[DIR] Parent Directory

This directory contains data generated by the Gingeras/RIKEN lab as part of the ENCODE project.

Further information is available in the ENCODE RIKEN RNA Subcellular Localization by CAGE Tags track description.

This is Release 2 of this track. Release notes are included in the track description.

There are two files within this directory that contain information about the downloads:
  • files.txt which is a tab-separated file with the name and metadata for each download.
  • md5sum.txt which is a list of the md5sum output for each download.

    • Data is RESTRICTED FROM USE in publication until the restriction date noted for the given data file.

    RESTRICTED
    until    		  FileSizeSubmitted  Details
      2009-12-09wgEncodeRikenCageAlignmentsGm12878CytosolLongnonpolya.tagAlign.gz  23M  2009-03-09  dataType=Cage; cell=GM12878; rnaExtract=longNonPolyA; localization=cytosol; subId=232; dataVersion=ENCODE Feb 2009 Freeze; grant=Gingeras; lab=Riken; view=Alignments; type=bed; tableName=wgEncodeRikenCageAlignmentsGm12878CytosolLongnonpolya
      2009-12-09wgEncodeRikenCageMinusClustersGm12878CytosolLongnonpolya.bedGraph4.gz  2.1M  2009-03-09  dataType=Cage; cell=GM12878; rnaExtract=longNonPolyA; localization=cytosol; subId=232; dataVersion=ENCODE Feb 2009 Freeze; grant=Gingeras; lab=Riken; view=MinusClusters; type=bedGraph; tableName=wgEncodeRikenCageMinusClustersGm12878CytosolLongnonpolya
      2009-12-09wgEncodeRikenCagePlusClustersGm12878CytosolLongnonpolya.bedGraph4.gz  2.1M  2009-03-09  dataType=Cage; cell=GM12878; rnaExtract=longNonPolyA; localization=cytosol; subId=232; dataVersion=ENCODE Feb 2009 Freeze; grant=Gingeras; lab=Riken; view=PlusClusters; type=bedGraph; tableName=wgEncodeRikenCagePlusClustersGm12878CytosolLongnonpolya
      2009-12-09wgEncodeRikenCageRawDataGm12878CytosolLongnonpolya.fastq.gz  562M  2009-03-09  dataType=Cage; cell=GM12878; rnaExtract=longNonPolyA; localization=cytosol; subId=232; dataVersion=ENCODE Feb 2009 Freeze; grant=Gingeras; lab=Riken; view=RawData; type=fastq
      2009-12-09wgEncodeRikenCageAlignmentsGm12878NucleusLongnonpolya.tagAlign.gz  49M  2009-03-09  dataType=Cage; cell=GM12878; rnaExtract=longNonPolyA; localization=nucleus; subId=232; dataVersion=ENCODE Feb 2009 Freeze; grant=Gingeras; lab=Riken; view=Alignments; type=bed; tableName=wgEncodeRikenCageAlignmentsGm12878NucleusLongnonpolya
      2009-12-09wgEncodeRikenCageMinusClustersGm12878NucleusLongnonpolya.bedGraph4.gz  5.3M  2009-03-09  dataType=Cage; cell=GM12878; rnaExtract=longNonPolyA; localization=nucleus; subId=232; dataVersion=ENCODE Feb 2009 Freeze; grant=Gingeras; lab=Riken; view=MinusClusters; type=bedGraph; tableName=wgEncodeRikenCageMinusClustersGm12878NucleusLongnonpolya
      2009-12-09wgEncodeRikenCagePlusClustersGm12878NucleusLongnonpolya.bedGraph4.gz  5.4M  2009-03-09  dataType=Cage; cell=GM12878; rnaExtract=longNonPolyA; localization=nucleus; subId=232; dataVersion=ENCODE Feb 2009 Freeze; grant=Gingeras; lab=Riken; view=PlusClusters; type=bedGraph; tableName=wgEncodeRikenCagePlusClustersGm12878NucleusLongnonpolya
      2009-12-09wgEncodeRikenCageRawDataGm12878NucleusLongnonpolya.fastq.gz  654M  2009-03-09  dataType=Cage; cell=GM12878; rnaExtract=longNonPolyA; localization=nucleus; subId=232; dataVersion=ENCODE Feb 2009 Freeze; grant=Gingeras; lab=Riken; view=RawData; type=fastq
