This directory contains reciprocal-best netted chains for geoFor1-galGal6.
- geoFor1.galGal6.rbest.net.gz: geoFor1-referenced recip.best net to galGal6.
- geoFor1.galGal6.rbest.chain.gz: chains extracted from the recip.best
net. These can be passed to the liftOver program to translate coords
from geoFor1 to galGal6 through the recip.best net.
- galGal6.geoFor1.rbest.net.gz: galGal6-referenced recip.best net.
- galGal6.geoFor1.rbest.chain.gz: recip.best "liftOver" chains.
- axtRBestNet/geoFor1.galGal6.rbest.axt.gz reciprocal best alignments in
AXT format
See also, description of AXT format::
http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
http://genome.ucsc.edu/goldenPath/help/net.html
Name Last modified Size Description
Parent Directory -
axtRBestNet/ 2018-10-26 06:35 -
galGal6.geoFor1.rbest.chain.gz 2018-10-25 22:54 45M
galGal6.geoFor1.rbest.net.gz 2018-10-25 22:53 78M
geoFor1.galGal6.rbest.chain.gz 2018-10-25 22:55 45M
geoFor1.galGal6.rbest.net.gz 2018-10-25 22:56 76M
md5sum.txt 2018-10-25 22:56 256