track rnaSeqStar
compositeTrack on
group regulation
shortLabel RNAseq
longLabel RNAseq analysis and raw data
subGroup1 view Views expression=Expression junction=Splice_Junctions alignment=Alignments
subGroup2 tissue Tissue brain=brain liver=liver
dimensions dimensionX=view dimensionY=tissue
sortOrder view=+ tissue=+
visibility full
dragAndDrop subTracks
type bed 3
noInherit on
html html/rnaSeqStar

    track GCA_001624835.1_WSB_EiJ_v1ExpressionStar
    shortLabel GCA_001624835.1_WSB_EiJ_v1 Expression
    view expression
    visibility dense
    subTrack rnaSeqStar
    maxHeightPixels 100:24:16
    autoScale on

        track wigStar_GCA_001624835.1_WSB_EiJ_v1_brain
        longLabel GCA_001624835.1_WSB_EiJ_v1 brain Expression
        shortLabel GCA_001624835.1_WSB_EiJ_v1_brain_Expression
        parent GCA_001624835.1_WSB_EiJ_v1ExpressionStar off
        type bigWig
        bigDataUrl rnaSeqData/brain.normalized_average_expression.bw
        color 153,38,0
        subGroups view=expression tissue=brain

        track wigStar_GCA_001624835.1_WSB_EiJ_v1_liver
        longLabel GCA_001624835.1_WSB_EiJ_v1 liver Expression
        shortLabel GCA_001624835.1_WSB_EiJ_v1_liver_Expression
        parent GCA_001624835.1_WSB_EiJ_v1ExpressionStar off
        type bigWig
        bigDataUrl rnaSeqData/liver.normalized_average_expression.bw
        color 153,38,0
        subGroups view=expression tissue=liver

    track GCA_001624835.1_WSB_EiJ_v1_Alignments
    shortLabel Raw Alignments
    view alignment
    visibility hide
    subTrack rnaSeqStar

