/* contigAcc.c was originally generated by the autoSql program, which also 
 * generated contigAcc.h and contigAcc.sql.  This module links the database and
 * the RAM representation of objects. */

/* Copyright (C) 2014 The Regents of the University of California 
 * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */

#include "common.h"
#include "linefile.h"
#include "dystring.h"
#include "jksql.h"
#include "contigAcc.h"


void contigAccStaticLoad(char **row, struct contigAcc *ret)
/* Load a row from contigAcc table into ret.  The contents of ret will
 * be replaced at the next call to this function. */
{

ret->contig = row[0];
ret->acc = row[1];
}

struct contigAcc *contigAccLoad(char **row)
/* Load a contigAcc from row fetched with select * from contigAcc
 * from database.  Dispose of this with contigAccFree(). */
{
struct contigAcc *ret;

AllocVar(ret);
ret->contig = cloneString(row[0]);
ret->acc = cloneString(row[1]);
return ret;
}

struct contigAcc *contigAccLoadAll(char *fileName) 
/* Load all contigAcc from a whitespace-separated file.
 * Dispose of this with contigAccFreeList(). */
{
struct contigAcc *list = NULL, *el;
struct lineFile *lf = lineFileOpen(fileName, TRUE);
char *row[2];

while (lineFileRow(lf, row))
    {
    el = contigAccLoad(row);
    slAddHead(&list, el);
    }
lineFileClose(&lf);
slReverse(&list);
return list;
}

struct contigAcc *contigAccLoadAllByChar(char *fileName, char chopper) 
/* Load all contigAcc from a chopper separated file.
 * Dispose of this with contigAccFreeList(). */
{
struct contigAcc *list = NULL, *el;
struct lineFile *lf = lineFileOpen(fileName, TRUE);
char *row[2];

while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
    {
    el = contigAccLoad(row);
    slAddHead(&list, el);
    }
lineFileClose(&lf);
slReverse(&list);
return list;
}

struct contigAcc *contigAccCommaIn(char **pS, struct contigAcc *ret)
/* Create a contigAcc out of a comma separated string. 
 * This will fill in ret if non-null, otherwise will
 * return a new contigAcc */
{
char *s = *pS;

if (ret == NULL)
    AllocVar(ret);
ret->contig = sqlStringComma(&s);
ret->acc = sqlStringComma(&s);
*pS = s;
return ret;
}

void contigAccFree(struct contigAcc **pEl)
/* Free a single dynamically allocated contigAcc such as created
 * with contigAccLoad(). */
{
struct contigAcc *el;

if ((el = *pEl) == NULL) return;
freeMem(el->contig);
freeMem(el->acc);
freez(pEl);
}

void contigAccFreeList(struct contigAcc **pList)
/* Free a list of dynamically allocated contigAcc's */
{
struct contigAcc *el, *next;

for (el = *pList; el != NULL; el = next)
    {
    next = el->next;
    contigAccFree(&el);
    }
*pList = NULL;
}

void contigAccOutput(struct contigAcc *el, FILE *f, char sep, char lastSep) 
/* Print out contigAcc.  Separate fields with sep. Follow last field with lastSep. */
{
if (sep == ',') fputc('"',f);
fprintf(f, "%s", el->contig);
if (sep == ',') fputc('"',f);
fputc(sep,f);
if (sep == ',') fputc('"',f);
fprintf(f, "%s", el->acc);
if (sep == ',') fputc('"',f);
fputc(lastSep,f);
}

/* -------------------------------- End autoSql Generated Code -------------------------------- */

