[DIR] Parent Directory

This directory contains data generated by the Myers/HudsonAlpha lab as part of the ENCODE project.

Gene expression data for stem cells can be downloaded from NCBI's GEO (accession number: GSE14966) here

Further information is available in the HAIB Methyl-seq track description.

This is Release 2 of this track. Release notes are included in the track description.

There are two files within this directory that contain information about the downloads:
  • files.txt which is a tab-separated file with the name and metadata for each download.
  • md5sum.txt which is a list of the md5sum output for each download.

    • Data is RESTRICTED FROM USE in publication until the restriction date noted for the given data file.

    RESTRICTED
    until    		  FileSizeSubmitted  Details
      2009-11-10wgEncodeHudsonalphaMethylSeqRegionsRep1Bg02es.bed9.gz  998K  2009-02-10  cell=BG02ES; dataType=MethylSeq; lab=HudsonAlpha; type=bed; replicate=1; subId=204; grant=Myers; dataVersion=ENCODE July 2009 Freeze; tableName=wgEncodeHudsonalphaMethylSeqRegionsRep1Bg02es
      2009-11-10wgEncodeHudsonalphaMethylSeqRegionsRep1Bg02esebd.bed9.gz  998K  2009-02-10  cell=BG02ES-EBD; dataType=MethylSeq; lab=HudsonAlpha; type=bed; replicate=1; subId=204; grant=Myers; dataVersion=ENCODE July 2009 Freeze; tableName=wgEncodeHudsonalphaMethylSeqRegionsRep1Bg02esebd
      2009-11-10wgEncodeHudsonalphaMethylSeqRegionsRep2Bg02esebd.bed9.gz  998K  2009-02-10  cell=BG02ES-EBD; dataType=MethylSeq; lab=HudsonAlpha; type=bed; replicate=2; subId=204; grant=Myers; dataVersion=ENCODE July 2009 Freeze; tableName=wgEncodeHudsonalphaMethylSeqRegionsRep2Bg02esebd
      2010-04-15wgEncodeHudsonalphaMethylSeqRegionsRep1Gm12878.bed9.gz  981K  2009-07-15  cell=GM12878; dataType=MethylSeq; lab=HudsonAlpha; type=bed; replicate=1; subId=387; grant=Myers; softwareVersion=myerslab; dataVersion=ENCODE July 2009 Freeze; tableName=wgEncodeHudsonalphaMethylSeqRegionsRep1Gm12878
      2010-04-15wgEncodeHudsonalphaMethylSeqRegionsRep2Gm12878.bed9.gz  970K  2009-07-15  cell=GM12878; dataType=MethylSeq; lab=HudsonAlpha; type=bed; replicate=2; subId=387; grant=Myers; softwareVersion=myerslab; dataVersion=ENCODE July 2009 Freeze; tableName=wgEncodeHudsonalphaMethylSeqRegionsRep2Gm12878
      2010-04-15wgEncodeHudsonalphaMethylSeqRawDataRep1Gm12878Hpa.fastq.gz  217M  2009-07-15  cell=GM12878; dataType=MethylSeq; lab=HudsonAlpha; type=fastq; view=RawData; replicate=1; subId=387; grant=Myers; restrictionEnzyme=hpa; softwareVersion=myerslab; dataVersion=ENCODE July 2009 Freeze
      2010-04-15wgEncodeHudsonalphaMethylSeqRawDataRep1Gm12878Msp.fastq.gz  281M  2009-07-15  cell=GM12878; dataType=MethylSeq; lab=HudsonAlpha; type=fastq; view=RawData; replicate=1; subId=387; grant=Myers; restrictionEnzyme=msp; softwareVersion=myerslab; dataVersion=ENCODE July 2009 Freeze
      2010-04-15wgEncodeHudsonalphaMethylSeqRawDataRep2Gm12878Hpa.fastq.gz  193M  2009-07-15  cell=GM12878; dataType=MethylSeq; lab=HudsonAlpha; type=fastq; view=RawData; replicate=2; subId=387; grant=Myers; restrictionEnzyme=hpa; softwareVersion=myerslab; dataVersion=ENCODE July 2009 Freeze
