# Assembly name: gtlEnvA5udCFS # Organism name: Methanosarcina mazei (euryarchaeotes) # Infraspecific name: strain=1.H.M.2.3 # Taxid: 2209 # BioSample: SAMN02708940 # BioProject: PRJNA242781 # Submitter: University of Illinois at Urbana-Champaign # Date: 2015-04-23 # Assembly type: na # Release type: major # Assembly level: Scaffold # Genome representation: full # WGS project: JJQW01 # Assembly method: IDBA-UD v. 1.1.0 # Genome coverage: 45.2x # Sequencing technology: Illumina HiSeq # GenBank assembly accession: GCA_000980075.1 # RefSeq assembly accession: GCF_000980075.1 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_000980095.1 GCF_000980095.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name scaffold31_1_size36431-refined unplaced-scaffold na na JJQW01000001.1 = NZ_JJQW01000001.1 Primary Assembly 36331 na scaffold4_1_size93241-refined unplaced-scaffold na na JJQW01000002.1 = NZ_JJQW01000002.1 Primary Assembly 92634 na scaffold112_1_size6026-refined unplaced-scaffold na na JJQW01000003.1 = NZ_JJQW01000003.1 Primary Assembly 6026 na scaffold22_1_size53405-refined unplaced-scaffold na na JJQW01000004.1 = NZ_JJQW01000004.1 Primary Assembly 53205 na scaffold17_1_size49816-refined unplaced-scaffold na na JJQW01000005.1 = NZ_JJQW01000005.1 Primary Assembly 49448 na scaffold16_1_size49896-refined unplaced-scaffold na na JJQW01000006.1 = NZ_JJQW01000006.1 Primary Assembly 49838 na scaffold124_1_size3096-refined unplaced-scaffold na na JJQW01000007.1 = NZ_JJQW01000007.1 Primary Assembly 3034 na scaffold12_1_size59368-refined unplaced-scaffold na na JJQW01000008.1 = NZ_JJQW01000008.1 Primary Assembly 59143 na scaffold9_1_size90443-refined unplaced-scaffold na na JJQW01000009.1 = NZ_JJQW01000009.1 Primary Assembly 90266 na scaffold79_1_size15320-refined unplaced-scaffold na na JJQW01000010.1 = NZ_JJQW01000010.1 Primary Assembly 15320 na scaffold1_1_size125476-refined unplaced-scaffold na na JJQW01000011.1 = NZ_JJQW01000011.1 Primary Assembly 125110 na scaffold51_1_size25379-refined unplaced-scaffold na na JJQW01000012.1 = NZ_JJQW01000012.1 Primary Assembly 25280 na scaffold120_1_size3638-refined unplaced-scaffold na na JJQW01000013.1 = NZ_JJQW01000013.1 Primary Assembly 3638 na scaffold11_1_size62181-refined unplaced-scaffold na na JJQW01000014.1 = NZ_JJQW01000014.1 Primary Assembly 62001 na scaffold117_1_size4950-refined unplaced-scaffold na na JJQW01000015.1 = NZ_JJQW01000015.1 Primary Assembly 4868 na scaffold25_1_size41924-refined unplaced-scaffold na na JJQW01000016.1 = NZ_JJQW01000016.1 Primary Assembly 41832 na scaffold91_1_size20696-refined unplaced-scaffold na na JJQW01000017.1 = NZ_JJQW01000017.1 Primary Assembly 20696 na scaffold99_1_size9026-refined unplaced-scaffold na na JJQW01000018.1 = NZ_JJQW01000018.1 Primary Assembly 9026 na scaffold101_1_size8672-refined unplaced-scaffold na na JJQW01000019.1 = NZ_JJQW01000019.1 Primary Assembly 8672 na scaffold63_1_size21754-refined unplaced-scaffold na na JJQW01000020.1 = NZ_JJQW01000020.1 Primary Assembly 21656 na scaffold97_1_size10165-refined unplaced-scaffold na na JJQW01000021.1 = NZ_JJQW01000021.1 Primary Assembly 10165 na scaffold56_1_size22929-refined unplaced-scaffold na na JJQW01000022.1 = NZ_JJQW01000022.1 Primary Assembly 22733 na scaffold96_1_size11933-refined unplaced-scaffold na na JJQW01000023.1 = NZ_JJQW01000023.1 Primary Assembly 11933 na scaffold102_1_size8988-refined unplaced-scaffold