      2010-10-13wgEncodeRikenCageAlignmentsGm12878NucleolusTotal.tagAlign.gz  115M  2010-01-14  dataType=Cage; cell=GM12878; rnaExtract=total; localization=nucleolus; subId=1001; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Riken; softwareVersion=1.3.5; view=Alignments; type=bigBed; tableName=wgEncodeRikenCageAlignmentsGm12878NucleolusTotal; accession=Nexalign
      2010-10-13wgEncodeRikenCageRawData3Gm12878NucleolusTotal.fastq.gz  1.2G  2010-01-14  dataType=Cage; cell=GM12878; rnaExtract=total; localization=nucleolus; subId=1001; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Riken; view=RawData3; type=fastq
      2010-10-13wgEncodeRikenCageMinusClustersGm12878NucleolusTotal.bedGraph4.gz  14M  2010-01-13  dataType=Cage; cell=GM12878; rnaExtract=total; localization=nucleolus; subId=1021; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Riken; view=MinusClusters; type=bedGraph; tableName=wgEncodeRikenCageMinusClustersGm12878NucleolusTotal
      2010-10-13wgEncodeRikenCagePlusClustersGm12878NucleolusTotal.bedGraph4.gz  15M  2010-01-13  dataType=Cage; cell=GM12878; rnaExtract=total; localization=nucleolus; subId=1021; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Riken; view=PlusClusters; type=bedGraph; tableName=wgEncodeRikenCagePlusClustersGm12878NucleolusTotal
      2010-10-13wgEncodeRikenCageAlignmentsH1hescCellLongnonpolya.tagAlign.gz  48M  2010-01-13  dataType=Cage; cell=H1-hESC; rnaExtract=longNonPolyA; localization=cell; subId=1002; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Riken; view=Alignments; type=bigBed; tableName=wgEncodeRikenCageAlignmentsH1hescCellLongnonpolya
      2010-10-13wgEncodeRikenCageRawData3H1hescCellLongnonpolya.fastq.gz  933M  2010-01-13  dataType=Cage; cell=H1-hESC; rnaExtract=longNonPolyA; localization=cell; subId=1002; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Riken; view=RawData3; type=fastq
      2010-10-13wgEncodeRikenCageMinusClustersH1hescCellLongnonpolya.bedGraph4.gz  4.7M  2010-01-13  dataType=Cage; cell=H1-hESC; rnaExtract=longNonPolyA; localization=cell; subId=1022; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Riken; view=MinusClusters; type=bedGraph; tableName=wgEncodeRikenCageMinusClustersH1hescCellLongnonpolya
      2010-10-13wgEncodeRikenCagePlusClustersH1hescCellLongnonpolya.bedGraph4.gz  4.9M  2010-01-13  dataType=Cage; cell=H1-hESC; rnaExtract=longNonPolyA; localization=cell; subId=1022; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Riken; view=PlusClusters; type=bedGraph; tableName=wgEncodeRikenCagePlusClustersH1hescCellLongnonpolya
      2010-10-13wgEncodeRikenCageAlignmentsHuvecCytosolLongnonpolya.tagAlign.gz  49M  2010-01-13  dataType=Cage; cell=HUVEC; rnaExtract=longNonPolyA; localization=cytosol; subId=1014; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Riken; softwareVersion=Nexalign1.3.5; view=Alignments; type=bigBed; tableName=wgEncodeRikenCageAlignmentsHuvecCytosolLongnonpolya
      2010-10-13wgEncodeRikenCageRawData3HuvecCytosolLongnonpolya.fastq.gz  499M  2010-01-13  dataType=Cage; cell=HUVEC; rnaExtract=longNonPolyA; localization=cytosol; subId=1014; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Riken; view=RawData3; type=fastq
      2010-10-14wgEncodeRikenCageMinusClustersHuvecCytosolLongnonpolya.bedGraph4.gz  4.6M  2010-01-14  dataType=Cage; cell=HUVEC; rnaExtract=longNonPolyA; localization=cytosol; subId=1023; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Riken; view=MinusClusters; type=bedGraph; tableName=wgEncodeRikenCageMinusClustersHuvecCytosolLongnonpolya
