This directory contains reciprocal-best netted chains for hg38-orcOrc1.

 - hg38.orcOrc1.rbest.net.gz: hg38-referenced recip.best net to orcOrc1.
 - hg38.orcOrc1.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from hg38 to orcOrc1 through the recip.best net.

 - orcOrc1.hg38.rbest.net.gz: orcOrc1-referenced recip.best net.
 - orcOrc1.hg38.rbest.chain.gz: recip.best "liftOver" chains.

 - axtRBestNet/hg38.orcOrc1.rbest.axt.gz reciprocal best alignments in
   AXT format

See also, description of AXT format::
    http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
    http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
    http://genome.ucsc.edu/goldenPath/help/net.html

      Name                        Last modified      Size  Description
      Parent Directory                                 -   
      axtRBestNet/                2016-06-05 06:25    -   
      md5sum.txt                  2016-06-04 21:47  244   
      orcOrc1.hg38.rbest.chain.gz 2016-06-04 21:42   75M  
      hg38.orcOrc1.rbest.chain.gz 2016-06-04 21:44   75M  
      orcOrc1.hg38.rbest.net.gz   2016-06-04 21:40  127M  
      hg38.orcOrc1.rbest.net.gz   2016-06-04 21:47  143M