        track bamstar_GCA_001624835.1_WSB_EiJ_v1_brain_ERR032999
        longLabel GCA_001624835.1_WSB_EiJ_v1 brain RNASeq Alignments ERR032999
        shortLabel GCA_001624835.1_WSB_EiJ_v1_RNASeq_ERR032999
        bigDataUrl rnaSeqData/brain.ERR032999.sortedByCoord.out.bam
        parent GCA_001624835.1_WSB_EiJ_v1_Alignments off
        subGroups view=alignment tissue=brain
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624835.1_WSB_EiJ_v1_brain_ERR033000
        longLabel GCA_001624835.1_WSB_EiJ_v1 brain RNASeq Alignments ERR033000
        shortLabel GCA_001624835.1_WSB_EiJ_v1_RNASeq_ERR033000
        bigDataUrl rnaSeqData/brain.ERR033000.sortedByCoord.out.bam
        parent GCA_001624835.1_WSB_EiJ_v1_Alignments off
        subGroups view=alignment tissue=brain
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624835.1_WSB_EiJ_v1_brain_SRR1924541
        longLabel GCA_001624835.1_WSB_EiJ_v1 brain RNASeq Alignments SRR1924541
        shortLabel GCA_001624835.1_WSB_EiJ_v1_RNASeq_SRR1924541
        bigDataUrl rnaSeqData/brain.SRR1924541.sortedByCoord.out.bam
        parent GCA_001624835.1_WSB_EiJ_v1_Alignments off
        subGroups view=alignment tissue=brain
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624835.1_WSB_EiJ_v1_brain_SRR1924542
        longLabel GCA_001624835.1_WSB_EiJ_v1 brain RNASeq Alignments SRR1924542
        shortLabel GCA_001624835.1_WSB_EiJ_v1_RNASeq_SRR1924542
        bigDataUrl rnaSeqData/brain.SRR1924542.sortedByCoord.out.bam
        parent GCA_001624835.1_WSB_EiJ_v1_Alignments off
        subGroups view=alignment tissue=brain
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624835.1_WSB_EiJ_v1_brain_SRR1924543
        longLabel GCA_001624835.1_WSB_EiJ_v1 brain RNASeq Alignments SRR1924543
        shortLabel GCA_001624835.1_WSB_EiJ_v1_RNASeq_SRR1924543
        bigDataUrl rnaSeqData/brain.SRR1924543.sortedByCoord.out.bam
        parent GCA_001624835.1_WSB_EiJ_v1_Alignments off
        subGroups view=alignment tissue=brain
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624835.1_WSB_EiJ_v1_brain_SRR1924544
        longLabel GCA_001624835.1_WSB_EiJ_v1 brain RNASeq Alignments SRR1924544
        shortLabel GCA_001624835.1_WSB_EiJ_v1_RNASeq_SRR1924544
        bigDataUrl rnaSeqData/brain.SRR1924544.sortedByCoord.out.bam
        parent GCA_001624835.1_WSB_EiJ_v1_Alignments off
        subGroups view=alignment tissue=brain
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624835.1_WSB_EiJ_v1_brain_SRR1924545
        longLabel GCA_001624835.1_WSB_EiJ_v1 brain RNASeq Alignments SRR1924545
        shortLabel GCA_001624835.1_WSB_EiJ_v1_RNASeq_SRR1924545
        bigDataUrl rnaSeqData/brain.SRR1924545.sortedByCoord.out.bam
        parent GCA_001624835.1_WSB_EiJ_v1_Alignments off
        subGroups view=alignment tissue=brain
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624835.1_WSB_EiJ_v1_brain_SRR1924546
        longLabel GCA_001624835.1_WSB_EiJ_v1 brain RNASeq Alignments SRR1924546
        shortLabel GCA_001624835.1_WSB_EiJ_v1_RNASeq_SRR1924546
        bigDataUrl rnaSeqData/brain.SRR1924546.sortedByCoord.out.bam
        parent GCA_001624835.1_WSB_EiJ_v1_Alignments off
        subGroups view=alignment tissue=brain
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624835.1_WSB_EiJ_v1_brain_SRR1924547
        longLabel GCA_001624835.1_WSB_EiJ_v1 brain RNASeq Alignments SRR1924547
        shortLabel GCA_001624835.1_WSB_EiJ_v1_RNASeq_SRR1924547
        bigDataUrl rnaSeqData/brain.SRR1924547.sortedByCoord.out.bam
        parent GCA_001624835.1_WSB_EiJ_v1_Alignments off
        subGroups view=alignment tissue=brain
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624835.1_WSB_EiJ_v1_brain_SRR1924548
        longLabel GCA_001624835.1_WSB_EiJ_v1 brain RNASeq Alignments SRR1924548
        shortLabel GCA_001624835.1_WSB_EiJ_v1_RNASeq_SRR1924548
        bigDataUrl rnaSeqData/brain.SRR1924548.sortedByCoord.out.bam
        parent GCA_001624835.1_WSB_EiJ_v1_Alignments off
        subGroups view=alignment tissue=brain
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624835.1_WSB_EiJ_v1_liver_SRR826396
        longLabel GCA_001624835.1_WSB_EiJ_v1 liver RNASeq Alignments SRR826396
        shortLabel GCA_001624835.1_WSB_EiJ_v1_RNASeq_SRR826396
        bigDataUrl rnaSeqData/liver.SRR826396.sortedByCoord.out.bam
        parent GCA_001624835.1_WSB_EiJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624835.1_WSB_EiJ_v1_liver_SRR826397
        longLabel GCA_001624835.1_WSB_EiJ_v1 liver RNASeq Alignments SRR826397
        shortLabel GCA_001624835.1_WSB_EiJ_v1_RNASeq_SRR826397
        bigDataUrl rnaSeqData/liver.SRR826397.sortedByCoord.out.bam
        parent GCA_001624835.1_WSB_EiJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624835.1_WSB_EiJ_v1_liver_SRR826398
        longLabel GCA_001624835.1_WSB_EiJ_v1 liver RNASeq Alignments SRR826398
        shortLabel GCA_001624835.1_WSB_EiJ_v1_RNASeq_SRR826398
        bigDataUrl rnaSeqData/liver.SRR826398.sortedByCoord.out.bam
        parent GCA_001624835.1_WSB_EiJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624835.1_WSB_EiJ_v1_liver_SRR826399
        longLabel GCA_001624835.1_WSB_EiJ_v1 liver RNASeq Alignments SRR826399
        shortLabel GCA_001624835.1_WSB_EiJ_v1_RNASeq_SRR826399
        bigDataUrl rnaSeqData/liver.SRR826399.sortedByCoord.out.bam
        parent GCA_001624835.1_WSB_EiJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624835.1_WSB_EiJ_v1_liver_SRR826400
        longLabel GCA_001624835.1_WSB_EiJ_v1 liver RNASeq Alignments SRR826400
        shortLabel GCA_001624835.1_WSB_EiJ_v1_RNASeq_SRR826400
        bigDataUrl rnaSeqData/liver.SRR826400.sortedByCoord.out.bam
        parent GCA_001624835.1_WSB_EiJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624835.1_WSB_EiJ_v1_liver_SRR826401
        longLabel GCA_001624835.1_WSB_EiJ_v1 liver RNASeq Alignments SRR826401
        shortLabel GCA_001624835.1_WSB_EiJ_v1_RNASeq_SRR826401
        bigDataUrl rnaSeqData/liver.SRR826401.sortedByCoord.out.bam
        parent GCA_001624835.1_WSB_EiJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624835.1_WSB_EiJ_v1_liver_SRR826402
        longLabel GCA_001624835.1_WSB_EiJ_v1 liver RNASeq Alignments SRR826402
        shortLabel GCA_001624835.1_WSB_EiJ_v1_RNASeq_SRR826402
        bigDataUrl rnaSeqData/liver.SRR826402.sortedByCoord.out.bam
        parent GCA_001624835.1_WSB_EiJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624835.1_WSB_EiJ_v1_liver_SRR826403
        longLabel GCA_001624835.1_WSB_EiJ_v1 liver RNASeq Alignments SRR826403
        shortLabel GCA_001624835.1_WSB_EiJ_v1_RNASeq_SRR826403
        bigDataUrl rnaSeqData/liver.SRR826403.sortedByCoord.out.bam
        parent GCA_001624835.1_WSB_EiJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624835.1_WSB_EiJ_v1_liver_SRR826404
        longLabel GCA_001624835.1_WSB_EiJ_v1 liver RNASeq Alignments SRR826404
        shortLabel GCA_001624835.1_WSB_EiJ_v1_RNASeq_SRR826404
        bigDataUrl rnaSeqData/liver.SRR826404.sortedByCoord.out.bam
        parent GCA_001624835.1_WSB_EiJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624835.1_WSB_EiJ_v1_liver_SRR826405
        longLabel GCA_001624835.1_WSB_EiJ_v1 liver RNASeq Alignments SRR826405
        shortLabel GCA_001624835.1_WSB_EiJ_v1_RNASeq_SRR826405
        bigDataUrl rnaSeqData/liver.SRR826405.sortedByCoord.out.bam
        parent GCA_001624835.1_WSB_EiJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624835.1_WSB_EiJ_v1_liver_SRR826406
        longLabel GCA_001624835.1_WSB_EiJ_v1 liver RNASeq Alignments SRR826406
        shortLabel GCA_001624835.1_WSB_EiJ_v1_RNASeq_SRR826406
        bigDataUrl rnaSeqData/liver.SRR826406.sortedByCoord.out.bam
        parent GCA_001624835.1_WSB_EiJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624835.1_WSB_EiJ_v1_liver_SRR826407
        longLabel GCA_001624835.1_WSB_EiJ_v1 liver RNASeq Alignments SRR826407
        shortLabel GCA_001624835.1_WSB_EiJ_v1_RNASeq_SRR826407
        bigDataUrl rnaSeqData/liver.SRR826407.sortedByCoord.out.bam
        parent GCA_001624835.1_WSB_EiJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624835.1_WSB_EiJ_v1_liver_SRR826408
        longLabel GCA_001624835.1_WSB_EiJ_v1 liver RNASeq Alignments SRR826408
        shortLabel GCA_001624835.1_WSB_EiJ_v1_RNASeq_SRR826408
        bigDataUrl rnaSeqData/liver.SRR826408.sortedByCoord.out.bam
        parent GCA_001624835.1_WSB_EiJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624835.1_WSB_EiJ_v1_liver_SRR826409
        longLabel GCA_001624835.1_WSB_EiJ_v1 liver RNASeq Alignments SRR826409
        shortLabel GCA_001624835.1_WSB_EiJ_v1_RNASeq_SRR826409
        bigDataUrl rnaSeqData/liver.SRR826409.sortedByCoord.out.bam
        parent GCA_001624835.1_WSB_EiJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624835.1_WSB_EiJ_v1_liver_SRR826410
        longLabel GCA_001624835.1_WSB_EiJ_v1 liver RNASeq Alignments SRR826410
        shortLabel GCA_001624835.1_WSB_EiJ_v1_RNASeq_SRR826410
        bigDataUrl rnaSeqData/liver.SRR826410.sortedByCoord.out.bam
        parent GCA_001624835.1_WSB_EiJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624835.1_WSB_EiJ_v1_liver_SRR826411
        longLabel GCA_001624835.1_WSB_EiJ_v1 liver RNASeq Alignments SRR826411
        shortLabel GCA_001624835.1_WSB_EiJ_v1_RNASeq_SRR826411
        bigDataUrl rnaSeqData/liver.SRR826411.sortedByCoord.out.bam
        parent GCA_001624835.1_WSB_EiJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