na na JJQW01000024.1 = NZ_JJQW01000024.1 Primary Assembly 8791 na scaffold123_1_size3200-refined unplaced-scaffold na na JJQW01000025.1 = NZ_JJQW01000025.1 Primary Assembly 3200 na scaffold28_1_size106488-refined unplaced-scaffold na na JJQW01000026.1 = NZ_JJQW01000026.1 Primary Assembly 105969 na scaffold142_1_size549-refined unplaced-scaffold na na JJQW01000027.1 = NZ_JJQW01000027.1 Primary Assembly 549 na scaffold21_1_size43198-refined unplaced-scaffold na na JJQW01000028.1 = NZ_JJQW01000028.1 Primary Assembly 43117 na scaffold3_1_size167313-refined unplaced-scaffold na na JJQW01000029.1 = NZ_JJQW01000029.1 Primary Assembly 166334 na scaffold131_1_size2047-refined unplaced-scaffold na na JJQW01000030.1 = NZ_JJQW01000030.1 Primary Assembly 2047 na scaffold8_1_size108594-refined unplaced-scaffold na na JJQW01000031.1 = NZ_JJQW01000031.1 Primary Assembly 107684 na scaffold36_1_size32505-refined unplaced-scaffold na na JJQW01000032.1 = NZ_JJQW01000032.1 Primary Assembly 32457 na scaffold43_1_size33890-refined unplaced-scaffold na na JJQW01000033.1 = NZ_JJQW01000033.1 Primary Assembly 33790 na scaffold114_1_size5724-refined unplaced-scaffold na na JJQW01000034.1 = NZ_JJQW01000034.1 Primary Assembly 5505 na scaffold48_1_size26605-refined unplaced-scaffold na na JJQW01000035.1 = NZ_JJQW01000035.1 Primary Assembly 26476 na scaffold94_1_size12399-refined unplaced-scaffold na na JJQW01000036.1 = NZ_JJQW01000036.1 Primary Assembly 12399 na scaffold107_1_size6900-refined unplaced-scaffold na na JJQW01000037.1 = NZ_JJQW01000037.1 Primary Assembly 6900 na scaffold73_1_size17800-refined unplaced-scaffold na na JJQW01000038.1 = NZ_JJQW01000038.1 Primary Assembly 17800 na scaffold61_1_size21901-refined unplaced-scaffold na na JJQW01000039.1 = NZ_JJQW01000039.1 Primary Assembly 21898 na scaffold122_1_size3987-refined unplaced-scaffold na na JJQW01000040.1 = NZ_JJQW01000040.1 Primary Assembly 3786 na scaffold126_1_size2799-refined unplaced-scaffold na na JJQW01000041.1 = NZ_JJQW01000041.1 Primary Assembly 2799 na scaffold129_1_size2353-refined unplaced-scaffold na na JJQW01000042.1 = NZ_JJQW01000042.1 Primary Assembly 2353 na scaffold78_1_size15789-refined unplaced-scaffold na na JJQW01000043.1 = NZ_JJQW01000043.1 Primary Assembly 15789 na scaffold95_1_size11974-refined unplaced-scaffold na na JJQW01000044.1 = NZ_JJQW01000044.1 Primary Assembly 11974 na scaffold87_1_size13304-refined unplaced-scaffold na na JJQW01000045.1 = NZ_JJQW01000045.1 Primary Assembly 13280 na scaffold100_1_size8803-refined unplaced-scaffold na na JJQW01000046.1 = NZ_JJQW01000046.1 Primary Assembly 8803 na scaffold136_1_size1458-refined unplaced-scaffold na na JJQW01000047.1 = NZ_JJQW01000047.1 Primary Assembly 1458 na scaffold65_1_size21130-refined unplaced-scaffold na na JJQW01000048.1 = NZ_JJQW01000048.1 Primary Assembly 21130 na scaffold19_1_size47472-refined unplaced-scaffold na na JJQW01000049.1 = NZ_JJQW01000049.1 Primary Assembly 47314 na scaffold67_1_size20970-refined unplaced-scaffold na na JJQW01000050.1 = NZ_JJQW01000050.1 Primary Assembly 20970 na scaffold10_1_size76920-refined unplaced-scaffold na na JJQW01000051.1 = NZ_JJQW01000051.1 Primary Assembly 76720 na scaffold125_1_size7633-refined unplaced-scaffold na na JJQW01000052.1 = NZ_JJQW01000052.1 Primary Assembly 7433 na scaffold106_1_size7019-refined unplaced-scaffold na na JJQW01000053.1 = NZ_JJQW01000053.1 Primary Assembly 7019 na