This directory contains reciprocal-best netted chains for speTri2-mm39.

 - speTri2.mm39.rbest.net.gz: speTri2-referenced recip.best net to mm39.
 - speTri2.mm39.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from speTri2 to mm39 through the recip.best net.

 - mm39.speTri2.rbest.net.gz: mm39-referenced recip.best net.
 - mm39.speTri2.rbest.chain.gz: recip.best "liftOver" chains.

 - axtRBestNet/speTri2.mm39.rbest.axt.gz reciprocal best alignments in
   AXT format

See also, description of AXT format::
    http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
    http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
    http://genome.ucsc.edu/goldenPath/help/net.html

      Name                        Last modified      Size  Description
      Parent Directory                                 -   
      axtRBestNet/                2021-03-15 16:12    -   
      md5sum.txt                  2020-11-26 01:53  244   
      speTri2.mm39.rbest.net.gz   2020-11-26 01:53  128M  
      speTri2.mm39.rbest.chain.gz 2020-11-26 01:51   65M  
      mm39.speTri2.rbest.chain.gz 2020-11-26 01:50   64M  
      mm39.speTri2.rbest.net.gz   2020-11-26 01:49  106M