track rnaSeqStar
compositeTrack on
group regulation
shortLabel RNAseq
longLabel RNAseq analysis and raw data
subGroup1 view Views expression=Expression junction=Splice_Junctions alignment=Alignments
subGroup2 tissue Tissue brain=brain liver=liver
dimensions dimensionX=view dimensionY=tissue
sortOrder view=+ tissue=+
visibility full
dragAndDrop subTracks
type bed 3
noInherit on
html html/rnaSeqStar

    track GCA_001624185.1_129S1_SvImJ_v1ExpressionStar
    shortLabel GCA_001624185.1_129S1_SvImJ_v1 Expression
    view expression
    visibility dense
    subTrack rnaSeqStar
    maxHeightPixels 100:24:16
    autoScale on

        track wigStar_GCA_001624185.1_129S1_SvImJ_v1_brain
        longLabel GCA_001624185.1_129S1_SvImJ_v1 brain Expression
        shortLabel GCA_001624185.1_129S1_SvImJ_v1_brain_Expression
        parent GCA_001624185.1_129S1_SvImJ_v1ExpressionStar off
        type bigWig
        bigDataUrl rnaSeqData/brain.normalized_average_expression.bw
        color 153,38,0
        subGroups view=expression tissue=brain

        track wigStar_GCA_001624185.1_129S1_SvImJ_v1_liver
        longLabel GCA_001624185.1_129S1_SvImJ_v1 liver Expression
        shortLabel GCA_001624185.1_129S1_SvImJ_v1_liver_Expression
        parent GCA_001624185.1_129S1_SvImJ_v1ExpressionStar off
        type bigWig
        bigDataUrl rnaSeqData/liver.normalized_average_expression.bw
        color 153,38,0
        subGroups view=expression tissue=liver

    track GCA_001624185.1_129S1_SvImJ_v1_Alignments
    shortLabel Raw Alignments
    view alignment
    visibility hide
    subTrack rnaSeqStar