      2010-04-15wgEncodeHudsonalphaMethylSeqRawDataRep2Gm12878Msp.fastq.gz  247M  2009-07-15  cell=GM12878; dataType=MethylSeq; lab=HudsonAlpha; type=fastq; view=RawData; replicate=2; subId=387; grant=Myers; restrictionEnzyme=msp; softwareVersion=myerslab; dataVersion=ENCODE July 2009 Freeze
      2010-04-15wgEncodeHudsonalphaMethylSeqAlignmentsRep1Gm12878Hpa.tagAlign.gz  184M  2009-07-15  cell=GM12878; dataType=MethylSeq; lab=HudsonAlpha; type=tagAlign; view=Alignments; replicate=1; subId=387; grant=Myers; restrictionEnzyme=hpa; softwareVersion=myerslab; dataVersion=ENCODE July 2009 Freeze
      2010-04-15wgEncodeHudsonalphaMethylSeqAlignmentsRep1Gm12878Msp.tagAlign.gz  115M  2009-07-15  cell=GM12878; dataType=MethylSeq; lab=HudsonAlpha; type=tagAlign; view=Alignments; replicate=1; subId=387; grant=Myers; restrictionEnzyme=msp; softwareVersion=myerslab; dataVersion=ENCODE July 2009 Freeze
      2010-04-15wgEncodeHudsonalphaMethylSeqAlignmentsRep2Gm12878Hpa.tagAlign.gz  159M  2009-07-15  cell=GM12878; dataType=MethylSeq; lab=HudsonAlpha; type=tagAlign; view=Alignments; replicate=2; subId=387; grant=Myers; restrictionEnzyme=hpa; softwareVersion=myerslab; dataVersion=ENCODE July 2009 Freeze
      2010-04-15wgEncodeHudsonalphaMethylSeqAlignmentsRep2Gm12878Msp.tagAlign.gz  89M  2009-07-15  cell=GM12878; dataType=MethylSeq; lab=HudsonAlpha; type=tagAlign; view=Alignments; replicate=2; subId=387; grant=Myers; restrictionEnzyme=msp; softwareVersion=myerslab; dataVersion=ENCODE July 2009 Freeze
      2010-08-25wgEncodeHudsonalphaMethylSeqRegionsRep1Gm12891.bed9.gz  905K  2009-11-25  cell=GM12891; dataType=MethylSeq; lab=HudsonAlpha; type=bed; view=Regions; replicate=1; subId=794; grant=Myers; softwareVersion=myerslab; dataVersion=ENCODE Jan 2010 Freeze; tableName=wgEncodeHudsonalphaMethylSeqRegionsRep1Gm12891
      2010-08-25wgEncodeHudsonalphaMethylSeqRegionsRep2Gm12891.bed9.gz  941K  2009-11-25  cell=GM12891; dataType=MethylSeq; lab=HudsonAlpha; type=bed; view=Regions; replicate=2; subId=794; grant=Myers; softwareVersion=myerslab; dataVersion=ENCODE Jan 2010 Freeze; tableName=wgEncodeHudsonalphaMethylSeqRegionsRep2Gm12891
      2010-08-25wgEncodeHudsonalphaMethylSeqRawDataRep1Gm12891Hpa.fastq.gz  835M  2009-11-25  cell=GM12891; dataType=MethylSeq; lab=HudsonAlpha; type=fastq; view=RawData; replicate=1; subId=794; grant=Myers; restrictionEnzyme=hpa; softwareVersion=myerslab; dataVersion=ENCODE Jan 2010 Freeze
      2010-08-25wgEncodeHudsonalphaMethylSeqRawDataRep1Gm12891Msp.fastq.gz  873M  2009-11-25  cell=GM12891; dataType=MethylSeq; lab=HudsonAlpha; type=fastq; view=RawData; replicate=1; subId=794; grant=Myers; restrictionEnzyme=msp; softwareVersion=myerslab; dataVersion=ENCODE Jan 2010 Freeze
      2010-08-25wgEncodeHudsonalphaMethylSeqRawDataRep2Gm12891Hpa.fastq.gz  887M  2009-11-25  cell=GM12891; dataType=MethylSeq; lab=HudsonAlpha; type=fastq; view=RawData; replicate=2; subId=794; grant=Myers; restrictionEnzyme=hpa; softwareVersion=myerslab; dataVersion=ENCODE Jan 2010 Freeze
