##maf version=1 scoring=roast.v3.3
a score=549991.000000
s hg38.chr8_KI270814v1_alt        0 2020 +    141812 aaagcgtgggttgcaaagaagctcagtgagatcaacacaaagttgaaaatcaacacaaagaaatttctaaagcaatccaggaaatgaaggaagagataaatatcttaaaaagatattagagctcatgcctattatcccagcactttgggaggctgatgcaggtggatcccgaggtcaggagatggagacaatcctggccaacatggtgaaatcccgtctctactaaaaatacaaaaattagctgggcgtggtgttgggcacttgtaatcccagctactcgggaag-ctgaggcaggagtattacttgaacccaggaggcagaggttgcagtgagctgagatcatgccacggcactctaggctggcgacagagtgagactccatctcaacaaacaaacaaaaaaagatattagtcagaccttctgaaattgaaaacctcactcagtgaatttcaaaatataattgaaatttttattaatagactggacctaacagaaggaaaaatttcagaacttaaagaccaattttttttaactaacccagtgagacaaaaatgaaaaagaattttgataaattaacaaaatcttcaagaaatatgggattatgtaaagtgagcaaacttacgaattactggcattcctgcaagagaaggagaaaaagcagacaacgtggagactatatttgagggaataatttaaggaaatttccctaatcttgctagatgtaagtgtccagatacaagaaatccagaagacatttgcaagatactacacaaaatgaacaccaccaaggcatattatcaccagactgtcccaggtcaatcaatgaaaaactcataaaggcagcttgagaaaaagggcaagtcacatacaaaggaaaccacatcagg---------------------aaacctcagaagccaggacagtttaggggcctattttcagcattcttaaaagaagttccagccaggaatttcatatcccaccagactaagcttaataagtgaaggaaaaagacaatcttttctagacaaacaagcactaagagaagtcattaccacaagaggagctttgcaaaagatccttaagagagttctaaacgtagaaacaaaagaacaatatctgctaccacaaaaacacacataagtgcatagcctgcagactctacaaagcaaccacacaatagaaactgtaaatcagccagctaacaacttcaggataggatcaaaatctcacatatcaatattaatcttgaatgtaaatggcctaaatagcccgcttgaaaggcacagaatggcaagtcgaactaaaaaacaagacctgtccatctcctgtcttccagaaacccatctcacaaataatgatacccataggctcaaagtaaatggctagagaaggatctaccatgtaaacagaaaacaaaaaagagcagggggtcactattcttaggtaagataaaatggattgtaaatcagcaacagtaaaaaaggaccgagaagggcattacataatgataaagggttcaattcaacagaaaatttaagtatcttaaatatatacgcacgcaactttggagtacccagattcataaaatgagtacttctagacttacaaaaaggcttagccacacagtagtagcaggggactctatgcccactgaaagcattagacagattgaggcagaaaactaacaaagaaatgctggacttatactcagcacttgactagttggacttaatggacatctacagaatactccacttatcaaccacagaatatacattcttctcatctgcacatggaacatactccaagatcaactgcacactcaaccataaagcaagtcacaataaattcagaaagccaaaactcataccagccattctcttggaccacagtggaataaaaatagataccaatatcaagaatatctctgaaaaccacgcaattacatggaaactaaacaatttgcttctgaatgactttcgggcaaacagggaaatcatggcagaaacataaaaattctttgaaatacgtg
s panTro4.chr8             54940971 2040 + 143986469 aaagcgtgggttgcaaagaagctcagtgagatcaacacaaagttgaaaatcaacacaaagaaatttctaaagcaatccaggaaatgaaggaagagataaatatcttaaaaagatattagagctcatgcctattatcccagcactttgggaggctgatgcaggtggatcccgaggtcaggagatggagacaatcctggccaacatggtgaaatcccgtctctactaaaaatacaaaaattagctgggtgtggtgttgggcacttgtaatcccagctactcgggaag-ctgaggcaggagtattgcttgaacccaggaggcagaggttgcagtgagctgagatcatgccacggcactctaggctggcgacagagtgagactccatctcaacaaacaaacaaaaaaagatattagtcagagcttctgaaattgaaaacctcactcagtgaatttcaaaatataattgaaattttgattaatagactggacttaacagaaggacaaatttcagaacttaaagaccaattttttttaactaacccagtgagacaaaaatgaaaaagaattttgataaattaacaaaatcttcaagaaatatgggattatgtaaagtgaacaaacttacgaattactggcattcctgcaagagaaggagaaaaagcagacaacctggagactatattcgagggaataatttaaggaaatttccctaatcttgctagatgtaagtgtccagatacaagaaatccagaagacatttgcaagatactacacaaaatgaacagcaccaaggcatattatcaccagactgtcccaggtcaatcaatgaaaaaatcataaaggcagcttgagaaaaagggcaagtcgcatacaaaggaaaccacatcaggcaatagtagacttctcagcggaaacctcagaagccaggacagtttaggggcctattttcagcattcttaaaagaagttccagccaggaatttcatatcccaccagactaagcttaataagtgaaggaaaaagacaatcttttctagacaagcaagcactaagagaagtcattaccacaagaggagctttgcaaaagatccttaagagagttctaaac-tagaaacaaaagaacaatatctgctaccacaaaaacacacataagtgcatagcctgcagactctacaaagcaaccacacaatagaaactgtaaatcagccagctaacaacttcaggataggatcaaaatctcacatatcaatattaatcttgaatgtaaatggcctaaatagcccacttgaaaggcacagaatggcaagtcgaactaaaaaacaagacctgtccatctcctgtcttcaagaaacccatctcacaaataatgatacccataggctcaaagtaaatggctagagaaggatctaccatgtaaacagaaaacaaaaaagagcagggggtcactattcttaggtaagataaaatggattgtaaatcagcaacagtaaaaaaggactgagaagggcattacataatgataaagggttcaattcaacagaaaatttaagtatcttaaatatatacgcacgcaactttggagtacccagattcataaaatgagtacttctagacttacaaaaaggcttagccacacagtagtagcaggggactctatgtccactgaaagcattagacagattgaggcagaaaactaacaaagaaatgctggacttatactcagcacttgactagttggacttaatggacatctacagagtactccacttatcaaccacagaatatacattcttctcatctgcacatggaacatactccaagatcaactgcacactcaaccataaagcaagtcacaataaattcagaaagccaaaactcataccagccattctcttggaccacagtggaataaaaatagataccaatatcaagaatatctctgaaaaccacacaattacatggaaactaaacaatttgcttctgaatgactttcgggcaaacagggaaatcatggcagaaacataaaaattctttgaaatacgtg
i panTro4.chr8             N 0 C 0
s ponAbe2.chr8             58979030 2041 + 153482349 aaagcgtgggttgcaaagaagctcagtgagatcaacacaaagttgaaaatcaacacaaagaaatttctaaagcaatccaggaaatgaaggaagagataaatatcttaaaaagatattagagctcacgcctattatcccagcactttgggaggctgatgcaggtggatcgtgaggtcaggagatggagaccatcttggccaacatggtgaaatcccgtctctactaaaaatacaaaaattagctgggcgtggtgttgggcacttgtaatcccagctactcgggaagcctgaggcaggagtattgcttgatcccaggaggcagaggttgcagtgagctgagatcatgccacggcactctaggctggcgacagagtgagactccatctcaacaaacagacaaaaaaagatattagtcagagcttctgaaattgaaaccctcactcagtgaatttcaaaatataattgaaatttttatcaatagactggaccaaacagaaggaaaaatttcagaacttaaagaccaattttttttaactaacccaatgggacaaaaatgaaaaagaattttgataaattaacaaagtcttcaagaaatatgggattatgtaaagtgagcaaacttatgaattactggcattcctgcaagagaaggagaaaaagcagacaacctggagactatattagagggaataatttaaggaaatttccctaatcttgctagatgtaagtgtccagatacaagaaatccagaagacatttgcaagatactacacaaaatgaacatcaccaaggcatattatcaccagattgtcccaggtcaatcaatgaaaaaatcataaaggcagtttgagaaaaagggcaagtcacatacaaaggaaaccacatcaggcaatagaagacttctcagcggaaacttcagtagccaggacagtttaggggcttattttcagcattcttaaaggaaattccagccaggaatttcatatcccaccagactaagcttaataagtgaaggagaaagacaatc-tttctagacaagcaagcactaagagaagtcattaccaccagaggagctttgcaaaagatccttaagagagttctaaatgtagaaacaaaagaacaatatctgctaccacaaaaacacacataagtgcatagcctgcagactctacaaagcagccacacaatagaaactgtaaatcagccagctaacaacttcaggataggatcaaaatctcacatatcaatattaatcttgaatgtaaatggcctaaatgccccgcttaaaaggcacagaatggcaagtcgaactaaaaaacaagacctgtccatctcctgtctttaagaaacccatctcacacataatgatacccataggctcaaagtaaatggctagagaaggatctgctatgtaaacagaaaataaaaaagagcagggggtcactattcttaggtaagataaaatggattgtaaatcagcaacagtaaaaaaggaccgagaagggcattacataatgataaagggttcaattcaacagaaaacttaagtatcttaaatatatacgcacgcaactttggagtacccagattcataaaatgagtacttctagacttacaaaaaggcttagccacacagtagtagcaggggactctatgcccactgaaagcattagacagattgaggcagaaaactaacaaagaaatgctggacttatactcagcacttgactagttggacttaatggacatctacagaatactccacttatcaaccacagaatgtacattcttctcatctgcacatggaacatactccaagatcaactgcacactcaaccataaagcaagtcacaataaattcagaaaaccaaaactcacaccagccattctcttggaccacagtggaataaaaatagatatcaatatcaagaatatctctgaaaaccacacaattacctggaaactaaacaatttgcttctgaatgactttcaggcaaacacggaaatcatggcagaaacataaaaattctttgaaatacatg
i ponAbe2.chr8             N 0 C 0

a score=703936.000000
s hg38.chr8_KI270814v1_alt     2020 1369 +    141812 acagcagagacacaacacatcaaaatctctgaggtacagcaaaaacagtgttgagaggaaagtatatagcactaaacacctccctgaaaaagttagatctcaaattaacgttctaacatcacagttagaagaactagaaaaacaagaacgaactaaccccaaagctagcagaaggaaagaaataacaaaaccggagctgaccagaatgaaggtaagacccccaaaccctggcaaagactcaacacaaccaaaagtttgtttattgaaaggataaagtgaatcgatagattgctagctatagtaacaaaaaaaaaa-aaagagagaaaatcaaataagcacaattagaaccaataaaggtgacattacaacctattccatagaaatacagaaagatcttctgtgactattatgaatgcctctatgcatgcaaactagaacatctacaggaaatggataaattcctggaaat--acagtctcccaagattgaatcaggaagaaactgaaacactcaacag-ccattattgagttccagaattgagtctgtaatgaaaaacctgccaaacaacaaaacatccctggaccagatggattcacagccgaattctacccaaggtgtaaagaagaactggtaccaatattctccagacactattcaaaaaagttgaggaggagggatctctccctaactcattctatgaagccatcatcactctgataccaaaacctggtaaagacaccgaaaaaagaaaactacaggccaggattcctgataaacatagacacaaaagtgctcaacaaaatactagcaaaccaaatttcaacagcacatcaaaaagttaattcatcatgatcaagtaggctttattcctcagatttgcaaagatggtttgatttatgcaaatcagtagatatgattcaccacataagtagaattaaaa-tgaaaattatgtgattatttcaatagatgtggcagaagctttcaatgaaatctaacatttcttcatgataaaaaccctcaagaaacaaggtatcaaaggaacatacctcaaaatactaagaaccatctatggcaaacccacaaccaacactatattgaatgggcagaaactgaaagtattccccttgagaacaggacaaggatgcacactctcatcactcctattaaacgtagtgctggaagtgctagccacagcagttagccaagagaaagaaagaaaaagcatccaaataggaaaagaagaagtcaaaatgttgttctttgctgatggcatgattgtatacttaggaaatctaa-----ggactctgccaaaaggctattaaaattgataaatgattttagcaagatttcaggatataataccaatgtataaaa
s panTro4.chr8             54943011 1367 + 143986469 acagcagagacacaacacatcaaaatctctgaggtacagcaaaaacagtgttgagaggaaagtatatagcactaaacacctccctgaaaaagttagatctcaaattaacgttctaacatcacagttagaagaactagaaaaacaagaacgaactaaccccaaagctagcagaaggaaagaaataacaaaaccagagctgaccagaatgaaggtaagacccccaaaccctggcaaagactcaacacaaccaaaagtttgtttattgaaaggataaagtgaatcgatagattgctagctatagtaacaaaaaaaaaa----gagagaaaatcaaataagcacaattagaaccaacaaaggtgacattacaacctattccatagaaatacaaaaagatcttctgtgactattatgaatgcctctatgcacgcaaactagaacatctacaggaaatggataaattcctggaaat--acagtctcccaagattgaatcaggaagaaactgaaacactgaacag-ccattattgagttccagaattgagtgtgtaatgaaaaacctgccaaacaacaaaacatccctggaccagatggattcacagccgaattctacccaaggtgtaaagaagaactggtaccaatattctccagacactattcaaaaaagttgaggaggagggatctctccctaactcattctatgaagccatcatcactctgataccaaaacctggtaaagacaccgaaaaaagaaaactacaggccaggattcctgataaacatagacacaaaagtgctcaacaagatactagcaaaccaaatttcaacagcacatcaaaaagttaattcatcatgatcaagtaggctttattcctcagatttgcaaagatggtttgatttatgcaaatcagtagatatgattcaccacataagtagaattaaaaatgaaaattatgtgattatttcaatagatgtggcagaagctttcaatgaaatctaacatttcttcatgataaaaaccctcaagaaacaaggtatcaaaggaacatacctcaaaatactaagaaccatctatggcaaacccacaaccaacactatattgaatgggcagaaactggaagtattccccttgagaataggacaaggatgcacactctcaccactcctattaaacgtagtgctggaagtgctagccacagcagttagccaagagaaagaaagaaaaagcatccaaataggaaaagaagaagtcaaactgttgttctttgctgatggcatgattgtatacttaggaaatctaa-----ggactctgccaaaaggctattaaaattgataaatgattttagcaagatttcaggacataataccaatgtataaaa
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58981071 1368 + 153482349 acaacagagacacaacacatcaaaatctctgaggtacagcaaaaacagtgttgagaggaaagtatgtagcactaaacacctccctgaaaaagttagatctcaaattaacgttctaacatcacacttagaagaactagaaaaacaagaacaaactaaccccaaagctagcagaaggaaagaaataataaaaccagagctgaccagaatgaaggtaagacccccaaaccctggcaaagactcaacacaaccaaaagtttgtttattgaaaggataaagtgaatcgatagattgctagctatagtaacaaaaaaaaaaaaaagagagaaaatcaaataagcacaattagaaccaacaaaggtgacgttacaacctattccatagaaatacaaaaagatcctctgtgactattatgaatgcctctatgcacacaaactagaacatctacaggaaatggataaattcctggaaat--acagtctcccaagattgaatcaggaagaaactgaaacactgaacag-ccattattgagttccagaattgagtctgtaatgaaaaacctgccaaacgacaaaacatccctggaccagatggattcacagccgaattctacgcaaggtgtaaagaagaactggtaccaatattctacagacactattcaaaaaagttgaggaggagggatctctccctaactcattctatgaagccatcattactctgataccaaaacctggtaaagacctcgaaaaaagaaaactacaggccgggattcctgataaacatagacacaaaagtgctcaacaaaatactagcaaaccaaatttcaacagcacatcaaaaagttaattcatcatgatcaagtatgctttattcctcagatttgcaaagatggtttgatttatgcaaatcagtagatatgattcaccacataagtagaattaaaaatgaaaactatgtgattatttcaatagatgtggcagaagctttcaatgaaatctaacatttcttcatgataaaaaccctcaagaaacaaggtatcaaaggaacatacctcaaaatactaagaactgtctatggcaaacccacaatcaacactataatgaatgtgcagaaactggaagtattccccttgagaacaggacaaggatgctcactctcaccactcctattaagcgtagtgctggaagtgctagccacagcagttagccaagagaaagaaagaaaaagcatccaaataggaa---aagaagtcaaactgttgttctttgctgatgacatgattgtatacttaggaaatctaa-----ggactctgccagaaggctattaaaattgataaatgattttagcaagatttcaggatataataccaatgtattaaa
i ponAbe2.chr8             C 0 C 0
s chlSab2.chr8             53222323 1366 + 139301422 ACaacagagacacaacatatcaaaatatctggggtacagcaaaaacagtgttgagaggaaagtatatagcactaaacacctccttgaaaacgttagacctcaaattaacattctaacatcacacttagaagaactagaagaacaagaacaaactaaccccaaagctagcagaaggaaagaaataacaaaaccagagctgaatagaatgaaggttagacccccaaaccctagcaaagactcaacacaaccaaaagtttgttccttgaaaggataaagtgaattgatagattgttagctatattagcagaaaaaaaa--aagagagaaaatcaaataagcacaatttgaaccaataaaggtcacattacaacctattccatagaaatacaaaaagatcccctgtgactgttatgaatacctctatgcgtgcaaagtaaaacatctataggaaatggataaattgctggaaatacacagtctcccatgactgaatcaggaagaaactgaaacactgaacagaccattgtcaagttccagaattaaatctgtaatgaaaaacctgctgaacaacaaaacattcctgggccagatggattcacagccgaattttacccaaggtgtaaagaagaactggtaccattattctatagacactattcgaaaaagttgaggaggagggacctctccctaactcattctgtgaagccagcatcactctgataccaaaacccggtaaagacactgaaaaaagaaaactacaggccaggattcctgataaatatagacacaaaagcgctcaacaaaatactagcaaacc-aatttcaacagcacatcaaaaagttaattcatcatgatcaagtaggctttattcctc----------agatggtttgacttatgcaaatcagtagatatgattcaccacataagtagaattaagaatgaaaactatgtgattgtttcaatagaagtagcaaaagctttcaatgaaatctaacatttcatcatgataaataccctcaagaaataaagtatcaaaggaacatacctcaaaatactaagaaccatctatggcaaacccacaaccaacactatattgaatgggcagaaactggaaacattccccttgagaacaggataaggatgcccactctcaccactcctattaagcatagtgctggaagtgctagccacagcagttagccaagagaaacaaagaaaaagcatccaaataggaaaagaagaagtcaaactgttgttctttgctgatgacgtgattgtgtacttaggaaatctaaggactggactctgccaaaaggctattaaaattgataaatgattttagcaagatttcaggatacaaaaccagtgtatgtaa
i chlSab2.chr8             N 0 C 0

a score=486309.000000
s hg38.chr8_KI270814v1_alt     3389 632 +    141812 aaacagcatttctataaaccaataatgttcaagctgagagccaaatcaagaatgtaatctcatttataatagccacacagacaaaacatacctatgaatatacctaaccaaggaggtgaaagaactctacaaggagaactacaaaatactactaaaataaatcatagatgtcacaaaccaatggaaaacctctcagcttatggattggacgagtcaatatcattaaaatggcaatactactcaaagcaatctacagattcaacactgttcctgtcaaactactgatgtcatttttcacagaattggaaaaa-----ctatgctaaaacatatatggaaccaaaaaagagcctgagtagctaaagcgatcctaagcaaaatgaacaaaatcaggggcataacattacctgacttcatactatactataaggatacggtaagcaaaacagcatgataccggtacaaaaacaaatagagcaatggaacagaacagagaacccagaaataaagccacacatctatagctgtcttcaacaaaattgacaaa-------------------------aataagtggtgctagga-aactggccagccatctgcagaagaatgaaactggatacctgcctttcaccatgtgcaaaaatcaactcaagata
s panTro4.chr8             54944378 629 + 143986469 aaacagcatttctataaaccaataatgttcaagctgagagccaaatcaagaacgtaatctcatttataatagccacacagacaaaacatacctatgaatatacctaaccaaggacgtgaaagaactctacatggagaactacaaaatactactaaaataaatcatagatgtcacaaaccaatggaaaacctctcagcttatggattggacgagtcaatatcattaaaatggcgatactactcaaagcaatctacagattcaacactgttcctgtcaaactactgatgtcatttttcacagaattggaaaaa----actatgctaaaacatatatggaaccaaaaaagagcctgagtagctaaagcaatcctaagcaaaatgaacaaagtcaggggcataacattacctgacttcaca-tatactataaggttacggtaagcaaaacagcatgataccggtacaaaaacaaatagagcaatggaacagaacagagaacccagaaataaagccacacatctatagctgtcttcaacaaaattgacaaa-------------------------aataagtggtgctagga-aactgaccagccatctgcagaagaatgaaactggatacctgcctttcacc---tgcaaaaatcaactcaagata
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58982439 634 + 153482349 aaacagcatttctatataccaataatgttcaagctgagagccaaatcaagaacgtaatctcatttataatagccacacagacaaaacatacctatgaatatacctaaccaaggaggtgaaagagctctacaaggagaactacaaaatactgctaaaataaatcatagatgtcacaagccaatggaaaacctctcagcttatggattggacgagtcaatattattaaaatggcaacaccactcaaagcaatctagagattcaacactgttcctgtcaaactactgatgtcatttttcacagaattggaaaaa---aactatgctaaaacatatatggaaccaaaaaagagcctgagtagctaaagcaatcctaagcaaaatgaacaaagtcaggggcataacattacctgacttcatactatactataaggatacagtaagcaaaacagcatgataccggtacaaaaacaaatagagcaatggaacagaacagagaacccagaaataaagccacacatctatagctatcttcaacaaaattgacaag-------------------------aataagtggtgctagga-aactggccagccatctgcagaagaatgaaactggatacctgactttcaccatgtgcaaaaattaactcaagata
i ponAbe2.chr8             C 0 C 0
s chlSab2.chr8             53223689 633 + 139301422 aagcagcatttctatataccaataatgttcaagctgagagccaaatcaagaatgtaatctcatttgtaacagccacacagacaaaacatacttatgaatatacctaaccaaggaaatgaaagagctctacaaggaaaactacaaaatactgctaaaataaatcatagatgacacaaactgatgg-aaacttctcagctcatggactgaaagagtcagtgtcattaaaatggcaatactactcaaagcaatctacagattcatcactgtccctgtcaaactagtgatgtcatttttcacagaattggaaaaa---aactatgctaaaatgtatatggaaccaaaaaagagcctgagtagctaaagcaatcttaagcaaaatgaacaaagtcaggggcataacattgcctgacttaatactatactataaggatacagtaagcaaaacagcatgatactggtacaaaaacaaatagaggaatagaacagaacagagaacccagaaataaagccacacatctatagctgtcttcaacaaaactgacaaa-------------------------aataaatggtgctagga-aactggccagccgtctgcagaagaatgaaattggatacctacctttcaccatgtgtaaaaattaactcaagGta
i chlSab2.chr8             C 0 C 0
s saiBol1.JH378179          2730096 647 +  10880647 aaacagcatttctgtatatcaataatgttcaagctgagagccaaatcaagtacataatgccatttacaatagccacacagac--agcataactatgaatataattaatgaagggggtgaaagagttctacaaggagaactatgaaacactgctaaaataaatcacagatgacacaa----agggaaaacctgtcagctcatggattggaagagtcactattactcaaatggcaatgctacccaaagcaatctacagattcaacactattcctgtcaaactaccaatgtcatttttcagagaattagggtgggggaactatactaaaatgtatatggaactaaaaaagaacctgagtagctaaagcaatcttaagcaaaatgaacaaactcagaggtgtaacattactggacttcagactgtattgtaaggatacagtaagcaaaacaacatgacattggtacaaaaacaaatagaccagtg-----agacagagaacccagaaataaagctgcacatctacagctgtcttcaacaaaattgaaaggcaggggggtaaaggactccctattcaataaatgattctgggataactggccagccacctgcagaagaatgaaactggacacctacctttcacgatgtgcaaaaatt-----aGGAta
i saiBol1.JH378179         N 0 C 0

a score=825384.000000
s hg38.chr8_KI270814v1_alt     4021 895 +    141812 gcctctaacaagaatgtcagcctgtctgttgaagctttcaaaccaggcattgacttctcttctatagctaggaaacgtctgaatggcgtcttcttccaataggaggctgtttgatctacactgaaaatccgttatttggtgtagccacctttatctgtcatcttagtaagatcttctggataacttgctgcagctgttacctcagcacttgctgcttcaccttgcatttttgtgttctggagatagcttcttttcttaaacgtcat-aacagcacctgttagcttcaaaattttcttctgcagtttcacc-tctctcagcctttatagaattgaaga-agttagggtcttgatgtggactaggctttagcttaagggaatgttgtggctggtttgagcttctatcca----tatgattaaa-----ctttatattagcaataaggctgttttgctttcttatctgttgtgtgttcagtggaatagcacttttaattttttccaagaactttttattttgcattcacaacatgac----tggtgcaagaggcctagctttcagcctgtctctgcttttggcat-gccttcctcaccaagcttaatgatttctag--cttttgatttaacgtgag--acctgggactcttccctttcatttgaacacacaggggccattgtagggttattaattggcctaa-ttttaatgattgttgtgtctcagggaatgaggaggccccaaaagagg--gagcgagatggggaattggctggtcggtggagcagtcagaacacacacaacattgatcaattaagtttgctatctcaggtgggcacggtttgcggtcccaccgcaaataattacagtcataacatcaaagattgctgatcacagactactataacaggcataatcatagt
s panTro4.chr8             54945007 894 + 143986469 gcctctaacaagaatgtcagcctgtctgttgaagctttgaaaccaggcattgacttctcttctatagctaggaaacatctgaatggcgtcttcttccaataggaggctgtttgatctacatcgaaaatccgttatttggtgtagccacctttatctgtcatcttagtaagatcttctggataacttgctgcagctgctacctcagcacttgctgcttcaccttgcatttttgtgttctggagatagcttctttccttaaatgtcat-aacagcacctgttagcttcaaaattttcttctgcagtttcacc-tctctcagcctttatagaattgaaga-agttagggtcttgatctggactaggctttagcttaagcgaatgttgtggctggtttgagcttctatccg-----atgattaaa-----ctttatattagcaataaggctgttttgctttcttatctgttgtgtgttcagtggaatagcacttttaattttttccaagaactttttcttttgcattcacaacatgac----tggtgcaagaggcctagctttcagcctgtctctgcttttggcat-gccttcctcaccaagcttaatgatttctag--cttttgatttaacgtgag--acctgggactcttccctttcatttgaacacacagaggccattgtagggttattaattggcctaa-ttttaatgattgttgtgtctcagggaatgaggaggccccaaaagagg--gagcgagatggggaattggctggtcggtggagcagtcagaacacacacgacattgatcaattaagtttgctatctcagatgggcaaagtttgcggtcccaccgcaaataattacagtcataacttcaaagattgctgatcacagactactataacaggcataatcatagt
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58983073 893 + 153482349 gcctctaacaagaatgtcagcctgtctgttgaagctttgaaaccaggcattgacttctcttctatagctaggaaacgtctgaatggcgtcttcttccaataggaggctgtttgatctacattgaaaatccgttatttggtgtagccacgtttatctgtgatcttagttagatcttctggataacttgctgcagcttctacctcagcacttgctgcttcaccttgcatttttgtgttctggagatagcttctttccttaaacgtcat-aacagcgcctgttagcttcaaaattttcttctgcagtttcacc-tctctcagcctttatcgaattgaaga-agttagggtcttgatctggactaggctttagcttaagggaatgttgtggctggtttgagcttctatcca----gatgattaaa-----ctttatattagcaataaggctgttttgctttcttatctgttgtgtgttcagtggaatagcacttttaattttttccaagaactttttcttttgcattcacaacatgac----tggtgcaagaggcctagctttcagcctgtctctgcttttggcat-gccttcctcaccaagtttaatgatttctag--cttttgatttaatgtgag--acctgggactcttccctttcatttgaacacacaggggccattgtagggttattaattggcctaa-ttttaatgattgttgtgtctcagggaatgagaaggccccaaaagagg--gagcgagatggggaattggctggttggtggagcagtcagaacacacacaacgctgatcaattgagtttgctatctcaggtgggcacggtttgcggtgcccc--taaataattacagtcataacatcaaagattgctgatcacagactactataacaggcataatcatggt
i ponAbe2.chr8             C 0 C 0
s chlSab2.chr8             53224322 869 + 139301422 gcctctaacaagaatgtcagcttgtctgttgaaactttgaaaccaggaattgacttctcttctataactgtgaaatgtctgaatggcatcttcttccaatagaaggctgtttgatctacattgaaactccattatttgatgtaagcacctttatctgtgatctt----agatcttttggataacttgctgcagcttctgccttagcacttgctgcttcaccttgcgtttttgttttctggagatagcttccttccttaaacgtcatcagcagcacctgttagcttcaaaattttcttttgcagtttcac---ctctcagcctttatagaactgaagagagttagggtcttgatctggactaggctttagtttaagggaatgttgtggctgatttgagcttctatcca-------------------------attagcaatacgactgttttgctttcttacctgttgtgtgttcggtggaatagcacttttaattttttccaagaactttttcttttgcattc---acatgac----tggtgcaagaggcttagctttcagcctgtctctgcttttggcat-gccttccttaccaagcttaatgatttctag--cttttgatttaacgtgac--acctgggactcttccctttcacttgaacacacaggggccattgtagagttattaattggcctaa-ttttaatgattgtcacgtctcagggaatgaggaggccccaaaagagg--gagtgagatggggaattggctggtcagtggagcagtcagaacacacacaacattgatcaattaagtttgctatctcaggtgggcccggtttttggtgcccc--taaataattacagtcataacatcaaagattgctgatcacagactactgtaacaggcat-atcatagt
i chlSab2.chr8             C 0 C 0
s saiBol1.JH378179          2730743 868 +  10880647 tcctctctcaagaatgtccgtctgtctgtcgaagctttgaagccaggcattgacttctctttgctggctaggaaatgtctgaa--atggcctcttccaatgggaggctgtttgatctacattgaaaatctgttgtttggtgtagtcaccttcatccgtgatcttagttagatcttctggataacttgctgcagcttctacctcagcacttactgcttcaccttgcatttt---------------------ttccataaacatcatgaacagcatctgttagcttcaaaattttcttctgcagtttcacc-tctctcagccttcatagaacagaagagagttagggtcttgatctggtctaggctttagcttaagggaatgttgtggccattttgagcttctatcca----gatggttaaa-----ctttattttagtgatgaggctgttttgctttcttatcttttgtgtgttcagtggaatagcacctttaattttctccaagaactttttcttttgcattcacagcatgactag-tggtacaagaggcttagctttcagcctgtttctgcttttggcat-gccttcctcaccaaacttaatgatttctag--cttttgatttaacatgaa--acctccgactctt-cctttcacttgaacacataggggcgattgtagggttattaattgacctaatttttaatgattactgtgtctcagggaatggggagacaccaaaagagggagagagagatggggaattggctggtca---gagcagtcagaacacacacaatatttatcaattaagtttgctatcttatgtgggcatggtttgtggtacgcc--taaataattacagtcataacatcaaagattgctgacagcag---actgtaacaggcataatagt---
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21538340 849 -  23169006 gcccctaacaggagagtcagcctgtcctcggaagctttgaagccaggc-------tctc-tctctagctatgaaagtcttaggtggtatcttattccaagagaaggctgttttgtctgtgttgaaaatctcttgtccagtgtggtcaccggcaccagttctctta---------ccttggtccctggctgcagcttctg--tcagcatacgctgcctcatctcgttagcttatgcagt-gacatcaccactttgcctgaaccttgctaacctgcctcgccggcttcagagtgttc---tgcagcttcatcacctctcagctttcagagaatttcagggaattaaggatttgccctggattaggttttggcttaagggaatgttgtggctggtttgatcttctgtctatctagatcactaaaactttctccgtgtcagcaatgagaatgttt---tttcttatcatttgtaagctcactggagtagcattttaaatttccttcaagaac-ttttcctttgcattcacaacttagctaactggtgcaggaaggc-agcttttggcctgtcttggcttttggcataactttcctcactaagcttaatcgtttatagtttttttgattttaagtcagtaatgtgtggctctt-cccttcatttgaatacttagaggccattgtagggttattaattggcttaa-tttcagtattt---ttgtctcaaggcctgagga----------------cagtggggtgggca----gcctatcagtgaagcagtcaggccacttgaaacattttcctgctaagtcccatgtctttgctgggtgcactttgtgatgt-----------------gtagtaacatcagaagcccctgatcccagagcactgtaacagatgcagtaataac
i otoGar3.GL873541         N 0 C 0

a score=4785.000000
s hg38.chr8_KI270814v1_alt     4916  7 +    141812 ----aaaaatt-
s panTro4.chr8             54945901  7 + 143986469 ----aaaaatt-
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58983966  7 + 153482349 ----aaaaatt-
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8             58298649  5 + 146850525 ----aaaaa---
i macFas5.chr8             N 0 C 0
s chlSab2.chr8             53225191  7 + 139301422 ----aaaaatt-
i chlSab2.chr8             C 0 C 0
s saiBol1.JH378179          2731611  7 +  10880647 ----aaaaatt-
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21539189 12 -  23169006 aacgaaaacctt
i otoGar3.GL873541         C 0 C 0

a score=317318.000000
s hg38.chr8_KI270814v1_alt     4923 169 +    141812 ggaaatattgtgagaattaccaaaatgt--------gacttgaagggagtatatgggactagaaaaatagtgctaaccgtctgacacag-tgcagggttgccacaaaccttcaagttggaaaaaactcagtatctgcaaagcacagtgcaatgaaacgagttatgcttgT-ATTACTAT
s panTro4.chr8             54945908 169 + 143986469 ggaaatattgtgagaattaccaaaatgt--------gacttgaagggagtacatgggactagaaaaatagggctaacagtctgacacag-tgcagggttgccacaaaccttcaagttggaaaaaactcagtatctgcaaagcacagtgcaatgaaacaagttatgcttgT-ATTACTAT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58983973 177 + 153482349 ggaaatattgtgagaattaccaaaatgtgactcagagacttgaagggagtacatgggactagaaaaatattgctaagaatctgacacag-tgcagggttgccacaaaccttcaagttggaaaaaactcagtatctgcaaagcacagtgcaatgaaacgagttatgcttgT-ATTACTAT
i ponAbe2.chr8             C 0 C 0
s rheMac3.chr8             61625410 177 + 150158102 ggaaatattgtgagaattaccaaaatatgactcagagacatgaagggagcacatgcgactagaaaaatagtgctaagaatctgacacag-tgcagggttgccacaaaccttcaagttagaaaaaactcagtatctgcaaagcacagtgcaatgaaatgagttatgcttAT-ATTACTAT
i rheMac3.chr8             N 0 C 0
s macFas5.chr8             58298654 177 + 146850525 ggaaatattgtgagaattaccaaaatatgactcagagacatgaagggagcacatgcgactagaaaaatagtgctaagagtctgacacag-tgcagggttgccacaaaccttcaagttagaaaaaactcagtatctgcaaagcacagtgcaatgaaatgagttatgcttAT-ATTACTAT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53225198 177 + 139301422 ggaaatattgtgagaattaccaaaatatgactcagagacatgaaggcagcacatgcgactagaaaaatagtgctaagagtctgacacag-tgcagagttgccacaaaccttcaagttagaaaaaactcagtatctgcaaagcacagtacaatgaaatgagttatgcttgT-ATTACTAT
i chlSab2.chr8             C 0 C 0
s saiBol1.JH378179          2731618 175 +  10880647 ggaaatatcatgagaattaccaaagtgtgactcagaaacatgaaatgaacagatacaattggaaaaattgtgctaagagactgacacaa-tgaagggttgccgtaaaccttcaagttggaaaaaactcagtatctgcaaa--actgtgtgataaaatgagttatgcttgT-ATTACTAT
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21539201 160 -  23169006 ccaagtgttgcaagaattactaaagtgt--------gacacaaagtgagcacatgctgttggaaaag-ggtgttgatagaaaggcttggatgcggggtggctgcaaaccttcaagttggagaaaa----------ggaaagcaaaatgggacaaaatgaggtctgtctgTAATTGATCA
i otoGar3.GL873541         C 0 C 0

a score=116882.000000
s hg38.chr8_KI270814v1_alt     5092 30 +    141812 TTTTACCTGCTTCTGTTTGGTCTTTGC--TTT
s panTro4.chr8             54946077 30 + 143986469 TTTTACCTGCTTCTGTTTGGTCTTTGC--TTT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58984150 30 + 153482349 TTTTACCTGCTTCTGTTTGGTCCTTGC--TTT
i ponAbe2.chr8             C 0 C 0
s rheMac3.chr8             61625587 30 + 150158102 TTTTACCTGCTTCTGTTTGGTCTTTAC--TTT
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58298831 30 + 146850525 TTTTACCTGCTTCTGTTTGGtctttgc--ttt
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53225375 30 + 139301422 TTTTACCTGCTTCTGTGTGGTCTTTGC--TTT
i chlSab2.chr8             C 0 C 0
s saiBol1.JH378179          2731793 30 +  10880647 TTTTACCTGCTTCTATTTGGTCTTTGA--TTT
i saiBol1.JH378179         C 0 I 47
s otoGar3.GL873541         21539361 30 -  23169006 TTTTACCCACTTCTGCTTGGTCTTACC--ttt
i otoGar3.GL873541         C 0 C 0
s orcOrc1.KB316907         11141776 30 +  17242564 TTTTACCTACTTGTATTTGGCCTCAGC--TTT
i orcOrc1.KB316907         N 0 C 0
s cerSim1.JH767782          7111013 30 -  14545593 TTTTACCTGCTTCTATTTGGTCTCAGC--TTT
i cerSim1.JH767782         N 0 C 0
s pteAle1.KB030580         19636524 32 -  23789964 TTTTACCAACTTCTGTTTGGCCTAAGCTTTTT
i pteAle1.KB030580         N 0 C 0

a score=40551.000000
s hg38.chr8_KI270814v1_alt     5122 32 +    141812 TCTTTCCAttttatttt--------attttaatgtttttt
s panTro4.chr8             54946107 32 + 143986469 TCTTTCCAttttatttt--------attttaatgtttttt
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58984180 32 + 153482349 TCTTTCCAttttatttt--------attttaatgtttttt
i ponAbe2.chr8             C 0 C 0
s rheMac3.chr8             61625617 32 + 150158102 TCTTTCCATTTTATTTT--------ATTTTAATGGTTttt
i rheMac3.chr8             C 0 I 411
s macFas5.chr8             58298861 32 + 146850525 tctttccattttatttt--------attttAATGGttttt
i macFas5.chr8             C 0 I 14
s chlSab2.chr8             53225405 32 + 139301422 TCTTTCCAttttatttt--------attttaatggttttt
i chlSab2.chr8             C 0 I 7
s otoGar3.GL873541         21539391 11 -  23169006 -------------tttt--------tttttta--------
i otoGar3.GL873541         C 0 C 0
s orcOrc1.KB316907         11141806 32 +  17242564 -------TTTTTTTTTT-AACCATCATTTATAAGTTTCTG
i orcOrc1.KB316907         C 0 I 3
s cerSim1.JH767782          7111043 33 -  14545593 -------GTTTTTTTTTAAACTATCATCTCCAGATTTCTT
i cerSim1.JH767782         C 0 I 3
s pteAle1.KB030580         19636556 30 -  23789964 -------TTTTTTTTTTAAACT---ATCTGCAAGTTTCTT
i pteAle1.KB030580         C 0 I 49
e saiBol1.JH378179          2731823 47 +  10880647 I

a score=13420.000000
s hg38.chr8_KI270814v1_alt     5154 7 +    141812 attgaga
s panTro4.chr8             54946139 7 + 143986469 attgaga
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58984212 7 + 153482349 attgaga
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8             58298907 7 + 146850525 tttgaga
i macFas5.chr8             I 14 C 0
s chlSab2.chr8             53225444 7 + 139301422 tttgaga
i chlSab2.chr8             I 7 C 0
s otoGar3.GL873541         21539402 7 -  23169006 atagaga
i otoGar3.GL873541         C 0 C 0
s orcOrc1.KB316907         11141841 7 +  17242564 ACTGAGA
i orcOrc1.KB316907         I 3 C 0
s cerSim1.JH767782          7111079 7 -  14545593 ATTGAGA
i cerSim1.JH767782         I 3 I 46
e pteAle1.KB030580         19636586 49 -  23789964 I
e rheMac3.chr8             61625649 411 + 150158102 I
e saiBol1.JH378179          2731823 47 +  10880647 I

a score=223040.000000
s hg38.chr8_KI270814v1_alt     5161 240 +    141812 cggagtcttgctcagtcgcct------aggctggagtgcagtggcacaatcttggctcactgcaacctccgcctcctgggatcaagcaattcttccgcctcagc-----------ctcctgagtagctgggattacaggtacccgctgtcacgcccagctactttttgtagttttgtagagacagggtttcaccatgttggccaggctggtcatgaactcctga-cctcaggtgatctgcccatcttggcctccccac
s panTro4.chr8             54946146 240 + 143986469 cagagtcttgctcagtcgcct------aggctggagtgcagtggcgcaatcttggctcactgcaacctccgcctcctgggatcaagcaattcttccgcctcagc-----------ctcctgagtagctgggattacaggtacccgtcatcacgcccagctactttttgtagttttgtagagacagggtttcaccatgttggccaggctggtcatgaactcctga-cctcaggtcatctgcccaccttggcctccccac
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58984219 240 + 153482349 cggagtcttgctcagtcacct------aggctggagtgcagtggcgcgatcttggttcactgcatcctctgtctcctgggatgaagcaattcttccgcctcagt-----------ctcctaagtagctgggattacaggtacccgccatcacgcccagctactttttgtagttttgtagagacagggtttcaccatgttggccacactggtcatgaactcctga-cctcaggtgatctgcccacttcggcctccccac
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8             58298914 239 + 146850525 cggagtcttgctcgatcgccc------aggctggagtgcagtggcgcgatcttggctcaccgcaacatctgcttcccgggatcaagcaattctt-cgcctcagc-----------ctcccgagtagctgggattacaggtacccgttgtcatgcccagctactttttgtagttttgcagagacaaggtttcaccatgttggccaggctggtcatgaactcatga-cctcaggtgattcgcccgcctcggcctccccac
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53225451 250 + 139301422 tggagtcttgcttgatcaccc------aggctggagtgcagtggtgtgatcttggctcactgcaatatccgcttcccgggatcaagcaattctt-tgcctcagcacctgttgatgctcccgagtagctgggattacaggtacccgctgtcatgcccagctactttttgtagttttgcagagacaaggtttcaccatgttggccaggctggtcatgaactcatga-cctcaggtgatttgcccgccttggcctccccac
i chlSab2.chr8             C 0 C 0
s otoGar3.GL873541         21539409 219 -  23169006 c--agtctcactttatcaccctcagtagagttcgagttctgtggc---atcacagctgacagtaacctccagcttttgggcttagatgattctcttgcctcagc-----------ctcccgagtagctgggactacaggcgcccgccacagtgcccggctgtttttt----tgttgcag-----------------tttgaccagactgggttcaaactcgccaccctcagtatatgggaccagc--gccctacccac
i otoGar3.GL873541         C 0 I 115
e pteAle1.KB030580         19636586  49 -  23789964 I
e cerSim1.JH767782          7111086  46 -  14545593 I
e orcOrc1.KB316907         11141848   0 +  17242564 C
e rheMac3.chr8             61625649 411 + 150158102 I
e saiBol1.JH378179          2731823  47 +  10880647 I

a score=51061.000000
s hg38.chr8_KI270814v1_alt     5401 59 +    141812 aatgtgctgggattacaggcatgagccaccgcgcccggGTTGGTCTTCACTTAAAAAAA
s panTro4.chr8             54946386 59 + 143986469 aacgtgctgggattacaggcatgagccaccgcgcccggGTTGGTCTTCACTTAAAAAAA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58984459 59 + 153482349 aacgtgctgggattacaggcatgagccaccgcgcccggGTTGGTCTTCACTTAAAAAAA
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8             58299153 59 + 146850525 aacctgctgggattacaggcgtgagccaccgcacccggGTTCGTCTTCACTTaaaaaaa
i macFas5.chr8             C 0 I 1
s chlSab2.chr8             53225701 59 + 139301422 aatgtgctgggattacaggcgtgagccaccgcacccgTGTTCGTCTTCACTTaaaaaaa
i chlSab2.chr8             C 0 I 102
e pteAle1.KB030580         19636586 49 -  23789964 I
e cerSim1.JH767782          7111086 46 -  14545593 I
e orcOrc1.KB316907         11141848  0 +  17242564 C
e rheMac3.chr8             61625649 411 + 150158102 I
e otoGar3.GL873541         21539628 115 -  23169006 I
e saiBol1.JH378179          2731823 47 +  10880647 I

a score=1603.000000
s hg38.chr8_KI270814v1_alt     5460 33 +    141812 A---atatatatatatatatat-tatatatatatata
s panTro4.chr8             54946445 37 + 143986469 atatatatatatacatatatatatatgtatatgtata
i panTro4.chr8             C 0 I 1
s ponAbe2.chr8             58984518 32 + 153482349 A---atatatatatatatatatatatatatatata--
i ponAbe2.chr8             C 0 I 68
s macFas5.chr8             58299213 15 + 146850525 ----aaaacaaaacaaaca------------------
i macFas5.chr8             I 1 C 0
e pteAle1.KB030580         19636586 49 -  23789964 I
e cerSim1.JH767782          7111086 46 -  14545593 I
e orcOrc1.KB316907         11141848  0 +  17242564 C
e rheMac3.chr8             61625649 411 + 150158102 I
e otoGar3.GL873541         21539628 115 -  23169006 I
e saiBol1.JH378179          2731823 47 +  10880647 I
e chlSab2.chr8             53225760 102 + 139301422 I

a score=-443.000000
s hg38.chr8_KI270814v1_alt     5493 32 +    141812 atatatatata-atatatatata-atatatat---ta
s panTro4.chr8             54946483 37 + 143986469 gtatatatatacatatatatgtatatgtatatacata
i panTro4.chr8             I 1 C 0
s macFas5.chr8             58299228 27 + 146850525 aaaaaGCTATC-ATATGC------AAGTTTCT---TT
i macFas5.chr8             C 0 C 0
e pteAle1.KB030580         19636586 49 -  23789964 I
e cerSim1.JH767782          7111086 46 -  14545593 I
e orcOrc1.KB316907         11141848  0 +  17242564 C
e rheMac3.chr8             61625649 411 + 150158102 I
e otoGar3.GL873541         21539628 115 -  23169006 I
e saiBol1.JH378179          2731823 47 +  10880647 I
e chlSab2.chr8             53225760 102 + 139301422 I
e ponAbe2.chr8             58984550 68 + 153482349 I

a score=-304.000000
s hg38.chr8_KI270814v1_alt     5525 12 +    141812 tat-tatatattt
s panTro4.chr8             54946520 13 + 143986469 tacatatatatct
i panTro4.chr8             C 0 C 0
s macFas5.chr8             58299255 13 + 146850525 TAAGTGAGAATTA
i macFas5.chr8             C 0 C 0
s saiBol1.JH378179          2731870 12 +  10880647 taa-tgtattctt
i saiBol1.JH378179         I 47 C 0
e pteAle1.KB030580         19636586 49 -  23789964 I
e cerSim1.JH767782          7111086 46 -  14545593 I
e orcOrc1.KB316907         11141848  0 +  17242564 C
e rheMac3.chr8             61625649 411 + 150158102 I
e otoGar3.GL873541         21539628 115 -  23169006 I
e chlSab2.chr8             53225760 102 + 139301422 I
e ponAbe2.chr8             58984550 68 + 153482349 I

a score=2538.000000
s hg38.chr8_KI270814v1_alt     5537 2 +    141812 at
s panTro4.chr8             54946533 2 + 143986469 at
i panTro4.chr8             C 0 I 67
s macFas5.chr8             58299268 2 + 146850525 AT
i macFas5.chr8             C 0 C 0
s saiBol1.JH378179          2731882 2 +  10880647 tt
i saiBol1.JH378179         C 0 C 0
s orcOrc1.KB316907         11141848 2 +  17242564 AT
i orcOrc1.KB316907         C 0 I 11
s loxAfr3.scaffold_20      28037536 2 -  46401353 AT
i loxAfr3.scaffold_20      N 0 C 0
s triMan1.JH594629         10385954 2 +  24341844 AT
i triMan1.JH594629         N 0 C 0
e pteAle1.KB030580         19636586 49 -  23789964 I
e cerSim1.JH767782          7111086 46 -  14545593 I
e rheMac3.chr8             61625649 411 + 150158102 I
e otoGar3.GL873541         21539628 115 -  23169006 I
e chlSab2.chr8             53225760 102 + 139301422 I
e ponAbe2.chr8             58984550 68 + 153482349 I

a score=-6257.000000
s hg38.chr8_KI270814v1_alt     5539 36 +    141812 -----tatattata--ttatatattatattatataatat--atat
s macFas5.chr8             58299270 33 + 146850525 -----T-TACTCTT--TTATTCATT----TAAATACTCTTGATTA
i macFas5.chr8             C 0 C 0
s saiBol1.JH378179          2731884 21 +  10880647 -------------------tttatt----taaatatttttGAT-A
i saiBol1.JH378179         C 0 C 0
s orcOrc1.KB316907         11141861 23 +  17242564 -----TTTATTTTC--TTATTTAGC----TATAT-----------
i orcOrc1.KB316907         I 11 I 1
s loxAfr3.scaffold_20      28037538 34 -  46401353 CAGATTACACTCTTAATTATTTATT----TAAATATCT-------
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10385956 34 +  24341844 TAGGTTACACTCTTCATTATTTATT----TAAATATCT-------
i triMan1.JH594629         C 0 C 0
e pteAle1.KB030580         19636586 49 -  23789964 I
e cerSim1.JH767782          7111086 46 -  14545593 I
e rheMac3.chr8             61625649 411 + 150158102 I
e otoGar3.GL873541         21539628 115 -  23169006 I
e chlSab2.chr8             53225760 102 + 139301422 I
e ponAbe2.chr8             58984550 68 + 153482349 I
e panTro4.chr8             54946535 67 + 143986469 I

a score=-5229.000000
s hg38.chr8_KI270814v1_alt     5575 4 +    141812 ---atta
s macFas5.chr8             58299303 4 + 146850525 ---Acag
i macFas5.chr8             C 0 C 0
s saiBol1.JH378179          2731905 4 +  10880647 ---ATag
i saiBol1.JH378179         C 0 C 0
s speTri2.JH393342          4212172 4 -   9676502 ---ACTg
i speTri2.JH393342         N 0 C 0
s orcOrc1.KB316907         11141885 3 +  17242564 ---ACA-
i orcOrc1.KB316907         I 1 I 4
s loxAfr3.scaffold_20      28037572 4 -  46401353 TTGA---
i loxAfr3.scaffold_20      C 0 I 6
s triMan1.JH594629         10385990 4 +  24341844 TTGA---
i triMan1.JH594629         C 0 I 6
e pteAle1.KB030580         19636586 49 -  23789964 I
e cerSim1.JH767782          7111086 46 -  14545593 I
e rheMac3.chr8             61625649 411 + 150158102 I
e otoGar3.GL873541         21539628 115 -  23169006 I
e chlSab2.chr8             53225760 102 + 139301422 I
e ponAbe2.chr8             58984550 68 + 153482349 I
e panTro4.chr8             54946535 67 + 143986469 I

a score=9406.000000
s hg38.chr8_KI270814v1_alt     5579 2 +    141812 ta
s panTro4.chr8             54946602 2 + 143986469 ta
i panTro4.chr8             I 67 C 0
s ponAbe2.chr8             58984618 2 + 153482349 ta
i ponAbe2.chr8             I 68 C 0
s macFas5.chr8             58299307 2 + 146850525 tg
i macFas5.chr8             C 0 C 0
s saiBol1.JH378179          2731909 2 +  10880647 ta
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21539743 2 -  23169006 TA
i otoGar3.GL873541         I 115 C 0
s speTri2.JH393342          4212176 2 -   9676502 ta
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907         11141892 2 +  17242564 tg
i orcOrc1.KB316907         I 4 C 0
s equCab2.chr15            84372377 2 +  91571448 ta
i equCab2.chr15            N 0 C 0
s cerSim1.JH767782          7111132 2 -  14545593 ta
i cerSim1.JH767782         I 46 C 0
s pteAle1.KB030580         19636635 2 -  23789964 tg
i pteAle1.KB030580         I 49 C 0
s loxAfr3.scaffold_20      28037582 2 -  46401353 tg
i loxAfr3.scaffold_20      I 6 C 0
s triMan1.JH594629         10386000 2 +  24341844 tg
i triMan1.JH594629         I 6 C 0
e rheMac3.chr8             61625649 411 + 150158102 I
e chlSab2.chr8             53225760 102 + 139301422 I

a score=506014.000000
s hg38.chr8_KI270814v1_alt     5581 109 +    141812 taGGgtaatggaatagagcttaaac-tgtgaagtcagacagacctgtattccactgtgagtgtgttggtgttagtggctgtatgactttgcacatgttatgtagcgcctc
s panTro4.chr8             54946604 108 + 143986469 tagggtaatggaatagagcttaaac-tgtgaagtcagacagacctgtattccactgtgagtgtgttggt-ctagtggctgtatgactttgcacatgttatgtagcgcctc
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58984620 108 + 153482349 tagggtaatggaatagagcttaaac-tgtgaagtcagacagacctgtattccactgtgagtgtgttggt-ctagtggctgtatgactttgcatatgttatgtagcgcctc
i ponAbe2.chr8             C 0 C 0
s rheMac3.chr8             61626060 108 + 150158102 tagggtaatggaatagagcttaaac-tgtgaagtcagacagacctgtattccactgtgagtgtttttgt-ctagtggctgtatgactttgcacatcttatgtagcccatc
i rheMac3.chr8             I 411 C 0
s macFas5.chr8             58299309 108 + 146850525 tagggtaatggaatagagcttaaac-tgtgaagtcagacagacctgtattccactgtgagtgtttttgt-ctagtggctgtatgactttgcacatcttatgtagcccatc
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53225862 108 + 139301422 tagggtaatggaatagagcttaaac-tgtgaagtcagacagacctgtattccactgtgagtgtgttcgt-ctagtggctgtacgactttgcacatcttatgtagcccctc
i chlSab2.chr8             I 102 C 0
s saiBol1.JH378179          2731911  92 +  10880647 taggataatggaatagagcttaaac-tgtgaagtcagatggacctgtattccagtgtg-----------------ggctatatgactttgcatgtgtcatttagccctga
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21539745  91 -  23169006 CAGGGTCAtggaatagagcctggag-tctgaagtcaggt----ctggaccccacc----------tggg-ctcctcgctct-tggttttgca--tgttattcaacccttc
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4212178 104 -   9676502 tagggtaatgaaatgaagcttagac-tttgaagtcagatagacccga--taaggtctgggggccttg---cctgtagcggtctgactttggacttgttatttgacccctg
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907         11141894 103 +  17242564 tagagtaacagactggagcttagac-tctgaatccaggcagacctgggttccactctgggtgcctcggc---ggcagccgtgtgac--taaacatgttattc-agcctct
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84372379 108 +  91571448 ttgggtaatggaatagagcgtaacc-tctgaagtcagacagacccggatcccaccctgggtgccttggc-ctggtagctgtgtgactttggacatattatgcaacccttc
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7111134 108 -  14545593 cagggtaatggaatagagcttagcc-tctgaagtcagacagacctggattccaccctgggtgtcttggc-ctggtaactgtgtgactttggacatattattcaacccttc
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19636637 104 -  23789964 tcaggtaa-ggaacagagcttagcc-tctgcagtcagacaaacct-gattccactct-ggtgccttggc-ctggtggccgtgtgacactggatgtgtcacgc-accgctc
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20      28037584 109 -  46401353 taaggtaatgggaaacagcttagacttctgaagtgagacagaaatggaatccagcctgagtgccttgcc-ctgctagctgtgtgactttgaatatgtcagttaactgctc
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10386002 108 +  24341844 tagggtagtggaaaacagcttaaac-tctgaagtcagacagacctggaatccagcctgagtgccttgcc-ctgctagcggtgtgactttgaatatgtcatttaactgctt
i triMan1.JH594629         C 0 C 0

a score=267812.000000
s hg38.chr8_KI270814v1_alt     5690 56 +    141812 ttagcttca---------tc--------tgtgaag----taaaactagtgata------------actgtgaggactgaaatccactaa
s panTro4.chr8             54946712 56 + 143986469 ttagcttca---------tc--------tgtgaag----tagaactggtgata------------actGTGAGGACTGAAATCCACTAA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58984728 56 + 153482349 ttagcttca---------tc--------tgtgaag----tagaactgatgata------------actGTGAGGACTGAAATCCACTGA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48076618 56 + 100215132 TTAGCTTCA---------TC--------TGTGAAG----TAGAACTGATGATA------------ACTGTGAGGACTGAAATCCACTAA
i nomLeu3.chr16            N 0 C 0
s rheMac3.chr8             61626168 56 + 150158102 ttagcttca---------tc--------tgtgaaa----cagaactgatgata------------actGTGAGGACTGGAATCCACTAA
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58299417 56 + 146850525 ttagcttca---------tc--------tgtgaaa----cagaactgatgata------------actGTGAGGACTGGAATCCACTAA
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53225970 56 + 139301422 ttagcttca---------tc--------tgtgaaa----tagaactgatgata------------actGTGAGGACTGGCATCCACTAA
i chlSab2.chr8             C 0 C 0
s saiBol1.JH378179          2732003 56 +  10880647 ttagcttca---------tc--------tgtgaaa----cagaactgatgata------------actgTGAGGACTAAAATCCATAAA
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21539836 60 -  23169006 ttagcttca---------cc--------ttctgcatcGCTGGAACCAGTGATT------------TCTGTGAATCCTAAAATCTATAAA
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4212282 64 -   9676502 ttagcttca---------cttgcttctgtgtaaag----tgCAGTAAGTGATT------------ATTCTGAGCACTAAAAGCCAAGGT
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907         11141997 65 +  17242564 ttagcatcacttttctcacc--------tgtaaaa----tggaaccagtgatg------------gttgtgatgactaaaagatgtaat
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84372487 65 +  91571448 ttagcttcactcttttattt--------tgtaaga----tggaactaatgatt------------actgtggggaccaaaagacgtaat
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7111242 65 -  14545593 ttagcttcactttttccacc--------tgtaaaa----tggaaccaatgatt------------attgtggggaccaaaggatgtaat
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19636741 65 -  23789964 ctggcttcactttccttatc--------tgtaaag----tggagCCAGAGATC------------GCAGTGAGGACCAGCAGACAGAAT
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20      28037693 77 -  46401353 ttagcatcacatttctcttc--------tgtaaaa----tggcaccaagtgtagtttcataggatatcgtgaggactaaaagaggtaat
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10386110 77 +  24341844 ttagtgtcacagttctcatc--------tgtaaaa----tggcactaagtatagtttagtaggatattgtgaggactaaaagaggtagt
i triMan1.JH594629         C 0 C 0

a score=78901.000000
s hg38.chr8_KI270814v1_alt     5746 10 +    141812 actacaggaa
s panTro4.chr8             54946768 10 + 143986469 ACTACAGGAA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58984784 10 + 153482349 ACTACAGGAA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48076674 10 + 100215132 ACTACAGGAA
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61626224 10 + 150158102 ACTACAGGAA
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58299473 10 + 146850525 ACTACAGGAA
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53226026 10 + 139301422 ACTACAGGAA
i chlSab2.chr8             C 0 C 0
s saiBol1.JH378179          2732059 10 +  10880647 ACTACAGAAT
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21539896 10 -  23169006 ACTATAGAAA
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4212346 10 -   9676502 GCTACAGCAG
i speTri2.JH393342         C 0 I 213
s orcOrc1.KB316907         11142062 10 +  17242564 acttcagaaa
i orcOrc1.KB316907         C 0 I 1
s equCab2.chr15            84372552 10 +  91571448 actacagata
i equCab2.chr15            C 0 I 1
s cerSim1.JH767782          7111307 10 -  14545593 actacagtta
i cerSim1.JH767782         C 0 I 1
s pteAle1.KB030580         19636806 10 -  23789964 ACTACGGACA
i pteAle1.KB030580         C 0 I 1
s loxAfr3.scaffold_20      28037770 10 -  46401353 aatatagaaa
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10386187 10 +  24341844 aatacagaag
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436          1551935 10 -   2788317 attacagaaa
i dasNov3.JH567436         N 0 C 0

a score=272531.000000
s hg38.chr8_KI270814v1_alt     5756 69 +    141812 gtc----catgacacaaaa-gctag-tcattgtGAACGTGGAAAGTTG-CTCAGGGTCC-----------------GTCGTCTGTTAATACCA
s panTro4.chr8             54946778 69 + 143986469 GTC----CATGACACAAAA-GCTAG-TCATTGTGGACGTGGAAAGTTG-CTCAGGGTCA-----------------GTCGTCTGTTAATACCA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58984794 68 + 153482349 GTC----CGTGACACAAAA-GCGAG-TCATT-TTAACGTGGAAAGTTG-CTCAGGGTCA-----------------GTTGTCTGTTAATACCA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48076684 69 + 100215132 GTC----CATGACACAAAA-GCTAG-TCATTGTGAACGTGGAAAGTTG-CTCAAGGTCA-----------------GTCGTCTGTTAATACCG
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61626234 69 + 150158102 GTC----CGTGACACAAAA-GCTAG-TCATTGTGAACACCGAAAGTTA-CTCAGAGTCA-----------------GTCGTCTCTTAATACCG
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58299483 69 + 146850525 GTC----CGTGACACAAAA-GCTAG-TCATTGTGAACACCGAAAGTTA-CTCAGAGTCA-----------------GTCGTCTCTTAATACCG
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53226036 67 + 139301422 GTC----CGTGACACAAAA-GCTAG-TCATTGTGAACACGGAAAGTTA-CTC--AGTCA-----------------GTTGTCTCTTAATACCG
i chlSab2.chr8             C 0 C 0
s saiBol1.JH378179          2732069 63 +  10880647 GCA----CATGGCACAAAA-GCTAG-TCATTGTGAACATAGAACGTTA-CTCAGGGTCC-----------------GTCATCTGTT------G
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21539906 51 -  23169006 G------CATAGCATGGTG-ACTTG-CTATTGTGAGCAAGGAAAATCA-CCCAGGGTTA---------------------------------A
i otoGar3.GL873541         C 0 C 0
s orcOrc1.KB316907         11142073 87 +  17242564 ggg----ctcagcacagtagccagc-tcctcgtgagcAGGGAGGGTTA-CTCAGGGTCAAGACCGTTATTGTGACTGTGGTCTGTTGGTACCA
i orcOrc1.KB316907         I 1 C 0
s equCab2.chr15            84372563 86 +  91571448 gag----cttagcacaatc-ccagc-tcattgtaagcCTGGAAAGTTA-CTCAGGGTCAAGACCATTATCATCATTGTTGTCCATCATTACCG
i equCab2.chr15            I 1 C 0
s cerSim1.JH767782          7111318 86 -  14545593 gag----cttagcacaata-ccAGC-TGCTTGTAAGCCTGGCAAGTTA-CTCAGGATCAAGACCATTATCATCATTATCGTCCGTCATTTCCG
i cerSim1.JH767782         I 1 C 0
s pteAle1.KB030580         19636817 87 -  23789964 GGGCTGACTTAGCACAACA-GCAGC-TCACTATGGGCGTGGAAGGTTA-CACGAGGTCAAGACCACTGTTATCATG---GTCCGTCATTACCA
i pteAle1.KB030580         I 1 C 0
s loxAfr3.scaffold_20      28037780 87 -  46401353 gag----cttaacacaata-gctagctcattgtgagcactgaaAGTTA-TTCAAGATCAAGACCATTGCAATTATTATCATTTGTCATCAGCA
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10386197 87 +  24341844 gag----cttagcacaata-gctagctcattgtgagcactgaaAGTTA-TTCAAGGTCAAGACCATTGCAGTTATTATCATTTGTCATCAGCA
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436          1551945 88 -   2788317 gag----ctcagaagaata-gccagctcATTTTGAGCATTGAAAGTTAGCTCAGGATTATGACCGTTATCATTAGTATTATCTGGCATCACCA
i dasNov3.JH567436         C 0 C 0
e speTri2.JH393342          4212356 213 -   9676502 I

a score=730725.000000
s hg38.chr8_KI270814v1_alt     5825 125 +    141812 TCATCCAGT---TGGT----AATTCAGATTGGAAATT-----------------------------------------TTTG----tgttt---tagtctccttttt-ag----------------------------------------------------------------------------------catttat-catacaatgctgaaata-------------------------------------------acctatt------tatgtctttttctctagacgggaagctctctg------agggtaga
s panTro4.chr8             54946847 125 + 143986469 TCATCCAAT---TGCT----AATTCAGATTGGAAATT-----------------------------------------TTTG----tgttt---tagtctctttttt-ag----------------------------------------------------------------------------------catttat-catacaatgttgaaata-------------------------------------------acgtatt------tatgtctttttctctagacgggaagctctctg------agggtaga
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58984862 125 + 153482349 TCATCCAGT---TGGT----AGTTCAGATTGGAAATT-----------------------------------------TTTG----tgttt---tagtctctttttt-ag----------------------------------------------------------------------------------cgtttat-catgcaatgttgaaata-------------------------------------------acttatt------tatgtttttttctctagacgggaagctctctg------agggtaga
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48076753 125 + 100215132 TCATCCAGT---TGGT----AATTCAGATTAGAAATT-----------------------------------------TTTG----TGTTT---TAGTCTCTTtttt-ag----------------------------------------------------------------------------------cgtttat-catacaatgttgaaata-------------------------------------------acctatt------tatgtctttttctctagactggaagctctctg------agggtaga
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61626303 121 + 150158102 TCATCCAGT---TGGT----AATTTAGATTGGAAATT-----------------------------------------TTTG----TGTTT---TAGTCTCTTtttt-ag----------------------------------------------------------------------------------catttat-catgcaatattgaagta-------------------------------------------acctatt------tatatctt----tctagatgggaagctctctg------agggtaga
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58299552 121 + 146850525 TCATCCAGT---TGGT----AATTTAGATTGGAAATT-----------------------------------------TTTG----TGTTT---TAGTCTCTTTTTT-AG----------------------------------------------------------------------------------CATTTAT-CATGCAATATTGAAGTA-------------------------------------------ACCTATT------TATATCTT----Tctagatgggaagctctctg------ggggtaga
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53226103 121 + 139301422 TCATCCAGT---TGGT----AATTTAGATTGGAAGTT-----------------------------------------TTTG----TGTTT---TAGTCTCTTtttt-ag----------------------------------------------------------------------------------catttat-catgcaatattgaagta-------------------------------------------acctatt------tatatctt----tctagatgggaagctctctg------agggtaga
i chlSab2.chr8             C 0 C 0
s saiBol1.JH378179          2732132 123 +  10880647 TCACCCAGT---TGGT----AATTCAGTTTGGAAATT-----------------------------------------TTTG----TGTTT---TAGTCTCTTTTTT-AG----------------------------------------------------------------------------------TGTGTAT-CATGCAATATTGAAGTA-------------------------------------------ACCTATT------TAtgtttttctctctagtctggaaa--ttctg------agggtaga
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21539957 298 -  23169006 TCATCTAGT---TGGT----GATCCAGAGTAGAAATTTTATGTAGAGTTCATTATACAGTGTTGAAGTGACCTGTGTATTTG----TGTCT---TTCTCTCTTTATT-GGAAGCTGAGGACAGAAACTGTGCTTAGTTGAATAACTAAAAAATATATAAATTTTCAAATTtatatatatattcaaatatatatatttatacatattatatatatataatatatatattttgtatattatatatataacattattttatatatatata------tatatttttttttttgagacagcttcactctgttgcttagggtgga
i otoGar3.GL873541         C 0 I 238
s speTri2.JH393342          4212569 137 -   9676502 CCATCTAGT---TGGT----GATCCAGATTGGAAATT-----------------------------------------TTTG----TGCTTATCCAATTTCTTTGTt-ag----------------------------------------------------------------------------------tgtttat-catacagtattggagtagtgttcttg----------------------------------ttttatt------tgtgtgtttctctctagactggaagctctctg------aggccaga
i speTri2.JH393342         I 213 I 2
s orcOrc1.KB316907         11142160 117 +  17242564 TTGTCCAGT---CGGT----GGTCCAGATTAGAAATG-----------------------------------------TTTA----TGTTTATCCAATCTCTTCCTC-------------------------------------------------------------------------------------AGTTTAT-CATACAGTATTAAAg----------------------------------------------------------tatgtctttctctctagactggaaggtctctg------aagacaga
i orcOrc1.KB316907         C 0 I 2
s equCab2.chr15            84372649 132 +  91571448 TCATCCACT---TGAT----GGTCCAGATTAGAAATT-----------------------------------------TTTA----TGTTTATCATACCTCTTTGTTAAA----------------------------------------------------------------------------------TGTTtac-catacagtgttaaagta-------------------------------------------atctatttatt--tctgtctttct-tccagactggaagctctctg------aggacaga
i equCab2.chr15            C 0 I 2
s cerSim1.JH767782          7111404 133 -  14545593 TCATCCACT---TGGT----GGTCCAGATTAGAAATT-----------------------------------------TT------TGTTTATCTCATctctttttttag----------------------------------------------------------------------------------tgtttat-catacagtattaaagta-------------------------------------------atctgttgatttgtgtgtctttctctccagactggaagctctttg------aggacaga
i cerSim1.JH767782         C 0 I 2
s pteAle1.KB030580         19636904 137 -  23789964 TCGTCCAGTTGGTGGT----GGTCCAGACTAGAAATG-----------------------------------------TTTA----TGTTGGCCCCatttctttttt-ag----------------------------------------------------------------------------------tgtttat-catgcagtattaaagca-------------------------------------------gtccatttatttgtacgtctttctccctagattagaagcactctg------aggacaga
i pteAle1.KB030580         C 0 I 2
s loxAfr3.scaffold_20      28037867 129 -  46401353 TCATCCAGT---TAGT----TGTCCAGATTGGAAATT-----------------------------------------TTTG----TGTTTATCCAATCCCT------GG----------------------------------------------------------------------------------TATTGAC-AACACAgtatcaaaata-------------------------------------------acctgtttatttgtgtgtctttctgtttagactggaagctctctg------aggacaga
i loxAfr3.scaffold_20      C 0 I 4
s triMan1.JH594629         10386284 128 +  24341844 TCATCCAGT---TGGT----TGTCCAGATTGGAAATT-----------------------------------------TTT-----tgtttatccaatctct------ag----------------------------------------------------------------------------------tgtttat-cacacaatatcaaaata-------------------------------------------gcctatttatttgtgtgtctttctatttagactggaagctctctg------aggacaga
i triMan1.JH594629         C 0 I 4
s dasNov3.JH567436          1552033 135 -   2788317 GTATCCAGT---TGGTCCAATTTCCAGATTGGAAATA-----------------------------------------TTTGTATTTGTTTATACAATCTTT------AT------------------------------------------------------------------------------------TTTAG-TGTTTAgtattgaagta-------------------------------------------gcttacttatttatgtgtctttttctttagatgagaaactctctg------aggacaga
i dasNov3.JH567436         C 0 I 4