scaffold93_1_size12427-refined unplaced-scaffold na na JJQW01000054.1 = NZ_JJQW01000054.1 Primary Assembly 12329 na scaffold32_1_size35874-refined unplaced-scaffold na na JJQW01000055.1 = NZ_JJQW01000055.1 Primary Assembly 35874 na scaffold50_1_size26221-refined unplaced-scaffold na na JJQW01000056.1 = NZ_JJQW01000056.1 Primary Assembly 26221 na scaffold49_1_size38326-refined unplaced-scaffold na na JJQW01000057.1 = NZ_JJQW01000057.1 Primary Assembly 38207 na scaffold135_1_size1517-refined unplaced-scaffold na na JJQW01000058.1 = NZ_JJQW01000058.1 Primary Assembly 1517 na scaffold6_1_size84960-refined unplaced-scaffold na na JJQW01000059.1 = NZ_JJQW01000059.1 Primary Assembly 84800 na scaffold29_1_size37484-refined unplaced-scaffold na na JJQW01000060.1 = NZ_JJQW01000060.1 Primary Assembly 37484 na scaffold72_1_size17980-refined unplaced-scaffold na na JJQW01000061.1 = NZ_JJQW01000061.1 Primary Assembly 17980 na scaffold140_1_size833-refined unplaced-scaffold na na JJQW01000062.1 = NZ_JJQW01000062.1 Primary Assembly 833 na scaffold133_1_size1809-refined unplaced-scaffold na na JJQW01000063.1 = NZ_JJQW01000063.1 Primary Assembly 1809 na scaffold39_1_size32383-refined unplaced-scaffold na na JJQW01000064.1 = NZ_JJQW01000064.1 Primary Assembly 32383 na scaffold14_1_size82983-refined unplaced-scaffold na na JJQW01000065.1 = NZ_JJQW01000065.1 Primary Assembly 82569 na scaffold38_1_size32400-refined unplaced-scaffold na na JJQW01000066.1 = NZ_JJQW01000066.1 Primary Assembly 32400 na scaffold115_1_size5100-refined unplaced-scaffold na na JJQW01000067.1 = NZ_JJQW01000067.1 Primary Assembly 5100 na scaffold116_1_size5006-refined unplaced-scaffold na na JJQW01000068.1 = NZ_JJQW01000068.1 Primary Assembly 4926 na scaffold118_1_size3808-refined unplaced-scaffold na na JJQW01000069.1 = NZ_JJQW01000069.1 Primary Assembly 3808 na scaffold27_1_size40901-refined unplaced-scaffold na na JJQW01000070.1 = NZ_JJQW01000070.1 Primary Assembly 40901 na scaffold137_1_size1359-refined unplaced-scaffold na na JJQW01000071.1 = NZ_JJQW01000071.1 Primary Assembly 1359 na scaffold84_1_size13877-refined unplaced-scaffold na na JJQW01000072.1 = NZ_JJQW01000072.1 Primary Assembly 13877 na scaffold5_1_size140025-refined unplaced-scaffold na na JJQW01000073.1 = NZ_JJQW01000073.1 Primary Assembly 139440 na scaffold30_1_size37060-refined unplaced-scaffold na na JJQW01000074.1 = NZ_JJQW01000074.1 Primary Assembly 36960 na scaffold68_1_size20918-refined unplaced-scaffold na na JJQW01000075.1 = NZ_JJQW01000075.1 Primary Assembly 20893 na scaffold54_1_size23300-refined unplaced-scaffold na na JJQW01000076.1 = NZ_JJQW01000076.1 Primary Assembly 23300 na scaffold74_1_size17689-refined unplaced-scaffold na na JJQW01000077.1 = NZ_JJQW01000077.1 Primary Assembly 17689 na scaffold81_1_size14957-refined unplaced-scaffold na na JJQW01000078.1 = NZ_JJQW01000078.1 Primary Assembly 14957 na scaffold35_1_size72246-refined unplaced-scaffold na na JJQW01000079.1 = NZ_JJQW01000079.1 Primary Assembly 71766 na scaffold46_1_size34617-refined unplaced-scaffold na na JJQW01000080.1 = NZ_JJQW01000080.1 Primary Assembly 34602 na scaffold33_1_size33973-refined unplaced-scaffold na na JJQW01000081.1 = NZ_JJQW01000081.1 Primary Assembly 33895 na scaffold55_1_size23048-refined unplaced-scaffold na na JJQW01000082.1 = NZ_JJQW01000082.1 Primary Assembly 23057 na scaffold58_1_size22466-refined unplaced-scaffold na na JJQW01000083.1 = NZ_JJQW01000083.1 