      2010-08-25wgEncodeHudsonalphaMethylSeqRawDataRep2Gm12891Msp.fastq.gz  916M  2009-11-25  cell=GM12891; dataType=MethylSeq; lab=HudsonAlpha; type=fastq; view=RawData; replicate=2; subId=794; grant=Myers; restrictionEnzyme=msp; softwareVersion=myerslab; dataVersion=ENCODE Jan 2010 Freeze
      2010-08-25wgEncodeHudsonalphaMethylSeqAlignmentsRep1Gm12891Hpa.tagAlign.gz  272M  2009-11-25  cell=GM12891; dataType=MethylSeq; lab=HudsonAlpha; type=tagAlign; view=Alignments; replicate=1; subId=794; grant=Myers; restrictionEnzyme=hpa; softwareVersion=myerslab; dataVersion=ENCODE Jan 2010 Freeze
      2010-08-25wgEncodeHudsonalphaMethylSeqAlignmentsRep1Gm12891Msp.tagAlign.gz  241M  2009-11-25  cell=GM12891; dataType=MethylSeq; lab=HudsonAlpha; type=tagAlign; view=Alignments; replicate=1; subId=794; grant=Myers; restrictionEnzyme=msp; softwareVersion=myerslab; dataVersion=ENCODE Jan 2010 Freeze
      2010-08-25wgEncodeHudsonalphaMethylSeqAlignmentsRep2Gm12891Hpa.tagAlign.gz  149M  2009-11-25  cell=GM12891; dataType=MethylSeq; lab=HudsonAlpha; type=tagAlign; view=Alignments; replicate=2; subId=794; grant=Myers; restrictionEnzyme=hpa; softwareVersion=myerslab; dataVersion=ENCODE Jan 2010 Freeze
      2010-08-25wgEncodeHudsonalphaMethylSeqAlignmentsRep2Gm12891Msp.tagAlign.gz  210M  2009-11-25  cell=GM12891; dataType=MethylSeq; lab=HudsonAlpha; type=tagAlign; view=Alignments; replicate=2; subId=794; grant=Myers; restrictionEnzyme=msp; softwareVersion=myerslab; dataVersion=ENCODE Jan 2010 Freeze
      2010-08-29wgEncodeHudsonalphaMethylSeqRegionsRep1Gm12892.bed9.gz  1004K  2009-11-30  cell=GM12892; dataType=MethylSeq; lab=HudsonAlpha; type=bed; view=Regions; replicate=1; subId=796; grant=Myers; softwareVersion=myerslab; dataVersion=ENCODE Jan 2010 Freeze; tableName=wgEncodeHudsonalphaMethylSeqRegionsRep1Gm12892
      2010-08-29wgEncodeHudsonalphaMethylSeqRegionsRep2Gm12892.bed9.gz  861K  2009-11-30  cell=GM12892; dataType=MethylSeq; lab=HudsonAlpha; type=bed; view=Regions; replicate=2; subId=796; grant=Myers; softwareVersion=myerslab; dataVersion=ENCODE Jan 2010 Freeze; tableName=wgEncodeHudsonalphaMethylSeqRegionsRep2Gm12892
      2010-08-29wgEncodeHudsonalphaMethylSeqRawDataRep1Gm12892Hpa.fastq.gz  870M  2009-11-30  cell=GM12892; dataType=MethylSeq; lab=HudsonAlpha; type=fastq; view=RawData; replicate=1; subId=796; grant=Myers; restrictionEnzyme=hpa; softwareVersion=myerslab; dataVersion=ENCODE Jan 2010 Freeze
      2010-08-29wgEncodeHudsonalphaMethylSeqRawDataRep1Gm12892Msp.fastq.gz  873M  2009-11-30  cell=GM12892; dataType=MethylSeq; lab=HudsonAlpha; type=fastq; view=RawData; replicate=1; subId=796; grant=Myers; restrictionEnzyme=msp; softwareVersion=myerslab; dataVersion=ENCODE Jan 2010 Freeze
      2010-08-29wgEncodeHudsonalphaMethylSeqRawDataRep2Gm12892Hpa.fastq.gz  808M  2009-11-30  cell=GM12892; dataType=MethylSeq; lab=HudsonAlpha; type=fastq; view=RawData; replicate=2; subId=796; grant=Myers; restrictionEnzyme=hpa; softwareVersion=myerslab; dataVersion=ENCODE Jan 2010 Freeze