a score=328906.000000
s hg38.chr8_KI270814v1_alt     5950 64 +    141812 ctgtct-tattgactcttgtatttctagtgttcagtatagtgtctttcagaaagt--agat-attcag
s panTro4.chr8             54946972 64 + 143986469 ctgtct-tattgactcttgtatttctagtgttcagtatagtgtctttcagaaagt--agat-attcag
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58984987 64 + 153482349 ctgtct-tattgactcttgtatttctagtgttcagtatagtgtctttcagaaagt--agat-attcag
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48076878 64 + 100215132 ctgtct-tattgactcttgtatttctagtgttcagtatagtgtctttcagaaagt--agac-attcag
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61626424 64 + 150158102 ctgtct-tattgactcttgtatttttagtgttcagtatagtgtctttcagaaagc--agat-attcag
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58299673 64 + 146850525 ctgtct-tattgactcttgtatttttagtgttcagtatagtgtctttcagaaagc--agat-attcag
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53226224 64 + 139301422 ctgtct-tattgactcttgtatttttagtgttcagtatagtgtctttcagaaagc--agat-gttcag
i chlSab2.chr8             C 0 C 0
s saiBol1.JH378179          2732255 65 +  10880647 ctatct-tatttactcttgtatttctagtgttcagtatagtgcctttcagaaagt--agataattcag
i saiBol1.JH378179         C 0 C 0
s speTri2.JH393342          4212708 64 -   9676502 tggtgt-catcttttcttatatttccagtgtctaccacagtggttttcagaaaat--gACA-ATTCAG
i speTri2.JH393342         I 2 I 108
s orcOrc1.KB316907         11142279 63 +  17242564 ctgtatcccctgactctt-tattcccagtggccagcactgtgcctttcagaaaat--ggac-attc-g
i orcOrc1.KB316907         I 2 C 0
s equCab2.chr15            84372783 24 +  91571448 ccttgtccgtggactc---tgttccca-----------------------------------------
i equCab2.chr15            I 2 C 0
s cerSim1.JH767782          7111539 62 -  14545593 ctgtgtccgtggactc---tatccccagggtccagtacagtgcctttcagaaagt--agac-attcag
i cerSim1.JH767782         I 2 C 0
s pteAle1.KB030580         19637043 65 -  23789964 ctgtct-catcgactctt-tattcctagtgtccagtgtggtgcctttcagaaagtacaggt-gttcag
i pteAle1.KB030580         I 2 C 0
s loxAfr3.scaffold_20      28038000 64 -  46401353 atgttt-cattgactcttgttttcccagtgcccagtatagagcttttcagaaagt--agaa-attcag
i loxAfr3.scaffold_20      I 4 C 0
s triMan1.JH594629         10386416 64 +  24341844 atgttt-cattgactcttatattcccagtgtccggtatcatgcttctcagaaagc--acaa-attcag
i triMan1.JH594629         I 4 C 0
s dasNov3.JH567436          1552172 50 -   2788317 gtgtct-gatcaactc--gttttcccagtgcc------------tttcagaaagc--agaa-attcag
i dasNov3.JH567436         I 4 C 0
e otoGar3.GL873541         21540255 238 -  23169006 I

a score=88978.000000
s hg38.chr8_KI270814v1_alt     6014 29 +    141812 taaagattacttgaataatt-----gaGATG---TTT
s panTro4.chr8             54947036 29 + 143986469 taaagattacttgaataatt-----gaGATG---TTT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58985051 31 + 153482349 taaagattacttgaataatt-----gaGATG-TTTTT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48076942 29 + 100215132 taaagattacttgaataatt-----gaGATG---TTT
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61626488 29 + 150158102 taaagattaattgaacaatt-----gaGATG---TTT
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58299737 29 + 146850525 taaagattaattgaacaatt-----gaGATG---TTT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53226288 29 + 139301422 taaagattaattgaacaatt-----gaGATG---TTT
i chlSab2.chr8             C 0 C 0
s saiBol1.JH378179          2732320 32 +  10880647 caaagattagttgaacaattgaa--GAGGTG---TTT
i saiBol1.JH378179         C 0 C 0
s speTri2.JH393342          4212880 28 -   9676502 CAATAAGTAGTTGAAAAAAT-----CAAATG---TT-
i speTri2.JH393342         I 108 C 0
s orcOrc1.KB316907         11142342 32 +  17242564 taaagatcagtggaacaatcgaa--GAGGTG---TTT
i orcOrc1.KB316907         C 0 C 0
s cerSim1.JH767782          7111601 32 -  14545593 gaaagatcggttgaaCAGTCAAA--GAGATA---CTT
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19637108 30 -  23789964 gaaagatcagttgaatgaT--GA--GAGGCC---TTT
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20      28038064 33 -  46401353 taaggatcagttgaaCCATCAGTTCAACAAG---AT-
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10386480 21 +  24341844 tcaggatcagttg------------aaCAAG---AT-
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436          1552222 32 -   2788317 taaagatcagttgaacaattg----aaGAGGTGTTT-
i dasNov3.JH567436         C 0 C 0
e equCab2.chr15            84372807  0 +  91571448 C
e otoGar3.GL873541         21540255 238 -  23169006 I

a score=743682.000000
s hg38.chr8_KI270814v1_alt     6043 100 +    141812 TTCAACCTTTGTTAAACCTGTACTCTTTTTTGCTAAAAGTAAATTTTATACCTGCCTTTAGTGTTACTTGAAGTTTAAAATAAAGTAAAAGGTGGTATCT
s panTro4.chr8             54947065  97 + 143986469 TTCAACCTTTGTTAAACCTGTACTCTTTTTTGCTAAAAGTAAATTTTATACCTGCCTTT---GTTACTTGAAGTTTAAAATAAAGTAAAAGGTGGTATCT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58985082 100 + 153482349 TTCAACCTTTGTTAAACCTGTACTCTTTTTTGCTAAACGTAAATTTTATACCTGCCTTTAGTGTTACTTGAAGTTTAAAATAAAGTAAAAGGTGGTATCT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48076971  99 + 100215132 TTCAACCTTTGTTAAACCTGTACTCTTTTTTGCTAAAAGTAAATTTTATACCTGCCTTTAGTGTTACTTGAAGTTTAAAAT-AAGTAAAAGGTGGTATCT
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61626517 100 + 150158102 TTCAACCTTTGTTAAATCTGTACTCTCTTTTGCTAAAAATAAATTTTATACCTGCCTTTAGTGTTACTTGAAGTTTAAGATAAAGTAAAAGGTGCTATCT
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58299766 100 + 146850525 TTCAACCTTTGTTAAATCTGTACTCTCTTTTGCTAAAAATAAATTTTATACCTGCCTTTAGTGTTACTTGAAGTTTAAGATAAAGTAAAAGGTGCTATCT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53226317 100 + 139301422 TTTAACCTTTGTTAAACCTGTACTCTCTTTTGCTAAAAATAAATTTTATACCTGCCTTTAGTGTTACTTGAAGTTTAAGATAAAGTAAAAGCTGGTATCT
i chlSab2.chr8             C 0 C 0
s saiBol1.JH378179          2732352  99 +  10880647 TTCAACCTTTGTTAAACCTGTACTATTTTCTACTAAAAATAAACCTTATACCTGCCTTTAGTGTGACTTGAAATTTAAGGT-AAGTAAAAGGTGACATCT
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21540493  99 -  23169006 TTCAACCTTTTTCAATCCTGTGCTCTTTTTGCCAGAAAACAAAGTTTATATCTGTCTTTAGTATGATTTTAAACTCCAACT-AAGTAAAGTGCAATCACC
i otoGar3.GL873541         I 238 C 0
s speTri2.JH393342          4212908  91 -   9676502 TTCAGCCTTTTTAAAACTTGTGCTCTATT-------AAATAAA-TTTATGTCTATCTTTAGTGTGATTTGAAATTCAAAAT-AAATAACATGTGTTAGTT
i speTri2.JH393342         C 0 I 379
s orcOrc1.KB316907         11142374  94 +  17242564 CTCAACCTTTTTAAAAC-----TCTTTTTTTGCTAAAAATAAATTTTTTACCTGCCTTTTGTGTGATTTGAAATTCAACAT-ATGTAAAATGTGATATCT
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84372807  80 +  91571448 -------------------gtgctcTTTTTTGCTAAAAATAAATTTTATACCTGCCTTTAGTGTGATTTGAAACTCAAAAT-AAGTAAAATGTGATATCT
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7111633  98 -  14545593 CTCAACCTTTTTAGACT-TGTGTTCTTTTTTGCTAAAAATAAATTTTATGCCTGCCTTTAGTGTGATTTGAAACTCAAAAT-AAGTAAAATGTGGTATCT
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19637138  97 -  23789964 CTCAACCTTTTAGAAAC--ATGCTCTTATATACTAACAATAAATTTTATACTTGCCTTTAGTGCGATTTGAAGTTCAAAAT-AGGTAAAATGTGATATCT
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20      28038097  98 -  46401353 CCCGGC-CTTTTAAAACACGTTCTCTTTTTTGCTAAAAAGAAATTTTATACCTATCTTTAGGGTGGTTTGAAATTCAAAAT-AAGTAAAATGTTATATCT
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10386501  99 +  24341844 CCCAACTTTTTTAAAACGTGTGCTCTTTTTTGCTAAAAATAAATTTTTTACCTACCTTTAGGGTGATTTGAAATTCAAAAT-AAGTAAAACGTTACATCT
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436          1552254  99 -   2788317 CTCAACCTTTTAAAAATTTGTGCTTCTTTTTGAGAAAAATAAATTTTATACCTGCCTTTACTGTGATTTGAAATTGAAAAT-AAGTAAAATGTGTTAGGT
i dasNov3.JH567436         C 0 C 0

a score=1410428.000000
s hg38.chr8_KI270814v1_alt     6143 243 +    141812 AAAAACAAGCTG-ATGTTTTGTAATAAAGCACTATCTCATTTTCAAAGTGCTTATTAAATAACTTAAAAGATTATGATGCATAGCCCATGGGGTT-TCATTCTACCTGACTCCATTCCTTGGAGAATCAGCCAGTGGATAAATTGCCCGGAA----ACAACGTTGAGTTTTGATGTCAGTTAGGATACTGA-CTA-------GACCTTAGG------TTTCCT-CAACTCGGAAATGATGAAAGTTGA---------ATTATAATAGACTTTT
s panTro4.chr8             54947162 249 + 143986469 AAAAACAAGCTG-ATGTTTTCTAATAAAGCACTGTCTCATTTTCAAAGTGCTTATTAAATAACTTAAAAGATTATGATGCATAGCCCATGGGGTT-TCATTCTACCTGACTGCATTCCTTGGAGAATCAGCCAGTGGATAAATTGCCCGGAA----ACAACGTTGAGTTTTGATGTCAGTTAGGATACTGA-CTA-ATATATGACCTTAGG------TTTCCT-CACCTTGGAAATGATAAAAATTGA---------CTTATAATAGACTTTT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58985182 250 + 153482349 AAAAACAAGCTG-ATGTTTTGTAATAAAGCATTGTCTCATTTTCAAAGTGCTTATTAAATAACTTAAAAGATTATGATGCATAGCCCATGGGGTT-TCATTCTACCTGACTCCATTCCTTGGAGAATCAGCCAGTGGATAAATTGCCCGGAA----ACAACGTTGAGTTTTGATGTCAGTTAGGATACTGA-CTAGATATATGACCTTAGG------TTTCCT-CAACTCAGAAATGATGAAAGTTGA---------ATTATAATAGGCTTTT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48077070 250 + 100215132 AAAAACAAGCTG-ATGTTTTGTAATAAAGTATTGTCTCATTTTCAAAGTGCTTATTAAATAACTTAAAAGATTGTGATGCATAGCCCGTGGGGTT-TCATTCTGCCTGACTCCATTCCTTGGAGAAAAGACCAGTGGATAAATTGCCCGGAA----ACAATGTTGAGTTTTGATGTCAGTTAGGATACCGA-CTAGATATATGACCTTAGG------TTTCCT-CAACTCGGAAATGATGAAAGTTGA---------ATTATAATAGACTTTT
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61626617 250 + 150158102 AAAAACAAACTG-ATGTTTTGTGATAAAGCAGTGTCTCATTTTCAAAGTGCTCGTTAAATAACTTAAAAGATTATGATGCATAGCTCATGGGGTT-TCATTCTACCTGACTCCATTCCTTGGAGAATCATCCAGTGGATAAATTGCCCAGAA----ACAACTTTGAGTTTTGATGTCAATTAGGATACTGA-CTAGATATATgaccttagg------tttcct-caactctgaaatgatgaaagttga---------attataatagactttt
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58299866 250 + 146850525 AAAAACAAACTG-ATGTTTTGTGATAAAGCAGTGTCTCATTTTCAAAGTGCTCGTTAAATAACTTAAAAGATTATGATGCATAGCTCATGGGGTT-TCATTTTACCTGACTCCATTCCTTGGAGAATCATCCAGTGGATAAATTGCCCAGAA----ACAACTTTGAGTTTTGATGTCAATTAGGATACTGA-CTAGATATATGACCTTAGG------TTTCCT-CAACTCTGAAATGATGAAAGTTGA---------ATTATAATAGACTTTT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53226417 245 + 139301422 AAAAACAAACTG-ATGTTTTGTGATAAAGCATTGTCTCATTTTCAAAGTGCTTGTTAAATAACTTAAAAGATTATGATGCATAGCTCATGGGGTT-TCATTCTACCTGACTCCATTCCTTGGAGAATCATCCAGTGGATAAATTGCCCAGAA----ACAACTTTGAGTTTTGATGTCAGTTAGGATACTGA-CTAGATATATGACCTTAGG------TTTC------CTCTGAAATGATGAAAGTTGA---------ATTATAATAGACTTTT
i chlSab2.chr8             C 0 C 0
s saiBol1.JH378179          2732451 250 +  10880647 AAAGACAAACTG-ATGTTTTGTGATACAGCATTGTTTTATTTTCAAAGTGCTTATTCAATAGCTTAAAAGATTATGATGCATAGCCAGTGGGGTT-TCATTCTACCTGATTCCATTCCTTGGAGAATCAGCCAGTGGATAAATTGCCCAGAA----ACAACTTTGAGTCTTGCTATCAGTTAGGATACTGA-CTAGACATACGACCTTAAG------TTTCCT-CAACTCTGAAATGATGAAATCTGG---------ATTATAATAGACTTTT
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21540592 227 -  23169006 AAAAACAAAGTG-ACGTTTTGCAATAACACGTTCTCTTATTCTCAAAGTGC----TAAGTAGCTTA--------TGATTCACAGACCTTGGAGTTCTCTTTTCACCCCCTTCCATCTCTTGAAGAGTCAACCAGTGGATATATTACCCAG-A----ACAAC-TTGAGTTTTAATGTC----AGAGTACTGA-CTAGGTATATGACTTTAGT------TT-------ACTTTGAAATGGTGAGGATTAG---------ATTATAAAAGACCTTT
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4213378 222 -   9676502 aaaaataaatta-aaaTTTGGGGAGAAAGCAT----TTATTTTCAAAGTGCTCAC---ACAGCTGAAAAGATTATGATGC----------------ACATTCTACCTCAACCCGCCCCTTGAAGAATCAACCAGTGGACAGGTTGGCCAGAG----ATAAC-ACAAGTTTTCTTGTTGACTAGAATACCAG-CTT--------------AG------TTTCCT-TAACTCTGAAATTATGAGGGTTGGTTAGAGAGCATCTTAAAATTCTTTT
i speTri2.JH393342         I 379 I 20
s orcOrc1.KB316907         11142468 228 +  17242564 AAAAACAAACTG-AAGTTTGGGGATAAAGGATTGTTTTGT-----------------------TTGAAAGATTGTGATACACAGTCCATGGGTTT-CCACTCCAGCT-----CACCCTGTGAAGAGTCAGCCAGTGGATCAGTTGCCCAGGAGGAAACAAC-TTGAGTCTCAATGTCACTTAGGGTACTAA-CTGGGTATATGc---taggactttgtttcct-caactctaaaatgatgagggctgg---------attataataaacttct
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84372887 210 +  91571448 AAAAACAAACTG-AAG-TTTGGGATAGAGGATTCTTTTGTTTTCAGAGTACT---TAGGCAGCTTGAAAGATGATGGTACACAATCCTTGGGGTT-CCACTTCACCC-----CACCTCTTGAAGAATCAGCCAGTGGATAAATTGCCCAGAA-------------AGTCTTAAAGTCTGTCAGG-------------CATATGA----------------CCT-CAACTCTAAAATAATGAGGGTTGC---------ATTTTAATAGACTTTT
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7111731 237 -  14545593 AAAAACAAACTG-AAG-TTTGGGATAAAGGATTGTTTTGTTTTCAAAGTGCT---TAGGCAGCTTGAAAGAGGATGGTACATGGTCCATGGGGTT-CCACTCCACCC-----CACCCCTTGAAGAATCAGCCAGTGGATAAATTGCCCAGAA-------------AGTCTTAATGTCTGTCAGGGTACTCA-CTAGATTTATGACCTTAGGA-TATAGttcct-caactctaaaatgatgaaggttgg---------attgtaatagactttt
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19637235 228 -  23789964 AAAAACAAACTA-AAGTTTTGGAATAAAGGACTGTTTTGTTCTCAGAGTACT---TAGGCATCTTGAAAGATTATAACACATAATTCATCAGGTT-C-----CACCT-----CACCCCTTGAAGAATCAGCTAATGGACACGTTGCCCAGAAAGAAACAAC-TTTAGTTTCAATGTCAGTCAGGATACCAG------CTTttag-------------tttctt-caactctaaaatgactagggttgg---------attataatagactttt
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20      28038195 219 -  46401353 AAAAACAAACTA-AACTTTTGGGACAAAGAGTTGTTTTGTTTTCAAAGTGCT---TAAGCAGCTCGAAAGATTATGAT--ATAGGTTTTGGGGTT-CTACCTTATCC----CC--------------CTTCCAGTGAGTAAACTGTCCAGAA----ACAAC-TTGAGTTTTAATGTCCATTGGAGTACTAA-GTAGGTATTTAATCTTAGAATTTAG----------CTCTGAGATGATGAGGGTTGG---------ATTATAATAAG----T
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10386600 234 +  24341844 AAAAATAAACTA-AACTTTTGGGACAAGGAGTTGTTTTGTTTTTAGAGTTCT---TAAGCAGCTTGAAAGATTATGATACATAGGTCATGAGGTT-CTACCCTGTCC----CC--------------CTGCAAGTGAGTAAACTGCCCAGAA----ACAac-ttgggttttaatgtcagttagggtactaa-ttaggtatatgaccttagaatttagtttcct-atcctctaaaatgatgagggttgg---------agtataatagatcttt
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436          1552353 213 -   2788317 GAAAACAAACTACAAGTTTTGGGATAAAAGATTGATTT----------------------AGCTTGAAA------------------ATGAGATT-CCACTCCACCC----CCACCCATTGAAGGATCAGCCAATGGATAAATCACCCAGAA----ACAAC-TAAGGTTTTAATATCAGTTAGGTTACTAACTTTGATATATGACCTTAAGACTTTGTTTCCTCAAACTCTAAAATGGTGA-GGTTGG---------GTTATAGCAGAATTTT
i dasNov3.JH567436         C 0 I 1181

a score=32045.000000
s hg38.chr8_KI270814v1_alt     6386  9 +    141812 AAGA-----TATTA
s panTro4.chr8             54947411  9 + 143986469 AAGA-----TATTA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58985432  9 + 153482349 AAGA-----TATTA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48077320  9 + 100215132 AAGA-----TATTA
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61626867  9 + 150158102 aaga-----tactc
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58300116  9 + 146850525 AAGA-----TACTC
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53226662  9 + 139301422 AAGA-----TACTC
i chlSab2.chr8             C 0 C 0
s saiBol1.JH378179          2732701  9 +  10880647 AAGA-----CATTG
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21540819  6 -  23169006 GAGA-----TA---
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4213620 14 -   9676502 AAGAAAACttaaaa
i speTri2.JH393342         I 20 C 0
s orcOrc1.KB316907         11142696  9 +  17242564 aaga-----taccg
i orcOrc1.KB316907         C 0 I 1
s equCab2.chr15            84373097  9 +  91571448 AAGG-----TATCA
i equCab2.chr15            C 0 I 1
s cerSim1.JH767782          7111968  9 -  14545593 aaga-----tacca
i cerSim1.JH767782         C 0 I 1
s pteAle1.KB030580         19637463  9 -  23789964 aaga-----tacca
i pteAle1.KB030580         C 0 I 1
s loxAfr3.scaffold_20      28038414  8 -  46401353 AAGG-----TGTT-
i loxAfr3.scaffold_20      C 0 I 2
s triMan1.JH594629         10386834  8 +  24341844 aaga-----tatc-
i triMan1.JH594629         C 0 I 2
e dasNov3.JH567436          1552566 1181 -   2788317 I

a score=1889520.000000
s hg38.chr8_KI270814v1_alt     6395 358 +    141812 CTCTCTTTAA------------TTTTTGTCTTATTaataataattaataatacagtgcttactgcgtgccagctaacccagtcaacacttttcatgtattatgt-cttaattctgaaaaatcttta-gtgactac-tatg--tttattataggcattttaccaatgcgaacaa--------------------------------------------------gcag-agtagctcagGACAGGAAATTATGAAGAATATCACCAGCGCAATCA----TTGAGTA-GAAAA-TAACTTGATGC-TTGTCGTGGAGGTCAGT----GAAATAGAGGCGAATGCAGATTCACTCTCTACTGCTAAACTTGGATTGTTGCAGTAACA-AAGACTTACACAGAAGGAGGCTGTCCAGATATTATGCTGC---ACCCCA-AAGATGG
s panTro4.chr8             54947420 358 + 143986469 CTCTCTTTAA------------TTTTTGCCTTACTaataataattaataatagagtgcttactgcgtgtcagctaacccagtcaacacttttcatgtattatgt-cttaattctgaaaaatcttta-gtgactac-tatg--tttattacaggcattttaccaatgcgaacaa--------------------------------------------------gcag-agtagctcagGACAGGAAATTATGAAGAATATCACCAGCGCAATCA----TTGAGTA-GAAAA-TAACTTGATGC-TTGTCGTGGAGGTCAGT----GAAATAGAGGCGAATGCAGATTCACTCTCTACTGCTAAACTTGGATTGTTGCAGTAACA-AAGACTTACACAGAAGGAGGCTGTCCAGATATTATGCTGC---ACCCCA-AAGATGG
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58985441 358 + 153482349 CTCTCTTTAA------------TTTTTACCTTACTaataataattaataatagagtgcttactgtgtgccagctaacccagtcaacacttttcatgtattatgt-cttaattctgaaaaaccttta-gtgactac-tatg--tttattataggcattttaccaatgagaacaa--------------------------------------------------gcag-agtagctcagGACAGGAAATTATGAAGAATATCACCAGTGCAATCA----TTGAGTA-GAAAA-TAACTTGATGC-TTGTCGTGGAGGTCAGT----GAAATAGAGGCGAATGCAGATTCACTCTTTACTGCTAAACTTGGATTGTTGCAGTAACA-AAGATTTACACAGAAGGAGGCTGTCCAGATATTATGCTGC---ACCCTA-AAGATGG
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48077329 358 + 100215132 CTCTCTTTAA------------TTTTTACCTTACTAATAATACTTAATAatagagtgcttactgtgtgccagctaacccagtcaacacttttcatgtattatgt-cttaattctgaaaaatcttta-gtaactgc-tatg--tttattataggcattttaccaatgagaacaa--------------------------------------------------gcag-agtagctcaggacaggaaattatgaacaatatcaccagcACAATCA----TTGAGTA-GAAAA-TAGCTTGATGC-TTGTCGTGGAGGTCAGT----GAAATAGAGGGGAATGCAGATTCACTCTCTACTGCTAAACTTGGATTGTTGCAGTAACA-AAGACTTACACAGAAGGAGGCTATCCAGATATTATGCTGC---ACCTCA-AAGATGG
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61626876 358 + 150158102 ctctctctaa------------tttttaCCTTACTAATAATACTTAATAactgagtgcttactgtgtgccagctaacccagtcaacacttttcatgtattatgt-cttaattctgaaaaatctcta-gtgactac-tatg--tttattataggcattttaccaatgagaacaa--------------------------------------------------gcag-agtagctcaggacaggaaattatgaagaagatcaccagcGCAATCA----TTGAGTA-TAAAA-CAACTTGATGC-TTGTCGTGGAGGTCAGT----GAGATAGAGGCAAATGCAGATTCACTCTCTACTGCTAAACTTGGATTGTTGCAGTAACA-AACAGTTATACAGAAGGAGGCAATCCAGATATTATGCTGC---ACTCCA-AAGATGG
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58300125 358 + 146850525 CTCTCTCTAA------------TTTTTACCTTACTaataatacttaataactgagtgcttactgtgtgccagctaacccagtcaacacttttcatgtattatgt-cttaattctgaaaaatctcta-gtgactac-tatg--tttattataggcattttaccaatgagaacaa--------------------------------------------------gcag-agtagctcagGACAGGAAATTATGAAGAAGATCACCAGCGCAATCA----TTGAGTA-TAAAA-CAACTTGATGC-TTGTCGTGGAGGTCAGT----GAGATAGAGGCGAATGCAGATTCACTCTCTACTGCTAAACTTGGATTGTTGCAGTAACA-AACAGTTATACAGAAGGAGGCAATCCAGATATTATGCTGC---ACTCCA-AAGATGT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53226671 358 + 139301422 CTCTCTTTAA------------TTTTTACCTTACTaataatacttaataactgcgtgcttactgtgtgccagctaacccagtcaacacttttcatgtattatgt-cttaattctgaaaaatctcta-gtgactac-tatg--tttattataggcattttaccgatgagaacaa--------------------------------------------------gcag-agtagctcaggacaggaaattatgaagaagatcaccagcGCAATCA----TTGAGTA-TAAAA-CAACTTGATGC-TTGTCGTGAAGGTCAGT----GAGATAGAGGCGAATGCAGATTCACTCTCTACTGCTAAACTTGGATTGTTGCGGTAACA-AAGAGTTATACAGAAGGAGGCCATCCAGATATTATGCTGC---ACCCCA-AAGATGG
i chlSab2.chr8             C 0 C 0
s saiBol1.JH378179          2732710 337 +  10880647 CTCTCTTTAA-----------TTTTTTACCCTACTaataatacttaatagttgagtgcttactgtgtgccaactaaccaagtcaatgcttttcatgtatcatgt-cttaaatttgagaaatcttaaggtgactac-tatg--tttatcataggcattttaccaacgagaaCAA--------------------------------------------------GCAG-TGAATCTCAGGACAGGAAATTATGAAGAGTATCACCAGCATAGTCA----TTGAGTA-GAAAA-CAATTTGATGC-TT---GTGGAGGT------------------------CAGATTCTCTCTCGACTGCTAAACTTGGATTGTTGCAATAACA-AAGACTTATACAGAATGAGGCCGTCCAAATATTATGCTGC---ACTGCA-AAGATGG
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21540825 317 -  23169006 --CCTCCTAA------------TTTTTGCTTTTC-AGTAATGCtt-------gagcctttactgtgcatgaggtaactgagtcaacacttct--tgcattat-c-cttaa-tctgaaaaatcttaa-atggctat-taggcatttattatgctaattttgccaatgaggaCAA--------------------------------------------------GTTGCAAGAGGTCAGAGCCAGAGATCAGGAGGAATATGGCCAGTGTTGGAA----TTGAGGAGGAAAG-CAACTTGATGC-TTTCCATGGAAGTCAGT----GAAGCAGAGGTGAGTGCGGGTCCACTCT--GCTGGTACCCTCG---TGTTACAGCAGC------------CGGAAAG------------------GCTGCGTGGCCCAG-AAGATGG
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4213634 269 -   9676502 atttctttaaaattttctaatttttttactttattaataatGCTTACTAGTTGGGTGCTTTC--CCTGCCAGGTAACCCGGTCAGTGCTT-TCTTGTATTCG---CTCAGTCCTGAAAGACC-CAA-GTGGCTGTGTAGA--TCCGTTGCACCCATCTTCCTAATGAGGACAG--------------------------------------------------GCGG-AGTCG-------CAGGAAAGCACGAGGA-CGTCACAAGTGCAGTGACCATTCGAGCA-GCAG------CTGGTGC-TGGATGTGGAGGT-------------------------------GCTCTAGACAGCTGCCCATG---------------------------------------------------CGTTGC---ACT-----------
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907         11142706 347 +  17242564 cttgcttgca------------ttttTACCTCCCTAA-------TAATATttgaaaacgtactgtgtgccacataacccagccaacacttttcatgtgttatct-tttaatcctgaaaagtgctag-gtagctac-tgtgcacttattatgctcatttttctaataaggGCAA--------------------------------------------------GTAG-AGTAGCTGTGGATGGGAAATTACG-AGGAAGTCACCAGTGCTATGG----TTGAGTG-TACAGGCAACCTGATGC-TCGTTGTGGAGGCCAGT----GAAATAGAGGGCAATGCAGGTCCACTCTGTACAGATAGACTTATATTATCCCAGGAACA-AAGGCTTGTACAA-------CTGGCAGAGTGTCACATTGC---ACTCCAGAAGATCG
i orcOrc1.KB316907         I 1 C 0
s equCab2.chr15            84373107 362 +  91571448 CTATCTTGAA------------TTTTTACTTTACTaagaatacttaataattgagtgcttactgtgtaccagataacccagtcaacacttttcacgtattgtct-cttaagcctgaagaacattaa-gtggctgc-tctgtattttttatgctcatcttactaatgaggGCAA--------------------------------------------------GTGG-AGTAGTTGGGAATGGGAGGTTATGAAGAAAGTCATCTGTGCTATGA----ATGAGCG-GAAAAGCAACTTGATGC-TTGCCGTGGGAATCAGT----GAGCCGGAGGTGACTGCAGGTCTGCTCTGTACAGATGAACCTAGGTGGTCACAGTAACA-CAGGCTTGCACAACAGGAGGCTGGCCAAGCGTTATACTGC---GCCACAGAAGATGA
i equCab2.chr15            I 1 C 0
s cerSim1.JH767782          7111978 362 -  14545593 ctatcttgaa------------ttttTACTTTACCaagaatacttaataattgagtgcttactgtgtgccagataatgcagtcaacacttttcatgtcttatct-cttaatcctgaaaaacattaa-gtggctac-tatgtattttttatgctcattttactaatgaggGCAA--------------------------------------------------GTGG-AGTAGCTGCGAATGGGAAATTATGAAGAAAATCACCGGTGCTGAAA----ATGAGTA-GAAGAGCAACTTGATGC-TTGTCATGGAGATCAAT----GAGACAGAGGTGACTACAGATCAGCTCTGAACGGACAACCTTATATTATCACAGTAACA-AAGGCTTGTACAACAGGAGGCTGGCAAAGTGTTATATTAC---CCCACAAAAGATTA
i cerSim1.JH767782         I 1 C 0
s pteAle1.KB030580         19637473 330 -  23789964 cTTTCTTGAA------------TTTTTACATtaataataacacttaatagttgaatgcttactgcctgccaggtaccccagtcaacacttttcttgaattatct-ctt----ctaaAAAGTACTAA-GTGGCTAC-CGTGTATTTATTATGCTCGTTTTTCTACTGAGGGCAA--------------------------------------------------ACGG-AATAGCTGCGTATGGGAAATTATAAAGAAAATCACCAGTGCTGTCA----GGGAGCA-GAAAAGCAACTTGACTC-TTGTCACGGAGGTTGGT----GAAAC--AGGTGAACGCAGATCTGCTCTGTGTGGGTAAAC-------GTCACAATAACA-GAGGCTTA-GTACCAGGAGGCCGGCT-------------C---CCC----GAGATG-
i pteAle1.KB030580         I 1 C 0
s loxAfr3.scaffold_20      28038424 392 -  46401353 CTATTTCAAC------------CTTTTATTTTACT---------TAATAGttgaatgcttactatgc---cggtaagccgttcaacacttttcatctgttattt-cttaatcctgaaaaatcataa-gtggctaa-ta-gtatgtattagtctcattttactaatgagcacac----acct-tacagagattaagtttttgcttctggctttataactaat---tag-agtagctgagtatgggaGATTGTGAAGAGTATCACCAACAATATAA----TTGAG-A-GAAAAGTAATTTGATGC-CTGTCATGGAGGTCAGT--TACAGATAGAGATGGATGTAGATAATCTCCGTGTGGATAAACTTACATTGTTAGAAAAGTC-GAGTCTTATACAACAGGAGGCTGCCAAAACGTTATACTGC---TCCCAGAGAGATTG
i loxAfr3.scaffold_20      I 2 C 0
s triMan1.JH594629         10386844 402 +  24341844 ctatttcACC------------TTTTTATTTTACT---------TAATAGttaagtgcttactatgcattaaataatctattcaatgcttttcatctattattt-cttgatcctgaaaaggcatta-gtggctta-ta-gtatttattactcttattttactaatgagaacat---aacct-tacagaggttaattttttgcttctggctatacagctaataaatag-AGTAGCTGAGTATGGGAAATTGTGAAGAATATCACCAATGATATAA----TTGAGTA-GAAAAGCAACTTGATGC-TTCTCATGGAGGTCAGTGATACAGACAGAGGTGGATGCAGATCATCTCTGTGTGGATAAACTTGTACGGTTAGAATCATA-AAGACTTATACAACAGGAGGCTGCCAAAATGTTACACTGC---TCCCAAAAAGATTA
i triMan1.JH594629         I 2 I 220
s dasNov3.JH567436          1553747 394 -   2788317 CTATCTCAAA------------TTTTTATTTTACtaataaaacataatatttgagtgcttattgtgtaccccataacctagttaacacttttcatgtattattcgcataagcttgaaaaagctta----------------atttattaccctcattttactaaagaggacattgagacttatagagatttaaga-ttttgcttctgactacacattgaacaagtgg-AA----TGAGTATGGGAAATTATGAAGCATATCACCCGTGTCGTAA----TTGAGTA-GAAAAGCAACTTGATGCTTTGTCATGAAGGTCAGT------GAAACAGATGGATGCAGGTCAGTTCTCTGTGGATGAACTTATGTTGTTGGACTTGCCAAAGGCTTAGATGACAAGAGGCTGCCAAAATGTCATGCTGC---AAACCAGAAGATGG
i dasNov3.JH567436         I 1181 C 0

a score=178272.000000
s hg38.chr8_KI270814v1_alt     6753  84 +    141812 CCAAACCTATCATCTGAGTGGTGACACCAGAAAAAGGGGGCATCACCTTA---------------------------------------------------------------------------------------AG-------GTGAAATAAAGCACCA-------------------------------------------------------------------------AAGCATTGTTTG-----------------------AGAA
s panTro4.chr8             54947778  84 + 143986469 CCAAACCTATCATCTGAGTGGTGACACCAGAAAAAGGGGGCATCACCTTA---------------------------------------------------------------------------------------AG-------GTGAAATAAAGCACCA-------------------------------------------------------------------------AAGCATTGTTTG-----------------------AGAA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58985799  84 + 153482349 CCAAACCTATCACGTGAGTGGTGACACCAGAAAAAGGGGGCATCACCTTA---------------------------------------------------------------------------------------AG-------GTGAAATAAAGCACCA-------------------------------------------------------------------------AAGCATTGTTTG-----------------------AGAA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48077687  82 + 100215132 CCAAACATAT--TCTGAGTGGTGACACCAGAAAAAGGGGGCATCACCTTA---------------------------------------------------------------------------------------AG-------GTGAAATAAAGCACCA-------------------------------------------------------------------------AAGCATTGCTTG-----------------------AGAA
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61627234  84 + 150158102 CCAAACCTATCACCTGAGTGGCGACACCAGGAGAAGGGGGCACCACCTTA---------------------------------------------------------------------------------------AG-------GTGAAATAAAGCACCA-------------------------------------------------------------------------AAGCATTGTTTG-----------------------AGAA
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58300483  84 + 146850525 CCAAACCTATCACCTGAGTGGCGACACCAGGAGAAGGGGGCACCACCTTA---------------------------------------------------------------------------------------AG-------GTGAAATAAAGCACCA-------------------------------------------------------------------------AAGCATTGTTTG-----------------------AGAA
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53227029  81 + 139301422 CCAAACCTATCACCTGAGTGGTGACACC---AGAAGGGGGCACCACCTTA---------------------------------------------------------------------------------------AG-------GTGAAATAAAGCACCA-------------------------------------------------------------------------AAGCATTGTTTG-----------------------AGAA
i chlSab2.chr8             C 0 C 0
s saiBol1.JH378179          2733047  84 +  10880647 CCAAACCTATCACCTGAGTGGTGACACTAGGAGAAGGGGGTACCACCTTA---------------------------------------------------------------------------------------AG-------GTGAAATAAAGCATCA-------------------------------------------------------------------------AAGCACTGTTTG-----------------------AGAA
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21541142  81 -  23169006 CCGGGCATCTTATCTAAATGGTG-TGTGTGGGGGGTGGGGAGGCTCCTTG---------------------------------------------------------------------------------------AG-------GTAAA--GAGGCATCA-------------------------------------------------------------------------CCACAGTGTTTG-----------------------AGAA
i otoGar3.GL873541         C 0 I 176
s speTri2.JH393342          4213903  77 -   9676502 ---GGCAGGTCGTCAGAATGGCGATGCCAGGAGAGTGGG----CACCTGA---------------------------------------------------------------------------------------AA-------GTGACAGTGGGCAACA-------------------------------------------------------------------------TAGTGCTGCTTG-----------------------AGAA
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907         11143053  80 +  17242564 CCAAGCTTGTCATCTGAATGGCGATGCCCGGGGAGTGGG----CGTCTCA---------------------------------------------------------------------------------------AA-------GTGATAGAGGGAACCA-------------------------------------------------------------------------CTTTGCTATTTG-----------------------AAAC
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84373469  80 +  91571448 CGAAGCACGTCGTCTGAATGGTGATGCCAGGGGAGTGGG----CCTCTTA---------------------------------------------------------------------------------------AG-------GTGACGTAAGGAACGA-------------------------------------------------------------------------TGGCACTATTGG-----------------------AGAA
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7112340  80 -  14545593 CCAAGCACGTTGTCTGAACGGTGATGCCAGGGGAGTGGG----CATCTTA---------------------------------------------------------------------------------------AG-------GTGACATAAGGAACCA-------------------------------------------------------------------------TGGCACTGTTGG-----------------------AGAA
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19637803  79 -  23789964 CCAAGCGTGCCATCAGAAC-GCGGCGCGGGGGCGTTGGG----CACCTTC---------------------------------------------------------------------------------------AG-------GTGGTGTGAGGCACCG-------------------------------------------------------------------------TGGCGCTGTTTG-----------------------AGAA
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20      28038816 224 -  46401353 CCAAGCACATCATCCCAACAATGATGTTAGGCGAGTGGA----TACCTTA------AGGTGATAACaccc------------------------------------attgct----gttgagtctattctgactcaaagcaaccctatagtacagattagaacagccccatggggtttccaagaagcagctgctggactcaaactgccaaccttttggttaacagccaaactcttaaccactgtacaccagggctcctaTAAACCAACCCAGAA
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10387466 191 +  24341844 ccaaacccattgccgttgagtcgac-tccaactcataga----caccctataggacagggtagaacttccccacggagtttccaaggaagcgcctggtggattcaaattgctcacctttgggtt-------------agcagcc--atagcactta--accactatgccaccagggctccGATAGAAGGGGGATATA--------------------------------------AGGCACTGTTTG-----------------------AGAA
i triMan1.JH594629         I 220 C 0
s dasNov3.JH567436          1554141  72 -   2788317 TTAAGCACATCA--------------TCTGATTGGTGGT----C------------AGGGGA------------------------------------------------------GTCGTGTCTTG----------AG-------ATGATATAAGGGACAA-------------------------------------------------------------------------TGACACTGTTT----------------------------
i dasNov3.JH567436         C 0 C 0

a score=956826.000000
s hg38.chr8_KI270814v1_alt     6837 189 +    141812 ATAAGACCCTTAACTTCTAAACTTGGGATATGTCCCTTATGTTCCA-A-GAAATTGACTCA-TAATGAAGGAAAA---TTTTTCCTCCT-GGAGTCCTCAAAAGTG-T----TTTTTC--CTTCTTTAGGATAAGTACCTGGAATGAGTTCTCTC------TATTTAAaaagcccttaaaggtatctagcag----------------------------------------------------------------------tccttgtcagcattttc
s panTro4.chr8             54947862 189 + 143986469 ATAAGACCCTTAACTTCTAAACTTGGGATATATCCCTTATGTTCCA-A-GAAATTGACTCA-TAATGAAGGAAAA---TTTTTCCTCCT-GGAGTCCTCAAAAGTG-T----TTTTTC--CTTCTTTAAGATAAGTACCTGgaatgagttctctc------tatttaaaaagcccttaaaggtatctagaag----------------------------------------------------------------------tccttgtcagcattttc
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58985883 190 + 153482349 ATAAGACCCTTAGCTTCTAAACTTGGGATATATCCCTTATGTTCCA-A-GAAATTGACTGA-TAGCGAAGGAAAA---TTTTTCCTCCT-GGAGTCCTCAAAAGTGTT----TTTTTC--CTTCTTTAAGATAAGTGCCTGTAATGAGTTCTCTC------TATTTAAAAACCCCTTAAAGGTATCTAGCAG----------------------------------------------------------------------TCCTTGTCAGCATTTTC
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48077769 188 + 100215132 G-AAGACCCTTAGCTTCTAAACTTGGTATATATCCCTTATGTTCCA-A-GAAATTGACTCA-TAGCAAAGGAAAA---TTTTTCCTCCT-AGAGTCCTCAAAAGTG-T----TTTTTC--CTTCTTTAAGATAAGTACCTGTAATGAGTTCTCTC------TATTTAAAAAGCCCTTAAAGGTATCTAGCAG----------------------------------------------------------------------TCCTTGTCAGCATTTTC
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61627318 192 + 150158102 ATAAGACCCTTAGCTTCTAAACTTGGGATATATCCCTCATGTTCCA-A-GAACTTGACTCA-TAGCAAAGGAAAA---AGTTTCCTCCT-GGAGTCCTCAAAAATA-A----TTTTTC--CTTCTTTAAGATAAATACCTGTAATGAGTTCTGTTG---TGTATTTAAAAAGCCCTTAAAGGTATCTAGCAT----------------------------------------------------------------------TCCTTGTCAGCATGTTC
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58300567 192 + 146850525 ATAAGACCCTTAGCTTCTAAACTTGGGATATATCCCTCATGTTCCA-A-GAACTTGACTCA-TAGCAAAGGAAAA---AGTTTCCTCCT-GGAGTCCTCAAAAATA-A----TTTTTC--CTTCTTTAAGATAAATACCTGTAATGAATTCTGTTG---TGTATTTAAAAAGCCCTTAAAGGTATCTAGCAT----------------------------------------------------------------------TCCTTGTCAGCATGTTC
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53227110 192 + 139301422 ATAAGACCCTTAGCTTCTAAACTTGGGATATATCCCTCATGTTCCA-A-GAACTTGACTCA-TAGCAAAGGAAAA---ATTTTCCTCCT-GGAGTCCTCAAAAATA-A----TTTTTC--CTTCTTTAAGATAAGTACCTGTAATGAGTTCTGTTG---TCTATTTAAAAAGTCCTTAAAGGTATCTAGCAT----------------------------------------------------------------------TCCTTGTCAGCATGTTC
i chlSab2.chr8             C 0 C 0
s saiBol1.JH378179          2733131 262 +  10880647 ATAAGACCCTTAGCTTCCAAAGTTGAGATCTAGCCCTCATGTTCCA-A-GAAATTAACCTT-TAGCAAAGGAAAA---TGTTTCCTCCA-GGAGTCCTCAAAAATG-T----TTTTTC--CTTCTTTAAGATAAGTACCTGTAATGAGTTCTACTC---TCAATTTAGAAAGCCCTTAAAGGTATCTAGCAGTCCTTATCAGCattttcttttttattattattatttatttttatttttTCTTCCCACCCATGCCTCCAGCTCCTTGTCAGCATTTTC
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21541399 184 -  23169006 AAAAGATTCTTAGCTGCTCAAGTTGTCATATATTCTTCATGTTACATG-GAAATTTACTCA-TAGAAAAGGAAAA---AATTTCTTCCTCAAAGTCTTCAAAAATG-T----TTCTTT--CTCATTTAAG-----TACCTTTGATGAGTTCTTTTATTCTCAGTGTAAAAAGCCCTTAAAAGTATTTAGCTG----------------------------------------------------------------------TCCTCA--------TTC
i otoGar3.GL873541         I 176 C 0
s speTri2.JH393342          4213980 190 -   9676502 ATAAAATCATTGGCCTCAGAGTT-----TTCATGTCTTGTATTCCA-AGGAAATTTACTCA-TAGAAAAGTAAAA---C-TTTCCCCAA-AGAATACTACAGCTTA-TTTTCTTTTCT--CTTGTTTAAGATAAGTACCTTTAATGAGCTGTACTC---TCAGTTTTAAAAGCCCCTGAAAGAATCTAGCAG----------------------------------------------------------------------GCCCT-TCAACCTGTTT
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907         11143133 188 +  17242564 GTAGAACTTTTAGCTTCTA-AGTTGTCATATATCCCTCATGTTCCA-AGGAAATTTATTCAGTAGGAAAGGAAAG---ATACTTCCCCA-AGAGTCTTCAGA-----A----TCTTTT--TTCATTTGAGACATTTATCGTTAATGAGTTCTATTC---T-AATTAAtaaagcccttgcaggtgtccagcag----------------------------------------------------------------------gccacttcagcattttc
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84373549 185 +  91571448 ATAAAACTCTTAGCTTCTAAAGTTCTCATATATCCCTCGTGTTCCA-AGGAAATTTCATCA-TAGAAAAGGAAAA---GTATTTCCCCA-AGAGTCCTCAAA-----A----ATTGTT--TTTGTTTAAGACAAGTGTGTTTAATGAGTC---CTC---TCCGTCAGTCGAGCCCGTCCAAGCATCTGGCAG----------------------------------------------------------------------TCCTCTGCAGTTTTTC-
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7112420 187 -  14545593 AGACAACTCTTAGCTTCTAAAGTTGTCATATATCCCT-GTGTTCCA-AGGAAATTTAATCA-TAGAAAAGGAAAA---ATATTTCCCCA-AGAGTCCTCAAA-----A----ATTGTT--TTTGTTTAAGACAAGTATCTTTAATGAGTTCTACTC---TCCATTAATAAAGCCT-TACAAGTATCTAGCAG----------------------------------------------------------------------TCCTCTTCAGCATTTTC
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19637882 170 -  23789964 GAGAAACTCTTAGTTTCTACAGTTGTCATTTATTCCTCATCTTCCA-AGGAGATTTG--CT-TAGAAAAGAAAAA---ATATTTCCCCA-GGAGTCCTCAGAT----T----TTTGTTTGTTTGTTTAAGACAAGTATCTTTAATGAGTTCTACTC---TCAATTAATAAAGGCC------------------------------------------------------------------------------------------TCTTCAGCATTTTC
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20      28039040 182 -  46401353 GTGAAACCCTTACCTCGTAAAGATGTCATCAGTCCCTCAAGTTACA-AGGAAATTTACTTA-----AAAGGAAAAA--AATTTCCCCTA-GGAGTTCTCAGAAATG-T----TTTTTT---------AAGATAAGTATCTTCAATGAGTTCTACTC---TCAATTAGTAAATTCCTTAAA-GTATCTTGCAG----------------------------------------------------------------------TCCTCTTAAGCATTTTC
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10387657 183 +  24341844 ATGAAACTCTTATTTGCTAAAGGTGTCGTATATCCCTCGAGTTACA-AGGAGATTTACTTA-----AAAGGAAAAAACAATTTCCCCCA-GGAGTTCTCAGAAATG-T----TTTTTT-----------TCTAAGTATCTTTAATGAGTTCTACTC---TCAGTTAATAAAGTCTTTAAACGGATCTTGCAG----------------------------------------------------------------------TCCGCTTTAGCATTTTC
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436          1554213 162 -   2788317 -TGAAAATCTT-----CCAAAGTTGGTATATATCCTTCACACTACA-AGGAATTTTAGAGA-----AAAGGAAAA---ATTATTTCCCA-GGAGGCCTTAGAAATG-T----TATTTA---------AAGATAAGT------GATAAGTTCTACAC-----------TGAATCCCTTAGAAGTATCTAGCAG----------------------------------------------------------------------TCCTTGTCAGCATTTTC
i dasNov3.JH567436         C 0 C 0

a score=821360.000000
s hg38.chr8_KI270814v1_alt     7026 168 +    141812 acata---------------------------------------------------------agGGCTGTTGGTGAACTGATAGTGTTGGCAATAAATAGAAAGTGGATCATTAGTTT--TGAAAAGTGTACTTTAA-----CTCTG----TGTTTTAAGCTGTCTTTTGTTTCCATTTATACTCATTTAGGTTATT-CTGCTTCCTCAAAGCCCTCTGAT--T----A--ATAGTACTCCAGGC
s panTro4.chr8             54948051 168 + 143986469 acata---------------------------------------------------------agGGCTGTTGGTGAACTGATAGTGTTGGCAATAAATAGAAGGTGGATCATTAGTTT--TGAAAAGTGTACTTTAA-----CTCTG----TGTTTTAAGCTGTCTTTTGTTTCCATTTATACTCACTTAGGTTATT-CTGCTTCCTCAAAGCCCTCTGAT--T----A--ATAGTACTCCAGGC
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58986073 168 + 153482349 ACGTA---------------------------------------------------------AGGGCTGTTGGTGAACTGATAGTGTTGACAATAAATAGAAGGTGGATCATTAGTTT--TGAAAAGTGTACTCTAA-----CTCTG----TGTTTTAAGCTGTCTTTTGTTTCCATTTGTACTCATTTAGGTTATT-CTGCTTCCTCAAAGCCCTCTGAT--T----A--GTAGTACTCCAGGC
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48077957 168 + 100215132 ACATA---------------------------------------------------------AGGGCTGTTGGTGAACTGATAGTGTTGGCAATAAATAGAAGGTGGATCATTAGTTT--TGAAAAGTGTACTTTAA-----CTCTG----TGTTTTAAGCTGTCTTTTGTTTCCATTTATACTCATTTAGGTTTTT-CTGCTTCCTCAAAGCCCTCTGAT--T----A--ATAGTACTCTAGGC
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61627510 168 + 150158102 ACATA---------------------------------------------------------AGGGCTGTCGGTGAACTGATAGTGTTGGCAGTAAATAGAAGGTGGATCATTAGTTT--TGAAAAGTGTATTTTAA-----CTCTG----TGTTTTCAGCTGTCTTTTGTTTCCATTTATACTCATTTAGATTTTT-CTGCTTCCTCGAAACCCTCTGAT--T----A--ATAGTACTCCAGGC
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58300759 168 + 146850525 ACATA---------------------------------------------------------AGGGCTGTCGGTGAACTGATAGTGTTGGCAGTAAATAGAAGGTGGATCATTAGTTT--TGAAAAGTGTATTTTAA-----CTCTG----TGTTTTCAGCTGTCTTTTGTTTCCATTTATACTCATTTAGATTTTT-CTGCTTCCTCGAAACCCTCTGAT--T----A--ATAGTACTCCAGGC
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53227302 168 + 139301422 ACATA---------------------------------------------------------AGGGCTGTTGGTGAACTGATAGTGTTGGCAGTAAATAGAAGGTGGATCATTAGTTT--TGAAAAGTGTATTTTAA-----CTCTG----TGTTTTAAGCTGTCTTTTGTTTCCATTTATACTCATTTAGGTTTTT-CTGCTTCCTCGAAGCCCTCTGAT--T----A--ATAGTACTCCAGGC
i chlSab2.chr8             C 0 C 0
s saiBol1.JH378179          2733393 167 +  10880647 ACATG---------------------------------------------------------AGGGCTGTTGGTGAACTGATAGTGTTGGCAATAAATAGAAGGTGGATCA-TAGTTT--TGAAAAGTGTATTTTAA-----TTCTG----TGTTTTAAGCGGTCTTTTGTTTCCATTTATACTCATTTAGCTTTTT-CTGCTTCCTCGAAGCCCTCTGAT--T----A--ATAGTACTCCAGGC
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21541583 147 -  23169006 ACAT---------------------------------------------------------------TGTCAGTAAAT---TAGAGTTGCCAAAAAATAGGAGGTGGATAATTAA-TC--TGAAAAATGTGT----A-----TTTTT----TTTTCTTAG----CTTCTGTTTCCA--TATAGTCAT---AGTGTTT-CTACTTCCTCACAGCCCTCTGGT--T----GCTGTAGCACCGCAGGC
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4214170 169 -   9676502 GC-TC---------------------------------------------------------AAGTCTGAGAGTGAGTTG-TTGTGCTGGCAATAAATAGGATGTGGATGATT--TTG--AGAAGGGTGTGTGTTAA-----TCATGCTTTTCTTTTAAGCCTCTTTATATTTGAATTTATACTCCTAAAGGTC-TT-CAGCCATCTCCTAGCGCTCTGAC--C----ACGGCAGCACTGCAGGC
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907         11143321 161 +  17242564 acGTG---------------------------------------------------------AACTCCGTTAG-----------TGCTGGCAATAAATAGGAGCCGG-TAATTAATTTG-AAAAGTGTGCGTTTTAA-----TCATG----TTTTCTTAGCTTCTTTCTGTTTCAGTTTATACACAAATATGTTTTT-CTGCTGCCTCCTGGTCCTTTGGT--TACATA--GTAGCATTCCAGGC
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84373734 171 +  91571448 ACATC---------------------------------------------------------GAGTCCGTTAGTGAATTGTTAATGCTGGCAATAAATAGCAGGTGGATAATTGACTTG-AGAAGTGTGTGTTTTAG-----TCATT----TTTTTAAAGCTTGCTTCAGTT-CAGTTTATACTCATATATGTTTTCTCTGCTTCCCCCTGGCCCTCTGGT--TAC--A--GTAGCTCCCCGCGC
i equCab2.chr15            C 0 C 0
s pteAle1.KB030580         19638052 146 -  23789964 ACGTT---------------------------------------------------------ACATTCGTCAGTGAGTGGTTAATGCCGGCAGTACACAGAAGGCAGAGAATTAGTTTGAAAAAATGTGTGTTTTAA-----CCATA----TTTTT-TAGCTTCCTCCTGTT-----------TCATATGTGGTTTC-CTGCTTCCTCGTGGTCCTCTCGT-------A--GTA-----------
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20      28039222 225 -  46401353 ACATTAAAAGTTTTTTTTTTTTTTTTTATCTTGCAGTCCTCTTTAAGCATTTTCACATTAAGAAGTTTGTTAGTGAATTGTTAATGTTGACAATAAATAGGAGGTAGACAATTAATTTG-AAAAGTATGTATTTTAA-------TTT----TTTTTTTTGCTTCCTTCTGTTCCAGTTTATACCCATAAATGTTCTT-CTGCTTCCTCATAGTCCTCTGATAAT----A--GTA-CACTCAGGGC
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10387840 175 +  24341844 ACATT---------------------------------------------------------AAGTCTATTAGTGAATTGTTAATGTTGACAGTAAATAGGAGGTGGACAATTAATTTG-AAAAGTGTGTATTTTAATCTTTTTTTT----TTTTTTTTACTTCCTGCTGTTCCACTTTATACCCATAAATGTTTTT-CTGCTTCCTCATGGTCCTCTGATAAT----A--GTA-CACTCAGGGC
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436          1554375 167 -   2788317 ACATT---------------------------------------------------------AGGTCTGTTAGTTAATTATTAGTGTTAGCAGTAAATAATAGGTGGGTAATTAATTTG-AAAAGTACATATTTTAA------TTGT----ACTTTTTAGTTTCCTTCTGTTTCAATTTATACTCATG---TTTTTT-CTGCTTCCTTGTGGTCCTCTGATTTT----A--GCAGCACTGCAGAC
i dasNov3.JH567436         C 0 C 0
e cerSim1.JH767782          7112607   0 -  14545593 C

a score=77901.000000
s hg38.chr8_KI270814v1_alt     7194 55 +    141812 CAATGTTATGTT-----CTCAGTGTGTGTGTATGTGTGTACACATGTGTGTTGGGGG---------GAG
s panTro4.chr8             54948219 55 + 143986469 CAATGTTATGTT-----CTCAGTGTGTGTGTATGTGTGTACACATGTGTGTTGGGGG---------GAG
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58986241 53 + 153482349 CAATGTTATGTT-----CTCA--GTGTGTGTATGTGTGCACACGTGTGTGTTGGGGG---------GAG
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48078125 55 + 100215132 CAATGTTATGTT-----CTCAGTGTGTGTGTATGTGTGCACACATGTGTGTTGGGGG---------GAG
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61627678 55 + 150158102 CAATGTTATGTT-----CTCAGTGTGTGTGTATGTGTGTACACATGTGTGTTCGGGG---------GAG
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58300927 55 + 146850525 CAATGTTATGTT-----CTCAGTGTGTGTGTATGTGTGTACACATGTGTGTTCGGGG---------GAG
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53227470 51 + 139301422 CAATGTTATGTT-----CTCAGTGTGTGTGTATGTGTGTACACATGTGTGTTCAGG-------------
i chlSab2.chr8             C 0 C 0
s saiBol1.JH378179          2733560 64 +  10880647 CAAAGTTGTGTT-----CTCAGTGTGTGTGTACATGTGTGTCGGGGCGGGGTgagagagagagagagag
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21541730 22 -  23169006 CA-----------------------------------GCATGGGTTTGGGGTGGGGG------------
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4214339 23 -   9676502 CAGCATTGTGTC-----CT----GTGTGT-------------------------------------GAG
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907         11143482 60 +  17242564 CAACATTGTTTCCgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtTAGG---------CAG
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84373905 43 +  91571448 CAACATTGTTCT-----------------GTGTGTGCCTGCGCGCGTGTGCGTTAGG---------TGG
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7112607 36 -  14545593 CAACATTGTTTT------------------------CGTGTGTGTGTGTGTGTGAGG---------TAG
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19638198 23 -  23789964 -------------------------------------GCGTGAGTGCGTGTTTGAGG---------TGG
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20      28039447 38 -  46401353 CAGTGTTGTTTT-----CT-GGAGTGTGTGTGTGTATGTAT-------------------------GAG
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10388015 38 +  24341844 CAGTGTTGTTTT-----CT-GAtgtgtgtgtgtgtgtgtgt-------------------------gAG
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436          1554542 33 -   2788317 CA-----TATTT-----CT-GGTGTGTGTGTGTGTGTGTAA-------------------------GAG
i dasNov3.JH567436         C 0 C 0

a score=116201.000000
s hg38.chr8_KI270814v1_alt     7249 37 +    141812 AG------------------AAATAGAT------AG------------ACTGACC--------TATTCTGTACAGTGGATC
s panTro4.chr8             54948274 37 + 143986469 AG------------------AGATAGAT------AG------------ACTGACC--------TATTCTGTACAGTGGATC
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58986294 33 + 153482349 AG------------------AA----AT------AG------------ACTGACC--------TATTCTGTATAGtggatc
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48078180 37 + 100215132 AG------------------AAATAGAT------AG------------ACTGACC--------TATTCTGTACAGTGGATC
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61627733 37 + 150158102 AG------------------TGAGAGAT------AG------------ACTGACC--------TATTCTGTACAGTGGATC
i rheMac3.chr8             C 0 I 444
s macFas5.chr8             58300982 37 + 146850525 AG------------------TGAGAGAT------AG------------ACTGACC--------TATTCTGTACAGTGGATC
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53227521 34 + 139301422 ---------------------GAGAGAT------AA------------ACTGACC--------TATTCTGTACAGTGGATC
i chlSab2.chr8             C 0 C 0
s saiBol1.JH378179          2733624 37 +  10880647 ag------------------agagagag------ag------------aCCGACC--------TATTCTGTACAGtagatc
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21541752  7 -  23169006 ------------------------------------------------ACTGACC--------------------------
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4214362 37 -   9676502 AG------------------GCAGGAGC------AG------------AGCGGCC--------TGCCTGGCCCAGTGGGCA
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907         11143542 49 +  17242564 AG------------------GAAGAGAC------AAGTAGACAG----ACTGACA----GACATTCTTTGtacaatgagta
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84373948 41 +  91571448 AG------------------GGAGAGAC------AG------------AGTGACC----GACACAGTCTGTGCAatgggtg
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7112643 41 -  14545593 AG------------------GGAGAGAC------AG------------ACTGACC----AACATACTCTGTGCAatgggta
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19638221 57 -  23789964 GA------------------TGAGAGAC------GGATGGACAGGCTCAGTGACCCACGGATGTACTCTTTGCAAAgagta
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20      28039485 37 -  46401353 AG------------------AGACAGAC------AG------------AATGATA--------CACTCTATACAATGGATA
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10388053 55 +  24341844 agagagagagagagacagacagacagac------ag------------acTGATC--------TACTCTATACAATGGGTA
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436          1554575 43 -   2788317 AG------------------AGACACACACACAGAG------------ACTGACC--------TTCTCTCTACAGTGGGTA
i dasNov3.JH567436         C 0 C 0
s taeGut2.chr3             14003374 37 - 112617285 AA------------------AACTAGCT------AG------------TGTGTCC--------ATTTCAGGACAGGTGTTC
i taeGut2.chr3             N 0 C 0

a score=168321.000000
s hg38.chr8_KI270814v1_alt     7286 23 +    141812 AAATAAGTTTCTTCTACTGGCCT
s panTro4.chr8             54948311 23 + 143986469 AAATAAGTTTCTTCTACTGGCCT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58986327 23 + 153482349 aaataagtttcttctactggcct
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48078217 23 + 100215132 AAATAAGTTTCTTCTACTGGCCT
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61628214 23 + 150158102 AAATAAGTTTCTTCTTCTGGCCT
i rheMac3.chr8             I 444 C 0
s macFas5.chr8             58301019 23 + 146850525 AAATAAGTTTCTTCTTCTGGCCT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53227555 23 + 139301422 AAATAAGTTTCTTCTTCTGGCCT
i chlSab2.chr8             C 0 C 0
s saiBol1.JH378179          2733661 23 +  10880647 aaataagtttcttctgctggctg
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21541759 10 -  23169006 -------------CTGAAGGCCT
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4214399 23 -   9676502 AAGGGAGTTCCTCCTCTGTGCCT
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907         11143591 23 +  17242564 aaataagttttttctatgggcct
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84373989 23 +  91571448 aaataagtttcttctatgggtct
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7112684 23 -  14545593 aaataagtttcttatatgggcct
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19638278 23 -  23789964 aaataagttacttctatgggcct
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20      28039522 23 -  46401353 AAATAAGTTTCTTCTATGAGTCT
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10388108 23 +  24341844 AAATAAGTTTCTTCTATGAGTCT
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436          1554618 22 -   2788317 AAATAAATTTCTTCCA-GCGCCT
i dasNov3.JH567436         C 0 C 0
s taeGut2.chr3             14003411 14 - 112617285 ATGCTCATTTCTTC---------
i taeGut2.chr3             C 0 C 0

a score=701326.000000
s hg38.chr8_KI270814v1_alt      7309 132 +    141812 GCCTTGGAGCCTATTACTGATTTATA------------A---TATTTCTGTGGAAAAAA--TGTGTTCAAAATT-----TTTAATAAATG--TTCTA---CATTGA----------------------------AGGTGCCAGTTATTC----------CATAAGGTTTAAATTTAGAAG--TAATTTTAATTGTAGGT
s panTro4.chr8              54948334 132 + 143986469 GCCTTGGAGCCTATTACTGATTTATA------------A---TATTTCCGTGGAAAAAA--TGTGTTCAAAATT-----TTTAATAAATG--TTCTA---CATTGA----------------------------AGGTGCCAGTTATTC----------CATAAGGTTTAAATTTAGAAG--TAATTTTAATCGTAGGT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              58986350 131 + 153482349 gccttggagcctattactgatttata------------a---tatttctgtgg-aaaaa--tgtgttcaaaatt-----ttgaataaatg--ttcta---caTTGA----------------------------AGGTGCCAGTTATTC----------CAAAAGGTTTAAATTTAGGAG--TAATTTTAATCGTAGGT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48078240 127 + 100215132 GCCTTGGAGCTTATTACTTATTTATA------------A---TATTTCTGTGG-AAAAA--TGTGTTCAAATTT-----TTGAATAAATG--TTCTA---CATTGA----------------------------AGATGCCAGTTATTC----------CATAAGGTTTAAATTTAG------AATTTTAATCATAGGT
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8              61628237 132 + 150158102 GCCTTGGAGCCTGTTGCTGATTGATA------------A---TATTTCTGTGG-AAAAA--TGTGTTCAAAATT-----TTGAGTAAATG-TTTCTA---CATTGA----------------------------AGGTGCCAGGTATTC----------CATCAGGTTTAAATTTAGAAG--TAATTTTGATCGTAGGT
i rheMac3.chr8             C 0 C 0
s macFas5.chr8              58301042 132 + 146850525 GCCTTGGAGCCTGTTGCTGATTGATA------------A---TATTTCTGTGG-AAAAA--TGTGTTCAAAATT-----TTGAGTAAATG-TTTCTA---CATTGA----------------------------AGGTGCCAGGTATTC----------CATCAGGTTTAAATTTAGAAG--TAATTTTGATCGTAGGT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8              53227578 132 + 139301422 GCCTTGGAGCCTGTTGCTGATTGATA------------A---TATTTCTGTGG-AAAAA--CGTGTTCAAAATT-----TTGAGTAAATG-TTTCTA---CATTGA----------------------------AGGTGCCAGTTATTC----------CATAAGGTTTAAATTTAGAAG--TAATTTTGATCGTAGGT
i chlSab2.chr8             C 0 C 0
s saiBol1.JH378179           2733684 131 +  10880647 gccttggagtctattactgatttata------------a---tatttctatgg-aaaaa--tgtgttcaaaagt-----ttcaGTGAATT--TTCTA---TCTTGA----------------------------AGGTGCCAGTTATTC----------CATAAGGATTAAATTTAGAAG--TAATTTTAATCATAGGT
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541          21541769 124 -  23169006 GCCTTGGAGCCTACTACTGatttatattaattatatata---tatttCTGTGG-GAAAA--TGTGTCTAAAATT-----TTAGGTAACTT--TTCCA---CATTGA----------------------------AGGTGCCTGCTACTC----------CAT---------------------GATTTTAATCACAGGT
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342           4214422 119 -   9676502 GCCTTTGTCCTTCTTCCTTACGTGCG----------------------------GAAAG--TGTGTTCAAATAT-----TTAAGTAACTT--TTCTA---CATCAG----------------------------TGGTGGCAGTTATTT----------CATAATGATTAAGTTAAAAAG--TGATTCTAATCATAGGT
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907          11143614 127 +  17242564 gccttggagcctacttcttatttgta------------a---tatttctatgg-aaaa-----tg-AAAAAAAA-----TTAAGTAGCTT--TTCCA---CATTGG----------------------------AGGCGCCTGTTATTC----------TATGATGATTAGGTTAGAAAG--TAATTTTAATCATAGCT
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15             84374012 118 +  91571448 gccttggagcctacttcttatttata------------a---tatttctatgg-aaaaa--tTTG-----------------AGTAACTT--TTCCA---CATTGG----------------------------AGGTGCCTGTTTTTC----------CGTAATGATTAGAATAAAA-G--TCATTTTAATCATAGGT
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782           7112707 130 -  14545593 gccttggagcctacttcttatttata------------a---tatctctatgg-aaaaa--tttgttcAAAAAT-----TTAAGTAGCTT--TTCCA---CATTGG----------------------------AGATGCCTGTTATTC----------CATAATGATTAGGTTAAAA-A--TAATTTTAATCATAGGT
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580          19638301 108 -  23789964 gccttggaacctgcttcctacttgtg------------c---tatttctatgg-aaaaa--cttgttccaaaat-----ttaagtaactT--TTCCA----------------------------------------------------------------TGATGATTAGGTTAAAACA--TAATTTTAATCATACGT
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20       28039545 123 -  46401353 GTTTTGGAGACTA--C----TCTGTA------------A---TATTTTTATGG-AAAAA--TGTGTGCAAAATT-----TTAAGTAGCTT--TTCCA---CATTAG----------------------------AGGTGCCTGTTATTC----------TATAATG-TTAAGCTAAAAAA--TAATTTTAATCATC-GT
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629          10388131 123 +  24341844 GTTTCGGAGACTACTC----TCTGTA------------A---TACTTTTATGG-AAAAA--TGTGTGCAAAATT-----TTAAGTAAC----TACCA---CATTGG----------------------------AGGTGCCTGTTATTC----------CATAATG-TTAAGCTAAAAAA--TAATTTTAATCATA-CT
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436           1554640 120 -   2788317 GCTTAGCAGAGTACTCCGTATCTATA------------A---TATTTCTATTT-AAGAAACTGTGTTCAAAATT------------------TGCCA---CATTAG----------------------------ACGTGCCTGTTAATG----------CATAATG-ATGA-TAGTAAAG--TTGTTTTAATCTTAGGC
i dasNov3.JH567436         C 0 C 0
s monDom5.chr1             531065941 164 + 748055161 gcttaggataccaagcatcatttata------------atcttgtttttgcag-gaaaa--tacatttagaaca-----ccaaatgactgacttaca---aattagcttctaaatcacaacccttgggaaaattagtgaccacttgtaT----------CATGTAGTTTAAAATTAAAAA--TAATTCTAAGCATAGGT
i monDom5.chr1             N 0 I 1435
s taeGut2.chr3              14003425 144 - 112617285 -CCTCTGTCTCTGTAACTCAACTTCA------------C---TATGTATCTGA-----A--TGTG--CAACCTTATCTGTCTCATACCCC--TTCTAGGCTGTTAA----------------------------GCATGTGAGTTCTTTGGGTCAGAAATATGCTTTGTGGGTTATATAGTATAATTTCTGTAACAAGT
i taeGut2.chr3             C 0 C 0

