track rnaSeqStar
compositeTrack on
group regulation
shortLabel RNAseq
longLabel RNAseq analysis and raw data
subGroup1 view Views expression=Expression junction=Splice_Junctions alignment=Alignments
subGroup2 tissue Tissue brain=brain liver=liver spleen=spleen
dimensions dimensionX=view dimensionY=tissue
sortOrder view=+ tissue=+
visibility full
dragAndDrop subTracks
type bed 3
noInherit on
html html/rnaSeqStar

    track GCA_001624775.1_PWK_PhJ_v1ExpressionStar
    shortLabel GCA_001624775.1_PWK_PhJ_v1 Expression
    view expression
    visibility dense
    subTrack rnaSeqStar
    maxHeightPixels 100:24:16
    autoScale on

        track wigStar_GCA_001624775.1_PWK_PhJ_v1_brain
        longLabel GCA_001624775.1_PWK_PhJ_v1 brain Expression
        shortLabel GCA_001624775.1_PWK_PhJ_v1_brain_Expression
        parent GCA_001624775.1_PWK_PhJ_v1ExpressionStar off
        type bigWig
        bigDataUrl rnaSeqData/brain.normalized_average_expression.bw
        color 153,38,0
        subGroups view=expression tissue=brain

        track wigStar_GCA_001624775.1_PWK_PhJ_v1_liver
        longLabel GCA_001624775.1_PWK_PhJ_v1 liver Expression
        shortLabel GCA_001624775.1_PWK_PhJ_v1_liver_Expression
        parent GCA_001624775.1_PWK_PhJ_v1ExpressionStar off
        type bigWig
        bigDataUrl rnaSeqData/liver.normalized_average_expression.bw
        color 153,38,0
        subGroups view=expression tissue=liver

        track wigStar_GCA_001624775.1_PWK_PhJ_v1_spleen
        longLabel GCA_001624775.1_PWK_PhJ_v1 spleen Expression
        shortLabel GCA_001624775.1_PWK_PhJ_v1_spleen_Expression
        parent GCA_001624775.1_PWK_PhJ_v1ExpressionStar off
        type bigWig
        bigDataUrl rnaSeqData/spleen.normalized_average_expression.bw
        color 153,38,0
        subGroups view=expression tissue=spleen

    track GCA_001624775.1_PWK_PhJ_v1_Alignments
    shortLabel Raw Alignments
    view alignment
    visibility hide
    subTrack rnaSeqStar

