This directory contains a dump of the UCSC genome annotation database
for the Sep. 2004 cow genome assembled by the Baylor College of Medicine
Human Genome Sequencing Center (bosTau1, BCM HGSC Btau_1.0). For more
information about this assembly, see the Baylor web page at
http://www.hgsc.bcm.tmc.edu/projects/bovine/.
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=bosTau1
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
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If you plan to download a large file or multiple files from this directory,
we recommend you use ftp rather than downloading the files via our website.
To do so, ftp to hgdownload.cse.ucsc.edu, then go to the directory
goldenPath/bosTau1/database/. To download multiple files, use the
"mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
Please review the restrictions on the use of the cow assembly data at
http://www.hgsc.bcm.tmc.edu/projects/conditions_for_use.html.
Name Last modified Size Description
Parent Directory -
all_est.sql 2008-03-25 13:33 2.2K
all_est.txt.gz 2008-03-25 13:34 55M
all_mrna.sql 2008-09-09 03:33 2.2K
all_mrna.txt.gz 2008-09-09 03:33 1.9M
author.sql 2008-09-09 03:30 1.2K
author.txt.gz 2008-09-09 03:30 4.8M
blastHg17KG.sql 2008-03-25 13:35 2.2K
blastHg17KG.txt.gz 2008-03-25 13:35 2.4M
cds.sql 2008-09-09 03:33 1.2K
cds.txt.gz 2008-09-09 03:33 1.5M
cell.sql 2008-05-06 03:29 1.2K
cell.txt.gz 2008-05-06 03:29 1.1K
chainHg17.sql 2008-03-25 13:35 1.7K
chainHg17.txt.gz 2008-03-25 13:37 133M
chainHg17Link.sql 2008-03-25 13:40 1.4K
chainHg17Link.txt.gz 2008-03-25 13:51 689M
chainMm6.sql 2008-03-25 14:05 1.7K
chainMm6.txt.gz 2008-03-25 14:06 67M
chainMm6Link.sql 2008-03-25 14:07 1.4K
chainMm6Link.txt.gz 2008-03-25 14:15 437M
chromInfo.sql 2008-03-25 14:25 1.2K
chromInfo.txt.gz 2008-03-25 14:25 2.0M
contigAcc.sql 2008-03-25 14:25 1.2K
contigAcc.txt.gz 2008-03-25 14:25 3.7M
cpgIslandExt.sql 2008-03-25 14:25 1.6K
cpgIslandExt.txt.gz 2008-03-25 14:25 721K
description.sql 2008-09-09 03:31 1.2K
description.txt.gz 2008-09-09 03:31 9.9M
development.sql 2008-03-25 14:26 1.2K
development.txt.gz 2008-03-25 14:26 1.9K
estOrientInfo.sql 2008-03-25 14:26 1.7K
estOrientInfo.txt.gz 2008-03-25 14:26 19M
gap.sql 2008-03-25 14:26 1.6K
gap.txt.gz 2008-03-25 14:26 3.2M
gbCdnaInfo.sql 2008-09-09 03:33 2.6K
gbCdnaInfo.txt.gz 2008-09-09 03:34 21M
gbDelete_tmp.sql 2008-03-25 14:27 1.2K
gbDelete_tmp.txt.gz 2008-03-25 14:27 157K
gbExtFile.sql 2008-09-09 03:31 1.2K
gbExtFile.txt.gz 2008-09-09 03:31 2.0K
gbLoaded.sql 2008-09-09 03:31 1.5K
gbLoaded.txt.gz 2008-09-09 03:31 57K
gbMiscDiff.sql 2008-08-19 03:40 1.3K
gbMiscDiff.txt.gz 2008-08-19 03:40 2.9K
gbSeq.sql 2008-09-09 03:32 1.6K
gbSeq.txt.gz 2008-09-09 03:32 28M
gbStatus.sql 2008-09-09 03:30 1.9K
