# VISTA Enhancers track refs #16044  (2023-09-20 Gerardo)
cd /hive/data/outside/
mkdir vistaEnhancers; cd vistaEnhancers
mkdir hg38; cd hg38
liftOver -bedPlus=9 /hive/data/outside/vistaEnhancers/hg19/sortedVistaEnhancers.bed /hive/data/gbdb/hg19/liftOver/hg19ToHg38.over.chain.gz vistaEnhancers.bed unMapped
bedToBigBed -tab -type=bed9+ -as=/hive/data/outside/vistaEnhancers/hg19/vistaEnhancers.as vistaEnhancers.bed https://hgdownload.soe.ucsc.edu/goldenPath/hg38/bigZips/hg38.chrom.sizes vistaEnhancers.bb
cd /gbdb/hg38
mkdir vistaEnhancers; cd vistaEnhancers
# Making symlink for big files
ln -s /hive/data/outside/vistaEnhancers/hg38/vistaEnhancers.bb
cd ~/kent/src/hg/makeDb/trackDb/human/hg38
vi trackDb.ra
#############################################################################
# VISTA Enhancers update 2025 #35531 (2025-04-30 Gerardo)

cd /hive/data/outside/otto/vista
wget -q  https://gitlab.com/egsb-mfgl/vista-data/-/raw/main/locus_ucsc_hg38.bed  -O vista.hg38.latest.bed

bedToBigBed -tab -sort -type=bed9+1 -as=vista.as vista.hg38.latest.bed \
  https://hgdownload.soe.ucsc.edu/goldenPath/hg38/bigZips/hg38.chrom.sizes vista.hg38.latest.bb \
  > /dev/null 2>&1

mv vista.hg38.latest.bb vista.hg38.bb
cd /gbdb/hg38/vistaEnhancers/
# Making symlink for bigBed files
ln -s /hive/data/outside/otto/vista/vista.hg38.bb vistaEnhancers.bb
cd ~/kent/src/hg/makeDb/trackDb/human/hg38
vi trackDb.ra