a score=253637.000000
s hg38.chr8_KI270814v1_alt      7441 57 +    141812 --T---AACATCCTTATTA--ATAA-TG--T-----AAATAGTACA------TAATGATTTGAAA-ATTTTATTATACA
s panTro4.chr8              54948466 57 + 143986469 --T---AACATCCTTATTA--ATAA-TG--T-----AAATAGTACA------TAATGATTTGAAA-ATTTTATTATACA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              58986481 57 + 153482349 --T---AACATCCTTATTA--ATAC-TG--T-----AAATTGTACA------TGATGATTTGAAA-ATTTTATTATACA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48078367 57 + 100215132 --T---AACATCCTTATTA--ATAC-TG--T-----AAATTGTACA------TAATGATTTAAAA-ATTTTATTATACA
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8              61628369 57 + 150158102 --T---AACATCCTTATTA--ATAC-TG--T-----AAATTGTACA------TAATGATTTGAAA-ATTTTATTATACA
i rheMac3.chr8             C 0 C 0
s macFas5.chr8              58301174 57 + 146850525 --T---AACATCCTTATTA--ATAC-TG--T-----AAATTGTACA------TAATGATTTGAAA-ATTTTATTATACA
i macFas5.chr8             C 0 C 0
s chlSab2.chr8              53227710 57 + 139301422 --T---AACATCCTTATTA--ATAC-TG--T-----AAATTGTACA------TAATGATTTGAAA-ATTTTATTATACA
i chlSab2.chr8             C 0 C 0
s saiBol1.JH378179           2733815 53 +  10880647 --T---AGCATTCTT------ATAT-TG--T-----AAGTTGTACA------TAATGATTTGAAA-ATTTTACTGTACG
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541          21541893 31 -  23169006 --T---AAAATCCTTATTA--GCAC-TT--T-----GA---------------------------------ATTATGAA
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342           4214541 57 -   9676502 --TTTAGACAT--TTATTA--ATAC-TT--T-----AG-TTGTACA------CAGTGATTTGAAA-TTTTTATCTTGAA
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907          11143741 57 +  17242564 --T---AAGATACTTATTG--ATAC-TT--T-----TAATTGTATA------CAATGATTTGAAA-AATTTTTCATACA
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15             84374130 57 +  91571448 --T---AAGATCCTTGTTA--ATAC-TT--T-----AAATTGTGTA------CAATGATTTGAAA-ATTTTTTCATGTG
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782           7112837 57 -  14545593 --T---AAGATCCTTATTA--ATAC-TT--T-----AAATTGTGTA------CAGTGATTTGAAA-ATTTTTTCATATA
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580          19638409 59 -  23789964 --T---AAGATCCTTATTA--ATACATT--T-----AAATTGCGTA------CAACAATTTGAAATTTTTTTTCATAAA
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20       28039668 65 -  46401353 --T---AATTTCTTTATTACCATAT-TT--TTATACAAATAACGCACACCTTCTATGTTT------GTGTGCCAACCGC
i loxAfr3.scaffold_20      C 0 I 65
s triMan1.JH594629          10388254 65 +  24341844 --T---AATTTCCTTATTACCATAT-TT--TTACACAAATAACGCACGCCTTCTACGTTT------ATGTGCCAACCCC
i triMan1.JH594629         C 0 I 265
s dasNov3.JH567436           1554760 57 -   2788317 --T---GATGTCCTTACTA--ATGC-TT--T-----AAATTATACA------CTATGATTTGTAA-ATGTTCTCATAAA
i dasNov3.JH567436         C 0 C 0
s taeGut2.chr3              14003569 61 - 112617285 ATT---CATACAAATGTTG--ATAC-TGAAT-----TAATAATATT------TTTTTGTTTTAAT-TTTTTTCCTTACT
i taeGut2.chr3             C 0 C 0
e monDom5.chr1             531066105 1435 + 748055161 I

a score=28175.000000
s hg38.chr8_KI270814v1_alt      7498 103 +    141812 TTGTTCTTG-----TCACCAAAGGGGAAAG------------TTGA----GAgtgtgcgtgtt---catacgtgtgtata-----------------------tgtgcgtgtgtgtctgtg---------------------tg------------------------------------------------------------------------------CACATGC---ACAG--ATACATATA-----------ATCTCTG
s panTro4.chr8              54948523 107 + 143986469 TTGTTCTTG-----TCACCAAAGGGGAAAG------------TTGAAAGAGAgtgtgcgtgtt---catacacgtgtata-----------------------tgtgcgtgtgtgtctgtg---------------------tg------------------------------------------------------------------------------CACATGC---ACAG--ATACATATA-----------ATCTCTG
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              58986538 107 + 153482349 TTGTTCATG-----TCACCAAAGGGGAAAG------------TTGAAAGAGAgtgtgtgtgtt---catacatgtgtata-----------------------tgtgcgtgtgtgtctgtg---------------------tg------------------------------------------------------------------------------cacatgc---acag--atatgtgta-----------ATCTCAG
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48078424 105 + 100215132 TTGTTCATG-----TCACCAAAGGGGAAAG------------TTGAAA--GAgtgtgtgtgtg---catatgtgtgcata-----------------------tgtgcgtgtgtgtctgtg---------------------tg------------------------------------------------------------------------------CACATGC---ACAG--ATACGTATA-----------ATCTCAG
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8              61628426 105 + 150158102 TTGTTCATG-----TCACCAAAGGGGAAAG------------TTGAAAGAGAatgtgtgtgta---catatgtgtgtata-----------------------tgt--gtgtgtgtctgtg---------------------tg------------------------------------------------------------------------------catgtgC---ACAA--ATGCATATA-----------ATCTTAG
i rheMac3.chr8             C 0 C 0
s macFas5.chr8              58301231 105 + 146850525 TTGTTCATG-----TCACCAAAGGGGAAAG------------TTGAAAGAGAatgtgtgtgta---catatgtgtgtata-----------------------tgt--gtgtgtgtctgtg---------------------tg------------------------------------------------------------------------------catgtgC---ACAA--ATGCATATA-----------ATCTTAG
i macFas5.chr8             C 0 C 0
s chlSab2.chr8              53227767 105 + 139301422 TTGTTCATG-----TCACCAAAGGGGAAAG------------TTGAAAGAGAatgtgtgtgta---catgtgtgtgtata-----------------------tgtgcgtgtgtgtctgtg---------------------tg------------------------------------------------------------------------------catgtg-----CAG--ATACATATA-----------ATCTCAG
i chlSab2.chr8             C 0 C 0
s saiBol1.JH378179           2733868 181 +  10880647 TTGTTCATG-----TCACCAAAGGGGAAAA------------TTGA----GAgtgtatgtgtg---catatgtgtgtgtg-----------------------tgtgtgtgtgtgtgtgtg---------------------tgtgtgtttgtatgGACATACACAGATATCTATATATATacatacacacacatatatatacacacatacacacacacacacacacac---acac--acacacgca-----------ATCTCAG
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541          21541924  74 -  23169006 TTGTTTGTA-----CCACTAAAGGGGAAAGAAAA--------TTGAAATA----------------------------------------------------------GTGTGTGTGTGCG---------------------CG------------------------------------------------------------------------------CGCGCGC---GC------TCCCATA-----------ATCTCA-
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342           4214598  60 -   9676502 TTATTGATG-----CCACCAAAGGAGAAAG---A--------TTGAAAGAGGG----------------------------------------------------------------TGCA---------------------CG------------------------------------------------------------------------------CACGTGC---------------GTG-----------ACCTCAG
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907          11143798  79 +  17242564 TTATTCATG-----CCATCAAAGGGGAAAGAAAA--------TGGAAA-----------------------------TTC-----------------------TGTGTTTGTGTGTGTGTG---------------------CG------------------------------------------------------------------------------CACATGT-----------ATGCATA-----------ATCTTAG
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15             84374187  71 +  91571448 TTATTCATG-----CCATCAAAAGGGAAAGAAAA--------TTGAA------------------------------------------------------------AGTGTGTGTGTGTG---------------------TG------------------------------------------------------------------------------CACGTGT-----------ATGTATA-----------ATCTTAG
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782           7112894  73 -  14545593 TTATTTGTG-----CCATCAAAGGGGAAAGAAAA--------TTGAAA----------------------------------------------------------GAGTGTGTGTGTGCG---------------------TG------------------------------------------------------------------------------CACGTGT-----------ATGCATA-----------ATCTTAG
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580          19638468  46 -  23789964 TTATTCATG-----CCATCAAAAGAGAAAGAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATGC-----------ACACATA-----------AT-TCAG
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20       28039798 166 -  46401353 GTGCTTCTGAAAATACCTCAGAGGGGAGAGGGAGC----AATTGGCACACAAAC----------------TATTTGCATAAAAAATACGGCAGTACTTTAAGTTGTACACGATGATTTGAAAAAATGTTCATGAATCGTTTATG-----------------------------------------------------------------------------ACACAAAGGGAAAGA--AAAATTGAAAGTATGTGTGTATCTCAA
i loxAfr3.scaffold_20      I 65 I 6
s dasNov3.JH567436           1554817  86 -   2788317 TTGCTCATG-----CCACCAAAGGGAAAAGAGAA--------TGGAA------------------------AGTTACATA-----------------------TGTGTGTGTTTATCTGTG------------------TTATG------------------------------------------------------------------------------CACATAG------------ATCAAA-----------ATCTCAG
i dasNov3.JH567436         C 0 I 6
s taeGut2.chr3              14003630  85 - 112617285 ----------------------------------CTTTTTTTCTGAAACATTATTAGTTTGTTTCCCTTTCAATGGTTCA-----------------------CTTGACTGT---TTTGTA---------------------TG------------------------------------------------------------------------------AAACTTT---TCCACTAAATCCATA------------------
i taeGut2.chr3             C 0 C 0
e monDom5.chr1             531066105 1435 + 748055161 I
e triMan1.JH594629          10388319 265 +  24341844 I

a score=1469619.000000
s hg38.chr8_KI270814v1_alt      7601 259 +    141812 GGATAGTTTTGATTTATTTTAATCAGAGACATTCTAACCGTGTTTTGCCTGCAT-----TTTGTGAA-ATGAGTGGATAAATTAGTTCTCTCATTTAATGGCAGATTTTTAGA--ATATTTAAATAATAGAAAATATTGTGTCAT----GTTAGCCAGAATG---TTTTGTAGATACATCACAGCAAATTAACGAATGACTAGATTTATATAAGC-AAGTTT---------A--------TTTGACTTGAGTCATCATG--TGTTGAGAATA------------GATTTGAGTAC------TTTTTTTTTTT
s panTro4.chr8              54948630 260 + 143986469 GGATAGTTTTGATTTATTTTAATCAGAGACATCCTAACCGTGTTTTGCCTGCAT-----TTTGTGAA-ATGAGTGGATAAATTAGTTCTCTCATTTAATGGCAGATTTTTAGA--ATATTTAAATAATAGAAAATATTGTGTCAT----GTTAGCCAGAATG---TTTTGTAGATACATCACAGCAAATTAACAAATGACTAGATTTATATAAGC-AAGTTT---------A--------TTTGACTTGAGTCATCATG--TGTTGAGAATA------------GATTTGAGTACA-----TTTTTTTTTTT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              58986645 256 + 153482349 GGATGGTTTTGATTTATTTTAATCAGAGACATCCTAACCGTGTTTTGCCTGAAT-----TTTGTGAA-CTGAGTGGATAAATTAGTTCTCTCATTTAATGGCAGATTTTTAGA--ATATTGAAATAACAGAAAATATTGTGTCAT----GTTAGCCAGAATG---TTTTGTAGATACATCACAGCAAAGTAACGAATGACTAGATTTATATAAGC-AAGTTT---------A--------TTTGACTTGAGTCATCATG--TGTTGAGAATA------------GATTTGAGTAC---------TTTTTTTT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48078529 254 + 100215132 GGATAGTTTTGATTTATTTTAATCAGAGACATCCTAACCGTGTTTTGCCTGAAT-----TTTGTAAA-ATGAGTGGGTAAATTAGTTCTCTAATTTAATGGCAGATTTTTAGA--ATATTTAAATAATAGAAAATATTGTGTCAT----GTTAGCCAGAATA---TTTTGTTGATACATCACAACAAATTAACGAATTACTAGATTTATATAAGC-AAG---------------------TTTGACTTGAGTCACCGTG--TGTTGAGAATA------------GATTTGAGTAC-------CTTTTTGTTT
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8              61628531 261 + 150158102 GGATAGTTTTGATTTATTTTAATCAGAGACATCCTAACTGTGTTTTGCCTAAAT-----TTTGTGAA-ATGAGTAGATAAATTAGTTCCCTCATTTAATGGCAGATTTCTAGA--ATATTTGAATATTAGAAAATGTTATGTCAT----GTTAGCCAGAATG---TTTTGTAGATACACCACAGCAAATTAACCAATGACTAGGTTTATATAAGC-AAG---------------------TTTGACTTGAGTCATCATG--TGTTGAGAATA------------GATTTGAGTATACTTTTTTTTTTTTTTT
i rheMac3.chr8             C 0 C 0
s macFas5.chr8              58301336 257 + 146850525 GGATAGTTTTGATTTATTTTAATCAGAGACATCCTAACTGTGTTTTGCCTAAAT-----TTTGTGAA-ATGAGTAGATAAATTAGTTCCCTCATTTAATGGCAGATTTCTAGA--ATATTTGAATATTAGAAAATGTTATGTCAT----GTTAGCCAGAATG---TTTTGTAGATACACCACAGCAAATTAACCAATGACTAGGTTTATATAAGC-AAG---------------------TTTGACTTGAGTCATCATG--TGTTGAGAATA------------GATTTGAGTATAC----TTTTTTTTTTT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8              53227872 259 + 139301422 GGATAGTTTTGATTTATTTTAATCAGAGACATCCTAACCGTGTTTTGCCTGAAT-----TTTGTGAA-A-GAGTAGATAAATTAGTTCCCTCATTTAATGGCAGATTTCTAGA--ATATTTGAATATTAGAAAATATTACGTCAT----GTTAGCCAGAATG---TTTTGTAGATACACCACAGCAAATTAACCAATGACTAGATTTATATAAAC-AAGTTT---------A--------TTTGACTTGAGTCATCATG--TGTTGAGAATT------------GATTTGAGTATAC-----TTTTTTTTTT
i chlSab2.chr8             C 0 C 0
s saiBol1.JH378179           2734049 256 +  10880647 GGATAGTTTTGATTTATTTTAATCAGAGGCATCCTAACTAGGTTTTGCCTGAAT-----TTTGTGAA-GTGGGTGGAGAAATTAGTTCTCTCATTTAATGGTGGATTTTTAGA--ATATTTAAATATTAGAAAATACTGTGTTAT----GTTAGGCAGAATG---TTTTGTAGATACATCACAGCAAATTAATGAATGACTAGATTTATAGAAGC-AAGTTT---------A--------TTTGACTTGAGCCATCATG--TGTTGAGAATA-----------------GAGTATAC----TTTTTTTTTGT
i saiBol1.JH378179         C 0 I 325
s otoGar3.GL873541          21541998 258 -  23169006 GGATAATTTTGATTGATTTTAATCCCAAACTTCCTAGTCATGTTTGGTCTGAAC-----TTTATGAA-ATGAGTGGATAAATTGGTTC-----TTTAATGGTGG-TTTCTAGACTATATTACACTATTAGAGAACACTGTCTCACGTTAGTTAGCCAGGAGG---TATTGTAGACTTATTACAGCATATTCGTGAATGACTTGTTTTATATAAAG-ATGTTT---------C--------CTTGGCTTGATCCATTATG--TTTTAAGAATAA--------ATAGGTTTGAGTGT------TTCTTT-----
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342           4214658 231 -   9676502 TGATGG-TGTGATGGATTTTAATCCCAGAGATCCTAATCCTATGTTGCCTGAAT-----TTTGTGAA-ATGAATGGATAAA----TTCTCTCATTT----GTTGATTTCT-----ACATTAAGATATTAGAAAATGCTTC--CAT----GTAAGCCAGAGTG---TCTTGTAGATACATTACAGCAAATTATCAGATGACAA-----ATATATTCTAAATTT---------A--------TTAGAAT----------TG--TTTTGTGAATA------------GATTTGGGCATAC----TCATTTTTT--
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907          11143877 252 +  17242564 GGATAATTTGGGTGGATTTTAAAACCAGAGAACTGAGTCATGTTTTGCCTGAAT-----TTTGTGAC-ATGAATGGATAAGTTAGTTCTCTCATTTAATGGTAGATTTCT-----ACG--------TTAGAAGAAACTGGGTCAT----CTCAGTGAGAACG---TTTTGTAGATAGATTACTGCACATTAAGGACTGACTGCATTTGTGTAAGG-AAGCTT---------A--------TTTGACTTGAACCATCATG--TTTTCAGAATAA--------ATAAATTAGGGTGTAC----CTGCTTTTA--
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15             84374258 253 +  91571448 GGATAGTTTAGGTTAATTTTAAAACTAGGGATTCTAATCATGTTTTGCCTGAAC-----TTTTTGAA-CTGAATGGATAAA----TTCTTTCATTTAGTGGTGGATTTCT-----ACGTTAGAACCTTAGAAAATACTCTGCCAT----CTCAG-CAAAATG---TTTTGTAGGTAGATTACTGCAAATTAAGGA-TGACTAGATTTGTGTAAGG-AAGCTC---------A--------TTTGACTTGAGCCATCATG--TTTTCAGAATAA--------ATAGATTTGGGTGTA-----CTGCTTTTT--
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782           7112967 258 -  14545593 GCATAGTTTGGTTTGATTTTAAAACCGGAGATCCTAATCTTGTTTTGCCTGAAT-----TTTGTGAA-ATGAATGGATAAATTAGTTCTGTCA-TTAATGGTGGATTTCT-----ACATTAGAACATTAGAAAATACTGTGTCAT----GTTAG-CAAAATG---TTCTGTAGGTAGATTACTGCAAATTAAGGATTGACTAGATTTGTACAAGG-AAGCTT---------A--------TTTGACTTGAGCCATCACG--TTTTCAGAATAA--------ATAGATTTGGGTGTAC----CTGCTTTTT--
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580          19638514 259 -  23789964 GGATAGTTTGGATTGATTTCAAAACCAGAGATTCTAATCATGTTTTGCATGAAT-----TTTGTGAA-ACGAATGGATCAATTAGTTC--TCATTTAATGGTGAATTTCT-----ACA---------TGGAAAATGCTGTGTTGG----CTCAGCCAGAACGTGATTTCGTAGGTCAATTACTGCAAATTGAGT--TGACTAGATTTGTACAAGG-AAGCTTGTACAAAAAA--------CGTGACTTGAGCCATCACG--TTTTCAGAATGA--------ATAGATTCGGGTGTAT----GTGCCTCTC--
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20       28039970 263 -  46401353 GAATAGTTTAGATTGATTTCAAACCCAGCAATCCTGATCAGTTTTTGCCTGAAT-----TTTGTGAA-ATGAGTGGATAAATA--TTTTCTCACTTCATGATGGGTTTCT-----ACATTAAAGCGTTAGAAAATATTGTGCCGT----CTCTG--AAAATG---TTCTGCAGATATAGTACAGCCAATTAAAAATTGAGTAGATCTACATAAGG-AAGTTT---------A--------TTTGACTTGATCCATCATG--TTTTGAGAATAAATAGATTTATAGATTTGAGCGTTC----CAATTTTT---
i loxAfr3.scaffold_20      I 6 C 0
s triMan1.JH594629          10388584 255 +  24341844 GAATAGTTTGGATTGATTTCAAACCCAGGAATCCTAATCAGTTTTTGCCTGAAT-----TTTGTGAA-ATGAATGGGTAAATA--TTTTCTCGTTTCATGATGGGTTTCT-----ACATTAAAGCAGTAGAAAATACTGTGCCAT----CTCCG--AAAATG---TTTTGTGGATATAGTACAGCAAATTAAAAATTGACTAGATCTGTATAAGT-AAGTTT---------A--------TTTGACTTGATCCATCATG--TTTTGAGAATAG--------ATAGATTTGGGTGTAC----CAATTTTT---
i triMan1.JH594629         I 265 C 0
s dasNov3.JH567436           1554909 236 -   2788317 GGATAGTTGGGATTAGTTTTAAACCAAGAGATCCTAGTCATTTTTTTCCTGAAT-----TAAAAAAA-ATTAATAGATTAGTC--TTGTCC--TTTAATGGTTGGTTTCT-----GCATTAGAACATT-GGAATCACTGTGCCAT----CTCAGCCAGAATA---TTATGTAGCTGGATTACA---AATTAAAGATCGACTAGATTGATATAAGG-AAGTTT---------A--------TTTGACTTGAGCTATTATG--CTGTGAGAATA---------ATAG------------------TTTTTT---
i dasNov3.JH567436         I 6 C 0
s taeGut2.chr3              14003715 243 - 112617285 GAATCATCTTGAGTAAT------------AAACTTCGCTCTGTTTCATTTGCATCATTGCTTATAAAGAAGAGAAAACAGGTCAAGTTATGCCCTGAAAGAATATCTCCTCAT--TTATTTAGGATTTTTCAAATACT-----------GTTA-----AAAG---CATAATAGAAATGTGGTAGTAAGAGAACGGATGG--AGAAGTGTATGTGA-CAGTTT---------AAGGGACAGTTAAATTTAGGGAACTGTGCCTATTAAAAAGG---------ACAGCCCTG-----------CCTTTTG----
i taeGut2.chr3             C 0 C 0
e monDom5.chr1             531066105 1435 + 748055161 I

a score=888241.000000
s hg38.chr8_KI270814v1_alt      7860 145 +    141812 AGTAAATT------CTAATATTTAGTAGTTT-TTGTTGTTTTTTGAGT--CAT-TGTTAAAAAGGTAAAGACAAGAGTACAAGGCTGGTATTGGAGAAATTAGTTTGGGAGAAC----AACTGATGTTCTGTCAGGGCTGTTCTGAAATTCATCCTAAT
s panTro4.chr8              54948890 145 + 143986469 AGTAAATT------CTAATATTTAGTAGTTT-TTGTTGTTTTTTGAGT--CAT-TGTTAAAAAGGTAAAGACAAGAGTACAAGGCTCGTATTGGAGAAATTAGTTTGGGAGAAC----AACTGATGTTCTGTCAGGGCTGTTCTGAAATTCATCCTAAT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              58986901 144 + 153482349 AGTAAATT------CTAATATTTAGTAGTTT-TTGTCGTTTTTTGAGT--CAT-TGTT-AAAAGGTAAAGACAAGAGTACAAGGCTGGTATTGGAGAAATTAGTTTGGGAGAAC----AACTGATGTTCTGTCAGGGCTGTTCTGAAATTCATCCTAAT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48078783 144 + 100215132 AGTAAATT------CTAATATTTAATAGTTT-TTGTTGTTTTTTGAGT--CAT-TGTTAAAAAGGTAAAGAC-AGAGTACAAGGCTGGTATTGGAGAAATTAGTTTGGGAGAAC----AACTGATGTTCTCTCAGGGCTGTTCTGAAATTCATCCTAAT
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8              61628792 139 + 150158102 AGTAAATT------CTAATGTTTAGTAGTTT-TTGTTGTATTTTGAGT--CAT-TGTC-----GGTAAAGAC-ATAGTACAAAGATGGTATTGGAGACATTAGTTTGGGAGAAC----AACTGATGTTCTGTCAGGGCTATTCTGAAATTCATCCTAAT
i rheMac3.chr8             C 0 C 0
s macFas5.chr8              58301593 139 + 146850525 AGTAAATT------CTAATGTTTAGTAGTTT-TTGTTGTATTTTGAGT--CAT-TGTC-----GGTAAAGAC-ATAGTACAAGGCTGGTATTGGAGACATTAGTTTGGGAGAAC----AACTGATGTTCTGTCAGGGCTATTCTGAAATTCATCCTAAT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8              53228131 144 + 139301422 AGTAAATT------CTAATGTTTAGTAGTTT-TTGTTGTTTTTTGAGT--CAT-TGTTAAAAAGGTAAAGAC-AGAGTACGAGGCTGGTATTGGAGACATTAGTTTGGGAGAAC----AACTGATGTTCTGTCAGGGCTATTCTGAAATTCATCCTAAT
i chlSab2.chr8             C 0 C 0
s saiBol1.JH378179           2734630 141 +  10880647 AGTAAATT------CTATTATTTATTACTTT-CTGTT---TTGTGAGT--CAT-TGTTAAAAAGGTAAAGGC-AGAGTGCAAGACTGGTATTGGAGAAATTAGTTTGGGAGAAC----AACTGATGTTCTGTTGGGGCTATGCCAAAATTCATACTAAT
i saiBol1.JH378179         I 325 C 0
s otoGar3.GL873541          21542256 144 -  23169006 ACTAAATT------CTAATATTTAATACTTT-TTGTTGTTTTGTGATCAATAT-TGTCAAAAAGTTAAAGGC---AGTACAAAGCTGGTGTGGGAGAAGTTAGTTTGGGAAAAC----AAGTGATATTTTTTCAGGACTATTCTGAAACCCATATTTAT
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342           4214889 139 -   9676502 AGTAAGTG------CTAATACTCAGTACTTT-TTGTTGTTTTGTGAGTACAGT-TGTTCAACAGAGAAAGGC-AGAGT--CAAGCTAGGGTTGGAGAAGGCAGCTTGGG--AAC----AGCGGATGTTGTG-CAGGGCTCCCTTGAACGCTGCCCT--T
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907          11144129 146 +  17242564 AGTGAATT------CTAATATTTAGTATTTT-TTGCTATTTTGTAAGT--TAT-ACTTGAAAAGATAACTGC-AGA-TACAGAGCTG-TATTGGCGGAGTTAGTTTGGGTAAGCCAAAAGCTGATGTTCTGTCGGGACTATTCTGAAATCCAGGTTTCT
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15             84374511 143 +  91571448 AGTTAATT------CTAATACTTAGTACTTTTTTGTTGTTTTGTA------AT-ACTTGAAAAGATAA--AC-AGAGTGTAAAGCTGATGTGAGAGAACTTAGTTTGGGCAAACAAATAACTGATGTTCTATTAGGACTCTTCTAAAATCCAGATTTGT
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782           7113225 141 -  14545593 AGTTAATT------CTAATATTTAGTACTTT----TTGTTGAGTA------AT-ACTTGAAAAGGTAAACAC-AGAGTGTAAAGCCAATATTGGAGAACTTAGTTTGGGTAAACAAATAATTGGTGTTCTGTCAGGAGTATTCTGAAATCCAGATTTAT
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580          19638773 135 -  23789964 AGTAAATT------CTAATATTTAGTACTTT----GCTTTGCGTA------AT-ACTTGAAAAG------AG-AGAGTACAAAGCTGATATTGGAGAAGTTCATTTGGGGAAACAAATAACTGGTGTTCTGACAGGACAAGTCTGAAATCCAGGTTTAT
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20       28040233 147 -  46401353 AGTAAATT------CTAATATTCAGGGCTTT----TTGTTTTATGAATGATAC-TGTTAAAAAGATAAAGGC-AGAGTACAACACTGGTACTGGAGAGATTCATTTGAGTAAACAAATAACTGGCATTCTGTCAGGAGTGTTTTGAAATCCAGATTTAT
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629          10388839 148 +  24341844 AGTAAATT------CTAATATTTAGGACCTT----TTGTTTTATGAATAATACTTTTTAAAAAGATAAAGTC-AGAGTATAACACTGGTACTGGAGAAATTAATTTGGGTAAACAAATAACTGGTATTCTGTCAGGAGTATTTTGAAATCTAGATTTAT
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436           1555145 146 -   2788317 AGTAAATT------CTAATATTTAGCACTTT----TTGTTTTATGACTAGTAA-TGTTTAAAAAATAAAGGC-AGAGTGCAAAGCTGGTACTGAAGAAATTAATTTGGGGAAACATATAACCGATG-TCTGTCAGGACCCTTCTGAAATCTAGATTTAT
i dasNov3.JH567436         C 0 C 0
s taeGut2.chr3              14003958 114 - 112617285 AGTCTCTTTCCCTGCTAGCACTTAATGTTTT-------------AACT--TGG-TGTT------------AC-A------------GGTTTTGGAGAGGTTCAGTTGTTACAAG----AATGAGTGTTCTGTAGTTGTTGTTTTAATTGCTACTTTAAA
i taeGut2.chr3             C 0 I 5
e monDom5.chr1             531066105 1435 + 748055161 I

a score=46691.000000
s hg38.chr8_KI270814v1_alt      8005 27 +    141812 TACTGTTTGTTTTT--ATCTT--TGTGCCTT
s panTro4.chr8              54949035 27 + 143986469 TACTGTTTGTTTTT--ATCTT--TGTGCCTT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              58987045 27 + 153482349 TACTGTTTGTTTTT--ATCTT--TGTGCCTT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48078927 27 + 100215132 TACTGTTTGTTTTT--ATCTT--TGTGCCTT
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8              61628931 27 + 150158102 TACTGTTTGTTTTC--ATCTT--TGTTCCTT
i rheMac3.chr8             C 0 C 0
s macFas5.chr8              58301732 27 + 146850525 TACTGTTTGTTTTC--ATCTT--TGTGCCTT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8              53228275 27 + 139301422 TACTATTTGTTTTT--ATCTT--TGTGCCTT
i chlSab2.chr8             C 0 C 0
s saiBol1.JH378179           2734771 27 +  10880647 CACTGCTTGCTTTT--GTCTC--TGTGCCTT
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541          21542400 29 -  23169006 TACTCTTTTTTTTTTAATCAT--TGTGTCTT
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342           4215028 13 -   9676502 CACTCACTGGCTT------------------
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907          11144275 23 +  17242564 TACTCCT---TTTC--CTCCC--TGTTCC-T
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15             84374654 23 +  91571448 TACTCC----TTCC--ATCAT--TGTGCCTT
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782           7113366 24 -  14545593 TACTCCT---TTTC--ATTAC--TGTGCCTT
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580          19638908 24 -  23789964 GACAGCT---TTTC--ACCAC--TGTGCCTT
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20       28040380 25 -  46401353 TACTTCTT--TTTC--ATAAT--TGTGCCTT
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629          10388987 25 +  24341844 TACTTCTT--TTTC--ATAGT--TATGCCTT
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436           1555291  4 -   2788317 TACT---------------------------
i dasNov3.JH567436         C 0 C 0
s taeGut2.chr3              14004077 28 - 112617285 CCATGTTTGCGTAC--TCTGACCTTTACCT-
i taeGut2.chr3             I 5 C 0
s melUnd1.JH556615           5052225 26 -  27607347 TACTGTTTGCTTTA--TCCAA--GATACCT-
i melUnd1.JH556615         N 0 C 0
e monDom5.chr1             531066105 1435 + 748055161 I

a score=47911.000000
s hg38.chr8_KI270814v1_alt      8032 11 +    141812 GAGTTATG----------------AAG
s panTro4.chr8              54949062 11 + 143986469 GAGTTATG----------------AAG
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              58987072 11 + 153482349 GAGTTATG----------------AAG
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48078954 11 + 100215132 GAGTTATG----------------AAG
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8              61628958 11 + 150158102 GAGTTATG----------------AAG
i rheMac3.chr8             C 0 C 0
s macFas5.chr8              58301759 11 + 146850525 GAGTTATG----------------AAG
i macFas5.chr8             C 0 C 0
s chlSab2.chr8              53228302 11 + 139301422 GAGTTGTG----------------AAG
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234        1912 11 +    110629 GAGTTATG----------------AAG
i calJac3.chrUn_GL286234   N 0 C 0
s saiBol1.JH378179           2734798 11 +  10880647 GAGTTATG----------------AAG
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541          21542429 10 -  23169006 AAGTTGTG-----------------AG
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342           4215041 10 -   9676502 GAG-TAGG----------------AGG
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907          11144298 11 +  17242564 GAGTTACA----------------GAA
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15             84374677 11 +  91571448 AAATTATG----------------GAA
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782           7113390 11 -  14545593 AAATTATG----------------GAA
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580          19638932 11 -  23789964 GAGTTACG----------------AGA
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20       28040405 10 -  46401353 GAGTTATG-----------------AG
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629          10389012 10 +  24341844 GAGTTATG-----------------AA
i triMan1.JH594629         C 0 C 0
s taeGut2.chr3              14004105  6 - 112617285 --ATTATG-------------------
i taeGut2.chr3             C 0 I 4794
s melUnd1.JH556615           5052251 22 -  27607347 --GTTGTTGCAAACTGGGAAAAAG---
i melUnd1.JH556615         C 0 C 0
e monDom5.chr1             531066105 1435 + 748055161 I
e dasNov3.JH567436           1555295  0 -   2788317 C

a score=391348.000000
s hg38.chr8_KI270814v1_alt      8043 94 +    141812 AAAGCTGTAATCCCTGAGCCACGTAATGC-TGCACAGCTTCC-ATGCAG-----CC-AAGAG---ACA---------GTGCTGCGTAGTGCTGTGCATGGCTTTAGGGCTTGGT--
s panTro4.chr8              54949073 94 + 143986469 AAAGCTGTAATCCCTGAGCCACGTAATGC-TGCACAGCTTCC-ATGCAG-----CC-AAGAG---ACA---------GTGCTGTGTAGTGCTGTGCAAGGCTTTAGGGCTTGGT--
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              58987083 78 + 153482349 AAAGCT----------------GTAATGC-TGCACAGCTTCC-ATGCAG-----CC-GAGAG---ACA---------GTGCTGCGTAGTGCTGTGCATGGCTTTAGGGCTTGGT--
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48078965 94 + 100215132 AAAGCTGTAATCCCTGAGCCACGTAATGC-TGCACAGCTTCC-ATGCAG-----CC-AAGAG---ACA---------GTGCTGTGTAGTGCTGTGTAtggctttagggtttggt--
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8              61628969 94 + 150158102 AAAGCTGTAATCCTTGAGCCACGTAATGC-CACACAGCTTCC-ATGCAG-----CC-AGGAG---ACA---------GTGCTGTGGAGTGCTGTGCATGGCTTTAGGGCTTGGT--
i rheMac3.chr8             C 0 C 0
s macFas5.chr8              58301770 94 + 146850525 AAAGCTGTAATCCTTGAGCCACGTAATGC-CACACAGCTTCC-ATGCAG-----CC-AGGAG---ACA---------GTGCTGTGGAGTGCTGTGCATGGCTTTAGGGCTTGGT--
i macFas5.chr8             C 0 C 0
s chlSab2.chr8              53228313 94 + 139301422 AAAGGTGTAATCCTTGAGCCACGTAATGC-CACACAGCTTCC-ATGCAG-----CC-AAGAG---ACA---------GTGCTGTGGAGTGCTGTGCATGGCTTTAGGGCTTGGt--
i chlSab2.chr8             C 0 I 52
s calJac3.chrUn_GL286234        1923 90 +    110629 AAAGCTGTAATCCTTGAGACACATAAT-C-CACACAGCTTCC-ATGCAG-----GC-AAGAG---ACA---------GTGCTGTGGAGTGCTGTGCATGGCTTTACGGCTT-----
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179           2734809 90 +  10880647 AAAGCTGTAATCCTTGAGACACATAAT-C-CACACAGCTTCT-GTGCAG-----CC-AAGAG---ACA---------GTGCTATGGAATGCTGTGCATGGCTTTAGGGCTT-----
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541          21542439 89 -  23169006 AAAGCTCTAATTGTAGAGCCACGTAACCC-CATGCAGCGTTC-CTGTGG-----CT-GGGGGTGTGCA---------ATGCT--GGGGCACTGAGCATGGGTTTAGGG--------
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342           4215051 95 -   9676502 AAGGCTGTGGTCCTTGAGCCACAGACC-C-CACCCTGCTTCC--TGTTG-----CT-GGGAG---ACATGGAATCCTGGGCCACTGAGTGTAGTG------TTTAGGGGTTGGT--
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907          11144309 90 +  17242564 AAAGCTGTAAACCTTGAGCCTCAGGACCC-CATAGAGCTTTC-AGGTAG-----CT-GGTAA---ACATGGA-----ACGCT--AGGACCCCAAGTGTGGCTTTATGG--------
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15             84374688 89 +  91571448 AAAGCTGTAATCTTCTAGCCACATAACCC-CGCAGTGCTCTC-ATGTAG-----CT-AGGAG---ACGTGGA-----ATGCT---GGGGCCTGAGTGTGGCTTTATGG--------
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782           7113401 89 -  14545593 AAAGCTGTAATCTTCAAGCCACATAACCG-CACAGTGCTTGC-ATATAG-----CT-AGGAG---ACATGGA-----ATTCC---GGGGCCTGAGTGTGGCTTTATGG--------
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580          19638943 89 -  23789964 CAAGCTGTAATCCG-GAGCCACATAACCC-CACGGCGCTTTC-ACGTAG-----CTCAGGAG---AGGTGGA-----ATCCC--AGGGGGCCGAGTGT-GCCTTGTGG--------
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20       28040415 80 -  46401353 CAAGCTCTAATCCTTGAGCCACGTAATCC-CAGAGTGCTTTCCATGTAG-----CT-AGGAG---ACTTGGA-----ATGTT-----------TCTGCAGCTTAGG----------
i loxAfr3.scaffold_20      C 0 I 8
s triMan1.JH594629          10389022 80 +  24341844 AAAGCTCTAATCCTTGAGCCACATAATCC-CAGAGTGCTTTCAGTGTAG-----CT-AGGAG---ACTTGGC-----ATATT-----------CTTGCAGCTTAGG----------
i triMan1.JH594629         C 0 I 8
s dasNov3.JH567436           1555295 80 -   2788317 AAAGTTCTAATCGTTGAGCCACATAACCC-TAAGGTCCTTTTTATGTGG-----CT-AGGAG---ACCTGGA-----ATGCT-----------CTTGTGGCTTCAG----------
i dasNov3.JH567436         C 0 I 9
s melUnd1.JH556615           5052273 91 -  27607347 AGGAGTATGGGAATTGAACCACAATATGCATGAAATAATACC-AAGTGGAAGTTTT-ATCAG---ACAT--------GTACT------------TTGCGATTTGAGGATTATCTGC
i melUnd1.JH556615         C 0 C 0
e monDom5.chr1             531066105 1435 + 748055161 I
e taeGut2.chr3              14004111 4794 - 112617285 I

a score=-34426.000000
s hg38.chr8_KI270814v1_alt      8137 11 +    141812 -Atttttgtttt
s panTro4.chr8              54949167 11 + 143986469 -ATTTTTGTTTT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              58987161 11 + 153482349 -ATTTTTGTTTC
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48079059 11 + 100215132 -atttttgtttt
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8              61629063  4 + 150158102 --------TTTT
i rheMac3.chr8             C 0 C 0
s macFas5.chr8              58301864  4 + 146850525 --------TTTT
i macFas5.chr8             C 0 C 0
s orcOrc1.KB316907          11144399  1 +  17242564 -----------G
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15             84374777  1 +  91571448 -----------G
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782           7113490  1 -  14545593 -----------G
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580          19639032  1 -  23789964 -----------G
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20       28040503 11 -  46401353 -ATGGATTTATG
i loxAfr3.scaffold_20      I 8 C 0
s triMan1.JH594629          10389110 11 +  24341844 -AAGGGTTTATG
i triMan1.JH594629         I 8 C 0
s dasNov3.JH567436           1555384 11 -   2788317 -GTGACTTTATG
i dasNov3.JH567436         I 9 C 0
s melUnd1.JH556615           5052364 11 -  27607347 ATTTACTATAT-
i melUnd1.JH556615         C 0 C 0
e calJac3.chrUn_GL286234        2013  0 +    110629 C
e monDom5.chr1             531066105 1435 + 748055161 I
e taeGut2.chr3              14004111 4794 - 112617285 I
e speTri2.JH393342           4215146  0 -   9676502 C
e otoGar3.GL873541          21542528  0 -  23169006 C
e saiBol1.JH378179           2734899  0 +  10880647 C
e chlSab2.chr8              53228407 52 + 139301422 I

a score=-4719.000000
s hg38.chr8_KI270814v1_alt      8148 3 +    141812 ttt
s panTro4.chr8              54949178 3 + 143986469 TTG
i panTro4.chr8             C 0 C 0
s nomLeu3.chr16             48079070 3 + 100215132 ttt
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8              61629067 3 + 150158102 TTG
i rheMac3.chr8             C 0 C 0
s macFas5.chr8              58301868 3 + 146850525 TTG
i macFas5.chr8             C 0 C 0
s otoGar3.GL873541          21542528 1 -  23169006 --G
i otoGar3.GL873541         C 0 C 0
s orcOrc1.KB316907          11144400 3 +  17242564 GTT
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15             84374778 3 +  91571448 GTT
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782           7113491 3 -  14545593 GTT
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580          19639033 3 -  23789964 GTT
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20       28040514 3 -  46401353 GGG
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629          10389121 3 +  24341844 GGA
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436           1555395 3 -   2788317 GGG
i dasNov3.JH567436         C 0 C 0
s melUnd1.JH556615           5052375 3 -  27607347 TCT
i melUnd1.JH556615         C 0 C 0
s pelSin1.JH209035           1272357 3 +   2845976 ttt
i pelSin1.JH209035         N 0 C 0
e calJac3.chrUn_GL286234        2013 0 +    110629 C
e monDom5.chr1             531066105 1435 + 748055161 I
e taeGut2.chr3              14004111 4794 - 112617285 I
e speTri2.JH393342           4215146 0 -   9676502 C
e saiBol1.JH378179           2734899 0 +  10880647 C
e chlSab2.chr8              53228407 52 + 139301422 I
e ponAbe2.chr8              58987172 0 + 153482349 C

a score=5667.000000
s hg38.chr8_KI270814v1_alt      8151 1 +    141812 t
s panTro4.chr8              54949181 1 + 143986469 T
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              58987172 1 + 153482349 T
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48079073 1 + 100215132 g
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8              61629070 1 + 150158102 T
i rheMac3.chr8             C 0 C 0
s macFas5.chr8              58301871 1 + 146850525 T
i macFas5.chr8             C 0 C 0
s otoGar3.GL873541          21542529 1 -  23169006 T
i otoGar3.GL873541         C 0 C 0
s orcOrc1.KB316907          11144403 1 +  17242564 T
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15             84374781 1 +  91571448 T
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782           7113494 1 -  14545593 T
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580          19639036 1 -  23789964 T
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20       28040517 1 -  46401353 C
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629          10389124 1 +  24341844 T
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436           1555398 1 -   2788317 C
i dasNov3.JH567436         C 0 C 0
s melUnd1.JH556615           5052378 1 -  27607347 T
i melUnd1.JH556615         C 0 I 1
s chrPic2.chrUn_KK088203v1   8724317 1 +  11360908 t
i chrPic2.chrUn_KK088203v1 N 0 I 1
s pelSin1.JH209035           1272360 1 +   2845976 t
i pelSin1.JH209035         C 0 C 0
e calJac3.chrUn_GL286234        2013 0 +    110629 C
e monDom5.chr1             531066105 1435 + 748055161 I
e taeGut2.chr3              14004111 4794 - 112617285 I
e speTri2.JH393342           4215146 0 -   9676502 C
e saiBol1.JH378179           2734899 0 +  10880647 C
e chlSab2.chr8              53228407 52 + 139301422 I

a score=-60075.000000
s hg38.chr8_KI270814v1_alt      8152 21 +    141812 tttttgg-t-t-tttt------tttCCCAG------------
s panTro4.chr8              54949182 14 + 143986469 TTTTTTG-T-T--------------CCCAG------------
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              58987173 21 + 153482349 TTTTTTG-T-T-TTTT------TTCCCCAG------------
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48079074 22 + 100215132 ttttttg-t-tttttt------ttCCCCAG------------
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8              61629071 27 + 150158102 TTTTTTG-T-T-CCCCCCACCGCCCTCCAG------------
i rheMac3.chr8             C 0 C 0
s macFas5.chr8              58301872 27 + 146850525 TTTTTTG-T-T-CCCCCCACCGCCCTCCAG------------
i macFas5.chr8             C 0 C 0
s calJac3.chrUn_GL286234        2013 14 +    110629 ---TTTG-T-T-----------TTTCCCAG------------
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179           2734899 14 +  10880647 ---TTTG-T-T-----------TTTCCCAG------------
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541          21542530 17 -  23169006 TGCTTTT-A-T-----------TTTTCTAG------------
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342           4215146  6 -   9676502 ------------------------TTCCAG------------
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907          11144404 16 +  17242564 TGTCTTA---T-----------TTTTCCAG------------
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15             84374782 18 +  91571448 TGTTTTATT-T-----------TTTTCCAG------------
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782           7113495 17 -  14545593 TGTTTTA-T-T-----------TTTTCCAG------------
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580          19639037 17 -  23789964 GGTTTTA-T-T-----------TTTTCCAG------------
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20       28040518 15 -  46401353 TTGG--T-T-T-----------TCACCCAG------------
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629          10389125 17 +  24341844 TTGGTTT-T-T-----------TTCCCTAG------------
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436           1555399 18 -   2788317 TTGGTTT-TAT-----------TTTTCTAC------------
i dasNov3.JH567436         C 0 C 0
s melUnd1.JH556615           5052380 26 -  27607347 ---TTTA-T-G-----------AGCTGGATAAATCTAGCTAA
i melUnd1.JH556615         I 1 C 0
s cheMyd1.KB479743           2212019 20 +   4979691 ---tttt-t-g-----------cttttCAGTTACCT------
i cheMyd1.KB479743         N 0 C 0
s chrPic2.chrUn_KK088203v1   8724319 20 +  11360908 ---tttt-t-g-----------cttttcagttaCCT------
i chrPic2.chrUn_KK088203v1 I 1 C 0
s pelSin1.JH209035           1272361 20 +   2845976 ---tttt-t-g-----------gtttttggttacct------
i pelSin1.JH209035         C 0 C 0
e monDom5.chr1             531066105 1435 + 748055161 I
e taeGut2.chr3              14004111 4794 - 112617285 I
e chlSab2.chr8              53228407 52 + 139301422 I

a score=61211.000000
s hg38.chr8_KI270814v1_alt      8173 17 +    141812 ATCTTCTGGAGCCTGTG---
s panTro4.chr8              54949196 17 + 143986469 ATCTTCTGGAGCCTGTG---
i panTro4.chr8             C 0 I 1
s ponAbe2.chr8              58987194 17 + 153482349 ATCTTCTGGAGCCTATG---
i ponAbe2.chr8             C 0 I 1
s nomLeu3.chr16             48079096 17 + 100215132 ATCTTCTGGAGCCTGTG---
i nomLeu3.chr16            C 0 I 1
s rheMac3.chr8              61629098 17 + 150158102 ATCTTCTGGAGTCTGTG---
i rheMac3.chr8             C 0 I 1
s macFas5.chr8              58301899 17 + 146850525 ATCTTCTGGAGTCTGTG---
i macFas5.chr8             C 0 I 1
s calJac3.chrUn_GL286234        2027 17 +    110629 ACCTTCTGGAGCCTATG---
i calJac3.chrUn_GL286234   C 0 I 1
s saiBol1.JH378179           2734913 17 +  10880647 ATCTTCTGGAGCCTATG---
i saiBol1.JH378179         C 0 I 1
s otoGar3.GL873541          21542547 17 -  23169006 GCTCTCTGGGGCCTCTG---
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342           4215152 14 -   9676502 --CTTCTGGGGCTGAA----
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907          11144420 17 +  17242564 CTCTTGTGGGGCTTGTG---
i orcOrc1.KB316907         C 0 I 1
s equCab2.chr15             84374800 17 +  91571448 CTCTTCTGGGGCTTGCC---
i equCab2.chr15            C 0 I 1
s cerSim1.JH767782           7113512 17 -  14545593 CTCTTCTGGGGCTTGAG---
i cerSim1.JH767782         C 0 I 1
s pteAle1.KB030580          19639054 17 -  23789964 CTCTTCTGGGGCTTGCG---
i pteAle1.KB030580         C 0 I 1
s loxAfr3.scaffold_20       28040533 17 -  46401353 TTCTTCTGGGGCCTGTG---
i loxAfr3.scaffold_20      C 0 I 1
s triMan1.JH594629          10389142 17 +  24341844 TTCTTCTGGGGCTTGTG---
i triMan1.JH594629         C 0 I 1
s dasNov3.JH567436           1555417 17 -   2788317 CTCTTCAGGAGTTAATG---
i dasNov3.JH567436         C 0 I 1
s melUnd1.JH556615           5052406 17 -  27607347 ---ATCTGTAGTTTTTGTTC
i melUnd1.JH556615         C 0 C 0
s cheMyd1.KB479743           2212039 17 +   4979691 ---ACCTTAAAGTAAATTTA
i cheMyd1.KB479743         C 0 C 0
s chrPic2.chrUn_KK088203v1   8724339 17 +  11360908 ---ACCTTAAAGTAGGTTTA
i chrPic2.chrUn_KK088203v1 C 0 C 0
s pelSin1.JH209035           1272381 17 +   2845976 ---atcttaaaataagttta
i pelSin1.JH209035         C 0 C 0
s apaSpi1.APJP01464503          3762 17 -      5020 ---ATTTAAAACCTATTTTA
i apaSpi1.APJP01464503     N 0 C 0
e monDom5.chr1             531066105 1435 + 748055161 I
e taeGut2.chr3              14004111 4794 - 112617285 I
e chlSab2.chr8              53228407 52 + 139301422 I

a score=27777.000000
s hg38.chr8_KI270814v1_alt      8190 17 +    141812 TATGGGAC-CCCTTTGTT
s panTro4.chr8              54949214 17 + 143986469 TATGGGAC-CCCTTTGTT
i panTro4.chr8             I 1 C 0
s ponAbe2.chr8              58987212 17 + 153482349 TATGGGAC-CCCTTTGTT
i ponAbe2.chr8             I 1 C 0
s nomLeu3.chr16             48079114 17 + 100215132 TATGGGAC-CCCTTTGTT
i nomLeu3.chr16            I 1 C 0
s rheMac3.chr8              61629116 17 + 150158102 TATGGGAC-CCCTTTGTT
i rheMac3.chr8             I 1 C 0
s macFas5.chr8              58301917 17 + 146850525 TATGGGAC-CCCTTTGTT
i macFas5.chr8             I 1 C 0
s chlSab2.chr8              53228459 17 + 139301422 TATGGGAC-CCCTTTGTT
i chlSab2.chr8             I 52 C 0
s calJac3.chrUn_GL286234        2045 17 +    110629 TATAGGAC-CCCTTTTGT
i calJac3.chrUn_GL286234   I 1 C 0
s saiBol1.JH378179           2734931 17 +  10880647 TATAGGAC-CCCTTTTTT
i saiBol1.JH378179         I 1 C 0
s otoGar3.GL873541          21542564  2 -  23169006 ----------------CA
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342           4215166 14 -   9676502 CATGGGAC-TGCTGC---
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907          11144438 18 +  17242564 GATGGGACTCCCTCTCTG
i orcOrc1.KB316907         I 1 C 0
s equCab2.chr15             84374818 18 +  91571448 TATGGGACTCCTTCTCCA
i equCab2.chr15            I 1 C 0
s cerSim1.JH767782           7113530 18 -  14545593 TATGGGACACCCTCTCCA
i cerSim1.JH767782         I 1 C 0
s pteAle1.KB030580          19639072 18 -  23789964 TATGGGCCTCCCCGTCCA
i pteAle1.KB030580         I 1 C 0
s loxAfr3.scaffold_20       28040551 18 -  46401353 TGTGGGACTCTCTCTTTA
i loxAfr3.scaffold_20      I 1 C 0
s triMan1.JH594629          10389160 12 +  24341844 TATGGGA------CTGTA
i triMan1.JH594629         I 1 C 0
s dasNov3.JH567436           1555435 18 -   2788317 TATGGGACTCCCTTTCCA
i dasNov3.JH567436         I 1 C 0
s melUnd1.JH556615           5052423 12 -  27607347 AT-----T-CCTGCTGTT
i melUnd1.JH556615         C 0 I 11
s cheMyd1.KB479743           2212056 14 +   4979691 AAGGTGA----TCTTGTT
i cheMyd1.KB479743         C 0 C 0
s chrPic2.chrUn_KK088203v1   8724356 17 +  11360908 AAGGAGAT-CTTCTTGTT
i chrPic2.chrUn_KK088203v1 C 0 C 0
s pelSin1.JH209035           1272398 17 +   2845976 aaagtGAT-CTTCTTGTT
i pelSin1.JH209035         C 0 C 0
s apaSpi1.APJP01464503          3779 14 -      5020 AG---GAT-CTTCTTGTT
i apaSpi1.APJP01464503     C 0 C 0
e monDom5.chr1             531066105 1435 + 748055161 I
e taeGut2.chr3              14004111 4794 - 112617285 I

a score=18143.000000
s hg38.chr8_KI270814v1_alt      8207 3 +    141812 --GGG
s panTro4.chr8              54949231 3 + 143986469 --GGG
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              58987229 3 + 153482349 --GGG
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48079131 3 + 100215132 --GGG
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8              61629133 3 + 150158102 --GGG
i rheMac3.chr8             C 0 C 0
s macFas5.chr8              58301934 3 + 146850525 --GGG
i macFas5.chr8             C 0 C 0
s chlSab2.chr8              53228476 3 + 139301422 --GGG
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234        2062 3 +    110629 --GGG
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179           2734948 3 +  10880647 --GGG
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541          21542566 3 -  23169006 --GGG
i otoGar3.GL873541         C 0 C 0
s orcOrc1.KB316907          11144456 3 +  17242564 --GGG
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15             84374836 3 +  91571448 --GGG
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782           7113548 3 -  14545593 --GAG
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580          19639090 3 -  23789964 --GGG
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20       28040569 3 -  46401353 --GTG
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629          10389172 2 +  24341844 --GT-
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436           1555453 3 -   2788317 --GGG
i dasNov3.JH567436         C 0 C 0
s melUnd1.JH556615           5052446 5 -  27607347 AAACA
i melUnd1.JH556615         I 11 C 0
s amaVit1.AOCU01175308           775 5 -      1390 GGGTT
i amaVit1.AOCU01175308     N 0 C 0
s cheMyd1.KB479743           2212070 5 +   4979691 AAGCA
i cheMyd1.KB479743         C 0 C 0
s chrPic2.chrUn_KK088203v1   8724373 5 +  11360908 AAGCG
i chrPic2.chrUn_KK088203v1 C 0 C 0
s pelSin1.JH209035           1272415 5 +   2845976 AAGAG
i pelSin1.JH209035         C 0 C 0
s apaSpi1.APJP01464503          3793 5 -      5020 AAGAG
i apaSpi1.APJP01464503     C 0 C 0
e monDom5.chr1             531066105 1435 + 748055161 I
e taeGut2.chr3              14004111 4794 - 112617285 I
e speTri2.JH393342           4215180 0 -   9676502 C

a score=26450.000000
s hg38.chr8_KI270814v1_alt      8210 5 +    141812 TGTTC
s panTro4.chr8              54949234 5 + 143986469 TGTTC
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              58987232 5 + 153482349 TGTTC
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48079134 5 + 100215132 TGTTC
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8              61629136 5 + 150158102 TGTTC
i rheMac3.chr8             C 0 C 0
s macFas5.chr8              58301937 5 + 146850525 TGTTC
i macFas5.chr8             C 0 C 0
s chlSab2.chr8              53228479 5 + 139301422 TGTTC
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234        2065 5 +    110629 TGTTC
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179           2734951 5 +  10880647 TGTTC
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541          21542569 5 -  23169006 TATTC
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342           4215180 3 -   9676502 --TCC
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907          11144459 5 +  17242564 TATCC
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15             84374839 5 +  91571448 TATTC
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782           7113551 5 -  14545593 TGTTC
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580          19639093 5 -  23789964 TGTTT
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20       28040572 5 -  46401353 TGTTT
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629          10389174 5 +  24341844 TGTTT
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436           1555456 5 -   2788317 TGTTC
i dasNov3.JH567436         C 0 C 0
s melUnd1.JH556615           5052451 3 -  27607347 TTT--
i melUnd1.JH556615         C 0 C 0
s amaVit1.AOCU01175308           780 3 -      1390 TTG--
i amaVit1.AOCU01175308     C 0 C 0
s cheMyd1.KB479743           2212075 3 +   4979691 TGT--
i cheMyd1.KB479743         C 0 I 1
s chrPic2.chrUn_KK088203v1   8724378 3 +  11360908 TGT--
i chrPic2.chrUn_KK088203v1 C 0 I 1
s pelSin1.JH209035           1272420 3 +   2845976 TGT--
i pelSin1.JH209035         C 0 I 1
s apaSpi1.APJP01464503          3798 3 -      5020 TGT--
i apaSpi1.APJP01464503     C 0 I 1
s latCha1.JH135710              5081 5 +      6215 tgttc
i latCha1.JH135710         N 0 C 0
e monDom5.chr1             531066105 1435 + 748055161 I
e taeGut2.chr3              14004111 4794 - 112617285 I

a score=105299.000000
s hg38.chr8_KI270814v1_alt      8215 10 +    141812 ACAGAATTTT
s panTro4.chr8              54949239 10 + 143986469 ACAGAATTTT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              58987237 10 + 153482349 ACAGAATTTT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48079139 10 + 100215132 ACAGAATTTT
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8              61629141 10 + 150158102 ACAGAATTTT
i rheMac3.chr8             C 0 C 0
s macFas5.chr8              58301942 10 + 146850525 ACAGAATTTT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8              53228484 10 + 139301422 ACAGAATTTT
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234        2070 10 +    110629 ACAGAATTTT
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179           2734956 10 +  10880647 ACAGAATTTT
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541          21542574 10 -  23169006 ACAGAAGTTT
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342           4215183 10 -   9676502 AGTGAATTTT
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907          11144464 10 +  17242564 ACAGAATTTT
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15             84374844 10 +  91571448 ACAGAATTTT
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782           7113556 10 -  14545593 ACAGAATTTT
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580          19639098 10 -  23789964 ATGGGATTGT
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20       28040577 10 -  46401353 GCAGAATTTT
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629          10389179 10 +  24341844 ACAGAATTTT
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436           1555461 10 -   2788317 ACAGAATTTT
i dasNov3.JH567436         C 0 C 0
s melUnd1.JH556615           5052454  8 -  27607347 --GAAACAGT
i melUnd1.JH556615         C 0 I 2
s amaVit1.AOCU01175308           783  8 -      1390 --GAAGCAGT
i amaVit1.AOCU01175308     C 0 I 2
s anaPla1.KB744685            100874 10 +    135447 ACGGAACttt
i anaPla1.KB744685         N 0 C 0
s cheMyd1.KB479743           2212079  5 +   4979691 -----ACAAC
i cheMyd1.KB479743         I 1 I 5
s chrPic2.chrUn_KK088203v1   8724382  5 +  11360908 -----ACAAC
i chrPic2.chrUn_KK088203v1 I 1 I 5
s pelSin1.JH209035           1272424  5 +   2845976 -----ACATC
i pelSin1.JH209035         I 1 I 5
s apaSpi1.APJP01464503          3802  5 -      5020 -----ACATC
i apaSpi1.APJP01464503     I 1 I 5
s latCha1.JH135710              5086 10 +      6215 acattttttt
i latCha1.JH135710         C 0 C 0
e monDom5.chr1             531066105 1435 + 748055161 I
e taeGut2.chr3              14004111 4794 - 112617285 I

a score=156689.000000
s hg38.chr8_KI270814v1_alt      8225 16 +    141812 AGGCTTT-GGAGGTTTT
s panTro4.chr8              54949249 16 + 143986469 AGGCTTT-GGAGGTTTT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              58987247 16 + 153482349 AGGCTTT-GGAGGTTTT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48079149 16 + 100215132 AGGCCTT-GGAGGTTTT
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8              61629151 16 + 150158102 AGGCTTT-GGAGGTTTT
i rheMac3.chr8             C 0 C 0
s macFas5.chr8              58301952 16 + 146850525 AGGCTTT-GGAGGTTTT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8              53228494 16 + 139301422 AGGCTTT-GGAGGTTTT
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234        2080 16 +    110629 AGGCTTT-GGAGGTTTT
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179           2734966 16 +  10880647 AGGCTTT-GGAGGtttt
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541          21542584 16 -  23169006 AGATGTT-GGAAATTTT
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342           4215193 16 -   9676502 TGGCTTT-GTAGGTTTT
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907          11144474 16 +  17242564 AGGCTTT-GGAGGTTTG
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15             84374854 16 +  91571448 AGGCTCT-GGAGGTTTG
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782           7113566 16 -  14545593 AGGCTTT-AGAGGTTTG
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580          19639108 16 -  23789964 AGGCTTT-GGAGATGCG
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20       28040587 16 -  46401353 AGACTTT-GGGGGTTCG
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629          10389189 16 +  24341844 AGACTTT-GGGGGTTTG
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436           1555471 16 -   2788317 AAGCTTT-GGGGGTTTG
i dasNov3.JH567436         C 0 C 0
s melUnd1.JH556615           5052464 15 -  27607347 -TGGAGT-TAAAATTTG
i melUnd1.JH556615         I 2 I 9
s amaVit1.AOCU01175308           793 15 -      1390 -TGGAGT-TAAAATTTG
i amaVit1.AOCU01175308     I 2 I 9
s anaPla1.KB744685            100884  4 +    135447 -------------tttt
i anaPla1.KB744685         C 0 I 15
s melGal1.chr2              16090206 16 - 116965580 ATGCATT-GTAAGTTTT
i melGal1.chr2             N 0 I 18
s cheMyd1.KB479743           2212089 17 +   4979691 ATGGATTAAAAAATCTA
i cheMyd1.KB479743         I 5 I 3
s chrPic2.chrUn_KK088203v1   8724392 16 +  11360908 ATGGCTT-AAAAATCTA
i chrPic2.chrUn_KK088203v1 I 5 I 3
s pelSin1.JH209035           1272434 16 +   2845976 ATGGATT-AAAAATCTA
i pelSin1.JH209035         I 5 I 3
s apaSpi1.APJP01464503          3812 16 -      5020 ATGGATT-AAAAATCTA
i apaSpi1.APJP01464503     I 5 I 3
s latCha1.JH135710              5096 12 +      6215 ----ttt-ttttttttt
i latCha1.JH135710         C 0 C 0
e monDom5.chr1             531066105 1435 + 748055161 I
e taeGut2.chr3              14004111 4794 - 112617285 I

a score=99950.000000
s hg38.chr8_KI270814v1_alt          8241 8 +    141812 ATTTTTTA
s panTro4.chr8                  54949265 8 + 143986469 ATTTTTTA
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  58987263 8 + 153482349 ATTTTTTA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48079165 8 + 100215132 ATTTTTTA
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                  61629167 8 + 150158102 ATTTTTTA
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58301968 8 + 146850525 ATTTTTTA
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53228510 8 + 139301422 ATTTTTTA
i chlSab2.chr8                 C 0 C 0
s calJac3.chrUn_GL286234            2096 8 +    110629 CTTTTTTA
i calJac3.chrUn_GL286234       C 0 C 0
s saiBol1.JH378179               2734982 8 +  10880647 atttttta
i saiBol1.JH378179             C 0 C 0
s otoGar3.GL873541              21542600 8 -  23169006 ACTTCATA
i otoGar3.GL873541             C 0 C 0
s speTri2.JH393342               4215209 8 -   9676502 ATTCCTTA
i speTri2.JH393342             C 0 C 0
s orcOrc1.KB316907              11144490 8 +  17242564 CTCCCTCT
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84374870 8 +  91571448 ATTCCTTA
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               7113582 8 -  14545593 ATTCCTTA
i cerSim1.JH767782             C 0 C 0
s pteAle1.KB030580              19639124 8 -  23789964 ATTTCTCA
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           28040603 8 -  46401353 ATTCCTTA
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629              10389205 8 +  24341844 ACTCCTTA
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1555487 8 -   2788317 ATTCCTTA
i dasNov3.JH567436             C 0 C 0
s sarHar1.chr1_GL834688_random   1024923 8 +   3395230 ATCTATAA
i sarHar1.chr1_GL834688_random N 0 C 0
s cheMyd1.KB479743               2212109 8 +   4979691 ATCTTTTC
i cheMyd1.KB479743             I 3 I 1
s chrPic2.chrUn_KK088203v1       8724411 8 +  11360908 ATCTTTTC
i chrPic2.chrUn_KK088203v1     I 3 I 1
s pelSin1.JH209035               1272453 8 +   2845976 ATCTTTTC
i pelSin1.JH209035             I 3 I 1
s apaSpi1.APJP01464503              3831 8 -      5020 ATCTTTTC
i apaSpi1.APJP01464503         I 3 I 1
s latCha1.JH135710                  5108 8 +      6215 ttttttta
i latCha1.JH135710             C 0 I 5
e melGal1.chr2                  16090222 18 - 116965580 I
e anaPla1.KB744685                100888 15 +    135447 I
e amaVit1.AOCU01175308               808 9 -      1390 I
e melUnd1.JH556615               5052479 9 -  27607347 I
e monDom5.chr1                 531066105 1435 + 748055161 I
e taeGut2.chr3                  14004111 4794 - 112617285 I

a score=-112363.000000
s hg38.chr8_KI270814v1_alt          8249 26 +    141812 -TTTTT---ATCTGGGAATGCTCC--------TATAAA
s panTro4.chr8                  54949273 26 + 143986469 -TTTTT---ATCTGGGAATGCTCC--------TATAAA
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  58987271 26 + 153482349 -TTTTT---ATCTGGGAATGCTCC--------TATAAA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48079173 26 + 100215132 -TTTTT---GTCTGGGAATGCTCC--------TATAAA
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                  61629175 26 + 150158102 -TTTTT---ATCTGGGAATGCTCT--------TATACA
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58301976 26 + 146850525 -TTTTT---ATCTGGGAATGCTCT--------TATACA
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53228518 26 + 139301422 -TTTTT---ATCTGGGAATGCTCT--------TATACA
i chlSab2.chr8                 C 0 C 0
s calJac3.chrUn_GL286234            2104 26 +    110629 -TTTTT---ATTTGGGAAAGCTTT--------TCTACA
i calJac3.chrUn_GL286234       C 0 C 0
s saiBol1.JH378179               2734990 26 +  10880647 -ttttt---atttGGGAAAGCTCT--------TATACA
i saiBol1.JH378179             C 0 C 0
s otoGar3.GL873541              21542608 34 -  23169006 -TTTTT---ATATGGCGATGTTCTATATTGTACATAAG
i otoGar3.GL873541             C 0 C 0
s speTri2.JH393342               4215217 37 -   9676502 -TTTTTTTAATCTGGGAATGTTCTGGGTTCTGTCTAAG
i speTri2.JH393342             C 0 C 0
s orcOrc1.KB316907              11144498 34 +  17242564 -TTTTT---ATCTGGCAGTGTCGTGTGTTATATATAAG
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84374878 36 +  91571448 -TTTTTTT-ACCTGGGAATGTTCTGTGTTATACATAAG
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               7113590 36 -  14545593 -TTTTTTC-ACCTGGGGAAGTTCTGTGTTATACATAAG
i cerSim1.JH767782             C 0 C 0
s pteAle1.KB030580              19639132 35 -  23789964 -TTCTGT--ATCTGGGATTGTTCTGTGTTCCGCTTAAA
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           28040611 35 -  46401353 -TTTTTC--ATCTGGGAATTTTCTCTGTTACATATAAG
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629              10389213 35 +  24341844 -TTTTTC--ATCTGGGAATTTTCTATGTTACATATAAG
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1555495 34 -   2788317 -TTTTTT--AACTGGAAATTTTCTGTGTTACACAT-TG
i dasNov3.JH567436             C 0 C 0
s sarHar1.chr1_GL834688_random   1024931 25 +   3395230 -TTTTCA--GTTTCAGAATgca----------tattaa
i sarHar1.chr1_GL834688_random C 0 I 4
s geoFor1.JH739908               7232427 24 +   8423346 -ttggg---agCAGGGGTGGCT----------TTAAAC
i geoFor1.JH739908             N 0 I 7
s melUnd1.JH556615               5052488  3 -  27607347 -----------------------------------AAT
i melUnd1.JH556615             I 9 I 2
s amaVit1.AOCU01175308               817  3 -      1390 -----------------------------------AAT
i amaVit1.AOCU01175308         I 9 I 2
s anaPla1.KB744685                100903 25 +    135447 -TTAGA---TTTTGACAAGTCtt---------cttaat
i anaPla1.KB744685             I 15 I 2
s galGal4.chr3                  14861319 25 - 110447801 -TTATA---ATTTGAGAAGGCCC---------TTCAAA
i galGal4.chr3                 N 0 I 2
s melGal1.chr2                  16090240 25 - 116965580 -TTAGA---ACTGGAGAAGCCTC---------CTCAAG
i melGal1.chr2                 I 18 I 2
s cheMyd1.KB479743               2212118 16 +   4979691 -TTTCA---AGTAAGG-A-----------------AAA
i cheMyd1.KB479743             I 1 I 2
s chrPic2.chrUn_KK088203v1       8724420 16 +  11360908 -TTTCA---AGTAAGG-A-----------------AAA
i chrPic2.chrUn_KK088203v1     I 1 I 2
s pelSin1.JH209035               1272462 17 +   2845976 -TTTCA---AGCAAGGAA-----------------AAA
i pelSin1.JH209035             I 1 I 2
s apaSpi1.APJP01464503              3840 17 -      5020 -TTCCA---AGCAAGGAA-----------------AAA
i apaSpi1.APJP01464503         I 1 I 2
s latCha1.JH135710                  5121 21 +      6215 tttcta---aaTAGGAATTGTTAC--------------
i latCha1.JH135710             I 5 C 0
e monDom5.chr1                 531066105 1435 + 748055161 I
e taeGut2.chr3                  14004111 4794 - 112617285 I

a score=-25563.000000
s hg38.chr8_KI270814v1_alt          8275 8 +    141812 TATTCTTT
s panTro4.chr8                  54949299 8 + 143986469 TATTCTTT
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  58987297 8 + 153482349 TATTCTTT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48079199 8 + 100215132 TATTCTTT
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                  61629201 8 + 150158102 TATTTTTT
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58302002 8 + 146850525 TATTTTTT
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53228544 8 + 139301422 TGATTTTT
i chlSab2.chr8                 C 0 C 0
s calJac3.chrUn_GL286234            2130 8 +    110629 TATTTTAT
i calJac3.chrUn_GL286234       C 0 C 0
s saiBol1.JH378179               2735016 8 +  10880647 TCTTTAAG
i saiBol1.JH378179             C 0 C 0
s otoGar3.GL873541              21542642 8 -  23169006 TACTTTTT
i otoGar3.GL873541             C 0 C 0
s speTri2.JH393342               4215254 8 -   9676502 TATTTGTT
i speTri2.JH393342             C 0 C 0
s orcOrc1.KB316907              11144532 8 +  17242564 CACTTTTT
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84374914 8 +  91571448 CACTTTTT
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               7113626 8 -  14545593 CACTTTTT
i cerSim1.JH767782             C 0 C 0
s pteAle1.KB030580              19639167 8 -  23789964 CACTTTGC
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           28040646 8 -  46401353 CAATTTTT
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629              10389248 8 +  24341844 CAATTTTT
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1555529 8 -   2788317 CACTTTTT
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 531067540 8 + 748055161 TATTTTTC
i monDom5.chr1                 I 1435 C 0
s sarHar1.chr1_GL834688_random   1024960 8 +   3395230 tttttttt
i sarHar1.chr1_GL834688_random I 4 C 0
s geoFor1.JH739908               7232458 6 +   8423346 CTCTTT--
i geoFor1.JH739908             I 7 I 21
s melUnd1.JH556615               5052493 6 -  27607347 cacatt--
i melUnd1.JH556615             I 2 I 18
s amaVit1.AOCU01175308               822 6 -      1390 cacatt--
i amaVit1.AOCU01175308         I 2 I 18
s anaPla1.KB744685                100930 6 +    135447 tacatt--
i anaPla1.KB744685             I 2 C 0
s galGal4.chr3                  14861346 6 - 110447801 AAcact--
i galGal4.chr3                 I 2 C 0
s melGal1.chr2                  16090267 6 - 116965580 AACATT--
i melGal1.chr2                 I 2 C 0
s cheMyd1.KB479743               2212136 6 +   4979691 TATGTA--
i cheMyd1.KB479743             I 2 I 6
s chrPic2.chrUn_KK088203v1       8724438 6 +  11360908 TATATA--
i chrPic2.chrUn_KK088203v1     I 2 I 6
s pelSin1.JH209035               1272481 6 +   2845976 TACATA--
i pelSin1.JH209035             I 2 I 6
s apaSpi1.APJP01464503              3859 6 -      5020 TACATA--
i apaSpi1.APJP01464503         I 2 I 6
s latCha1.JH135710                  5142 8 +      6215 CATCCTGA
i latCha1.JH135710             C 0 C 0
e taeGut2.chr3                  14004111 4794 - 112617285 I