        track bamstar_GCA_001624775.1_PWK_PhJ_v1_brain_ERR033003
        longLabel GCA_001624775.1_PWK_PhJ_v1 brain RNASeq Alignments ERR033003
        shortLabel GCA_001624775.1_PWK_PhJ_v1_RNASeq_ERR033003
        bigDataUrl rnaSeqData/brain.ERR033003.sortedByCoord.out.bam
        parent GCA_001624775.1_PWK_PhJ_v1_Alignments off
        subGroups view=alignment tissue=brain
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624775.1_PWK_PhJ_v1_brain_ERR033004
        longLabel GCA_001624775.1_PWK_PhJ_v1 brain RNASeq Alignments ERR033004
        shortLabel GCA_001624775.1_PWK_PhJ_v1_RNASeq_ERR033004
        bigDataUrl rnaSeqData/brain.ERR033004.sortedByCoord.out.bam
        parent GCA_001624775.1_PWK_PhJ_v1_Alignments off
        subGroups view=alignment tissue=brain
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624775.1_PWK_PhJ_v1_brain_SRR1924499
        longLabel GCA_001624775.1_PWK_PhJ_v1 brain RNASeq Alignments SRR1924499
        shortLabel GCA_001624775.1_PWK_PhJ_v1_RNASeq_SRR1924499
        bigDataUrl rnaSeqData/brain.SRR1924499.sortedByCoord.out.bam
        parent GCA_001624775.1_PWK_PhJ_v1_Alignments off
        subGroups view=alignment tissue=brain
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624775.1_PWK_PhJ_v1_brain_SRR1924500
        longLabel GCA_001624775.1_PWK_PhJ_v1 brain RNASeq Alignments SRR1924500
        shortLabel GCA_001624775.1_PWK_PhJ_v1_RNASeq_SRR1924500
        bigDataUrl rnaSeqData/brain.SRR1924500.sortedByCoord.out.bam
        parent GCA_001624775.1_PWK_PhJ_v1_Alignments off
        subGroups view=alignment tissue=brain
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624775.1_PWK_PhJ_v1_brain_SRR1924501
        longLabel GCA_001624775.1_PWK_PhJ_v1 brain RNASeq Alignments SRR1924501
        shortLabel GCA_001624775.1_PWK_PhJ_v1_RNASeq_SRR1924501
        bigDataUrl rnaSeqData/brain.SRR1924501.sortedByCoord.out.bam
        parent GCA_001624775.1_PWK_PhJ_v1_Alignments off
        subGroups view=alignment tissue=brain
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624775.1_PWK_PhJ_v1_brain_SRR1924502
        longLabel GCA_001624775.1_PWK_PhJ_v1 brain RNASeq Alignments SRR1924502
        shortLabel GCA_001624775.1_PWK_PhJ_v1_RNASeq_SRR1924502
        bigDataUrl rnaSeqData/brain.SRR1924502.sortedByCoord.out.bam
        parent GCA_001624775.1_PWK_PhJ_v1_Alignments off
        subGroups view=alignment tissue=brain
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624775.1_PWK_PhJ_v1_brain_SRR1924503
        longLabel GCA_001624775.1_PWK_PhJ_v1 brain RNASeq Alignments SRR1924503
        shortLabel GCA_001624775.1_PWK_PhJ_v1_RNASeq_SRR1924503
        bigDataUrl rnaSeqData/brain.SRR1924503.sortedByCoord.out.bam
        parent GCA_001624775.1_PWK_PhJ_v1_Alignments off
        subGroups view=alignment tissue=brain
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624775.1_PWK_PhJ_v1_brain_SRR1924504
        longLabel GCA_001624775.1_PWK_PhJ_v1 brain RNASeq Alignments SRR1924504
        shortLabel GCA_001624775.1_PWK_PhJ_v1_RNASeq_SRR1924504
        bigDataUrl rnaSeqData/brain.SRR1924504.sortedByCoord.out.bam
        parent GCA_001624775.1_PWK_PhJ_v1_Alignments off
        subGroups view=alignment tissue=brain
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624775.1_PWK_PhJ_v1_brain_SRR1924505
        longLabel GCA_001624775.1_PWK_PhJ_v1 brain RNASeq Alignments SRR1924505
        shortLabel GCA_001624775.1_PWK_PhJ_v1_RNASeq_SRR1924505
        bigDataUrl rnaSeqData/brain.SRR1924505.sortedByCoord.out.bam
        parent GCA_001624775.1_PWK_PhJ_v1_Alignments off
        subGroups view=alignment tissue=brain
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624775.1_PWK_PhJ_v1_brain_SRR1924506
        longLabel GCA_001624775.1_PWK_PhJ_v1 brain RNASeq Alignments SRR1924506
        shortLabel GCA_001624775.1_PWK_PhJ_v1_RNASeq_SRR1924506
        bigDataUrl rnaSeqData/brain.SRR1924506.sortedByCoord.out.bam
        parent GCA_001624775.1_PWK_PhJ_v1_Alignments off
        subGroups view=alignment tissue=brain
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624775.1_PWK_PhJ_v1_liver_16493_7_2
        longLabel GCA_001624775.1_PWK_PhJ_v1 liver RNASeq Alignments 16493_7_2
        shortLabel GCA_001624775.1_PWK_PhJ_v1_RNASeq_16493_7_2
        bigDataUrl rnaSeqData/liver.16493_7_2.sortedByCoord.out.bam
        parent GCA_001624775.1_PWK_PhJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624775.1_PWK_PhJ_v1_liver_SRR826380
        longLabel GCA_001624775.1_PWK_PhJ_v1 liver RNASeq Alignments SRR826380
        shortLabel GCA_001624775.1_PWK_PhJ_v1_RNASeq_SRR826380
        bigDataUrl rnaSeqData/liver.SRR826380.sortedByCoord.out.bam
        parent GCA_001624775.1_PWK_PhJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624775.1_PWK_PhJ_v1_liver_SRR826381
        longLabel GCA_001624775.1_PWK_PhJ_v1 liver RNASeq Alignments SRR826381
        shortLabel GCA_001624775.1_PWK_PhJ_v1_RNASeq_SRR826381
        bigDataUrl rnaSeqData/liver.SRR826381.sortedByCoord.out.bam
        parent GCA_001624775.1_PWK_PhJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624775.1_PWK_PhJ_v1_liver_SRR826382