gbStatus.txt.gz 2008-09-09 03:31 13M
gbWarn.sql 2008-05-06 03:32 1.2K
gbWarn.txt.gz 2008-05-06 03:32 31
gc5Base.sql 2008-03-25 14:29 1.7K
gc5Base.txt.gz 2008-03-25 14:29 17M
geneName.sql 2008-09-09 03:31 1.2K
geneName.txt.gz 2008-09-09 03:31 3.2M
geneid.sql 2008-03-25 14:29 1.9K
geneid.txt.gz 2008-03-25 14:30 10M
geneidPep.sql 2008-03-25 14:30 1.1K
geneidPep.txt.gz 2008-03-25 14:30 12M
genscan.sql 2008-03-25 14:30 1.6K
genscan.txt.gz 2008-03-25 14:30 3.2M
genscanPep.sql 2008-03-25 14:30 1.2K
genscanPep.txt.gz 2008-03-25 14:30 10M
gold.sql 2008-03-25 14:30 1.6K
gold.txt.gz 2008-03-25 14:30 10M
grp.sql 2008-03-25 14:30 1.2K
grp.txt.gz 2008-03-25 14:30 204
hgFindSpec.sql 2008-03-25 14:30 1.7K
hgFindSpec.txt.gz 2008-03-25 14:30 603
history.sql 2008-03-25 14:30 1.4K
history.txt.gz 2008-03-25 14:30 312
imageClone.sql 2008-09-09 03:30 1.3K
imageClone.txt.gz 2008-09-09 03:30 2.6M
intronEst.sql 2008-03-25 14:30 2.2K
intronEst.txt.gz 2008-03-25 14:31 24M
keyword.sql 2008-09-09 03:29 1.2K
keyword.txt.gz 2008-09-09 03:29 24K
library.sql 2008-03-25 14:31 1.2K
library.txt.gz 2008-03-25 14:31 48K
mgcFullMrna.sql 2008-03-25 14:43 2.1K
mgcFullMrna.txt.gz 2008-03-25 14:43 3.4K
mgcGenes.sql 2008-03-25 14:43 1.9K
mgcGenes.txt.gz 2008-03-25 14:43 2.5K
mrnaClone.sql 2008-03-25 14:31 1.2K
mrnaClone.txt.gz 2008-03-25 14:31 5.1M
mrnaOrientInfo.sql 2008-09-09 03:33 1.7K
mrnaOrientInfo.txt.gz 2008-09-09 03:33 607K
netHg17.sql 2008-03-25 14:31 2.2K
netHg17.txt.gz 2008-03-25 14:33 68M
netMm6.sql 2008-03-25 14:34 2.2K
netMm6.txt.gz 2008-03-25 14:35 53M
organism.sql 2008-09-09 03:29 1.2K
organism.txt.gz 2008-09-09 03:29 1.0K
productName.sql 2008-09-09 03:30 1.2K
productName.txt.gz 2008-09-09 03:30 3.2M
quality.sql 2008-03-25 14:36 1.7K
quality.txt.gz 2008-03-25 14:38 64M
refLink.sql 2008-09-09 03:32 1.6K
refLink.txt.gz 2008-09-09 03:32 5.8M
refSeqStatus.sql 2008-09-09 03:30 1.4K
refSeqStatus.txt.gz 2008-09-09 03:30 724K
refSeqSummary.sql 2008-09-09 03:31 1.3K
refSeqSummary.txt.gz 2008-09-09 03:31 4.7M
rmsk.sql 2008-03-25 14:39 1.9K
rmsk.txt.gz 2008-03-25 14:40 101M
sex.sql 2008-03-25 14:42 1.2K
sex.txt.gz 2008-03-25 14:42 194
simpleRepeat.sql 2008-03-25 14:42 2.0K
simpleRepeat.txt.gz 2008-03-25 14:42 6.3M
source.sql 2008-09-09 03:30 1.2K
source.txt.gz 2008-09-09 03:30 1.4K
tableDescriptions.sql 2008-05-18 03:15 1.2K
tableDescriptions.txt.gz 2008-05-18 03:15 6.7K
tissue.sql 2008-08-05 03:49 1.2K
tissue.txt.gz 2008-08-05 03:49 6.3K
trackDb.sql 2008-06-01 03:15 2.0K
trackDb.txt.gz 2008-06-01 03:15 12K
xenoRefFlat.sql 2008-09-09 03:29 1.7K
xenoRefFlat.txt.gz 2008-09-09 03:30 12M
xenoRefGene.sql 2008-09-09 03:31 1.6K
xenoRefGene.txt.gz 2008-09-09 03:32 11M
xenoRefSeqAli.sql 2008-09-09 03:33 2.2K
xenoRefSeqAli.txt.gz 2008-09-09 03:33 16M