a score=-57854.000000
s hg38.chr8_KI270814v1_alt          8283 16 +    141812 AGC---------------CTAAATCATT--------AAC
s panTro4.chr8                  54949307 16 + 143986469 AGC---------------CTAAATCATT--------AAC
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  58987305 16 + 153482349 AGC---------------CTAAATCATT--------AAC
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48079207 16 + 100215132 AGC---------------CTAAATCATT--------AAC
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                  61629209 16 + 150158102 AGC---------------CTAAATCATT--------AAC
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58302010 16 + 146850525 AGC---------------CTAAATCATT--------AAC
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53228552 16 + 139301422 AGC---------------CTAAATCATT--------AAC
i chlSab2.chr8                 C 0 C 0
s calJac3.chrUn_GL286234            2138 18 +    110629 AGC---------------CTAAATCATT------TCAAC
i calJac3.chrUn_GL286234       C 0 C 0
s saiBol1.JH378179               2735024 18 +  10880647 AGC---------------CTAAATCATT------TCTAC
i saiBol1.JH378179             C 0 C 0
s otoGar3.GL873541              21542650 16 -  23169006 AGC---------------CTAAAATGGT--------GGC
i otoGar3.GL873541             C 0 C 0
s speTri2.JH393342               4215262 18 -   9676502 AGC---------------TTAAGTTATT------TGAGC
i speTri2.JH393342             C 0 C 0
s orcOrc1.KB316907              11144540 18 +  17242564 AGC---------------CTGAATTATT------TCAGT
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84374922 18 +  91571448 AGC---------------CTGAATTGTT------TTGAC
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               7113634 18 -  14545593 ATC---------------CTAAAGTGTT------TTAAC
i cerSim1.JH767782             C 0 C 0
s pteAle1.KB030580              19639175 18 -  23789964 AGC---------------CTAAATTGTC------TCACC
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           28040654 18 -  46401353 AGC---------------CTAACTTTTT------TCAAT
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629              10389256 18 +  24341844 AGT---------------CTAACTTTTT------TCAGT
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1555537 18 -   2788317 AGC---------------TTAAGTTTTT------GCAGC
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 531067548 10 + 748055161 AGTTG-------------CAAAA----------------
i monDom5.chr1                 C 0 I 7
s sarHar1.chr1_GL834688_random   1024968 10 +   3395230 gaatg-------------ttaac----------------
i sarHar1.chr1_GL834688_random C 0 C 0
s anaPla1.KB744685                100936 14 +    135447 --------------------aaataaataaatac-----
i anaPla1.KB744685             C 0 C 0
s galGal4.chr3                  14861352 13 - 110447801 --------------------aagtaaataaata------
i galGal4.chr3                 C 0 C 0
s melGal1.chr2                  16090273 13 - 116965580 --------------------AAATAAATAAATA------
i melGal1.chr2                 C 0 C 0
s latCha1.JH135710                  5150 25 +      6215 ---TGataaaataatgcactgcagTATC-----------
i latCha1.JH135710             C 0 C 0
e geoFor1.JH739908               7232464 21 +   8423346 I
e amaVit1.AOCU01175308               828 18 -      1390 I
e apaSpi1.APJP01464503              3865  6 -      5020 I
e cheMyd1.KB479743               2212142  6 +   4979691 I
e chrPic2.chrUn_KK088203v1       8724444  6 +  11360908 I
e pelSin1.JH209035               1272487  6 +   2845976 I
e melUnd1.JH556615               5052499 18 -  27607347 I
e taeGut2.chr3                  14004111 4794 - 112617285 I

a score=97131.000000
s hg38.chr8_KI270814v1_alt          8299 9 +    141812 TTGATGTTT
s panTro4.chr8                  54949323 9 + 143986469 TTGATGTTT
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  58987321 9 + 153482349 TTGATGTTT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48079223 9 + 100215132 TTGATGTTT
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                  61629225 9 + 150158102 TTGATGTTT
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58302026 9 + 146850525 TTGATGTTT
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53228568 9 + 139301422 TTGATGTTT
i chlSab2.chr8                 C 0 C 0
s calJac3.chrUn_GL286234            2156 9 +    110629 TTGATGTTT
i calJac3.chrUn_GL286234       C 0 C 0
s saiBol1.JH378179               2735042 9 +  10880647 TTGATGTTT
i saiBol1.JH378179             C 0 C 0
s otoGar3.GL873541              21542666 4 -  23169006 TAAA-----
i otoGar3.GL873541             C 0 C 0
s speTri2.JH393342               4215280 9 -   9676502 TCGATGTCT
i speTri2.JH393342             C 0 C 0
s orcOrc1.KB316907              11144558 9 +  17242564 TTGATGTTT
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84374940 9 +  91571448 TTGATGTTT
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               7113652 9 -  14545593 TTGATGTTT
i cerSim1.JH767782             C 0 C 0
s pteAle1.KB030580              19639193 9 -  23789964 TCGAAGTTT
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           28040672 9 -  46401353 TTAATGTTT
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629              10389274 9 +  24341844 TTGATGTTT
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1555555 9 -   2788317 ATGGTGTGT
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 531067565 9 + 748055161 TGGATGTTT
i monDom5.chr1                 I 7 C 0
s macEug2.GL057408                  3640 9 -     17528 TTGATGTTT
i macEug2.GL057408             N 0 C 0
s falChe1.KB397350               1850215 5 -   3649919 ----agctt
i falChe1.KB397350             N 0 I 5
s falPer1.KB390952               2896933 5 -  18327016 ----agctt
i falPer1.KB390952             N 0 I 5
s geoFor1.JH739908               7232485 5 +   8423346 ----AGTTG
i geoFor1.JH739908             I 21 I 6
s melUnd1.JH556615               5052517 5 -  27607347 ----agttt
i melUnd1.JH556615             I 18 I 6
s amaVit1.AOCU01175308               846 5 -      1390 ----tgttt
i amaVit1.AOCU01175308         I 18 I 6
s anaPla1.KB744685                100950 9 +    135447 atgtggTTT
i anaPla1.KB744685             C 0 I 6
s galGal4.chr3                  14861365 9 - 110447801 atgtggTTG
i galGal4.chr3                 C 0 I 6
s melGal1.chr2                  16090286 9 - 116965580 ATGTAGTTG
i melGal1.chr2                 C 0 I 6
s cheMyd1.KB479743               2212148 9 +   4979691 AGACTGTTA
i cheMyd1.KB479743             I 6 I 14
s chrPic2.chrUn_KK088203v1       8724450 9 +  11360908 AGACTGTTG
i chrPic2.chrUn_KK088203v1     I 6 I 14
s pelSin1.JH209035               1272493 9 +   2845976 AAACTGCTG
i pelSin1.JH209035             I 6 I 14
s apaSpi1.APJP01464503              3871 9 -      5020 AAACTGTTG
i apaSpi1.APJP01464503         I 6 I 14
s latCha1.JH135710                  5175 9 +      6215 TCAACACCC
i latCha1.JH135710             C 0 C 0
e sarHar1.chr1_GL834688_random   1024978 0 +   3395230 C
e taeGut2.chr3                  14004111 4794 - 112617285 I

a score=-170952.000000
s hg38.chr8_KI270814v1_alt          8308 22 +    141812 GTGACTGGGT--ATCTCTCTTCTA
s panTro4.chr8                  54949332 22 + 143986469 GTGACTGGGT--ATCTCTCTTCTA
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  58987330 22 + 153482349 GTGACTGGGT--ATCTCTCTTCTA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48079232 22 + 100215132 GTGACTGGGT--GTCTGTCTTCTA
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                  61629234 22 + 150158102 GTGACTGGGT--ATCTCTCTTCTA
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58302035 22 + 146850525 GTGACTGGGT--ATCTCTCTTCTA
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53228577 22 + 139301422 GTGACTGGGT--ATCTCTCTTCTA
i chlSab2.chr8                 C 0 C 0
s calJac3.chrUn_GL286234            2165 22 +    110629 GTGACCGGGT--GTGTCTCTTCTA
i calJac3.chrUn_GL286234       C 0 C 0
s saiBol1.JH378179               2735051 22 +  10880647 GTGACTGGGC--ATGTCTCTTCTA
i saiBol1.JH378179             C 0 C 0
s otoGar3.GL873541              21542670 14 -  23169006 ATGAGGAGGC----------TCTA
i otoGar3.GL873541             C 0 C 0
s speTri2.JH393342               4215289 13 -   9676502 GTGACT-----------TCTTCTA
i speTri2.JH393342             C 0 C 0
s orcOrc1.KB316907              11144567 17 +  17242564 GTGCGTGGGC--T-----CTTCTA
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84374949 22 +  91571448 GTGAATGGGC--ATGTTTCTTCTC
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               7113661 22 -  14545593 GTGAATGAGC--GTCTTTCTTCTA
i cerSim1.JH767782             C 0 C 0
s pteAle1.KB030580              19639202 17 -  23789964 GCGAATGGGC--A-----CTCCTA
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           28040681 22 -  46401353 GTGAACAGAT--GCTACCCTTCTA
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629              10389283 22 +  24341844 ATGGATCGAT--ATCGCTCTTCTA
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1555564 19 -   2788317 GTGAATGGGT--AT---CCTTCTA
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 531067574 24 + 748055161 TTGAATGTTAACTTTGTTCTTCTA
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random   1024978 12 +   3395230 ------------tttgttcttcta
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL057408                  3649 17 -     17528 TTGAA-------TTTGCTCTTTCA
i macEug2.GL057408             C 0 C 0
s falChe1.KB397350               1850225 19 -   3649919 attaatgaaa--attctgtga---
i falChe1.KB397350             I 5 I 11
s falPer1.KB390952               2896943 19 -  18327016 attaatgaaa--attctgtga---
i falPer1.KB390952             I 5 I 11
s geoFor1.JH739908               7232496 19 +   8423346 ATTGAAGAGA--ATGCTATGA---
i geoFor1.JH739908             I 6 I 6
s melUnd1.JH556615               5052528 19 -  27607347 attaatgaaa--atgctGTGA---
i melUnd1.JH556615             I 6 I 28
s amaVit1.AOCU01175308               857 19 -      1390 attaatgaaa--atgctgtga---
i amaVit1.AOCU01175308         I 6 I 26
s anaPla1.KB744685                100965 19 +    135447 ATTAATAGAA--ATGCATtga---
i anaPla1.KB744685             I 6 I 4
s galGal4.chr3                  14861380 19 - 110447801 ATTAATGAAA--ATGCCTtga---
i galGal4.chr3                 I 6 I 4
s melGal1.chr2                  16090301 19 - 116965580 ATTAATGAAA--ATGCCTTGA---
i melGal1.chr2                 I 6 I 4
s allMis1.JH736069                100115 19 -    290924 ACTATTTATA--CTTTTTTTT---
i allMis1.JH736069             N 0 I 2
s cheMyd1.KB479743               2212171 17 +   4979691 -TTGCCTGGA--GTGAC-TAT---
i cheMyd1.KB479743             I 14 I 4
s chrPic2.chrUn_KK088203v1       8724473 17 +  11360908 -TTGCCTGGA--GTGAC-TAT---
i chrPic2.chrUn_KK088203v1     I 14 I 4
s pelSin1.JH209035               1272516 18 +   2845976 -TTTACTGGA--TTGACTTCT---
i pelSin1.JH209035             I 14 I 4
s apaSpi1.APJP01464503              3894 18 -      5020 -TTTATTGGA--TTGACTTAT---
i apaSpi1.APJP01464503         I 14 I 4
s latCha1.JH135710                  5184 21 +      6215 ATTAACGCGA--CTCTTCCCTcc-
i latCha1.JH135710             C 0 C 0
e taeGut2.chr3                  14004111 4794 - 112617285 I

a score=33393.000000
s hg38.chr8_KI270814v1_alt          8330 2 +    141812 AT
s panTro4.chr8                  54949354 2 + 143986469 AT
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  58987352 2 + 153482349 AT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48079254 2 + 100215132 AT
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                  61629256 2 + 150158102 AT
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58302057 2 + 146850525 AT
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53228599 2 + 139301422 AT
i chlSab2.chr8                 C 0 C 0
s calJac3.chrUn_GL286234            2187 2 +    110629 AT
i calJac3.chrUn_GL286234       C 0 C 0
s saiBol1.JH378179               2735073 2 +  10880647 AT
i saiBol1.JH378179             C 0 C 0
s otoGar3.GL873541              21542684 2 -  23169006 AC
i otoGar3.GL873541             C 0 C 0
s speTri2.JH393342               4215302 2 -   9676502 AC
i speTri2.JH393342             C 0 C 0
s orcOrc1.KB316907              11144584 2 +  17242564 AC
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84374971 2 +  91571448 AC
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               7113683 2 -  14545593 AC
i cerSim1.JH767782             C 0 C 0
s pteAle1.KB030580              19639219 2 -  23789964 AC
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           28040703 2 -  46401353 AC
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629              10389305 2 +  24341844 AC
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1555583 2 -   2788317 AC
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 531067598 2 + 748055161 AC
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random   1024990 2 +   3395230 at
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL057408                  3666 2 -     17528 AC
i macEug2.GL057408             C 0 C 0
s colLiv1.KB375528               6007081 1 -  25666195 -t
i colLiv1.KB375528             N 0 I 4
s anaPla1.KB744685                100988 2 +    135447 tt
i anaPla1.KB744685             I 4 I 3
s galGal4.chr3                  14861403 1 - 110447801 -t
i galGal4.chr3                 I 4 I 3
s melGal1.chr2                  16090324 1 - 116965580 -T
i melGal1.chr2                 I 4 I 3
s allMis1.JH736069                100136 2 -    290924 TT
i allMis1.JH736069             I 2 C 0
s cheMyd1.KB479743               2212192 2 +   4979691 AT
i cheMyd1.KB479743             I 4 C 0
s chrPic2.chrUn_KK088203v1       8724494 2 +  11360908 AT
i chrPic2.chrUn_KK088203v1     I 4 C 0
s pelSin1.JH209035               1272538 2 +   2845976 AT
i pelSin1.JH209035             I 4 C 0
s apaSpi1.APJP01464503              3916 2 -      5020 AT
i apaSpi1.APJP01464503         I 4 C 0
e falPer1.KB390952               2896962 11 -  18327016 I
e falChe1.KB397350               1850244 11 -   3649919 I
e geoFor1.JH739908               7232515 6 +   8423346 I
e latCha1.JH135710                  5205 0 +      6215 C
e amaVit1.AOCU01175308               876 26 -      1390 I
e melUnd1.JH556615               5052547 28 -  27607347 I
e taeGut2.chr3                  14004111 4794 - 112617285 I

a score=8892.000000
s hg38.chr8_KI270814v1_alt          8332 2 +    141812 TG
s panTro4.chr8                  54949356 2 + 143986469 TG
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  58987354 2 + 153482349 TG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48079256 2 + 100215132 TG
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                  61629258 2 + 150158102 TG
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58302059 2 + 146850525 TG
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53228601 2 + 139301422 TG
i chlSab2.chr8                 C 0 C 0
s calJac3.chrUn_GL286234            2189 2 +    110629 AG
i calJac3.chrUn_GL286234       C 0 C 0
s saiBol1.JH378179               2735075 2 +  10880647 AG
i saiBol1.JH378179             C 0 C 0
s otoGar3.GL873541              21542686 2 -  23169006 AG
i otoGar3.GL873541             C 0 C 0
s speTri2.JH393342               4215304 2 -   9676502 AG
i speTri2.JH393342             C 0 C 0
s orcOrc1.KB316907              11144586 2 +  17242564 AG
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84374973 2 +  91571448 AA
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               7113685 2 -  14545593 AA
i cerSim1.JH767782             C 0 C 0
s pteAle1.KB030580              19639221 2 -  23789964 AG
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           28040705 2 -  46401353 AA
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629              10389307 2 +  24341844 AG
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1555585 2 -   2788317 AA
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 531067600 2 + 748055161 AG
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random   1024992 2 +   3395230 tg
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL057408                  3668 2 -     17528 AG
i macEug2.GL057408             C 0 C 0
e colLiv1.KB375528               6007082 4 -  25666195 I
e allMis1.JH736069                100138 0 -    290924 C
e falPer1.KB390952               2896962 11 -  18327016 I
e falChe1.KB397350               1850244 11 -   3649919 I
e galGal4.chr3                  14861404 3 - 110447801 I
e geoFor1.JH739908               7232515 6 +   8423346 I
e melGal1.chr2                  16090325 3 - 116965580 I
e anaPla1.KB744685                100990 3 +    135447 I
e latCha1.JH135710                  5205 0 +      6215 C
e amaVit1.AOCU01175308               876 26 -      1390 I
e apaSpi1.APJP01464503              3918 0 -      5020 C
e cheMyd1.KB479743               2212194 0 +   4979691 C
e chrPic2.chrUn_KK088203v1       8724496 0 +  11360908 C
e pelSin1.JH209035               1272540 0 +   2845976 C
e melUnd1.JH556615               5052547 28 -  27607347 I
e taeGut2.chr3                  14004111 4794 - 112617285 I

a score=-145758.000000
s hg38.chr8_KI270814v1_alt          8334 3 +    141812 T------G--C
s panTro4.chr8                  54949358 3 + 143986469 T------G--C
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  58987356 5 + 153482349 T------GCTC
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48079258 5 + 100215132 T------GCTC
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                  61629260 5 + 150158102 T------GCTC
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58302061 5 + 146850525 T------GCTC
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53228603 5 + 139301422 T------GCTC
i chlSab2.chr8                 C 0 C 0
s calJac3.chrUn_GL286234            2191 5 +    110629 T------GTTC
i calJac3.chrUn_GL286234       C 0 C 0
s saiBol1.JH378179               2735077 5 +  10880647 T------GTTC
i saiBol1.JH378179             C 0 C 0
s otoGar3.GL873541              21542688 5 -  23169006 T------GTTC
i otoGar3.GL873541             C 0 C 0
s speTri2.JH393342               4215306 5 -   9676502 G------ACTC
i speTri2.JH393342             C 0 C 0
s orcOrc1.KB316907              11144588 5 +  17242564 T------GTTC
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84374975 5 +  91571448 T------GCTC
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               7113687 5 -  14545593 T------GCTG
i cerSim1.JH767782             C 0 C 0
s pteAle1.KB030580              19639223 5 -  23789964 C------GCTC
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           28040707 5 -  46401353 T------GTTC
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629              10389309 5 +  24341844 T------GCTC
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1555587 5 -   2788317 T------GCTC
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 531067602 5 + 748055161 T------TGCC
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random   1024994 5 +   3395230 t------tatt
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL057408                  3670 5 -     17528 T------TACT
i macEug2.GL057408             C 0 C 0
s colLiv1.KB375528               6007086 1 -  25666195 t----------
i colLiv1.KB375528             I 4 C 0
s falChe1.KB397350               1850255 1 -   3649919 t----------
i falChe1.KB397350             I 11 I 1
s falPer1.KB390952               2896973 1 -  18327016 t----------
i falPer1.KB390952             I 11 I 1
s zonAlb1.KB913084               1452135 1 +   4964275 t----------
i zonAlb1.KB913084             N 0 I 4
s geoFor1.JH739908               7232521 1 +   8423346 t----------
i geoFor1.JH739908             I 6 I 4
s pseHum1.KB221199               9565490 1 +  17335395 t----------
i pseHum1.KB221199             N 0 I 2
s melUnd1.JH556615               5052575 1 -  27607347 t----------
i melUnd1.JH556615             I 28 C 0
s amaVit1.AOCU01175308               902 1 -      1390 t----------
i amaVit1.AOCU01175308         I 26 C 0
s anaPla1.KB744685                100993 1 +    135447 t----------
i anaPla1.KB744685             I 3 C 0
s galGal4.chr3                  14861407 1 - 110447801 t----------
i galGal4.chr3                 I 3 C 0
s melGal1.chr2                  16090328 1 - 116965580 T----------
i melGal1.chr2                 I 3 C 0
s allMis1.JH736069                100138 5 -    290924 TCCCC------
i allMis1.JH736069             C 0 C 0
s anoCar2.chr1                 148794682 3 + 263920458 T----GC----
i anoCar2.chr1                 N 0 C 0
s latCha1.JH135710                  5205 2 +      6215 ---------tc
i latCha1.JH135710             C 0 C 0
e apaSpi1.APJP01464503              3918 0 -      5020 C
e cheMyd1.KB479743               2212194 0 +   4979691 C
e chrPic2.chrUn_KK088203v1       8724496 0 +  11360908 C
e pelSin1.JH209035               1272540 0 +   2845976 C
e taeGut2.chr3                  14004111 4794 - 112617285 I

a score=-10032.000000
s hg38.chr8_KI270814v1_alt          8337 10 +    141812 TTT-C-TTT-TT---A----
s panTro4.chr8                  54949361 10 + 143986469 TTT-C-TTT-TT---A----
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  58987361 10 + 153482349 TTT-C-TTT-TT---A----
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48079263 10 + 100215132 TTC-C-TTT-TT---A----
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                  61629265 10 + 150158102 TTT-C-TTT-TT---A----
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58302066 10 + 146850525 TTT-C-TTT-TT---A----
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53228608 10 + 139301422 TTT-C-TTT-TT---A----
i chlSab2.chr8                 C 0 C 0
s calJac3.chrUn_GL286234            2196 10 +    110629 TTT-C-TTT-TT---A----
i calJac3.chrUn_GL286234       C 0 C 0
s saiBol1.JH378179               2735082 10 +  10880647 TTT-C-TTT-TT---A----
i saiBol1.JH378179             C 0 C 0
s otoGar3.GL873541              21542693 10 -  23169006 TTA-C-TTT-TT---A----
i otoGar3.GL873541             C 0 C 0
s speTri2.JH393342               4215311 11 -   9676502 TTA-C-TTTGTT---A----
i speTri2.JH393342             C 0 C 0
s orcOrc1.KB316907              11144593 10 +  17242564 TTA-C-TTT-TC---A----
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84374980 11 +  91571448 TTA-CTTTT-TT---A----
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               7113692 10 -  14545593 TCA-C-TTT-TT---A----
i cerSim1.JH767782             C 0 C 0
s pteAle1.KB030580              19639228 10 -  23789964 TCA-C-TTT-TT---A----
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           28040712 10 -  46401353 TTA-A-TTT-TT---A----
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629              10389314 10 +  24341844 TTA-A-TTT-TT---A----
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1555592 10 -   2788317 TTA-C-TTT-TT---A----
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 531067607 10 + 748055161 TTG-C-TTT-TT---G----
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random   1024999 11 +   3395230 ttatt-ttt-tt---a----
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL057408                  3675 10 -     17528 TTG-T-TTT-TT---A----
i macEug2.GL057408             C 0 C 0
s colLiv1.KB375528               6007087  6 -  25666195 ------ttt-tt---c----
i colLiv1.KB375528             C 0 I 4
s falChe1.KB397350               1850257  5 -   3649919 -------tt-tt---t----
i falChe1.KB397350             I 1 I 4
s falPer1.KB390952               2896975  5 -  18327016 -------tt-tt---t----
i falPer1.KB390952             I 1 I 4
s zonAlb1.KB913084               1452140  6 +   4964275 ------ttt-tt---c----
i zonAlb1.KB913084             I 4 I 4
s geoFor1.JH739908               7232526  9 +   8423346 ------ttt-ttttcc----
i geoFor1.JH739908             I 4 I 4
s taeGut2.chr3                  14008905  6 - 112617285 ------TTT-CC---C----
i taeGut2.chr3                 I 4794 I 4
s pseHum1.KB221199               9565493  6 +  17335395 ------ttt-tt---t----
i pseHum1.KB221199             I 2 I 7
s melUnd1.JH556615               5052576  6 -  27607347 ------ttt-ct---t----
i melUnd1.JH556615             C 0 I 4
s amaVit1.AOCU01175308               903  6 -      1390 ------ttt-ct---t----
i amaVit1.AOCU01175308         C 0 I 4
s anaPla1.KB744685                100994  6 +    135447 ------ttt-tt---c----
i anaPla1.KB744685             C 0 I 4
s galGal4.chr3                  14861408  6 - 110447801 ------ttt-tt---c----
i galGal4.chr3                 C 0 I 4
s melGal1.chr2                  16090329  6 - 116965580 ------TTT-TT---C----
i melGal1.chr2                 C 0 I 4
s allMis1.JH736069                100143  6 -    290924 ------CCC-CT---C----
i allMis1.JH736069             C 0 I 4
s cheMyd1.KB479743               2212194  6 +   4979691 ------TTT-TT---C----
i cheMyd1.KB479743             C 0 C 0
s chrPic2.chrUn_KK088203v1       8724496  6 +  11360908 ------TTT-TT---C----
i chrPic2.chrUn_KK088203v1     C 0 C 0
s pelSin1.JH209035               1272540  6 +   2845976 ------TTT-TC---C----
i pelSin1.JH209035             C 0 C 0
s apaSpi1.APJP01464503              3918  6 -      5020 ------TTT-TT---C----
i apaSpi1.APJP01464503         C 0 C 0
s anoCar2.chr1                 148794685  5 + 263920458 -------TT-TT---C----
i anoCar2.chr1                 C 0 I 5
s latCha1.JH135710                  5207 10 +      6215 ------ttt-tt---gttta
i latCha1.JH135710             C 0 I 3

a score=5244638.000000
s hg38.chr8_KI270814v1_alt          8347 84 +    141812 CAGGCATGCCTTACATTTTCTTGTACAAAGTGGAATTTCCTACTGTATCATGATCC--------TAATAGGAGTGGAGAACATATA----TAAGTA
s panTro4.chr8                  54949371 84 + 143986469 CAGGCATGCCTTACATTTTCTTGTACAAAGTGGAATTTCCTACTGTATCATGATCC--------TAATAGGAGTGGAGAACATATA----TAAGTA
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  58987371 84 + 153482349 CAGGCATGCCTTACATTTTCTTGTACAAAGTGGAATTTCCTACTGTATCATGATCC--------TAATAGGAGTGGAGAACATATA----TAAGTA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48079273 84 + 100215132 CAGGCATGCCTTACATTTTCTTGTACAAAGTGGAATTTCCTGCTGTATCATGATCC--------TAATAGGAGTGGAGAACATATG----TAAGTA
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                  61629275 84 + 150158102 CAGTCATGCCTTACATTTTCTTGTACAAAGTGGAATTTCCTACTGCATCATGATCC--------TAATAGGAGTGGAGAACATATA----CAACTA
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58302076 84 + 146850525 CAGTCATGCCTTACATTTTCTTGTACAAAGTGGAATTTCCTACTGCATCATGATCC--------TAATAGGAGTGGAGAACATATA----CAACTA
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53228618 84 + 139301422 CAGTCATGACTTACATTTTCTTGTACAAAGTGGAATTTCTTACTGTATCATGATCC--------TAATAGGAGTGGAGAACATATA----CAACTG
i chlSab2.chr8                 C 0 C 0
s calJac3.chrUn_GL286234            2206 88 +    110629 TAGGCATGCCATACATTTTCTTGTACAAAGTGGAATTTCCTGCTGTATCGTAATCC--------TAATAGGAGTGGAGAACATATACAGGTAAGTA
i calJac3.chrUn_GL286234       C 0 C 0
s saiBol1.JH378179               2735092 88 +  10880647 TAGGCATGCCTTACATTTTCTTGTACAAAGTGGAATTTCCTACTTTATCATAATCC--------TAATAGGAGTGGAGAACATATACAGGTAAGTG
i saiBol1.JH378179             C 0 C 0
s otoGar3.GL873541              21542703 84 -  23169006 CAGGTATGCCTTACATTTTCTTGTACAAAGTGGAGTTTCCTACTGTATCATGATTA--------TAATAGGAGTGGAGAACATGCA----CAAGTA
i otoGar3.GL873541             C 0 C 0
s speTri2.JH393342               4215322 84 -   9676502 CAGGTATGCCTTACATTTTCTTGTGCAAAGTGGGATTTCCTACTGCATTATGATCA--------TAATAGGAGTGGAGAGCATGCA----CAAGTG
i speTri2.JH393342             C 0 C 0
s orcOrc1.KB316907              11144603 88 +  17242564 CAGGTATGCCTTACATTTTCTTGTACAAAGTGGAATTTCCTACTGCATCATGATCA--------TAATAGGAGTGGAGAACATGCACAAGTAAGTG
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84374991 88 +  91571448 TAGGTATGCCTTACATTTTCTTGTACAAAGTGGAATTTCCTACTGTATCATGATCA--------TAATAGGAGTGGAGAACATGCACACGTAAGTG
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               7113702 88 -  14545593 TAGGTATGCCTTACATTTTCTGGTACAAAGTGGAATTTCCTACTGTATCATGATCA--------TAATAGGAGCGGAGAACATGCACAAGTAAGTG
i cerSim1.JH767782             C 0 C 0
s pteAle1.KB030580              19639238 88 -  23789964 TAGGTATGCCTTACATTTTCTCGTACAAACCGGAATCTCCTACTGTATCATGATCA--------TTATAGGAGTGGAGAACGTGCACAAGTAAGTG
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           28040722 88 -  46401353 TAGGTATGCCTTACATTTTCTTGTACAAAGTGGAATTTCCTACTGTATCATGATCA--------TAATAGGAGTGGAAAACATGCACAAGTAAGTA
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629              10389324 88 +  24341844 TAGGTATGCCTTACATTTTCTTGTACAAAGTGGAATTTCCTACTGTATCATGATCA--------TAATAGGAGTGGAAAACATGCACAAGTAAGTA
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1555602 88 -   2788317 TAGGTATGCCTTACATTTTCTTGTACAAAGTGGAATTTCCTATTGTATCATGATCA--------TAATAGGAGTAGAAAACATGCACAAGTAAGTA
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 531067617 88 + 748055161 TAGGTATGCCTTACATTTTCTTGTACAAAGTGGAATTTCATACTCTATCATGATCA--------TAATAGGAGTTGAAAATATGCACAAGTAAGTA
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random   1025010 86 +   3395230 taggtATGCCTTACATTTTCTTGTACAAAGTGGAATTTCatactatatcatgatca--------taATAGGAGTTGAAAATATGCACAAGTAAg--
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL057408                  3685 88 -     17528 CAGGTATGCCTTACATTTTCTTGTACAAAGTGGAATTTCATACTATATCATGATAA--------TAATAGGAGTTGAAAATATGCACAAGTAAGTA
i macEug2.GL057408             C 0 C 0
s colLiv1.KB375528               6007097 84 -  25666195 taggtATGCCTTACATTTTGTTATACAAAGTGGAATTTCCTACTATATCATGATCA--------TAATAGGAGTGGAAAATATGCA----CAAGTA
i colLiv1.KB375528             I 4 I 4
s falChe1.KB397350               1850266 84 -   3649919 taggtatGCCTTACATTTTGTTATACAAAGTGGAATTTCCTACTATATCATGATCA--------TTATAGGAGTGGAAAATATGCA----CAAGTA
i falChe1.KB397350             I 4 I 4
s falPer1.KB390952               2896984 84 -  18327016 taggtatGCCTTACATTTTGTTATACAAAGTGGAATTTCCTACTATATCATGATCA--------TTATAGGAGTGGAAAATATGCA----CAAGTA
i falPer1.KB390952             I 4 I 4
s ficAlb2.chr3                  14963448 84 - 115844353 CAGGTATGCCTTACATTTTGTTATACAAAGCGGAATTTCCTACTATATCATGATCA--------TAATAGGAGTGGAAAATATGCA----CAAGTA
i ficAlb2.chr3                 N 0 I 4
s zonAlb1.KB913084               1452150 84 +   4964275 taggTATGCCTTACATTTTGTTATACAAAGTGGAATTTCCTACTATATCATGATCA--------TAACAGGAGTGGAAAATATGCA----CAAGTA
i zonAlb1.KB913084             I 4 I 4
s geoFor1.JH739908               7232539 84 +   8423346 taggTATGCCTTACATTTTGTTATACAAAGTGGAATTTCCTACTATATCATGATCA--------TAATAGGAGTGGAAAATATGCA----CAAGTA
i geoFor1.JH739908             I 4 I 4
s taeGut2.chr3                  14008915 84 - 112617285 TAGGTATGCCTTACATTTTGTTGTACAAAGTGGAATTTCCTACTATATCATGATCA--------TAATAGGAGTGGAAAATATGCA----CAAGTA
i taeGut2.chr3                 I 4 I 4
s pseHum1.KB221199               9565506 84 +  17335395 taggtATGCCTTACATTTTGTTATACAAAGTGGAATTTCCTACTATATCATGATCA--------TAATTGGAGTGGAAAATATGCA----CAAGTA
i pseHum1.KB221199             I 7 I 4
s melUnd1.JH556615               5052586 84 -  27607347 taggTATGCCTTACATTTTGTTATACAAAGTGGAATTTCATACTATATCATGATCA--------TAATAGGAGTGGAGAATATGCA----CAAGTA
i melUnd1.JH556615             I 4 I 4
s amaVit1.AOCU01175308               913 84 -      1390 tagGTATGCCTTACATTTTGTTATACAAAGTGGAATTTCCTACTATATCATGATCA--------TAATAGGAGTGGAGAATATGCA----CAAGTA
i amaVit1.AOCU01175308         I 4 I 4
s anaPla1.KB744685                101004 84 +    135447 taggtATGCCTTACATTTTGTTATACAAAGTGGAATTTCCTACTATATCATGATCA--------TAATAGGAGTGGAAAATATGCA----CAAGTA
i anaPla1.KB744685             I 4 I 4
s galGal4.chr3                  14861418 84 - 110447801 taggtATGCCTTACATTTTGTTATACAAAGTGGAATTTCCTACTATCTCATGATCA--------TTATAGGAGTGGAAAACATGCA----CAAGTA
i galGal4.chr3                 I 4 N 0
s melGal1.chr2                  16090339 92 - 116965580 TAGGTATGCCTTACATTTTGTTATACAAAGTGGAATTTCCTACTATCTCATGATCGTTATAGGNTTATAGGAGTGGAAAACATGCA----CAAGTA
i melGal1.chr2                 I 4 I 4
s allMis1.JH736069                100153 84 -    290924 CAGGTATGCCTTACATTTTGTTATACAAAGTGGAATTTCTTACTTTATCATGATCA--------TAATAGGAGTGGAAAATATGCA----CAAGTG
i allMis1.JH736069             I 4 I 12
s cheMyd1.KB479743               2212200 84 +   4979691 TAGGTATGCCTTACATTTTGTTGTACAAAGTGGAATTTCCTACTATATCATGATCA--------TAATAGGAGTGGAAAATATGCA----CAAGTA
i cheMyd1.KB479743             C 0 C 0
s chrPic2.chrUn_KK088203v1       8724502 84 +  11360908 TAGGTATGCCTTACATTTTGTTGTACAAAGTGGAATTTCCTACTATATCATGATCA--------TAATAGGAGTGGAAAATATGCA----CAAGTA
i chrPic2.chrUn_KK088203v1     C 0 C 0
s pelSin1.JH209035               1272546 84 +   2845976 TAGGTATGCCTTACATTTTGTTGTACAAAGTGGAATTTCCTACTATATCATGATCA--------TAATAGGAGTGGAAAATATGCA----CAAGTA
i pelSin1.JH209035             C 0 C 0
s apaSpi1.APJP01464503              3924 84 -      5020 TAGGTATGCCTTACATTTTGTTGTACAAAGTGGAATTTCCTACTATATCATGATCA--------TAATAGGAGTGGAAAATATGCA----CAAGTA
i apaSpi1.APJP01464503         C 0 C 0
s anoCar2.chr1                 148794695 84 + 263920458 TAGGTATGCCTTACATTTTGTTATACAAAGTGGAATTTCCTACTATATCATGATCA--------TTATAGGAGTGGAGAATATGCA----CAAGTG
i anoCar2.chr1                 I 5 C 0
s latCha1.JH135710                  5220 84 +      6215 taggtATGCCTTACATTTTGTTCTTCACAGTGGAATTTCCTACTATATCATGATCC--------TCGGAGGAGTGGAGAATATGCA----CAAGTA
i latCha1.JH135710             I 3 C 0

a score=-875360.000000
s hg38.chr8_KI270814v1_alt          8431 37 +    141812 ------TTTA--C-----TTTGTTCA----------------CG--TA------G-AAATATGTATTTCACTTTG
s panTro4.chr8                  54949455 37 + 143986469 ------TTTA--C-----TTTGTTCA----------------CA--TA------G-AAATATGTATTTCACTTTG
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  58987455 37 + 153482349 ------TTTA--C-----TTTGTTCA----------------CA--TA------G-AAATATGTATTTCACTTTG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48079357 37 + 100215132 ------TTTA--C-----TTTGTTCA----------------CA--TA------G-AAATATATATTTCACTTTG
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                  61629359 37 + 150158102 ------TTTA--C-----TTTGTTCA----------------CA--TA------G-AAATATGTATTTCACTTTG
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58302160 37 + 146850525 ------TTTA--C-----TTTGTTCA----------------CA--TA------G-AAATATGTATTTCACTTTG
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53228702 37 + 139301422 ------TTTA--C-----TTTGTTCA----------------CA--TA------G-AAATATGTATTTCACTTTG
i chlSab2.chr8                 C 0 C 0
s calJac3.chrUn_GL286234            2294 37 +    110629 ------TTCA--C-----TTTGTTCA----------------CA--TA------G-AAATATGTATTTCACATTG
i calJac3.chrUn_GL286234       C 0 C 0
s saiBol1.JH378179               2735180 37 +  10880647 ------TACA--T-----TTTGTTCA----------------CA--TA------G-AAATATGTATTTCACATTG
i saiBol1.JH378179             C 0 C 0
s otoGar3.GL873541              21542787 42 -  23169006 ------AGTA--TAAATAAGTAAGCA----------------CA--TA------T-AAATACATAATTTAACTTA
i otoGar3.GL873541             C 0 C 0
s speTri2.JH393342               4215406 23 -   9676502 ------AGTA--C-----TCAACTCA----------------GA--GA----------------ATTTTA-----
i speTri2.JH393342             C 0 C 0
s orcOrc1.KB316907              11144691 36 +  17242564 ------TTCA--C-----TTTATTCA----------------CA--TA------T--AATACGTATTCCAACATA
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84375079 37 +  91571448 ------TTCA--C-----TCTGTTCA----------------CA--TA------T-AAATGTGTATTTCACTGTA
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               7113790 37 -  14545593 ------TTTA--C-----TTTCTTCA----------------CT--TA------T-AAATAGGTATTTCACTATA
i cerSim1.JH767782             C 0 C 0
s pteAle1.KB030580              19639326 37 -  23789964 ------TTCA--C-----TTTGTTCA----------------CA--TC------T-AAATATGTATTTCATTATA
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           28040810 37 -  46401353 ------TTCA--C-----CTTGTTCA----------------CA--CA------T-TAATATGTAGCTCACGACA
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629              10389412 37 +  24341844 ------TTCA--C-----CTGGTTCA----------------CA--CA------T-TAATGCGTATCTTACTATA
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1555690 39 -   2788317 ------TTCA--T-----GTTGTTCA----------------CCTTTG------T-TCACACGTATTTTACTGTA
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 531067705 27 + 748055161 ------TTAA--T-----AATTTT-A----------------TA--T----------------TTACCTAAAATA
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random   1025096 28 +   3395230 ------ttaa--t-----aattttca----------------ta--t----------------ttacttaAAACA
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL057408                  3773 28 -     17528 ------TTAT--T-----AATTTTCA----------------CA--T----------------TTTCTTAAAATA
i macEug2.GL057408             C 0 C 0
s colLiv1.KB375528               6007185 27 -  25666195 ------------------Tccattgt----------------aa--aa------tattattttgctttt------
i colLiv1.KB375528             I 4 C 0
s falChe1.KB397350               1850354 26 -   3649919 ------------------TCCAttca----------------aa--aa------t-tgtattttttttt------
i falChe1.KB397350             I 4 N 0
s falPer1.KB390952               2897072 26 -  18327016 ------------------TCCAttca----------------aa--aa------t-tgtatttattttt------
i falPer1.KB390952             I 4 N 0
s ficAlb2.chr3                  14963536 26 - 115844353 ------------------TCcattat----------------aa--aa------t-ttattttacttta------
i ficAlb2.chr3                 I 4 I 26
s zonAlb1.KB913084               1452238 26 +   4964275 ------------------TCCattct----------------aa--aa------t-ttaatttactttg------
i zonAlb1.KB913084             I 4 I 2549
s geoFor1.JH739908               7232627 26 +   8423346 ------------------TCCattct----------------aa--aa------t-ttattttactttg------
i geoFor1.JH739908             I 4 N 0
s taeGut2.chr3                  14009003 26 - 112617285 ------------------TCTATTCT----------------AA--AA------T-TTATTTCATTTTG------
i taeGut2.chr3                 I 4 I 6010
s pseHum1.KB221199               9565594 26 +  17335395 ------------------TCCATTCT----------------AA--AA------g-ttactttcttttt------
i pseHum1.KB221199             I 4 I 66
s melUnd1.JH556615               5052674 29 -  27607347 ------------------TCTATTCT----------------TA--AAGTA---T-TTAATATGATTTT------
i melUnd1.JH556615             I 4 I 16
s amaVit1.AOCU01175308              1001 29 -      1390 ------------------TCCATtca----------------aa--aaact---t-tttctttgctttt------
i amaVit1.AOCU01175308         I 4 I 36
s anaPla1.KB744685                101092 44 +    135447 ------------------CCcattct----tttcaaaaaagaaa--aaaaacttt-taaagaaaactta------
i anaPla1.KB744685             I 4 I 13
s melGal1.chr2                  16090435 40 - 116965580 ------------------TTTATTCTAAAGCATAATAATAGAAA--AA------T-TGAAGAATGCT--------
i melGal1.chr2                 I 4 I 15
s allMis1.JH736069                100249 25 -    290924 ------------------CTTATT-T----------------AA--AA------T-CTGGAGGGTTTTA------
i allMis1.JH736069             I 12 I 5
s cheMyd1.KB479743               2212284 18 +   4979691 ------------------------------------------AG--TA------T-Taggtttctttat------
i cheMyd1.KB479743             C 0 I 7
s chrPic2.chrUn_KK088203v1       8724586 18 +  11360908 ------------------------------------------AG--TA------T-TGggtttctttat------
i chrPic2.chrUn_KK088203v1     C 0 I 7
s pelSin1.JH209035               1272630 18 +   2845976 ------------------------------------------AG--TA------T-TAggtttctttat------
i pelSin1.JH209035             C 0 I 7
s apaSpi1.APJP01464503              4008 18 -      5020 ------------------------------------------AG--TA------T-Taggtttctttat------
i apaSpi1.APJP01464503         C 0 I 7
s anoCar2.chr1                 148794779 26 + 263920458 ------------------AGTACTCA----------------Ga--aa------t-taatatataattt------
i anoCar2.chr1                 C 0 I 20
s latCha1.JH135710                  5304 36 +      6215 AGGATTTTCAATC-----TCTCTTAA----------------GC--TT------C-TGAGATGCAG---------
i latCha1.JH135710             C 0 C 0

a score=-37739.000000
s hg38.chr8_KI270814v1_alt          8468 8 +    141812 ATATAAT--T
s panTro4.chr8                  54949492 8 + 143986469 ATATAAT--T
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  58987492 8 + 153482349 ATATAAT--T
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48079394 8 + 100215132 ATATAAT--T
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                  61629396 8 + 150158102 ATATAAC--T
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58302197 8 + 146850525 ATATAAC--T
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53228739 8 + 139301422 ATATAAT--T
i chlSab2.chr8                 C 0 C 0
s calJac3.chrUn_GL286234            2331 8 +    110629 GTAGAAT--T
i calJac3.chrUn_GL286234       C 0 C 0
s saiBol1.JH378179               2735217 8 +  10880647 ATAGAAT--T
i saiBol1.JH378179             C 0 C 0
s otoGar3.GL873541              21542829 8 -  23169006 ATAGAAT--T
i otoGar3.GL873541             C 0 C 0
s orcOrc1.KB316907              11144727 8 +  17242564 ATAGAAT--T
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84375116 8 +  91571448 ATAGAAT--T
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               7113827 8 -  14545593 ATAGAAT--T
i cerSim1.JH767782             C 0 C 0
s pteAle1.KB030580              19639363 8 -  23789964 ATAGAAT--T
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           28040847 8 -  46401353 GCAGAAT--C
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629              10389449 8 +  24341844 GTAGAAT--T
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1555729 8 -   2788317 GTAAAAT--T
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 531067732 7 + 748055161 GAGAAA---C
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random   1025124 8 +   3395230 GAGAAat--c
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL057408                  3801 6 -     17528 GACCAA----
i macEug2.GL057408             C 0 C 0
s colLiv1.KB375528               6007212 2 -  25666195 -----ac---
i colLiv1.KB375528             C 0 I 10
s anaPla1.KB744685                101149 7 +    135447 TCTAACC---
i anaPla1.KB744685             I 13 I 23
s melGal1.chr2                  16090490 7 - 116965580 TATAGCT---
i melGal1.chr2                 I 15 I 21
s allMis1.JH736069                100279 7 -    290924 ATGAAAT---
i allMis1.JH736069             I 5 I 4
s cheMyd1.KB479743               2212309 6 +   4979691 -taaagt---
i cheMyd1.KB479743             I 7 I 4
s chrPic2.chrUn_KK088203v1       8724611 6 +  11360908 -taaagt---
i chrPic2.chrUn_KK088203v1     I 7 N 0
s pelSin1.JH209035               1272655 7 +   2845976 gtaaaat---
i pelSin1.JH209035             I 7 I 4
s apaSpi1.APJP01464503              4033 7 -      5020 gtaaaat---
i apaSpi1.APJP01464503         I 7 I 4
s anoCar2.chr1                 148794825 9 + 263920458 ATATAATCT-
i anoCar2.chr1                 I 20 C 0
s latCha1.JH135710                  5340 8 +      6215 GTGTGGT--T
i latCha1.JH135710             C 0 C 0
e ficAlb2.chr3                  14963562 26 - 115844353 I
e pseHum1.KB221199               9565620 66 +  17335395 I
e zonAlb1.KB913084               1452264 2549 +   4964275 I
e amaVit1.AOCU01175308              1030 36 -      1390 I
e melUnd1.JH556615               5052703 16 -  27607347 I
e taeGut2.chr3                  14009029 6010 - 112617285 I
e speTri2.JH393342               4215429 0 -   9676502 C

a score=-13870.000000
s hg38.chr8_KI270814v1_alt          8476 3 +    141812 GGA--
s panTro4.chr8                  54949500 3 + 143986469 GGA--
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  58987500 3 + 153482349 GGA--
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48079402 3 + 100215132 GTA--
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                  61629404 3 + 150158102 GGA--
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58302205 3 + 146850525 GGA--
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53228747 3 + 139301422 GGA--
i chlSab2.chr8                 C 0 C 0
s calJac3.chrUn_GL286234            2339 3 +    110629 GGA--
i calJac3.chrUn_GL286234       C 0 C 0
s saiBol1.JH378179               2735225 3 +  10880647 GAA--
i saiBol1.JH378179             C 0 C 0
s otoGar3.GL873541              21542837 3 -  23169006 AGA--
i otoGar3.GL873541             C 0 C 0
s orcOrc1.KB316907              11144735 3 +  17242564 GGG--
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84375124 3 +  91571448 AGG--
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               7113835 3 -  14545593 AGA--
i cerSim1.JH767782             C 0 C 0
s pteAle1.KB030580              19639371 3 -  23789964 GGA--
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           28040855 1 -  46401353 A----
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629              10389457 1 +  24341844 A----
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1555737 3 -   2788317 ATA--
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 531067739 3 + 748055161 TGA--
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random   1025132 3 +   3395230 agt--
i sarHar1.chr1_GL834688_random C 0 C 0
s anoCar2.chr1                 148794834 2 + 263920458 -GC--
i anoCar2.chr1                 C 0 I 2
s latCha1.JH135710                  5348 3 +      6215 --AGT
i latCha1.JH135710             C 0 C 0
e ficAlb2.chr3                  14963562 26 - 115844353 I
e pseHum1.KB221199               9565620 66 +  17335395 I
e zonAlb1.KB913084               1452264 2549 +   4964275 I
e colLiv1.KB375528               6007214 10 -  25666195 I
e allMis1.JH736069                100286 4 -    290924 I
e macEug2.GL057408                  3807 0 -     17528 C
e melGal1.chr2                  16090497 21 - 116965580 I
e anaPla1.KB744685                101156 23 +    135447 I
e amaVit1.AOCU01175308              1030 36 -      1390 I
e apaSpi1.APJP01464503              4040 4 -      5020 I
e cheMyd1.KB479743               2212315 4 +   4979691 I
e pelSin1.JH209035               1272662 4 +   2845976 I
e melUnd1.JH556615               5052703 16 -  27607347 I
e taeGut2.chr3                  14009029 6010 - 112617285 I
e speTri2.JH393342               4215429 0 -   9676502 C

a score=-161122.000000
s hg38.chr8_KI270814v1_alt          8479 15 +    141812 ------TCAGAGTAGAAT----TTT
s panTro4.chr8                  54949503 15 + 143986469 ------TCAGAGTAGAAT----TTT
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  58987503 15 + 153482349 ------TCAGAGTAGAAT----TTT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48079405 15 + 100215132 ------TCAGAGTAGAAT----TTT
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                  61629407 15 + 150158102 ------TCAGAGTAGAAT----TTT
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58302208 15 + 146850525 ------TCAGAGTAGAAT----TTT
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53228750 15 + 139301422 ------TCAGAGTAGAAT----TTT
i chlSab2.chr8                 C 0 C 0
s calJac3.chrUn_GL286234            2342 15 +    110629 ------TCAGAATAGAAT----TTT
i calJac3.chrUn_GL286234       C 0 C 0
s saiBol1.JH378179               2735228 15 +  10880647 ------TCAGAATAGAAT----TTT
i saiBol1.JH378179             C 0 C 0
s otoGar3.GL873541              21542840 19 -  23169006 ------TCAAAGTAGAATTTTGTTT
i otoGar3.GL873541             C 0 C 0
s speTri2.JH393342               4215429  3 -   9676502 ----------------------TTT
i speTri2.JH393342             C 0 C 0
s orcOrc1.KB316907              11144738 14 +  17242564 ------TC-AAGTAGAat----ttt
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84375127 15 +  91571448 ------TCAAAATAGAAT----TTT
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               7113838 15 -  14545593 ------TCAAAATAGAAT----TTT
i cerSim1.JH767782             C 0 C 0
s pteAle1.KB030580              19639374 15 -  23789964 ------TCAAAATAGAAT----TTT
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           28040856 10 -  46401353 ---------------Gattttattt
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629              10389458 10 +  24341844 ---------------Gattttattt
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1555740 19 -   2788317 ------TCAAAACAGAATTTTATTC
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 531067742 11 + 748055161 ------TTAGAATA--------TTT
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random   1025135 11 +   3395230 ------ttaaaata--------ttt
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL057408                  3807 11 -     17528 ------TTAAAATA--------TTT
i macEug2.GL057408             C 0 C 0
s colLiv1.KB375528               6007224 14 -  25666195 ------CTGTTTAGGTTT----TT-
i colLiv1.KB375528             I 10 N 0
s pseHum1.KB221199               9565686  3 +  17335395 -----------------A----TC-
i pseHum1.KB221199             I 66 I 12
s melUnd1.JH556615               5052719  8 -  27607347 ------------TAAAGT----TC-
i melUnd1.JH556615             I 16 I 12
s amaVit1.AOCU01175308              1066 14 -      1390 ------ATATGCTGTATT----TC-
i amaVit1.AOCU01175308         I 36 I 14
s anaPla1.KB744685                101179 14 +    135447 ------TTGTACTGGAAC----AT-
i anaPla1.KB744685             I 23 I 13
s melGal1.chr2                  16090518 14 - 116965580 ------TTGTAGTGGAAT----AC-
i melGal1.chr2                 I 21 I 13
s allMis1.JH736069                100290  2 -    290924 ----------------------AC-
i allMis1.JH736069             I 4 I 13
s cheMyd1.KB479743               2212319 14 +   4979691 ------taaatgaAGACT----AT-
i cheMyd1.KB479743             I 4 I 13
s pelSin1.JH209035               1272666 14 +   2845976 ------taaatgaagact----at-
i pelSin1.JH209035             I 4 N 0
s apaSpi1.APJP01464503              4044 14 -      5020 ------taaatgaagaat----at-
i apaSpi1.APJP01464503         I 4 I 11
s anoCar2.chr1                 148794838 14 + 263920458 ------GAGGATTAAACT----TT-
i anoCar2.chr1                 I 2 I 12
s latCha1.JH135710                  5351 18 +      6215 TTTGATGGGTAGCACACT-------
i latCha1.JH135710             C 0 C 0
e ficAlb2.chr3                  14963562 26 - 115844353 I
e zonAlb1.KB913084               1452264 2549 +   4964275 I
e taeGut2.chr3                  14009029 6010 - 112617285 I

a score=35038.000000
s hg38.chr8_KI270814v1_alt          8494  7 +    141812 AT---T-----ACA-T------
s panTro4.chr8                  54949518  7 + 143986469 AT---T-----ACA-T------
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  58987518  7 + 153482349 AT---T-----ACA-T------
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48079420  7 + 100215132 AT---T-----ACA-T------
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                  61629422  7 + 150158102 AT---T-----ACA-T------
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58302223  7 + 146850525 AT---T-----ACA-T------
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53228765  7 + 139301422 AT---T-----ACA-T------
i chlSab2.chr8                 C 0 C 0
s calJac3.chrUn_GL286234            2357  7 +    110629 AT---T-----ACG-T------
i calJac3.chrUn_GL286234       C 0 C 0
s saiBol1.JH378179               2735243  7 +  10880647 AT---T-----ACA-T------
i saiBol1.JH378179             C 0 C 0
s otoGar3.GL873541              21542859  8 -  23169006 AT---T-----ATACC------
i otoGar3.GL873541             C 0 C 0
s speTri2.JH393342               4215432  7 -   9676502 GT---T-----ATA-C------
i speTri2.JH393342             C 0 C 0
s orcOrc1.KB316907              11144752  7 +  17242564 at---t-----aca-t------
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84375142  7 +  91571448 AT---T-----ACA-T------
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               7113853  7 -  14545593 AT---T-----ACA-T------
i cerSim1.JH767782             C 0 C 0
s pteAle1.KB030580              19639389 12 -  23789964 AT---TTTACAGCA-T------
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           28040866  7 -  46401353 at---t-----ata-t------
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629              10389468  7 +  24341844 at---t-----ata-t------
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1555759  7 -   2788317 AT---T-----ACT-T------
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 531067753 10 + 748055161 ACTGGT-----ACA-T------
i monDom5.chr1                 C 0 I 5
s sarHar1.chr1_GL834688_random   1025146 10 +   3395230 atgaat-----aca-T------
i sarHar1.chr1_GL834688_random C 0 I 6
s macEug2.GL057408                  3818 10 -     17528 ATTAAT-----ACA-T------
i macEug2.GL057408             C 0 I 6
s latCha1.JH135710                  5369 12 +      6215 ---------CTGCA-TGTGCAG
i latCha1.JH135710             C 0 C 0
e ficAlb2.chr3                  14963562 26 - 115844353 I
e anoCar2.chr1                 148794852 12 + 263920458 I
e pseHum1.KB221199               9565689 12 +  17335395 I
e zonAlb1.KB913084               1452264 2549 +   4964275 I
e allMis1.JH736069                100292 13 -    290924 I
e melGal1.chr2                  16090532 13 - 116965580 I
e anaPla1.KB744685                101193 13 +    135447 I
e amaVit1.AOCU01175308              1080 14 -      1390 I
e apaSpi1.APJP01464503              4058 11 -      5020 I
e cheMyd1.KB479743               2212333 13 +   4979691 I
e melUnd1.JH556615               5052727 12 -  27607347 I
e taeGut2.chr3                  14009029 6010 - 112617285 I

a score=-77330.000000
s hg38.chr8_KI270814v1_alt          8501 26 +    141812 T-AAA---GT-AATTCTGAATTGTGATAACt
s panTro4.chr8                  54949525 26 + 143986469 T-AAA---GT-AATTCTGAATTGTGATAACt
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  58987525 26 + 153482349 T-AAA---GT-AATTCTGAATTGTGATAACt
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48079427 26 + 100215132 T-AAA---GT-AATTCTGAATTGTGATAACt
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                  61629429 26 + 150158102 T-AAA---GT-AATTCTGAATTGTGATAACt
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58302230 26 + 146850525 T-AAA---GT-AATTCTGAATTGTGATAACt
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53228772 26 + 139301422 T-AAA---GT-AATTCTGAATTGTGATAACt
i chlSab2.chr8                 C 0 C 0
s calJac3.chrUn_GL286234            2364 26 +    110629 T-AAA---AT-AATGCTGAATTGTGATAACT
i calJac3.chrUn_GL286234       C 0 C 0
s saiBol1.JH378179               2735250 26 +  10880647 T-AAA---AT-AATTTTGAATTGTGATAACT
i saiBol1.JH378179             C 0 C 0
s otoGar3.GL873541              21542867 26 -  23169006 T-AAA---AT-AATACTGAGTTGTGACAACT
i otoGar3.GL873541             C 0 C 0
s speTri2.JH393342               4215439 22 -   9676502 TAAAA---AT-AATTCTGAATCATGA-----
i speTri2.JH393342             C 0 C 0
s orcOrc1.KB316907              11144759 24 +  17242564 t-aaaattat-tatttttaataataa-----
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84375149 18 +  91571448 T-AAAA--AT-TATTCTAAATT---------
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               7113860  3 -  14545593 T-AA---------------------------
i cerSim1.JH767782             C 0 C 0
s pteAle1.KB030580              19639401 22 -  23789964 T-AAAA--AT-TATTCTAAATTGTAG-----
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           28040873 24 -  46401353 t-taa---aa-aattCTGAATAGTGATAA--
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629              10389475 26 +  24341844 t-aaa---aa-aattCTGAATTGTGATAATT
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1555766 27 -   2788317 T-AAA---AATAATTTTGAATTGTGATACTT
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 531067768 26 + 748055161 T-GAA---GT-GATTTTATATTATACTTATC
i monDom5.chr1                 I 5 C 0
s sarHar1.chr1_GL834688_random   1025162 24 +   3395230 T-GAA------GATTCTGTattacacttaat
i sarHar1.chr1_GL834688_random I 6 C 0
s macEug2.GL057408                  3834 26 -     17528 T-GAG---AT-AATTTTCTATTACTATTATT
i macEug2.GL057408             I 6 C 0
s ficAlb2.chr3                  14963588 14 - 115844353 t-gtt---tt-gttgtttt------------
i ficAlb2.chr3                 I 26 I 3
s pseHum1.KB221199               9565701 18 +  17335395 T-ATT---TG-AATTCTCT--------AAcc
i pseHum1.KB221199             I 12 I 4
s melUnd1.JH556615               5052739 18 -  27607347 T-GCA---CA-TATgctgt--------attt
i melUnd1.JH556615             I 12 I 4
s amaVit1.AOCU01175308              1094 18 -      1390 T-ATT---CT-AGTATTGA--------AATT
i amaVit1.AOCU01175308         I 14 I 13
s anaPla1.KB744685                101206 19 +    135447 T-GTT---TG-AATTCTGC-------Taact
i anaPla1.KB744685             I 13 I 4
s melGal1.chr2                  16090545 19 - 116965580 T-ATT---TG-ATTTCTGC-------TAACT
i melGal1.chr2                 I 13 I 4
s allMis1.JH736069                100305 20 -    290924 T-GTT---CA-TATTTCTT------ATAACT
i allMis1.JH736069             I 13 I 945
s cheMyd1.KB479743               2212346 20 +   4979691 T-AGA---AA-GTTGCTGT------ATAGCT
i cheMyd1.KB479743             I 13 N 0
s apaSpi1.APJP01464503              4069 20 -      5020 T-AGA---AA-ATTATTGT------ATGGCT
i apaSpi1.APJP01464503         I 11 N 0
s anoCar2.chr1                 148794864 23 + 263920458 T-GTA---TG-TGGCCCATTTT---ACAACT
i anoCar2.chr1                 I 12 C 0
s latCha1.JH135710                  5381 26 +      6215 T-TAG---GT-AAGTTTTAGTAGATAAAATT
i latCha1.JH135710             C 0 C 0
e zonAlb1.KB913084               1452264 2549 +   4964275 I
e taeGut2.chr3                  14009029 6010 - 112617285 I

a score=22481.000000
s hg38.chr8_KI270814v1_alt          8527  4 +    141812 tttt----------
s panTro4.chr8                  54949551  4 + 143986469 tttt----------
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  58987551  4 + 153482349 tttt----------
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48079453  4 + 100215132 tttt----------
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                  61629455  4 + 150158102 tttt----------
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58302256  4 + 146850525 tttt----------
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53228798  4 + 139301422 tttt----------
i chlSab2.chr8                 C 0 C 0
s calJac3.chrUn_GL286234            2390  4 +    110629 TTTT----------
i calJac3.chrUn_GL286234       C 0 C 0
s saiBol1.JH378179               2735276  4 +  10880647 TTTT----------
i saiBol1.JH378179             C 0 C 0
s otoGar3.GL873541              21542893  4 -  23169006 TTTT----------
i otoGar3.GL873541             C 0 I 389
s triMan1.JH594629              10389501  4 +  24341844 TTTT----------
i triMan1.JH594629             C 0 I 49
s dasNov3.JH567436               1555793  4 -   2788317 TTTT----------
i dasNov3.JH567436             C 0 I 9
s monDom5.chr1                 531067794  4 + 748055161 TTTT----------
i monDom5.chr1                 C 0 I 6
s sarHar1.chr1_GL834688_random   1025186  4 +   3395230 tttt----------
i sarHar1.chr1_GL834688_random C 0 I 4
s macEug2.GL057408                  3860  4 -     17528 TTTT----------
i macEug2.GL057408             C 0 I 5
s anoCar2.chr1                 148794887  3 + 263920458 T-CT----------
i anoCar2.chr1                 C 0 I 3
s latCha1.JH135710                  5407 11 +      6215 ---TAACAGGGCCA
i latCha1.JH135710             C 0 C 0
e ficAlb2.chr3                  14963602  3 - 115844353 I
e pseHum1.KB221199               9565719  4 +  17335395 I
e zonAlb1.KB913084               1452264 2549 +   4964275 I
e allMis1.JH736069                100325 945 -    290924 I
e melGal1.chr2                  16090564  4 - 116965580 I
e anaPla1.KB744685                101225  4 +    135447 I
e amaVit1.AOCU01175308              1112 13 -      1390 I
e melUnd1.JH556615               5052757  4 -  27607347 I
e taeGut2.chr3                  14009029 6010 - 112617285 I
e equCab2.chr15                 84375167  0 +  91571448 C
e speTri2.JH393342               4215461  0 -   9676502 C
e loxAfr3.scaffold_20           28040897  0 -  46401353 C
e pteAle1.KB030580              19639423  0 -  23789964 C
e cerSim1.JH767782               7113863  0 -  14545593 C
e orcOrc1.KB316907              11144783  0 +  17242564 C

a score=19110.000000
s hg38.chr8_KI270814v1_alt          8531 1 +    141812 t
s panTro4.chr8                  54949555 1 + 143986469 t
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  58987555 1 + 153482349 t
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48079457 1 + 100215132 t
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                  61629459 1 + 150158102 t
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58302260 1 + 146850525 t
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53228802 1 + 139301422 t
i chlSab2.chr8                 C 0 C 0
s calJac3.chrUn_GL286234            2394 1 +    110629 T
i calJac3.chrUn_GL286234       C 0 C 0
s saiBol1.JH378179               2735280 1 +  10880647 T
i saiBol1.JH378179             C 0 C 0
s dasNov3.JH567436               1555806 1 -   2788317 T
i dasNov3.JH567436             I 9 C 0
s monDom5.chr1                 531067804 1 + 748055161 T
i monDom5.chr1                 I 6 C 0
s sarHar1.chr1_GL834688_random   1025194 1 +   3395230 t
i sarHar1.chr1_GL834688_random I 4 C 0
s macEug2.GL057408                  3869 1 -     17528 T
i macEug2.GL057408             I 5 C 0
s ficAlb2.chr3                  14963605 1 - 115844353 t
i ficAlb2.chr3                 I 3 C 0
s pseHum1.KB221199               9565723 1 +  17335395 t
i pseHum1.KB221199             I 4 C 0
s melUnd1.JH556615               5052761 1 -  27607347 t
i melUnd1.JH556615             I 4 C 0
s amaVit1.AOCU01175308              1125 1 -      1390 T
i amaVit1.AOCU01175308         I 13 C 0
s anaPla1.KB744685                101229 1 +    135447 t
i anaPla1.KB744685             I 4 C 0
s melGal1.chr2                  16090568 1 - 116965580 T
i melGal1.chr2                 I 4 C 0
s anoCar2.chr1                 148794893 1 + 263920458 T
i anoCar2.chr1                 I 3 C 0
s latCha1.JH135710                  5418 1 +      6215 T
i latCha1.JH135710             C 0 C 0
e zonAlb1.KB913084               1452264 2549 +   4964275 I
e allMis1.JH736069                100325 945 -    290924 I
e taeGut2.chr3                  14009029 6010 - 112617285 I
e equCab2.chr15                 84375167 0 +  91571448 C
e speTri2.JH393342               4215461 0 -   9676502 C
e triMan1.JH594629              10389505 49 +  24341844 I
e loxAfr3.scaffold_20           28040897 0 -  46401353 C
e pteAle1.KB030580              19639423 0 -  23789964 C
e cerSim1.JH767782               7113863 0 -  14545593 C
e orcOrc1.KB316907              11144783 0 +  17242564 C
e otoGar3.GL873541              21542897 389 -  23169006 I

a score=-20046.000000
s hg38.chr8_KI270814v1_alt          8532  9 +    141812 tt-----------ttttttt
s panTro4.chr8                  54949556  9 + 143986469 tt-----------ttttttt
i panTro4.chr8                 C 0 I 1
s ponAbe2.chr8                  58987556  9 + 153482349 tt-----------tttgttt
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48079458  9 + 100215132 tt-----------ttttttt
i nomLeu3.chr16                C 0 I 1
s rheMac3.chr8                  61629460  3 + 150158102 tt-----------t------
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58302261  3 + 146850525 tt-----------t------
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53228803  3 + 139301422 tt-----------t------
i chlSab2.chr8                 C 0 C 0
s pteAle1.KB030580              19639423  8 -  23789964 -T-----------TTTTTTC
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           28040897  7 -  46401353 -------------TTTTTTC
i loxAfr3.scaffold_20          C 0 C 0
s dasNov3.JH567436               1555807 20 -   2788317 TTTAAATTAAAAATTCCTTT
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 531067805  9 + 748055161 -----------CCCTGTTTT
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random   1025195  9 +   3395230 -----------cacttcttt
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL057408                  3870  9 -     17528 -----------AACTTCTTT
i macEug2.GL057408             C 0 C 0
s ficAlb2.chr3                  14963606  7 - 115844353 -------------ttttttt
i ficAlb2.chr3                 C 0 I 2
s pseHum1.KB221199               9565724  7 +  17335395 -------------tttattt
i pseHum1.KB221199             C 0 I 2
s melUnd1.JH556615               5052762  5 -  27607347 -------------tttat--
i melUnd1.JH556615             C 0 I 1
s amaVit1.AOCU01175308              1126  7 -      1390 -------------TTTATTT
i amaVit1.AOCU01175308         C 0 I 2
s anaPla1.KB744685                101230  7 +    135447 -------------tttattt
i anaPla1.KB744685             C 0 I 2
s melGal1.chr2                  16090569  7 - 116965580 -------------TTTTTTT
i melGal1.chr2                 C 0 N 0
s anoCar2.chr1                 148794894  7 + 263920458 -------------TTAGTAT
i anoCar2.chr1                 C 0 C 0
s latCha1.JH135710                  5419  9 +      6215 TT-----------TTCTTTT
i latCha1.JH135710             C 0 C 0
e zonAlb1.KB913084               1452264 2549 +   4964275 I
e allMis1.JH736069                100325 945 -    290924 I
e calJac3.chrUn_GL286234            2395  0 +    110629 C
e taeGut2.chr3                  14009029 6010 - 112617285 I
e equCab2.chr15                 84375167  0 +  91571448 C
e speTri2.JH393342               4215461  0 -   9676502 C
e triMan1.JH594629              10389505 49 +  24341844 I
e cerSim1.JH767782               7113863  0 -  14545593 C
e orcOrc1.KB316907              11144783  0 +  17242564 C
e otoGar3.GL873541              21542897 389 -  23169006 I
e saiBol1.JH378179               2735281  0 +  10880647 C

a score=-12045.000000
s hg38.chr8_KI270814v1_alt          8541 3 +    141812 gag--
s panTro4.chr8                  54949566 3 + 143986469 gag--
i panTro4.chr8                 I 1 C 0
s ponAbe2.chr8                  58987565 3 + 153482349 gag--
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48079468 3 + 100215132 gag--
i nomLeu3.chr16                I 1 C 0
s rheMac3.chr8                  61629463 3 + 150158102 gag--
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58302264 3 + 146850525 gag--
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53228806 3 + 139301422 gag--
i chlSab2.chr8                 C 0 C 0
s pteAle1.KB030580              19639431 3 -  23789964 AAG--
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           28040904 2 -  46401353 AA---
i loxAfr3.scaffold_20          C 0 C 0
s dasNov3.JH567436               1555827 2 -   2788317 AA---
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 531067814 3 + 748055161 GAT--
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random   1025204 3 +   3395230 gaT--
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL057408                  3879 3 -     17528 GAT--
i macEug2.GL057408             C 0 C 0
s ficAlb2.chr3                  14963615 2 - 115844353 -ta--
i ficAlb2.chr3                 I 2 I 1
s pseHum1.KB221199               9565733 2 +  17335395 -ag--
i pseHum1.KB221199             I 2 I 1
s melUnd1.JH556615               5052768 2 -  27607347 -at--
i melUnd1.JH556615             I 1 I 1
s amaVit1.AOCU01175308              1135 2 -      1390 -AG--
i amaVit1.AOCU01175308         I 2 I 1
s anaPla1.KB744685                101239 2 +    135447 -aG--
i anaPla1.KB744685             I 2 I 1
s anoCar2.chr1                 148794901 2 + 263920458 -AG--
i anoCar2.chr1                 C 0 I 1
s latCha1.JH135710                  5428 3 +      6215 --GGT
i latCha1.JH135710             C 0 C 0
e zonAlb1.KB913084               1452264 2549 +   4964275 I
e allMis1.JH736069                100325 945 -    290924 I
e calJac3.chrUn_GL286234            2395 0 +    110629 C
e taeGut2.chr3                  14009029 6010 - 112617285 I
e equCab2.chr15                 84375167 0 +  91571448 C
e speTri2.JH393342               4215461 0 -   9676502 C
e triMan1.JH594629              10389505 49 +  24341844 I
e cerSim1.JH767782               7113863 0 -  14545593 C
e orcOrc1.KB316907              11144783 0 +  17242564 C
e otoGar3.GL873541              21542897 389 -  23169006 I
e saiBol1.JH378179               2735281 0 +  10880647 C

