/* chicken13kInfo.c was originally generated by the autoSql program, which also 
 * generated chicken13kInfo.h and chicken13kInfo.sql.  This module links the database and
 * the RAM representation of objects. */

/* Copyright (C) 2014 The Regents of the University of California 
 * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */

#include "common.h"
#include "linefile.h"
#include "dystring.h"
#include "jksql.h"
#include "chicken13kInfo.h"


void chicken13kInfoStaticLoad(char **row, struct chicken13kInfo *ret)
/* Load a row from chicken13kInfo table into ret.  The contents of ret will
 * be replaced at the next call to this function. */
{

ret->id = row[0];
ret->source = row[1];
strcpy(ret->pcr, row[2]);
ret->library = row[3];
ret->clone = row[4];
ret->gbkAcc = row[5];
ret->blat = row[6];
ret->sourceAnnot = row[7];
ret->tigrTc = row[8];
ret->tigrTcAnnot = row[9];
ret->blastAnnot = row[10];
ret->comment = row[11];
}

struct chicken13kInfo *chicken13kInfoLoad(char **row)
/* Load a chicken13kInfo from row fetched with select * from chicken13kInfo
 * from database.  Dispose of this with chicken13kInfoFree(). */
{
struct chicken13kInfo *ret;

AllocVar(ret);
ret->id = cloneString(row[0]);
ret->source = cloneString(row[1]);
strcpy(ret->pcr, row[2]);
ret->library = cloneString(row[3]);
ret->clone = cloneString(row[4]);
ret->gbkAcc = cloneString(row[5]);
ret->blat = cloneString(row[6]);
ret->sourceAnnot = cloneString(row[7]);
ret->tigrTc = cloneString(row[8]);
ret->tigrTcAnnot = cloneString(row[9]);
ret->blastAnnot = cloneString(row[10]);
ret->comment = cloneString(row[11]);
return ret;
}

struct chicken13kInfo *chicken13kInfoLoadAll(char *fileName) 
/* Load all chicken13kInfo from a whitespace-separated file.
 * Dispose of this with chicken13kInfoFreeList(). */
{
struct chicken13kInfo *list = NULL, *el;
struct lineFile *lf = lineFileOpen(fileName, TRUE);
char *row[12];

while (lineFileRow(lf, row))
    {
    el = chicken13kInfoLoad(row);
    slAddHead(&list, el);
    }
lineFileClose(&lf);
slReverse(&list);
return list;
}

struct chicken13kInfo *chicken13kInfoLoadAllByChar(char *fileName, char chopper) 
/* Load all chicken13kInfo from a chopper separated file.
 * Dispose of this with chicken13kInfoFreeList(). */
{
struct chicken13kInfo *list = NULL, *el;
struct lineFile *lf = lineFileOpen(fileName, TRUE);
char *row[12];

while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
    {
    el = chicken13kInfoLoad(row);
    slAddHead(&list, el);
    }
lineFileClose(&lf);
slReverse(&list);
return list;
}

struct chicken13kInfo *chicken13kInfoLoadByQuery(struct sqlConnection *conn, char *query)
/* Load all chicken13kInfo from table that satisfy the query given.  
 * Where query is of the form 'select * from example where something=something'
 * or 'select example.* from example, anotherTable where example.something = 
 * anotherTable.something'.
 * Dispose of this with chicken13kInfoFreeList(). */
{
struct chicken13kInfo *list = NULL, *el;
struct sqlResult *sr;
char **row;

sr = sqlGetResult(conn, query);
while ((row = sqlNextRow(sr)) != NULL)
    {
    el = chicken13kInfoLoad(row);
    slAddHead(&list, el);
    }
slReverse(&list);
sqlFreeResult(&sr);
return list;
}

void chicken13kInfoSaveToDb(struct sqlConnection *conn, struct chicken13kInfo *el, char *tableName, int updateSize)
/* Save chicken13kInfo as a row to the table specified by tableName. 
 * As blob fields may be arbitrary size updateSize specifies the approx size
 * of a string that would contain the entire query. Arrays of native types are
 * converted to comma separated strings and loaded as such, User defined types are
 * inserted as NULL. Strings are automatically escaped to allow insertion into the database. */
{
struct dyString *update = dyStringNew(updateSize);
sqlDyStringPrintf(update, "insert into %s values ( '%s','%s','%s','%s','%s','%s','%s',%s,'%s',%s,%s,%s)", 
	tableName,  el->id,  el->source,  el->pcr,  el->library,  el->clone,  el->gbkAcc,  el->blat,  el->sourceAnnot,  el->tigrTc,  el->tigrTcAnnot,  el->blastAnnot,  el->comment);
sqlUpdate(conn, update->string);
dyStringFree(&update);
}


