# chainGap.sql was originally generated by the autoSql program, which also 
# generated chainGap.c and chainGap.h.  This creates the database representation of
# an object which can be loaded and saved from RAM in a fairly 
# automatic way.

#alignment block in chain
CREATE TABLE chainGap (
    tName varchar(255) not null,	# Target sequence name
    tStart int unsigned not null,	# Alignment start position in target
    tEnd int unsigned not null,	# Alignment end position in target
    qStart int unsigned not null,	# start in query
    chainId int unsigned not null,	# chain id in chain table
              #Indices
    PRIMARY KEY(tName)
);