a score=11422.000000
s hg38.chr8_KI270814v1_alt          8544 1 +    141812 a
s panTro4.chr8                  54949569 1 + 143986469 a
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  58987568 1 + 153482349 a
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48079471 1 + 100215132 a
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                  61629466 1 + 150158102 a
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58302267 1 + 146850525 a
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53228809 1 + 139301422 a
i chlSab2.chr8                 C 0 C 0
s loxAfr3.scaffold_20           28040906 1 -  46401353 A
i loxAfr3.scaffold_20          C 0 I 56
s dasNov3.JH567436               1555829 1 -   2788317 G
i dasNov3.JH567436             C 0 I 2
s monDom5.chr1                 531067817 1 + 748055161 A
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random   1025207 1 +   3395230 A
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL057408                  3882 1 -     17528 A
i macEug2.GL057408             C 0 C 0
s ficAlb2.chr3                  14963618 1 - 115844353 a
i ficAlb2.chr3                 I 1 N 0
s pseHum1.KB221199               9565736 1 +  17335395 a
i pseHum1.KB221199             I 1 N 0
s melUnd1.JH556615               5052771 1 -  27607347 G
i melUnd1.JH556615             I 1 I 1
s amaVit1.AOCU01175308              1138 1 -      1390 A
i amaVit1.AOCU01175308         I 1 N 0
s anaPla1.KB744685                101242 1 +    135447 A
i anaPla1.KB744685             I 1 C 0
s anoCar2.chr1                 148794904 1 + 263920458 A
i anoCar2.chr1                 I 1 C 0
s latCha1.JH135710                  5431 1 +      6215 A
i latCha1.JH135710             C 0 C 0
e zonAlb1.KB913084               1452264 2549 +   4964275 I
e allMis1.JH736069                100325 945 -    290924 I
e calJac3.chrUn_GL286234            2395 0 +    110629 C
e taeGut2.chr3                  14009029 6010 - 112617285 I
e equCab2.chr15                 84375167 0 +  91571448 C
e speTri2.JH393342               4215461 0 -   9676502 C
e triMan1.JH594629              10389505 49 +  24341844 I
e pteAle1.KB030580              19639434 0 -  23789964 C
e cerSim1.JH767782               7113863 0 -  14545593 C
e orcOrc1.KB316907              11144783 0 +  17242564 C
e otoGar3.GL873541              21542897 389 -  23169006 I
e saiBol1.JH378179               2735281 0 +  10880647 C

a score=594.000000
s hg38.chr8_KI270814v1_alt          8545 1 +    141812 t
s panTro4.chr8                  54949570 1 + 143986469 t
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  58987569 1 + 153482349 t
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48079472 1 + 100215132 t
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                  61629467 1 + 150158102 t
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58302268 1 + 146850525 t
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53228810 1 + 139301422 c
i chlSab2.chr8                 C 0 C 0
s dasNov3.JH567436               1555832 1 -   2788317 A
i dasNov3.JH567436             I 2 C 0
s monDom5.chr1                 531067818 1 + 748055161 T
i monDom5.chr1                 C 0 N 0
s sarHar1.chr1_GL834688_random   1025208 1 +   3395230 G
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL057408                  3883 1 -     17528 T
i macEug2.GL057408             C 0 N 0
s latCha1.JH135710                  5432 1 +      6215 T
i latCha1.JH135710             C 0 C 0
e anoCar2.chr1                 148794905 0 + 263920458 C
e zonAlb1.KB913084               1452264 2549 +   4964275 I
e allMis1.JH736069                100325 945 -    290924 I
e anaPla1.KB744685                101243 0 +    135447 C
e calJac3.chrUn_GL286234            2395 0 +    110629 C
e melUnd1.JH556615               5052772 1 -  27607347 I
e taeGut2.chr3                  14009029 6010 - 112617285 I
e equCab2.chr15                 84375167 0 +  91571448 C
e speTri2.JH393342               4215461 0 -   9676502 C
e triMan1.JH594629              10389505 49 +  24341844 I
e loxAfr3.scaffold_20           28040907 56 -  46401353 I
e pteAle1.KB030580              19639434 0 -  23789964 C
e cerSim1.JH767782               7113863 0 -  14545593 C
e orcOrc1.KB316907              11144783 0 +  17242564 C
e otoGar3.GL873541              21542897 389 -  23169006 I
e saiBol1.JH378179               2735281 0 +  10880647 C

a score=8047.000000
s hg38.chr8_KI270814v1_alt          8546 3 +    141812 gga
s panTro4.chr8                  54949571 3 + 143986469 gga
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  58987570 3 + 153482349 gga
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48079473 3 + 100215132 gga
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                  61629468 3 + 150158102 gga
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58302269 3 + 146850525 gga
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53228811 3 + 139301422 aga
i chlSab2.chr8                 C 0 C 0
s dasNov3.JH567436               1555833 3 -   2788317 ggt
i dasNov3.JH567436             C 0 C 0
s sarHar1.chr1_GL834688_random   1025209 3 +   3395230 AAG
i sarHar1.chr1_GL834688_random C 0 C 0
s anaPla1.KB744685                101243 3 +    135447 GGA
i anaPla1.KB744685             C 0 N 0
s anoCar2.chr1                 148794905 1 + 263920458 --A
i anoCar2.chr1                 C 0 I 3
s latCha1.JH135710                  5433 3 +      6215 GAA
i latCha1.JH135710             C 0 C 0
e zonAlb1.KB913084               1452264 2549 +   4964275 I
e allMis1.JH736069                100325 945 -    290924 I
e calJac3.chrUn_GL286234            2395 0 +    110629 C
e melUnd1.JH556615               5052772 1 -  27607347 I
e taeGut2.chr3                  14009029 6010 - 112617285 I
e equCab2.chr15                 84375167 0 +  91571448 C
e speTri2.JH393342               4215461 0 -   9676502 C
e triMan1.JH594629              10389505 49 +  24341844 I
e loxAfr3.scaffold_20           28040907 56 -  46401353 I
e pteAle1.KB030580              19639434 0 -  23789964 C
e cerSim1.JH767782               7113863 0 -  14545593 C
e orcOrc1.KB316907              11144783 0 +  17242564 C
e otoGar3.GL873541              21542897 389 -  23169006 I
e saiBol1.JH378179               2735281 0 +  10880647 C

a score=6680.000000
s hg38.chr8_KI270814v1_alt          8549 3 +    141812 gtt
s panTro4.chr8                  54949574 3 + 143986469 gtt
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  58987573 3 + 153482349 gtt
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48079476 3 + 100215132 gtt
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                  61629471 3 + 150158102 gtt
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58302272 3 + 146850525 gtt
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53228814 3 + 139301422 ggt
i chlSab2.chr8                 C 0 C 0
s dasNov3.JH567436               1555836 3 -   2788317 ttc
i dasNov3.JH567436             C 0 C 0
s sarHar1.chr1_GL834688_random   1025212 3 +   3395230 GAT
i sarHar1.chr1_GL834688_random C 0 C 0
s melUnd1.JH556615               5052773 3 -  27607347 ATT
i melUnd1.JH556615             I 1 C 0
s anoCar2.chr1                 148794909 3 + 263920458 ATT
i anoCar2.chr1                 I 3 C 0
s latCha1.JH135710                  5436 3 +      6215 GGT
i latCha1.JH135710             C 0 N 0
e zonAlb1.KB913084               1452264 2549 +   4964275 I
e allMis1.JH736069                100325 945 -    290924 I
e calJac3.chrUn_GL286234            2395 0 +    110629 C
e taeGut2.chr3                  14009029 6010 - 112617285 I
e equCab2.chr15                 84375167 0 +  91571448 C
e speTri2.JH393342               4215461 0 -   9676502 C
e triMan1.JH594629              10389505 49 +  24341844 I
e loxAfr3.scaffold_20           28040907 56 -  46401353 I
e pteAle1.KB030580              19639434 0 -  23789964 C
e cerSim1.JH767782               7113863 0 -  14545593 C
e orcOrc1.KB316907              11144783 0 +  17242564 C
e otoGar3.GL873541              21542897 389 -  23169006 I
e saiBol1.JH378179               2735281 0 +  10880647 C

a score=2490.000000
s hg38.chr8_KI270814v1_alt          8552 14 +    141812 tcactc----------ttgtcatc----
s panTro4.chr8                  54949577 14 + 143986469 tcactc----------ttgtcatc----
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  58987576 14 + 153482349 tcactc----------ttgtcatc----
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48079479 14 + 100215132 tcactc----------ttgtcatc----
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                  61629474 14 + 150158102 ttgctc----------ttgtcatc----
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58302275 14 + 146850525 ttgctc----------ttgtcatc----
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53228817 14 + 139301422 tcgctc----------ttgtcatc----
i chlSab2.chr8                 C 0 C 0
s orcOrc1.KB316907              11144783  6 +  17242564 ----------------ttgtta------
i orcOrc1.KB316907             C 0 C 0
s dasNov3.JH567436               1555839 24 -   2788317 tcatcctcagccctgtttgcattt----
i dasNov3.JH567436             C 0 C 0
s sarHar1.chr1_GL834688_random   1025215 14 +   3395230 AGACCT----------CTCTGATC----
i sarHar1.chr1_GL834688_random C 0 N 0
s melUnd1.JH556615               5052776 14 -  27607347 CTAGTA----------TT----TTAATT
i melUnd1.JH556615             C 0 C 0
s anoCar2.chr1                 148794912 18 + 263920458 TTGTTG----------GTGCTATTGGAT
i anoCar2.chr1                 C 0 C 0
e zonAlb1.KB913084               1452264 2549 +   4964275 I
e allMis1.JH736069                100325 945 -    290924 I
e calJac3.chrUn_GL286234            2395  0 +    110629 C
e taeGut2.chr3                  14009029 6010 - 112617285 I
e equCab2.chr15                 84375167  0 +  91571448 C
e speTri2.JH393342               4215461  0 -   9676502 C
e triMan1.JH594629              10389505 49 +  24341844 I
e loxAfr3.scaffold_20           28040907 56 -  46401353 I
e pteAle1.KB030580              19639434  0 -  23789964 C
e cerSim1.JH767782               7113863  0 -  14545593 C
e otoGar3.GL873541              21542897 389 -  23169006 I
e saiBol1.JH378179               2735281  0 +  10880647 C

a score=9023.000000
s hg38.chr8_KI270814v1_alt      8566 3 +    141812 cag
s panTro4.chr8              54949591 3 + 143986469 cag
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              58987590 3 + 153482349 cag
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48079493 3 + 100215132 cag
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8              61629488 3 + 150158102 cag
i rheMac3.chr8             C 0 C 0
s macFas5.chr8              58302289 3 + 146850525 cag
i macFas5.chr8             C 0 C 0
s chlSab2.chr8              53228831 3 + 139301422 cag
i chlSab2.chr8             C 0 C 0
s dasNov3.JH567436           1555863 3 -   2788317 tgg
i dasNov3.JH567436         C 0 C 0
s melUnd1.JH556615           5052790 3 -  27607347 CTG
i melUnd1.JH556615         C 0 N 0
s anoCar2.chr1             148794930 3 + 263920458 CAG
i anoCar2.chr1             C 0 C 0
e zonAlb1.KB913084           1452264 2549 +   4964275 I
e allMis1.JH736069            100325 945 -    290924 I
e calJac3.chrUn_GL286234        2395 0 +    110629 C
e taeGut2.chr3              14009029 6010 - 112617285 I
e equCab2.chr15             84375167 0 +  91571448 C
e speTri2.JH393342           4215461 0 -   9676502 C
e triMan1.JH594629          10389505 49 +  24341844 I
e loxAfr3.scaffold_20       28040907 56 -  46401353 I
e pteAle1.KB030580          19639434 0 -  23789964 C
e cerSim1.JH767782           7113863 0 -  14545593 C
e orcOrc1.KB316907          11144789 0 +  17242564 C
e otoGar3.GL873541          21542897 389 -  23169006 I
e saiBol1.JH378179           2735281 0 +  10880647 C

a score=45262.000000
s hg38.chr8_KI270814v1_alt      8569 36 +    141812 gctgg-------agtgcagtggcgtgagctcaactcattgcaa
s panTro4.chr8              54949594 36 + 143986469 gctgg-------agtgcagtggcgtgaactcagctcattgcaa
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              58987593 36 + 153482349 gctgg-------agtgcagtggaacgagctcagctcattgcaa
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48079496 36 + 100215132 gctgg-------agtgcagtggcacgagctcagctcgttgcaa
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8              61629491 36 + 150158102 gctgg-------agtgcagcggcgtgatctcagctccttgcaa
i rheMac3.chr8             C 0 C 0
s macFas5.chr8              58302292 36 + 146850525 gctgg-------agtgcagcggcgtgatctcagctcattgcaa
i macFas5.chr8             C 0 C 0
s chlSab2.chr8              53228834 36 + 139301422 ggtgg-------agtgcatcggcatgatctcagctcattgcaa
i chlSab2.chr8             C 0 C 0
s orcOrc1.KB316907          11144789 13 +  17242564 ------------------------------aaaattattGTAA
i orcOrc1.KB316907         C 0 C 0
s cerSim1.JH767782           7113863 12 -  14545593 -------------------------------AAATTATTGTAA
i cerSim1.JH767782         C 0 C 0
s dasNov3.JH567436           1555866 43 -   2788317 gctggatacttcattgttgtgggagctgtcctgtccattgtag
i dasNov3.JH567436         C 0 I 20
s anoCar2.chr1             148794933 35 + 263920458 TTTAG-------AATACTTTTCAGTG-TCTCAATTTTCTGAAA
i anoCar2.chr1             C 0 N 0
e zonAlb1.KB913084           1452264 2549 +   4964275 I
e allMis1.JH736069            100325 945 -    290924 I
e calJac3.chrUn_GL286234        2395  0 +    110629 C
e taeGut2.chr3              14009029 6010 - 112617285 I
e equCab2.chr15             84375167  0 +  91571448 C
e speTri2.JH393342           4215461  0 -   9676502 C
e triMan1.JH594629          10389505 49 +  24341844 I
e loxAfr3.scaffold_20       28040907 56 -  46401353 I
e pteAle1.KB030580          19639434  0 -  23789964 C
e otoGar3.GL873541          21542897 389 -  23169006 I
e saiBol1.JH378179           2735281  0 +  10880647 C

a score=3600.000000
s hg38.chr8_KI270814v1_alt     8605 1 +    141812 c
s panTro4.chr8             54949630 1 + 143986469 c
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58987629 1 + 153482349 c
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48079532 1 + 100215132 c
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61629527 1 + 150158102 c
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58302328 1 + 146850525 c
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53228870 1 + 139301422 c
i chlSab2.chr8             C 0 C 0
s orcOrc1.KB316907         11144802 1 +  17242564 C
i orcOrc1.KB316907         C 0 C 0
s dasNov3.JH567436          1555929 1 -   2788317 c
i dasNov3.JH567436         I 20 C 0
e zonAlb1.KB913084          1452264 2549 +   4964275 I
e allMis1.JH736069           100325 945 -    290924 I
e calJac3.chrUn_GL286234       2395 0 +    110629 C
e taeGut2.chr3             14009029 6010 - 112617285 I
e equCab2.chr15            84375167 0 +  91571448 C
e speTri2.JH393342          4215461 0 -   9676502 C
e triMan1.JH594629         10389505 49 +  24341844 I
e loxAfr3.scaffold_20      28040907 56 -  46401353 I
e pteAle1.KB030580         19639434 0 -  23789964 C
e cerSim1.JH767782          7113875 0 -  14545593 C
e otoGar3.GL873541         21542897 389 -  23169006 I
e saiBol1.JH378179          2735281 0 +  10880647 C

a score=59988.000000
s hg38.chr8_KI270814v1_alt     8606 34 +    141812 ctccacctcctgagttcaagcgattctcctgcgt
s panTro4.chr8             54949631 34 + 143986469 ctccacctcctgagttcaagcgattctcctgcgt
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58987630 34 + 153482349 ctccacctcctgagttcaagcgattctcctgcgt
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48079533 34 + 100215132 ctccacctcctgagttcaagcgattctcctgcat
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61629528 34 + 150158102 ctccacttcctgagttcaagcgattctccttcct
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58302329 34 + 146850525 ctccacttcctgagtccaagcgattctccttcct
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53228871 34 + 139301422 ctccacctcccgagttcaagcgattctcctgcct
i chlSab2.chr8             C 0 C 0
s speTri2.JH393342          4215461 12 -   9676502 ------TTCC-----TTAAGGGG-----------
i speTri2.JH393342         C 0 C 0
s dasNov3.JH567436          1555930 34 -   2788317 ctctacctagtaggtgccagtagtccccctacct
i dasNov3.JH567436         C 0 I 496
e zonAlb1.KB913084          1452264 2549 +   4964275 I
e allMis1.JH736069           100325 945 -    290924 I
e calJac3.chrUn_GL286234       2395  0 +    110629 C
e taeGut2.chr3             14009029 6010 - 112617285 I
e equCab2.chr15            84375167  0 +  91571448 C
e triMan1.JH594629         10389505 49 +  24341844 I
e loxAfr3.scaffold_20      28040907 56 -  46401353 I
e pteAle1.KB030580         19639434  0 -  23789964 C
e cerSim1.JH767782          7113875  0 -  14545593 C
e orcOrc1.KB316907         11144803  0 +  17242564 C
e otoGar3.GL873541         21542897 389 -  23169006 I
e saiBol1.JH378179          2735281  0 +  10880647 C

a score=56690.000000
s hg38.chr8_KI270814v1_alt     8640 29 +    141812 aagcctcctgagtagctgggattacaggc
s panTro4.chr8             54949665 29 + 143986469 aagcctcctgagtagctgggattacaggc
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58987664 29 + 153482349 aagtctcctgagtagctgggattacaggc
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48079567 29 + 100215132 aagcctcctgagtagctgggattacaggc
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61629562 29 + 150158102 aagcctcctgagtagctgggactacaggc
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58302363 29 + 146850525 aagcctcctgagtagctgggattacaggc
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53228905 29 + 139301422 aagcctcctgagtagctgggattacaggc
i chlSab2.chr8             C 0 C 0
s speTri2.JH393342          4215473 23 -   9676502 AAAACTGCCG---AGCTGGTGCTACG---
i speTri2.JH393342         C 0 C 0
e zonAlb1.KB913084          1452264 2549 +   4964275 I
e allMis1.JH736069           100325 945 -    290924 I
e calJac3.chrUn_GL286234       2395  0 +    110629 C
e taeGut2.chr3             14009029 6010 - 112617285 I
e dasNov3.JH567436          1555964 496 -   2788317 I
e equCab2.chr15            84375167  0 +  91571448 C
e triMan1.JH594629         10389505 49 +  24341844 I
e loxAfr3.scaffold_20      28040907 56 -  46401353 I
e pteAle1.KB030580         19639434  0 -  23789964 C
e cerSim1.JH767782          7113875  0 -  14545593 C
e orcOrc1.KB316907         11144803  0 +  17242564 C
e otoGar3.GL873541         21542897 389 -  23169006 I
e saiBol1.JH378179          2735281  0 +  10880647 C

a score=10753.000000
s hg38.chr8_KI270814v1_alt     8669 7 +    141812 acctgcc
s panTro4.chr8             54949694 7 + 143986469 acctgcc
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58987693 4 + 153482349 acct---
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48079596 7 + 100215132 atctgcc
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61629591 7 + 150158102 acctgcc
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58302392 7 + 146850525 acctgcc
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53228934 7 + 139301422 acctgcc
i chlSab2.chr8             C 0 C 0
s speTri2.JH393342          4215496 1 -   9676502 ------C
i speTri2.JH393342         C 0 C 0
s pteAle1.KB030580         19639434 7 -  23789964 ACCTGTC
i pteAle1.KB030580         C 0 C 0
e zonAlb1.KB913084          1452264 2549 +   4964275 I
e allMis1.JH736069           100325 945 -    290924 I
e calJac3.chrUn_GL286234       2395 0 +    110629 C
e taeGut2.chr3             14009029 6010 - 112617285 I
e dasNov3.JH567436          1555964 496 -   2788317 I
e equCab2.chr15            84375167 0 +  91571448 C
e triMan1.JH594629         10389505 49 +  24341844 I
e loxAfr3.scaffold_20      28040907 56 -  46401353 I
e cerSim1.JH767782          7113875 0 -  14545593 C
e orcOrc1.KB316907         11144803 0 +  17242564 C
e otoGar3.GL873541         21542897 389 -  23169006 I
e saiBol1.JH378179          2735281 0 +  10880647 C

a score=27058.000000
s hg38.chr8_KI270814v1_alt     8676 15 +    141812 accacgcccagctaa
s panTro4.chr8             54949701 15 + 143986469 accacgcccagctaa
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58987697 10 + 153482349 -----gcccagctaa
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48079603 15 + 100215132 accatgcctagctaa
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61629598 15 + 150158102 atcacgcccaactaa
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58302399 15 + 146850525 atcacgcccaactaa
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53228941 15 + 139301422 accacgcccagctaa
i chlSab2.chr8             C 0 C 0
s speTri2.JH393342          4215497 15 -   9676502 ATCACGTCCAGTCAC
i speTri2.JH393342         C 0 C 0
e zonAlb1.KB913084          1452264 2549 +   4964275 I
e allMis1.JH736069           100325 945 -    290924 I
e calJac3.chrUn_GL286234       2395  0 +    110629 C
e taeGut2.chr3             14009029 6010 - 112617285 I
e dasNov3.JH567436          1555964 496 -   2788317 I
e equCab2.chr15            84375167  0 +  91571448 C
e triMan1.JH594629         10389505 49 +  24341844 I
e loxAfr3.scaffold_20      28040907 56 -  46401353 I
e pteAle1.KB030580         19639441  0 -  23789964 C
e cerSim1.JH767782          7113875  0 -  14545593 C
e orcOrc1.KB316907         11144803  0 +  17242564 C
e otoGar3.GL873541         21542897 389 -  23169006 I
e saiBol1.JH378179          2735281  0 +  10880647 C

a score=161954.000000
s hg38.chr8_KI270814v1_alt     8691 100 +    141812 tttttgtgtttttagtagagatggtgtttcaccatgctggc-----caggctgttcttg-----------------------aacgcctgacctcaggtgatctgcctgcctcggcctcccaaagtgc
s panTro4.chr8             54949716 100 + 143986469 tttttgtgtttttagtagagatggtgtttcaccatgctggc-----caggctgttcttg-----------------------aacgcctgacctcaggtgatctgcctgcctcggcctcccgaagtgc
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58987707 100 + 153482349 tttttatatttttagtagagatggtgtttcaccatcctggc-----caggctgttcttg-----------------------aatgcctgacctcaggtgatctgcccgcttcggcctcccaaagtgc
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48079618 100 + 100215132 tttttgtatttttagtagagatggtgtttcaccatgctggc-----caggctgttcttg-----------------------aacgcctgacctcaggtgatctgcccgcctcggcctcccaaactgc
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61629613 100 + 150158102 gttttgtatttttagtagagatggtgttttaccatgctgac-----caggctgttcttg-----------------------aacacctagcctcagttgatccacccgcctcagcctcccaaaatgc
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58302414 100 + 146850525 gttttgtatttttagtagagatggtgttttaccatgctgac-----caggctgttcttg-----------------------aacacctgacctcaggtgatccacccgcctcagcctcccaaaatgc
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53228956 100 + 139301422 gttttgtgtttttagtagagatggtgttttaccatgctgac-----caggctgttcttg-----------------------aacacctgacctcaggtgatccgcccacctcggcctcccaaaatgc
i chlSab2.chr8             C 0 C 0
s otoGar3.GL873541         21543286 126 -  23169006 tttttttgttttt--ttgagacagagtctcattatgtcacctttggtagagtgccttagtgtcacagctcacagcaacctccaactcctgggcttaagtgattctcttgcctcagcctcccagtcagc
i otoGar3.GL873541         I 389 C 0
s speTri2.JH393342          4215512   9 -   9676502 -----------------------------------------------------------------------------------------------------------------------TTAGAGTGC
i speTri2.JH393342         C 0 C 0
e zonAlb1.KB913084          1452264 2549 +   4964275 I
e allMis1.JH736069           100325 945 -    290924 I
e calJac3.chrUn_GL286234       2395   0 +    110629 C
e taeGut2.chr3             14009029 6010 - 112617285 I
e dasNov3.JH567436          1555964 496 -   2788317 I
e equCab2.chr15            84375167   0 +  91571448 C
e triMan1.JH594629         10389505  49 +  24341844 I
e loxAfr3.scaffold_20      28040907  56 -  46401353 I
e pteAle1.KB030580         19639441   0 -  23789964 C
e cerSim1.JH767782          7113875   0 -  14545593 C
e orcOrc1.KB316907         11144803   0 +  17242564 C
e saiBol1.JH378179          2735281   0 +  10880647 C

a score=54162.000000
s hg38.chr8_KI270814v1_alt     8791 30 +    141812 tgggattactggtgtgagccaccata-cccg
s panTro4.chr8             54949816 30 + 143986469 tgggattactggtgtgagccaccata-cccg
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58987807 31 + 153482349 tgggattaccggtgtgagccaccataccccg
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48079718 30 + 100215132 tagtattacccgtgtgagccaccgta-cccg
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61629713 30 + 150158102 tgggattacaggtgtgagccaccgta-accg
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58302514 30 + 146850525 tgggattacaggtgtgagccaccgta-accg
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53229056 30 + 139301422 tgggattacaggtgtgagccatcgta-cccg
i chlSab2.chr8             C 0 C 0
s otoGar3.GL873541         21543412 30 -  23169006 tgggactccaggtgcccaccacaatg-cctg
i otoGar3.GL873541         C 0 C 0
e zonAlb1.KB913084          1452264 2549 +   4964275 I
e allMis1.JH736069           100325 945 -    290924 I
e calJac3.chrUn_GL286234       2395  0 +    110629 C
e taeGut2.chr3             14009029 6010 - 112617285 I
e dasNov3.JH567436          1555964 496 -   2788317 I
e equCab2.chr15            84375167  0 +  91571448 C
e speTri2.JH393342          4215521  0 -   9676502 C
e triMan1.JH594629         10389505 49 +  24341844 I
e loxAfr3.scaffold_20      28040907 56 -  46401353 I
e pteAle1.KB030580         19639441  0 -  23789964 C
e cerSim1.JH767782          7113875  0 -  14545593 C
e orcOrc1.KB316907         11144803  0 +  17242564 C
e saiBol1.JH378179          2735281  0 +  10880647 C

a score=2552.000000
s hg38.chr8_KI270814v1_alt     8821 1 +    141812 g
s panTro4.chr8             54949846 1 + 143986469 g
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58987838 1 + 153482349 g
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48079748 1 + 100215132 g
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61629743 1 + 150158102 g
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58302544 1 + 146850525 g
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53229086 1 + 139301422 g
i chlSab2.chr8             C 0 C 0
s otoGar3.GL873541         21543442 1 -  23169006 g
i otoGar3.GL873541         C 0 C 0
s cerSim1.JH767782          7113875 1 -  14545593 A
i cerSim1.JH767782         C 0 C 0
e zonAlb1.KB913084          1452264 2549 +   4964275 I
e allMis1.JH736069           100325 945 -    290924 I
e calJac3.chrUn_GL286234       2395 0 +    110629 C
e taeGut2.chr3             14009029 6010 - 112617285 I
e dasNov3.JH567436          1555964 496 -   2788317 I
e equCab2.chr15            84375167 0 +  91571448 C
e speTri2.JH393342          4215521 0 -   9676502 C
e triMan1.JH594629         10389505 49 +  24341844 I
e loxAfr3.scaffold_20      28040907 56 -  46401353 I
e pteAle1.KB030580         19639441 0 -  23789964 C
e orcOrc1.KB316907         11144803 0 +  17242564 C
e saiBol1.JH378179          2735281 0 +  10880647 C

a score=6490.000000
s hg38.chr8_KI270814v1_alt     8822 2 +    141812 cT
s panTro4.chr8             54949847 2 + 143986469 cT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58987839 2 + 153482349 ct
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48079749 2 + 100215132 cT
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61629744 2 + 150158102 cT
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58302545 2 + 146850525 cT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53229087 2 + 139301422 cT
i chlSab2.chr8             C 0 C 0
s otoGar3.GL873541         21543443 2 -  23169006 ct
i otoGar3.GL873541         C 0 C 0
s orcOrc1.KB316907         11144803 2 +  17242564 TT
i orcOrc1.KB316907         C 0 C 0
s cerSim1.JH767782          7113876 2 -  14545593 TT
i cerSim1.JH767782         C 0 C 0
e zonAlb1.KB913084          1452264 2549 +   4964275 I
e allMis1.JH736069           100325 945 -    290924 I
e calJac3.chrUn_GL286234       2395 0 +    110629 C
e taeGut2.chr3             14009029 6010 - 112617285 I
e dasNov3.JH567436          1555964 496 -   2788317 I
e equCab2.chr15            84375167 0 +  91571448 C
e speTri2.JH393342          4215521 0 -   9676502 C
e triMan1.JH594629         10389505 49 +  24341844 I
e loxAfr3.scaffold_20      28040907 56 -  46401353 I
e pteAle1.KB030580         19639441 0 -  23789964 C
e saiBol1.JH378179          2735281 0 +  10880647 C

a score=28707.000000
s hg38.chr8_KI270814v1_alt     8824 14 +    141812 GTGATAACTTTTTA
s panTro4.chr8             54949849 14 + 143986469 GTGATAACTTTTTA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58987841 14 + 153482349 GTGATAACTTTTTA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48079751 14 + 100215132 GTGATTACTTTTTA
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61629746  9 + 150158102 GTGATAACT-----
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58302547  9 + 146850525 GTGATAACT-----
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53229089 14 + 139301422 GTGATAACTTTTTA
i chlSab2.chr8             C 0 C 0
s otoGar3.GL873541         21543445  8 -  23169006 tt------tttttg
i otoGar3.GL873541         C 0 C 0
s orcOrc1.KB316907         11144805 14 +  17242564 GTGATCACTTTTTC
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84375167 14 +  91571448 GTGAGAACTTTTTC
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7113878 14 -  14545593 GTGGTAACTTTTTC
i cerSim1.JH767782         C 0 C 0
e zonAlb1.KB913084          1452264 2549 +   4964275 I
e allMis1.JH736069           100325 945 -    290924 I
e calJac3.chrUn_GL286234       2395  0 +    110629 C
e taeGut2.chr3             14009029 6010 - 112617285 I
e dasNov3.JH567436          1555964 496 -   2788317 I
e speTri2.JH393342          4215521  0 -   9676502 C
e triMan1.JH594629         10389505 49 +  24341844 I
e loxAfr3.scaffold_20      28040907 56 -  46401353 I
e pteAle1.KB030580         19639441  0 -  23789964 C
e saiBol1.JH378179          2735281  0 +  10880647 C

a score=60853.000000
s hg38.chr8_KI270814v1_alt     8838 13 +    141812 AAGAAGAATTGCC
s panTro4.chr8             54949863 13 + 143986469 AAGAAGAATTGCC
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58987855 13 + 153482349 AAGAAGAATTGCC
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48079765 13 + 100215132 AAGAAGAATTGTC
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61629755 13 + 150158102 AAGAAGAATTGCC
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58302556 13 + 146850525 AAGAAGAATTGCC
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53229103 13 + 139301422 AAGAAGAATTGCC
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       2395 13 +    110629 AAGAAGAATTGCC
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2735281 13 +  10880647 AAGAAGAATTGCC
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21543453 11 -  23169006 --ttgcagttgtc
i otoGar3.GL873541         C 0 C 0
s orcOrc1.KB316907         11144819 10 +  17242564 AAG---AACTGTC
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84375181 13 +  91571448 AAGAACAACTGTC
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7113892 13 -  14545593 AAGAAGAACTATC
i cerSim1.JH767782         C 0 C 0
e zonAlb1.KB913084          1452264 2549 +   4964275 I
e allMis1.JH736069           100325 945 -    290924 I
e taeGut2.chr3             14009029 6010 - 112617285 I
e dasNov3.JH567436          1555964 496 -   2788317 I
e speTri2.JH393342          4215521  0 -   9676502 C
e triMan1.JH594629         10389505 49 +  24341844 I
e loxAfr3.scaffold_20      28040907 56 -  46401353 I
e pteAle1.KB030580         19639441  0 -  23789964 C

a score=174100.000000
s hg38.chr8_KI270814v1_alt     8851 29 +    141812 ATAA----------------------ATACAAAAATAAAATCATTGGTATG
s panTro4.chr8             54949876 29 + 143986469 ATAA----------------------ATACAAAAATAAACTCATTGGTATG
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58987868 29 + 153482349 ATAA----------------------ATACAAAAATAAAATCATTGGTATG
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48079778 29 + 100215132 ATAA----------------------ATACAAAACTAAAATCATTGGTATG
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61629768 29 + 150158102 ATAA----------------------ATACAAAAATAAAATCATTGGTATT
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58302569 29 + 146850525 ATAA----------------------ATACAAAAATAAAATCATTGGTATT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53229116 29 + 139301422 ATAA----------------------ATACAAAAATAAAATCATTGGTATT
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       2408 29 +    110629 ATAA----------------------ATACAAAAATAAAATCATTAGTATG
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2735294 29 +  10880647 ATAA----------------------ATACAAAAATAAAATCATTGGTATG
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21543464 51 -  23169006 attattgtctagctggctggggctgggttcaaacccaccagcctcggtgca
i otoGar3.GL873541         C 0 C 0
s orcOrc1.KB316907         11144829 29 +  17242564 ATAA----------------------ATACAAAAATAAAACCCTTGGTGTG
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84375194 29 +  91571448 ATAA----------------------GTACAAAAATAAAATCATTGGTATG
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7113905 29 -  14545593 ATAA----------------------ATACAAAAATAAAATCATTGGTATA
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19639441 29 -  23789964 ATAA----------------------ATACAAAAATAAAATCATTCGCATG
i pteAle1.KB030580         C 0 C 0
e zonAlb1.KB913084          1452264 2549 +   4964275 I
e allMis1.JH736069           100325 945 -    290924 I
e taeGut2.chr3             14009029 6010 - 112617285 I
e dasNov3.JH567436          1555964 496 -   2788317 I
e speTri2.JH393342          4215521  0 -   9676502 C
e triMan1.JH594629         10389505 49 +  24341844 I
e loxAfr3.scaffold_20      28040907 56 -  46401353 I

a score=53052.000000
s hg38.chr8_KI270814v1_alt     8880 13 +    141812 TATCATTCCTCTT
s panTro4.chr8             54949905 13 + 143986469 TATCATTCCTCTT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58987897 13 + 153482349 TATCATTCCTCTT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48079807 13 + 100215132 TATCACTCCTCCT
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61629797 13 + 150158102 TATGATTCTTCTT
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58302598 13 + 146850525 TATGATTCTTCTT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53229145 13 + 139301422 TATGATTCTTCTT
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       2437 13 +    110629 TATCATTCTTCTT
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2735323 13 +  10880647 TATTGTTCTTCTT
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21543515  3 -  23169006 tgt----------
i otoGar3.GL873541         C 0 C 0
s orcOrc1.KB316907         11144858 13 +  17242564 CAGCACTCTTCTG
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84375223 13 +  91571448 CATCACTCTTCTG
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7113934 13 -  14545593 CATCACTCTTCAG
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19639470 13 -  23789964 CATCACTCTTCTG
i pteAle1.KB030580         C 0 C 0
s triMan1.JH594629         10389554 13 +  24341844 TATTATTTTAATT
i triMan1.JH594629         I 49 C 0
e zonAlb1.KB913084          1452264 2549 +   4964275 I
e allMis1.JH736069           100325 945 -    290924 I
e taeGut2.chr3             14009029 6010 - 112617285 I
e dasNov3.JH567436          1555964 496 -   2788317 I
e speTri2.JH393342          4215521  0 -   9676502 C
e loxAfr3.scaffold_20      28040907 56 -  46401353 I

a score=88686.000000
s hg38.chr8_KI270814v1_alt     8893 15 +    141812 TTTACTTAAAGcaga
s panTro4.chr8             54949918 15 + 143986469 TTTACTTAAAGcaga
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58987910 15 + 153482349 TTTACTTAAAGcaga
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48079820 15 + 100215132 TTTACTTAAAGcaga
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61629810 15 + 150158102 TTTAGTTAAAGcaga
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58302611 15 + 146850525 TTTAGTTAAAGcaga
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53229158 15 + 139301422 TTTACTTAAAGcaga
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       2450 15 +    110629 TTTGCTTTAAGcaga
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2735336 15 +  10880647 TTTGCTTTAAGcaga
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21543518  1 -  23169006 --------------g
i otoGar3.GL873541         C 0 C 0
s orcOrc1.KB316907         11144871 15 +  17242564 CTTACTTAGAGcagg
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84375236 14 +  91571448 TTTGCTTACAGCA-g
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7113947 15 -  14545593 TGTACTTAAAGcagg
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19639483 15 -  23789964 TTTACTTAAAGcagg
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20      28040963 15 -  46401353 TTTCTTTAAAGcagg
i loxAfr3.scaffold_20      I 56 C 0
s triMan1.JH594629         10389567 13 +  24341844 --TCTGTAAAGcagg
i triMan1.JH594629         C 0 C 0
e zonAlb1.KB913084          1452264 2549 +   4964275 I
e allMis1.JH736069           100325 945 -    290924 I
e taeGut2.chr3             14009029 6010 - 112617285 I
e dasNov3.JH567436          1555964 496 -   2788317 I
e speTri2.JH393342          4215521  0 -   9676502 C

a score=1046458.000000
s hg38.chr8_KI270814v1_alt     8908 181 +    141812 ggtttt----taacctcagcactgt--tgatattttggaatggataattctttgacatttaggactaacctgtgcattgtaggacgttaagttgcattactagcttctactcactagatggtagtagca------ctt-ggaattgtaacaaccattaatgtatctagttattttcatatgtgcc-ttggaggag
s panTro4.chr8             54949933 178 + 143986469 ggtttt----taacctcagcactgt--tgatattttggaatggataatt---tgacatttaggactaacctgtgcattgtaggacgttaagttgcattactagcttctactcactagatggtagtagca------ctt-ggaattgtaacaaccattaatgcatctagttattttcatatgtgcc-ttggaggag
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58987925 181 + 153482349 ggtttt----taacctcagcactgt--tgatattttgggatggataattctttgacatttaggactaacctgtgcattgtaggatgttaaattgcattactagcttctactcactagatggtagtagca------ctt-ggaattgtaacaaccattaatatatctagttattttcatatgtccc-ttggaggag
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48079835 181 + 100215132 ggtttt----taacctcagcactgt--tgatattttgggatggatgattctttgacatttaggactaacctgtgcattgtagggtgttaagttgcattactagcttctactcactagatggtagtagca------ctt-ggaattgtaacaaccattaatgtatctagttattttcatatgtccc-ttggaggag
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61629825 178 + 150158102 ggtttt----taacctcagcactgt--tgatattttggtatagataatt---tgacatttaggactaacctgtgcattgtaggatgttaagttgcattactagcttctacccactagatggtagtagca------ctt-ggaattgcaaccaccattaacgtatctagttattttcatatgtccc-ttggaggag
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58302626 178 + 146850525 ggtttt----taacctcagcactgt--tgatattttgggatagataatt---tgacatttaggactaacctgtgcattgtaggatgttaagttgcattactagcttctacccactagatggtagtagca------ctt-ggaattgcaaccaccattaatgtatctagttattttcatatgtccc-ttggaggag
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53229173 178 + 139301422 ggtttt----taaactcagcactgt--tgatattttgggatagataatt---tgacatttaggactaacctgtgcattgcaggatgttaagttgcattactagcttctacccactagatggtagtagca------ctt-ggaattgcaaccaccattaatgtatctagttattttcatatgtccc-ttggaggag
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       2465 183 +    110629 ggtttt----taatctcagcactgc--tgatattttggtatggatcattctttgacatttagaactaacctgtgcactgtaggatgttaagttgcatttctagcttatacccggtagatgctaacagcac----cctt-tgaattgtgacaaccattgatgtttctagttatttttgtttgtcgt-ttgaagggg
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2735351 183 +  10880647 ggtttt----taatctcagcactgt--tgatattttggggtggatcattctttgacatttaggactaacctgtgtattgtaggatgttaagttacatttctaacttatacccagtagatgctaacagcac----cctt-tgaattgtgacaaccattaatgtttctagttatttttgtttgtcct-ttggaggag
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21543519 187 -  23169006 ggctgtgccgtaaccgctgtgctatggcgccgagccaggacagataattctttaatgtttaggactga--tgtgcattgtaggctagttagtagcatccctggtttctacccactagatactagaagtat----ccct-ccagtcctgacaaccgtaaatgtttccagatatctttaaatatcct-ttggagggt
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4215521 152 -   9676502 AGCTGC----TCacctctgcattgc--tggcatgttagagtggctagttctttgatgttcaggactgacctgtgcactgaaggacctttag-----------------------aagatcttggcagca-----cccc-ccaagtgtgacaaccatgag----tccagatgttttcagatgtcct-gtggTG---
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907         11144886 185 +  17242564 gtttct----cagtctcagcgctgt--tgacagtttaggctggaccattcttggatgcgtgggactgatctgtgcactgtaggatgttgagcggcttccctggcccccgaccactagatgccagtagtacctcctccc-caagttgtgacaaccatggatgtttctagatattttcacaggtccc-tc--ggggg
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84375250 185 +  91571448 atttct----caacctcaacattac--tgatgttgtagactgggtaattctttgatgggcaggactgtcctctgaactgtagcatgtttagcagcatccctggcctctacccattagatgccagtagcattaaccgcc-caagttgagacaaccatgaatgtttctagatgttttcaaatgcctt-tt--ggggg
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7113962 183 -  14545593 gtttct----caacctcagcattac--tgacattttaggctggataa-tctttgatgtgcaagactgtcctgtgtgctgtaggata---ggcagcatccctgacctctacccattagatgctagtagcaccaacccccacaagttgtgacaactatgaatgtttccagatattttcaaatgtctt-ttg-ggggg
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19639498 171 -  23789964 gtttct----aaacctcggcatcgt--tgacatt-caggccagataa-tctgtgatgtgcagggctgtcctgtgcactataggacgtgtaacagcacccctggcctctgctctctaggtgctggc-gtatcacaccca-caagctgtgac------------taccagatattttccaatgttcc-tta-ggggg
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20      28040978 179 -  46401353 gtttct----cag-ctcagcactgt--tgacatcatgggccgggtagttgtttgttgtgggg-gctggcctgtgtgttgtaggatatctagcagcattcatggcctctacccgctag-tgccagtagca--cccttta-ccaattgtgacagccttgaatgttttcagacattttcaaatgcccc-ttaggg---
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10389580 180 +  24341844 gtttct----cagcctctgcactat--tgagattttgggccgggtagttctttgttgtggggagctgtcctgtgcattgtaggatgtctagcagcattcatggcctctgcccactggatgccagtagca--ccctccc-ctagttgtgacagccttgaatgttctt---cattttcaaatgcccctttgggg---
i triMan1.JH594629         C 0 C 0
e zonAlb1.KB913084          1452264 2549 +   4964275 I
e allMis1.JH736069           100325 945 -    290924 I
e taeGut2.chr3             14009029 6010 - 112617285 I
e dasNov3.JH567436          1555964 496 -   2788317 I

a score=4083650.000000
s hg38.chr8_KI270814v1_alt     9089 702 +    141812 caaaattgcctcctgttaagaaccacAGACTTATAGTATG-TAggcgatggcagtggagagatgtagtgaaattagtagattggagagag---------attta-------------aaaggactgagtgatggctgggaaagtacagatagaaaataaggtgtcaaggatggactcctgtgtttctggtttgaacaacagggtagatggaagcactgttttctgag-gtagggagccctaaaagtggagagcttgttcaggggatagagtatttcaaggtggtaaatatgt--agcccct-aaacagtgcttggtatgtagtaaacactc----aatTTTTGCTGAGTAAGTGAAGgctgactttaaggtatctg--------------------------------------------------------------------------------------------------------------------------------------------------------------------------tgagacat-----------------------aaaat------aggagataggtagcta----aggaatcatgcagtaggagctaggtagctggaccagagatgtaaatttgggaatAGAGATGGGT-AAATGTACTTGGTTGAAAACTCAGGGATAGGGTATAC-CAGcagaccctactggag-tattctgta--gtatct-gag-ctgtgatat-----atgacatgtg--caccatatttctgaattctgaaacacatatatctgtaagagttttgcataaggaatca--gacctATGGCT--TTTATTA---GCCTTTC----AGTCTC-ATTCTATTTTGCATCTTCTGTGTTTGGCACTGTTAGTCACCCCCTCTGT-------TGTAATGT---------------------------------------ACTGTCTT--CTCAATTTCCATT---------------GATAC
s panTro4.chr8             54950111 701 + 143986469 caaaattgcgtcctgttaagaaccacAGACTTAcagtatg-taggcgatggcagtggagagatgtagtgaagttactagattggagagag---------attta-------------aaaggactgagtgatggctgggaaagtacagatagaaaataaggtgtcaaggatg-actcctgtgtttctggcttgaacaacagggtagatggaagcactgttttctgag-gtagggagccctaaaagtggagagcttgttcaggggatagagtatttcaaggtggtaaatatgt--agtccct-aaacagtgcttggtatgtagtaaacactc----aatttttgctgagtaagtgaaGGCTGACTTTAAGGTATGTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAGACAT-----------------------AAAAT------AGGAGATAGGTAGCTA----AGGAATCATGCAGTAGGAGCTAGGTAGCTGGACCAGAGATGTAAATTTGGGAATAGAGATGGGT-AAATGTACTTGGTTGAAAACTCAGGGATAGGGTATAC-CAGcagaccctactggag-tattctgta--gtatct-gag-ctgtgatat-----atgacatgtg--caccatatttctgaattctgaaacacatatatctgtaagagttttgcataaggaatca--gacctATGGCT--TTTATTA---GCCTTTC----AGTCTC-ATTCTAGTTTGCATCCTCTGTGTTTGGCACTGTTAGTCACCCCCTCTGT-------TGTAATGT---------------------------------------ACTGTCTT--CTCAATTTCCATT---------------GATAC
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58988106 700 + 153482349 caaaattgcctcctgttaagaaccacAGACTTATAGGCTG-TAggtgatggcagtggagagatgtagtgaagttagtagattggagtgag---------attta-------------aaaggactgagcgatggctgggaaagtacagatagaaaataaggtgtcaaggatg-actcctgtgtttctggcttgaacaacagggtagatggaagcactgtttcctgag-gtagggagccctaaaagtggagagcttgttt-ggggATAGAGTATTTCAAGGTGGTAAATGTGT--agcccct-aaacagtgcttggtatgtagtaaacactc----aatttttgctgagtaagtgaaGgctgactttaaggtatctg--------------------------------------------------------------------------------------------------------------------------------------------------------------------------tgagacat-----------------------aaaat------aggagataggtaggta----aggaatcatgcagtaggagctaggtagctggaccagagacgtaaatttgggaatAGAGATGGGT-AAATGTACTTGGTTGAAAACTCAGGGACAGGGTATAC-CAGCAGACCCTACTGGGG-TATTCTGCA--GTATCT-GAG-CTGTGATAT-----ATGACATGTG--GACCATATTTCTGAATTCTGAAACACATATATGTGTAAGAGTTTTGCATAAGGAATCA--GACCTATGGCT--TTTATTA---GCCTTTC----AGTCTC-CTTCTATTTTGCATCTTCTGTGTTTGGCACTGTTAGTCACCCCCTCTGT-------TGTAATGT---------------------------------------GCTGTCTT--CTCAATTTCCATT---------------GACAC
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48080016 701 + 100215132 caaaattgcctcctgttaagaaccacAGACTTATAGTTTA-TAggtgatggcagtggagagatggagtgaagttagtagattggagagag---------attta-------------aaaggactgagtgatggctgggaaagtactaatcgaaaataaggtgtcaaggatg-actcctgtgtttctggcttgaacaacagggtagatggaaacactgttttctgag-gtagggagccctaaaagtggggagcttgttcaggggatagaGTATTTCAaggtggtaaatatgt--agcccct-aaacagtgcttggtatgaagtaaacactc----aatttttgctgagtaagtgaaGgctgactttaaggtatctg--------------------------------------------------------------------------------------------------------------------------------------------------------------------------tgagacat-----------------------aaaat------aggagataggtagcta----aggaatcatgcagtaggagctaggtagctggaacagagatgtaaatttgggaatAGAGATGGGC-AAATGTACTTGGTTGAAAACTCAGGGACAGGGTGTAC-CGGCAGACCCTACTGGGG-TATTCTGCA--GTATCT-GAG-CTGTGATAT-----ATGACATGTG--CACCATACttctgaattctgaaacacatatgtctgtaagagttttgcataaggaatCA--GATCTATGGCT--TTTATTA---GCCTTTC----AGTCTC-ATTCTATTTTGCATCTTCTGTGTTTGGCACTGTTAGTCACCCCCTCTGT-------TGTAATGT---------------------------------------GCTGTCTT--CTCAATTTCCATT---------------GACAC
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61630003 701 + 150158102 caaaattgcctcctgttaggaaccaTAGAGTTATAGTCTT-TAggtgacggcagtggagagatggagtgaagttagtagattggagagag---------attta-------------aaaggactgagtgatggctgggaaagtacaaatagaaaataaggtgtcaaggatg-actcctgtgtttctggcttgaacaacagggtagatggaagcactgttttctgag-gaagggagccctaaaagtgaggagcttgttcaggggatagaGTATTTCAAGGTGATAAATATGT--agcccct-aaacagtgcttggtatgtagtaaacactg----aatttttgctgagtaagtaaaGgctgactttaaggtatctg--------------------------------------------------------------------------------------------------------------------------------------------------------------------------tgagacat-----------------------aaaat------agtagataggtagcta----aggaatcatgcagtaggagctaggtggctggaccagagatctaaatttgggaatAGAGATGGGT-AAATGTACTTGGTTGGAAACTCAGAGACAGGGTATAC-CAGCAGACCCTACTGGGG-TATTCTGCA--GTATCT-GAG-CTGTGATAT-----ATGACATGTG--CACCGTATTTATGAATTCTGAAACACATATATCTGAAAGAGTTTTGCATAAGGAATCA--GTCCTATGGCT--TTTATTA---GTTTTTC----AGTCTC-ATTCCATTTTGCGTCTTCGGTGTTTGGCACTGTCATTCACCTCCTCTGC-------TGTAATGT---------------------------------------GCTGTCTT--CTCAATTTTCATT---------------GATAC
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58302804 701 + 146850525 caaaattgcctcctgttaggaaccaTAGAGTTATAGTCTT-TAggtgacggcagtggagagatggagtgaagttagtagattggagagag---------attta-------------aaaggactgagtgatggctgggaaagtacaaatagaaaataaggtgtcaaggatg-actcctgtgtttctggcttgaacaacagggtagatggaagcactgttttctgag-gaagggagccctaaaagtgaggagcttgttcaggggatagaGTATTTCAAGGTGATAAATATGT--agcccct-aaacagtgcttggtatgtagtaaacactg----aatttttgctgagtaagtaaaGGCTGACTTTAAGGTATCTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAGACAT-----------------------AAAAT------AGTAGATAGGTAGCTA----AGGAATCATGCAGTAGGAGCTAGGTGGCTGGACCAGAGATCTAAATTTGGGAATAGAGATGGGT-AAATGTACTTGGTTGGAAACTCAGAGACAGGGTATAC-CAGCAGACCCTACTGGGG-TATTCTGCA--GTATCT-GAG-CTGTGATAT-----ATGACATGTG--CACCGTATTTATGAATTCTGAAACACATATATCTGAAAGAGTTTTGCATAAGGAATCA--GTCCTATGGCT--TTTATTA---GTTTTTC----AGTCTC-ATTCCATTTTGCATCTTCGGTGTTTGGCACTGTCATTCACCTCCTCTGC-------TGTAATGT---------------------------------------GCTGTCTT--CTCAATTTTCATT---------------GATAC
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53229351 701 + 139301422 caaaattgcctcctgttaggaaccaTAGAGTTATAGACTT-TAggtgatggcagtggagagatggagtgaagttagtagattggagagag---------attta-------------aaaggactgagtgatggctgggaaagtacagatagaaaataaggtatcaaggatg-acttctgtgtttctggtttgaacaacagggtacatggaagcactgttttctgag-gtagggagccctaaaagtgaggagcttgttcaggggatagaGTATTTCAAGGTGGTAAATATGT--agcccct-aaacagtgcttggtatgtagtaaacactg----aatttttgctgagtaagtaaaGGCTGACTTTAAGGTATCTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAGACAT-----------------------AAAAT------AGGAGATAGGTAGCTA----AGGAATCATGCAGTAGGAGCTAGGTGGCTGGAACAGAGATCTAAATTTGGGAATAGAGATGGGT-AAATGTACTTGGTTGGAAACTCAGGGACAGGGTATAC-CAGCAGACCCTACTGGGG-TATTCTGCA--GTATCT-GAG-CTGTGATAT-----ATGACATGTG--CACCGTATTTCTGAATTCTGAAACACATATATCTGAAAGAGTTTTGCATAAGGAATCA--GACCTATGACT--TTTATTA---GTTTTTC----AGTCTC-ATTCCATTTTGCATCTTCGGTGTTTGGCACTGTTATTCACCTCCTCTGC-------TGTAATGT---------------------------------------GCTGTCTT--CTCAATTTCTATT---------------GATAT
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       2648 636 +    110629 ctaaattgcctcctgttaagaaccactggctt--agtcag-cagatgatggcagtgg--------agtgaagttcgttgattggagagac---------attta-------------gaaggactgagtgattgctaggaaagtacagatagtaaataaggtgtcaaggata-actcctgtgtttctggcttgaacaatagggtcgatggatgcactgttgtctgag-gtagggaacactgaaagtagggagcttgcccagggaatagagcaTTTCAAGGTGGTAAATATGT--AGCCCCT-AAACGGTGCTTGGTATGTAGTAGACACTC----AGTTCTTGCTGATTAAGTGAAGGCTGACTTTAAGGTATCTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAGACTT-----------------------ATAAT------ACGTTATAGGTAGCTA----AGCAATCATGTAGTAGGAATGAGGTTGCTGGACCAGAGATGTAAATTTGGGAATAGAGACAGGT-AAATGTACTCGGTTGAAAACCCAGGGACAGAGTTTAC-CAGCAGACCCTACTGGAG-TATTCTGCA--GTATCT-GAG-CTGTGATAT-----GTGACATATG--CGGCATATTTCTGAATTCTGAAACACA------TGTGAGAGTTTT-----------------------GCT--TTTCTTA---GC----------------------------------------TGGCACTGTTAGTCACCCCCTCCGTCGTAATGTGCTGTGT---------------------------------------GCTGTCTT--CTCAGTTTCCATT---------------GACAC
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2735534 650 +  10880647 ctaaattgcctcctgttaagaaccactgGCTT--AGTCTG-CAGGTGATGGAGGTGG--------AGTGAAGTTTGAAGATTGGAGAGAG---------ATTTA-------------GAAGGACTGAGTGATTTCTAGGAAAGTACAGATAagaaataaggtgtcaaggatg-actcctgtatttctggcttgaataatagggttgatggatgaactgttgtctgag-acagggaaccctgaaagtagggagcttgctcagggaatagagcaTTTCAAGTTGGTAAATATGT--AGCCCCT-AAAGAGTGTTTGGTATGTAGTAGACACTC----AATTTTTGCTGATTAAGCGAAGGTTGACTTTAAGGTATCTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAAACTT-----------------------ATAAT------AGGTTATAGGTAGCTA----AGGAATCATATAGTAGGAACGAGGTTGCTGGACCAGAGATGTAAATTTGGGAATAGAGACGGGT-AAATGTACTTGGTTGAAAACCCAGAGACAGAGTATAC-CAGCAGACCCTACTGGAG-TATTCTGCA--GTATCT-GAG-CTGTGATAC-----ATGACATATG--CACCATATTTCTGAATTCTAAAACACA------TGTAAGAGTTTTGCGTAAGGAATCA--TACCTACAGCT--TTTCTTA---GC----------------------------------------TGGCGCTGTTACTTACCCACTCTGT-------TGTTACGT---------------------------------------TCTGTCTT--CTCAGTTTCCATT---------------GACAC
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21543706 683 -  23169006 gaaatgagggtcctgttaataaccactgCTTTA-GTTCTA-TAggtgatagcattagacagatggagtgaagtgaatagattggagagag---------atttc-------------aaaggacggagtgattaatgag-aagtgcaggttggaaatgaggtgtccagggtg-actcccaggtttctggcttaaaccgtaggctagatggaagaactcttttctgag-gtagagtaccctgcaagtg-ggtgtgagttgaggggacagaGCTTTTCAGGTGGGTGtatatattcagcccct-cagtagtgcttggcaggtagtagacactcagtgaatttttgctgcataaatgaatGCTGACTTTAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAT-----------------------AGAAT------GGGAGCTGGGTGGTTAAACCAGTAGTCGTATAtcaggag-agggtagctgagccagcgatataaatttgggaatAGGGATGTGTAAAAAGTGTTTGGTTGAAAACCCAAGGACCAAGCATAC-GAACGGATACTGCTGGGA-TATTCCATC--ATATCT-GAG-ATGTGATGT-----TTGATGCATG--CGCTGTTTttctgaattcttaaacacgtatgtctgtaagagttttgcataagggatta----------tCT--TTT---------TTCTG----AGTCTC-GTTCTGTTTTGCATCTTCTGTGTTGGACAGTGTTAGGGACCTCCTCTGT-------GGTGACGT---------------------------------------GCTGTCTT--CTCAGTTTCCATG---------------GACAC
i otoGar3.GL873541         C 0 I 123
s speTri2.JH393342          4215673 698 -   9676502 CCATATTTCCTCTACT------------------AGTCGA-TAGGTGACAGCAGTGAAG---TGGGGTGGAGTGAATGAATTGGAGAGAGACTTGGGTAATTTA-------------GAAGGGGTGGAAGATTGATGGG-TAGTGCGGGTAGAAAATAAGG----------A-AGTCCCAGCTTCCATACTTTA-------------------------------------------CTCAAAAGTGGGGGTCATTTTGAGGATATAGTGCATTTCAAGTGGGTATTTATTc--agcccctaaaacaatgtttggtgtatagtaaacactcaataagtatttgttgagtaaat-aaTGTTGACTTTAAG-TAACTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGGCAT-----------------------GTAAT------GGCAGTTGGGTAGCTA----GGTCTACACATATTGGGATCTGGATAGGAGGATTAGAGATATAAATTTGGAAATAGAGATATGTAAAAGGTACTTAATGTAAAACCCAGGGACAGAGCATAC-TAACAGTTCCTGCTGGAG-TGTTCCATA--ATACCT-GAC-AAGTGATAT-----ATAACATTTGTCCATTATTTTTCAAAATTTGGAAACACAAATGTCTGCAAGAGTTTTGCACAATAAATCA--GCCCAGCAGCT--TTTGATGAGTGCTTTTCT--AAGACTC-ACTTTATTTTGCATGGTCTGTGTTT-ACACTATTCATCACC-CTTCTGT-------TGTGTTCTTCACCAATCAACGGTTAAAAGTTCTTGAAGTTTGAGTTAGTTTTttt--tttaatatttattttttagttgtagttggacac
i speTri2.JH393342         C 0 I 2
s orcOrc1.KB316907         11145071 684 +  17242564 catagccacctccaggtaaggactactgGCTT--AGTCTA-GGAGTGGCAGCAGTGGAGCGTTGGAGTGAGTCTGACACATTGGAGGGAG---------ATTTAGAAGGTACATTTGGAAGGATTTAGTGATTGATGGG-AA----------AAAGGA---TATC-AGGAGG-ACTCCAG-GTTCCTGGTGTGAACAGTCAGGTAGATGGAAGCACTGTTTTCTGAGTGTAGAGAACCCTGGAGGTGGGGAGCATGTCTAGGGGATA-AGCGTTTCAAACAGGTATATAGT-----cacctaaaacagtgcttcatatgtagtaaacactc--tgggtatttgctgaataagtgCCTGTTGACTTTAGGGTGTCCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAGGCAGT----------------------TCATC-------GATGCT-GGGGAGCT----GGTG----------------TGGAGGTCTGGGCCAGAGATGTTCACTGGAAAGTAGACGTGTGCAGCGCTTACTTGGTTGAACA-CCAGGGGCCGGGTCC---CCGCAGATCTTGCAGGCC-Aatcccgct--gggggt-gtt-ccgtgatatcggtg-------gtg--cactatgtctctgaattctgacgtacatgtggctccaagagttctgtacaaggaatgatggacttgTAACTAATCGATTA---GCTTTTTTCCAAATCTC-ATGCTATTTTGCATCTTCCGTGTTTGAC-TCATGGGTCACCCACTCTGT-------TTTGACCC---------------------------------------AGTGTCTTCCCTCAATTTCCACT---------------GGTGC
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84375435 695 +  91571448 cagaa---cctccagttaagaaccactggctt--agtttg-gggttgacagcag-agagagagagagtgaggtgagtaggttggacagag---------atttagaacgtaaatttggaaggacttagtgatggatggg-aagtgcaagtaggaagaaaa-tgtcaaggatg-attccag-gttcctggcttgggtgatagggtagatggaagcaccattttctcat-ggagggaaccctggagctggggagcatgttta-gggata-agCCTTTCAAGCAGGTATGTAATc--agcacctgaaacagtgcttggtatgtaggaaacgctgaactattatttgccgaataaacggatGTTGACTGTGAAGTGTCTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAGACATA----------------------ACAAT------AGGAGCT-GGTAGCTG----AGTG----------------TCGAGGTCTGGCACAGAGATGGAAATTGGGGAGTAGAGGTGTGTAAA----ACATGGTTGAACACCCCAGGGCAGGGTGTAACCAGCAGATCCTGCCAGCA-CGTCTTGCT--GCAGGGGGTT-CTATATTATCTGTGATGGCACAGG--CACTGTGTttctgaattctgaaatatatatggccccaagaattttgcacaaggaatcatagacctATAGCTAATTGATTA---GCTTTTTTCTAAACCTT-GTTGTATTTTACATCTTCCGTGTTTGAC-CTGGTGGTCACCTCC-----------------TCT---------------------------------------GTTTTCTTCTCTTCGTTCCCATT---------------GACGC
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7114145 704 -  14545593 caaaa---ccttcagttaagaaccactggctt--agtcta-ggggtgacagcagtggagagagagaatgaggcgaatagattggagagag---------atttagaaggtaaatttggaaggacttagtgatcgatggg-aagtgcaggtaggaagaaagttgtcaagggtg-actttgg-gttcctggcttggatgatagggtagatggaagcaccatttttttag-gtagggaaccctggagctggagaacatgtttaggggata-agcatttcaagcaggtttatattc--agcacctgaaacagcgcttgatatgcagtaa---ctcaacgaatatttgctgaataaatgaatgttgacttcaaagtatctg--------------------------------------------------------------------------------------------------------------------------------------------------------------------------tgagacat-----------------------acagt-------ggagct-ggtagctg----agtg----------------tagaggtctgggccagaggtgtaaattggggagtagaggtgtgtaaaacttacttggttgaaca-ccgagggcagagtgtaACCAGCAGATCCTGCCAGCA-GATCTTGCT--GTGGGCGGTT-CCATAATATCTGTGATGGCACGTG--CACTGTGTttctgaattctgaaatacatatggctcccagagttttgcacaaggaatcagggacctATAGCTAATGGACTA---GCTTTTTTCTAAATCTC-GTTGTATTTTGCATATTCAGTGTTTGAC-CTGGTGGTCACCCCC--TGT-------TTCGATGT---------------------------------------GCTGTCTTCTCTCAGTTTCCATT---------------GACGC
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19639669 877 -  23789964 caatactgcctccctttaagaaccgttgGCTT--CGTCTA-GGGGCGACGGCAGTGGAAAG---GAGTGAGATAAATAGATTGGAGAGAG---------ATTTA-------------GAGGGACTTGGTGATGGATGGG-AAGTGCAAGCATGAACGG---TGTCAAGGATG-AC------------GGCTTGAAATGAAGAGCAGAGGAAAGCACCGTTCTCTGAG-GCACCAAATCCTGGAGGTGGGGGG--TGTCTA-AGGGTA-CACATTGCAAGTGGGCATGTAGTc--agcacctaaaacagtgcttaggatgcagtaaatacttagtgaagctctgctgaataaatgaatATTGACTTTAAAGCAGCCGTCCCCAACCTTTCTGGCACCAGGGACCGGTGCTCCTATGAGAATCTAACGCCTGATGCTCTGAGGCGGAGCTGAGGCGGTGATGCTGGCGCTGGGGAGCGGCTGCAGATACTGATGAAGATTCGCTCACTTGCCAGCTGCTCACCTCCTGCTGTGCGGCCCGGTTCCTAATGGGACATAGATCGGTATCGGTCCCTGTTTCAAAGTATCTGCAGGAGCT-GGTGGCTG----GGTG----------------TAGAAGTCTAGGGCAGAGATGTAAGTTTGAGAGTAGAGATATAGAAAACATACTTGGTTGAACACCTAGGGGCAGAGCATAG-CGGTGGGTCCCACCAGCA-GATCCTGCTGGGAGGGTGGTC-CCCTCATAAGTGTGATGGCACGTG--CACTGTATTTCTGAATTTGGAA--ACACATGATTCCACGAATTTTGCACGAGGAAGCATGGACCTATAGCTAACTGATTA---GCTTTTTTCCAAATCTC-ATTCTCTCTGGTGTCTTCAGTGCTCGAC-TTCTTGGTCATCCCT-CTGT-------TCTGACAT----------------------------------------CCGCCTTCTCTCAGATTCCGCT---------------GAGTG
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20      28041157 673 -  46401353 cagactctcttctggttgagaaccactgGCTT--AGTCta-ggggtgataacacta------------tcagtgaatagattggagagag---------gtttagaaggtgaatttgaaaggacttagtgattgatgcc-aaacgcaggtaggaagaaaggagcctggactg-actctcagatttttggcttgaacagtagggtagatggaagtacagttttctgag-gttgggaaccttggaggaggagagcatgtttagaaatttaaacattttaagtgagtatgtgttc--agcaccaaaaacagtgcctgggacataattaacactcagcgaatatttgctgaataaatgaatgttgag--------accta--------------------------------------------------------------------------------------------------------------------------------------------------------------------------tgagatgt-----------------------ataat------aggagctggggagctg----ggca----------------taaaagtctgggccagagatgtaaatctgggagtAGCGATATGTAAAAACTACTTGGTTGAACACCCAGGGACAGAGtgcac-cagtggattctgctgggg-tgttccatg--atacct-gtt-atgtgatat-----atggcatttg--cactgtattttggaattctgaaatacgtaggtctccaagtgtttcaaacaaagagttgtggacctCGAGCATTTCGA-----------------AGGCTC-ACTCTGTTGTGGGTCTTCAGTGTTTGACC-TATTGGTCTTCT---CTGT-------TTTAATGA---------------------------------------GCTGTCTTCTATCAGTTGCCATT---------------GACGC
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10389760 682 +  24341844 cagactctcttctggtcacgaaccactgCGTT--AGTCTA-Ggggtgataacacta--gagagagagtgaagtgaatagattggagagag---------atttagaaggtaaatttgaaaggatttagtgattgatggg-aagtgcaggtaggaagaagggtgtctatgttg-accctcagatttgtgacttgaacagtagggtagat-gaagtacagttttctgag-gtcgggaaccctcgaggaggagagcatgtttagaggataaaacatttcaagtgggtatagattc--agcaccaaaaacagtg-ctggtatgtaattaacactcagtgaatatttgctgaataaatgaatgttgag--------atctg--------------------------------------------------------------------------------------------------------------------------------------------------------------------------tgagacgt-----------------------atgat------aggagctggggagctg----ggca----------------aagaggtctggtccagagatgtaaatttgggagtAGCGATATGTAAAAACCGCTTGGTTGAACACCCAAGGacagagtgcac-cagcagattcttctgtgg-tgttccatg--atacct-gtgaatgtgctat-----atggtgtttg--cactatattttggaattccgaaatacatatgactccaagcgtttcaaacaaggcgttgtggacctgTAGCTTTTTGA-----------------AGTCTTAACTCTGTTGCGCACCTTCAGTGTCTGACA-TTTTGGTCTTCT---CTGT-------TTTCATGT---------------------------------------GCTGTCTTCT-TCAGTTTCCATT---------------GACAC
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436          1556460 643 -   2788317 ccACATCTCCCCTTTTTGAGAACCTCTGGTTT--AGTCTAGGGGGTGATAACAGTGGAGAGAGAGAGTACAGTCAATAGACTGGAGAGAG---------ATTTAGAAGATAAATCTGAAAGGACTTAATGATTTATG-G-AAGTGCATATAGGAAGAA-----------------------------------------AGGGTAGATGGAAGCACTATTTTGTGAG-GTGGGGATCTT--------GGGAGCATGTTTAAAGAAAAGAGCATTTCAAGTAGGTctgtgttt--agcccctgaaacagtgtctgatatgtaagaaacactcagtgaatatttggtgagttaatgaatGTTGAGTTTAAGATATCTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAGATGT-----------------------GCAGT------AGGAGCTGGGGAGCTG----GGTA----------------GATGGGTCAGGACCAGAGATGTAAGTTGGGGAATAGAGGTGTGCAAAGA-TACTTAGTT-AGCACCCAGGGACAGAGTATAC-AAGCAGGTTCTGCTGGAATTGTTCCATA--ATATCT-GTT-ATGTGACAT-----ATGGTGTATG--AATTATATTTCTGCATTCTGAAACCTGCATGGCTATAAGCTTTGC--ACAAGGAATCCTGGACCTATAGCTGATTGATGA---GCTTTTTTCT-AGTCTC-ACTCTAATTTACAGCTCCAGTTTTTGATATTATTGGTCAACC--------------------------------------------------------------CTATCTTCTCTCAGTTTTCATT---------------GACAC
i dasNov3.JH567436         I 496 C 0
e zonAlb1.KB913084          1452264 2549 +   4964275 I
e allMis1.JH736069           100325 945 -    290924 I
e taeGut2.chr3             14009029 6010 - 112617285 I

