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Parent DirectoryThis directory contains data generated by the Myers/HudsonAlpha lab as part of the ENCODE project. Further information is available in the HudsonAlpha RnaSeq track description.
Data is RESTRICTED FROM USE in publication until the restriction date noted for the given data file.
| RESTRICTED until | File | Size | Submitted | Details |
|---|---|---|---|---|
| 2010-10-06 | wgEncodeHudsonalphaRnaSeqRPKMRep1A549CellPapErng3R1x36Dexa.bed12.gz | 1.9M | 2010-01-07 | dataType=RnaSeq; cell=A549; rnaExtract=longPolyA; localization=cell; treatment=DEX_100nM; replicate=1; subId=902; dataVersion=ENCODE Jan 2010 Freeze; grant=Myers; lab=HudsonAlpha; labVersion=SL330; softwareVersion=MACS; mapAlgorithm=erng3; view=RPKM; type=bed; tableName=wgEncodeHudsonalphaRnaSeqRPKMRep1A549CellPapErng3R1x36Dexa; readType=1x36 |
| 2010-10-06 | wgEncodeHudsonalphaRnaSeqAlignsRep1A549CellPapErng3R1x36Dexa.tagAlign.gz | 135M | 2010-01-07 | dataType=RnaSeq; cell=A549; rnaExtract=longPolyA; localization=cell; treatment=DEX_100nM; replicate=1; subId=902; dataVersion=ENCODE Jan 2010 Freeze; grant=Myers; lab=HudsonAlpha; labVersion=SL330; mapAlgorithm=erng3; view=Aligns; type=bigBed; tableName=wgEncodeHudsonalphaRnaSeqAlignsRep1A549CellPapErng3R1x36Dexa; readType=1x36 |
| 2010-10-06 | wgEncodeHudsonalphaRnaSeqRPKMRep2A549CellPapErng3R1x36Dexa.bed12.gz | 1.9M | 2010-01-07 | dataType=RnaSeq; cell=A549; rnaExtract=longPolyA; localization=cell; treatment=DEX_100nM; replicate=2; subId=902; dataVersion=ENCODE Jan 2010 Freeze; grant=Myers; lab=HudsonAlpha; labVersion=SL332; softwareVersion=MACS; mapAlgorithm=erng3; view=RPKM; type=bed; tableName=wgEncodeHudsonalphaRnaSeqRPKMRep2A549CellPapErng3R1x36Dexa; readType=1x36 |
| 2010-10-06 | wgEncodeHudsonalphaRnaSeqAlignsRep2A549CellPapErng3R1x36Dexa.tagAlign.gz | 140M | 2010-01-07 | dataType=RnaSeq; cell=A549; rnaExtract=longPolyA; localization=cell; treatment=DEX_100nM; replicate=2; subId=902; dataVersion=ENCODE Jan 2010 Freeze; grant=Myers; lab=HudsonAlpha; labVersion=SL332; mapAlgorithm=erng3; view=Aligns; type=bigBed; tableName=wgEncodeHudsonalphaRnaSeqAlignsRep2A549CellPapErng3R1x36Dexa; readType=1x36 |
| 2010-10-06 | wgEncodeHudsonalphaRnaSeqAlignsRep1A549CellPapErng3R1x36Etoh02.tagAlign.gz | 127M | 2010-01-07 | dataType=RnaSeq; cell=A549; rnaExtract=longPolyA; localization=cell; treatment=EtOH_0.02pct; replicate=1; subId=902; dataVersion=ENCODE Jan 2010 Freeze; grant=Myers; lab=HudsonAlpha; labVersion=SL331 (Control); mapAlgorithm=erng3; view=Aligns; type=bigBed; tableName=wgEncodeHudsonalphaRnaSeqAlignsRep1A549CellPapErng3R1x36Etoh02; readType=1x36 |