Primary Assembly 22208 na scaffold82_1_size14286-refined unplaced-scaffold na na JJQW01000084.1 = NZ_JJQW01000084.1 Primary Assembly 14286 na scaffold90_1_size22340-refined unplaced-scaffold na na JJQW01000085.1 = NZ_JJQW01000085.1 Primary Assembly 12738 na scaffold2_1_size124974-refined unplaced-scaffold na na JJQW01000086.1 = NZ_JJQW01000086.1 Primary Assembly 124900 na scaffold66_1_size20970-refined unplaced-scaffold na na JJQW01000087.1 = NZ_JJQW01000087.1 Primary Assembly 20970 na scaffold34_1_size33846-refined unplaced-scaffold na na JJQW01000088.1 = NZ_JJQW01000088.1 Primary Assembly 33846 na scaffold132_1_size2013-refined unplaced-scaffold na na JJQW01000089.1 = NZ_JJQW01000089.1 Primary Assembly 2013 na scaffold71_1_size18448-refined unplaced-scaffold na na JJQW01000090.1 = NZ_JJQW01000090.1 Primary Assembly 18448 na scaffold7_1_size84620-refined unplaced-scaffold na na JJQW01000091.1 = NZ_JJQW01000091.1 Primary Assembly 84320 na scaffold24_1_size42631-refined unplaced-scaffold na na JJQW01000092.1 = NZ_JJQW01000092.1 Primary Assembly 42631 na scaffold127_1_size2752-refined unplaced-scaffold na na JJQW01000093.1 = NZ_JJQW01000093.1 Primary Assembly 2752 na scaffold52_1_size24411-refined unplaced-scaffold na na JJQW01000094.1 = NZ_JJQW01000094.1 Primary Assembly 24411 na scaffold104_1_size7255-refined unplaced-scaffold na na JJQW01000095.1 = NZ_JJQW01000095.1 Primary Assembly 7162 na scaffold80_1_size15031-refined unplaced-scaffold na na JJQW01000096.1 = NZ_JJQW01000096.1 Primary Assembly 15031 na scaffold89_1_size12915-refined unplaced-scaffold na na JJQW01000097.1 = NZ_JJQW01000097.1 Primary Assembly 12915 na scaffold53_1_size24336-refined unplaced-scaffold na na JJQW01000098.1 = NZ_JJQW01000098.1 Primary Assembly 24090 na scaffold85_1_size13606-refined unplaced-scaffold na na JJQW01000099.1 = NZ_JJQW01000099.1 Primary Assembly 13392 na scaffold83_1_size14005-refined unplaced-scaffold na na JJQW01000100.1 = NZ_JJQW01000100.1 Primary Assembly 14005 na scaffold77_1_size16194-refined unplaced-scaffold na na JJQW01000101.1 = NZ_JJQW01000101.1 Primary Assembly 16194 na scaffold37_1_size32433-refined unplaced-scaffold na na JJQW01000102.1 = NZ_JJQW01000102.1 Primary Assembly 32353 na scaffold70_1_size21746-refined unplaced-scaffold na na JJQW01000103.1 = NZ_JJQW01000103.1 Primary Assembly 21523 na scaffold44_1_size30327-refined unplaced-scaffold na na JJQW01000104.1 = NZ_JJQW01000104.1 Primary Assembly 30227 na scaffold13_1_size55284-refined unplaced-scaffold na na JJQW01000105.1 = NZ_JJQW01000105.1 Primary Assembly 55186 na scaffold119_1_size3651-refined unplaced-scaffold na na JJQW01000106.1 = NZ_JJQW01000106.1 Primary Assembly 3651 na scaffold92_1_size12442-refined unplaced-scaffold na na JJQW01000107.1 = NZ_JJQW01000107.1 Primary Assembly 12442 na scaffold76_1_size16793-refined unplaced-scaffold na na JJQW01000108.1 = NZ_JJQW01000108.1 Primary Assembly 16793 na scaffold42_1_size30567-refined unplaced-scaffold na na JJQW01000109.1 = NZ_JJQW01000109.1 Primary Assembly 30202 na scaffold113_1_size8364-refined unplaced-scaffold na na JJQW01000110.1 = NZ_JJQW01000110.1 Primary Assembly 8364 na scaffold18_1_size91777-refined unplaced-scaffold na na JJQW01000111.1 = NZ_JJQW01000111.1 Primary Assembly 91578 na scaffold20_1_size93790-refined unplaced-scaffold na na JJQW01000112.1 = NZ_JJQW01000112.1 Primary Assembly 93599 na scaffold105_1_size7076-refined