      2010-10-14wgEncodeRikenCagePlusClustersHuvecCytosolLongnonpolya.bedGraph4.gz  4.6M  2010-01-14  dataType=Cage; cell=HUVEC; rnaExtract=longNonPolyA; localization=cytosol; subId=1023; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Riken; view=PlusClusters; type=bedGraph; tableName=wgEncodeRikenCagePlusClustersHuvecCytosolLongnonpolya
      2010-10-13wgEncodeRikenCageAlignmentsHepg2CytosolLongnonpolya.tagAlign.gz  46M  2010-01-14  dataType=Cage; cell=HepG2; rnaExtract=longNonPolyA; localization=cytosol; subId=1015; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Riken; softwareVersion=Nexalign1.3.5; view=Alignments; type=bigBed; tableName=wgEncodeRikenCageAlignmentsHepg2CytosolLongnonpolya
      2010-10-13wgEncodeRikenCageRawData3Hepg2CytosolLongnonpolya.fastq.gz  534M  2010-01-14  dataType=Cage; cell=HepG2; rnaExtract=longNonPolyA; localization=cytosol; subId=1015; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Riken; view=RawData3; type=fastq
      2010-10-13wgEncodeRikenCageMinusClustersHepg2CytosolLongnonpolya.bedGraph4.gz  3.8M  2010-01-13  dataType=Cage; cell=HepG2; rnaExtract=longNonPolyA; localization=cytosol; subId=1019; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Riken; view=MinusClusters; type=bedGraph; tableName=wgEncodeRikenCageMinusClustersHepg2CytosolLongnonpolya
      2010-10-13wgEncodeRikenCagePlusClustersHepg2CytosolLongnonpolya.bedGraph4.gz  3.8M  2010-01-13  dataType=Cage; cell=HepG2; rnaExtract=longNonPolyA; localization=cytosol; subId=1019; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Riken; view=PlusClusters; type=bedGraph; tableName=wgEncodeRikenCagePlusClustersHepg2CytosolLongnonpolya
      2010-10-13wgEncodeRikenCageAlignmentsHepg2NucleusLongnonpolya.tagAlign.gz  161M  2010-01-14  dataType=Cage; cell=HepG2; rnaExtract=longNonPolyA; localization=nucleus; subId=1015; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Riken; softwareVersion=Nexalign1.3.5; view=Alignments; type=bigBed; tableName=wgEncodeRikenCageAlignmentsHepg2NucleusLongnonpolya
      2010-10-13wgEncodeRikenCageRawData3Hepg2NucleusLongnonpolya.fastq.gz  779M  2010-01-14  dataType=Cage; cell=HepG2; rnaExtract=longNonPolyA; localization=nucleus; subId=1015; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Riken; view=RawData3; type=fastq
      2010-10-13wgEncodeRikenCageMinusClustersHepg2NucleusLongnonpolya.bedGraph4.gz  24M  2010-01-13  dataType=Cage; cell=HepG2; rnaExtract=longNonPolyA; localization=nucleus; subId=1019; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Riken; view=MinusClusters; type=bedGraph; tableName=wgEncodeRikenCageMinusClustersHepg2NucleusLongnonpolya
      2010-10-13wgEncodeRikenCagePlusClustersHepg2NucleusLongnonpolya.bedGraph4.gz  24M  2010-01-13  dataType=Cage; cell=HepG2; rnaExtract=longNonPolyA; localization=nucleus; subId=1019; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Riken; view=PlusClusters; type=bedGraph; tableName=wgEncodeRikenCagePlusClustersHepg2NucleusLongnonpolya
      2010-10-13wgEncodeRikenCageAlignmentsHepg2NucleolusTotal.tagAlign.gz  156M  2010-01-14  dataType=Cage; cell=HepG2; rnaExtract=total; localization=nucleolus; subId=1015; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Riken; softwareVersion=Nexalign1.3.5; view=Alignments; type=bigBed; tableName=wgEncodeRikenCageAlignmentsHepg2NucleolusTotal
