This directory contains reciprocal-best netted chains for galGal6-colStr1.
- galGal6.colStr1.rbest.net.gz: galGal6-referenced recip.best net to colStr1.
- galGal6.colStr1.rbest.chain.gz: chains extracted from the recip.best
net. These can be passed to the liftOver program to translate coords
from galGal6 to colStr1 through the recip.best net.
- colStr1.galGal6.rbest.net.gz: colStr1-referenced recip.best net.
- colStr1.galGal6.rbest.chain.gz: recip.best "liftOver" chains.
- axtRBestNet/galGal6.colStr1.rbest.axt.gz reciprocal best alignments in
AXT format
See also, description of AXT format::
http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
http://genome.ucsc.edu/goldenPath/help/net.html
Name Last modified Size Description
Parent Directory -
md5sum.txt 2018-10-19 00:24 256
galGal6.colStr1.rbest.net.gz 2018-10-19 00:24 71M
galGal6.colStr1.rbest.chain.gz 2018-10-19 00:23 45M
colStr1.galGal6.rbest.net.gz 2018-10-19 00:21 79M
colStr1.galGal6.rbest.chain.gz 2018-10-19 00:22 45M
axtRBestNet/ 2018-10-19 07:38 -