      2010-08-29wgEncodeHudsonalphaMethylSeqRawDataRep2Gm12892Msp.fastq.gz  834M  2009-11-30  cell=GM12892; dataType=MethylSeq; lab=HudsonAlpha; type=fastq; view=RawData; replicate=2; subId=796; grant=Myers; restrictionEnzyme=msp; softwareVersion=myerslab; dataVersion=ENCODE Jan 2010 Freeze
      2010-08-29wgEncodeHudsonalphaMethylSeqAlignmentsRep1Gm12892Hpa.tagAlign.gz  253M  2009-11-30  cell=GM12892; dataType=MethylSeq; lab=HudsonAlpha; type=tagAlign; view=Alignments; replicate=1; subId=796; grant=Myers; restrictionEnzyme=hpa; softwareVersion=myerslab; dataVersion=ENCODE Jan 2010 Freeze
      2010-08-29wgEncodeHudsonalphaMethylSeqAlignmentsRep1Gm12892Msp.tagAlign.gz  248M  2009-11-30  cell=GM12892; dataType=MethylSeq; lab=HudsonAlpha; type=tagAlign; view=Alignments; replicate=1; subId=796; grant=Myers; restrictionEnzyme=msp; softwareVersion=myerslab; dataVersion=ENCODE Jan 2010 Freeze
      2010-08-29wgEncodeHudsonalphaMethylSeqAlignmentsRep2Gm12892Hpa.tagAlign.gz  217M  2009-11-30  cell=GM12892; dataType=MethylSeq; lab=HudsonAlpha; type=tagAlign; view=Alignments; replicate=2; subId=796; grant=Myers; restrictionEnzyme=hpa; softwareVersion=myerslab; dataVersion=ENCODE Jan 2010 Freeze
      2010-08-29wgEncodeHudsonalphaMethylSeqAlignmentsRep2Gm12892Msp.tagAlign.gz  260M  2009-11-30  cell=GM12892; dataType=MethylSeq; lab=HudsonAlpha; type=tagAlign; view=Alignments; replicate=2; subId=796; grant=Myers; restrictionEnzyme=msp; softwareVersion=myerslab; dataVersion=ENCODE Jan 2010 Freeze
      2010-10-07wgEncodeHudsonalphaMethylSeqRegionsRep1H1hesc.bed9.gz  1.2M  2010-01-07  cell=H1-hESC; dataType=MethylSeq; treatment=None; protocol=PCR1x; lab=HudsonAlpha; type=bed; view=Regions; replicate=1; subId=887; grant=Myers; restrictionEnzyme=None; softwareVersion=SL605; dataVersion=ENCODE Jan 2010 Freeze; tableName=wgEncodeHudsonalphaMethylSeqRegionsRep1H1hesc
      2010-10-07wgEncodeHudsonalphaMethylSeqRegionsRep2H1hesc.bed9.gz  1.2M  2010-01-07  cell=H1-hESC; dataType=MethylSeq; treatment=None; protocol=PCR1x; lab=HudsonAlpha; type=bed; view=Regions; replicate=2; subId=887; grant=Myers; restrictionEnzyme=None; softwareVersion=SL659; dataVersion=ENCODE Jan 2010 Freeze; tableName=wgEncodeHudsonalphaMethylSeqRegionsRep2H1hesc
      2010-10-07wgEncodeHudsonalphaMethylSeqRawDataRep2H1hescHpa.fastq.gz  795M  2010-01-07  cell=H1-hESC; dataType=MethylSeq; treatment=None; protocol=PCR1x; lab=HudsonAlpha; type=fastq; view=RawData; replicate=2; subId=887; grant=Myers; restrictionEnzyme=hpa; softwareVersion=SL659; dataVersion=ENCODE Jan 2010 Freeze
      2010-10-07wgEncodeHudsonalphaMethylSeqRawDataRep2H1hescMsp.fastq.gz  770M  2010-01-07  cell=H1-hESC; dataType=MethylSeq; treatment=None; protocol=PCR1x; lab=HudsonAlpha; type=fastq; view=RawData; replicate=2; subId=887; grant=Myers; restrictionEnzyme=msp; softwareVersion=SL659; dataVersion=ENCODE Jan 2010 Freeze