      2010-10-13wgEncodeRikenCageRawData3Hepg2NucleolusTotal.fastq.gz  1.5G  2010-01-14  dataType=Cage; cell=HepG2; rnaExtract=total; localization=nucleolus; subId=1015; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Riken; view=RawData3; type=fastq
      2010-10-13wgEncodeRikenCageMinusClustersHepg2NucleolusTotal.bedGraph4.gz  18M  2010-01-13  dataType=Cage; cell=HepG2; rnaExtract=total; localization=nucleolus; subId=1019; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Riken; view=MinusClusters; type=bedGraph; tableName=wgEncodeRikenCageMinusClustersHepg2NucleolusTotal
      2010-10-13wgEncodeRikenCagePlusClustersHepg2NucleolusTotal.bedGraph4.gz  18M  2010-01-13  dataType=Cage; cell=HepG2; rnaExtract=total; localization=nucleolus; subId=1019; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Riken; view=PlusClusters; type=bedGraph; tableName=wgEncodeRikenCagePlusClustersHepg2NucleolusTotal
      2009-09-09wgEncodeRikenCageAlignmentsK562CytosolLongnonpolya.tagAlign.gz  119M  2008-12-09  dataType=Cage; cell=K562; rnaExtract=longNonPolyA; localization=cytosol; subId=9; dataVersion=ENCODE Nov 2008 Freeze; grant=Gingeras; lab=Riken; labVersion=Nexalign 1.3.3; view=Alignments; type=bed; tableName=wgEncodeRikenCageAlignmentsK562CytosolLongnonpolya
      2009-09-09wgEncodeRikenCageMinusClustersK562CytosolLongnonpolya.bedGraph4.gz  19M  2008-12-09  dataType=Cage; cell=K562; rnaExtract=longNonPolyA; localization=cytosol; subId=9; dataVersion=ENCODE Nov 2008 Freeze; grant=Gingeras; lab=Riken; labVersion=Nexalign 1.3.3; view=MinusClusters; type=bedGraph; tableName=wgEncodeRikenCageMinusClustersK562CytosolLongnonpolya
      2009-09-09wgEncodeRikenCagePlusClustersK562CytosolLongnonpolya.bedGraph4.gz  19M  2008-12-09  dataType=Cage; cell=K562; rnaExtract=longNonPolyA; localization=cytosol; subId=9; dataVersion=ENCODE Nov 2008 Freeze; grant=Gingeras; lab=Riken; labVersion=Nexalign 1.3.3; view=PlusClusters; type=bedGraph; tableName=wgEncodeRikenCagePlusClustersK562CytosolLongnonpolya
      2009-09-09wgEncodeRikenCageRawDataK562CytosolLongnonpolya.csfasta.gz  319M  2008-12-09  dataType=Cage; cell=K562; rnaExtract=longNonPolyA; localization=cytosol; subId=9; dataVersion=ENCODE Nov 2008 Freeze; grant=Gingeras; lab=Riken; view=RawData; type=csfasta
      2009-09-09wgEncodeRikenCageRawData2K562CytosolLongnonpolya.csqual.gz  685M  2008-12-09  dataType=Cage; cell=K562; rnaExtract=longNonPolyA; localization=cytosol; subId=9; dataVersion=ENCODE Nov 2008 Freeze; grant=Gingeras; lab=Riken; view=RawData2; type=csqual
      2009-09-09wgEncodeRikenCageAlignmentsK562NucleusLongnonpolya.tagAlign.gz  232M  2008-12-09  dataType=Cage; cell=K562; rnaExtract=longNonPolyA; localization=nucleus; subId=9; dataVersion=ENCODE Nov 2008 Freeze; grant=Gingeras; lab=Riken; labVersion=Nexalign 1.3.3; view=Alignments; type=bed; tableName=wgEncodeRikenCageAlignmentsK562NucleusLongnonpolya
      2009-09-09wgEncodeRikenCageMinusClustersK562NucleusLongnonpolya.bedGraph4.gz  35M  2008-12-09  dataType=Cage; cell=K562; rnaExtract=longNonPolyA; localization=nucleus; subId=9; dataVersion=ENCODE Nov 2008 Freeze; grant=Gingeras; lab=Riken; labVersion=Nexalign 1.3.3; view=MinusClusters; type=bedGraph; tableName=wgEncodeRikenCageMinusClustersK562NucleusLongnonpolya
      2009-09-09wgEncodeRikenCagePlusClustersK562NucleusLongnonpolya.bedGraph4.gz  36M  2008-12-09  dataType=Cage; cell=K562; rnaExtract=longNonPolyA; localization=nucleus; subId=9; dataVersion=ENCODE Nov 2008 Freeze; grant=Gingeras; lab=Riken; labVersion=Nexalign 1.3.3; view=PlusClusters; type=bedGraph; tableName=wgEncodeRikenCagePlusClustersK562NucleusLongnonpolya