| 2010-10-06 | wgEncodeHudsonalphaRnaSeqRPKMRep1A549CellPapErng3R1x36Etoh02.bed12.gz | 1.9M | 2010-01-07 | dataType=RnaSeq; cell=A549; rnaExtract=longPolyA; localization=cell; treatment=EtOH_0.02pct; replicate=1; subId=902; dataVersion=ENCODE Jan 2010 Freeze; grant=Myers; lab=HudsonAlpha; labVersion=SL331 (Control); mapAlgorithm=erng3; view=RPKM; type=bed; tableName=wgEncodeHudsonalphaRnaSeqRPKMRep1A549CellPapErng3R1x36Etoh02; readType=1x36 |
| 2010-10-06 | wgEncodeHudsonalphaRnaSeqAlignsRep2A549CellPapErng3R1x36Etoh02.tagAlign.gz | 133M | 2010-01-07 | dataType=RnaSeq; cell=A549; rnaExtract=longPolyA; localization=cell; treatment=EtOH_0.02pct; replicate=2; subId=902; dataVersion=ENCODE Jan 2010 Freeze; grant=Myers; lab=HudsonAlpha; labVersion=SL333 (Control); mapAlgorithm=erng3; view=Aligns; type=bigBed; tableName=wgEncodeHudsonalphaRnaSeqAlignsRep2A549CellPapErng3R1x36Etoh02; readType=1x36 |
| 2010-10-06 | wgEncodeHudsonalphaRnaSeqRPKMRep2A549CellPapErng3R1x36Etoh02.bed12.gz | 1.9M | 2010-01-07 | dataType=RnaSeq; cell=A549; rnaExtract=longPolyA; localization=cell; treatment=EtOH_0.02pct; replicate=2; subId=902; dataVersion=ENCODE Jan 2010 Freeze; grant=Myers; lab=HudsonAlpha; labVersion=SL333 (Control); mapAlgorithm=erng3; view=RPKM; type=bed; tableName=wgEncodeHudsonalphaRnaSeqRPKMRep2A549CellPapErng3R1x36Etoh02; readType=1x36 |
| 2010-10-15 | wgEncodeHudsonalphaRnaSeqAlignsRep1JurkatCellPapBow10R1x25.tagAlign.gz | 106M | 2010-01-16 | dataType=RnaSeq; cell=Jurkat; rnaExtract=longPolyA; localization=cell; treatment=None; replicate=1; subId=1084; dataVersion=ENCODE Jan 2010 Freeze; grant=Myers; lab=HudsonAlpha; labVersion=SL316; mapAlgorithm=bow10; view=Aligns; type=bigBed; tableName=wgEncodeHudsonalphaRnaSeqAlignsRep1JurkatCellPapBow10R1x25; readType=1x25 |
| 2010-10-15 | wgEncodeHudsonalphaRnaSeqRPKMRep1JurkatCellPapBow10R1x25.bed12.gz | 1.9M | 2010-01-16 | dataType=RnaSeq; cell=Jurkat; rnaExtract=longPolyA; localization=cell; treatment=None; replicate=1; subId=1084; dataVersion=ENCODE Jan 2010 Freeze; grant=Myers; lab=HudsonAlpha; labVersion=SL316; mapAlgorithm=bow10; view=RPKM; type=bed; tableName=wgEncodeHudsonalphaRnaSeqRPKMRep1JurkatCellPapBow10R1x25; readType=1x25 |
| 2010-10-15 | wgEncodeHudsonalphaRnaSeqAlignsRep2JurkatCellPapBow10R1x25.tagAlign.gz | 92M | 2010-01-16 | dataType=RnaSeq; cell=Jurkat; rnaExtract=longPolyA; localization=cell; treatment=None; replicate=2; subId=1084; dataVersion=ENCODE Jan 2010 Freeze; grant=Myers; lab=HudsonAlpha; labVersion=SL317; mapAlgorithm=bow10; view=Aligns; type=bigBed; tableName=wgEncodeHudsonalphaRnaSeqAlignsRep2JurkatCellPapBow10R1x25; readType=1x25 |
| 2010-10-15 | wgEncodeHudsonalphaRnaSeqRPKMRep2JurkatCellPapBow10R1x25.bed12.gz | 1.9M | 2010-01-16 | dataType=RnaSeq; cell=Jurkat; rnaExtract=longPolyA; localization=cell; treatment=None; replicate=2; subId=1084; dataVersion=ENCODE Jan 2010 Freeze; grant=Myers; lab=HudsonAlpha; labVersion=SL317; mapAlgorithm=bow10; view=RPKM; type=bed; tableName=wgEncodeHudsonalphaRnaSeqRPKMRep2JurkatCellPapBow10R1x25; readType=1x25 |