This directory contains reciprocal-best netted chains for mm39-panPan3.
- mm39.panPan3.rbest.net.gz: mm39-referenced recip.best net to panPan3.
- mm39.panPan3.rbest.chain.gz: chains extracted from the recip.best
net. These can be passed to the liftOver program to translate coords
from mm39 to panPan3 through the recip.best net.
- panPan3.mm39.rbest.net.gz: panPan3-referenced recip.best net.
- panPan3.mm39.rbest.chain.gz: recip.best "liftOver" chains.
- axtRBestNet/*.mm39.panPan3.net.axt.gz reciprocal best alignments in
AXT format
See also, description of AXT format::
http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
http://genome.ucsc.edu/goldenPath/help/net.html
Name Last modified Size Description
Parent Directory -
axtRBestNet/ 2021-03-15 15:40 -
md5sum.txt 2020-11-24 05:58 244
mm39.panPan3.rbest.chain.gz 2020-11-24 05:56 65M
panPan3.mm39.rbest.chain.gz 2020-11-24 05:55 65M
mm39.panPan3.rbest.net.gz 2020-11-24 05:58 92M
panPan3.mm39.rbest.net.gz 2020-11-24 05:54 141M