      2009-09-09wgEncodeRikenCageRawDataK562NucleusLongnonpolya.csfasta.gz  395M  2008-12-09  dataType=Cage; cell=K562; rnaExtract=longNonPolyA; localization=nucleus; subId=9; dataVersion=ENCODE Nov 2008 Freeze; grant=Gingeras; lab=Riken; view=RawData; type=csfasta
      2009-09-09wgEncodeRikenCageRawData2K562NucleusLongnonpolya.csqual.gz  845M  2008-12-09  dataType=Cage; cell=K562; rnaExtract=longNonPolyA; localization=nucleus; subId=9; dataVersion=ENCODE Nov 2008 Freeze; grant=Gingeras; lab=Riken; view=RawData2; type=csqual
      2009-11-19wgEncodeRikenCageAlignmentsK562PolysomeLongnonpolya.tagAlign.gz  78M  2009-02-19  dataType=Cage; cell=K562; rnaExtract=longNonPolyA; localization=polysome; subId=212; dataVersion=ENCODE Feb 2009 Freeze; grant=Gingeras; lab=Riken; view=Alignments; type=bed; tableName=wgEncodeRikenCageAlignmentsK562PolysomeLongnonpolya
      2009-11-19wgEncodeRikenCageMinusClustersK562PolysomeLongnonpolya.bedGraph4.gz  12M  2009-02-19  dataType=Cage; cell=K562; rnaExtract=longNonPolyA; localization=polysome; subId=212; dataVersion=ENCODE Feb 2009 Freeze; grant=Gingeras; lab=Riken; view=MinusClusters; type=bedGraph; tableName=wgEncodeRikenCageMinusClustersK562PolysomeLongnonpolya
      2009-11-19wgEncodeRikenCagePlusClustersK562PolysomeLongnonpolya.bedGraph4.gz  12M  2009-02-19  dataType=Cage; cell=K562; rnaExtract=longNonPolyA; localization=polysome; subId=212; dataVersion=ENCODE Feb 2009 Freeze; grant=Gingeras; lab=Riken; view=PlusClusters; type=bedGraph; tableName=wgEncodeRikenCagePlusClustersK562PolysomeLongnonpolya
      2009-11-19wgEncodeRikenCageRawDataK562PolysomeLongnonpolya.fastq.gz  132M  2009-02-19  dataType=Cage; cell=K562; rnaExtract=longNonPolyA; localization=polysome; subId=212; dataVersion=ENCODE Feb 2009 Freeze; grant=Gingeras; lab=Riken; view=RawData; type=fastq
      2009-11-04wgEncodeRikenCageAlignmentsK562CytosolLongpolya.tagAlign.gz  38M  2009-02-04  dataType=Cage; cell=K562; rnaExtract=longPolyA; localization=cytosol; subId=202; dataVersion=ENCODE Feb 2009 Freeze; grant=Gingeras; lab=Riken; view=Alignments; type=bed; tableName=wgEncodeRikenCageAlignmentsK562CytosolLongpolya
      2009-11-04wgEncodeRikenCageMinusClustersK562CytosolLongpolya.bedGraph4.gz  3.1M  2009-02-04  dataType=Cage; cell=K562; rnaExtract=longPolyA; localization=cytosol; subId=202; dataVersion=ENCODE Feb 2009 Freeze; grant=Gingeras; lab=Riken; view=MinusClusters; type=bedGraph; tableName=wgEncodeRikenCageMinusClustersK562CytosolLongpolya
      2009-11-04wgEncodeRikenCagePlusClustersK562CytosolLongpolya.bedGraph4.gz  3.1M  2009-02-04  dataType=Cage; cell=K562; rnaExtract=longPolyA; localization=cytosol; subId=202; dataVersion=ENCODE Feb 2009 Freeze; grant=Gingeras; lab=Riken; view=PlusClusters; type=bedGraph; tableName=wgEncodeRikenCagePlusClustersK562CytosolLongpolya
      2009-11-04wgEncodeRikenCageRawDataK562CytosolLongpolya.fastq.gz  199M  2009-02-04  dataType=Cage; cell=K562; rnaExtract=longPolyA; localization=cytosol; subId=202; dataVersion=ENCODE Feb 2009 Freeze; grant=Gingeras; lab=Riken; view=RawData; type=fastq
      2009-11-04wgEncodeRikenCageAlignmentsK562NucleusLongpolya.tagAlign.gz  106M  2009-02-04  dataType=Cage; cell=K562; rnaExtract=longPolyA; localization=nucleus; subId=202; dataVersion=ENCODE Feb 2009 Freeze; grant=Gingeras; lab=Riken; view=Alignments; type=bed; tableName=wgEncodeRikenCageAlignmentsK562NucleusLongpolya