      2010-10-07wgEncodeHudsonalphaMethylSeqAlignmentsRep2H1hescHpa.tagAlign.gz  286M  2010-01-07  cell=H1-hESC; dataType=MethylSeq; treatment=None; protocol=PCR1x; lab=HudsonAlpha; type=tagAlign; view=Alignments; replicate=2; subId=887; grant=Myers; restrictionEnzyme=hpa; softwareVersion=SL659; dataVersion=ENCODE Jan 2010 Freeze
      2010-10-07wgEncodeHudsonalphaMethylSeqAlignmentsRep2H1hescMsp.tagAlign.gz  262M  2010-01-07  cell=H1-hESC; dataType=MethylSeq; treatment=None; protocol=PCR1x; lab=HudsonAlpha; type=tagAlign; view=Alignments; replicate=2; subId=887; grant=Myers; restrictionEnzyme=msp; softwareVersion=SL659; dataVersion=ENCODE Jan 2010 Freeze
      2010-10-07wgEncodeHudsonalphaMethylSeqRawDataRep1H1hescHpa.fastq.gz  1.2G  2010-01-07  cell=H1-hESC; dataType=MethylSeq; treatment=None; protocol=PCR2x; lab=HudsonAlpha; type=fastq; view=RawData; replicate=1; subId=887; grant=Myers; restrictionEnzyme=hpa; softwareVersion=SL605; dataVersion=ENCODE Jan 2010 Freeze
      2010-10-07wgEncodeHudsonalphaMethylSeqRawDataRep1H1hescMsp.fastq.gz  1.8G  2010-01-07  cell=H1-hESC; dataType=MethylSeq; treatment=None; protocol=PCR2x; lab=HudsonAlpha; type=fastq; view=RawData; replicate=1; subId=887; grant=Myers; restrictionEnzyme=msp; softwareVersion=SL605; dataVersion=ENCODE Jan 2010 Freeze
      2010-10-07wgEncodeHudsonalphaMethylSeqAlignmentsRep1H1hescHpa.tagAlign.gz  279M  2010-01-07  cell=H1-hESC; dataType=MethylSeq; treatment=None; protocol=PCR2x; lab=HudsonAlpha; type=tagAlign; view=Alignments; replicate=1; subId=887; grant=Myers; restrictionEnzyme=hpa; softwareVersion=SL605; dataVersion=ENCODE Jan 2010 Freeze
      2010-10-07wgEncodeHudsonalphaMethylSeqAlignmentsRep1H1hescMsp.tagAlign.gz  287M  2010-01-07  cell=H1-hESC; dataType=MethylSeq; treatment=None; protocol=PCR2x; lab=HudsonAlpha; type=tagAlign; view=Alignments; replicate=1; subId=887; grant=Myers; restrictionEnzyme=msp; softwareVersion=SL605; dataVersion=ENCODE Jan 2010 Freeze
      2009-11-10wgEncodeHudsonalphaMethylSeqRegionsRep1H9esafpPos.bed9.gz  998K  2009-02-10  cell=H9ES-AFP+; dataType=MethylSeq; lab=HudsonAlpha; type=bed; replicate=1; subId=204; grant=Myers; dataVersion=ENCODE July 2009 Freeze; tableName=wgEncodeHudsonalphaMethylSeqRegionsRep1H9esafpPos
      2009-11-10wgEncodeHudsonalphaMethylSeqRegionsRep1H9esafpNeg.bed9.gz  998K  2009-02-10  cell=H9ES-AFP-; dataType=MethylSeq; lab=HudsonAlpha; type=bed; replicate=1; subId=204; grant=Myers; dataVersion=ENCODE July 2009 Freeze; tableName=wgEncodeHudsonalphaMethylSeqRegionsRep1H9esafpNeg
      2009-11-10wgEncodeHudsonalphaMethylSeqRegionsRep1H9escm.bed9.gz  998K  2009-02-10  cell=H9ES-CM; dataType=MethylSeq; lab=HudsonAlpha; type=bed; replicate=1; subId=204; grant=Myers; dataVersion=ENCODE July 2009 Freeze; tableName=wgEncodeHudsonalphaMethylSeqRegionsRep1H9escm
      2009-11-10wgEncodeHudsonalphaMethylSeqRegionsRep1H9es.bed9.gz  998K  2009-02-10  cell=H9ES-E; dataType=MethylSeq; lab=HudsonAlpha; type=bed; replicate=1; subId=204; grant=Myers; dataVersion=ENCODE July 2009 Freeze; tableName=wgEncodeHudsonalphaMethylSeqRegionsRep1H9ese
