This directory contains reciprocal-best netted chains for mm39-hg38.
- mm39.hg38.rbest.net.gz: mm39-referenced recip.best net to hg38.
- mm39.hg38.rbest.chain.gz: chains extracted from the recip.best
net. These can be passed to the liftOver program to translate coords
from mm39 to hg38 through the recip.best net.
- hg38.mm39.rbest.net.gz: hg38-referenced recip.best net.
- hg38.mm39.rbest.chain.gz: recip.best "liftOver" chains.
- axtRBestNet/*.mm39.hg38.net.axt.gz reciprocal best alignments in
AXT format
See also, description of AXT format::
http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
http://genome.ucsc.edu/goldenPath/help/net.html
Name Last modified Size Description
Parent Directory -
axtRBestNet/ 2020-10-07 15:50 -
hg38.mm39.rbest.chain.gz 2020-08-18 10:56 65M
hg38.mm39.rbest.net.gz 2020-08-18 10:55 141M
md5sum.txt 2020-08-18 10:58 232
mm39.hg38.rbest.chain.gz 2020-08-18 10:57 65M
mm39.hg38.rbest.net.gz 2020-08-18 10:58 92M