a score=31559.000000
s hg38.chr8_KI270814v1_alt     9791 25 +    141812 TGCCTGT---------AATGACTTTT--------CT----CTTCT-----------------------------------------------------------------------G
s panTro4.chr8             54950812 25 + 143986469 TGCCTGT---------AATGACTTTT--------CT----CTTCT-----------------------------------------------------------------------G
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58988806 25 + 153482349 TGCCTGT---------AATGACTTTT--------CT----CTTCT-----------------------------------------------------------------------G
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48080717 25 + 100215132 TGCCTGT---------AATGACTTTT--------CT----CTTCT-----------------------------------------------------------------------G
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61630704 25 + 150158102 TCCCTGT---------AACGACTTTT--------CT----CTTCT-----------------------------------------------------------------------G
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58303505 25 + 146850525 TCCCTGT---------AACGACTTTT--------CT----CTTCT-----------------------------------------------------------------------G
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53230052 25 + 139301422 TCCCTGT---------AATGACCTTT--------CT----CTTCT-----------------------------------------------------------------------G
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       3284 20 +    110629 TGCCTGT---------ACTGACTT-----------------TTCT-----------------------------------------------------------------------G
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2736184 20 +  10880647 TGCCTAT---------ACTGACTT-----------------TTCC-----------------------------------------------------------------------G
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21544512 95 -  23169006 tgcctg----------gctaattttt--------ct----atttttagtagagatgggtcttgctcttgctcaggctgatctggatcctcctgcccagagttccaggattacatgcg
i otoGar3.GL873541         I 123 C 0
s speTri2.JH393342          4216373 42 -   9676502 tacctttattttattcatttatttttatgtggtgct----ttttt-----------------------------------------------------------------------a
i speTri2.JH393342         I 2 C 0
s orcOrc1.KB316907         11145755 29 +  17242564 CACCTGT---------GTTGATTTCC--------CCCTCCCTTCT-----------------------------------------------------------------------G
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84376130 29 +  91571448 CACCTGC---------ACTGGCTTTC--------CTCTTCCTTCT-----------------------------------------------------------------------C
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7114849 29 -  14545593 CACCTGC---------ACTGGCTTTC--------CTCTTCCTTCT-----------------------------------------------------------------------C
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19640546 26 -  23789964 CACCC------------CTGGCCGCC--------CTCTTCCGTCT-----------------------------------------------------------------------G
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20      28041830 29 -  46401353 TGGCTGC---------ACTGGCTTGC--------TTTTTCCTTCT-----------------------------------------------------------------------G
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10390442 29 +  24341844 TGCCTCT---------GTAGGCTTGC--------TTTTTTCTTCT-----------------------------------------------------------------------G
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436          1557103 29 -   2788317 CACCTGC---------TCTGGCTTTC--------CTCTTCTTTCT-----------------------------------------------------------------------T
i dasNov3.JH567436         C 0 C 0
e zonAlb1.KB913084          1452264 2549 +   4964275 I
e allMis1.JH736069           100325 945 -    290924 I
e taeGut2.chr3             14009029 6010 - 112617285 I

a score=785952.000000
s hg38.chr8_KI270814v1_alt     9816 116 +    141812 TAAA--------------CCAACA------------CTT-ACAAGTTTTTGATA----------TTTTGATTTTAATATTTA----------------------------------------------------TAAGAGGAGAAAGAATATTTAGATGTCGTTTCA---------------GAG----------GAAGCAATTTTTATACCATTATGACCCTATTTTT--A
s panTro4.chr8             54950837 116 + 143986469 TAAA--------------CCAACA------------CTT-ACAAGTTTTTGATA----------TTTTGATTTTAATATTTA----------------------------------------------------TAAGAGGAGAAAGAATATTTAGATGTCATTTCA---------------GAG----------GAAGCAATTTTTATACCATTATGACCCTATTTTT--A
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58988831 116 + 153482349 TAAA--------------CCAACA------------CTT-ACAAGTTTTTGATA----------TTTTGATTGTAATATTTA----------------------------------------------------TAAGAGGAGAAAGAATATTTAGATGTTGTTTCA---------------GAG----------GAAGCAATTTTTATACCATTATGACCCTATTTTT--A
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48080742 116 + 100215132 TAAA--------------CCAACA------------CTT-ACAAGTTTTTAATA----------TTTTGATTTTAATATTTA----------------------------------------------------TAAGAGGAGAAAGAATATTTAGATGTTGTTTCA---------------GAG----------GAAGCAATTTTTATACCATTATGACCATATTTTT--A
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61630729 115 + 150158102 TAAA--------------CCAACA------------CTT-ACAAGTTTTTGATA----------TTTTGATTTCAATATTTA----------------------------------------------------TAAGAGGAGAAAGAATATTTAGATGGTGTTTCC---------------GAG----------GAAGCGA-TTTTATACCATTATGATCCTATTTTT--A
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58303530 115 + 146850525 TAAA--------------CCAACA------------CTT-ACAAGTTTTTGATA----------TTTTGATTTCAATATTTA----------------------------------------------------TAAGAGGAGAAAGAATATTTAGATGGTGTTTCC---------------GAG----------GAAGCGA-TTTTATACCATTATGATCCTATTTTT--A
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53230077 115 + 139301422 TAAA--------------CCAACA------------TTT-ACAAGTTTTTGATA----------TTTTGATTTTAATATTTA----------------------------------------------------TAAGAGGAGAAAGAATATTTAGATGGTGTTTCC---------------CAG----------GAAGCGA-TTTTATACCATTATGACCCTATTTTT--A
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       3304 112 +    110629 TAAA--------------CCAAC-----------------ACAAGTTTTTGATA----------TTCTGATTTTAATATATA----------------------------------------------------TAAGAGGAGAAAGAATATATAGATGGTGCTTCA---------------TAG----------GAGGCAATTTTTATACCATTATTACCCTGTTTTT--G
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2736204 112 +  10880647 TAAA--------------CCAAC-----------------ATAAGTTTTTGATA----------TTTTGATTTTAATATGTA----------------------------------------------------TAAGAGGAGAAAGAATATATAGATGGTGTTTCA---------------GAG----------GAAGCAGTTTTTATACCATTATTACCCTGTTTTT--A
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21544607 123 -  23169006 tgag--------------ccaccatacctggccCACTTT-ACAAGTTCTTCATG----------TTTTGATTTTAATTTTTA----------------------------------------------------AAAAAG--GAAAAAATACCT---TGGTGTTTCA---------------GAT----------GAAGTGATTTTTGTACTATTATGACTCTATTTTT--A
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4216415 137 -   9676502 taggatcgaacccagggtctcaca------------cat-gcaaggctgagccacaatcccagcccTTGAATT-AGTTTTTA----------------------------------------------------TAAGCGAAAAAAGAACATTTTGGTGGTGTTTTA---------------GGT----------GAAGCAA--TCTGCACCTTTATGATCCTGTTTTT--A
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907         11145784 139 +  17242564 TACT--------------GCAGTA------------CTC--CAGGTTCCTGGTG----------TTTTGATTTTAATTTTTA----------------------------------------------------TAAGAGGAGTAA-AATATTTTGATGGTGTATCAAAAAAATATTTTGATGGTATATCAAAAAAAAGCAATTTTTATACCCTCATGACCCTATTTAT--A
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84376159 114 +  91571448 TACA--------------CCAACA------------CTC-ACAAATTCGTAGTG----------TTTTGA-GTTAATTTTTA----------------------------------------------------TAAGAGAAGTAG-AATATTTTAGTGGTGTTTCA---------------GGT----------GAAGCAGTTTTTATACCATTATAACCCTATTTTT--A
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7114878 114 -  14545593 TTCA--------------CCAACA------------CTT-ACAAATTCTTTATG----------TTTTCA-TCTAATTTTTA----------------------------------------------------TAAGAGAAGTAA-AATATTTTGATGGTGTTTCA---------------GGT----------GAAGCAGTTTTTATACCATTATAACCCTATTTTT--A
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19640572 114 -  23789964 TAAA--------------GCGACA------------CTT-AC-AGTTCTTGGTG----------TTTTAATTTTCATTTTTA----------------------------------------------------TAAGAGGAGTAA-AATATTTTGTTGGTGTTTCA---------------GGT----------GAAGCAGTTTGTGTACCATTATGACCCTATTTTT--A
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20      28041859 158 -  46401353 TAAA--------------CCAACA------------TGT-ACAAGTTCTTGATG----------TTTTGGTTTAAATTTTAA---TTTTGGTGTATCTGTGAAACAGAGAATTTAGGCTCTATTGTA-------TAAGAGGAGAAA-AATATTTTTGTAGTGTTTCA---------------GGT----------GAAGCAA-TTTTACACCATTTTGACCTTATTTTTAAA
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10390471 166 +  24341844 TAAA--------------CCAGCA------------CGC-ACAAGTTCTTGATG----------TTTTGGTTTTAATTTTAA---TTTTGGTGTGTCTGTAAAACAGAGAATTTTGGCTCTTTTGTATACTTTGTAAGAGGATAAA-AATATTTTTATAGTGTTTCA---------------GGT----------GAAGCAATTTTTGTGCCATTATGACCTTATTGTTTGA
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436          1557132 153 -   2788317 TAAA--------------CCAACA------------CTTAACAAATTCTTGATG----------CTTTAATTTTAATTAAAAAACTTTT--TGCAACTGCAAAACAGA--------TTTTTGTTTTA-------TAAGAGGAGAAAGAATACGTTGATGCTGTTTCA---------------GGT----------AAAGATGTTTTTGTACCATTATGACCTTGTT-TTAAA
i dasNov3.JH567436         C 0 C 0
s allMis1.JH736069           101270 114 -    290924 TCAA--------------TCCATA------------TAC-AAAAGTTTTTGTTT----------TTTCTCCTTTTAAAATGG----------------------------------------------------GAAGAGAAATGGGAACACTTAGGAG--GTTTGT---------------GAG----------TATATGTTTAGGGGATTATTTTAACTTTGCATTT--A
i allMis1.JH736069         I 945 N 0
e zonAlb1.KB913084          1452264 2549 +   4964275 I
e taeGut2.chr3             14009029 6010 - 112617285 I

a score=2120948.000000
s hg38.chr8_KI270814v1_alt     9932 309 +    141812 AAATCTTGTACAGATGACAGGTTCACGGTGATGCTGCAG-----TTAGTATCTGAT-----GAAAA--A----------GTTA-------TGAATC------------------A-GGTTTAGATTAGATTACTGTAAACGGAGGATTTATA-TA----TTACTGGC-TAAA------GCAAAAGTAACATCATGCTTTTCAGTTGGAAGGCTAGTAAATTCTTGTTTAGGAATAGGAAATTATTTCTTTTTCTGAAAGGCAAT-TGCAGTCTGTGAAGTTAACTTTAT-AATAATTTAGACctacactgttcagtatgacagttctcagccacatgtgact-gtgtaaatttaa--------attaattaaaatttaaa
s panTro4.chr8             54950953 309 + 143986469 AAATCTTGTACAGATGACAGGTTCACGGTGATGCTGCAG-----TTAATATCTGAT-----GAAAA--A----------GTTA-------TTAATC------------------A-GGTTTAGATTAGATTACTGTAAACGGAGGATTTATA-TA----TTACTGGC-TAAA------GCAAAAGTAACATCATGCTTTTCAGTTGGAAGGCTAGTAAATTCTTGTTTAGGAATAGGAAATTATTTCTTTTTCTGAAAGGCAAT-TGCAGTCTGTGAAGTTAACTTTAT-AATAATTTAGACctacactgttcagtatgacagttctcagccacatgggact-gtgtaaatttaa--------attaattaaaatttaaa
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58988947 309 + 153482349 AAATCTTGTACAGATGACAGGTTCACGGTGATGGTGCAG-----TTAATATCTGAT-----GAAAA--A----------GTTA-------TTAATC------------------A-GATTTAGATTAGATTACTGTAAACGGAGGATTTATA-TA----TTACTGGC-TAAA------GCAAAAGTAACATCATGCTTTTCCGTTGGAAGGCTAGTAAATTCTTCTTTAGCAATAGGAAATTATTTCTTTTTCTGAAAGGCAAT-TGCAGTCTGTGAAGTTAACTTTAT-AATAATTTAGACctacactgttcagtgtgacagctctgagccacatgtgact-gtgtaaatttag--------gttaattaaaatttaaa
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48080858 309 + 100215132 AAATCTTGTACAGATGAGAGGTTCACAGTGATGGTGCGG-----TTAATATCTGAT-----GAAAA--A----------GTTA-------TTAATC------------------A-GGTTTAGATTAGATTACTGTAAACAGAGGGTTTATA-TA----TTACTGGC-GAAA------GCAAAAGTAACATCATGCTTTTCAGTTGGAAGGCTAGTAAATTCTTGTTTAGCAATAGGAAATTATTTCTTTTTCTGAAAGGCAAT-TGCAGTCTGTGAAGTAAACCTTAT-AATAATTTAGACctacactgttcagtgtgacagctctgagccacatgtgact-gtgtaaatttaa--------attaattaaaatttaaa
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61630844 309 + 150158102 AAATCTTATACAGATGACAGGTTCACAGTGATGGTACAG-----TTAATATCTGAT-----GAAAA--A----------GTTA-------TTAATC------------------A-GGTGTAGATTAGATTACTGTAAATGGAGGATTTATA-TA----TTACTGGC-TAAA------GCAAAAGTAGCATCATGCTTTTCAGTTGGAAGGCTAGTAAATTCTTGTTTAGCGATAGGAAGTTATTTCTTTTTCTGAAAGGCAAT-TGCAGTCTGTGAAGTTAACCTTAT-AGTAATTTAGACctactctgtttagtatgacagctctgagccacatgtgact-gtgtaaatttaa--------attaattaaaatttaaa
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58303645 309 + 146850525 AAATCTTATACAGATGACAGGTTCACAGTGATGGTACAG-----TTAATATCTGAT-----GAAAA--A----------GTTA-------TTAATC------------------A-GGTGTAGATTAGATTACTGTAAATGGAGGATTTATA-TA----TTACTGGC-TAAA------GCAAAAGTAGCATCATGCTTTTCAGTTGGAAGGCTAGTAAATTCTTGTTTAGCGATAGGAAGTTATTTCTTTTTCTGAAAGGCAAT-TGCAGTCTGTGAAGTTAACCTTAT-AGTAATTTAGACctactctgtttagtatgacagctctgagccacatgtgact-gtgtaaatttaa--------attaattaaaatttaaa
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53230192 309 + 139301422 AAATCTTATACAGATGACAGGTTCACAGTGATGGTACAG-----TTAATATCTGAT-----GAAAA--A----------GTTA-------TTAATC------------------A-GGTATAGATTAGATTACTGTAAATGGAGGATTTATA-TA----TTACTGGC-TAAA------GCAAAAGTAGCATCATGCTTTTCAGTTGGAAGGCTAGTAAATTCTTGTTTAGCGATAGGAAGTTATTTCTTTTTCTGAAAGGCAAT-TGCAGTCTGTGAAGTTAACCTTAT-AGTAATTTAGACctactctgtttagtatgacagctctgagccacatgtgact-gtgtaaatttaa--------attaattaaaatttaaa
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       3416 300 +    110629 AAATCTTGTGCAGATGACAGCTTCAAAGTGATAGTACAG-----TTAGTACCTGAT-----GAAAA--A----------GTTG-------TTAATC------------------A-GGTTTAGATTAGATTACTGAAAGTGGGGGATTTACA-TA----TTACTGAC-TAAA------GCAAAAGTAAT---ATGCTTCTCAGTTGGACGGCTAGTAAATTCCTGTCTAGCAATAGGAAATTATTTCTTTTTCTGAAAGGCAAT-TGCACTCTGTGAAGTTAACTTTAT-----ATTTAGACctacactgttcattatgacagctcctaaccacatgtgact---gtaaatttaa--------gttaattaaaatttaaa
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2736316 302 +  10880647 AAATCTTGTGCA---GACAGCTTCAAAGTGATAGTACAG-----TTAGTACCTGAT-----GAAAA--A----------GTTG-------TTAATC------------------A-GGTTTAGATTAGATTAATGAAAGTGGGGGATTTATG-TA----TTACTGAT-TAAA------GCAAAAGTAATACCATGCTTTTCAGTTGGAAGGCTAGTAAATTCCTGTTTAACGATAGGAAATTATTTCTTTTTCTGAAAGGCAAT-TTCACTTTGTGAAGTTAACTTTAT-----ATTTAGACctacactattcattatgacagctcctaaccacatgtgact-gcgtaaatttaa--------gttaattaaaatttaaa
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21544730 249 -  23169006 AAATCTTGTATAGATGATAGGTTCAAAATGATAATTTAA-----TTAATATCTGAT-----GAAAA--T----------GATG----CTCTTAATCTG---TATAA-TAG--AAA-GAGACTAATTAGATTACTGAAATCAGGGGG-------------------------------------------------------------------AGTAAATTCATGTCTAGTAATAGGAAATTGTTTCTTTTTCTGAAAGGCAAT---------------------TTAT-AGTACTTTAGACctgtattgttaactacgatggccactaaccacaagtagct-gtgcgaatttaa--------attaattaaaaattgaa
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4216552 344 -   9676502 AAACCTTGTATAGATGGCTGGTTCAAAGTAAAACTGCAGTACCCTTGATATCTGAT-----AAAAACTA----------GCTGTATTTTTTTCATCTGGA-GATGG-TAGGAGAA-AAACCAGATTACGTTACTGAAAAC--AGGATTTGTG-TGCTACTTACTTGC-TAAA------GCAGAAGTAAT---ATGCCTTGGGGTTAGAAGGTTAGTTAATTCATAGCAAGAAAAAGGAAATTATTTC-TTTTCTGAAC--CAAT-AGAAATCTGTGAAGTTAACTTTCT-AGTACTTTGGATGAgtactgttcaatatggtagccactagctacatgtggttaatgttaatttaatgtaatatgttaattaaaacttaca
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907         11145923 313 +  17242564 AAATCTCATACAGATGACAGGTTCAAAGCGATACTGTCT-----TTAATATCTG-------AACAA--AGGAGCTGTATGTTT-------TGAATCTGGAAAAAGA-AGG----A-AAATCTGGTTAGATTACTGAAAACAGGTAACTTGTG-TA----TCGCTGCG-TAAA-------CAAAGGT---------CTTTTAAATCGAAAGGCTAGTAGATTCATATTTGGTCAAAGGAAATTGTTTCTTTTTCTGAAAGGCAAT-GGCAGTCCGTGAAGTTAACTTT-T-AAGGCTTCAGACC----ctgtccagtatggc-gcccttagccacatgtggcc--tgtagattgaa--------attaattgacatctaaa
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84376273 323 +  91571448 AAATCTTATACAGATGACAAGTTCAAAGTGATACTGTAT-----TTAATATCTGAT-----AAAAA--AAGAGTTGTATGTTT-------TTAAGCTGGCTGACAG-AAG----G-AAACTTAATTAGATT----AAGACAGAAGACTTCTA-GA----TTACTGCA-TAAA-------CAAAAGTAATATT---CTTCTAAAGTGGAAGATTAATAAACTCATATCTAGTCAAAGGAAATTGTTTCTTTTTCTGAAAGGCAGT-GGCAATCTGTAAAGTTAACTTTAT-AATGCTTTAGACctgcaccatccagtgtggcagccattagccacatgtgcgc-acgtaaatttaa--------a-tgactaaaatttaaa
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7114992 335 -  14545593 AAATCTTGTACAGATGACAGGTTCAAAGTAATACTGTAT-----TTAATATCTGATTAAAAAAAAA--AAGAATCGTATGTTT-------TTAATCTGGATAATAG-AAG----G-AAACCTGATTAGATTACTGAAGACAGAGGACTTATA-TA----TTACTGTA-TAAA-------CAAAAGTGATATCATGCTTTTAAATTGGAAGGTTAGTAAATTCATATTTAGTCAAAGGAAATTGTTTCTTTTCCTGAAAGGCAAT-GGCAGTCTGTGAAGTTAACTTTAT-AAGACGTTAGACctgcaccgtccagtgtggtagccattagccacatgtaccc-atgtaaatctaa--------a-ttattaaaatttaaa
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19640686 320 -  23789964 AAGTGTTGCAGAGATGACAAGTTCAAAGTGATACTGTAT-----TTAATGTCAGAC-----AAAAA--GAACTGTGTATGTTT-------TTAATCTGGACAATGG-AAG----GAAAACATAGCTAGGTCACTAACAGCAAAGGACTTGTA-TA----TTACCGTG-TGAA-------CAGAAGAAACATT-------------GGAAGGTTAGTAAATGCACATCTAGTAAAAGGAAATTGTTCCTTTTTCCGAAAGGCAATGGGCATTCCGCGAAGTCAACTTCGT-AGTTCTCCGGACctgcgctgtccagtaggatagccatttattacatgtgcct-gtgtaaacttaa--------agtaattaaagtttaaa
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20      28042017 281 -  46401353 AAATCTTATACAGATGACAGTTTCAAAGTGACACTGCAT-----TTAATATCTGAT-----AAAAA--C--ATTGGTATGTTT-------TTAATCTGAATAATGG-------------------------------------------------------ACTGCA-TAGA-----GGAAAGATTAATGTTGT-GAATTAAATTGGAAGGTTAGTAAATTCATATCTAGTAAAAGGAAATTGTTTCTTTTTCTGAAAGGCAAT-GGCTGTCTGTGAAGTTAACTTTAT-aatactttagacctgtactgtccagtatggtagccactagccacatgtggct-ttttaaat-------------ttagttacaatttaaa
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10390637 330 +  24341844 AAATCTTATACAGATAACAGTTTCAAAGTGACACTACAT-----TTAACATCTGGT-----AAAAA--T--ATTGGTATGTTT-------TTAATCTGAGTAATGGAAGG----A-AAGCCTAATTAGATCATTATAAACAGTTGACTGTG--TA----TTACCACA-TAGA-----AGAAAGAGTAATACCAT-GAATTAAATTGGAAGGTTAGTAAATTCATATCTAGTAAAAGGAAATTGTTTCTTTTTCTGAAAGGCATT-AGTTGTCTGTGAAGTTAACTTGAT-aatactttagaactgtactgtccaatatggtggccacaagccacctgtggct-gtttaaatttta--------attaattacagtttaaa
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436          1557285 326 -   2788317 AAATAATGTCCAGATGACAGGTCCAAAGGG-------AT-----TTAATACCTGCTTAA--AAAAA--G--ATTGGTATGTAT-------TTTATCTGGCCAGTGG-AAG----A-AAACCTGATTAGATTACTGAAAACAGGTGACTGTTACTG----TGACTATACCAGATCACTAGCAAAAGTGTTATCATAGTATTAAATTGGAAGGTTGAAAAATTCATATCTAGTCAAAGGAAATTGTTTCTTTTTCTGAAAGGCAAC-AGAT---------GTTAACTTTATAAATAATTTAGACCAgcactgtctaatatgatggccactggccacatgtggct-atttaaatttaa--------attaattaaaatttaaa
i dasNov3.JH567436         C 0 C 0
e zonAlb1.KB913084          1452264 2549 +   4964275 I
e taeGut2.chr3             14009029 6010 - 112617285 I

a score=27349.000000
s hg38.chr8_KI270814v1_alt    10241 5 +    141812 actca
s panTro4.chr8             54951262 5 + 143986469 actca
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58989256 5 + 153482349 actca
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48081167 5 + 100215132 actca
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61631153 5 + 150158102 actca
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58303954 5 + 146850525 actca
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53230501 5 + 139301422 actca
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       3716 5 +    110629 attaa
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2736618 5 +  10880647 attca
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21544979 5 -  23169006 ataca
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4216896 5 -   9676502 gttca
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907         11146236 5 +  17242564 gctca
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84376596 4 +  91571448 attc-
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7115327 5 -  14545593 atgca
i cerSim1.JH767782         C 0 I 9
s pteAle1.KB030580         19641006 5 -  23789964 atcca
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20      28042298 5 -  46401353 attta
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10390967 5 +  24341844 attta
i triMan1.JH594629         C 0 C 0
e zonAlb1.KB913084          1452264 2549 +   4964275 I
e taeGut2.chr3             14009029 6010 - 112617285 I
e dasNov3.JH567436          1557611 0 -   2788317 C

a score=6600.000000
s hg38.chr8_KI270814v1_alt    10246 1 +    141812 g
s panTro4.chr8             54951267 1 + 143986469 g
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58989261 1 + 153482349 g
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48081172 1 + 100215132 g
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61631158 1 + 150158102 g
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58303959 1 + 146850525 g
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53230506 1 + 139301422 g
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       3721 1 +    110629 g
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2736623 1 +  10880647 g
i saiBol1.JH378179         C 0 C 0
s speTri2.JH393342          4216901 1 -   9676502 g
i speTri2.JH393342         C 0 C 0
s pteAle1.KB030580         19641011 1 -  23789964 g
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20      28042303 1 -  46401353 g
i loxAfr3.scaffold_20      C 0 I 35
e zonAlb1.KB913084          1452264 2549 +   4964275 I
e taeGut2.chr3             14009029 6010 - 112617285 I
e dasNov3.JH567436          1557611 0 -   2788317 C
e equCab2.chr15            84376600 0 +  91571448 C
e triMan1.JH594629         10390972 0 +  24341844 C
e cerSim1.JH767782          7115332 9 -  14545593 I
e orcOrc1.KB316907         11146241 0 +  17242564 C
e otoGar3.GL873541         21544984 0 -  23169006 C

a score=4500.000000
s hg38.chr8_KI270814v1_alt    10247 1 +    141812 g
s panTro4.chr8             54951268 1 + 143986469 g
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58989262 1 + 153482349 g
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48081173 1 + 100215132 g
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61631159 1 + 150158102 g
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58303960 1 + 146850525 g
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53230507 1 + 139301422 g
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       3722 1 +    110629 g
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2736624 1 +  10880647 g
i saiBol1.JH378179         C 0 C 0
s speTri2.JH393342          4216902 1 -   9676502 g
i speTri2.JH393342         C 0 C 0
e zonAlb1.KB913084          1452264 2549 +   4964275 I
e taeGut2.chr3             14009029 6010 - 112617285 I
e dasNov3.JH567436          1557611 0 -   2788317 C
e equCab2.chr15            84376600 0 +  91571448 C
e triMan1.JH594629         10390972 0 +  24341844 C
e loxAfr3.scaffold_20      28042304 35 -  46401353 I
e pteAle1.KB030580         19641012 0 -  23789964 C
e cerSim1.JH767782          7115332 9 -  14545593 I
e orcOrc1.KB316907         11146241 0 +  17242564 C
e otoGar3.GL873541         21544984 0 -  23169006 C

a score=197616.000000
s hg38.chr8_KI270814v1_alt    10248 79 +    141812 ctgggcacagtggctcatacctgtaatcctagcactttgggaggccaaggcgggaggatcacttgagccc-aggagtttg
s panTro4.chr8             54951269 79 + 143986469 ccgggcacagtggctcatacctgtaatcctagcactttgggaggccaaggcgggaggatcacttgagccc-aggagtttg
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58989263 79 + 153482349 ccgggcacagtggctcatacctgtaatcctagcactttgggaggccaaggcgggaggatcacttgagccc-aggagtttg
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48081174 79 + 100215132 ccgggcacagtggctcatacctgtaatcctagcactttgggaggctgaggcgggaggatcacttgagccc-aggagtttg
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61631160 79 + 150158102 ctgggcacagtagctcatatctgtaatcctagcactttgggaggccgaggcaggaggatcacttgagccc-aggagtttg
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58303961 79 + 146850525 ctgggcacagtagctcatatctgtaatcctagcactttgggaggccgaggcaggaggatcacttgagccc-aggagtttg
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53230508 52 + 139301422 ctgggcacagtggctcatacctgtaatcttagcactttgggaggccgaggca----------------------------
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       3723 80 +    110629 ccgggcacagtggctcatacttgtaatcctagcactttgggaggctgagatgggaggatcacttgagccccaggagtttg
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2736625 80 +  10880647 tcgggcacagtggctcatacttgtaatcctagcactttgggaggccgaggtgggaggatcacttgagccctaggagtttg
i saiBol1.JH378179         C 0 C 0
s equCab2.chr15            84376600  5 +  91571448 ---------------------------------------------------------------------------gtttg
i equCab2.chr15            C 0 C 0
e zonAlb1.KB913084          1452264 2549 +   4964275 I
e taeGut2.chr3             14009029 6010 - 112617285 I
e dasNov3.JH567436          1557611  0 -   2788317 C
e speTri2.JH393342          4216903  0 -   9676502 C
e triMan1.JH594629         10390972  0 +  24341844 C
e loxAfr3.scaffold_20      28042304 35 -  46401353 I
e pteAle1.KB030580         19641012  0 -  23789964 C
e cerSim1.JH767782          7115332  9 -  14545593 I
e orcOrc1.KB316907         11146241  0 +  17242564 C
e otoGar3.GL873541         21544984  0 -  23169006 C

a score=67677.000000
s hg38.chr8_KI270814v1_alt    10327 28 +    141812 agaccaacctgggcaacatagtgagacc
s panTro4.chr8             54951348 28 + 143986469 agaccaacctgggcaacatagtgagacc
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58989342 28 + 153482349 agaccaacctgggcaacatagtgagacc
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48081253 28 + 100215132 agaccaacctgggtaacatagtgagacc
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61631239 28 + 150158102 agaccaacctgggcaacatagtgaaacc
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58304040 28 + 146850525 agaccaacctgggcaacatagtgaaacc
i macFas5.chr8             C 0 C 0
s calJac3.chrUn_GL286234       3803 28 +    110629 agaccagcctgggcaaaatagtgagacc
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2736705 28 +  10880647 agaccagcctaggcaaaatagtgagacc
i saiBol1.JH378179         C 0 C 0
e zonAlb1.KB913084          1452264 2549 +   4964275 I
e taeGut2.chr3             14009029 6010 - 112617285 I
e dasNov3.JH567436          1557611  0 -   2788317 C
e equCab2.chr15            84376605  0 +  91571448 C
e speTri2.JH393342          4216903  0 -   9676502 C
e triMan1.JH594629         10390972  0 +  24341844 C
e loxAfr3.scaffold_20      28042304 35 -  46401353 I
e pteAle1.KB030580         19641012  0 -  23789964 C
e cerSim1.JH767782          7115332  9 -  14545593 I
e orcOrc1.KB316907         11146241  0 +  17242564 C
e otoGar3.GL873541         21544984  0 -  23169006 C
e chlSab2.chr8             53230560  0 + 139301422 C

a score=11909.000000
s hg38.chr8_KI270814v1_alt    10355 4 +    141812 tcgt
s panTro4.chr8             54951376 4 + 143986469 tcgt
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58989370 4 + 153482349 ttgt
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48081281 4 + 100215132 tcgt
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61631267 4 + 150158102 tcgt
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58304068 4 + 146850525 tcgt
i macFas5.chr8             C 0 C 0
s calJac3.chrUn_GL286234       3831 4 +    110629 ttgt
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2736733 4 +  10880647 tcgt
i saiBol1.JH378179         C 0 C 0
s pteAle1.KB030580         19641012 4 -  23789964 tcgt
i pteAle1.KB030580         C 0 C 0
e zonAlb1.KB913084          1452264 2549 +   4964275 I
e taeGut2.chr3             14009029 6010 - 112617285 I
e dasNov3.JH567436          1557611 0 -   2788317 C
e equCab2.chr15            84376605 0 +  91571448 C
e speTri2.JH393342          4216903 0 -   9676502 C
e triMan1.JH594629         10390972 0 +  24341844 C
e loxAfr3.scaffold_20      28042304 35 -  46401353 I
e cerSim1.JH767782          7115332 9 -  14545593 I
e orcOrc1.KB316907         11146241 0 +  17242564 C
e otoGar3.GL873541         21544984 0 -  23169006 C
e chlSab2.chr8             53230560 0 + 139301422 C

a score=308212.000000
s hg38.chr8_KI270814v1_alt    10359 119 +    141812 ctctac---aagga----aatcaaaaagtgaggt-gggaggatcccttgatccctggaggtcgaggctgcagtgagctgtcatcatgccgctgcactcccacctgggcaacaggagtgaggccctgt
s panTro4.chr8             54951380 119 + 143986469 ctctac---aagaa----aatcaaaaagtgaggt-gggaggatcccttgatccctggaggtcgaggctgcagtgagctgtcatcatgccgctgcactcccacctgggcaacaggagtgaggccctgt
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58989374 120 + 153482349 ctctac---aagaa----aatccaaaagtgaggtggggaggatcccttgatccctggaggtcgaggctgcagtgagctgtcatcatgccgctgcactcccacctgggcaacaggagtgaggccctgt
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48081285 119 + 100215132 ctctac---aagaa----aatcaaaaggtgaggt-gggaggatcccttgatccctggaggtcgaggctgcagtgagttgtcatcatgccgctgcactcccacctgggcaacaggagtgaggccctgt
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61631271 119 + 150158102 ctctgc---aagaa----aataaaaaagtgaggt-gggaggatcccttgatccctggaggttgaggctatagtgagctgtcatcatgccactgcactcccacctgggcaacaggattgaggtcctgt
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58304072 119 + 146850525 ctctgc---aagaa----aataaaaaagtgaggt-gggaggatcccttgatccctggaggttgaggctatagtgagctgtcatcatgccactgcactcccacctgggcaacaggattgaggtcctgt
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53230560  91 + 139301422 ------------------------------------ggaggatcccttgattcctggaggtcgaggctgtagtgagctgtcatcatgccactgcactgccacccaggcaacaggactgaggtcctgt
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       3835 123 +    110629 ctctac---aaaaaacataataaaaatgtgaggt-gggaggatccctagatccctggaggttgaggttgcagtgagctgtcatcatgccagtgtatacccagctgggcaacaggagtgaggccctgt
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2736737 126 +  10880647 ttctacaaaaaaaaaaataataaaaatgtcaggt-gggaggatccctagatccctggaggtcgaggttgtagtgagctgtcatcatgccagtgcatacccagctgggcaacaggagtaaggccctgt
i saiBol1.JH378179         C 0 C 0
e zonAlb1.KB913084          1452264 2549 +   4964275 I
e taeGut2.chr3             14009029 6010 - 112617285 I
e dasNov3.JH567436          1557611   0 -   2788317 C
e equCab2.chr15            84376605   0 +  91571448 C
e speTri2.JH393342          4216903   0 -   9676502 C
e triMan1.JH594629         10390972   0 +  24341844 C
e loxAfr3.scaffold_20      28042304  35 -  46401353 I
e pteAle1.KB030580         19641016   0 -  23789964 C
e cerSim1.JH767782          7115332   9 -  14545593 I
e orcOrc1.KB316907         11146241   0 +  17242564 C
e otoGar3.GL873541         21544984   0 -  23169006 C

a score=35702.000000
s hg38.chr8_KI270814v1_alt    10478 18 +    141812 ctc-----aaaaaaaaaaaatcg
s panTro4.chr8             54951499 18 + 143986469 ctc-----aaaaaaaaaaaatcg
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58989494 18 + 153482349 ctc-----aaaaaaaaaaaatcg
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48081404 23 + 100215132 ctcaaaaaaaaaaaaaaaaatca
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61631390 16 + 150158102 ctc-------aaaaaaaaaatcg
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58304191 16 + 146850525 ctc-------aaaaaaaaaatcg
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53230651 16 + 139301422 ctc-------aaaaaaaaaatcg
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       3958 21 +    110629 ctc--aaaaaaaaaaaaaaatcg
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2736863 23 +  10880647 ctcaaaaaaaaaaaaaaaaatcg
i saiBol1.JH378179         C 0 C 0
s dasNov3.JH567436          1557611  6 -   2788317 ttc-------aaa----------
i dasNov3.JH567436         C 0 C 0
e zonAlb1.KB913084          1452264 2549 +   4964275 I
e taeGut2.chr3             14009029 6010 - 112617285 I
e equCab2.chr15            84376605  0 +  91571448 C
e speTri2.JH393342          4216903  0 -   9676502 C
e triMan1.JH594629         10390972  0 +  24341844 C
e loxAfr3.scaffold_20      28042304 35 -  46401353 I
e pteAle1.KB030580         19641016  0 -  23789964 C
e cerSim1.JH767782          7115332  9 -  14545593 I
e orcOrc1.KB316907         11146241  0 +  17242564 C
e otoGar3.GL873541         21544984  0 -  23169006 C

a score=10505.000000
s hg38.chr8_KI270814v1_alt    10496 2 +    141812 gt
s panTro4.chr8             54951517 2 + 143986469 gt
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58989512 2 + 153482349 gt
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48081427 2 + 100215132 gt
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61631406 2 + 150158102 gt
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58304207 2 + 146850525 gt
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53230667 2 + 139301422 gt
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       3979 2 +    110629 gt
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2736886 2 +  10880647 gt
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21544984 2 -  23169006 gt
i otoGar3.GL873541         C 0 C 0
s orcOrc1.KB316907         11146241 2 +  17242564 gt
i orcOrc1.KB316907         C 0 C 0
e zonAlb1.KB913084          1452264 2549 +   4964275 I
e taeGut2.chr3             14009029 6010 - 112617285 I
e dasNov3.JH567436          1557617 0 -   2788317 C
e equCab2.chr15            84376605 0 +  91571448 C
e speTri2.JH393342          4216903 0 -   9676502 C
e triMan1.JH594629         10390972 0 +  24341844 C
e loxAfr3.scaffold_20      28042304 35 -  46401353 I
e pteAle1.KB030580         19641016 0 -  23789964 C
e cerSim1.JH767782          7115332 9 -  14545593 I

a score=8250.000000
s hg38.chr8_KI270814v1_alt    10498 2 +    141812 tt
s panTro4.chr8             54951519 2 + 143986469 tt
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58989514 2 + 153482349 tt
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48081429 2 + 100215132 tt
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61631408 2 + 150158102 tt
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58304209 2 + 146850525 tt
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53230669 2 + 139301422 tt
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       3981 2 +    110629 tt
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2736888 2 +  10880647 tt
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21544986 2 -  23169006 tc
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4216903 2 -   9676502 tc
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907         11146243 1 +  17242564 -t
i orcOrc1.KB316907         C 0 I 1
e zonAlb1.KB913084          1452264 2549 +   4964275 I
e taeGut2.chr3             14009029 6010 - 112617285 I
e dasNov3.JH567436          1557617 0 -   2788317 C
e equCab2.chr15            84376605 0 +  91571448 C
e triMan1.JH594629         10390972 0 +  24341844 C
e loxAfr3.scaffold_20      28042304 35 -  46401353 I
e pteAle1.KB030580         19641016 0 -  23789964 C
e cerSim1.JH767782          7115332 9 -  14545593 I

a score=3843.000000
s hg38.chr8_KI270814v1_alt    10500 1 +    141812 c
s panTro4.chr8             54951521 1 + 143986469 c
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58989516 1 + 153482349 c
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48081431 1 + 100215132 c
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61631410 1 + 150158102 c
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58304211 1 + 146850525 c
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53230671 1 + 139301422 c
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       3983 1 +    110629 c
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2736890 1 +  10880647 c
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21544988 1 -  23169006 t
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4216905 1 -   9676502 c
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907         11146245 1 +  17242564 t
i orcOrc1.KB316907         I 1 C 0
s equCab2.chr15            84376605 1 +  91571448 t
i equCab2.chr15            C 0 C 0
e zonAlb1.KB913084          1452264 2549 +   4964275 I
e taeGut2.chr3             14009029 6010 - 112617285 I
e dasNov3.JH567436          1557617 0 -   2788317 C
e triMan1.JH594629         10390972 0 +  24341844 C
e loxAfr3.scaffold_20      28042304 35 -  46401353 I
e pteAle1.KB030580         19641016 0 -  23789964 C
e cerSim1.JH767782          7115332 9 -  14545593 I

a score=27435.000000
s hg38.chr8_KI270814v1_alt    10501 4 +    141812 ttag
s panTro4.chr8             54951522 4 + 143986469 ttag
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58989517 4 + 153482349 ttag
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48081432 4 + 100215132 ttag
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61631411 4 + 150158102 ttag
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58304212 4 + 146850525 ttag
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53230672 4 + 139301422 ttag
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       3984 4 +    110629 ttag
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2736891 4 +  10880647 ttag
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21544989 4 -  23169006 ttag
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4216906 4 -   9676502 ttag
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907         11146246 4 +  17242564 ccag
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84376606 4 +  91571448 tcat
i equCab2.chr15            C 0 C 0
s pteAle1.KB030580         19641016 4 -  23789964 tcag
i pteAle1.KB030580         C 0 C 0
s dasNov3.JH567436          1557617 4 -   2788317 tcaa
i dasNov3.JH567436         C 0 C 0
e zonAlb1.KB913084          1452264 2549 +   4964275 I
e taeGut2.chr3             14009029 6010 - 112617285 I
e triMan1.JH594629         10390972 0 +  24341844 C
e loxAfr3.scaffold_20      28042304 35 -  46401353 I
e cerSim1.JH767782          7115332 9 -  14545593 I

a score=868395.000000
s hg38.chr8_KI270814v1_alt    10505 144 +    141812 tcacaccagccacatttcaggtgctcactggccacatgtggctagcagctac---attggtcagtgcaaatagagaacacttctgtcattgcggaaaacgatattgga---tagtgccgCTCTAGAGACTTACAGTTGTATAAAAT--------TAA--------------T
s panTro4.chr8             54951526 144 + 143986469 tcacaccagccacatttcaggtgctcactggccacatgtggctagcagctac---attggtcagtgcaaatagagaacacttctgtcattgcggaaaacgatattgga---tagtgctgCTCTAGAGACTTACAGTTGTATAAAAT--------TAA--------------T
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58989521 144 + 153482349 tcacaccagccacatttcaggtgctcactggccacatgtggctagcagctac---attggtcagtgcaaatagaaaacacttctgtcattgcagaaaacgatattgga---tagcgctgCTCTAGAGACTTACAGTTGTATAAAAT--------TAA--------------T
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48081436 144 + 100215132 tcacaccagccacatttcaggtgctcactggccacacgtggctagcagctac---attggacagtgcaaatagagaacacttctgttattgcggaaaacgatattgga---tagtgctgCTCTAGAGACTTACGGTTGTTTAAAAT--------TAA--------------T
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61631415 144 + 150158102 tcacaccagccacatttcaggtgctcactggccacatgtggctagcagctac---attggacagtgcaaatacagaacacttctgtcattgcagaaaatgatattgga---tagtgctgCTCTAGTAACTTATGGTTGTATAAAAT--------TAA--------------T
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58304216 144 + 146850525 tcacaccagccacatttcaggtgctcactggccacatgtggctagcagctac---attggacagtgcaaatacagaacacttctgtcattgcagaaaatgatattgga---tagtgctgCTGTAGTAACTTATGGTTGTATAAAAT--------TAA--------------T
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53230676 144 + 139301422 tcacaccagccacatttcaggtgctcactggccacatgtggctagcagctac---attggacagtgcaaatagagaacacttctgtcattgcagaaaatgatattgga---tagtgctgCTCTAGTAACTTATGGTTGTATAAAAT--------TAA--------------T
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       3988 144 +    110629 tcacaccagccacgtttcaggtgctcactagccacatgtggctagcagctac---attggacagtgtcaatagagaacacttctgtcgctgcagaaaatgatactgga---tggtgctgCTCTAGAGACATACCATTATATAAAAT--------TAA--------------T
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2736895 144 +  10880647 tcacaccaaccacatttcaggtgctcagtagccacatgtggctagcagctac---attggacagtgtcaatagaaaacactttcgtcactgcagaaaatgatactgga---tggtgctgCTCTAGAGACATACCGTTGTATGAAAT--------TAA--------------T
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21544993 137 -  23169006 ttacactagctacatttcaagtgttcagta-------------agtgactac---attggacattgcagatagagaacatttctaacattgtaggaaattttattagatactagtgctgTTTCAGAGACATACAGTTGTCTCAAAT-----TAGTAA--------------T
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4216910 145 -   9676502 ttacactagtcccatttcagttgttatacagccacatgtgactaac-----------------------atagagaacttttctgttatt-cagaaaattctattgga---tagtgctgCTTTAGAGACAAATAGTTGGGTAAAATCTTTATGGTAAGACAGATAGTTGTGT
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907         11146250 150 +  17242564 ccacactggccacatggcacgtgctcgatagccacaggtggctggtggctactgtactgggcagtgcagacagagaagatttctgtggtcatagaaaattctgttgga---aggtgcAGCCTTAGAGACACATAGTTGGATACAGT-----TGATTT--------------T
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84376610 150 +  91571448 tcgctctagccgcatttcaagtgctaagtggccacaggtggctagtggctactgtactggacagtgcagatggagaacacttctgtcctcgcagaaagttctcttgga---tagtgTAGCTTTAGAGACATAGAGTTGTATAAAAT-----TACTTA--------------C
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7115341 149 -  14545593 tcacactagccacgtttcaagtgcttggtag-cacaggtggctaatggctactgtactggaaggtgcagatggacaacgttgctgtcatctcagaaagttctgttgga---tagtgTAGCTTGAGAGACACAGAGTTGTATAAAAT-----TCGTTA--------------T
i cerSim1.JH767782         I 9 C 0
s pteAle1.KB030580         19641020 131 -  23789964 tcacac-ggccagatttccggggctcagcagccaccagtgggtattggctactgcatcgga-----cagagagggaacattcctgtcatctcag-----------GGA---CCACGCAGCGTTAGGGACTTAGAGTTG--TAAACG-----CTGTCG--------------C
i pteAle1.KB030580         C 0 C 0
s dasNov3.JH567436          1557621 150 -   2788317 tcaaactagacacatttcatgtgcttagtagccacatgtggctagtgagtactgtattggccagcatagacaggggacatttctttcatcacagaacgttctattgga---taatggtgCTTTAGAGATATGCAGTTTTACAAAAT-----TAGTAA--------------T
i dasNov3.JH567436         C 0 C 0
e zonAlb1.KB913084          1452264 2549 +   4964275 I
e taeGut2.chr3             14009029 6010 - 112617285 I
e triMan1.JH594629         10390972   0 +  24341844 C
e loxAfr3.scaffold_20      28042304  35 -  46401353 I

a score=199225.000000
s hg38.chr8_KI270814v1_alt    10649 23 +    141812 GTTACTCTTTTACAGTAAGTATT
s panTro4.chr8             54951670 23 + 143986469 GTTACTCTTTTACAGTAAGTATT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58989665 23 + 153482349 GTTACTCTTTTACAGTAAGTATC
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48081580 23 + 100215132 GTTACTCTTTTACAGTAAGTATT
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61631559 23 + 150158102 GTTACTCTTTTACAGTAAGTATT
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58304360 23 + 146850525 GTTACTCTTTTACAGTAAGTATT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53230820 23 + 139301422 GTTACTCTTTTACAGTAAGTATT
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       4132 23 +    110629 ACTACTCTTTTACAGTAAGTATT
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2737039 23 +  10880647 ACTACTCTTTTACAGTAAGTATT
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21545130 23 -  23169006 GTTACTTCTTTGCAGTAAGTATT
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4217055 22 -   9676502 GTTTTTTCTTTAT-GTAAGTTTT
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907         11146400 23 +  17242564 GTTGCTCTTTTACAGTAAGTGAT
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84376760 23 +  91571448 GTTACTCTTTTATAGTAAGTGTT
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7115490 23 -  14545593 GTTACTCTTTTATAGTAAGTGTT
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19641151 23 -  23789964 GTTACGCTTTTACAGTTAGTGTT
i pteAle1.KB030580         C 0 C 0
s triMan1.JH594629         10390972 23 +  24341844 gttcttcagtcacactagctacT
i triMan1.JH594629         C 0 I 13
s dasNov3.JH567436          1557771 23 -   2788317 CTTATTCTTTCACAGTAAGTTTT
i dasNov3.JH567436         C 0 C 0
e zonAlb1.KB913084          1452264 2549 +   4964275 I
e taeGut2.chr3             14009029 6010 - 112617285 I
e loxAfr3.scaffold_20      28042304 35 -  46401353 I

a score=458544.000000
s hg38.chr8_KI270814v1_alt    10672  68 +    141812 CAGGG--AGAAAATGCTACTTGT---------------------------------------------TTATATGCTGCTGATATTTAGAATAGAATCTCCGTGTTGGGATTTGA--
s panTro4.chr8             54951693  68 + 143986469 CAGGG--AGAAAATGCTACTTGT---------------------------------------------TTATATGCTGCTGATATTTAGAATAGAATCTCCGTGTTGGGATTTGA--
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58989688  68 + 153482349 CAGGG--AGAAAATGCTACTTGT---------------------------------------------TTATATGCTGCTGATATTTAGAATAGAATCTCTGTGTTGGAATTTGA--
i ponAbe2.chr8             C 0 M 370
s nomLeu3.chr16            48081603  68 + 100215132 CAGGG--AGAAAATGCTACTTGT---------------------------------------------TTATATGCTGCTGATTTTTAGAATAGAATCTCCGTGTTGGAATTTGA--
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61631582  68 + 150158102 CAGGG--AGAAAATGCTACTTGT---------------------------------------------TTATATGCTGCTGATATTTAGAATGGAATCTCCGTGTTGGAATTTGA--
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58304383  68 + 146850525 CAGGG--AGAAAATGCTACTTGT---------------------------------------------TTATATGCTGCTGATATTTAGAATGGAATCTCCGTGTTGGAATTTGA--
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53230843  68 + 139301422 CAGGG--AGAAAATGCTACTTGT---------------------------------------------TTGTATGCTGCTGATATTTAGAATGGAATCTCCGTGTTGGAATTTGA--
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       4155  68 +    110629 CAGGG--AAAAAATGCTACTTGT---------------------------------------------TGATGTGCTGCTGATATTTAGAATAGAGTATTAGTGATGGAATTTGA--
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2737062  70 +  10880647 CAGGGAAAAAAAATGCTACTTTT---------------------------------------------TGATGTGCTGCTGATATTTAGAATAGAGTATTCGTGATGGAATTTGA--
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21545153  63 -  23169006 CAGGG--GGAAAGTACTACTCGT---------------------------------------------GTATATGCTGCTGATATTTAGAATAGAATTTCAGTGTTGGGA-------
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4217077  68 -   9676502 CGGAG--AGAAAATGATAGTTGT---------------------------------------------GTATATGTAACTGACATTTAGAACAGAATTCAGGTGTTGGAATCTGA--
i speTri2.JH393342         C 0 I 2
s orcOrc1.KB316907         11146423  49 +  17242564 CAGGA--GGAAAGTGCTACTTGC---------------------------------------------ATGTATGTTGCCCGTGTTTAGAAT------------------TT-GA--
i orcOrc1.KB316907         C 0 I 2
s equCab2.chr15            84376783  67 +  91571448 CAGGA--GGAAAGTGCTGCTTGC---------------------------------------------ATATGTGCTGCTGATATTTAAGATAGGATTTCACTGTTGGAATC-GA--
i equCab2.chr15            C 0 I 2
s cerSim1.JH767782          7115513  69 -  14545593 CAAGA--GGAAAGTGCTGCCTGCAT-------------------------------------------ATATATGCCGCTGATATTTAAAATAGGATATCAGTGTTGGAATT-GA--
i cerSim1.JH767782         C 0 I 2
s pteAle1.KB030580         19641174 113 -  23789964 CGGGA--GGCAAGTGCTGCCTGCGTACGTGCTGCCTGCGTACGTGCTGCCTGCATACGTGCTACCTGCATACGTGCTGCTGCTGTTTAGAGCAGGGTGTCGCTGCCCAGATTGGA--
i pteAle1.KB030580         C 0 I 2
s loxAfr3.scaffold_20      28042339  67 -  46401353 --CAG--AGAGAACATTTCTGTC---------------------------------------------AT-TATGCTGGTGATATTTAGAATAGGATTTCATTGTTGAAATTTGGCA
i loxAfr3.scaffold_20      I 35 C 0
s triMan1.JH594629         10391008  67 +  24341844 --CAG--AGAGAACATTTCTGTT---------------------------------------------GT-TATACTGGTGATATTTAGAATAGGATTTCATTGTTGAAATTTGACG
i triMan1.JH594629         I 13 C 0
s dasNov3.JH567436          1557794  64 -   2788317 CATGA--AGAAATTGTTGCTTGC---------------------------------------------ATATATGCTGCTGATATTTACAATAGAATTTCAGTG------TTTGACA
i dasNov3.JH567436         C 0 C 0
e zonAlb1.KB913084          1452264 2549 +   4964275 I
e taeGut2.chr3             14009029 6010 - 112617285 I

a score=319744.000000
s hg38.chr8_KI270814v1_alt    10740 73 +    141812 CTGTTGATG----GAACAGATTAGGGTAGGTA-AGA-TTTGCCATATGGATGAA-TTGCTTG-TGTTAGCAATA--AATAGCA
s panTro4.chr8             54951761 73 + 143986469 CTGTTGATG----GAACAGATTAGGGTAGGTA-AGA-TTTGCCATATGGATGAA-TTGCTTG-TGTTAGCAATA--AATAGCA
i panTro4.chr8             C 0 C 0
s nomLeu3.chr16            48081671 73 + 100215132 CTGTTGATG----GAACAGATTAGGGTAGGTA-AGA-TTTCCCATATGGATGAA-TTGCTTG-TGTTAGCAATA--AATAGCA
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61631650 73 + 150158102 CTGTTGATG----GAACAGATTAGGGTAGGTA-AGA-TTTGCCATATGGATGAA-TTGCTTG-TGTTGGCAATA--AATAGCA
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58304451 73 + 146850525 CTGTTGATG----GAACAGATTAGGGTAGGTA-AGA-TTTGCCATATGGATGAA-TTGCTTG-TGTTGGCAATA--AATAGCA
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53230911 73 + 139301422 CTGTTGATG----GAACAGATTAGGGTAGGTA-AGA-TTTGCCATATGGATGAA-TTGCTTG-TGTTGGCAATA--AATAGCA
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       4223 74 +    110629 CTATTGATG----GAGCAGATTAGGGTGGGTA-AGA-ATTGCCATATGGATGAATTTGCTTG-TGTTGGCAATA--AATAGCA
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2737132 73 +  10880647 GTATTGATG----GAGCAGATTAAGGTGGGTA-AGA-ATTGCCAGATGGATGAA-TTGCTTG-TGTTGGCAATA--AATAGCA
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21545216 68 -  23169006 -TATTAATG----GAGCAGATTGGGGAAGGCA-GGG-TTTGCCACATACG-----TTGCTGT-TGTTGGCAGTA--AACACCA
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4217147 68 -   9676502 CTGCTGATG----GAACAGATTAGAATGAGTT-GGGTTTTGCCATCTGAA-----TTGTTAT-TA--GGAAACA--AATAGCA
i speTri2.JH393342         I 2 C 0
s orcOrc1.KB316907         11146474 68 +  17242564 CCATCCACG----GAGCAGGCTATTATAAATG--GG-TTTGCCATGTTAG-----TTGCTAG-TGTTGGCAATA--AGGAGTA
i orcOrc1.KB316907         I 2 C 0
s equCab2.chr15            84376852 66 +  91571448 CTGTTGAT-----GGGCACATTAGGCTAAATAAGGG-TTTGCCTTATGAG-----TTGCTAG-TGTTCGCAATA--AAG---A
i equCab2.chr15            I 2 C 0
s cerSim1.JH767782          7115584 66 -  14545593 CTATTGGT-----AAGCATATTAGGCTAGATAAGGG-TTTGCCTTATTTG-----TTGCTAC-TGTTGGCAGTA--AAG---A
i cerSim1.JH767782         I 2 C 0
s pteAle1.KB030580         19641289 61 -  23789964 CTGTGGAT-----GAGCGTGTTGGGGCAGACA---G-CTTGCCGTGTTGG-----TGGTTAG-----GGCAGTGGCAGG---A
i pteAle1.KB030580         I 2 C 0
s loxAfr3.scaffold_20      28042406 64 -  46401353 CTATCATTG----GAGCAGATTAGGGTA---T-----TTGGTCGTATGAA-----CTGTTAAGTGTTTGCAGTa--aatacca
i loxAfr3.scaffold_20      C 0 I 235
s triMan1.JH594629         10391075 70 +  24341844 CTGTTGATGGATCGAACAGATTAGGGTAAGTC-----TTTGTCATATGAA-----TTGTTAC-TGTTTGCAGTA--AATatca
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436          1557858 51 -   2788317 CTATCAGTG----AAGCAGATTA--------------------ACATGAA-----TTGTTAG-TGTTGCCAATA--AATAGGA
i dasNov3.JH567436         C 0 I 1
e zonAlb1.KB913084          1452264 2549 +   4964275 I
e taeGut2.chr3             14009029 6010 - 112617285 I
e ponAbe2.chr8             58989756 370 + 153482349 M

a score=6864.000000
s hg38.chr8_KI270814v1_alt    10813 1 +    141812 G
s panTro4.chr8             54951834 1 + 143986469 G
i panTro4.chr8             C 0 C 0
s nomLeu3.chr16            48081744 1 + 100215132 G
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61631723 1 + 150158102 G
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58304524 1 + 146850525 G
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53230984 1 + 139301422 G
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       4297 1 +    110629 G
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2737205 1 +  10880647 G
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21545284 1 -  23169006 G
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4217215 1 -   9676502 G
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907         11146542 1 +  17242564 G
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84376918 1 +  91571448 A
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7115650 1 -  14545593 A
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19641350 1 -  23789964 G
i pteAle1.KB030580         C 0 C 0
s triMan1.JH594629         10391145 1 +  24341844 a
i triMan1.JH594629         C 0 I 226
s dasNov3.JH567436          1557910 1 -   2788317 G
i dasNov3.JH567436         I 1 C 0
e zonAlb1.KB913084          1452264 2549 +   4964275 I
e taeGut2.chr3             14009029 6010 - 112617285 I
e loxAfr3.scaffold_20      28042470 235 -  46401353 I
e ponAbe2.chr8             58989756 370 + 153482349 M

a score=149815.000000
s hg38.chr8_KI270814v1_alt    10814 29 +    141812 GTGGATAATTAATTTGAAAAGTGTATATt-
s panTro4.chr8             54951835 29 + 143986469 GTGGATAATTAATTTGAAAAGTGTATATt-
i panTro4.chr8             C 0 C 0
s nomLeu3.chr16            48081745 26 + 100215132 GTGGATAATTAATTTGAAAAGTGTAT----
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61631724 28 + 150158102 GTGGATAATTTTTTGGAAAAGTGTATAt--
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58304525 28 + 146850525 GTGGATAATTTTTTGGAAAAGTGTATAt--
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53230985 28 + 139301422 GTGGATAATTTTTTGGAAAAGTGTATAt--
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       4298 28 +    110629 GTGGATAATTAATTTGAAAAGTGTGTAt--
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2737206 28 +  10880647 GTGGATAATTAATTTGAAAAGTATGTAT--
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21545285 28 -  23169006 GTGGATAAGTGATTTGAAAAGTGTGTAT--
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4217216 28 -   9676502 GGGAATAATTAACTGGAAAAATGTGTGT--
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907         11146543 28 +  17242564 GTGAGTAATTAAGTTAGAAAGTGTGTAT--
i orcOrc1.KB316907         C 0 I 1
s equCab2.chr15            84376919 28 +  91571448 GTGGGTGATTAATTTGAAAAGTGTTTTT--
i equCab2.chr15            C 0 I 1
s cerSim1.JH767782          7115651 28 -  14545593 GTGGGTAGTTAATTTGAAAAGTGTATAT--
i cerSim1.JH767782         C 0 I 1
s pteAle1.KB030580         19641351 26 -  23789964 GTGGGC--TTGAACTTGGAAGCGTGTGT--
i pteAle1.KB030580         C 0 I 1
s dasNov3.JH567436          1557911 29 -   2788317 GGGGATAATTAATTTCAAAAGTGTGTAT-T
i dasNov3.JH567436         C 0 C 0
e zonAlb1.KB913084          1452264 2549 +   4964275 I
e taeGut2.chr3             14009029 6010 - 112617285 I
e triMan1.JH594629         10391146 226 +  24341844 I
e loxAfr3.scaffold_20      28042470 235 -  46401353 I
e ponAbe2.chr8             58989756 370 + 153482349 M

a score=-19046.000000
s hg38.chr8_KI270814v1_alt    10843 27 +    141812 ttatttatttatttatttattta------------ttta-------
s panTro4.chr8             54951864 27 + 143986469 ttatttatttatttatttattta------------ttta-------
i panTro4.chr8             C 0 C 0
s nomLeu3.chr16            48081771 16 + 100215132 -----------tttatttattta------------ttta-------
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61631752 16 + 150158102 -----------tttatttgttta------------ttta-------
i rheMac3.chr8             C 0 I 1
s macFas5.chr8             58304553 16 + 146850525 -----------tttatttgttta------------ttta-------
i macFas5.chr8             C 0 I 1
s chlSab2.chr8             53231013 16 + 139301422 -----------tttatttattta------------ttta-------
i chlSab2.chr8             C 0 I 3
s calJac3.chrUn_GL286234       4326 11 +    110629 -----------tttatttat---------------tt---------
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2737234 14 +  10880647 -----------TTTAtttgttta------------tt---------
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21545313 16 -  23169006 -----------CTTGTTCTTATT------------TTTA-------
i otoGar3.GL873541         C 0 I 8
s speTri2.JH393342          4217244 28 -   9676502 -----------TTTGATATTTTAAGGTCTCTTCTGTTTC-------
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907         11146572 10 +  17242564 ---------------TTAATCTC------------TT---------
i orcOrc1.KB316907         I 1 C 0
s cerSim1.JH767782          7115680 12 -  14545593 ---------------TTAATCTC------------TTGT-------
i cerSim1.JH767782         I 1 I 17
s pteAle1.KB030580         19641378 12 -  23789964 ---------------TTGGCCTT------------CAGT-------
i pteAle1.KB030580         I 1 I 15
s dasNov3.JH567436          1557940 27 -   2788317 -------GTGATCTTTTTTTAGC------------TTCAGAACTTC
i dasNov3.JH567436         C 0 C 0
e zonAlb1.KB913084          1452264 2549 +   4964275 I
e taeGut2.chr3             14009029 6010 - 112617285 I
e equCab2.chr15            84376947  1 +  91571448 I
e triMan1.JH594629         10391146 226 +  24341844 I
e loxAfr3.scaffold_20      28042470 235 -  46401353 I
e ponAbe2.chr8             58989756 370 + 153482349 M

a score=-12401.000000
s hg38.chr8_KI270814v1_alt    10870 9 +    141812 ttta--tttat----
s panTro4.chr8             54951891 9 + 143986469 ttta--tttat----
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58990127 9 + 153482349 ttta--tttat----
i ponAbe2.chr8             M 370 C 0
s nomLeu3.chr16            48081787 9 + 100215132 ttta--tttat----
i nomLeu3.chr16            C 0 C 0
s calJac3.chrUn_GL286234       4337 1 +    110629 ----------t----
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2737248 1 +  10880647 ----------t----
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21545337 9 -  23169006 TCTA--TTTTA----
i otoGar3.GL873541         I 8 C 0
s speTri2.JH393342          4217272 9 -   9676502 ATTT--TATAC----
i speTri2.JH393342         C 0 C 0
s cerSim1.JH767782          7115709 7 -  14545593 --TA--TGTGT----
i cerSim1.JH767782         I 17 C 0
s pteAle1.KB030580         19641405 9 -  23789964 --TACGTGtct----
i pteAle1.KB030580         I 15 I 30
s dasNov3.JH567436          1557967 9 -   2788317 ------TGTTTCAGT
i dasNov3.JH567436         C 0 C 0
e zonAlb1.KB913084          1452264 2549 +   4964275 I
e taeGut2.chr3             14009029 6010 - 112617285 I
e equCab2.chr15            84376947 1 +  91571448 I
e triMan1.JH594629         10391146 226 +  24341844 I
e loxAfr3.scaffold_20      28042470 235 -  46401353 I
e orcOrc1.KB316907         11146582 0 +  17242564 C
e rheMac3.chr8             61631768 1 + 150158102 I
e macFas5.chr8             58304569 1 + 146850525 I
e chlSab2.chr8             53231029 3 + 139301422 I

a score=3023.000000
s hg38.chr8_KI270814v1_alt    10879 8 +    141812 ttatttat----
s panTro4.chr8             54951900 1 + 143986469 t-----------
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58990136 8 + 153482349 ttatttat----
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48081796 8 + 100215132 ttatttat----
i nomLeu3.chr16            C 0 C 0
s calJac3.chrUn_GL286234       4338 8 +    110629 ttgtttgt----
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2737249 8 +  10880647 ttgtttgt----
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21545346 8 -  23169006 CTTTTTAG----
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4217281 8 -   9676502 CCATTTAT----
i speTri2.JH393342         C 0 I 60
s pteAle1.KB030580         19641444 8 -  23789964 ctttttGT----
i pteAle1.KB030580         I 30 I 24
s dasNov3.JH567436          1557976 8 -   2788317 ----TTATACCT
i dasNov3.JH567436         C 0 I 240
e zonAlb1.KB913084          1452264 2549 +   4964275 I
e taeGut2.chr3             14009029 6010 - 112617285 I
e equCab2.chr15            84376947 1 +  91571448 I
e triMan1.JH594629         10391146 226 +  24341844 I
e loxAfr3.scaffold_20      28042470 235 -  46401353 I
e cerSim1.JH767782          7115716 0 -  14545593 C
e orcOrc1.KB316907         11146582 0 +  17242564 C
e rheMac3.chr8             61631768 1 + 150158102 I
e macFas5.chr8             58304569 1 + 146850525 I
e chlSab2.chr8             53231029 3 + 139301422 I

a score=10935.000000
s hg38.chr8_KI270814v1_alt    10887 8 +    141812 tcatttat
s ponAbe2.chr8             58990144 8 + 153482349 ttatttat
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48081804 8 + 100215132 ttatttat
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61631769 4 + 150158102 ----tttt
i rheMac3.chr8             I 1 C 0
s macFas5.chr8             58304570 4 + 146850525 ----tttt
i macFas5.chr8             I 1 C 0
s chlSab2.chr8             53231032 6 + 139301422 --actttt
i chlSab2.chr8             I 3 C 0
s calJac3.chrUn_GL286234       4346 8 +    110629 ttattttt
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2737257 8 +  10880647 ttattttt
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21545354 8 -  23169006 TCACATGT
i otoGar3.GL873541         C 0 C 0
s pteAle1.KB030580         19641476 8 -  23789964 ccatttat
i pteAle1.KB030580         I 24 C 0
e zonAlb1.KB913084          1452264 2549 +   4964275 I
e taeGut2.chr3             14009029 6010 - 112617285 I
e dasNov3.JH567436          1557984 240 -   2788317 I
e equCab2.chr15            84376947 1 +  91571448 I
e speTri2.JH393342          4217289 60 -   9676502 I
e triMan1.JH594629         10391146 226 +  24341844 I
e loxAfr3.scaffold_20      28042470 235 -  46401353 I
e cerSim1.JH767782          7115716 0 -  14545593 C
e orcOrc1.KB316907         11146582 0 +  17242564 C
e panTro4.chr8             54951901 0 + 143986469 C

a score=6327.000000
s hg38.chr8_KI270814v1_alt    10895 2 +    141812 tg
s panTro4.chr8             54951901 1 + 143986469 -g
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58990152 2 + 153482349 tg
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48081812 2 + 100215132 tg
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61631773 2 + 150158102 tg
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58304574 2 + 146850525 tg
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53231038 2 + 139301422 tg
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       4354 2 +    110629 tg
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2737265 2 +  10880647 tg
i saiBol1.JH378179         C 0 C 0
s pteAle1.KB030580         19641484 2 -  23789964 ta
i pteAle1.KB030580         C 0 I 413
e zonAlb1.KB913084          1452264 2549 +   4964275 I
e taeGut2.chr3             14009029 6010 - 112617285 I
e dasNov3.JH567436          1557984 240 -   2788317 I
e equCab2.chr15            84376947 1 +  91571448 I
e speTri2.JH393342          4217289 60 -   9676502 I
e triMan1.JH594629         10391146 226 +  24341844 I
e loxAfr3.scaffold_20      28042470 235 -  46401353 I
e cerSim1.JH767782          7115716 0 -  14545593 C
e orcOrc1.KB316907         11146582 0 +  17242564 C
e otoGar3.GL873541         21545362 0 -  23169006 C

a score=227313.000000
s hg38.chr8_KI270814v1_alt    10897 85 +    141812 agatagagtcttcgctctgttgcccaggctggagtgcaatggcgtgatctcggctcactg---taacctctgcctcccgggttcaagc
s panTro4.chr8             54951902 85 + 143986469 agatagagtcttcgctctgttgcccaggctggagtgcaatggcgtgatctcggctcactg---taacctctgcctcccaggttcaagc
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58990154 88 + 153482349 agatagagtcttcgctctgttgcccaggctggagtgcaatggcgtgatctcggctcactgtaataacctctgcctcccgggttcaagc
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48081814 85 + 100215132 agatagagtcttcactctgttgcccaggctggagtgcaatggcatgatctcggctcactg---taacctctgcctcctgggttcaagc
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61631775 84 + 150158102 agataaagtc-tcactctgttgcccaggctggagtgcaatggcgtgatcttggctcactg---taacctccatctcctgggttcaagc
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58304576 84 + 146850525 agataaagtc-tcactctgttgcccaggctggagtgcaatggcgtgatcttggctcactg---taacctccatctcctgggttcaagc
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53231040 84 + 139301422 agatagagtc-tcactctgttgcccaggctggagtgcaatggcgtgatcttgactcactg---taacctccatctcctgggttcaagc
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       4356 84 +    110629 agacggggtc-ttgctctgttgcctaggctagagtgcaatggcatgatcttggctcactg---taacctctgcctcccaggttcaagc
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2737267 84 +  10880647 agatggggtc-ctgctctgttgcctagtctggagtgcaatggcatgatctcggctcactg---caacctccgcctcccaggttcaagc
i saiBol1.JH378179         C 0 C 0
s orcOrc1.KB316907         11146582 23 +  17242564 -------------------------------------------------TTAGCTCCCTT---CAATTTCAGTTT-------------
i orcOrc1.KB316907         C 0 C 0
e zonAlb1.KB913084          1452264 2549 +   4964275 I
e taeGut2.chr3             14009029 6010 - 112617285 I
e dasNov3.JH567436          1557984 240 -   2788317 I
e equCab2.chr15            84376947  1 +  91571448 I
e speTri2.JH393342          4217289 60 -   9676502 I
e triMan1.JH594629         10391146 226 +  24341844 I
e loxAfr3.scaffold_20      28042470 235 -  46401353 I
e pteAle1.KB030580         19641486 413 -  23789964 I
e cerSim1.JH767782          7115716  0 -  14545593 C
e otoGar3.GL873541         21545362  0 -  23169006 C