      2009-11-10wgEncodeHudsonalphaMethylSeqRegionsRep1H9ese.bed9.gz  998K  2009-02-10  cell=H9ES-E; dataType=MethylSeq; lab=HudsonAlpha; type=bed; replicate=1; subId=204; grant=Myers; dataVersion=ENCODE July 2009 Freeze; tableName=wgEncodeHudsonalphaMethylSeqRegionsRep1H9ese
      2009-11-10wgEncodeHudsonalphaMethylSeqRegionsRep1H9eseb.bed9.gz  998K  2009-02-10  cell=H9ES-EB; dataType=MethylSeq; lab=HudsonAlpha; type=bed; replicate=1; subId=204; grant=Myers; dataVersion=ENCODE July 2009 Freeze; tableName=wgEncodeHudsonalphaMethylSeqRegionsRep1H9eseb
      2009-11-10wgEncodeHudsonalphaMethylSeqRegionsRep1H9esebd.bed9.gz  998K  2009-02-10  cell=H9ES-EBD; dataType=MethylSeq; lab=HudsonAlpha; type=bed; replicate=1; subId=204; grant=Myers; dataVersion=ENCODE July 2009 Freeze; tableName=wgEncodeHudsonalphaMethylSeqRegionsRep1H9esebd
      2009-11-10wgEncodeHudsonalphaMethylSeqRegionsRep1Hal.bed9.gz  998K  2009-02-10  cell=HAL; dataType=MethylSeq; lab=HudsonAlpha; type=bed; replicate=1; subId=204; grant=Myers; dataVersion=ENCODE July 2009 Freeze; tableName=wgEncodeHudsonalphaMethylSeqRegionsRep1Hal
      2009-11-10wgEncodeHudsonalphaMethylSeqRegionsRep1Hct116.bed9.gz  998K  2009-02-10  cell=HCT-116; dataType=MethylSeq; lab=HudsonAlpha; type=bed; replicate=1; subId=204; grant=Myers; dataVersion=ENCODE July 2009 Freeze; tableName=wgEncodeHudsonalphaMethylSeqRegionsRep1Hct116
      2009-11-10wgEncodeHudsonalphaMethylSeqRegionsRep2Hct116.bed9.gz  998K  2009-02-10  cell=HCT-116; dataType=MethylSeq; lab=HudsonAlpha; type=bed; replicate=2; subId=204; grant=Myers; dataVersion=ENCODE July 2009 Freeze; tableName=wgEncodeHudsonalphaMethylSeqRegionsRep2Hct116
      2009-11-10wgEncodeHudsonalphaMethylSeqRegionsRep1Hfl11w.bed9.gz  998K  2009-02-10  cell=HFL11W; dataType=MethylSeq; lab=HudsonAlpha; type=bed; replicate=1; subId=204; grant=Myers; dataVersion=ENCODE July 2009 Freeze; tableName=wgEncodeHudsonalphaMethylSeqRegionsRep1Hfl11w
      2009-11-10wgEncodeHudsonalphaMethylSeqRegionsRep1Hfl24w.bed9.gz  998K  2009-02-10  cell=HFL24W; dataType=MethylSeq; lab=HudsonAlpha; type=bed; replicate=1; subId=204; grant=Myers; dataVersion=ENCODE July 2009 Freeze; tableName=wgEncodeHudsonalphaMethylSeqRegionsRep1Hfl24w
      2010-10-07wgEncodeHudsonalphaMethylSeqRegionsRep1Helas3Pcr2x.bed9.gz  1.2M  2010-01-07  cell=HeLa-S3; dataType=MethylSeq; treatment=None; protocol=PCR1x; lab=HudsonAlpha; type=bed; view=Regions; replicate=1; subId=905; grant=Myers; restrictionEnzyme=None; labVersion=SL577; softwareVersion=MACS; dataVersion=ENCODE Jan 2010 Freeze; tableName=wgEncodeHudsonalphaMethylSeqRegionsRep1Helas3Pcr2x
      2010-10-07wgEncodeHudsonalphaMethylSeqRegionsRep2Helas3Pcr2x.bed9.gz  1.2M  2010-01-07  cell=HeLa-S3; dataType=MethylSeq; treatment=None; protocol=PCR1x; lab=HudsonAlpha; type=bed; view=Regions; replicate=2; subId=905; grant=Myers; restrictionEnzyme=None; labVersion=SL603; softwareVersion=MACS; dataVersion=ENCODE Jan 2010 Freeze; tableName=wgEncodeHudsonalphaMethylSeqRegionsRep2Helas3Pcr2x