    track GCA_001624835.1_WSB_EiJ_v1_SpliceJunctions
    shortLabel Splice Junctions
    view junction
    visibility squish
    subTrack rnaSeqStar

        track GCA_001624835.1_WSB_EiJ_v1_brain_SpliceJunctions
        longLabel GCA_001624835.1_WSB_EiJ_v1 brain STAR Splice Junctions
        shortLabel GCA_001624835.1_WSB_EiJ_v1_brain_Splice_Junctions
        parent GCA_001624835.1_WSB_EiJ_v1_SpliceJunctions off
        bigDataUrl rnaSeqData/brain.filtered_splice_junctions.bb
        type bigBed 12
        colorByStrand 255,0,0 0,0,255
        subGroups view=junction tissue=brain

        track GCA_001624835.1_WSB_EiJ_v1_liver_SpliceJunctions
        longLabel GCA_001624835.1_WSB_EiJ_v1 liver STAR Splice Junctions
        shortLabel GCA_001624835.1_WSB_EiJ_v1_liver_Splice_Junctions
        parent GCA_001624835.1_WSB_EiJ_v1_SpliceJunctions off
        bigDataUrl rnaSeqData/liver.filtered_splice_junctions.bb
        type bigBed 12
        colorByStrand 255,0,0 0,0,255
        subGroups view=junction tissue=liver