      2009-11-04wgEncodeRikenCageMinusClustersK562NucleusLongpolya.bedGraph4.gz  13M  2009-02-04  dataType=Cage; cell=K562; rnaExtract=longPolyA; localization=nucleus; subId=202; dataVersion=ENCODE Feb 2009 Freeze; grant=Gingeras; lab=Riken; view=MinusClusters; type=bedGraph; tableName=wgEncodeRikenCageMinusClustersK562NucleusLongpolya
      2009-11-04wgEncodeRikenCagePlusClustersK562NucleusLongpolya.bedGraph4.gz  13M  2009-02-04  dataType=Cage; cell=K562; rnaExtract=longPolyA; localization=nucleus; subId=202; dataVersion=ENCODE Feb 2009 Freeze; grant=Gingeras; lab=Riken; view=PlusClusters; type=bedGraph; tableName=wgEncodeRikenCagePlusClustersK562NucleusLongpolya
      2009-11-04wgEncodeRikenCageRawDataK562NucleusLongpolya.fastq.gz  184M  2009-02-04  dataType=Cage; cell=K562; rnaExtract=longPolyA; localization=nucleus; subId=202; dataVersion=ENCODE Feb 2009 Freeze; grant=Gingeras; lab=Riken; view=RawData; type=fastq
      2009-11-19wgEncodeRikenCageAlignmentsK562ChromatinTotal.tagAlign.gz  166M  2009-02-19  dataType=Cage; cell=K562; rnaExtract=total; localization=chromatin; subId=212; dataVersion=ENCODE Feb 2009 Freeze; grant=Gingeras; lab=Riken; view=Alignments; type=bed; tableName=wgEncodeRikenCageAlignmentsK562ChromatinTotal
      2009-11-19wgEncodeRikenCageMinusClustersK562ChromatinTotal.bedGraph4.gz  25M  2009-02-19  dataType=Cage; cell=K562; rnaExtract=total; localization=chromatin; subId=212; dataVersion=ENCODE Feb 2009 Freeze; grant=Gingeras; lab=Riken; view=MinusClusters; type=bedGraph; tableName=wgEncodeRikenCageMinusClustersK562ChromatinTotal
      2009-11-19wgEncodeRikenCagePlusClustersK562ChromatinTotal.bedGraph4.gz  26M  2009-02-19  dataType=Cage; cell=K562; rnaExtract=total; localization=chromatin; subId=212; dataVersion=ENCODE Feb 2009 Freeze; grant=Gingeras; lab=Riken; view=PlusClusters; type=bedGraph; tableName=wgEncodeRikenCagePlusClustersK562ChromatinTotal
      2009-11-19wgEncodeRikenCageRawDataK562ChromatinTotal.fastq.gz  114M  2009-02-19  dataType=Cage; cell=K562; rnaExtract=total; localization=chromatin; subId=212; dataVersion=ENCODE Feb 2009 Freeze; grant=Gingeras; lab=Riken; view=RawData; type=fastq
      2009-11-19wgEncodeRikenCageAlignmentsK562NucleolusTotal.tagAlign.gz  127M  2009-02-19  dataType=Cage; cell=K562; rnaExtract=total; localization=nucleolus; subId=212; dataVersion=ENCODE Feb 2009 Freeze; grant=Gingeras; lab=Riken; view=Alignments; type=bed; tableName=wgEncodeRikenCageAlignmentsK562NucleolusTotal
      2009-11-19wgEncodeRikenCageMinusClustersK562NucleolusTotal.bedGraph4.gz  20M  2009-02-19  dataType=Cage; cell=K562; rnaExtract=total; localization=nucleolus; subId=212; dataVersion=ENCODE Feb 2009 Freeze; grant=Gingeras; lab=Riken; view=MinusClusters; type=bedGraph; tableName=wgEncodeRikenCageMinusClustersK562NucleolusTotal
      2009-11-19wgEncodeRikenCagePlusClustersK562NucleolusTotal.bedGraph4.gz  21M  2009-02-19  dataType=Cage; cell=K562; rnaExtract=total; localization=nucleolus; subId=212; dataVersion=ENCODE Feb 2009 Freeze; grant=Gingeras; lab=Riken; view=PlusClusters; type=bedGraph; tableName=wgEncodeRikenCagePlusClustersK562NucleolusTotal
      2009-11-19wgEncodeRikenCageRawDataK562NucleolusTotal.fastq.gz  98M  2009-02-19  dataType=Cage; cell=K562; rnaExtract=total; localization=nucleolus; subId=212; dataVersion=ENCODE Feb 2009 Freeze; grant=Gingeras; lab=Riken; view=RawData; type=fastq
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