This directory contains compressed multiple alignments of the
following assemblies to the mouse genome (mm6, Mar. 2005):
- rat (rn3, Jun. 2003)
- human (hg17, May 2004)
- dog (canFam2, May. 2005)
- cow (bosTau1, Sep. 2004)
- opossum (monDom1, Oct. 2004)
- chicken (galGal2, Feb. 2004)
- frog (xenTro1, Oct. 2004)
- zebrafish (danRer3, May. 2005)
- Tetraodon (tetNig1, Feb. 2004)
Files included in this directory:
- chr*.maf.gz files: each contain all the alignments to that
particular mouse chromosome.
For a description of multiple alignment format (MAF), see
http://genome.ucsc.edu/goldenPath/help/maf.html.
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If you plan to download a large file or multiple files from this
directory, we recommend that you use ftp rather than downloading the
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu,
then go to the directory goldenPath/mm6/multiz10way. To download
multiple files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the files in this directory are freely usable for any
purpose. For data use restrictions regarding the individual
genome assemblies, see http://genome.ucsc.edu/goldenPath/credits.html.
Name Last modified Size Description
Parent Directory -
chr1.maf.gz 2005-12-05 19:50 196M
chr1_random.maf.gz 2005-12-05 16:34 1.1M
chr2.maf.gz 2005-12-05 20:05 202M
chr3.maf.gz 2005-12-05 18:49 157M
chr3_random.maf.gz 2005-12-05 16:35 2.9M
chr4.maf.gz 2005-12-05 18:52 158M
chr5.maf.gz 2005-12-05 18:36 149M
chr5_random.maf.gz 2005-12-05 16:34 1.7M
chr6.maf.gz 2005-12-05 18:37 151M
chr6_random.maf.gz 2005-12-05 16:34 1.1M
chr7.maf.gz 2005-12-05 18:17 134M
chr7_random.maf.gz 2005-12-05 16:34 2.6M
chr8.maf.gz 2005-12-05 18:10 129M
chr8_random.maf.gz 2005-12-05 16:34 1.6M
chr9.maf.gz 2005-12-05 18:18 133M
chr9_random.maf.gz 2005-12-05 16:34 358K
chr10.maf.gz 2005-12-05 18:17 133M
chr10_random.maf.gz 2005-12-05 16:34 462K
chr11.maf.gz 2005-12-05 18:27 137M
chr12.maf.gz 2005-12-05 17:57 117M
chr12_random.maf.gz 2005-12-05 16:35 2.7M
chr13.maf.gz 2005-12-05 17:50 113M
chr13_random.maf.gz 2005-12-05 16:35 3.0M
chr14.maf.gz 2005-12-05 17:59 120M
chr14_random.maf.gz 2005-12-05 16:34 1.4M
chr15.maf.gz 2005-12-05 17:43 105M
chr15_random.maf.gz 2005-12-05 16:34 778K
chr16.maf.gz 2005-12-05 17:37 98M
chr16_random.maf.gz 2005-12-05 16:34 1.4M
chr17.maf.gz 2005-12-05 17:29 90M
chr17_random.maf.gz 2005-12-05 16:34 1.2M
chr18.maf.gz 2005-12-05 17:33 93M
chr18_random.maf.gz 2005-12-05 16:34 744K
chr19.maf.gz 2005-12-05 17:14 67M
chr19_random.maf.gz 2005-12-05 16:34 631K
chrM.maf.gz 2005-12-05 16:33 61K
chrUn_random.maf.gz 2005-12-05 16:41 22M
chrX.maf.gz 2005-12-05 18:00 124M
chrY.maf.gz 2005-12-05 16:34 950K
chrY_random.maf.gz 2005-12-05 16:36 12M