This directory contains the Dec 22, 2001 GenBank freeze assembled by
NCBI. The annotations are from UCSC and collaborators worldwide.
chromFa.zip - The working draft sequence chromosome in one file
per chromosome. Repeats are in lower case while
non-repeating sequence is in upper case.
contigFa.zip - The working draft sequence one file per NCBI
contig. All contigs are in forward orientation relative
to the chromosome. This means some will be reversed relative
to how they are at NCBI. Repeats are in lower case while
non-repeating sequence is in upper case.
contigAgp.zip - Description of how the working draft was generated from
fragments at a contig layout level.
chromAgp.zip - Similar to contigAGP.zip, but it unpacks to one file per
chromosome.
contigOut.zip - RepeatMasker .out file for contigs. These were done
with RepeatMasker at the -s sensitive setting.
chromOut.zip - RepeatMasker .out file for chromosomes. These were done
with RepeatMasker at the -s sensitive setting.
database.zip - The genome browser database as tab-delimited files
and associated MySQL table-creation tiles.
liftAll.zip - A file that contains the offsets of contigs within
chromosomes.
Name Last modified Size Description
Parent Directory -
mrna.zip 2002-04-29 08:35 35M
chromFa.zip 2002-02-17 16:11 892M
contigOut.zip 2002-02-17 15:09 148M
contigFa.zip 2002-02-17 15:08 891M
contigAgp.zip 2002-02-17 15:06 2.4M
database.zip 2002-02-17 13:36 1.0G
chromOut.zip 2002-02-17 12:42 147M
liftAll.zip 2002-02-17 12:42 39K
chromAgp.zip 2002-02-17 12:31 1.9M