This directory contains reciprocal-best netted chains for canFam4-canFam3. - canFam4.canFam3.rbest.net.gz: canFam4-referenced recip.best net to canFam3. - canFam4.canFam3.rbest.chain.gz: chains extracted from the recip.best net. These can be passed to the liftOver program to translate coords from canFam4 to canFam3 through the recip.best net. - canFam3.canFam4.rbest.net.gz: canFam3-referenced recip.best net. - canFam3.canFam4.rbest.chain.gz: recip.best "liftOver" chains. - axtRBestNet/canFam4.canFam3.rbest.axt.gz reciprocal best alignments in AXT format See also, description of AXT format:: http://genome.ucsc.edu/goldenPath/help/axt.html description of CHAIN format: http://genome.ucsc.edu/goldenPath/help/chain.html description of NET format: http://genome.ucsc.edu/goldenPath/help/net.html
Name Last modified Size Description
Parent Directory - axtRBestNet/ 2020-07-07 18:32 - md5sum.txt 2020-05-13 14:29 256 canFam4.canFam3.rbest.net.gz 2020-05-13 14:29 9.3M canFam4.canFam3.rbest.chain.gz 2020-05-13 14:29 5.1M canFam3.canFam4.rbest.chain.gz 2020-05-13 14:29 5.2M canFam3.canFam4.rbest.net.gz 2020-05-13 14:28 7.8M