# AGP dumped from Genomic-Collection: Assembly GRCh38.p3 PATCHES # (Assembly accession = GCA_000005045.16, asm_id = 497223) # Scaffolds-from-components ##agp-version 2.0 # Format: object object_beg object_end part_number component_type component_id component_beg component_end orientation # Gaps: object object_beg object_end part_number N gap_length gap_type linkage evidence chr1_KQ031383v1_fix 1 135897 1 F AC245034.2 1 135897 - chr1_KQ031383v1_fix 135898 158724 2 F AC256219.1 98659 121485 - chr1_KQ031383v1_fix 158725 351331 3 F AC245056.3 1 192607 - chr1_KQ031383v1_fix 351332 467143 4 F AC244216.2 1 115812 - chr1_KN538361v1_fix 1 129966 1 F AL590644.14 2001 131966 + chr1_KN538361v1_fix 129967 172036 2 F AL138798.11 1 42070 + chr1_KN538361v1_fix 172037 237108 3 F AC004824.3 70435 135506 - chr1_KN538361v1_fix 237109 237661 4 O KF573689.1 1 553 - chr1_KN538361v1_fix 237662 305542 5 F AC004824.3 2000 69880 - chr1_KN196473v1_fix 1 128277 1 F AL627313.16 1 128277 - chr1_KN196473v1_fix 128278 166200 2 F AL627082.9 2001 39923 + chr1_KN196472v1_fix 1 109220 1 F AC093151.2 2001 111220 + chr1_KN196472v1_fix 109221 151407 2 F FO681542.2 1 42187 + chr1_KN196472v1_fix 151408 175855 3 F AC093151.2 153191 177638 + chr1_KN196472v1_fix 175856 175911 4 O KF570255.1 1 56 + chr1_KN196472v1_fix 175912 186494 5 F AC093151.2 177694 188276 + chr1_KN196474v1_fix 1 51402 1 F AL158844.14 2001 53402 + chr1_KN196474v1_fix 51403 122022 2 F AL390242.18 101 70720 + chr1_KN538360v1_fix 1 40952 1 F AL035414.30 1999 42950 + chr1_KN538360v1_fix 40953 41096 2 O KF455136.1 1 144 + chr1_KN538360v1_fix 41097 106135 3 F AL035414.30 43095 108133 + chr1_KN538360v1_fix 106136 106496 4 O KF510719.1 1 361 - chr1_KN538360v1_fix 106497 129242 5 F AL035414.30 108494 131239 + chr1_KN538360v1_fix 129243 219984 6 F AL034351.1 46837 137578 - chr1_KN538360v1_fix 219985 220276 7 O KF455134.1 1 292 + chr1_KN538360v1_fix 220277 266820 8 F AL034351.1 1 46544 - chr1_KN538360v1_fix 266821 380923 9 F AL590653.11 2001 116103 + chr1_KN538360v1_fix 380924 382917 10 F BX255872.1 2001 3994 + chr1_KN538360v1_fix 382918 422076 11 F AL691441.8 2001 41159 + chr1_KN538360v1_fix 422077 460100 12 F AC217414.3 1 38024 - chr2_KQ031384v1_fix 1 73811 1 F AC243970.3 1 73811 - chr2_KQ031384v1_fix 73812 304125 2 F AC245015.2 25116 255429 + chr2_KQ031384v1_fix 304126 439505 3 F AC244255.3 63620 198999 + chr2_KQ031384v1_fix 439506 481245 4 F AC255551.1 172097 213836 + chr2_KN538363v1_fix 1 50417 1 F AC108511.4 2001 52417 + chr2_KN538363v1_fix 50418 52303 2 F AC141929.2 1 1886 + chr2_KN538363v1_fix 52304 52691 3 O KF456772.1 1 388 + chr2_KN538363v1_fix 52692 84369 4 F AC141929.2 2275 33952 + chr2_KN538363v1_fix 84370 88053 5 W ABBA01001995.1 1 3684 - chr2_KN538363v1_fix 88054 90433 6 W AUXG01000014.1 28693 31072 + chr2_KN538363v1_fix 