This directory contains reciprocal-best netted chains for hs1-hg38.
- hs1.hg38.rbest.net.gz: hs1-referenced recip.best net to hg38.
- hs1.hg38.rbest.chain.gz: chains extracted from the recip.best
net. These can be passed to the liftOver program to translate coords
from hs1 to hg38 through the recip.best net.
- hg38.hs1.rbest.net.gz: hg38-referenced recip.best net.
- hg38.hs1.rbest.chain.gz: recip.best "liftOver" chains.
- axtRBestNet/*.hs1.hg38.net.axt.gz reciprocal best alignments in
AXT format
See also, description of AXT format::
http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
http://genome.ucsc.edu/goldenPath/help/net.html
Name Last modified Size Description
Parent Directory -
axtRBestNet/ 2022-10-18 16:56 -
hg38.hs1.rbest.chain.gz 2022-09-27 16:16 2.2M
hg38.hs1.rbest.net.gz 2022-09-27 16:16 3.3M
hs1.hg38.rbest.chain.gz 2022-09-27 16:16 2.2M
hs1.hg38.rbest.net.gz 2022-09-27 16:16 3.5M
md5sum.txt 2022-09-27 16:16 228