/* affy120KDetails.h was originally generated by the autoSql program, which also 
 * generated affy120KDetails.c and affy120KDetails.sql.  This header links the database and
 * the RAM representation of objects. */

/* Copyright (C) 2013 The Regents of the University of California 
 * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */

#ifndef AFFY120KDETAILS_H
#define AFFY120KDETAILS_H

#ifndef JKSQL_H
#include "jksql.h"
#endif

#define AFFY120KDETAILS_NUM_COLS 64

struct affy120KDetails
/* Information from affyGenoDetails representing the Affymetrix 120K SNP Genotyping array */
    {
    struct affy120KDetails *next;  /* Next in singly linked list. */
    int affyId;	/* Affymetrix SNP id */
    char *rsId;	/* RS identifier (some are null) */
    char baseA[3];	/* The first allele (A) */
    char baseB[3];	/* The second allele (B) */
    char sequenceA[35];	/* The A allele with flanking sequence */
    char sequenceB[35];	/* The B allele with flanking sequence */
    char enzyme[9];	/* The enzyme that was used to prepare the sample (HindIII or XbaI) */
    float minFreq;	/* The minimum allele frequency */
    float hetzyg;	/* The heterozygosity from all observations */
    float avHetSE;	/* The Standard Error for the average heterozygosity (not used) */
    char NA04477[3];	/* Individual 01 */
    char NA04479[3];	/* Individual 02 */
    char NA04846[3];	/* Individual 03 */
    char NA11036[3];	/* Individual 04 */
    char NA11038[3];	/* Individual 05 */
    char NA13056[3];	/* Individual 06 */
    char NA17011[3];	/* Individual 07 */
    char NA17012[3];	/* Individual 08 */
    char NA17013[3];	/* Individual 09 */
    char NA17014[3];	/* Individual 10 */
    char NA17015[3];	/* Individual 11 */
    char NA17016[3];	/* Individual 12 */
    char NA17101[3];	/* Individual 13 */
    char NA17102[3];	/* Individual 14 */
    char NA17103[3];	/* Individual 15 */
    char NA17104[3];	/* Individual 16 */
    char NA17105[3];	/* Individual 17 */
    char NA17106[3];	/* Individual 18 */
    char NA17201[3];	/* Individual 19 */
    char NA17202[3];	/* Individual 20 */
    char NA17203[3];	/* Individual 21 */
    char NA17204[3];	/* Individual 22 */
    char NA17205[3];	/* Individual 23 */
    char NA17206[3];	/* Individual 24 */
    char NA17207[3];	/* Individual 25 */
    char NA17208[3];	/* Individual 26 */
    char NA17210[3];	/* Individual 27 */
    char NA17211[3];	/* Individual 28 */
    char NA17212[3];	/* Individual 29 */
    char NA17213[3];	/* Individual 30 */
    char PD01[3];	/* Individual 31 */
    char PD02[3];	/* Individual 32 */
    char PD03[3];	/* Individual 33 */
    char PD04[3];	/* Individual 34 */
    char PD05[3];	/* Individual 35 */
    char PD06[3];	/* Individual 36 */
    char PD07[3];	/* Individual 37 */
    char PD08[3];	/* Individual 38 */
    char PD09[3];	/* Individual 39 */
    char PD10[3];	/* Individual 40 */
    char PD11[3];	/* Individual 41 */
    char PD12[3];	/* Individual 42 */
    char PD13[3];	/* Individual 43 */
    char PD14[3];	/* Individual 44 */
    char PD15[3];	/* Individual 45 */
    char PD16[3];	/* Individual 46 */
    char PD17[3];	/* Individual 47 */
    char PD18[3];	/* Individual 48 */
    char PD19[3];	/* Individual 49 */
    char PD20[3];	/* Individual 50 */
    char PD21[3];	/* Individual 51 */
    char PD22[3];	/* Individual 52 */
    char PD23[3];	/* Individual 53 */
    char PD24[3];	/* Individual 54 */
    };

void affy120KDetailsStaticLoad(char **row, struct affy120KDetails *ret);
/* Load a row from affy120KDetails table into ret.  The contents of ret will
 * be replaced at the next call to this function. */

struct affy120KDetails *affy120KDetailsLoad(char **row);
/* Load a affy120KDetails from row fetched with select * from affy120KDetails
 * from database.  Dispose of this with affy120KDetailsFree(). */

struct affy120KDetails *affy120KDetailsLoadAll(char *fileName);
/* Load all affy120KDetails from whitespace-separated file.
 * Dispose of this with affy120KDetailsFreeList(). */

struct affy120KDetails *affy120KDetailsLoadAllByChar(char *fileName, char chopper);
/* Load all affy120KDetails from chopper separated file.
 * Dispose of this with affy120KDetailsFreeList(). */

#define affy120KDetailsLoadAllByTab(a) affy120KDetailsLoadAllByChar(a, '\t');
/* Load all affy120KDetails from tab separated file.
 * Dispose of this with affy120KDetailsFreeList(). */

struct affy120KDetails *affy120KDetailsLoadByQuery(struct sqlConnection *conn, char *query);
/* Load all affy120KDetails from table that satisfy the query given.  
 * Where query is of the form 'select * from example where something=something'
 * or 'select example.* from example, anotherTable where example.something = 
 * anotherTable.something'.
 * Dispose of this with affy120KDetailsFreeList(). */

void affy120KDetailsSaveToDb(struct sqlConnection *conn, struct affy120KDetails *el, char *tableName, int updateSize);
/* Save affy120KDetails as a row to the table specified by tableName. 
 * As blob fields may be arbitrary size updateSize specifies the approx size
 * of a string that would contain the entire query. Arrays of native types are
 * converted to comma separated strings and loaded as such, User defined types are
 * inserted as NULL. Strings are automatically escaped to allow insertion into the database. */

struct affy120KDetails *affy120KDetailsCommaIn(char **pS, struct affy120KDetails *ret);
/* Create a affy120KDetails out of a comma separated string. 
 * This will fill in ret if non-null, otherwise will
 * return a new affy120KDetails */

void affy120KDetailsFree(struct affy120KDetails **pEl);
/* Free a single dynamically allocated affy120KDetails such as created
 * with affy120KDetailsLoad(). */

void affy120KDetailsFreeList(struct affy120KDetails **pList);
/* Free a list of dynamically allocated affy120KDetails's */

void affy120KDetailsOutput(struct affy120KDetails *el, FILE *f, char sep, char lastSep);
/* Print out affy120KDetails.  Separate fields with sep. Follow last field with lastSep. */

#define affy120KDetailsTabOut(el,f) affy120KDetailsOutput(el,f,'\t','\n');
/* Print out affy120KDetails as a line in a tab-separated file. */

#define affy120KDetailsCommaOut(el,f) affy120KDetailsOutput(el,f,',',',');
/* Print out affy120KDetails as a comma separated list including final comma. */

/* -------------------------------- End autoSql Generated Code -------------------------------- */

#endif /* AFFY120KDETAILS_H */