90434 122715 7 F AC233715.2 1 32282 - chr2_KN538363v1_fix 122716 151052 8 F AC114729.4 16558 44894 + chr2_KN538363v1_fix 151053 365499 9 F AC013726.7 201 214647 - chr2_KN538362v1_fix 1 165535 1 F AC093802.3 1 165535 + chr2_KN538362v1_fix 165536 169159 2 W ABBA01033508.1 1 3624 - chr2_KN538362v1_fix 169160 172818 3 W AUXG01000020.1 318 3976 - chr2_KN538362v1_fix 172819 208149 4 F AC233275.2 1 35331 - chr3_KN196475v1_fix 1 185690 1 F AC099669.2 31346 217035 + chr3_KN196475v1_fix 185691 246780 2 F AC092046.2 1 61090 - chr3_KN196475v1_fix 246781 248892 3 F AC124045.2 62855 64966 + chr3_KN196475v1_fix 248893 451168 4 F AC098649.2 1868 204143 + chr3_KQ031385v1_fix 1 131915 1 F AC145425.5 3977 135891 + chr3_KQ031385v1_fix 131916 159794 2 F AC170801.2 11410 39288 + chr3_KQ031385v1_fix 159795 169474 3 W AUXG01000021.1 52083 61762 - chr3_KQ031385v1_fix 169475 206495 4 F AC235952.3 1 37021 + chr3_KQ031385v1_fix 206496 234537 5 F AC170165.1 1 28042 - chr3_KQ031385v1_fix 234538 373699 6 F AC092034.2 14923 154084 + chr3_KN538364v1_fix 1 28441 1 F AC104330.2 147778 176218 - chr3_KN538364v1_fix 28442 233605 2 F AC255560.1 1 205164 + chr3_KN538364v1_fix 233606 415308 3 F AC097369.2 1 181703 - chr3_KQ031386v1_fix 1 20902 1 W ABBA01004653.1 1 20902 + chr3_KQ031386v1_fix 20903 34774 2 W AUXG01000382.1 5260 19131 + chr3_KQ031386v1_fix 34775 165718 3 W ABBA01004655.1 1 130944 + chr3_KN196476v1_fix 1 2183 1 W ABBA01000927.1 1 2183 + chr3_KN196476v1_fix 2184 8699 2 N 6516 scaffold yes paired-ends chr3_KN196476v1_fix 8700 10168 3 W ABBA01000928.1 1 1469 + chr3_KN196476v1_fix 10169 12458 4 N 2290 scaffold yes paired-ends chr3_KN196476v1_fix 12459 17659 5 W ABBA01000929.1 1 5201 + chr3_KN196476v1_fix 17660 29272 6 N 11613 scaffold yes paired-ends chr3_KN196476v1_fix 29273 34453 7 W ABBA01000930.1 1 5181 + chr3_KN196476v1_fix 34454 35012 8 N 559 scaffold yes paired-ends chr3_KN196476v1_fix 35013 43347 9 W ABBA01000931.1 1 8335 + chr3_KN196476v1_fix 43348 43496 10 N 149 scaffold yes paired-ends chr3_KN196476v1_fix 43497 70015 11 W ABBA01000932.1 1 26519 + chr3_KN196476v1_fix 70016 233155 12 F AL354926.17 1 163140 - chr3_KN196476v1_fix 233156 305979 13 W ABBA01000935.1 41678 114501 + chr5_KN196477v1_alt 1 97530 1 F AC140172.3 68572 166101 + chr5_KN196477v1_alt 97531 139087 2 F AC208067.2 1 41557 + chr6_KQ031387v1_fix 1 170095 1 F AL356131.12 1 170095 + chr6_KQ031387v1_fix 170096 252139 2 F LO000005.2 2001 84044 + chr6_KQ031387v1_fix 252140 320750 3 F FP325349.3 2001 70611 + chr6_KN196478v1_fix 1 177963 1 F AL512455.8 1 177963 + chr6_KN196478v1_fix 177964 268330 2 F AL512368.9 57253 147619 + chr7_KQ031388v1_fix 1 151198 1 F AC024730.7 1 151198 - chr7_KQ031388v1_fix 151199 155919 2 W AUXG01000062.1 4428 9148 - chr7_KQ031388v1_fix 155920 179932 3 F AC142230.3 1 24013 + chr9_KN196479v1_fix 1 27097 1 F AL732364.10 2001 29097 + chr9_KN196479v1_fix 27098 176579 2 F AL772161.10 1 149482 + chr9_KN196479v1_fix 176580 330164 3 F AL593848.15 2001 155585 + chr10_KN538367v1_fix 1 140616 1 F AC127389.2 1 140616 + chr10_KN538367v1_fix 140617 311649 2 W ABBA01020717.1 1 171033 - chr10_KN538367v1_fix 311650 312026 3 W AUXG01000305.1 56400 56776 + chr10_KN538367v1_fix 312027 320844 4 W ABBA01020716.1 1 8818 + chr10_KN538367v1_fix 320845 322320 5 W AUXG01000305.1 65590 67065 + chr10_KN538367v1_fix 322321 336452 6 W ABBA01020715.1 1 14132 + chr10_KN538367v1_fix 336453 336709 7 W AUXG01000305.1 81196 81452 + chr10_KN538367v1_fix 336710 359027 8 W ABBA01020714.1 1 22318 + chr10_KN538367v1_fix 359028 364512 9 W AUXG01000307.1 5328 10812 + chr10_KN538367v1_fix 364513 420164 10 W ABBA01020712.1 1 55652 - chr10_KN196480v1_fix 1 30521 1 F AL360225.18 1 30521 + chr10_KN196480v1_fix 30522 190268 2 F AC063962.11 1 159747 - chr10_KN196480v1_fix 190269 277797 3 F AC018511.5 71991 159519 + chr10_KN538366v1_fix 1 10453 1 F FP885909.2 2001 12453 + chr10_KN538366v1_fix 10454 15071 2 W AUXG01000081.1 35452 40069 + chr10_KN538366v1_fix 15072 67283 3 W ABBA01016844.1 3303 55514 + chr10_KN538366v1_fix 67284 85284 4 F FO681490.2 1 18001 + chr10_KN538365v1_fix 1 92 1 F FO082816.4 2001 2092 + chr10_KN538365v1_fix 93 5935 2 W AUXG01000085.1 29280 35122 + chr10_KN538365v1_fix 5936 14347 3 F BX294094.5 1 8412 + chr11_KN538368v1_alt 1 24602 1 F AC044810.7 1 24602 + chr11_KN538368v1_alt 24603 65374 2 F AC243812.1 1 40772 + chr11_KN538368v1_alt 65375 90140 3 F AC044810.7 55249 80014 + chr11_KN538368v1_alt 90141 90526 4 O KF459744.1 1 386 + chr11_KN538368v1_alt 90527 203552 5 F AC044810.7 80401 193426 + chr11_KN196481v1_fix 1 49077 1 F AP003392.2 69466 118542 + chr11_KN196481v1_fix 49078 49570 2 O FP885832.1 1 493 + chr11_KN196481v1_fix 49571 64389 3 F AP003392.2 119037 133855 + chr11_KN196481v1_fix 64390 64776 4 O KF510358.1 1 387 + chr11_KN196481v1_fix 64777 66474 5 F AP003392.2 134244 135941 + chr11_KN196481v1_fix 66475 66830 6 O KF510357.1 1 356 - chr11_KN196481v1_fix 66831 77724 7 F AP003392.2 136299 147192 + chr11_KN196481v1_fix 77725 78070 8 O KF511132.1 1 346 - chr11_KN196481v1_fix 78071 90598 9 F AP003392.2 147538 160065 + chr11_KN196481v1_fix 90599 91018 10 O KF511489.1 1 420 - chr11_KN196481v1_fix 91019 108875 11 F AP003392.2 160485 178341 + chr12_KN538369v1_fix 1 119504 1 F AC007537.3 209 119712 + chr12_KN538369v1_fix 119505 119894 2 O KF455603.1 1 390 + chr12_KN538369v1_fix 119895 190650 3 F AC007537.3 120103 190858 + chr12_KN538369v1_fix 190651 332646 4 F AC007621.34 2005 144000 + chr12_KN538369v1_fix 332647 362705 5 F AC255400.1 46211 76269 + chr12_KN538369v1_fix 362706 494024 6 F AC007619.23 8837 140155 - chr12_KN538369v1_fix 494025 494400 