[DIR] Parent Directory

This directory contains data generated by the Snyder/Yale lab as part of the ENCODE project. Further information is available in the ENCODE Poly-A Tail Expression by RNA-seq from Yale/UC-Davis/Harvard track description. This set of tracks is support for the Yale TFBS set. Downloads of those files can be found here.

Data is RESTRICTED FROM USE in publication until the restriction date noted for the given data file.

There are two files within this directory that contain information about the downloads:
  • files.txt which is a tab-separated file with the name and metadata for each download.
  • md5sum.txt which is a list of the md5sum output for each download.
    • RESTRICTED
    until    		  FileSizeSubmitted  Details
      2010-06-24wgEncodeYaleRnaSeqPolyaSignalGm12878.bedGraph4.gz  142M  2009-09-24  dataType=RnaSeqPolya; cell=GM12878; subId=539; dataVersion=ENCODE Sep 2009 Freeze; grant=Snyder; lab=Yale; labVersion=PeakSeq1.0; view=Signal; type=bedGraph; tableName=wgEncodeYaleRnaSeqPolyaSignalGm12878
      2010-06-24wgEncodeYaleRnaSeqPolyaAlignmentsGm12878.tagAlign.gz  614M  2009-09-24  dataType=RnaSeqPolya; cell=GM12878; subId=539; dataVersion=ENCODE Sep 2009 Freeze; grant=Snyder; lab=Yale; view=Alignments; type=tagAlign
      2010-06-24wgEncodeYaleRnaSeqPolyaRawDataGm12878.fastq.gz  2.7G  2009-09-24  dataType=RnaSeqPolya; cell=GM12878; subId=539; dataVersion=ENCODE Sep 2009 Freeze; grant=Snyder; lab=Yale; view=RawData; type=fastq
      2010-06-24wgEncodeYaleRnaSeqPolyaSignalK562Ifna30m.bedGraph4.gz  149M  2009-09-24  dataType=RnaSeqPolya; cell=K562; treatment=IFNa30m; subId=540; dataVersion=ENCODE Sep 2009 Freeze; grant=Snyder; lab=Yale; labVersion=PeakSeq1.0; view=Signal; type=bedGraph; tableName=wgEncodeYaleRnaSeqPolyaSignalK562Ifna30m
      2010-06-24wgEncodeYaleRnaSeqPolyaAlignmentsK562Ifna30m.tagAlign.gz  639M  2009-09-24  dataType=RnaSeqPolya; cell=K562; treatment=IFNa30m; subId=540; dataVersion=ENCODE Sep 2009 Freeze; grant=Snyder; lab=Yale; view=Alignments; type=tagAlign
      2010-06-24wgEncodeYaleRnaSeqPolyaRawDataK562Ifna30m.fastq.gz  3.0G  2009-09-24  dataType=RnaSeqPolya; cell=K562; treatment=IFNa30m; subId=540; dataVersion=ENCODE Sep 2009 Freeze; grant=Snyder; lab=Yale; view=RawData; type=fastq
      2010-06-24wgEncodeYaleRnaSeqPolyaSignalK562Ifna6h.bedGraph4.gz  128M  2009-09-24  dataType=RnaSeqPolya; cell=K562; treatment=IFNa6h; subId=541; dataVersion=ENCODE Sep 2009 Freeze; grant=Snyder; lab=Yale; labVersion=PeakSeq1.0; view=Signal; type=bedGraph; tableName=wgEncodeYaleRnaSeqPolyaSignalK562Ifna6h
      2010-06-24wgEncodeYaleRnaSeqPolyaAlignmentsK562Ifna6h.tagAlign.gz  556M  2009-09-24  dataType=RnaSeqPolya; cell=K562; treatment=IFNa6h; subId=541; dataVersion=ENCODE Sep 2009 Freeze; grant=Snyder; lab=Yale; view=Alignments; type=tagAlign