        longLabel GCA_001624775.1_PWK_PhJ_v1 liver RNASeq Alignments SRR826382
        shortLabel GCA_001624775.1_PWK_PhJ_v1_RNASeq_SRR826382
        bigDataUrl rnaSeqData/liver.SRR826382.sortedByCoord.out.bam
        parent GCA_001624775.1_PWK_PhJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624775.1_PWK_PhJ_v1_liver_SRR826383
        longLabel GCA_001624775.1_PWK_PhJ_v1 liver RNASeq Alignments SRR826383
        shortLabel GCA_001624775.1_PWK_PhJ_v1_RNASeq_SRR826383
        bigDataUrl rnaSeqData/liver.SRR826383.sortedByCoord.out.bam
        parent GCA_001624775.1_PWK_PhJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624775.1_PWK_PhJ_v1_liver_SRR826384
        longLabel GCA_001624775.1_PWK_PhJ_v1 liver RNASeq Alignments SRR826384
        shortLabel GCA_001624775.1_PWK_PhJ_v1_RNASeq_SRR826384
        bigDataUrl rnaSeqData/liver.SRR826384.sortedByCoord.out.bam
        parent GCA_001624775.1_PWK_PhJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624775.1_PWK_PhJ_v1_liver_SRR826385
        longLabel GCA_001624775.1_PWK_PhJ_v1 liver RNASeq Alignments SRR826385
        shortLabel GCA_001624775.1_PWK_PhJ_v1_RNASeq_SRR826385
        bigDataUrl rnaSeqData/liver.SRR826385.sortedByCoord.out.bam
        parent GCA_001624775.1_PWK_PhJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624775.1_PWK_PhJ_v1_liver_SRR826386
        longLabel GCA_001624775.1_PWK_PhJ_v1 liver RNASeq Alignments SRR826386
        shortLabel GCA_001624775.1_PWK_PhJ_v1_RNASeq_SRR826386
        bigDataUrl rnaSeqData/liver.SRR826386.sortedByCoord.out.bam
        parent GCA_001624775.1_PWK_PhJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624775.1_PWK_PhJ_v1_liver_SRR826387
        longLabel GCA_001624775.1_PWK_PhJ_v1 liver RNASeq Alignments SRR826387
        shortLabel GCA_001624775.1_PWK_PhJ_v1_RNASeq_SRR826387
        bigDataUrl rnaSeqData/liver.SRR826387.sortedByCoord.out.bam
        parent GCA_001624775.1_PWK_PhJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624775.1_PWK_PhJ_v1_liver_SRR826388
        longLabel GCA_001624775.1_PWK_PhJ_v1 liver RNASeq Alignments SRR826388
        shortLabel GCA_001624775.1_PWK_PhJ_v1_RNASeq_SRR826388
        bigDataUrl rnaSeqData/liver.SRR826388.sortedByCoord.out.bam
        parent GCA_001624775.1_PWK_PhJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624775.1_PWK_PhJ_v1_liver_SRR826389
        longLabel GCA_001624775.1_PWK_PhJ_v1 liver RNASeq Alignments SRR826389
        shortLabel GCA_001624775.1_PWK_PhJ_v1_RNASeq_SRR826389
        bigDataUrl rnaSeqData/liver.SRR826389.sortedByCoord.out.bam
        parent GCA_001624775.1_PWK_PhJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624775.1_PWK_PhJ_v1_liver_SRR826390
        longLabel GCA_001624775.1_PWK_PhJ_v1 liver RNASeq Alignments SRR826390
        shortLabel GCA_001624775.1_PWK_PhJ_v1_RNASeq_SRR826390
        bigDataUrl rnaSeqData/liver.SRR826390.sortedByCoord.out.bam
        parent GCA_001624775.1_PWK_PhJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624775.1_PWK_PhJ_v1_liver_SRR826391
        longLabel GCA_001624775.1_PWK_PhJ_v1 liver RNASeq Alignments SRR826391
        shortLabel GCA_001624775.1_PWK_PhJ_v1_RNASeq_SRR826391
        bigDataUrl rnaSeqData/liver.SRR826391.sortedByCoord.out.bam
        parent GCA_001624775.1_PWK_PhJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624775.1_PWK_PhJ_v1_liver_SRR826392
        longLabel GCA_001624775.1_PWK_PhJ_v1 liver RNASeq Alignments SRR826392
        shortLabel GCA_001624775.1_PWK_PhJ_v1_RNASeq_SRR826392
        bigDataUrl rnaSeqData/liver.SRR826392.sortedByCoord.out.bam
        parent GCA_001624775.1_PWK_PhJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624775.1_PWK_PhJ_v1_liver_SRR826393
        longLabel GCA_001624775.1_PWK_PhJ_v1 liver RNASeq Alignments SRR826393
        shortLabel GCA_001624775.1_PWK_PhJ_v1_RNASeq_SRR826393
        bigDataUrl rnaSeqData/liver.SRR826393.sortedByCoord.out.bam
        parent GCA_001624775.1_PWK_PhJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624775.1_PWK_PhJ_v1_liver_SRR826394
        longLabel GCA_001624775.1_PWK_PhJ_v1 liver RNASeq Alignments SRR826394
        shortLabel GCA_001624775.1_PWK_PhJ_v1_RNASeq_SRR826394
        bigDataUrl rnaSeqData/liver.SRR826394.sortedByCoord.out.bam
        parent GCA_001624775.1_PWK_PhJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624775.1_PWK_PhJ_v1_liver_SRR826395
        longLabel GCA_001624775.1_PWK_PhJ_v1 liver RNASeq Alignments SRR826395
        shortLabel GCA_001624775.1_PWK_PhJ_v1_RNASeq_SRR826395
        bigDataUrl rnaSeqData/liver.SRR826395.sortedByCoord.out.bam
        parent GCA_001624775.1_PWK_PhJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624775.1_PWK_PhJ_v1_spleen_16493_7_5
        longLabel GCA_001624775.1_PWK_PhJ_v1 spleen RNASeq Alignments 16493_7_5
        shortLabel GCA_001624775.1_PWK_PhJ_v1_RNASeq_16493_7_5
        bigDataUrl rnaSeqData/spleen.16493_7_5.sortedByCoord.out.bam
        parent GCA_001624775.1_PWK_PhJ_v1_Alignments off
        subGroups view=alignment tissue=spleen
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