7 O KF455604.1 1 376 + chr12_KN538369v1_fix 494401 502860 8 F AC007619.23 1 8460 - chr12_KN538369v1_fix 502861 541038 9 F AC092824.13 1 38178 - chr12_KN196482v1_fix 1 18790 1 F AC093950.6 2005 20794 + chr12_KN196482v1_fix 18791 211377 2 F AC255545.1 2006 194592 + chr12_KN538370v1_fix 1 25997 1 F AC156455.1 1 25997 - chr12_KN538370v1_fix 25998 34983 2 D AC205581.1 1 8986 - chr12_KN538370v1_fix 34984 35110 3 W ABBA01020202.1 13403 13529 + chr12_KN538370v1_fix 35111 36477 4 W AUXG01000113.1 25557 26923 - chr12_KN538370v1_fix 36478 37033 5 W ABBA01060482.1 1 556 + chr12_KN538370v1_fix 37034 71733 6 F AC190384.1 1 34700 - chr12_KN538370v1_fix 71734 86533 7 F AC130894.5 8904 23703 + chr13_KN538372v1_fix 1 171908 1 F AL161418.14 1 171908 + chr13_KN538372v1_fix 171909 356766 2 F AL356585.7 2001 186858 + chr13_KN196483v1_fix 1 2641 1 F FP565796.3 1 2641 + chr13_KN196483v1_fix 2642 35455 2 F BX088568.4 1995 34808 + chr13_KN538373v1_fix 1 129540 1 F AL139374.19 2001 131540 + chr13_KN538373v1_fix 129541 148762 2 F AL391841.17 1 19222 - chr13_KN538371v1_fix 1 27640 1 F FP565324.3 2001 29640 + chr13_KN538371v1_fix 27641 29853 2 W AUXG01000135.1 19093 21305 - chr13_KN538371v1_fix 29854 35563 3 F FP565325.3 1 5710 + chr13_KN538371v1_fix 35564 47970 4 F BX537329.2 2001 14407 + chr13_KN538371v1_fix 47971 110204 5 F AL161774.49 1948 64181 + chr13_KN538371v1_fix 110205 110345 6 O KF511195.1 1 141 + chr13_KN538371v1_fix 110346 206320 7 F AL161774.49 64322 160296 + chr15_KN538374v1_fix 1 99241 1 F AC079090.4 1 99241 - chr15_KN538374v1_fix 99242 325986 2 F AC243653.3 1 226745 - chr15_KN538374v1_fix 325987 373022 3 W AMYH02030122.1 262715 309750 + chr15_KN538374v1_fix 373023 570276 4 F AC243660.3 1 197254 - chr15_KN538374v1_fix 570277 776772 5 F AC243913.2 1 206496 - chr15_KN538374v1_fix 776773 881652 6 F AC243951.3 1 104880 - chr15_KN538374v1_fix 881653 966409 7 F AC243657.2 122707 207463 + chr15_KN538374v1_fix 966410 1076278 8 W AMYH02030123.1 78561 188429 + chr15_KN538374v1_fix 1076279 1079711 9 N 3433 scaffold yes align_genus chr15_KN538374v1_fix 1079712 1292454 10 F AC243901.3 1 212743 - chr15_KN538374v1_fix 1292455 1473233 11 F AC243902.3 1 180779 - chr15_KN538374v1_fix 1473234 1654867 12 F AC243686.3 34966 216599 + chr15_KN538374v1_fix 1654868 1814701 13 F AC243652.4 45976 205809 + chr15_KN538374v1_fix 1814702 1981925 14 F AC243587.3 50260 217483 + chr15_KN538374v1_fix 1981926 2166692 15 F AC244165.2 21501 206267 + chr15_KN538374v1_fix 2166693 2301802 16 F AC243949.2 1 135110 - chr15_KN538374v1_fix 2301803 2451124 17 F AC243790.3 1 149322 - chr15_KN538374v1_fix 2451125 2643220 18 F AC243679.3 1 192096 - chr15_KN538374v1_fix 2643221 2698555 19 F AC247157.4 168160 223494 + chr15_KN538374v1_fix 2698556 2890474 20 F AC243687.3 27929 219847 + chr15_KN538374v1_fix 