      2010-06-24wgEncodeYaleRnaSeqPolyaRawDataK562Ifna6h.fastq.gz  2.6G  2009-09-24  dataType=RnaSeqPolya; cell=K562; treatment=IFNa6h; subId=541; dataVersion=ENCODE Sep 2009 Freeze; grant=Snyder; lab=Yale; view=RawData; type=fastq
      2010-06-24wgEncodeYaleRnaSeqPolyaSignalK562Ifng30m.bedGraph4.gz  145M  2009-09-24  dataType=RnaSeqPolya; cell=K562; treatment=IFNg30m; subId=542; dataVersion=ENCODE Sep 2009 Freeze; grant=Snyder; lab=Yale; labVersion=PeakSeq1.0; view=Signal; type=bedGraph; tableName=wgEncodeYaleRnaSeqPolyaSignalK562Ifng30m
      2010-06-24wgEncodeYaleRnaSeqPolyaAlignmentsK562Ifng30m.tagAlign.gz  691M  2009-09-24  dataType=RnaSeqPolya; cell=K562; treatment=IFNg30m; subId=542; dataVersion=ENCODE Sep 2009 Freeze; grant=Snyder; lab=Yale; view=Alignments; type=tagAlign
      2010-06-24wgEncodeYaleRnaSeqPolyaRawDataK562Ifng30m.fastq.gz  2.8G  2009-09-24  dataType=RnaSeqPolya; cell=K562; treatment=IFNg30m; subId=542; dataVersion=ENCODE Sep 2009 Freeze; grant=Snyder; lab=Yale; view=RawData; type=fastq
      2010-06-24wgEncodeYaleRnaSeqPolyaSignalK562Ifng6h.bedGraph4.gz  146M  2009-09-24  dataType=RnaSeqPolya; cell=K562; treatment=IFNg6h; subId=543; dataVersion=ENCODE Sep 2009 Freeze; grant=Snyder; lab=Yale; labVersion=PeakSeq1.0; view=Signal; type=bedGraph; tableName=wgEncodeYaleRnaSeqPolyaSignalK562Ifng6h
      2010-06-24wgEncodeYaleRnaSeqPolyaAlignmentsK562Ifng6h.tagAlign.gz  655M  2009-09-24  dataType=RnaSeqPolya; cell=K562; treatment=IFNg6h; subId=543; dataVersion=ENCODE Sep 2009 Freeze; grant=Snyder; lab=Yale; view=Alignments; type=tagAlign
      2010-06-24wgEncodeYaleRnaSeqPolyaRawDataK562Ifng6h.fastq.gz  2.7G  2009-09-24  dataType=RnaSeqPolya; cell=K562; treatment=IFNg6h; subId=543; dataVersion=ENCODE Sep 2009 Freeze; grant=Snyder; lab=Yale; view=RawData; type=fastq
      2009-12-17wgEncodeYaleRnaSeqPolyaSignalK562.bedGraph4.gz  32M  2009-03-17  dataType=RnaSeqPolya; cell=K562; subId=276; dataVersion=ENCODE Feb 2009 Freeze; grant=Snyder; lab=Yale; labVersion=PeakSeq1.0; view=Signal; type=bedGraph; tableName=wgEncodeYaleRnaSeqPolyaSignalK562
      2009-12-17wgEncodeYaleRnaSeqPolyaRawDataK562.fastq.gz  1.2G  2009-03-17  dataType=RnaSeqPolya; cell=K562; subId=276; dataVersion=ENCODE Feb 2009 Freeze; grant=Snyder; lab=Yale; view=RawData; type=fastq
      2009-12-17wgEncodeYaleRnaSeqPolyaAlignmentsK562.tagAlign.gz  322M  2009-03-17  dataType=RnaSeqPolya; cell=K562; subId=788; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-24; grant=Snyder; lab=Yale; labVersion=corrected locations; fragLength=200; view=Alignments; type=tagAlign
    18 files