    track GCA_001624775.1_PWK_PhJ_v1_SpliceJunctions
    shortLabel Splice Junctions
    view junction
    visibility squish
    subTrack rnaSeqStar

        track GCA_001624775.1_PWK_PhJ_v1_brain_SpliceJunctions
        longLabel GCA_001624775.1_PWK_PhJ_v1 brain STAR Splice Junctions
        shortLabel GCA_001624775.1_PWK_PhJ_v1_brain_Splice_Junctions
        parent GCA_001624775.1_PWK_PhJ_v1_SpliceJunctions off
        bigDataUrl rnaSeqData/brain.filtered_splice_junctions.bb
        type bigBed 12
        colorByStrand 255,0,0 0,0,255
        subGroups view=junction tissue=brain

        track GCA_001624775.1_PWK_PhJ_v1_liver_SpliceJunctions
        longLabel GCA_001624775.1_PWK_PhJ_v1 liver STAR Splice Junctions
        shortLabel GCA_001624775.1_PWK_PhJ_v1_liver_Splice_Junctions
        parent GCA_001624775.1_PWK_PhJ_v1_SpliceJunctions off
        bigDataUrl rnaSeqData/liver.filtered_splice_junctions.bb
        type bigBed 12
        colorByStrand 255,0,0 0,0,255
        subGroups view=junction tissue=liver

        track GCA_001624775.1_PWK_PhJ_v1_spleen_SpliceJunctions
        longLabel GCA_001624775.1_PWK_PhJ_v1 spleen STAR Splice Junctions
        shortLabel GCA_001624775.1_PWK_PhJ_v1_spleen_Splice_Junctions
        parent GCA_001624775.1_PWK_PhJ_v1_SpliceJunctions off
        bigDataUrl rnaSeqData/spleen.filtered_splice_junctions.bb
        type bigBed 12
        colorByStrand 255,0,0 0,0,255
        subGroups view=junction tissue=spleen