      2010-10-07wgEncodeHudsonalphaMethylSeqRawDataRep1Helas3HpaPcr2x.fastq.gz  2.3G  2010-01-07  cell=HeLa-S3; dataType=MethylSeq; treatment=None; protocol=PCR2x; lab=HudsonAlpha; type=fastq; view=RawData; replicate=1; subId=905; grant=Myers; restrictionEnzyme=hpa; labVersion=SL577; dataVersion=ENCODE Jan 2010 Freeze
      2010-10-07wgEncodeHudsonalphaMethylSeqRawDataRep1Helas3MspPcr2x.fastq.gz  1.7G  2010-01-07  cell=HeLa-S3; dataType=MethylSeq; treatment=None; protocol=PCR2x; lab=HudsonAlpha; type=fastq; view=RawData; replicate=1; subId=905; grant=Myers; restrictionEnzyme=msp; labVersion=SL574; dataVersion=ENCODE Jan 2010 Freeze
      2010-10-07wgEncodeHudsonalphaMethylSeqRawDataRep2Helas3HpaPcr2x.fastq.gz  1.9G  2010-01-07  cell=HeLa-S3; dataType=MethylSeq; treatment=None; protocol=PCR2x; lab=HudsonAlpha; type=fastq; view=RawData; replicate=2; subId=905; grant=Myers; restrictionEnzyme=hpa; labVersion=SL603; dataVersion=ENCODE Jan 2010 Freeze
      2010-10-07wgEncodeHudsonalphaMethylSeqRawDataRep2Helas3MspPcr2x.fastq.gz  2.0G  2010-01-07  cell=HeLa-S3; dataType=MethylSeq; treatment=None; protocol=PCR2x; lab=HudsonAlpha; type=fastq; view=RawData; replicate=2; subId=905; grant=Myers; restrictionEnzyme=msp; labVersion=SL602; dataVersion=ENCODE Jan 2010 Freeze
      2010-10-07wgEncodeHudsonalphaMethylSeqAlignmentsRep1Helas3HpaPcr2x.tagAlign.gz  594M  2010-01-07  cell=HeLa-S3; dataType=MethylSeq; treatment=None; protocol=PCR2x; lab=HudsonAlpha; type=tagAlign; view=Alignments; replicate=1; subId=905; grant=Myers; restrictionEnzyme=hpa; labVersion=SL577; dataVersion=ENCODE Jan 2010 Freeze
      2010-10-07wgEncodeHudsonalphaMethylSeqAlignmentsRep1Helas3MspPcr2x.tagAlign.gz  367M  2010-01-07  cell=HeLa-S3; dataType=MethylSeq; treatment=None; protocol=PCR2x; lab=HudsonAlpha; type=tagAlign; view=Alignments; replicate=1; subId=905; grant=Myers; restrictionEnzyme=msp; labVersion=SL574; dataVersion=ENCODE Jan 2010 Freeze
      2010-10-07wgEncodeHudsonalphaMethylSeqAlignmentsRep2Helas3HpaPcr2x.tagAlign.gz  444M  2010-01-07  cell=HeLa-S3; dataType=MethylSeq; treatment=None; protocol=PCR2x; lab=HudsonAlpha; type=tagAlign; view=Alignments; replicate=2; subId=905; grant=Myers; restrictionEnzyme=hpa; labVersion=SL603; dataVersion=ENCODE Jan 2010 Freeze
      2010-10-07wgEncodeHudsonalphaMethylSeqAlignmentsRep2Helas3MspPcr2x.tagAlign.gz  424M  2010-01-07  cell=HeLa-S3; dataType=MethylSeq; treatment=None; protocol=PCR2x; lab=HudsonAlpha; type=tagAlign; view=Alignments; replicate=2; subId=905; grant=Myers; restrictionEnzyme=msp; labVersion=SL602; dataVersion=ENCODE Jan 2010 Freeze
      2010-10-07wgEncodeHudsonalphaMethylSeqRegionsRep1Hepg2Pcr2x.bed9.gz  1.2M  2010-01-07  cell=HepG2; dataType=MethylSeq; treatment=None; protocol=PCR1x; lab=HudsonAlpha; type=bed; view=Regions; replicate=1; subId=905; grant=Myers; restrictionEnzyme=None; labVersion=SL578; softwareVersion=MACS; dataVersion=ENCODE Jan 2010 Freeze; tableName=wgEncodeHudsonalphaMethylSeqRegionsRep1Hepg2Pcr2x
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