unplaced-scaffold na na JJQW01000113.1 = NZ_JJQW01000113.1 Primary Assembly 7076 na scaffold45_1_size29931-refined unplaced-scaffold na na JJQW01000114.1 = NZ_JJQW01000114.1 Primary Assembly 29669 na scaffold108_1_size6865-refined unplaced-scaffold na na JJQW01000115.1 = NZ_JJQW01000115.1 Primary Assembly 6865 na scaffold110_1_size6627-refined unplaced-scaffold na na JJQW01000116.1 = NZ_JJQW01000116.1 Primary Assembly 6627 na scaffold109_1_size6629-refined unplaced-scaffold na na JJQW01000117.1 = NZ_JJQW01000117.1 Primary Assembly 6629 na scaffold60_1_size22085-refined unplaced-scaffold na na JJQW01000118.1 = NZ_JJQW01000118.1 Primary Assembly 22085 na scaffold86_1_size13388-refined unplaced-scaffold na na JJQW01000119.1 = NZ_JJQW01000119.1 Primary Assembly 13388 na scaffold64_1_size21350-refined unplaced-scaffold na na JJQW01000120.1 = NZ_JJQW01000120.1 Primary Assembly 21350 na scaffold88_1_size13009-refined unplaced-scaffold na na JJQW01000121.1 = NZ_JJQW01000121.1 Primary Assembly 13009 na scaffold15_1_size53925-refined unplaced-scaffold na na JJQW01000122.1 = NZ_JJQW01000122.1 Primary Assembly 53805 na scaffold128_1_size2673-refined unplaced-scaffold na na JJQW01000123.1 = NZ_JJQW01000123.1 Primary Assembly 2673 na scaffold138_1_size1348-refined unplaced-scaffold na na JJQW01000124.1 = NZ_JJQW01000124.1 Primary Assembly 1348 na scaffold98_1_size9909-refined unplaced-scaffold na na JJQW01000125.1 = NZ_JJQW01000125.1 Primary Assembly 9909 na scaffold111_1_size6321-refined unplaced-scaffold na na JJQW01000126.1 = NZ_JJQW01000126.1 Primary Assembly 6321 na scaffold134_1_size3004-refined unplaced-scaffold na na JJQW01000127.1 = NZ_JJQW01000127.1 Primary Assembly 3004 na scaffold62_1_size21890-refined unplaced-scaffold na na JJQW01000128.1 = NZ_JJQW01000128.1 Primary Assembly 21890 na scaffold121_1_size3618-refined unplaced-scaffold na na JJQW01000129.1 = NZ_JJQW01000129.1 Primary Assembly 3518 na scaffold57_1_size22383-refined unplaced-scaffold na na JJQW01000130.1 = NZ_JJQW01000130.1 Primary Assembly 22383 na scaffold75_1_size17008-refined unplaced-scaffold na na JJQW01000131.1 = NZ_JJQW01000131.1 Primary Assembly 17008 na scaffold23_1_size60972-refined unplaced-scaffold na na JJQW01000132.1 = NZ_JJQW01000132.1 Primary Assembly 60672 na scaffold59_1_size23430-refined unplaced-scaffold na na JJQW01000133.1 = NZ_JJQW01000133.1 Primary Assembly 23331 na scaffold103_1_size7994-refined unplaced-scaffold na na JJQW01000134.1 = NZ_JJQW01000134.1 Primary Assembly 7994 na scaffold141_1_size743-refined unplaced-scaffold na na JJQW01000135.1 = NZ_JJQW01000135.1 Primary Assembly 743 na scaffold40_1_size41849-refined unplaced-scaffold na na JJQW01000136.1 = NZ_JJQW01000136.1 Primary Assembly 41849 na scaffold47_1_size26827-refined unplaced-scaffold na na JJQW01000137.1 = NZ_JJQW01000137.1 Primary Assembly 26650 na scaffold130_1_size2091-refined unplaced-scaffold na na JJQW01000138.1 = NZ_JJQW01000138.1 Primary Assembly 2091 na scaffold41_1_size31714-refined unplaced-scaffold na na JJQW01000139.1 = NZ_JJQW01000139.1 Primary Assembly 31714 na scaffold139_1_size874-refined unplaced-scaffold na na JJQW01000140.1 = NZ_JJQW01000140.1 Primary Assembly 874 na scaffold26_1_size41665-refined unplaced-scaffold na na JJQW01000141.1 = NZ_JJQW01000141.1 Primary Assembly 41665 na scaffold69_1_size20887-refined unplaced-scaffold na na JJQW01000142.1 = NZ_JJQW01000142.1 Primary Assembly 20899 na