a score=142784.000000
s hg38.chr8_KI270814v1_alt    10982 63 +    141812 aattctcctgacttagcctcctgaatagctgggattacaggcacctaccaccatgcccggcta
s panTro4.chr8             54951987 63 + 143986469 aattctcctgacttagcctcctgagtagctgggattacaggcacctaccaccatgcccggcta
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58990242 63 + 153482349 aattctcctgacttagcctcctgagtagctgggattacaggcacctaccaccatgcccagcta
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48081899 63 + 100215132 aattctcctgtcttagcctcctgagtagctgggattacaggcacctaccaccatgcctggcta
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61631859 63 + 150158102 aattctcctgccttagcctcctgagtagctgggattacagacacctgccaccatgcccggcta
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58304660 63 + 146850525 aattctcctgccttagcctcctgagtagctgggattacagacacctgccaccatgcccggcta
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53231124 63 + 139301422 aattctcctgccttagcctcctgagtagctgagattacaggcacctgcgaccatgcctggcta
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       4440 60 +    110629 aatt---ctgcctcagcctcctgactagctgggattaaacacaccagccaccatgcctggcta
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2737351 60 +  10880647 aatt---ctgcctcagcctcccgactagctgggattaaaggcaccagccaccatgcctggcta
i saiBol1.JH378179         C 0 C 0
s orcOrc1.KB316907         11146605 17 +  17242564 --ATACCTA---TGTGCTTTTC-----------------------------------------
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84376948 19 +  91571448 AAATCTCTT---TTAGCTCCTT-----------------------------------------
i equCab2.chr15            I 1 C 0
e zonAlb1.KB913084          1452264 2549 +   4964275 I
e taeGut2.chr3             14009029 6010 - 112617285 I
e dasNov3.JH567436          1557984 240 -   2788317 I
e speTri2.JH393342          4217289 60 -   9676502 I
e triMan1.JH594629         10391146 226 +  24341844 I
e loxAfr3.scaffold_20      28042470 235 -  46401353 I
e pteAle1.KB030580         19641486 413 -  23789964 I
e cerSim1.JH767782          7115716  0 -  14545593 C
e otoGar3.GL873541         21545362  0 -  23169006 C

a score=189894.000000
s hg38.chr8_KI270814v1_alt    11045 128 +    141812 attttgta--ttagtagagatggggtttcaccat-gttggtcaaggtggtcttgaactcttgacctcaggtgatccacccaccttggcctcccaaagtgctgggattacaggtgtgagccaccgcgcccag
s panTro4.chr8             54952050 128 + 143986469 attttgta--ttagtagagatggggtttcaccat-gttggtcaagctggtcttgaactcttgacctcaggtgatccacccaccttggcctcccaaagtgctgggattacaggtgtgagccaccgcgcccag
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58990305 128 + 153482349 attttgta--ttagtagagatggggtttcaccat-gttggtcaagctggtcttgaactcttgacctcaggtgatccacccaccttggcctcgcaaagtgctgggattacaggtgtgagccaccgcacccag
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48081962 128 + 100215132 attttgta--ttagtagagatggggtttcaccat-gttggtcaagctggtcttgaactcttgacatcaggtgatccacccaccttggcctcccaaagtgctgggattacaggtgtgacccaccacgcccAA
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61631922 118 + 150158102 attttgta--ttagtagagatggggtttcaccat-tttga----------attgaactcctgacctcgggtgatccacccaccttggcctctcaaagtgctagcattataggcatgagccactgcacccag
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58304723 118 + 146850525 attttgta--ttagtagagatggggtttcaccat-gttga----------attgaactcctgacctcgggtgatccacccaccttggcctctcaaagtgctagcattataggcatgagccactgcacccag
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53231187 118 + 139301422 attttgta--ttagcagagatggggtttcaccat-gttga----------attgaactcctgaccttgggtgatacacccaccttggcctctcaaagtgctaggattataggcatgagccactgcacccag
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       4500 118 +    110629 actttgtattttagtagagatgtggtttccccatggttggtccagctggtcatgaactcctgacctcaggtgatt-------------cccccaaggtgctggaattataggcatgagccaccaggctcag
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2737411 130 +  10880647 actgtgtattttagtagagatgtggtttcatcat-gttggtccagttggtcttgaactcctgacctcaggtgattcacccacctcggcctcccaaagtgctggaattacaggcatgagccaccaggcttgg
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21545362  14 -  23169006 ------------------------------------------------ATTTTG----CTTGACGT-----------------------------------------------------------------
i otoGar3.GL873541         C 0 C 0
s orcOrc1.KB316907         11146622  12 +  17242564 --------------------------------------------------------TGTTTGACTTTA---------------------------------------------------------------
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84376967  21 +  91571448 ----------------------------------------------------TCAATTTTTATTTCTA---------CCCAT-------------------------------------------------
i equCab2.chr15            C 0 C 0
e zonAlb1.KB913084          1452264 2549 +   4964275 I
e taeGut2.chr3             14009029 6010 - 112617285 I
e dasNov3.JH567436          1557984 240 -   2788317 I
e speTri2.JH393342          4217289  60 -   9676502 I
e triMan1.JH594629         10391146 226 +  24341844 I
e loxAfr3.scaffold_20      28042470 235 -  46401353 I
e pteAle1.KB030580         19641486 413 -  23789964 I
e cerSim1.JH767782          7115716   0 -  14545593 C

a score=4541.000000
s hg38.chr8_KI270814v1_alt    11173 3 +    141812 --cTG
s panTro4.chr8             54952178 3 + 143986469 --cTG
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58990433 3 + 153482349 --ctG
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48082090 3 + 100215132 --CTG
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61632040 3 + 150158102 --cTG
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58304841 3 + 146850525 --cTG
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53231305 3 + 139301422 --cTG
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       4618 3 +    110629 --TTG
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2737541 3 +  10880647 --ccG
i saiBol1.JH378179         C 0 I 5749
s triMan1.JH594629         10391372 3 +  24341844 TTC--
i triMan1.JH594629         I 226 C 0
e zonAlb1.KB913084          1452264 2549 +   4964275 I
e taeGut2.chr3             14009029 6010 - 112617285 I
e dasNov3.JH567436          1557984 240 -   2788317 I
e equCab2.chr15            84376988 0 +  91571448 C
e speTri2.JH393342          4217289 60 -   9676502 I
e loxAfr3.scaffold_20      28042470 235 -  46401353 I
e pteAle1.KB030580         19641486 413 -  23789964 I
e cerSim1.JH767782          7115716 0 -  14545593 C
e orcOrc1.KB316907         11146634 0 +  17242564 C
e otoGar3.GL873541         21545376 0 -  23169006 C

a score=2104.000000
s hg38.chr8_KI270814v1_alt    11176 1 +    141812 A
s panTro4.chr8             54952181 1 + 143986469 A
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58990436 1 + 153482349 A
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48082093 1 + 100215132 A
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61632043 1 + 150158102 G
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58304844 1 + 146850525 G
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53231308 1 + 139301422 G
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       4621 1 +    110629 A
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2743293 1 +  10880647 A
i saiBol1.JH378179         I 5749 C 0
s loxAfr3.scaffold_20      28042705 1 -  46401353 a
i loxAfr3.scaffold_20      I 235 C 0
s triMan1.JH594629         10391375 1 +  24341844 A
i triMan1.JH594629         C 0 C 0
e zonAlb1.KB913084          1452264 2549 +   4964275 I
e taeGut2.chr3             14009029 6010 - 112617285 I
e dasNov3.JH567436          1557984 240 -   2788317 I
e equCab2.chr15            84376988 0 +  91571448 C
e speTri2.JH393342          4217289 60 -   9676502 I
e pteAle1.KB030580         19641486 413 -  23789964 I
e cerSim1.JH767782          7115716 0 -  14545593 C
e orcOrc1.KB316907         11146634 0 +  17242564 C
e otoGar3.GL873541         21545376 0 -  23169006 C

a score=111619.000000
s hg38.chr8_KI270814v1_alt    11177 36 +    141812 AAAGTGTATATTTTAATATCTTTTTGATGTCTTTTC
s panTro4.chr8             54952182 36 + 143986469 AAAGTGTATATTTTAATATCTTTTTGATGTCTTTTC
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58990437 36 + 153482349 AAAGTGTATATTTTAATTTCTTTTTGATGTCTTTTC
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48082094 36 + 100215132 AAAGTGTATATTTTAATCTCTTTTTGATGTCTTTTC
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61632044 36 + 150158102 AAAGTGTATATTTTAATCTCTTTTTGATGTCTTTTC
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58304845 36 + 146850525 AAAGTGTATATTTTAATCTCTTTTTGATGTCTTTTC
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53231309 36 + 139301422 AAAGTGTATATTTTAATCTCTTTTTGATGTCTTTTC
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       4622 36 +    110629 AAAGCGTATATTTTAATCTCTTTTTGACGTCTTTTC
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2743294 36 +  10880647 AAAGTGTGTATTTTAATCCCTTTTTGATGTCTTTTC
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21545376  5 -  23169006 -------------------------------TTTCT
i otoGar3.GL873541         C 0 C 0
s orcOrc1.KB316907         11146634 12 +  17242564 --------CTTTTTGTTTTT----------------
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84376988 18 +  91571448 ---ATGTGTTTTTCGGTTTCG---------------
i equCab2.chr15            C 0 C 0
s pteAle1.KB030580         19641899 21 -  23789964 GAAGTGTGTGTTTTGGCCTTC---------------
i pteAle1.KB030580         I 413 C 0
s loxAfr3.scaffold_20      28042706 34 -  46401353 aaaatgtatagttaaa--ttttttttaGCTTCTTTC
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10391376 36 +  24341844 AAAGTGTGTATTTAGATCTCTTTTTTAGCTTCTTTC
i triMan1.JH594629         C 0 C 0
e zonAlb1.KB913084          1452264 2549 +   4964275 I
e taeGut2.chr3             14009029 6010 - 112617285 I
e dasNov3.JH567436          1557984 240 -   2788317 I
e speTri2.JH393342          4217289 60 -   9676502 I
e cerSim1.JH767782          7115716  0 -  14545593 C

a score=34552.000000
s hg38.chr8_KI270814v1_alt    11213 27 +    141812 TATTTTAGTT---TATAGCCAT-ATATAT--At
s panTro4.chr8             54952218 27 + 143986469 TATTTTAGTT---TATAGCCAT-ATATAT--AT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58990473 27 + 153482349 TGTTTTAGTT---TGTAGCCAT-ATATAT--AT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48082130 27 + 100215132 TATTTTAGTT---TATAGCCAT-ATATAT--AT
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61632080 27 + 150158102 TATTTTAGTT---TATAGCCAT-ATATAT--TT
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58304881 27 + 146850525 TATTTTAGTT---TATAGCCAT-ATATAT--TT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53231345 27 + 139301422 TATTTTAGTT---TATAGCCAT-ATGTAT--TT
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       4658 25 +    110629 TATTTTAGTT---TATAGCCAT-ATATA----T
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2743330 25 +  10880647 TATTTTAGTT---TATAGCCAT-ATATA----T
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21545381  6 -  23169006 TATTT---------------------------T
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4217349 31 -   9676502 tattttagttgtagatggacacaatgtct--at
i speTri2.JH393342         I 60 C 0
s orcOrc1.KB316907         11146646 23 +  17242564 --TTTCTTGT---TAT--CCGT-ACATGCTT--
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84377006 20 +  91571448 CTTTACTTTT---TCT-----T-TCTTGT----
i equCab2.chr15            C 0 I 2
s pteAle1.KB030580         19641920 25 -  23789964 AGTTCCATTT---CATAGCTGT-ACttgt----
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20      28042740 25 -  46401353 CATTTCACTT---TATACTCAT-CTATGT----
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10391412 25 +  24341844 TATTTCAGTT---TATACTCAT-CTATGT----
i triMan1.JH594629         C 0 C 0
e zonAlb1.KB913084          1452264 2549 +   4964275 I
e taeGut2.chr3             14009029 6010 - 112617285 I
e dasNov3.JH567436          1557984 240 -   2788317 I
e cerSim1.JH767782          7115716  0 -  14545593 C

a score=77962.000000
s hg38.chr8_KI270814v1_alt    11240 24 +    141812 ttttctgtttg------actttttctttct
s panTro4.chr8             54952245 24 + 143986469 TTTTCTGTTTG------ACTTTTTCTTTCT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58990500 24 + 153482349 TTTTCTGTTTG------ACTTTTTCTTTCT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48082157 24 + 100215132 TTTTCTGTTTG------GCTTTTTCTTTCT
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61632107 29 + 150158102 TTTTCTGTTTGACTTT-ACTTTTTCTTTCT
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58304908 29 + 146850525 TTTTCTGTTTGACTTT-ACTTTTTCTTTCT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53231372 29 + 139301422 TTTTCTGTTTGACTTT-ACTTTTTCTTTCT
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       4683 29 +    110629 TTTACTGTTTGACTTT-ACTTTTTCTTATT
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2743355 29 +  10880647 TTTACTGTTTGACTTT-ACTTTTTGTTATT
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21545387  9 -  23169006 TTTCTTGTT---------------------
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4217380 19 -   9676502 atttttgtttg-----------tttatttt
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907         11146669  5 +  17242564 -------------------------TTTCC
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84377028  8 +  91571448 ----------------------TTTTTTCT
i equCab2.chr15            I 2 C 0
s cerSim1.JH767782          7115716 29 -  14545593 TTTTCTGTTTGACTTT-ACTTTTTCTTTCT
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19641945 29 -  23789964 ctttctctttgacttt-gctttttctttct
i pteAle1.KB030580         C 0 I 11
s loxAfr3.scaffold_20      28042765 23 -  46401353 TTTTCTGCTTGACTTG-ACTTGTT------
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10391437 24 +  24341844 TTTTCTGCTTGACTTGTTCTTTTT------
i triMan1.JH594629         C 0 C 0
e zonAlb1.KB913084          1452264 2549 +   4964275 I
e taeGut2.chr3             14009029 6010 - 112617285 I
e dasNov3.JH567436          1557984 240 -   2788317 I

a score=-7958.000000
s hg38.chr8_KI270814v1_alt    11264 11 +    141812 tatgttcttct
s panTro4.chr8             54952269 11 + 143986469 TATGTTCTTCT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58990524 11 + 153482349 TATGTTCTTCT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48082181  8 + 100215132 TATG---TTCT
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61632136 11 + 150158102 TATGTTTTTCT
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58304937 11 + 146850525 TATGTTTTTCT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53231401 11 + 139301422 TATGTTTTTCT
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       4712 10 +    110629 T-TTTTCTTGT
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2743384 10 +  10880647 T-TTTTCTTGT
i saiBol1.JH378179         C 0 C 0
s speTri2.JH393342          4217399 11 -   9676502 tatgtggtgct
i speTri2.JH393342         C 0 I 52
s equCab2.chr15            84377036  3 +  91571448 TGT--------
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7115745  3 -  14545593 TGT--------
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19641985  3 -  23789964 TGT--------
i pteAle1.KB030580         I 11 C 0
s loxAfr3.scaffold_20      28042788  7 -  46401353 ----CTTTTCA
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10391461  7 +  24341844 ----TCCTTGA
i triMan1.JH594629         C 0 C 0
e zonAlb1.KB913084          1452264 2549 +   4964275 I
e taeGut2.chr3             14009029 6010 - 112617285 I
e dasNov3.JH567436          1557984 240 -   2788317 I
e orcOrc1.KB316907         11146674  0 +  17242564 C
e otoGar3.GL873541         21545396  0 -  23169006 C

a score=205903.000000
s hg38.chr8_KI270814v1_alt    11275 41 +    141812 --------------------------tatctgtatatgctca------ttttctttc-tacttAGGCCTTGGTA
s panTro4.chr8             54952280 41 + 143986469 --------------------------TATCTGTATATGCTCA------TTTTCTTTC-TACTTAGGCCTTGGTA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58990535 41 + 153482349 --------------------------TATCTGTATATGCTCA------TTTTCTTTC-TACTTAGGCCTTGGTA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48082189 41 + 100215132 --------------------------TATCTGTATATGCTCA------TTGTCTTTC-TACTCAGGCCTTGGTA
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61632147 41 + 150158102 --------------------------TGTCTGTATATGCTCA------TTTTCTTTC-TACTTAGGCCTTGGTA
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58304948 41 + 146850525 --------------------------TGTCTGTATATGCTCA------TTTTCTTTC-TACTTAGGCCTTGGTA
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53231412 41 + 139301422 --------------------------TATCTGTATATGCTCA------TTTTCTTTC-TACTTAGGCCTTGGTA
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       4722 41 +    110629 --------------------------TATCAGTATATGCTCA------TTTTCTTTC-TTCTTAGGCCTTGATA
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2743394 38 +  10880647 --------------------------TATTGGTATATGCTCA------TTTTCT----TTCTTAGGCTTTGATA
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21545396 46 -  23169006 ---------------------------ATCTGTATATGCCCCCACCCTTTTTTTTCT-CACTTAGGCTTTTACT
i otoGar3.GL873541         C 0 C 0
s orcOrc1.KB316907         11146674 24 +  17242564 ------------------------------------------------CCCCTTTTC--ACTTAGGCCTTTACA
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84377039 40 +  91571448 --------------------------TGTCCATATAAGCTTA------TTTTTTTTC--ACTGAGGCCTTTACA
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7115748 40 -  14545593 --------------------------CGTCCATATATGCTTG------TTTTTTTTC--ACCTAGGCCTTTACA
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19641988 40 -  23789964 --------------------------CATCCACATATGCTTA------TTTTTTTTC--ACTTAGGCCTTTACG
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20      28042795 50 -  46401353 TA------------------TTTTTGTATATGTATATACTCA------TTACTTTTCCTACTTAGGCCTTTACa
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10391468 68 +  24341844 TATATATATGCATATAtgtgtgtgtgtgtgtgtgtgtATTCA------TTACTTTTCCCACTTAGGCCTTTACA
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436          1558224 40 -   2788317 ----------------------------TATGTTCTTTTTGT------TTTTTTTTTTCATGTAGGTCCTTGCA
i dasNov3.JH567436         I 240 C 0
e zonAlb1.KB913084          1452264 2549 +   4964275 I
e taeGut2.chr3             14009029 6010 - 112617285 I
e speTri2.JH393342          4217410 52 -   9676502 I

a score=319746.000000
s hg38.chr8_KI270814v1_alt    11316 35 +    141812 GTAATTAAAAATG--TTTAATC-GGTCAGACC--TTAAGA
s panTro4.chr8             54952321 35 + 143986469 GTAATTAAAAATG--TTTAATG-GGTCAGACC--TTAAGA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58990576 35 + 153482349 GTAATTAAAAATG--TTTAATG-GGTCAGACC--TTAAGA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48082230 35 + 100215132 GTAATTAAAAATG--TTTAATG-GGTCAGACC--TTAAGA
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61632188 35 + 150158102 GTAATTAAAAATG--TTTAATG-GGTCAGACC--TTAAGA
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58304989 35 + 146850525 GTAATTAAAAATG--TTTAATG-GGTCAGACC--TTAAGA
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53231453 35 + 139301422 GTAATTAAAAATG--TTTAATG-GGTCAGACC--TTAAGA
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       4763 35 +    110629 GTAGTTAAAAATG--TTTAATG-GGTCAGGCC--TTAAGA
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2743432 35 +  10880647 GTAGTTAAAAATG--TTTAATG-GGTCAGGCC--TTAAGA
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21545442 35 -  23169006 TCGATTTAAAATG--TTTAATG-GGTCAGACC--TTAAGA
i otoGar3.GL873541         C 0 C 0
s orcOrc1.KB316907         11146698 35 +  17242564 TTAATTTAAAATG--TTTAATG-AGTCCAGAC--TTCAGA
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84377079 35 +  91571448 TTAATTTAAAATG--TTTAATG-GGTCAGACC--TTAAGA
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7115788 35 -  14545593 TTAATTTAAAATG--TTTAATG-GGTCAGACC--TTAAGA
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19642028 37 -  23789964 TTAATTTAAAATGTTTTTAACT-GATCAGACT--TTAAGA
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20      28042845 37 -  46401353 ttaatttaaaata--ttaaata-GATCTAACTCTTTAAGA
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10391536 37 +  24341844 TTAATTTAAAATA--TTAAATG-GATCCAACTCTTTAAGA
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436          1558264 37 -   2788317 TTAATTTAAAATG--TTAAATG-AGTCATACCTTTTAGGA
i dasNov3.JH567436         C 0 C 0
s taeGut2.chr3             14015039 36 - 112617285 GAAATAAAAAATA--CTTAGTATAGCCAAGTG--CTAAGA
i taeGut2.chr3             I 6010 C 0
e zonAlb1.KB913084          1452264 2549 +   4964275 I
e speTri2.JH393342          4217410 52 -   9676502 I

a score=1140049.000000
s hg38.chr8_KI270814v1_alt    11351 171 +    141812 ATTTCACTCA---AATACACAAGATG---GGACT------TAGAGCATTACTATGTATTGTC--C--AGTTATTTTTTATGTA-CAATACCA-TCT-----ATTTATTTTAGCCTAGTTTTACATGGTATATATAATATATTTCTTTGACCAG--------------------------------------CCA--------GGGTTTAAATA-TTTCAGATGAAGGATTTGGACTTCTG-T
s panTro4.chr8             54952356 174 + 143986469 ATTTCACCCA---AATACACAAGATG---GGACT------TAGAGCATTACTATGTATTGTC--C--AGTTATTTTTTATGTA-CAATACCA-TCTG-TCTATTTATTTTAGCCTAGTTTTACATGGTATATATAATATATTTCTTTGACCAG--------------------------------------C-A--------GGGTTTAAATA-TTTCAGATGAAGGATTTGGACTTCTG-T
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58990611 175 + 153482349 ATTTCACCCA---AATACACAAGATG---GGACT------GAGAGCATTGCTATGTATTGTC--C--AGTTATTTTTTATGTA-CAATACGA-TCTG-TCTATTTATTTTAGCCTAGTTTTACATGGTATATATAATATATTTCTTTGACCAG--------------------------------------CCA--------GGGTTTAAAGA-TTTCAGATGAAGGATTTGGACTTCTG-T
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48082265 172 + 100215132 ATTTCACCCA---AATACACAAGATG---GGACT------TAGAGCATTACTGTGTATTGTC--C--AGTTATTTTTTATGTA-CAATACGA-TCT-----ATTTCTTTTAGCCTAGTTTTACATGGTATATATAATATATTTCTTTGACCAG--------------------------------------CCA--------GGGTTTAAATA-TTTCAGATGAAGGATTTGGACTTCTGTT
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61632223 163 + 150158102 ATTTCACCCA---AATACACAAGATT---TGACT------TAGAGCATTACTATGTATTGTC--C--AGTTATTTTTTATGTA-CAATACAA-TCT-----ATTTCTTTTAGCCTAGTTTTA---GGTAT-----ATATATTTCTTTGACCAG--------------------------------------ACA--------GGGTTCAAATC-TTTCAGATGAAAGATTTGGACTTCTG-T
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58305024 166 + 146850525 ATTTCACCCA---AATACACAAGATT---TGACT------TAGAGCATTACTATGTATTGTC--C--AGTTATTTTTTATGTA-CAATACAA-TCT-----ATTTCTTTTAGCCTAGTTTTACATGGTAT-----ATATATTTCTTTGACCAG--------------------------------------ACA--------GGGTTCAAATC-TTTCAGATGAAAGATTTGGACTTCTG-T
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53231488 166 + 139301422 ATTTCACCCA---AATACACAAGATT---TGACT------TAGAGCATTACTATGTATTGTC--C--AGTTATTTTTTATGTA-CAATACGA-TCT-----ATTTCTTTTAGCCTAGTTTTACATGGTAT-----ATATATATCTTTGACCAG--------------------------------------ACA--------GGGTTTAAATC-TTTCAGATGAAGGATTTGGACTTCTG-T
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       4798 174 +    110629 ATTTCACCCA---AATACACAAGATG---GGACT------TAGAGCATTCCTATATGTTGTC--C--ACCTATTTTTAATGTA-CAATGCAA-TCTG-TTTATTTCTTTTAGCCTACTTGTACATGGTATATATAATATATTTCTTTGACCAG--------------------------------------ACA--------GGGTTTAAGTC-TTTCAGAGGAA-GATTTGGACTTCTA-T
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2743467 174 +  10880647 ATTTCACCCA---AATATACAAGATG---GGACT------TAGAGCATTCCTATATATTGTC--C--AGTTATTTTTAATGTA-CAATGCAA-TCTG-TTTATTTCTTTTAGCCTACTTTTACATGGTATATATAATATATTTGTTTGACCAG--------------------------------------ACA--------GGGTTTAAATC-TTTCAGAGGAA-GATTTGGACTTGTA-T
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21545477 165 -  23169006 ATTTCTCCCA---GATACACTAGGTG---GGGCT------CAGCGCGTTCCTGTGTGTTGTTCAC--AGTTCCTGTTTATGTA-TAATGCTG-TCT-----GTTTCTTTCAGTCTGC-----CGTGCGTTATGTAATATATTTCTGTGAATAT--------------------------------------GTA--------GGCTTTAGAAT-TTTAAATTTAGGGATTTAGACTT----A
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4217462 175 -   9676502 ctacaacccA---GTTACACTAGATGGATGGGAT------TTGAACATTCTTATGTGTTGCT--CAAAGTTATTGTCCATGTA-TTATACAATTCTA-CTTACATCTTTCAGTCTAGTTTTATGTGGTGT-----GCATATTT-TTTGAACAG--------------------------------------CTG--------GGTTTTAAATG-TTTAAAACGAATAATTTGTACTTCTC-C
i speTri2.JH393342         I 52 C 0
s orcOrc1.KB316907         11146733 176 +  17242564 ATTTCATTCA---AATATACTGGATG---GGGCT------TGTAGCATTACTC--TGTTGTC--TAAAGTTATTGTTTATGTA-TAATACAGTTCTG-TTTATTTCTTTCAGTCTAGTTTTACATGGTATGTGTAATATGTTTCTTTGAACAA--------------------------------------CAA--------GGGTTTAAATCTTTTTAAGTGAAGGATTTGGACTCCC--T
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84377114 179 +  91571448 ATTTCACTCA---CATATACTAGATG---GGACT------TAGAGCATTCCTGTGTGTCATC--TGGAGGTGCTGTTTATGTCTTAATACAGTTCTG-TTTATTTCTTCCACTCTTGTTTTACGTGGTATGTCTAACGTATTTCTTTGAACAG--------------------------------------CCA--------GGGTTTAAATC-TTTAAAATGAAGGATTTTGACTTCCT-T
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7115823 178 -  14545593 ATTTCACTTA---AATATACTAGATG---GGAAT------TAGAGCATTCCTGTGTGTCATC--CAGAGTTACTGTTTATGTC-TAACACAGTTCTG-TTTATTTCTTCCAGTCTAGTTTTACATGGTATGTCTAACATATTTCTTTGAACAG--------------------------------------CCA--------GGCTTTAAATC-TTTAAAATGAAGGATTTAGACTTCCT-T
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19642065 213 -  23789964 ATTTCACTTT---AATGTATTAGATG---GGACT------TTTAGCATTCCTAGGTGTTGGC--CAAAGATA----TTATGTG-TAATATAGTTTCATTTTTTTTCTTTCGGTCTAGTTTTACATGGTATGTGCAATGTATTTCTTTGAACAGGAGGGtttaagtctttattttatttatttatttatcttttt--------GGGTTTAAGTC-TTTAAAATGAAGGATTTGGTCTTCCG-T
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20      28042882 158 -  46401353 ATTTTACTCA---AATACACTGGATG---GGACT------AACAGCATGC----------------AAGTTATTGTTTCTGTG-CAATACAGTTCTG-----TTTCTTTCAGTCTAGTTTTACATGGTATGTGCAATACATTTTTTTTAACAG--------------------------------------TCA--------AGGTTT--ATC-TGTAAAATAAAGAATTTGGGCTTCGC-T
i loxAfr3.scaffold_20      C 0 I 192
s triMan1.JH594629         10391573 184 +  24341844 ATTTCACTCA---GATACACTAGATG---GGACTCAAATACACAACATTCCTATGTGTTGTC--CAGAGTTATTGTTTATGTG-TAATACAGTTCTG-TTTATTTCTTTCAGTCTAGTTTTAAATCATATGTGTAATACATTTTTCTTAACAG--------------------------------------TCA--------GGGTTTAAATC-TGTAAAACAAAGGATTTGGACTTCTT-G
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436          1558301 169 -   2788317 ATTTCACTCA---ATTATGTTAGATG---GGACT------TGTAGTATTTGTAAATGTTGTC--CAAAGTTATTG----TGTG-TAATACAATTCTG-----TTACTTTTAATCTAGTTTTACATAGTGTGTGTAATACATTCCTTTGAACAG--------------------------------------CCA---------GATTTAAatc-tgtacaatgaaggatttgaactactc-t
i dasNov3.JH567436         C 0 I 1
s taeGut2.chr3             14015075 172 - 112617285 AGTTCTTGCAGTCATTACTCATCACA---GGCAC------AGCAGCA---------ACTGTG--A--AGTCAGTATGCTTGCA-AAAGGAAGCTCTG-----GGTGATTTGGTGTATGATTACTTAGAGTGAATAATCTGTTTTATTAATAGA--------------------------------------TCATACCACATGGAAATGCACA-ATGCATACAAGTAATGCACCATTTT---
i taeGut2.chr3             C 0 C 0
e zonAlb1.KB913084          1452264 2549 +   4964275 I

a score=36708.000000
s hg38.chr8_KI270814v1_alt    11522  8 +    141812 ------AAGTACTG--
s panTro4.chr8             54952530  8 + 143986469 ------AAGTACTG--
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58990786  8 + 153482349 ------AAGTACTG--
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48082437  8 + 100215132 ------AAGTACTG--
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61632386  7 + 150158102 ------AAG-ACTG--
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58305190  7 + 146850525 ------AAG-ACTG--
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53231654  7 + 139301422 ------AAG-ACTG--
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       4972  8 +    110629 ------AAGCACTG--
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2743641  8 +  10880647 ------AAGTACTG--
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21545642  8 -  23169006 ------GAGCACTT--
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4217637  8 -   9676502 ------GAGTACTC--
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907         11146909  8 +  17242564 ------GAGTATTT--
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84377293  8 +  91571448 ------GAGTACTT--
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7116001  8 -  14545593 ------GAGTACTT--
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19642278  8 -  23789964 ------GAGTGCTT--
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20      28043232  8 -  46401353 ------AGGTACTT--
i loxAfr3.scaffold_20      I 192 C 0
s triMan1.JH594629         10391757  8 +  24341844 ------TGGTACTG--
i triMan1.JH594629         C 0 I 190
s dasNov3.JH567436          1558471  8 -   2788317 ------aggtactt--
i dasNov3.JH567436         I 1 C 0
s taeGut2.chr3             14015247 16 - 112617285 AAACAAGAGTCATCTG
i taeGut2.chr3             C 0 C 0
e zonAlb1.KB913084          1452264 2549 +   4964275 I

a score=115090.000000
s hg38.chr8_KI270814v1_alt    11530 16 +    141812 AA---CAGTTTTTACATTC
s panTro4.chr8             54952538 16 + 143986469 AA---CAGTTTTTACATTC
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58990794 16 + 153482349 AA---CAGTTTTTACATTC
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48082445 16 + 100215132 AA---CAGTTTTTACATTC
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61632393 16 + 150158102 AA---CAGTTTTTAAATTC
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58305197 16 + 146850525 AA---CAGTTTTTAAATTC
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53231661 16 + 139301422 AA---CAGTTTTTAAATTC
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       4980 19 +    110629 AGCAGCAGTTTTTAAATTC
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2743649 19 +  10880647 AACAGCAGTTTTTAAATTC
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21545650 16 -  23169006 AA---GAATTTTAAAGTTC
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4217645 16 -   9676502 AA---CAGTTTTAAATTTC
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907         11146917 16 +  17242564 AA---CAGTTTAAAAATTC
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84377301 16 +  91571448 TA---CAGTGTAAAAATTC
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7116009 16 -  14545593 TA---CCGTTTAAAAATTC
i cerSim1.JH767782         C 0 I 10
s pteAle1.KB030580         19642286 16 -  23789964 AA---CAGTTTAAAAATTC
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20      28043240 16 -  46401353 CA---TGGTTTTAAAATTC
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10391955 16 +  24341844 AA---CAGTTTTAAAATAC
i triMan1.JH594629         I 190 C 0
s dasNov3.JH567436          1558479 15 -   2788317 aa---cagtttttaaa-gc
i dasNov3.JH567436         C 0 C 0
s taeGut2.chr3             14015263 16 - 112617285 ---GGTAGCTTTCTTTTTC
i taeGut2.chr3             C 0 C 0
e zonAlb1.KB913084          1452264 2549 +   4964275 I

a score=8661.000000
s hg38.chr8_KI270814v1_alt    11546 10 +    141812 -TGGCCTCTCT
s panTro4.chr8             54952554 10 + 143986469 -TGGCCTCTCT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58990810 10 + 153482349 -TGGCCTGTCT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48082461 10 + 100215132 -TGGCCTGTCT
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61632409 10 + 150158102 -TTGCTTCTCT
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58305213 10 + 146850525 -TTGCTTCTCT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53231677 10 + 139301422 -TTGCCTCTCT
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       4999 10 +    110629 -TTACCTCTCT
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2743668 10 +  10880647 -TTACCTCTCT
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21545666 10 -  23169006 -TTGCATGTGA
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4217661  1 -   9676502 -T---------
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907         11146933  9 +  17242564 -TTGGATCTC-
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84377317  2 +  91571448 ---------CT
i equCab2.chr15            C 0 I 1
s pteAle1.KB030580         19642302 10 -  23789964 -AAGAATCTCT
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20      28043256 10 -  46401353 -TTGAATCTCT
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10391971 10 +  24341844 -TTGAGTCTCT
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436          1558494 10 -   2788317 -ttgtgactct
i dasNov3.JH567436         C 0 C 0
s taeGut2.chr3             14015279 10 - 112617285 TTGGTATCCT-
i taeGut2.chr3             C 0 C 0
e zonAlb1.KB913084          1452264 2549 +   4964275 I
e cerSim1.JH767782          7116025 10 -  14545593 I

a score=492630.000000
s hg38.chr8_KI270814v1_alt    11556 110 +    141812 CTGCTTTATG-----------------------------------------------ATAG-----------------------------------------------------------TTT-----TTGC-TTTATGTTCTTTATGAGATGTTCATAA-TGTAGTTAA---TGCAC--GTGCTATAACAGACCCATGTGCAAATTA-AAATATTTT-----------AATAC-ATATAA
s panTro4.chr8             54952564 110 + 143986469 CTGCTTTATG-----------------------------------------------ATAG-----------------------------------------------------------TTT-----TTGC-TTTATGTTCTTTATGAGATGTTCATAA-TGTAGTTAA---TGCAT--GTGCTATAACAGACCCATGTGCaaatta-aaatatttt-----------aatac-atataa
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58990820 110 + 153482349 CTGCTTTATG-----------------------------------------------ATAG-----------------------------------------------------------TTT-----TTGC-TTTATGTTCTTTATGAGATGTTCATAA-TGTAGTTAA---TGCAT--GTGCTATAACAGACCCATGTGCaaatta-aaatatttt-----------aatac-atataa
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48082471 110 + 100215132 CTACTTTATG-----------------------------------------------ATGG-----------------------------------------------------------TTT-----TTGC-TTTATGTTCTTTATGAGATGTTCATAA-TGTAGTTAA---TGCAT--GTGCTATGACAGACCCATATGCAAATTA-AAATATTTT-----------AATAC-ACATAA
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61632419 110 + 150158102 CTTCTTTATG-----------------------------------------------ATAG-----------------------------------------------------------TTT-----TTGC-TTTATGTTCTTTATGAGATGTTCATAA-CATAGTTAA---TGCAT--GTGCTATAACAGACCCATGTGCaaatta-aaatatttt-----------aaaac-atataa
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58305223 110 + 146850525 CTTCTTAATG-----------------------------------------------ATAG-----------------------------------------------------------TTT-----TTGC-TTTATGTTCTTTATGAGATGTTCATAA-CATAGTTAA---TGCAT--GTGCTATAACAGACCCATGTGCAAATTA-AAATATTTT-----------AAAAC-ATATAA
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53231687 110 + 139301422 CTTCTTTATG-----------------------------------------------GTAG-----------------------------------------------------------TTT-----TTGC-TTTATGTTCTTTGTGAGATGTTCATAA-CGTAGTTAA---TGCAT--GTGCTATAACAGACCCATGTGCAAATTA-AAATATTTT-----------AATAC-ATATAA
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       5009 121 +    110629 -------ATG-----------------------------------------------ATAT-----------------------------------------------------------TTT-----CTGC-TTTATGTTCTTTATGAGATGTTCATAATTGTAGCTATTGCTACATGGGTGCTATAACAGACCCATGTGCAAATTCAAAATATTATAATTTATACACAATAT-GTATAA
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2743678 104 +  10880647 -------ATG-----------------------------------------------ATAT-----------------------------------------------------------TTT-----CTGC-TTTATGTTCTTTATGAGACGTTCGTAATTGTAGATAT---TACAT--GTGCTATAACAGACCCATGTGCAAATTC-AAATATTGT-----------AATAC-ATGTAA
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21545676 206 -  23169006 CTGCTTTTTACTTAATTATTTTTGGAGAAAAGGCATAAAAAATTTATTAACGTGTGCATAGGATTAACCACGAGTGATTCCTCCAGGATCATTCTGTTTTCTTTTTCTTTTCTTTTTCCTTTT-----TTGC-TTTATGGTCTTTATGAG-----------TGTTGTTAC---TACAC--TTGCTCTAACAGATCCATATG-AAATTA-AAATATTTT-----------AATACAATATGA
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4217662  98 -   9676502 --------TG-----------------------------------------------AATC-----------------------------------------------------------TAT-----CTGC-TTTATAGTCTTTATGAGGTGTTTATTG-TATCATTGT----------TTTCTAAAACAGATCCGTGTGTAAATTA-AAATCTTTT-----------GACACAATATAA
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907         11146942  90 +  17242564 --------------------------------------------------------------------------------------------------------------------------T-----TTGT-TTTATATACTTTGTAAGCTGTTCATAG-TGTAGTTTT---TGCAC--TCTCTGTAACAAATCCATTTGTAAATTA-AAATATTTT-----------A-----ATATAA
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84377320  94 +  91571448 ---------------------------------------------------------------------------------------------------------------------------AATCTCTGC-TTTACGTCCTTGATAAGCTATTCGTAG-GGTAGTTGT---TGCAC--TGTCTTTAACAAATCCTTGTGTAAATTA-AGATATTTT-----------A-----CAATAA
i equCab2.chr15            I 1 C 0
s cerSim1.JH767782          7116035  89 -  14545593 --------------------------------------------------------------------------------------------------------------------------------CTGC-TTTATGTCCTTGATAAGATATTTGTAG-TGTAGTTGT---TGCAC--TCTCTATAACAGATCCTTGTGTAAGTTA-AAATATTTC-----------A-----ATATAA
i cerSim1.JH767782         I 10 C 0
s pteAle1.KB030580         19642312  83 -  23789964 --------------------------------------------------------------------------------------------------------------------------------CTGC-TTTATGGACTTTATAAGAT-TTCATGG-TATAGTTGT----------ACTCTATAACAAATCCATGTATACATTA-AAACATTTT-----------A-----ATATGA
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20      28043266  84 -  46401353 --------------------------------------------------------------------------------------------------------------------------------CTAA-TTTATGATCCTAATGAGATAGTCATAA-TATAGTTGT---TACAC--TCTCTATAGCAGATTTATGTGTAAATTA-AAATAT---------------------TGTAA
i loxAfr3.scaffold_20      C 0 I 1
s triMan1.JH594629         10391981  90 +  24341844 --------------------------------------------------------------------------------------------------------------------------------CTGCTTTTATGATCCCAATGAGATATTCATAA-TGTAGTTGT---TGTAC--TCTGTATAGCAGATTCATGTGTAAATTA-AAATACTGT-----------A-----ATGTAA
i triMan1.JH594629         C 0 I 1
s dasNov3.JH567436          1558504  86 -   2788317 --------------------------------------------------------------------------------------------------------------------------------ctgc-ttTATAATCTTTTTGAGATTTTCATAG-TGCAGGTGT------AT--TCTCAAGAACAGATTCATGTGTAAATTG-AAATATTGT-----------A-----ATATAA
i dasNov3.JH567436         C 0 C 0
s taeGut2.chr3             14015289  96 - 112617285 GTTCTTTCTG-----------------------------------------------GGAG-----------------------------------------------------------TGT-----CTGC-TTTAAATCCTATAT------CCTGGAA-GCTCTTTAA---TAAGT--GT-------CAGGCTTTTCAGCTCATTG-AGGTTTCTT-----------CTTTT-GCTTC-
i taeGut2.chr3             C 0 I 6
e zonAlb1.KB913084          1452264 2549 +   4964275 I

a score=97855.000000
s hg38.chr8_KI270814v1_alt    11666 32 +    141812 ACTTAA-------------TTTTT----ATAGCTCC---C----TTTAATG-CTTAT
s panTro4.chr8             54952674 32 + 143986469 acttaa-------------ttttt----ataGCTCC---C----TTTAGTG-CTTAT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58990930 32 + 153482349 acttaa-------------ttttt----ataGCTCC---C----TTTAATG-CTTAT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48082581 30 + 100215132 AC--AA-------------TTTTT----ATAGCTCC---C----TTTAATG-CTTAT
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61632529 32 + 150158102 acttaa-------------ttttt----GTAGCTCC---C----TTTAATG-CTTAC
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58305333 32 + 146850525 ACTTAA-------------TTTTT----GTAGCTCC---C----TTTAATG-CTTAT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53231797 32 + 139301422 ACTTAA-------------TTCTT----GTAGCTCC---C----TTTAATG-CTTAT
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       5130 32 +    110629 ACTTCA-------------TCTTT----GTAGCTCC---C----TTTAATG-ATTAT
i calJac3.chrUn_GL286234   C 0 I 199
s saiBol1.JH378179          2743782 32 +  10880647 AATTCA-------------TTTTT----GTAGCTCT---C----TTTAATG-TTTAT
i saiBol1.JH378179         C 0 I 203
s otoGar3.GL873541         21545882 32 -  23169006 ACTTTA-------------TTTCT----GTAGCTCC---T----TTTAATG-CTGAT
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4217760 49 -   9676502 GTTTGATTTTTTTTTTTTTTTTTT----GTAGCTCT---CTTCATTCAACA-TTCAT
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907         11147032 36 +  17242564 ACTGTA-------------TTTTTGTAGCTCCCTTT---A----TTTCACA-CTTAT
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84377414 33 +  91571448 GCTTTT-------------TTTCG-TATCTCCCTTC---A----TTTAACA-CTC--
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7116124 30 -  14545593 GCTTCA-------------TTTAA------CCCTTC---A----TTTGACA-CTCAG
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19642395 30 -  23789964 GTTTTG-------------TTTTT----GTAGCTTC---C----TTTAATG-CAT--
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20      28043351 30 -  46401353 AGCCAA-------------TTTTT----GCAGCTCC---C----TTTGGCA---CTT
i loxAfr3.scaffold_20      I 1 C 0
s triMan1.JH594629         10392072 32 +  24341844 AGTCTA-------------TTTTT----GTAGCTCT---T----TTTGATA-TTCCT
i triMan1.JH594629         I 1 C 0
s dasNov3.JH567436          1558590 35 -   2788317 AATCTA-------------TTTTT----GCAAGTCCATTA----TTTAACA-CTTGT
i dasNov3.JH567436         C 0 C 0
s zonAlb1.KB913084          1454813 30 +   4964275 ACTTAA-------------TTTCT-----TAGTCAGGT-A----TTTAATG-AT---
i zonAlb1.KB913084         I 2549 C 0
s taeGut2.chr3             14015391 36 - 112617285 CCATCA-------------TGTCCACTTGTAATACCAT-A----TTTCATATAT---
i taeGut2.chr3             I 6 C 0

a score=16111.000000
s hg38.chr8_KI270814v1_alt    11698 2 +    141812 GT
s panTro4.chr8             54952706 2 + 143986469 AT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58990962 2 + 153482349 AT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48082611 2 + 100215132 AT
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61632561 2 + 150158102 AT
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58305365 2 + 146850525 AT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53231829 2 + 139301422 AT
i chlSab2.chr8             C 0 C 0
s otoGar3.GL873541         21545914 2 -  23169006 GT
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4217809 2 -   9676502 AT
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907         11147068 2 +  17242564 AT
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84377447 2 +  91571448 AT
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7116154 2 -  14545593 AT
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19642425 2 -  23789964 GT
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20      28043381 2 -  46401353 AT
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10392104 2 +  24341844 AT
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436          1558625 2 -   2788317 AT
i dasNov3.JH567436         C 0 C 0
s zonAlb1.KB913084          1454843 2 +   4964275 GC
i zonAlb1.KB913084         C 0 I 1
s taeGut2.chr3             14015427 2 - 112617285 GC
i taeGut2.chr3             C 0 C 0
e calJac3.chrUn_GL286234       5162 199 +    110629 I
e saiBol1.JH378179          2743814 203 +  10880647 I

a score=882056.000000
s hg38.chr8_KI270814v1_alt    11700 114 +    141812 GTATGCTTT-AGTCTTCTGATCCATATCT--GGATAA---TTTACCTCTAATCTATAGTCTACTTTAGAATTCAGTGCTTTT----------------TC---C---TAGTCTG-----------------TATTTTCATGTACGTTTTGAGA-TTTTT------G
s panTro4.chr8             54952708 114 + 143986469 GTATGCTTT-ATTCTTCTGATCCATATCT--GGATAA---TTTACCTCTAATCTATAGTCTACTTTAGAATTCAGTGCTTTT----------------TC---C---TAGTCTG-----------------TATTTTCATGTAAGTTTTGAGA-TTTTT------G
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58990964 114 + 153482349 GTATGCTTT-ATTCTTCTGATCCATATCT--GGATAA---TTTACCTCTAATCTATAGTCTACTTTAGAATTCAGTGGTTTT----------------TC---C---TAGTCTG-----------------TATTTTCATGTAAGTTTTGAGA-TTTTT------G
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48082613 115 + 100215132 GTATGCTTT-ATTCTTCTGATCCACATCT--GGATAA---TTTACCTCTAACCTATAGTCTACTTTAGAATTCGGTGCTTTT----------------TC---C---TAGTCTG-----------------TATTTTCATGTAAGTTTTGAGATTTTTT------G
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61632563 114 + 150158102 GTATGCTTT-ATTCTTCTGAGCCATATCT--GGATAA---TTTACCTCTAATCTATAGTCTACTTTAGAATTCAGTACTTTT----------------TC---C---TAGTCTG-----------------TATTTTCATATAAGTTTTGAGA-TTTTT------G
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58305367 114 + 146850525 GTATGCTTT-ATTCTTCTGAGCCATATCT--GGATAA---TTTACCTCTAATCTATAGTCTACTTTAGAATTCAGTACTTTT----------------TC---C---TAGTCTG-----------------TATTTTCATATAAGTTTTGAGA-TTTTT------G
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53231831 114 + 139301422 GTATGCTTT-ATTCTTCTGATCCATATCT--GGATAA---TTTACCTCTAATCTATAGTCTACTTTAGAATTCAGTACTTTT----------------TC---C---TAGTCTG-----------------TATTTTCATGTAAGTTTTGAGA-TTTTT------G
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       5361 113 +    110629 GTGAGCTTT-ATTCTTGTGATCCATATCT--GGATAA----TTACCTCTAATCTGTAGTCTACTTTAGATTTCAGTGCATTT----------------TC---C---TAGTCTG-----------------TGTTTTCATGTAAGTGTTGAGA-TTTTT------G
i calJac3.chrUn_GL286234   I 199 C 0
s saiBol1.JH378179          2744017 113 +  10880647 gtgagcTTT-ATTCCTGTGATCCATATCT--GGATAA----TTACCTCTAATCTGTAGTCTGCTTTAGATTTCAGTGCATTT----------------TC---C---TAGTCTG-----------------TATTTTCATGTAAGTGTTGAGA-TTTTT------G
i saiBol1.JH378179         I 203 C 0
s otoGar3.GL873541         21545916 113 -  23169006 GTATGCTTT-ATTACTCTGATCCGTAT-T--AGTTAA---TTTATATTTAATACTTAATCTATTTTAGAAATCAGTGCTTTT----------------TC---T---TGGATTA-----------------TAGTTTCATATAATTTCTGAAA-TTTTT------G
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4217811 116 -   9676502 ACAGGCTGT-ATTATTCTGGTCCATAT-T--AGGTAA---TTTACTTGTGAAACTTAACTTATTCTAATATTCAGTGTTTTT----------------TT---TTAATAGCCAA-----------------TATTTTCAAATAAACTTTAAAA-ATTTT------G
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907         11147070 146 +  17242564 GTATGCTGT-TTTATTCTGATCCATAATT--AGATAA---CTTACCATTAAAATTTAATTTATTCTAGAATTCAGTGCTTTTTAATTTACCAGTAAAATT-------TAATTTATTCTAGAATTCAAAGCTTATTTTCATATAAGCTTTGAAG-TTTTT------G
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84377449 113 +  91571448 GTATGCTGT-ATTATTTTGATCCATATCT--AGATGA---TTTACCTTTAAAACTTAATCTGTTTTAGAATTCAGTGCTTTT----------------TC-------TAGTCTG-----------------TATTTTCATATATGCTTTGAAA-TTTTT------G
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7116156 113 -  14545593 ATATGCTGT-ATTATTCTGAACAATATCT--AGATAA---TTTATCTTTAAAACTTAATCTATTTTAGAATTCAGTGCTTTT----------------TC-------TAGTCTG-----------------TATTTTCATATAAGCCTGGAAA-TTTTT------G
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19642427 109 -  23789964 ATATGTTGT-ATTGTTCTGATCCATATCT--A----A---TTTACCTTTAAGACTTAATCTATTCTAGAACTCAATGCTCTT----------------TC-------TAGTTTA-----------------TATTTTCAGTTAAGCTTTGAAA-TTTTT------G
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20      28043383 113 -  46401353 GTATACTGT-ATTATTCTGGTACATATGT--AGATAA---TTTCCCTTTAAAATTTAAGCCACTCTAGAATTCATTGTTTTA----------------CA-------TAGTCTG-----------------TGTTTTCATATCATCTTTGACT-TTTTT------G
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10392106 119 +  24341844 GTATACTGT-ATTATTCTGATACATATGT--AGATAA---TTTGCCTTTAAAATTTAAGCCATTCTGGAATTCAGTGTTTTG----------------TA-------TAGTCTG-----------------TATTTTCATATCAGCTTTGACT-TTCTTTGAGGAA
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436          1558627 113 -   2788317 GTATACTGC-ATTATTCTGATATATATCT--AGATAA---TTTACCTTTAAAACTTTATCTGTCCCAGAAATCAGTGCTTTA----------------TG-------TAGTCTG-----------------CATTTTCATTTAAGCTTTGAAA-TTTTT------G
i dasNov3.JH567436         C 0 C 0
s zonAlb1.KB913084          1454846 115 +   4964275 GAATGTTGTGATTTTTCTGATACTTACCTCGAAATCAGACTTGTACTCTGAA--------GACTCTGGATGGAAACACTGAC----------------TAGCAC---CGGGCAG-----------------TGATTTTCTGTATGTTGGAAAT-TTTAT------G
i zonAlb1.KB913084         I 1 C 0
s taeGut2.chr3             14015429 105 - 112617285 -GATGTCATCATCTGTGTCATCATCATCT---AATCA---CTGTCTTCTGGCT-----TTGATATTGAGTGTTTCTATCTAG----------------TGGTAC---GTGTCAT-----------------TA--TTTCTATA----AAAAGC-TTTTT------G
i taeGut2.chr3             C 0 N 0

a score=35349.000000
s hg38.chr8_KI270814v1_alt    11814 11 +    141812 AGG-A-------------------AAA---A-AAT
s panTro4.chr8             54952822 11 + 143986469 GGG-A-------------------AAA---A-AAT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58991078 11 + 153482349 AGG-A-------------------AAA---A-AAT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48082728 11 + 100215132 AGG-A-------------------AAA---A-AAT
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61632677 11 + 150158102 AGG-A-------------------AAA---A-AAT
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58305481 11 + 146850525 AGG-A-------------------AAA---A-AAT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53231945 11 + 139301422 AGG-A-------------------AAA---A-AAT
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       5474 11 +    110629 AGT-A-------------------AAA---A-TGT
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2744130 11 +  10880647 AGT-A-------------------AAA---A-TGT
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21546029 10 -  23169006 AAG-A-------------------AAA---A--AT
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4217927 12 -   9676502 AGG-A-------------------AAA---ATAAT
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907         11147216 12 +  17242564 AGGAA-------------------AAA---A-AAT
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84377562 11 +  91571448 AGG-G-------------------AAA---A-AAT
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7116269 12 -  14545593 AGGAA-------------------AAA---A-AAT
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19642536 11 -  23789964 AGG-A-------------------AAA---C-AAT
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20      28043496 33 -  46401353 AGG-AAATGTAAGATTTCTTTTACaaatata-aaa
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10392225 33 +  24341844 AGG-AAATATAAGATTTCttttataaatata-aaa
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436          1558740 14 -   2788317 AAA-A-------------------AAAAAGC-AAT
i dasNov3.JH567436         C 0 C 0
s zonAlb1.KB913084          1454961 11 +   4964275 ATA-A-------------------CAA---A-AAT
i zonAlb1.KB913084         C 0 N 0

a score=233172.000000
s hg38.chr8_KI270814v1_alt    11825 34 +    141812 TGAACAAT-TTAGGT-----ATTAGAGACAA--AGAAA-AGAG
s panTro4.chr8             54952833 34 + 143986469 TGAACAAT-CTAGGT-----ATTAGAGACAA--AGAAA-AGAG
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58991089 34 + 153482349 TGAACAAT-TTAGGT-----ATTAGAGACAA--AGAAA-AGAG
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48082739 34 + 100215132 TGAACAAT-TTAGGT-----ATTACAGACAA--AGAAA-AGAG
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61632688 34 + 150158102 TGAACAAT-TTAGGT-----ATTAGAGACAA--AGAAA-AGAG
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58305492 34 + 146850525 TGAACAAT-TTAGGT-----ATTAGAGACAA--AGAAA-AGAG
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53231956 34 + 139301422 TGAACAAT-TTAGGT-----ATTAGAGACAA--AGAAA-AGAG
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       5485 38 +    110629 TGAACAAT-TTACATTCAACTTTTGagacaa--agaaa-aga-
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2744141 38 +  10880647 TGAACAAT-TTATGTTCGACTTTTGagacaa--agaaa-aga-
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21546039 30 -  23169006 TGAAAAAT-TTAAAT-----AATAGAGAC------AAA-AGAA
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4217939 33 -   9676502 TGAAAAGT-TTAGGT-----GATAAAGACTA--AGGAA-AAA-
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907         11147228 37 +  17242564 TGAAAACC-TTAAGT-----GTTAGAGGCAAGAAGAAAAAGAG
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84377573 36 +  91571448 TGAAAACC-TTAAGT-----GATAGAGACAAAAAGAAA-AGAG
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7116281 37 -  14545593 TGAAAACCTTTAAGT-----GATAGAGACAAAAAGAAA-AGAG
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19642547 34 -  23789964 CGAAAACC-TTAGGT-----GATAGAGACAAAGAGAAA---AG
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20      28043529 34 -  46401353 ttaaaaat-ttaGGT-----GATAGAGACAA--AGAAA-AGAG
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10392258 34 +  24341844 ttaaaaat-ttCTGT-----GATAGAGACAA--AGAAA-AGAG
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436          1558754 34 -   2788317 CTAAAAGT-TGAAGT-----GATAGCGACAA--AGAAA-AGAA
i dasNov3.JH567436         C 0 I 5

a score=9555.000000
s hg38.chr8_KI270814v1_alt    11859 1 +    141812 T
s panTro4.chr8             54952867 1 + 143986469 T
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58991123 1 + 153482349 T
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48082773 1 + 100215132 T
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61632722 1 + 150158102 T
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58305526 1 + 146850525 T
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53231990 1 + 139301422 T
i chlSab2.chr8             C 0 C 0
s otoGar3.GL873541         21546069 1 -  23169006 T
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4217972 1 -   9676502 T
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907         11147265 1 +  17242564 T
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84377609 1 +  91571448 T
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7116318 1 -  14545593 T
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19642581 1 -  23789964 T
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20      28043563 1 -  46401353 T
i loxAfr3.scaffold_20      C 0 I 8
s dasNov3.JH567436          1558793 1 -   2788317 T
i dasNov3.JH567436         I 5 C 0
e calJac3.chrUn_GL286234       5523 0 +    110629 C
e triMan1.JH594629         10392292 0 +  24341844 C
e saiBol1.JH378179          2744179 0 +  10880647 C

a score=17678.000000
s hg38.chr8_KI270814v1_alt    11860 4 +    141812 -ATTT
s panTro4.chr8             54952868 4 + 143986469 -ATTT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58991124 4 + 153482349 -ATTT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48082774 4 + 100215132 -ATTT
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61632723 4 + 150158102 -ATTT
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58305527 4 + 146850525 -ATTT
i macFas5.chr8             C 0 I 529
s chlSab2.chr8             53231991 4 + 139301422 -ATTT
i chlSab2.chr8             C 0 C 0
s otoGar3.GL873541         21546070 4 -  23169006 -ATTT
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4217973 4 -   9676502 -ATTT
i speTri2.JH393342         C 0 I 1
s orcOrc1.KB316907         11147266 4 +  17242564 -ATTT
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84377610 4 +  91571448 -GTTT
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7116319 4 -  14545593 -ATTT
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19642582 4 -  23789964 -TTCG
i pteAle1.KB030580         C 0 C 0
s dasNov3.JH567436          1558794 4 -   2788317 AATT-
i dasNov3.JH567436         C 0 C 0
e calJac3.chrUn_GL286234       5523 0 +    110629 C
e triMan1.JH594629         10392292 0 +  24341844 C
e loxAfr3.scaffold_20      28043564 8 -  46401353 I
e saiBol1.JH378179          2744179 0 +  10880647 C

a score=46483.000000
s hg38.chr8_KI270814v1_alt    11864 10 +    141812 -----AGGAATAGAA---
s panTro4.chr8             54952872 10 + 143986469 -----AGGAATAGAA---
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58991128 10 + 153482349 -----AGGAATAGAA---
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48082778 10 + 100215132 -----AGGAATAGAA---
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61632727 10 + 150158102 -----AGGAATAGAG---
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58306060 10 + 146850525 -----AGGAATAGAG---
i macFas5.chr8             I 529 C 0
s chlSab2.chr8             53231995 10 + 139301422 -----AGGAACAGAG---
i chlSab2.chr8             C 0 C 0
s otoGar3.GL873541         21546074 10 -  23169006 -----AGGGATACAG---
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4217978 10 -   9676502 -----GGGAACAGAG---
i speTri2.JH393342         I 1 C 0
s orcOrc1.KB316907         11147270 10 +  17242564 -----AGGGATAGAA---
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84377614 10 +  91571448 -----AGGGATAGAA---
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7116323 10 -  14545593 -----AGGGAGAGAA---
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19642586 10 -  23789964 -----AGGGTTAGAA---
i pteAle1.KB030580         C 0 C 0
s dasNov3.JH567436          1558798 18 -   2788317 AATATAGGGAGAATGCAA
i dasNov3.JH567436         C 0 C 0
e calJac3.chrUn_GL286234       5523  0 +    110629 C
e triMan1.JH594629         10392292  0 +  24341844 C
e loxAfr3.scaffold_20      28043564  8 -  46401353 I
e saiBol1.JH378179          2744179  0 +  10880647 C

a score=19329.000000
s hg38.chr8_KI270814v1_alt    11874 4 +    141812 TATC
s panTro4.chr8             54952882 4 + 143986469 TATC
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58991138 4 + 153482349 TATC
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48082788 4 + 100215132 TATC
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61632737 4 + 150158102 Tatc
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58306070 4 + 146850525 TATC
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53232005 4 + 139301422 TATC
i chlSab2.chr8             C 0 C 0
s otoGar3.GL873541         21546084 4 -  23169006 TATC
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4217988 4 -   9676502 TATT
i speTri2.JH393342         C 0 C 0
s equCab2.chr15            84377624 4 +  91571448 TGTC
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7116333 4 -  14545593 TGTC
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19642596 4 -  23789964 TGTT
i pteAle1.KB030580         C 0 C 0
s dasNov3.JH567436          1558816 4 -   2788317 TTTT
i dasNov3.JH567436         C 0 I 2
e calJac3.chrUn_GL286234       5523 0 +    110629 C
e triMan1.JH594629         10392292 0 +  24341844 C
e loxAfr3.scaffold_20      28043564 8 -  46401353 I
e orcOrc1.KB316907         11147280 0 +  17242564 C
e saiBol1.JH378179          2744179 0 +  10880647 C

a score=5500.000000
s hg38.chr8_KI270814v1_alt    11878 1 +    141812 C
s panTro4.chr8             54952886 1 + 143986469 C
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58991142 1 + 153482349 C
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48082792 1 + 100215132 C
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61632741 1 + 150158102 c
i rheMac3.chr8             C 0 I 430
s macFas5.chr8             58306074 1 + 146850525 C
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53232009 1 + 139301422 C
i chlSab2.chr8             C 0 C 0
s otoGar3.GL873541         21546088 1 -  23169006 C
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4217992 1 -   9676502 C
i speTri2.JH393342         C 0 I 1
s equCab2.chr15            84377628 1 +  91571448 C
i equCab2.chr15            C 0 C 0
s dasNov3.JH567436          1558822 1 -   2788317 C
i dasNov3.JH567436         I 2 C 0
e calJac3.chrUn_GL286234       5523 0 +    110629 C
e triMan1.JH594629         10392292 0 +  24341844 C
e loxAfr3.scaffold_20      28043564 8 -  46401353 I
e pteAle1.KB030580         19642600 0 -  23789964 C
e cerSim1.JH767782          7116337 0 -  14545593 C
e orcOrc1.KB316907         11147280 0 +  17242564 C
e saiBol1.JH378179          2744179 0 +  10880647 C

a score=63895.000000
s hg38.chr8_KI270814v1_alt    11879 83 +    141812 TATAtgcc-------ttag-----tttgagctgccttaacaaaatatcataaactgtgtg---tctgagaaactaaagaaatttgtctttcc--------cagttt
s panTro4.chr8             54952887 83 + 143986469 TATAtgcc-------ttag-----tttgagctgccataacaaaatatcataaactgtgtg---tctgagaaactaaagaaatttgtctttcc--------cagttt
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58991143 83 + 153482349 TATATGCC-------TTAg-----tttgagctgccttaacaaaatatcataaactgtgtg---tctgagaaactacagaaatttgtctttcc--------cagttt
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48082793 79 + 100215132 TATATGCC-------TTAg-----tttgagctgccataacaaaatatcataaactacg-------tgagaaactacagaaatttgtctttcc--------cagttt
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61633172 83 + 150158102 TATAtgca-------ttag-----tttgagctgccgtaacaaaatatcataaactgtgtg---tctgagaaacaacagaaatttatctttcg--------ccattt
i rheMac3.chr8             I 430 C 0
s macFas5.chr8             58306075 83 + 146850525 TATATGCA-------TTAg-----tttgagctgccgtaacaaaatatcataaactgtgtg---tctgagaaacaacagaaatttatctttcg--------ccattt
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53232010 82 + 139301422 TATATGTG-------TTAg-----tttgagctgccgtaacaaaatatcataaactgtgtg---tctgagaaacaacagaaattta-cttttg--------ccattt
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       5523 14 +    110629 ------------------------------------------------------------------------------------atctttcc--------cagttc
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2744179 14 +  10880647 ------------------------------------------------------------------------------------atctttcc--------cagttc
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21546089 84 -  23169006 CATACgtc-------ttagtc-ctttggggccattataccaaaataccatgaactgggtg------gataaacagcagtaatttatttctct--------gagttt
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4217994 78 -   9676502 TACATATCTTAttagttag-----tttgggcttttgtgacatagtaccacaaact-----------gataaaaaatggaaatt----tctct--------cagttc
i speTri2.JH393342         I 1 C 0
s equCab2.chr15            84377629 15 +  91571448 --TATATA-------TTAG-----------------------GATAT-----------------------------------------------------------
i equCab2.chr15            C 0 C 0
s dasNov3.JH567436          1558823 99 -   2788317 CAGATTCT-------CTAGCAGCCCGACATCTCCTATAGcagggtttggcaaactatgtaaaattccagatagtaaatattttaggctttgcaggacatacagttt
i dasNov3.JH567436         C 0 I 595
e triMan1.JH594629         10392292  0 +  24341844 C
e loxAfr3.scaffold_20      28043564  8 -  46401353 I
e pteAle1.KB030580         19642600  0 -  23789964 C
e cerSim1.JH767782          7116337  0 -  14545593 C
e orcOrc1.KB316907         11147280  0 +  17242564 C

a score=892381.000000
s hg38.chr8_KI270814v1_alt    11962 268 +    141812 gggagtgtggaccctccaagatcaaagtgctgagcaatttggtgtccggcaaaggcctgcttcttttttcatagtca-cca---tcttct-ttttaacctcacatggtagaaggggcagaatag--ctctgggtgtcttctc-taagggcactaattccactcgtgagggttctgccctcatgacctaatcacctccaaaaggactcacctccaggtatcctcatattggggattaggtttca--aatat----aaattttaag--ggaacacaaacactcTGT
s panTro4.chr8             54952970 268 + 143986469 gggagtgtggaccctccaagatcaaagtgctgagcaatttggtgtccggcaaaggcctgcttctttttacatagtca-cca---tcttct-ctttaacctcacatggtagaaggggcagaatag--ctctgggtgtcttctc-taagggcactaattccactcgtgagggttctgccctcatgacctaatcacctccaaaaggactcacctccaggtatcctcatattggggattaggtttca--aatat----aaattttaag--ggaacacaaacactcTGT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58991226 268 + 153482349 gggagtgtggacccgccaagatcaaagtgctgagcaatttggtgtccggcaaaggcctgcttcttttttcatagtca-ctg---tctttt-ctttaacctcacatagtagaaggggcagaacag--ctctgggtgtcttctc-taagggcactaattccactcgtgagggttctgccctcatgaactaatcacctccaaaaggactcacctccaggtatcctcatattggggattaggtttca--aatac----aaattttaag--ggaacacaaacactcTGT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48082872 268 + 100215132 gggagtgtggaccctccaagatcaaagtgctgagcaatttggtgtctggcaaaggcctgcttctttcttcatagtca-ctg---tcttct-ctttgacctcacatggtagaaggcgcacaacag--ctctgggtgtcttctc-taagggcactaattccacttgtgagggttctgccctcatgacctaatcacctccaaaaggactcacctccaggtatcctcatattggggattaggtttca--aatat----aaattttaag--ggaatgcaaacactcTGT
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61633255 268 + 150158102 gggagtgtggaccctccaagatgaatgtgctgagcaatttgttatctggcaaaggtctgcttcttttttcatagtca-ctg---tcttct-ctttaacctcacgtggtagaaggggcagaagag--ctctgggtgtcttctc-taagggcactaattccactcgtgagggttctgccctcatgacctactcacctccaaaaggactcacctccaggtatcctcatattggggattaggtttca--aatat----aaatttcaag--gaaacacaaatactcTGT
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58306158 268 + 146850525 gggagtgtggaccctccaagatgaaggtgctgagcaatttgttatctggcaaaggcctgcttcttttttcatagtca-ctg---tcttct-ctttaacctcatgtggtagaaggggcagaagaa--ctctgggtgtcttctc-taagggcactaattccactcgtgagggttctgccctcatgacctactcacctccaaaaggactcacctccaggtatcctcatattggggattaggtttca--aatat----aaatttcaag--gaaacacaaatactcTGT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53232092 268 + 139301422 gggagtgtggaccctccaagatgaaggtgctgagcaatttgttatctggcaaaggcccgcttcttttttcatagtca-ctg---tcttct-ctttaacctcacatggtagaaggggcagaagag--ctccgggtgtcttctc-taagggcactaattccactcgtgagggttctgccctcatgacctactcacctccaaaaggactcacctccaggtatcctcatattggggattaggtttca--aatat----aaatttcaag--ggaacacaaatactcTGT
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       5537 269 +    110629 tggagtctggactctccaagatcaagttgctgacagacttggtgtctggcaaaggcttgcttcttggttcatagtcacctg---tcttct-ctctaatctcacaagctagagggggaaggagaa--ccctgggtgtcttctg-tcaggccactaattccactcatgtgggctctaccttcatgacctaatcgtctccaaaaggactcacctccaggtatcctcatattggggattaggtttca--aatat----aaattttaag--ggaacacaaacactctat
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2744193 269 +  10880647 tggaatctggaccctccaagatcaagttgctgacagacttggtgtctggcaaagacctgtttctttgttcatagtcacctg---tcttct-ctctaatcttacatgatagaaggagaaggagaa--ccctgggtgtcttctg-taaggccactaattccactcatgtgggttctgtcttcatgacctaatcacctccaaaaggactcacctccaggtatcctcatactggggattaggtttca--aatat----aaattttaag--ggaacacaaacactcTAT
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21546173 254 -  23169006 -ggaggctgggccgtccaagatcaggctgct-atagacatggtgtctggtgagggcttgcgtcctggttcatagtcagcgg---tgttctcccctgacctcacatgctaggagaggcaagagag--ctctctggttctcttcataaggatgctaatcctattcatggggattctgc-------aactggtcatcttcaaa--ggcctacctctaaacatcctcaca-----gattaggtttcagcatcat----aa---ttggg--gggaggggaacagtctat
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4218072 267 -   9676502 tggaggctgagcagtctaagatcag---gctcacagatttg--gtctggtgcaggctggcttc-tgactcatagtta-ttgagattctct-ttgtaacctcacttggtagaaggagcaagagagttttctaggtctcttctc-tatgggcatcaatttca-tgatgaggatcctgccat-atgatccaatcacatcctcaagactccacctccagatagcctcacattgggaattaggtatca--agatt----gacatttaagcagtgatacaaacattcTGT
i speTri2.JH393342         C 0 C 0
s equCab2.chr15            84377644 134 +  91571448 ------------TCTCCTTAACTAATATAGGGAGAAGTTAA---------------------CTTTTACCATGTTTGCCCA---CCGTTT-CT---------------------GAGAGcaggg--tttggggaactgtctg-tgagg-----------------------------------------------------------------------------------gaccaggtagca--aatatgttagactttgcag--ggcatacag--cctctgt
i equCab2.chr15            C 0 C 0
e dasNov3.JH567436          1558922 595 -   2788317 I
e triMan1.JH594629         10392292   0 +  24341844 C
e loxAfr3.scaffold_20      28043564   8 -  46401353 I
e pteAle1.KB030580         19642600   0 -  23789964 C
e cerSim1.JH767782          7116337   0 -  14545593 C
e orcOrc1.KB316907         11147280   0 +  17242564 C