struct chicken13kInfo *chicken13kInfoCommaIn(char **pS, struct chicken13kInfo *ret)
/* Create a chicken13kInfo out of a comma separated string. 
 * This will fill in ret if non-null, otherwise will
 * return a new chicken13kInfo */
{
char *s = *pS;

if (ret == NULL)
    AllocVar(ret);
ret->id = sqlStringComma(&s);
ret->source = sqlStringComma(&s);
sqlFixedStringComma(&s, ret->pcr, sizeof(ret->pcr));
ret->library = sqlStringComma(&s);
ret->clone = sqlStringComma(&s);
ret->gbkAcc = sqlStringComma(&s);
ret->blat = sqlStringComma(&s);
ret->sourceAnnot = sqlStringComma(&s);
ret->tigrTc = sqlStringComma(&s);
ret->tigrTcAnnot = sqlStringComma(&s);
ret->blastAnnot = sqlStringComma(&s);
ret->comment = sqlStringComma(&s);
*pS = s;
return ret;
}

void chicken13kInfoFree(struct chicken13kInfo **pEl)
/* Free a single dynamically allocated chicken13kInfo such as created
 * with chicken13kInfoLoad(). */
{
struct chicken13kInfo *el;

if ((el = *pEl) == NULL) return;
freeMem(el->id);
freeMem(el->source);
freeMem(el->library);
freeMem(el->clone);
freeMem(el->gbkAcc);
freeMem(el->blat);
freeMem(el->sourceAnnot);
freeMem(el->tigrTc);
freeMem(el->tigrTcAnnot);
freeMem(el->blastAnnot);
freeMem(el->comment);
freez(pEl);
}

void chicken13kInfoFreeList(struct chicken13kInfo **pList)
/* Free a list of dynamically allocated chicken13kInfo's */
{
struct chicken13kInfo *el, *next;

for (el = *pList; el != NULL; el = next)
    {
    next = el->next;
    chicken13kInfoFree(&el);
    }
*pList = NULL;
}

void chicken13kInfoOutput(struct chicken13kInfo *el, FILE *f, char sep, char lastSep) 
/* Print out chicken13kInfo.  Separate fields with sep. Follow last field with lastSep. */
{
if (sep == ',') fputc('"',f);
fprintf(f, "%s", el->id);
if (sep == ',') fputc('"',f);
fputc(sep,f);
if (sep == ',') fputc('"',f);
fprintf(f, "%s", el->source);
if (sep == ',') fputc('"',f);
fputc(sep,f);
if (sep == ',') fputc('"',f);
fprintf(f, "%s", el->pcr);
if (sep == ',') fputc('"',f);
fputc(sep,f);
if (sep == ',') fputc('"',f);
fprintf(f, "%s", el->library);
if (sep == ',') fputc('"',f);
fputc(sep,f);
if (sep == ',') fputc('"',f);
fprintf(f, "%s", el->clone);
if (sep == ',') fputc('"',f);
fputc(sep,f);
if (sep == ',') fputc('"',f);
fprintf(f, "%s", el->gbkAcc);
if (sep == ',') fputc('"',f);
fputc(sep,f);
if (sep == ',') fputc('"',f);
fprintf(f, "%s", el->blat);
if (sep == ',') fputc('"',f);
fputc(sep,f);
if (sep == ',') fputc('"',f);
fprintf(f, "%s", el->sourceAnnot);
if (sep == ',') fputc('"',f);
fputc(sep,f);
if (sep == ',') fputc('"',f);
fprintf(f, "%s", el->tigrTc);
if (sep == ',') fputc('"',f);
fputc(sep,f);
if (sep == ',') fputc('"',f);
fprintf(f, "%s", el->tigrTcAnnot);
if (sep == ',') fputc('"',f);
fputc(sep,f);
if (sep == ',') fputc('"',f);
fprintf(f, "%s", el->blastAnnot);
if (sep == ',') fputc('"',f);
fputc(sep,f);
if (sep == ',') fputc('"',f);
fprintf(f, "%s", el->comment);
if (sep == ',') fputc('"',f);
fputc(lastSep,f);
}

/* -------------------------------- End autoSql Generated Code -------------------------------- */