2890475 3031763 21 F AC244012.2 1 141289 - chr15_KN538374v1_fix 3031764 3236248 22 F AC243758.2 1 204485 - chr15_KN538374v1_fix 3236249 3426692 23 F AC243586.3 1 190444 - chr15_KN538374v1_fix 3426693 3581557 24 F AC243650.3 84236 239100 + chr15_KN538374v1_fix 3581558 3785140 25 F AC243688.3 1 203583 - chr15_KN538374v1_fix 3785141 3964356 26 F AC243759.3 14039 193254 + chr15_KN538374v1_fix 3964357 4116759 27 F AC243649.4 1 152403 - chr15_KN538374v1_fix 4116760 4284113 28 F AC243734.3 1 167354 - chr15_KN538374v1_fix 4284114 4481454 29 F AC243827.3 1 197341 - chr15_KN538374v1_fix 4481455 4501706 30 F AC253577.2 1 20252 - chr15_KN538374v1_fix 4501707 4535264 31 N 33558 scaffold yes align_genus chr15_KN538374v1_fix 4535265 4746524 32 F AC243655.3 1 211260 + chr15_KN538374v1_fix 4746525 4929534 33 F AC243948.1 1 183010 - chr15_KN538374v1_fix 4929535 4998962 34 F AC090982.4 1 69428 - chr15_KQ031389v1_alt 1 12516 1 F AC111152.2 11587 24102 + chr15_KQ031389v1_alt 12517 116749 2 P AC254979.1 1 104233 + chr15_KQ031389v1_alt 116750 241607 3 F AC254962.1 1 124858 - chr15_KQ031389v1_alt 241608 349073 4 F AC254958.1 1 107466 - chr15_KQ031389v1_alt 349074 458462 5 F AC254952.1 1 109389 - chr15_KQ031389v1_alt 458463 529084 6 F AC254957.1 1 70622 - chr15_KQ031389v1_alt 529085 1869010 7 N 1339926 scaffold yes align_genus chr15_KQ031389v1_alt 1869011 1932321 8 P AC254944.1 102435 165745 - chr15_KQ031389v1_alt 1932322 2062162 9 F AC254960.1 76 129916 + chr15_KQ031389v1_alt 2062163 2223307 10 F AC254945.1 9488 170632 + chr15_KQ031389v1_alt 2223308 2365364 11 F AC090877.4 39404 181460 + chr16_KQ031390v1_alt 1 61911 1 F AC092379.4 99401 161311 - chr16_KQ031390v1_alt 61912 101815 2 F AC203638.2 1 39904 + chr16_KQ031390v1_alt 101816 169136 3 F AC092379.4 1 67321 - chr19_KN196484v1_fix 1 8997 1 F AC005393.1 19222 28218 + chr19_KN196484v1_fix 8998 9289 2 O KF456579.1 1 292 + chr19_KN196484v1_fix 9290 104593 3 F AC005393.1 28511 123814 + chr19_KN196484v1_fix 104594 135460 4 F AC006950.1 8009 38875 + chr19_KN196484v1_fix 135461 157795 5 F AC011536.6 7386 29720 + chr19_KN196484v1_fix 157796 330910 6 F AC007842.1 895 174009 + chr19_KN196484v1_fix 330911 370917 7 F AC005614.1 7042 47048 + chr22_KN196485v1_alt 1 44422 1 F AC213220.1 1 44422 - chr22_KN196485v1_alt 44423 56101 2 F AC254560.1 23532 35210 + chr22_KN196485v1_alt 56102 156562 3 F BX247885.11 32786 133246 + chr22_KN196486v1_alt 1 38537 1 F AC208162.3 1 38537 + chr22_KN196486v1_alt 38538 62689 2 F AC254995.1 12971 37122 + chr22_KN196486v1_alt 62690 76240 3 F AC254561.1 29337 42887 + chr22_KN196486v1_alt 76241 153027 4 F BX247885.11 56460 133246 + chrY_KN196487v1_fix 1 14353 1 O GQ222231.1 1 14353 + chrY_KN196487v1_fix 14354 34757 2 O GQ222230.1 2001 22404 + chrY_KN196487v1_fix 34758 101150 3 F AC025226.4 101674 168066 -