The file: hg17.gc5Base.txt.gz is the raw data used to encode the gc5Base track on hg17. This file was produced from the hg17.2bit sequence with the kent source tree utility hgGcPercent thusly: hgGcPercent -wigOut -doGaps -file=stdout -win=5 hg17 hg17.2bit \ | gzip > hg17.gc5Base.txt.gz The format of the data is variableStep wiggle data described at: http://genome.ucsc.edu/goldenPath/help/wiggle.html with a "span" size of 5 bases. Each value is for a window size of 5 bases. Thus, possible values are: 0, 20, 40, 60, 80, 100 for a GC count of: 0, 1, 2, 3, 4, 5 respectively. Note: the chromosome coordinates given are 1-relative coordinates. The first nucleotide on a chromosome is numbered 1. Example data from chr10: variableStep chrom=chr10 span=5 50001 20 50006 60 50011 80 50016 0 ... etc ... Meaning base positions 50,001 through 50,005 have value 20, base positions 50,006 through 50,010 have value 60, etc ...
Name Last modified Size Description
Parent Directory - hg17.gc5Base.txt.gz 2007-08-29 14:07 1.4G