        track bamstar_GCA_001624185.1_129S1_SvImJ_v1_brain_ERR033018
        longLabel GCA_001624185.1_129S1_SvImJ_v1 brain RNASeq Alignments ERR033018
        shortLabel GCA_001624185.1_129S1_SvImJ_v1_RNASeq_ERR033018
        bigDataUrl rnaSeqData/brain.ERR033018.sortedByCoord.out.bam
        parent GCA_001624185.1_129S1_SvImJ_v1_Alignments off
        subGroups view=alignment tissue=brain
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624185.1_129S1_SvImJ_v1_brain_ERR033019
        longLabel GCA_001624185.1_129S1_SvImJ_v1 brain RNASeq Alignments ERR033019
        shortLabel GCA_001624185.1_129S1_SvImJ_v1_RNASeq_ERR033019
        bigDataUrl rnaSeqData/brain.ERR033019.sortedByCoord.out.bam
        parent GCA_001624185.1_129S1_SvImJ_v1_Alignments off
        subGroups view=alignment tissue=brain
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624185.1_129S1_SvImJ_v1_liver_SRR826284
        longLabel GCA_001624185.1_129S1_SvImJ_v1 liver RNASeq Alignments SRR826284
        shortLabel GCA_001624185.1_129S1_SvImJ_v1_RNASeq_SRR826284
        bigDataUrl rnaSeqData/liver.SRR826284.sortedByCoord.out.bam
        parent GCA_001624185.1_129S1_SvImJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624185.1_129S1_SvImJ_v1_liver_SRR826285
        longLabel GCA_001624185.1_129S1_SvImJ_v1 liver RNASeq Alignments SRR826285
        shortLabel GCA_001624185.1_129S1_SvImJ_v1_RNASeq_SRR826285
        bigDataUrl rnaSeqData/liver.SRR826285.sortedByCoord.out.bam
        parent GCA_001624185.1_129S1_SvImJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624185.1_129S1_SvImJ_v1_liver_SRR826286
        longLabel GCA_001624185.1_129S1_SvImJ_v1 liver RNASeq Alignments SRR826286
        shortLabel GCA_001624185.1_129S1_SvImJ_v1_RNASeq_SRR826286
        bigDataUrl rnaSeqData/liver.SRR826286.sortedByCoord.out.bam
        parent GCA_001624185.1_129S1_SvImJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624185.1_129S1_SvImJ_v1_liver_SRR826287
        longLabel GCA_001624185.1_129S1_SvImJ_v1 liver RNASeq Alignments SRR826287
        shortLabel GCA_001624185.1_129S1_SvImJ_v1_RNASeq_SRR826287
        bigDataUrl rnaSeqData/liver.SRR826287.sortedByCoord.out.bam
        parent GCA_001624185.1_129S1_SvImJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624185.1_129S1_SvImJ_v1_liver_SRR826288
        longLabel GCA_001624185.1_129S1_SvImJ_v1 liver RNASeq Alignments SRR826288
        shortLabel GCA_001624185.1_129S1_SvImJ_v1_RNASeq_SRR826288
        bigDataUrl rnaSeqData/liver.SRR826288.sortedByCoord.out.bam
        parent GCA_001624185.1_129S1_SvImJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624185.1_129S1_SvImJ_v1_liver_SRR826289
        longLabel GCA_001624185.1_129S1_SvImJ_v1 liver RNASeq Alignments SRR826289
        shortLabel GCA_001624185.1_129S1_SvImJ_v1_RNASeq_SRR826289
        bigDataUrl rnaSeqData/liver.SRR826289.sortedByCoord.out.bam
        parent GCA_001624185.1_129S1_SvImJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624185.1_129S1_SvImJ_v1_liver_SRR826290
        longLabel GCA_001624185.1_129S1_SvImJ_v1 liver RNASeq Alignments SRR826290
        shortLabel GCA_001624185.1_129S1_SvImJ_v1_RNASeq_SRR826290
        bigDataUrl rnaSeqData/liver.SRR826290.sortedByCoord.out.bam
        parent GCA_001624185.1_129S1_SvImJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624185.1_129S1_SvImJ_v1_liver_SRR826291
        longLabel GCA_001624185.1_129S1_SvImJ_v1 liver RNASeq Alignments SRR826291
        shortLabel GCA_001624185.1_129S1_SvImJ_v1_RNASeq_SRR826291
        bigDataUrl rnaSeqData/liver.SRR826291.sortedByCoord.out.bam
        parent GCA_001624185.1_129S1_SvImJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624185.1_129S1_SvImJ_v1_liver_SRR826292
        longLabel GCA_001624185.1_129S1_SvImJ_v1 liver RNASeq Alignments SRR826292
        shortLabel GCA_001624185.1_129S1_SvImJ_v1_RNASeq_SRR826292
        bigDataUrl rnaSeqData/liver.SRR826292.sortedByCoord.out.bam
        parent GCA_001624185.1_129S1_SvImJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624185.1_129S1_SvImJ_v1_liver_SRR826293
        longLabel GCA_001624185.1_129S1_SvImJ_v1 liver RNASeq Alignments SRR826293
        shortLabel GCA_001624185.1_129S1_SvImJ_v1_RNASeq_SRR826293
        bigDataUrl rnaSeqData/liver.SRR826293.sortedByCoord.out.bam
        parent GCA_001624185.1_129S1_SvImJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624185.1_129S1_SvImJ_v1_liver_SRR826294
        longLabel GCA_001624185.1_129S1_SvImJ_v1 liver RNASeq Alignments SRR826294
        shortLabel GCA_001624185.1_129S1_SvImJ_v1_RNASeq_SRR826294
        bigDataUrl rnaSeqData/liver.SRR826294.sortedByCoord.out.bam
        parent GCA_001624185.1_129S1_SvImJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624185.1_129S1_SvImJ_v1_liver_SRR826295
        longLabel GCA_001624185.1_129S1_SvImJ_v1 liver RNASeq Alignments SRR826295
        shortLabel GCA_001624185.1_129S1_SvImJ_v1_RNASeq_SRR826295
        bigDataUrl rnaSeqData/liver.SRR826295.sortedByCoord.out.bam
        parent GCA_001624185.1_129S1_SvImJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624185.1_129S1_SvImJ_v1_liver_SRR826296
        longLabel GCA_001624185.1_129S1_SvImJ_v1 liver RNASeq Alignments SRR826296
        shortLabel GCA_001624185.1_129S1_SvImJ_v1_RNASeq_SRR826296
        bigDataUrl rnaSeqData/liver.SRR826296.sortedByCoord.out.bam
        parent GCA_001624185.1_129S1_SvImJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624185.1_129S1_SvImJ_v1_liver_SRR826297
        longLabel GCA_001624185.1_129S1_SvImJ_v1 liver RNASeq Alignments SRR826297
        shortLabel GCA_001624185.1_129S1_SvImJ_v1_RNASeq_SRR826297
        bigDataUrl rnaSeqData/liver.SRR826297.sortedByCoord.out.bam
        parent GCA_001624185.1_129S1_SvImJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624185.1_129S1_SvImJ_v1_liver_SRR826298
        longLabel GCA_001624185.1_129S1_SvImJ_v1 liver RNASeq Alignments SRR826298
        shortLabel GCA_001624185.1_129S1_SvImJ_v1_RNASeq_SRR826298
        bigDataUrl rnaSeqData/liver.SRR826298.sortedByCoord.out.bam
        parent GCA_001624185.1_129S1_SvImJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624185.1_129S1_SvImJ_v1_liver_SRR826299
        longLabel GCA_001624185.1_129S1_SvImJ_v1 liver RNASeq Alignments SRR826299
        shortLabel GCA_001624185.1_129S1_SvImJ_v1_RNASeq_SRR826299
        bigDataUrl rnaSeqData/liver.SRR826299.sortedByCoord.out.bam
        parent GCA_001624185.1_129S1_SvImJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

    track GCA_001624185.1_129S1_SvImJ_v1_SpliceJunctions
    shortLabel Splice Junctions
    view junction
    visibility squish
    subTrack rnaSeqStar

        track GCA_001624185.1_129S1_SvImJ_v1_brain_SpliceJunctions
        longLabel GCA_001624185.1_129S1_SvImJ_v1 brain STAR Splice Junctions
        shortLabel GCA_001624185.1_129S1_SvImJ_v1_brain_Splice_Junctions
        parent GCA_001624185.1_129S1_SvImJ_v1_SpliceJunctions off
        bigDataUrl rnaSeqData/brain.filtered_splice_junctions.bb
        type bigBed 12
        colorByStrand 255,0,0 0,0,255
        subGroups view=junction tissue=brain

        track GCA_001624185.1_129S1_SvImJ_v1_liver_SpliceJunctions
        longLabel GCA_001624185.1_129S1_SvImJ_v1 liver STAR Splice Junctions
        shortLabel GCA_001624185.1_129S1_SvImJ_v1_liver_Splice_Junctions
        parent GCA_001624185.1_129S1_SvImJ_v1_SpliceJunctions off
        bigDataUrl rnaSeqData/liver.filtered_splice_junctions.bb
        type bigBed 12
        colorByStrand 255,0,0 0,0,255
        subGroups view=junction tissue=liver

