This directory contains reciprocal-best netted chains for hg38-mm39.
- hg38.mm39.rbest.net.gz: hg38-referenced recip.best net to mm39.
- hg38.mm39.rbest.chain.gz: chains extracted from the recip.best
net. These can be passed to the liftOver program to translate coords
from hg38 to mm39 through the recip.best net.
- mm39.hg38.rbest.net.gz: mm39-referenced recip.best net.
- mm39.hg38.rbest.chain.gz: recip.best "liftOver" chains.
- axtRBestNet/hg38.mm39.rbest.axt.gz reciprocal best alignments in
AXT format
See also, description of AXT format::
http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
http://genome.ucsc.edu/goldenPath/help/net.html
Name Last modified Size Description
Parent Directory -
axtRBestNet/ 2021-03-15 14:58 -
hg38.mm39.rbest.chain.gz 2020-08-18 09:05 65M
hg38.mm39.rbest.net.gz 2020-08-18 09:07 140M
md5sum.txt 2020-08-18 09:07 232
mm39.hg38.rbest.chain.gz 2020-08-18 09:05 65M
mm39.hg38.rbest.net.gz 2020-08-18 09:04 91M