a score=11914.000000
s hg38.chr8_KI270814v1_alt    12230 4 +    141812 GGCA
s panTro4.chr8             54953238 4 + 143986469 GGCA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58991494 4 + 153482349 GGCA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48083140 4 + 100215132 GGCA
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61633523 4 + 150158102 AGCA
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58306426 4 + 146850525 AGCA
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53232360 4 + 139301422 AGCA
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       5806 4 +    110629 agca
i calJac3.chrUn_GL286234   C 0 C 0
s otoGar3.GL873541         21546427 4 -  23169006 agca
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4218339 4 -   9676502 AGTG
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907         11147280 4 +  17242564 GGTC
i orcOrc1.KB316907         C 0 C 0
e dasNov3.JH567436          1558922 595 -   2788317 I
e equCab2.chr15            84377778 0 +  91571448 C
e triMan1.JH594629         10392292 0 +  24341844 C
e loxAfr3.scaffold_20      28043564 8 -  46401353 I
e pteAle1.KB030580         19642600 0 -  23789964 C
e cerSim1.JH767782          7116337 0 -  14545593 C
e saiBol1.JH378179          2744462 0 +  10880647 C

a score=100044.000000
s hg38.chr8_KI270814v1_alt    12234 19 +    141812 CTATATATTAAGACATTAA
s panTro4.chr8             54953242 19 + 143986469 CTATATATTAAGACATTAA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58991498 19 + 153482349 CTATATATTAAGACATTAA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48083144 19 + 100215132 CTATATATTAAGACATTAA
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61633527 19 + 150158102 CTATATATTAGGACATTAA
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58306430 19 + 146850525 CTATATATTAGGACATTAA
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53232364 19 + 139301422 CTATATATTAGGACATTAA
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       5810 19 +    110629 CTAAATATTAGGGCATTAA
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2744462 15 +  10880647 ----GTATTAGGGCATTAA
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21546431 19 -  23169006 GTCTCTATAAGGATATTAA
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4218343 18 -   9676502 CTACACATT-GGATATTAA
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907         11147284 19 +  17242564 CTATATCTTAGGATATTGA
i orcOrc1.KB316907         C 0 C 0
s cerSim1.JH767782          7116337 17 -  14545593 CTATATATTAGAATATT--
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19642600 19 -  23789964 CTATCTATTAGGACATTAA
i pteAle1.KB030580         C 0 C 0
e dasNov3.JH567436          1558922 595 -   2788317 I
e equCab2.chr15            84377778  0 +  91571448 C
e triMan1.JH594629         10392292  0 +  24341844 C
e loxAfr3.scaffold_20      28043564  8 -  46401353 I

a score=56532.000000
s hg38.chr8_KI270814v1_alt    12253 10 +    141812 TGCTTCTTAA
s panTro4.chr8             54953261 10 + 143986469 TTCTTCTTAA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58991517 10 + 153482349 TTCTCCTTAA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48083163 10 + 100215132 TTCTCCTTAA
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61633546 10 + 150158102 TTCTCCTTAA
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58306449 10 + 146850525 TTCTCCTTAA
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53232383 10 + 139301422 TTCTCCTTAA
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       5829 10 +    110629 TTCTCCTTAA
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2744477 10 +  10880647 TTCTCCTTAA
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21546450  9 -  23169006 TGCTCCTTA-
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4218361 10 -   9676502 TTCTTCTTAA
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907         11147303 10 +  17242564 TTCTCCTTAA
i orcOrc1.KB316907         C 0 C 0
s cerSim1.JH767782          7116354  8 -  14545593 --CTCCTTAA
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19642619 10 -  23789964 TGCTCCTCAA
i pteAle1.KB030580         C 0 C 0
s triMan1.JH594629         10392292  9 +  24341844 TGATAGTCA-
i triMan1.JH594629         C 0 C 0
e dasNov3.JH567436          1558922 595 -   2788317 I
e equCab2.chr15            84377778  0 +  91571448 C
e loxAfr3.scaffold_20      28043564  8 -  46401353 I

a score=1124393.000000
s hg38.chr8_KI270814v1_alt    12263 283 +    141812 GTAACAAAGCAGGAATTTAACTCTCACCATA-TTC-------ACCCAGCATTTCTGAGAGC-A-ggtttggcaaactatctttgtaaagaacc----agatactga--act-----gttagccttgcaggacatgcagtctgtgtcg---ctgttcc-----ggtctgctgtcatagtgcaaatgtatatatacacaatatgtaagc----aaaggagcatggctgtgtttcaggaaaactttgtttacaaaaaccgaagg-----------tggattggatttg-gcAAATCTGTATTATAAGTAGACTCCTGCCACAGGGATTTTT
s panTro4.chr8             54953271 283 + 143986469 GTAACAAAGCAGGAATTTAACTCTCACCATA-TTC-------ACCCAGCATTTCTGAGAGG-A-ggtttggcaaactatctttgtaaagaacc----agatactga--act-----gttagccttgcaggacatgcagtctgtgtca---ctgttcc-----ggtctgctgtcatagtgcaaatgtatatatatacaatatgtaagc----aaaggagcatggctgtgtttcaggaaaactttgtttacaaaaaccgaagg-----------tggattggatttg-gcAAATCTGTATTATAAGTAGACTCCTGCCACAGGGATTTTT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58991527 283 + 153482349 GTAACAAAGCAGGAATTTAACTCTCACCATA-TTC-------ACCCAGCATTTCTGAGAGC-A-ggtttggcaaactatctttgtaaagaacc----agatactga--act-----gttagccttgcaggacatgcagtctgtgtcg---ctgttcc-----agtctgctgtcatagtgcaactgtatatatacacaatatgtaagt----aaaggagcatggctgtgtttcaggaaaactttgtttacaaaaaccgaagg-----------tggattggatttg-gcAAATCTGTATTCTAAGTAGACTCCTGCCACAGGGATTTTT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48083173 283 + 100215132 GTAACAAAGCAGGAATGTAACTCTCACCATA-TTC-------ACCCAGCATTTCTGAGAGC-A-ggtttggcaaactatctttgtaaagaacc----agatactga--act-----gttagccttgcaggacctgcagtctgtgtcg---ctattcc-----agtctgctgtcatagtgcaaatgtatctatacacaatatgcaagc----aaaggagcatggctgtgtttcaggaaaactttgtttacaaaaaccgaagg-----------tggattggatttg-gcAAATCTGTATTCTAAGTAGACTCCTGCCACAGGGATTTTT
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61633556 262 + 150158102 GTAACAAAGCAGGAATTTAAGTC-----------------------------TTTGAGAGC-A-AGTGTggcaaactgtctttgtaaagaacc----agatactga--act-----gttagccttgcaggacatgcagcctgtgttg---ctattcc-----tgtctgctgtcatagtgcaaatgtatctatacacaatatgtaagc----aaaggagcatggctgtgcttcaggaaaactttgtttacaaaaaccgaagg-----------ttgtttggatttg-gcAAATCTGTATTCTAAGCAGACTCCTGCCACAGCGATTTTA
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58306459 262 + 146850525 GTAACAAAGCAGGAATTTAAGTC-----------------------------TTTGAGAGC-A-AGTGTggcaaactgtctttgtaaagaacc----agatactga--act-----gttagccttgcaggacatgcagcctgtgttg---ctattcc-----tgtctgctgtcatagtgcaaatgtatctatacacaatatgtaagc----aaaggagcatggctgtgcttcaggaaaactttgtttacaaaaaccgaagg-----------ttgtttggatttg-gcAAATCTGTATTCTAAGCAGACTCCTGCCACAGCGATTTTA
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53232393 262 + 139301422 GTAACAAAGCAGGAATTTAACTC-----------------------------TTTGAGAGC-A-ggtttggcaaactatctttgtaaagaacc----ggatactga--act-----gttagccttgcaggacatgcagcctgtgttg---ctgttcc-----cgtctgctgtcagagtgcaaatgtatctatacacaatatgtaagc----aaaggagcatggctgtgcttcaggaaaactttgtttacaaaaactgaagg-----------tggtttggatttg-gcAAATCTGTATTCTAAGCGGACTCCTGCCACAGTGATTTTA
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       5839 287 +    110629 GTAACAAAGCAGGAATTTAACTCTCACCAAA-TTC-------AGCCAGCATTTCTGAGAGC-A-GATttggcaaactatgtttgtaaagaaccagatagatactaa--act-----gttagctttgcaggacatgcagcctgtgttg---ctgttcc-----aatatgctgttgtagtgcaaatgtatccatacacaatatgtaagc----aaaggatcatggctgtgattcaggaaaattttatttacaaaaacaggtgg-----------tggattggatttg-gccaaactgtattctaagcagactcctgCCATAGGGATTTTT
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2744487 287 +  10880647 GTGACAAAGCAGGACTTTAACTCTCACCAAA-TTC-------AGCCAGCATTTCTGAGAGC-A-ggtttggcaaactatatttgtaaagaaccagatagatactaa--act-----gttagcttcgcgggacatgcagcctgtgttg---ctgttct-----ggtatgccgttgtagtgcaaatgtatccatacacaatacgtcagc----aaaggatcatggctgtgattcaggaaaattttatttacaaaaacaggtgg-----------tggattggatttg-gccAAACTAGGTTCTAAGCAGACTCCTGCCATAGGGATTTTA
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21546459 233 -  23169006 ---GCATGGAAGTAATTCACCTT-CACCAAATTTT-------ACCTAGCATTTCGGAGAGC-AGGGTTTGGC------------------------------------GTt-----tttaactatgcaaggcatacagcttctgtcc---ctgtttc-----actctgctgtcacagggcaaaggcaattgtagaccata-gtgaac-----gggtaacacagctgtgcttcagtagaactata-ttacaaagataagtgg-----------tagactgggtttg-gccAACCTTTA-TCTAAGCAGACTC--------------TTT
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4218371 212 -   9676502 TTTAAGA-----GAGTGCAATGTTTGCCTGA--------------------TTCATAcagc-a-ga-------------ctttgtaaaggacc----aaatagtga--actttggctttaggcttgtaaaacatata-------------------c-----actctactgttatagatcaaagacagccac------------aac----aaatgagcatggctatgcttcagttatgttttatttacaaaag-aggttg-----------tgagttgaatttgTTCAAACATGAAAACTAAG------------------ATTTTT
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907         11147313 262 +  17242564 TTAGTCCGGGGAGGATTTAACTTTCA-CAGA-TTT-------GACCAGCGTTTCTGAGAGcaa-gggttggcaaactgtc--tgtaaaggacc----agatagcaagtatt-----ttagactctgcaggacacacagcctctgtca---cggctcttctcagttctgtcgttgt---gcacaa--agccag------tatgtgaac----aacgaacttgacctgtgcttccatcagacttccttcaccaaaaaagtggg-----------tggac----------------cATATCCTAAGCACACTCCTGCCACAGGGATTTGA
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84377778 160 +  91571448 ---------------------------caca-gcc-------actcggctctc----------------------------------------------------------------------ttgct---------------------------------------------gtaatgcaccagtagccgtggac--agcatgaac----cagtgagcatgtctgtgcttccatcagtctttatttacagaaacaggtgg-----------tggactgtgtttg-gccAACCCGTATACTAAGCAGACTCCTGCCCTGGGGTTTGTA
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7116362 283 -  14545593 TTAATGTTGGGAGAAGTTAACTTTTACCATA-TTT-------GCCCAGCATTC-TGAGAGC-A-ggtttggcaaactgtc--cataaaggacg----agagagcaaatatg-----tcagactttgcaggacacacagcctctgtca---cagccat--gcagctctgttgctgtaacgcacagtaagccatggac--aatatgaac----aagtgagcgtgtctgtgcttccatcagactttatctacaaaaacaggtgg-----------tggactatgtttg-gccACCCCGTATCCTAAGCAGACTCATGCCACAGGGATTTTA
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19642629 279 -  23789964 CTAACAGAGGGAGAACTTAACTTTTGCTAGA-TCT-------GCCCAGCATTTCCAAGAGTGA-ggtttggcagactgtc--tgcagaggacc----agatagcaagcatt-----ctcggctttgcaggacaggcagcctctgtcg---cagctct--tcggctctgtcattgtcctgcaaaagca-ccgtagacgagacgtgaac----cactcagctcagccgcgctcccgtgagac------CGCAGCAATGGGCAG-----------TGGACTGTGCTCA-GCCAACAAGTGCTCTCAGCACGCTCCTG-CACAGAGATCTTA
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20      28043572 302 -  46401353 TTCATAGAGGGAGAATTCAACTTTCACTGGA-TTCTCTAACAGCCCAGCATCTCCTAGGGc-atggtttggcaaac------tagaaagagtg----aagtagtat--gtt-----ctagattttgtaggatatacagcctctgttgtaactactca-----attctgctttcgtagtctaaaagcagccatagaccctatgtaaatagacaaacgagcatggttgtataccagtaaaactttatttacaaaaacaggctggatttggctcatgggccatagttt-gtcaacccc-ATACTAAGCAAACTCCTGCCACAGGGATTTTG
i loxAfr3.scaffold_20      I 8 I 1
s triMan1.JH594629         10392301 296 +  24341844 TTCATAAAGGGAGAATTCAATTTTCACCAGG-TTCTCTAACAGCCCAGCATCT-CTGGAGc-agggtttagcaaac------tataaagagcc----aaatagtat--gtt-----ttaggctttgtaggatataca-cctctgtcataactactca-----actctgctgttgtagtctgaaagcagccataggccgtatgtaaat----aaatgagcatggttgtactccaataaaactttatttataaaaacaggctggatttggctcatgggccatagttt-gtcaacccA-ATACTAAGCAAGCTCCTGCTGCAGGGATTTTG
i triMan1.JH594629         C 0 I 1
e dasNov3.JH567436          1558922 595 -   2788317 I

a score=113141.000000
s hg38.chr8_KI270814v1_alt    12546 32 +    141812 AAAAAGAGCAGGAGGC---AGACAGTCACTTTTCC
s panTro4.chr8             54953554 32 + 143986469 AAAAAGAGCAGGAGGC---AGACAGTCACTTTTCC
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58991810 32 + 153482349 CAAAAGAGCAGGAGGC---AGACAGTCACTTTTCC
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48083456 32 + 100215132 AAAAAGAGCAGGAGGC---AGACAGTCACTTTTTC
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61633818 32 + 150158102 AAAAAGAACAGGAGGC---AAACAGTCACTTTTCC
i rheMac3.chr8             C 0 I 289
s macFas5.chr8             58306721 32 + 146850525 AAAAAGAACAGGAGGC---AAACAGTCACTTTTCC
i macFas5.chr8             C 0 I 283
s chlSab2.chr8             53232655 32 + 139301422 AAAAAGAACAGGAGGC---AAACAGTCACTTTTCC
i chlSab2.chr8             C 0 I 294
s calJac3.chrUn_GL286234       6126 32 +    110629 AAAAAGAGCAGGAGAC---AGACGGTCACTTTTCC
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2744774 32 +  10880647 AAAAAGAGCAGGAGAC---AGACGGTCACTTTTCC
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21546692 29 -  23169006 TAAGAGAGCAGGTGGC---AGA--GACATTTTCC-
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4218583 27 -   9676502 ---AAGAGTGGGAAGC---AGAGAGACTCTTTA--
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907         11147575 31 +  17242564 AAGAAGAGAGGCAGGC---GGACACACACTCTTC-
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84377938 26 +  91571448 AA--AGAAAGGAAGGC---AGATGCTC---TTCT-
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7116645 28 -  14545593 AAAGAGAGAGGGAGGC---AGACGCTC---TTCC-
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19642908 17 -  23789964 ACAGGGGGAGGG-GGC---AG--------------
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20      28043875 23 -  46401353 AAAAGGA------------AAACAGATAGTCTTTT
i loxAfr3.scaffold_20      I 1 C 0
s triMan1.JH594629         10392598 30 +  24341844 AAAAAAAG-----GGAAGCAGACAGACACTCTTTT
i triMan1.JH594629         I 1 C 0
s dasNov3.JH567436          1559517 33 -   2788317 AAAAAGAGTGGGAGGCAGAAGACAGGT--CCTGCC
i dasNov3.JH567436         I 595 C 0

a score=44979.000000
s hg38.chr8_KI270814v1_alt    12578 10 +    141812 TACTAGCTTT
s panTro4.chr8             54953586 10 + 143986469 TACTAGCTTT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58991842 10 + 153482349 TACTAGCTTT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48083488 10 + 100215132 TACTAGCTTT
i nomLeu3.chr16            C 0 I 43
s calJac3.chrUn_GL286234       6158 10 +    110629 TACCAGCTTT
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2744806 10 +  10880647 TACCAGCTTT
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21546721 10 -  23169006 TATTAGCTTA
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4218610 10 -   9676502 TACCAACTTA
i speTri2.JH393342         C 0 I 1
s orcOrc1.KB316907         11147606 10 +  17242564 TGCTAGTTTC
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84377964 10 +  91571448 TGCTGGTTTC
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7116673 10 -  14545593 TACTGGTTTC
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19642925  7 -  23789964 ---TAGTTTC
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20      28043898 10 -  46401353 TGCTAGCCTC
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10392628  3 +  24341844 TAC-------
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436          1559550 10 -   2788317 TACTAGCTTC
i dasNov3.JH567436         C 0 C 0
e rheMac3.chr8             61633850 289 + 150158102 I
e macFas5.chr8             58306753 283 + 146850525 I
e chlSab2.chr8             53232687 294 + 139301422 I

a score=35521.000000
s hg38.chr8_KI270814v1_alt    12588  7 +    141812 AAAA-------ATA
s panTro4.chr8             54953596  7 + 143986469 AAAA-------ATA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58991852  7 + 153482349 AAAA-------ATA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48083541 14 + 100215132 AAAATATATATATA
i nomLeu3.chr16            I 43 C 0
s macFas5.chr8             58307036  7 + 146850525 aaaa-------aaG
i macFas5.chr8             I 283 C 0
s calJac3.chrUn_GL286234       6168  7 +    110629 AAAA-------ATG
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2744816  7 +  10880647 CAAA-------ATG
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21546731  7 -  23169006 AAAA-------ATG
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4218621  7 -   9676502 AAAA-------ATA
i speTri2.JH393342         I 1 I 5
s orcOrc1.KB316907         11147616  7 +  17242564 AAAA-------CTA
i orcOrc1.KB316907         C 0 I 5
s equCab2.chr15            84377974  7 +  91571448 AGAA-------ATA
i equCab2.chr15            C 0 I 5
s cerSim1.JH767782          7116683  7 -  14545593 AAAA-------ATA
i cerSim1.JH767782         C 0 I 5
s pteAle1.KB030580         19642932  7 -  23789964 AAAA-------ATA
i pteAle1.KB030580         C 0 I 5
s loxAfr3.scaffold_20      28043908  7 -  46401353 AAAA-------ATA
i loxAfr3.scaffold_20      C 0 C 0
s dasNov3.JH567436          1559560  8 -   2788317 AAAA------TGTA
i dasNov3.JH567436         C 0 C 0
e triMan1.JH594629         10392631  0 +  24341844 C
e rheMac3.chr8             61633850 289 + 150158102 I
e chlSab2.chr8             53232687 294 + 139301422 I

a score=2704.000000
s hg38.chr8_KI270814v1_alt    12595 2 +    141812 TA-----
s panTro4.chr8             54953603 2 + 143986469 TA-----
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58991859 2 + 153482349 TA-----
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48083555 2 + 100215132 TA-----
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61634139 2 + 150158102 TA-----
i rheMac3.chr8             I 289 C 0
s macFas5.chr8             58307043 2 + 146850525 TA-----
i macFas5.chr8             C 0 C 0
s calJac3.chrUn_GL286234       6175 2 +    110629 TA-----
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2744823 2 +  10880647 TA-----
i saiBol1.JH378179         C 0 C 0
s speTri2.JH393342          4218633 2 -   9676502 TA-----
i speTri2.JH393342         I 5 C 0
s orcOrc1.KB316907         11147628 2 +  17242564 TA-----
i orcOrc1.KB316907         I 5 C 0
s equCab2.chr15            84377986 2 +  91571448 TA-----
i equCab2.chr15            I 5 C 0
s cerSim1.JH767782          7116695 2 -  14545593 TA-----
i cerSim1.JH767782         I 5 C 0
s pteAle1.KB030580         19642944 2 -  23789964 TA-----
i pteAle1.KB030580         I 5 C 0
s loxAfr3.scaffold_20      28043915 2 -  46401353 -A----A
i loxAfr3.scaffold_20      C 0 C 0
s dasNov3.JH567436          1559568 6 -   2788317 -ATATTA
i dasNov3.JH567436         C 0 C 0
e triMan1.JH594629         10392631 0 +  24341844 C
e otoGar3.GL873541         21546738 0 -  23169006 C
e chlSab2.chr8             53232687 294 + 139301422 I

a score=2087461.000000
s hg38.chr8_KI270814v1_alt    12597 288 +    141812 AGTTTAA-GTTTGCTAAGTGGAAATTTTAAACCTGCTTTAGCACAAAT-----------------AATGAAATATATGAA-GTTTGTTTATTAATGACCTA-TTATGAATTATTGTTCCAAAG-CAGGT-GAT---TT-CTAAAAAGGTGGTTGAAATGTTTGCCTTCCTCTTGGTATAGCT--TTTGTG----------------------TAAAAGGGAAG-TAAAATAATG-------CAGGGCATGAAGTTTAACATTTCAAGTG-------AGATGTAT-TTATTCAAAACAATATGAAAGAAGta---------------------------------gtta-------------------------------------------------------------------------------aatcacaggatgtaag-----------------------------------------------------agcaa--tatgcaaaa-----------------atcagtgtt
s panTro4.chr8             54953605 288 + 143986469 AGTTTAA-GTTTGCTAAGTGGAAATTTTAAACCTGCTTTAGCACAAAT-----------------AATGAAATATATGAA-GTTTGTTTATTAATGACGTA-TTATGAATTATTGTTCCAAAG-CAGGT-GAT---TT-CTAAAAAGGTGGTTGAAATGTTTGCCTTCCTCTTGGTATAGCT--TTTGTG----------------------TAAAAGGGAAG-TAAAATAATG-------CAGGGCATGAAGTTTAACATTTCAAGTG-------AGATGTAT-ttattcaaaacaatatgaaagaagta---------------------------------gtta-------------------------------------------------------------------------------aatcacaggatgtaag-----------------------------------------------------agcaa--tatgcaaaa-----------------atcagtgtt
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58991861 288 + 153482349 AGTTTAA-GTTTGCTAAGTGGAAATTTTAAACCTGCTTTAGCACAAAT-----------------AATGAAATATATGAA-GTTTGTTTATTAATGACCTA-TTTTGAATTATTGTTCCAAAG-CAGGT-GAT---TT-CTAAAAAGGTGGTTGAAATGTTTGCCTTCCTCTTGGTATAGCT--TTTGTG----------------------TAAAAGGGAAG-TAAAATAATG-------CAGGGCATGAAGTTTAACATTTCAAGTG-------AGATGTAT-TTATTCAAAACAATATGAAAGAAGTA---------------------------------GTTA-------------------------------------------------------------------------------AATCAcaggatgtaag-----------------------------------------------------atcaa--tatgcaaaa-----------------atcagtatt
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48083557 282 + 100215132 AGTTTAA-GTTTGCTAAGTGGAAATTTTAAACCTGCTTTAGCAC-AAT-----------------AATGAAATATATGAA-GTTTGTTTATTAATGACCTG-TTATGAATTATTGTTCCAAAG-C------AT---TT-CTAAAATGGTGGTTGAAATGTTTGCCTTCCTCTTGGTATAGCT--TTTGTG----------------------TAAAAGGGAAG-TAAAATAATG-------CAGGGCATGAAGTTTAACATTTCAAGTG-------AGATGTAT-TTATTCAAAACAATATGAAAGAAGTA---------------------------------GTTA-------------------------------------------------------------------------------AATCAcaggatgtaag-----------------------------------------------------atcaa--taggcaaaa-----------------atcagtgtt
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61634141 283 + 150158102 AGTTTAA-GTTCGCTAAGTGGAAATTTTAAACCTGCTTTAGCACAAAT-----------------AATGAAATATATGAA-GTTTGTTTATTAATGACCTA-TTATGGATTATTGTTCCAAAG-CAGGT-GAT---TT-CTAAAAAGGTGGTTGAAATGTTTGCATTCCTCTTGGTATAGCT--TTTGTG----------------------TAAAAGGGAAG-TAAAATAATG-------CAAGGTATGAAGTTTAACATTTCAAGTG-------AGATGTAT-TTATTCAAAACAATATGAAAGAAGTA---------------------------------gtt------------------------------------------------------------------------------------ataggatgtaag-----------------------------------------------------atcaa--tatgcaaaa-----------------atcagtgtt
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58307045 283 + 146850525 AGTTTAA-GTTCGCTAAGTGGAAATTTTAAACCTGCTTTAGCACAAAT-----------------AATGAAATATATGAA-GTTTGTTTATTAATGACCTA-TTATGGATTATTGTTCCAAAG-CAGGT-GAT---TT-CTAAAAAGGTGGTTGAAATGTTTGCATTCCTCTTGGTATAGCT--TTTGTG----------------------TAAAAGGGAAG-TAAAATAATG-------CAAGGTATGAAGTTTAACATTTCAAGTG-------AGATGTAT-TTATTCGAAACAATATGAAAGAAGTA---------------------------------gtt------------------------------------------------------------------------------------ataggatgtaag-----------------------------------------------------atcaa--tatgcaaaa-----------------atcagtgtt
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53232981 283 + 139301422 AGTTTAA-GTTCGCTAAGTGGAAATTTTAAACCTCCTTTAGCACAAAT-----------------AATGAAATATATGAA-GTTTGTTTATTAATGACCTA-TTATGGATTATTGTTCCAAAG-CAGGT-GAT---TT-CTAAAAAGGTGGTTGAAATGTTTGCATTCCTCTTGGTATAGCT--TTTGTG----------------------TAAAAGGGAAG-TAAAATAATG-------CAGGGTATGAAGTTTAACATTTCAAGTG-------AGATATAT-TTATTCGAAACAATATGAAAGAAGTA---------------------------------gtt------------------------------------------------------------------------------------ataggatgtaag-----------------------------------------------------atcaa--tatgcaaaa-----------------atcagtgtt
i chlSab2.chr8             I 294 C 0
s calJac3.chrUn_GL286234       6177 286 +    110629 AGCTTAA-GTTTTCTAAGTGGAAATTTTAAACCTGCTTTAGCATAAAT-----------------AATGAAATAGATGAA-----ATTTATTAATGACCTA-TTATGGATTATTGTTCCAAAG-CAAGT-GATTTCTT-CTAAAAAACTGGTTGAAATGTTTGCCTTCCTGTTGGTATAGTA--TTTGTG----------------------TAAAAGGAAAG-TAAAATAATT-------CAGGGCATGAAGTTTAACA-CTCAAGTG-------AGATAGAT-Ttattaaaaacaatatgaaagaaata---------------------------------gtta-------------------------------------------------------------------------------aatcacaggatgtaag-----------------------------------------------------attga--tatgcaaaa-----------------atcagtgtt
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2744825 283 +  10880647 AGTTTAA-GTTTTCTAAGTGGAAATTTTAAACCTGCTTTAGCATAAAT-----------------CATGAAACACATGAA-----GTTTATTAATGACCTA-TTATGAAGTATTGTTCCAAAG-CAGGC-GAT---TT-CTAAAAAAGTAGTTGAAATGTTTGCCTTCCTGTTGGTATAGTA--TTTGTG----------------------TAAAAGGGAAG-TAAAATAATG-------CAGGACGTGAAGTTTAATA-CTCAAGTG-------AGATAGAT-TTATTCAAAACAATATGAAAGAAAca---------------------------------gtta-------------------------------------------------------------------------------aatcacaggatgtaag-----------------------------------------------------attga--tatacaaaa-----------------atcagtgtt
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21546738 253 -  23169006 ----TAA-GTTTGCCAAGTGGTAATTTTGAACTTGCTATAGCACAAAT------------------ATGGAATATATGAA-ATT-GTT--------------TTATGAGTTACTGTCTTGAAG-CAA-T-GTT---TT-CTAAAAAGATAGCTGAAATGTTTGCCTTCCTCTTGATATAACT--TTTGTG----------------------TAAAAAGGAAG-TAAAGTAATG-------CAAAGCCTGATGGTTAACA-CTTAAGTA-------A---------------AAACAATATAAACGGAATA---------------------------------ATAA-------------------------------------------------------------------------------AATCACAGGATGTGAG-----------------------------------------------------ATCAA--TATACAAAA-----------------GTCAGTGTT
i otoGar3.GL873541         C 0 I 110
s speTri2.JH393342          4218635 477 -   9676502 AGTTTGGTTTTTGCTAAAT-ATAATTTTAAATGTTATATAGCACAAAT-----------------AGTGGACTATCTGAG-CTTTGTTTATTAATGGCTCA-CTTTGAATTACTGTTCTAAAC-CAGAT-AAT---TTCCTAAAGAGATGGTGGAAATGTTTGCCTTCCTCTTGGTATAACTTATTTTGG----------------------TAGAAGGGAAG-TGGAATAATG---AGGTTAGAGC-TGATATTTAACACTGAAAGTG-------AAGAATATGTTATTCAAAACAACAAAAAAGGAATATGGTAAAAGTAAAGGCTtataaacacataaattgttattttattagagatgaacagtcccgctgggcacggtggccatgtctgtaatcccagtggctcaggaggtagaggtaggaggatcacaagatcaaagccagcctcagcaatttagtgaagtggtaaacaactcaatgagaccctgtctctaataa--aatgcagaatagggctagggatgtggctcagtggt
i speTri2.JH393342         C 0 I 3
s orcOrc1.KB316907         11147630 289 +  17242564 AG------GTTTGCCAAGTGGTAATTTTAAACTTGCTATAGCACAAAA-----------------AATGGAATA-ATGGA-C----TTTATTAATGATTCA-CTTTGGATTATTGTTCTGAAG-CAGAT-GGT---TT-CTAAAAAGCTGGTTGAAATGTTCGCC---TTCTTGGCATAGCT--CTTGCT----------------------TGAAAGGGAAG-TGAAATAATGCAGGACTCAGGACTTGATGTTTAACACTTAGCACGATAATG-AAAAATATCTTATTCAAAAAATTATAAAGGGAATa---------------------------------gtaa-------------------------------------------------------------------------------tatcacagtatataag-----------------------------------------------------agcga--tacacaaac-----------------attcttttt
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84377988 288 +  91571448 AATTTAA-GTTTGCTAAGTGATAGTTTTAGACTTGCTGTGGTGCAAGT-----------------AGCGGAATGTATGAA-C----TTTATTAATGATTTA-CTAAGGATTATTGTTCTGAAG-CAGAT-GGT---TT-CTAAAAAGCTGATTAAAGTGTTGGCC---GTCTTGGTGTTGGC--TTTGTG----------------------TGAAAGGGAAG-TGAAATAATG-------CAAGACCTGATGTTTACCACTTAATATGGTAATG-AAAAACGTTTTATTCAAAAAATTATAACGGGAATa---------------------------------gtga-------------------------------------------------------------------------------aattataggatataag-----------------------------------------------------agcaa--tatataaaa-----------------ataagtttt
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7116697 315 -  14545593 AGTTT---GTTTGCTGGATGATAATTTTAAACTTGCTATAGCACAAAT-----------------AGTGGACTATAAGAA-CTTTGTTTATTAACAATTTA-CTCAGGACTGTTGTTCTGAAG-CAGAT-GAT---TT-CTAAAAAGCTGAGTAAAATATTGGCCTTTTTCTTGGTTTTGCT--TTTATGGAAGAGAAAGTTCTTTCCCTTATGAAAGGGAAG-TGAAATAATG-------CAGGACCTGATGTCTACCACTTAATGTGATAATG-AAAAATATTTTATTCAAAAAATTataaaggaaata---------------------------------gtaa-------------------------------------------------------------------------------aatcacaggatataag-----------------------------------------------------agcaa--tatacaaaa-----------------atcagtttt
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19642946 276 -  23789964 AGCGTAA-GTTTGCCAAGTGATCATTTGAAACTTGCTATAACACAAAT-----------------AGTGGGACACGTGAA-CT---TTCTTTAATGATTTA-CTGCGGATTATTGTTCTGAAG-CAGGT-GGT---TT-CTGAAATGTGAGTTGAAATGTTTGCCTTCTTCTTGGCATAGCT--TTTGTG----------------------AGAAAGGCTAGTTGAAATGATG-------CACAGCCTGACGTTTAACACTCAATGTG------------------ATTAAGATGATTTtaaag--agta---------------------------------gtaa-------------------------------------------------------------------------------aaccacaggatagaag-----------------------------------------------------agcgacctaaaaaaaa-----------------atcagtttt
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20      28043917 291 -  46401353 AGTTTAA-GTTTGCTAAGTGGTAATTTTTAACATGCTACAGCACAAGT-----------------AGTGGAATATATGAA-GTT--TATATTTATGAATTA-TTGTGGATTATTGTTCTGAAG-CAGGAAGAT---TT-CTAAAAAGTTAATTGAAATGCTTACCTTCTTTTTAGTTTAGCT--TTTGTG----------------------TAAAAGGGAAG-TGAAATAATG-------CAAGACCTGACGTTTTACACTTAAGATGATAATGAAAAAGTATTTTATTCCAaaaattaaaaagggaata---------------------------------ataa-------------------------------------------------------------------------------gatcacaggatataag--------------------------------------------------------aa--tatacaaaa-----------------atcta-ctt
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10392631 293 +  24341844 ---TTAT-GTTTGCTAAGTGATAATTTTTAACTTGCTGCAGCACAAAT-----------------AGTGAAATATATGAA-GTT--TATATTTATGAATGACTTATAGATTATTGTTCTGAAG-CAGGAAGAT---TT-CTAAAAAGTTAGTTAAAATGTTTACCTTCTTTTCAGTATAGCT--TTTGCG----------------------TAAAAGGGAAG-TGAAATAATG-------CAAGACCTGATGTTTTACACTTAAGGTGATAATGAAAAAATATTTTATTCCGAAAATTAaaaggagaata---------------------------------gtaa-------------------------------------------------------------------------------gatcacaggattcaag-----------------------------------------------------aacaa--tatacaaaa-----------------atctatttt
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436          1559574 308 -   2788317 AGTTTAA-GGTTGCTGAGTGGTAATTTTTAACTTGCTATAGTGCTAATTTTTAACTTCGGCAATCAGTGGAATATTTGAATTTT--TTTATTACTGATTTA-CTATAGATTTTTGTTCCAAAGCCAAGTGGTT---TT-CTAGACAGCTGGTGAAAATGCTTACCTTCTT---GGTATAGCT--TTTGTT----------------------T--AAGAGACG-TGAAATAATG-------CAAGACCTAATGTTTAACACTTAAAGTGATAATGAAGAAATACTGTATTTAAAAAA-Tataaatggagta---------------------------------gtga-------------------------------------------------------------------------------gatcatagaatatgag-----------------------------------------------------agcaa--tatacaaaa-----------------atcaatttt
i dasNov3.JH567436         C 0 C 0

a score=31830.000000
s hg38.chr8_KI270814v1_alt    12885 13 +    141812 gtgtcc--------------------------------atataaa
s panTro4.chr8             54953893 13 + 143986469 gtgtcc--------------------------------atataaa
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58992149 13 + 153482349 gtatcc--------------------------------atataaa
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48083839 13 + 100215132 gtgtcc--------------------------------atataaa
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61634424 13 + 150158102 gtgtcc--------------------------------atataaa
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58307328 13 + 146850525 gtgtcc--------------------------------atataaa
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53233264 13 + 139301422 gtgtcc--------------------------------atataaa
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       6463 11 +    110629 gtttcc--------------------------------atat--a
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2745108 13 +  10880647 gattct--------------------------------atattaa
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21547101 13 -  23169006 atctct--------------------------------acagaaa
i otoGar3.GL873541         I 110 I 131
s speTri2.JH393342          4219115 45 -   9676502 gtgtccctgagttcaatccctgatactcaaaaaaaaaaaaaaaaa
i speTri2.JH393342         I 3 C 0
s orcOrc1.KB316907         11147919 13 +  17242564 atttct--------------------------------acgtatt
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84378276 13 +  91571448 attttt--------------------------------gtatatt
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7117012 13 -  14545593 attttt--------------------------------gtatatt
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19643222 13 -  23789964 atttct--------------------------------acgtatt
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20      28044208 13 -  46401353 tttcct--------------------------------gtatgtt
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10392924 13 +  24341844 tttcct--------------------------------atatatt
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436          1559882 13 -   2788317 attttt--------------------------------atatatt
i dasNov3.JH567436         C 0 I 1

a score=369254.000000
s hg38.chr8_KI270814v1_alt    12898 53 +    141812 agaaatgaatagtctaa------aattt-tt-aaaaatctattcacaatagcatcaaa--aag
s panTro4.chr8             54953906 52 + 143986469 agaaatgaatagtctaa------aattt-tt-aaaaat-tattcacaatagcatcaaa--aag
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58992162 53 + 153482349 agaaatgaatagtctaa------aattt-tt-aaaaatccattcacaatagcatcaaa--aag
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48083852 53 + 100215132 agaaatgaatagtctaa------aattt-tt-aaaaatccattcacaatagcatcaaa--aag
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61634437 53 + 150158102 ataaatgaatagtctaa------aattt-ta-aaaaatccattcacaatagcatcaaa--aag
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58307341 53 + 146850525 ataaatgaatagtctaa------aattt-ta-aaaaatccattcacaatagcatcaaa--aag
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53233277 53 + 139301422 ataaatgaatagtccaa------aattt-ta-aaaaatccattcacaatagcatcaaa--aag
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       6474 53 +    110629 aaaaatgaatagtctaa------aattt-tt-aaaaatccattcacagtagcatttaa--aaa
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2745121 54 +  10880647 agaactgaatagtctaa------aattt-ttaaaaaatccattcacagtagcatttaa--aaa
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21547245 56 -  23169006 agaaatgaat-gtctgagaatg-aaatt-tt-aaaaatccatcctcagggg-accaga--aag
i otoGar3.GL873541         I 131 C 0
s speTri2.JH393342          4219160 57 -   9676502 agatatgaccagtctaatagtgaaaatt-tt---aaattgattcacaatagcatcaaa--aag
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907         11147932 55 +  17242564 g-----aaatagtccaaaagtgaaatttgtt-aaaagttcattcacaggagcatcgaa--aag
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84378289 59 +  91571448 agaaatgaacagtccaaaagtgaaattt-aa-aaaaatttattcacagttgcatcaaa--aat
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7117025 59 -  14545593 agaaatgaacagtccaaaagtgaaattt-ta-aaaaattcattcacagtggcatcaaa--aag
i cerSim1.JH767782         C 0 I 203
s pteAle1.KB030580         19643235 61 -  23789964 agaaatgaacagtccgaaagtgaaattt-aa-aaaaatccattcattgtagcatctaagtaat
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20      28044221 55 -  46401353 -agaatgaacaattcaaaagtaaaa----ta-aaaaatatattcacagtagaatcaaa--cag
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10392937 53 +  24341844 -agaatgaacaattcaaaagtaaaa----ta-aaaaatatattcacaatagcatcaaa--c--
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436          1559896 53 -   2788317 aaaaatgaataatctaaaagtgaaa----t----aaatccattcacaataatatcata--tgg
i dasNov3.JH567436         I 1 C 0

a score=575553.000000
s hg38.chr8_KI270814v1_alt    12951 70 +    141812 aacaatatgcttaggaataaattt-taaaaagaagtgcaaga--gctacactggaaataaaaagcattgctga
s panTro4.chr8             54953958 70 + 143986469 aacaatatgcttaggaataaattt-taaaaagaagtgcaaga--gctacactggaaataaaaagcattgctga
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58992215 69 + 153482349 aacaatatgcttaggaataaattt-taaaaagaagtgcaaga--gctacattggaaat-aaaagcattgatga
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48083905 70 + 100215132 aacaatatgcttaggaataaattt-taaaaagaagtggaaga--gctacactggaaataaaaagcattgctga
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61634490 70 + 150158102 aacaatatgcgtagaaataaattt-taaaaagaagtgtaaga--gctacgctggaaataaaaagcattgctga
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58307394 70 + 146850525 aacaatatgcgtagaaataaattt-taaaaagaagtgtaaga--gctacgctggaaataaaaagcattgctga
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53233330 70 + 139301422 aacaatatgcttaggaataaattt-taaaaagaagtgtaaga--gctatgctggaaataaaaagcattgctga
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       6527 70 +    110629 aacaatatgcttaggaataaattt-taacaagaagtgcaaga--gctacactggatataaaaaatattgctgg
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2745175 70 +  10880647 aacaatatgcttaggaataaattt-taacaagaagcgcaaga--gctacactggatataaaaagcattgctgg
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21547301 60 -  23169006 aataacgtg--taggagtaaactt---aacagaagtgcaagc--------ctgagaatagaaagcattgctgt
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4219217 69 -   9676502 aagaatatgcttgggaataaattt----aatgaagcatgagacaactacactggaaatgaaaagcactgctga
i speTri2.JH393342         C 0 I 238
s orcOrc1.KB316907         11147987 73 +  17242564 gataatatgcttaggaataaatttattgaaagaaatgcaagaccactaaactgaaaataaaaatctttgctga
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84378348 73 +  91571448 aataatatgtttaggaataaatttactagaagatgtgcaagaccactactctgaaagtaaaaggaattgctgg
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7117287 73 -  14545593 aataatatgcttaggaataaatttattagaagaagtgcaagaccactacactgaaaataaaaatcattgctga
i cerSim1.JH767782         I 203 C 0
s pteAle1.KB030580         19643296 73 -  23789964 aataatgtgcttaggaataactttattaaaagaggtgcgagaccactacactgaaagtaaaaatcactgctga
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20      28044276 73 -  46401353 aataatatgcttaggaataaacttaacaaaagaagttcaagaccactacactgaaaataaaaagtattgcgga
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10392990 67 +  24341844 aatcatatgtttaggaataaac------aaagaagttcaagatgactacactgaaaatagaaagcattgctga
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436          1559949 57 -   2788317 aataatatagttagaaataaagtgaacaaaagaagtgcaag-----tacttctgaaataaaa-----------
i dasNov3.JH567436         C 0 C 0

a score=380338.000000
s hg38.chr8_KI270814v1_alt    13021 87 +    141812 gagaaattaaagaag------------atctattaataaataaacagaggcatacaccatatttatg------ggg-gactcaaat--cttgttaagacggcaattct
s panTro4.chr8             54954028 84 + 143986469 gagaaattaaaga---------------tctattaataaataaacagaggcatacaccatatttatg------ggg-gactcaaat--cttgttaagacggcagttct
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58992284 87 + 153482349 gagaaattaaagaag------------atctattaataaataaacagaggcatacaccatatttatg------ggg-ggctgaaat--cttgttaagatggcaattct
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48083975 87 + 100215132 gagaaattaaagaag------------atctattaataaataaacagaggcatacaccatatttatg------ggg-gactcaaat--cttgttaagatggcaattct
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61634560 88 + 150158102 gagaaagtaaaga---------------tctattaataaataaatagaggcatacaccatatttatgga-ttaggg-gactc-aat--cttgttaagacggcaatttt
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58307464 88 + 146850525 gagaaagtaaaga---------------tctattaataaataaatagaggcatacaccatatttatgga-ttaggg-gactc-aat--cttgttaagacggcaatttt
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53233400 88 + 139301422 gagaaagtaaaga---------------tctattaataaataaatagaggcatacaccatatttatgga-ctagcg-gactc-aat--cttgttaagacagcaatttt
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       6597 87 +    110629 gagaaattaaaaaag------------atctatt----aataaacggaggcatacaccatgtttatgga-ttgggg-gactc-aat--cttattaagatggaagttct
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2745245 87 +  10880647 gagaaattaaagaag------------atctatt----aataaacataggcatacaccatgtttatgga-ttggag-gactc-aat--cttattaagatggaagttct
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21547361 53 -  23169006 gaggcgct-----------------------------------------------gccatgttgagg-g-tcggga-gactt-agtagcatgt----gtggcagttcc
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4219524 93 -   9676502 gagaaaataaagaagtcctagataaatatacaatgataaatatacgaaggtat--accatgttcatg----------gattg-gaa--gttgttaagatggtatttta
i speTri2.JH393342         I 238 C 0
s orcOrc1.KB316907         11148060 84 +  17242564 cagaaatgaaagaag------------accta------aa-gcatggagagagacaccacattcatgga-tgggca-gactc-agt--attgttaagacggcagttct
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84378421 85 +  91571448 gagaaattaaagaag------------accta------actgaatggagagagatcccacattgatgga-tgggaa-gactc-aaa--attactgatatggcagttct
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7117360 85 -  14545593 gagaaattaaagaag------------accta------gctaaatgaagagatgtaccacgttcatgga-ttggaa-gactc-aat--attattggtagagcaattct
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19643369 76 -  23789964 t--------aagaac------------accta------gacagatggagaggtgtaccatattcatgga-ttggaa-gaccc-agt--gtcgttaagatggcaatt-t
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20      28044349 85 -  46401353 gagaaattaaagagg------------accta------aataaatggagaagtataccatgttcatgga-tttgaa-gcccc-agt--gttgttaagatgccaggttt
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10393057 85 +  24341844 gaaaaattaaagaag------------accta------aataaatgggtagatataccatgttcatgga-tatgaa-gcccc-agt--attgttaagatggcagtttt
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436          1560006 68 -   2788317 -------------------------------a------aaacattggggagatataccatatccacaaactctgaatgacta-aat--tttgttaagatggcagttct
i dasNov3.JH567436         C 0 I 403

a score=323586.000000
s hg38.chr8_KI270814v1_alt    13108 43 +    141812 tccacatttgagcaataggttcattgtaatccctggcagaatt
s panTro4.chr8             54954112 43 + 143986469 tccacatttgagcaataggatcaatgtaatccctggcagaatt
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58992371 43 + 153482349 tccacatttgagcaataggttcaatgtaatccctggcagaatt
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48084062 43 + 100215132 tccacatttgagcaatagattcaatgtaatccctggcagaatt
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61634648 43 + 150158102 tccacatttgagcaataggttcaatgtaatccctggcagaatt
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58307552 43 + 146850525 tccacatttgagcaataggttcaatgtaatccctggcagaatt
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53233488 43 + 139301422 tccacatttgagcaataggtttaatgtaatccctggcagaatt
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       6684 43 +    110629 tccacatttgagcaataggttcaatgtaatccctggcagaatt
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2745332 43 +  10880647 tccacatttgagcaataggttcaatgtaatccctggcagaatt
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21547414 43 -  23169006 tgcgctgtggagcaaaagagtcagtgcagtttccgtcagaatc
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4219617 42 -   9676502 tctgtatttgattaataaattcagtgca-ttcctgttaaaatt
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907         11148144 43 +  17242564 ctcacagttgatccatagagtcaatgcagtgcctgtcaaaatt
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84378506 43 +  91571448 cccacaatcgataaatagattcaatgcaattcctgtcacaatt
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7117445 43 -  14545593 cccacaatcggtaaatagattcaatgcaatttctgtcacaatt
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19643445 43 -  23789964 cccacaatcgatgagtggatacagtgcaatacctatcgaaatT
i pteAle1.KB030580         C 0 I 17
s loxAfr3.scaffold_20      28044434 39 -  46401353 cccataatt----aatagatttagtgcaatccccatcaaaatt
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10393142 39 +  24341844 cccacagtt----aatagattcaatgcaatccctatcaaaatt
i triMan1.JH594629         C 0 C 0
e dasNov3.JH567436          1560074 403 -   2788317 I

a score=70173.000000
s hg38.chr8_KI270814v1_alt    13151 8 +    141812 ctagcagg
s panTro4.chr8             54954155 8 + 143986469 ctagcagg
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58992414 8 + 153482349 ctagTAGG
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48084105 8 + 100215132 ctagcAGG
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61634691 8 + 150158102 ctagcagg
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58307595 8 + 146850525 ctagcagg
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53233531 8 + 139301422 ctagcagg
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       6727 8 +    110629 ctagcagg
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2745375 8 +  10880647 ccagcagg
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21547457 8 -  23169006 ccagcagg
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4219659 7 -   9676502 cttacag-
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907         11148187 8 +  17242564 ccagcagg
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84378549 8 +  91571448 ccagcagg
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7117488 8 -  14545593 ccagcagg
i cerSim1.JH767782         C 0 I 22
s loxAfr3.scaffold_20      28044473 8 -  46401353 ccagcagg
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10393181 8 +  24341844 ccagcagg
i triMan1.JH594629         C 0 C 0
e dasNov3.JH567436          1560074 403 -   2788317 I
e pteAle1.KB030580         19643488 17 -  23789964 I

a score=843.000000
s hg38.chr8_KI270814v1_alt    13159  5 +    141812 a---------tttt
s panTro4.chr8             54954163  5 + 143986469 a---------tttt
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58992422  5 + 153482349 A---------tttt
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48084113  5 + 100215132 A---------tttt
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61634699  5 + 150158102 a---------tttt
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58307603  5 + 146850525 a---------tttt
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53233539 14 + 139301422 attttttttttttt
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       6735  5 +    110629 a---------tttt
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2745383  5 +  10880647 a---------tttt
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21547465  5 -  23169006 c---------tctg
i otoGar3.GL873541         C 0 C 0
s orcOrc1.KB316907         11148195  5 +  17242564 ---------ctttt
i orcOrc1.KB316907         C 0 I 16
s equCab2.chr15            84378557  5 +  91571448 ---------ctttt
i equCab2.chr15            C 0 I 12
s loxAfr3.scaffold_20      28044481  3 -  46401353 -----------ctt
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10393189  3 +  24341844 -----------ctt
i triMan1.JH594629         C 0 C 0
e dasNov3.JH567436          1560074 403 -   2788317 I
e speTri2.JH393342          4219666  0 -   9676502 C
e pteAle1.KB030580         19643488 17 -  23789964 I
e cerSim1.JH767782          7117496 22 -  14545593 I

a score=8190.000000
s hg38.chr8_KI270814v1_alt    13164 2 +    141812 tt
s panTro4.chr8             54954168 2 + 143986469 tt
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58992427 2 + 153482349 tt
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48084118 2 + 100215132 tt
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61634704 2 + 150158102 tt
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58307608 2 + 146850525 tt
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53233553 2 + 139301422 tt
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       6740 2 +    110629 tt
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2745388 2 +  10880647 tt
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21547470 2 -  23169006 tt
i otoGar3.GL873541         C 0 I 350
e dasNov3.JH567436          1560074 403 -   2788317 I
e equCab2.chr15            84378562 12 +  91571448 I
e speTri2.JH393342          4219666 0 -   9676502 C
e triMan1.JH594629         10393192 0 +  24341844 C
e loxAfr3.scaffold_20      28044484 0 -  46401353 C
e pteAle1.KB030580         19643488 17 -  23789964 I
e cerSim1.JH767782          7117496 22 -  14545593 I
e orcOrc1.KB316907         11148200 16 +  17242564 I

a score=91579.000000
s hg38.chr8_KI270814v1_alt    13166  96 +    141812 ttttttt-------gagacagagtcttgctc--tgtcacccaggctggagtgcaggggcacgatctcagctcactgcaacctccacctcccctggcttcaagtga
s panTro4.chr8             54954170 103 + 143986469 ttttttttttttttgagacagagtcttgctc--tgtcacccaggctggagtgcaggggcaggatctcagctcactgcaacctccacctcccctggcttcaagtga
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58992429  95 + 153482349 tttttt--------gagacagagtcttgctc--tgtcacccaggctggagtgcagtggcacgatcttcgctcactgcaacctccgcctcccctggcttcaagcaa
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48084120 105 + 100215132 ttttttttttttttgagacagagtcttgctctgtgtcacccaggctgcagtgcagtggcactatcttggctcactgcaacctccgcctcccctggcttcaagtga
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61634706  98 + 150158102 ttttttttt-----gagacggactcttgctc--tgtcacccaggctggagtgcactggcacaatctcggctcactgcaacctctgcctcccctggcttcaagtga
i rheMac3.chr8             C 0 I 220
s macFas5.chr8             58307610  98 + 146850525 ttttttttt-----gagacggactcttgctc--tgtcacccaggctggagtgcactggcacgatctcggctcactgcaacctctgcctcccctggcttcaagtga
i macFas5.chr8             C 0 I 222
s chlSab2.chr8             53233555  98 + 139301422 ttttttttt-----gagacggaatcttgctc--tgtcacccaggctggagtgcagtggcacgatctcggctcactgcaacctctgcttcccctggcttcaagtga
i chlSab2.chr8             C 0 I 223
s calJac3.chrUn_GL286234       6742   8 +    110629 tttttttt-------------------------------------------------------------------------------------------------
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2745390  14 +  10880647 tttttttttttttt-------------------------------------------------------------------------------------------
i saiBol1.JH378179         C 0 C 0
s speTri2.JH393342          4219666   4 -   9676502 --------------------------------------------------------------atat---------------------------------------
i speTri2.JH393342         C 0 C 0
e dasNov3.JH567436          1560074 403 -   2788317 I
e equCab2.chr15            84378562  12 +  91571448 I
e triMan1.JH594629         10393192   0 +  24341844 C
e loxAfr3.scaffold_20      28044484   0 -  46401353 C
e pteAle1.KB030580         19643488  17 -  23789964 I
e cerSim1.JH767782          7117496  22 -  14545593 I
e orcOrc1.KB316907         11148200  16 +  17242564 I
e otoGar3.GL873541         21547472 350 -  23169006 I

a score=108620.000000
s hg38.chr8_KI270814v1_alt    13262 25 +    141812 ttttatagaaatgaacaagctgatt
s panTro4.chr8             54954273 25 + 143986469 ttttatagaaatgaacaagctgatt
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58992524 25 + 153482349 ttttATagaaatgaacaagctgatt
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48084225 25 + 100215132 ttttATaaaaatgaacaagctgatt
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61635024 25 + 150158102 ttttgtagaaatgaacaggctgatt
i rheMac3.chr8             I 220 C 0
s macFas5.chr8             58307930 25 + 146850525 ttttgtagaaatgaacaggctgatt
i macFas5.chr8             I 222 C 0
s chlSab2.chr8             53233876 25 + 139301422 ttttatagaaatgaacaggctgatt
i chlSab2.chr8             I 223 C 0
s calJac3.chrUn_GL286234       6750 20 +    110629 -----tagaagtgaacaagctgatc
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2745404 25 +  10880647 ttttgtagaagtgaacaagctgatc
i saiBol1.JH378179         C 0 C 0
s speTri2.JH393342          4219670 25 -   9676502 ctttgtagatgctgacaagatgatc
i speTri2.JH393342         C 0 C 0
s loxAfr3.scaffold_20      28044484 25 -  46401353 ttttgtagaaatcgacaaagtgatc
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10393192 25 +  24341844 ttttgtagaagtcaataaactgatc
i triMan1.JH594629         C 0 C 0
e dasNov3.JH567436          1560074 403 -   2788317 I
e equCab2.chr15            84378562 12 +  91571448 I
e pteAle1.KB030580         19643488 17 -  23789964 I
e cerSim1.JH767782          7117496 22 -  14545593 I
e orcOrc1.KB316907         11148200 16 +  17242564 I
e otoGar3.GL873541         21547472 350 -  23169006 I

a score=102720.000000
s hg38.chr8_KI270814v1_alt    13287  30 +    141812 ctaaaacttaaatg------------------------------------------------------------------------------------------------------------------gaaacacaaaggatct
s panTro4.chr8             54954298  30 + 143986469 ctaaaacttaaatg------------------------------------------------------------------------------------------------------------------gaaacacaaaggatct
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58992549  30 + 153482349 ctaaaacttaaata------------------------------------------------------------------------------------------------------------------gaaacacaaagggtct
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48084250  30 + 100215132 ctaaaatgtaaatg------------------------------------------------------------------------------------------------------------------gaaacacaaagtatct
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61635049  38 + 150158102 ctaaaacttaaatggaaacaca----------------------------------------------------------------------------------------------------------gaaacacaaaggatct
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58307955  38 + 146850525 ctaaaacttaaatggaaacaca----------------------------------------------------------------------------------------------------------gaaacacaaaggatct
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53233901  38 + 139301422 ctaaaacttaaatggaaacaca----------------------------------------------------------------------------------------------------------gaaacacaaaggatct
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       6770  30 +    110629 ctaaaatttaaatg------------------------------------------------------------------------------------------------------------------gaaataaaaaggatct
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2745429  30 +  10880647 ctaaaatttaaatg------------------------------------------------------------------------------------------------------------------gaaatacaaaggatct
i saiBol1.JH378179         C 0 C 0
s speTri2.JH393342          4219695  30 -   9676502 tcaaattttaagtg------------------------------------------------------------------------------------------------------------------gaaacacaaaggacct
i speTri2.JH393342         C 0 C 0
s loxAfr3.scaffold_20      28044509  30 -  46401353 ctaaaatttaaata------------------------------------------------------------------------------------------------------------------gaaatgcaaacgacat
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10393217  30 +  24341844 ttaaaatttaaatg------------------------------------------------------------------------------------------------------------------gaaatacaaaggacat
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436          1560477 144 -   2788317 ataaatcttgaaaaaaaaaagatggcagttctcccacagttatcaatagatttaatgcagtccctatcatagttccagcaggctttttaaaaaatagaaattgacaagctgctcctaaaatttatatggaaatataaaggagct
i dasNov3.JH567436         I 403 C 0
e equCab2.chr15            84378562  12 +  91571448 I
e pteAle1.KB030580         19643488  17 -  23789964 I
e cerSim1.JH767782          7117496  22 -  14545593 I
e orcOrc1.KB316907         11148200  16 +  17242564 I
e otoGar3.GL873541         21547472 350 -  23169006 I

a score=1216616.000000
s hg38.chr8_KI270814v1_alt    13317 305 +    141812 aggatag-------------tttaaaaaaaaaaaaaaa-------------cagaggaaaaaagttgaagggcttacactaccgcattac---aaaactt-accataaagctacagtcatcaagacagtgtgctaata----gtgtagagatagacatgttaattagttgagtaaaat-------------------------------------atggtcaaa-gattgttgacaaatgtgctaggac-aagtcactggg-ggaaggattatcttttcaacagatgatgtggtaacaattgtatatatacacatgcaaacaaataaata---at-----aaatcttgaggtccacctcagaacat----acacagaaattaactcaaaat
s panTro4.chr8             54954328 307 + 143986469 aggatag-------------tcaaaaaaaaaaaaaaaaaa-----------cagaggaaaaaagttgaagggcttacactaccacattac---aaaactt-accataaagctacagtcatcaagacagtgtgctaata----gtgtagagatagacatgttaattagttgagtaaaat-------------------------------------atggtcaaa-gattgttgacaaatgtgctaggac-aagtcactggg-ggaaggattatcttttcaacagatgatgtggtaataattgtatatatacacatgcaaacaaataaata---at-----aaatcttgagttccacctcagaacat----acacagaaattaactcaaaat
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58992579 318 + 153482349 aggatag-------------ttcaaaaaaaaaaaaaaaaaaaaaaaaaaaccagaggaaaaaagttgaagggcttacactaccacattac---aaaactt-accataaagctacagtcatcaaaacagtgtgctaata----gtgtagagatagacatgttaattagttgagtaaaat-------------------------------------atggtcaaa-gattgttgacaaatgtgctagggc-aagtcactggg-ggaaggattatcttctcaacagatgatgcggtaacaattgtatatatacacatgcaaacaaataaata---at-----aaatcttgagttccacctcagaacat----acacagaaattaactcaaaat
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48084280 297 + 100215132 aggatag-------------ttcaaaaaaaa--------------------tagaggaaaaaagtt-aagggcttacactaccgcattat---aaaactt-accataaagctacagtcatcaagacagtgtgctaata----gtgtagagatagacatgttaattatttgagtaaaat-------------------------------------atggtcaaa-gattgttgacaaatgtgctagggc-aagtcactggg-gaaaggattatcttttcaatggatgatgcagtaacaattgtatatatacacatgcaaacaaataagta---at-----aaatcttgagttccacctcagaacat----acacagaaattaactcaaaat
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61635087 284 + 150158102 aggatag-------------ttcagaaaaaaa-------------------aagag-gaaaaaattgaagggcttacactacagcattac---aaaactt-gccataaagctacagtcatcaaag-actgtgctaata----gtgtagagacagacatgttaattagttgagtaaaat-------------------------------------atggtcaaa-gac--ttgacagatgtgctagagc-aagtcactggg-ggaaggattatcttttcaacagatgatgcggtaacgattgtatatatacat------acaaacaaata---at-----aaatcttgagctccacctcagaacat----acacagaaattaactc-----
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58307993 284 + 146850525 aggatag-------------ttcagaaaaaaa-------------------aagag-gaaaaaattgaagggcttacactacagcattac---aaaactt-gccataaagctacagtcatcaaag-actgtgctaata----gtgtagagacagacatgttaattagttgagtaaaat-------------------------------------atggtcaaa-gac--ttgacagatgtgctagagc-aagtcactggg-ggaaggattatcttttcaacagatgatgcggtaacgattgtatatatacat------acaaacaaata---at-----aaatcttgagctccacctcagaacat----acacagaaattaactc-----
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53233939 287 + 139301422 aggatag-------------ttcagaaaaaaa-------------------aagagtaaaaaaattgaagggcttacactaccgcattac---aaaattt-accataaagctacagtcatcaaag-actgtgctaata----gtgtagagacagacatgttaattagttgagtaaaat-------------------------------------atggtcaaa-gattgttgacaaacgtgctagggc-aagtcactggg-ggaaggattatcttttcaacagatgatgcagtaacaattgtatatatacat------acaaacaaata---at-----aaatcttgagctccacctcagaacat----acacagaaattaactc-----
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       6800 288 +    110629 aggatag-------------ttcaaa-------------------------aagaggaaaaaagtt---ggatttacactacctcattaccataaagctt-aacataaagctactg---tcaagacattgttctaata----ttgtagagatagacgggtatattagttgagtaaaat-------------------------------------atggtcaaa-aattgttgacagatgtggtaaggc-aagtcactggg-gaaaggattatcttttcaacagatgatgtgataacaattgtatatatacat--gcaaacaaataaata---at-----aaatcttgagctccacctcagaacat----acacagaaattaactcaatat
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2745459 288 +  10880647 aggatag-------------ttcaaa-------------------------aagaggaaaaaagtt---ggatttacactaccttattac---aaaactc-accataaagctacagtcatcaagacattgttctaata----ttgtagagatagatgtgtacattagttgagtaaaat-------------------------------------atggtcaaa-aattgttgacagatgtggtaaggc-aagtcactggg-gaaaggattatcttttcaacagatgatgtgataacaattgtatatatatgt--gcaaacaaataaata---at-----aaaccttgagctccacctcagaacat----aaacagaaattaactcaacat
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21547822 291 -  23169006 gggacagcttgaggctctgtctcaaaaaaaaa-------------------aaaaaaaaaaaaa-----------------------------aaaactt-agcatcaagctgcatcagttacgacagtgcactcctgcagtgtgttgagatggatgtattcgtcagttgaacaaaat-------------------------------------ctggtcaaatgattgctgacaaatttgctagagc-aagtcac-ggg-aaaagggttatcttctcaacaagtggtgcctttacaattggatatac-cgt--aggaacaagtaagtaaagat-----gcattttaactcctacctcagaaggga---atacaaaaataaacccaaagt
i otoGar3.GL873541         I 350 C 0
s speTri2.JH393342          4219725 271 -   9676502 gggatag-------------cccc---------------------------taaag--aaaaagttggagggcttacagtacctcatttc---aaaactt-accttaaagctctagtaattaaaatagtgtacaaaag----gtgtgggggtagacatgcatattagctgagcaaaat-------------------------------------atgatcaaatgattattgacca-------------aagtcactgtgccaaaggattatcatttcaatag-tggtactatgacatttgaaca-acacag------gcaaacaaata------------atctttacctttaccttaaaacacacacacacacaaattaacttaaaat
i speTri2.JH393342         C 0 C 0
s loxAfr3.scaffold_20      28044539 323 -  46401353 aggatag-------------ccgaaa-------------------------aagaac---agagtcagaggacttatgctgcctcatttc---aagacgtaatcataaagctacattaatcaaggcagcgtggtatta----gtgtaggggtagac-tagagatcaaaggaacaaaatagagagtctagaaggatactctaacatatatatatatatggtcagatgatttttgacaaaaaagcaaaggc-aattcactgggggaaaggattatcttcttaaaaaatggtgctataacaattggatatccacat--gcaaacaaacaaata---a---------ccttgactcatacttcaaaatac----acacaaaaattaactcaaaat
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10393247 322 +  24341844 aggataa-------------ccaaaa-------------------------aagaac-----agtcagaggacttacactgcctcatttc---aaaacttaaccataaagctacattaatcaaggcagtgtggtctta----gcatagggatagacatatagatcaaggaaacaaaatagagagtctagaaggatacccta----atgtatatatatggtcaaatgatttttgacagaagtactaacgt-atttcactgggggaaaggattatctttttaaaaaatggtgctgtaacaattggatatccacat--gcaaacaaacaaata---aa-----tagccttgacctatacttcaaattat----acacaaaaattaactcaaagt
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436          1560621 320 -   2788317 agaatag-------------ctgaaag------------------------aagagc---aaagttgaagggcttacactg----atttc---aaaattt-accataaagctacagtaatcaaaacagtgcattatta----gcatacggatagacagatagatcaatggaacaaaat--agagtctagctatatacccca--------atatatatggcccattgacttttgacaagagtgctaaggcaatttcactagaagaaatggtcatcttttcaatgaatggtggtgtaacagttggacagccacat--gcaaatcagttgatc---aatcacttggtatcaaattatagttcaaaacat----atacaaaaattaacttaaaat
i dasNov3.JH567436         C 0 I 520
e equCab2.chr15            84378562  12 +  91571448 I
e pteAle1.KB030580         19643488  17 -  23789964 I
e cerSim1.JH767782          7117496  22 -  14545593 I
e orcOrc1.KB316907         11148200  16 +  17242564 I

a score=1007961.000000
s hg38.chr8_KI270814v1_alt    13622 267 +    141812 agaccagaaacttacaagtgag--a--aaaaactgtacaacctgtaggaaaaaa--taggagtaaatatttttgacattggattagc-aaa-gatatgacattaaaagatatgacattatttttttgaagacatgacaaaat-aaaaggaaaattagtagtttggacttcattaaaataaaaaaaaa--actcttatgaagaagacaccattaaca-aaatgaaaaaaa-caagccatagactaggataaaatacttgaaaaattcatatct---gataaagt
s panTro4.chr8             54954635 269 + 143986469 agaccagaaacttacaagtgag--a--aaaaactgtacaatctgtaggaaaaaa--taggagtaaatatttttgacattggattagc-aaa-gatatgacattaaaagatatgacattatttttttgaagatatgacaaaat-aaaaggaaaattagtagtttggacttcattaaaataaaaaaaaa-tactcttacgaagaagacaccattaaca-aaatgaaaaaaaacaagccatagactaggataaaatacttgaaaaattcatatct---gataaagt
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58992897 269 + 153482349 agaccagaaacttacaagtgag--a--aaaaactgtacaacctataggaaaaaa--taggagtaaatatttttgacattggattagc-aaa-gatatgacattaaaagatatgacattatttttttgaagatatgacaaaat-aaaaggaaaattagtagtttggacttcattaaaataaaaaaaaattactcttccgaagaagacaccattaaca-aaatgaaaaaaa-caagccatagactaggataaaatacttggaaaattcatatct---gataaagg
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48084577 269 + 100215132 agagcagaaacttacaagtgag--a--aaaaactgtacaacctgtaggaaaaaa--taggagtaaatatttttgacattggattagc-aaa-gatatgacattaaaagatatgacatt-tttttttgaagatatgacaaaat-aaaaggaaagttagtagtttggacttcattaaaataaaaaaaaattactcttccgaagaagacaccattaaca-aaatgaaaaaaaacaagccatagactaggataaaatacttgaaaaattcatatct---gataaagg
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61635371 269 + 150158102 agaccagaaacctacaagtgag--a--aaaaactgtgcaacctgtaggaaaaaa--taggagtaaatatgttcgacattggattagc-aaa-gatatgacattaaaagatatgacattattttgttgaagatatgataaaat-aaaaggaaaattagtagtttggacttcattaaaataaaaaacatttcctcttccaaagaagacaccattaaca-aaatgaaaaaaa-caagccattgactaggataaaatacttgcaaaatttatatct---gataaggg
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58308277 270 + 146850525 agaccagaaacctacaagtgag-aa--aaaaactgtgcaacctgtaggaaaaaa--taggagtaaatatgttcgacattggattagc-aaa-gatatgacattaaaagatatgacattattttgttgaagatatgacaaaat-aaaaggaaaattagtagtttggacttcattaaaataaaaaacatttcctcttccaaagaagacaccattaaca-aaatgaaaaaaa-caagccattgactaggataaaatacttgcaaaatttatatct---gataaggg
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53234226 262 + 139301422 agaccagaaacctacaagtgag--a--aaaaactgtgcaacctgtaggaaaaaa--taggggtaaatatgttcgacattggattagc---------tgacattaaactatatgacattattttgttgaagatatgacaaaat-aaaaggaaaattagtagtttggactccattaaaataaaaaacatgtcctcttccgaagaagacaccactaaca-aaatgaaaagca-caagccatagactaggataaaatacttgcaaaatttgtatct---gataaggg
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       7088 269 +    110629 agaccagagacctacaagtgag--a--aaaaactgtacaacctgtaggtaaaaa--caggagtaaatacttttgtcatgggaatagc-aaa-gatacgacattaaaagataagacgttattttgttcaagatatgacaaaaattaaaggaaaattagtagtttgtgcttcattcaaatcacaaa-attcactctcctgaagaagacaccattagtgaaaatgaaaaaa--caagccacagactatgataacatacttgaaaaatacgtatct---gataaagg
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2745747 252 +  10880647 agaccagagacctacaagccag-aa--aaaaaccgtacaacctgtaggtaaaaa--caggagt-aatatttttgtcattggaatagc-----------------aaagataagacattattttgttcaagatatgacaaaag-taaaggaaaattagtagtttgtacttcattcaaataacaaa-attcactcttctgaagaagacaccattaaag-aaatgaaaaaa--caagccacagactatgataatatacttggaaaatacatatct---gttaaagg
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21548113 244 -  23169006 aactcccagatctacctgggaa-ga--taaaactctacagcctatagaaaaagg--agaaaaaaaatacttc---cattggattagg-ggacaacataatattaaa----accaca------------------aagaaaat-gaaaggaaatttgatggtttggacttcattaaaataaaaaaatttcactctt---ggaaagaca-tgttaaga-aaatggaagaa--caggccactgattaggataaaatatttgcaaaatctatatatcagaataaaga
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4219996 233 -   9676502 acattggagactttcatgtgag--accagaaattctaccatttgtag------------gaggaaacatttttgacagtgaattaggtgaa-ggtgtg------------atgatatta--------aaaacatga-acaac-aaaaggaaaattgatggttttgactttatttaaaataaaacagtttgatcttc---agaagacactgttcata-aactgaaaagg--caagccacagactaatataa---gtttgcaaaaatt-tatct---gctaaagt
i speTri2.JH393342         C 0 I 155
s loxAfr3.scaffold_20      28044862 233 -  46401353 ggatcataggtctacatcttgggac--aaaaaatacaaaacttgtagaagac------------aatccttgtgacactggattaggcaaa-gatatgatattaaaagcacaaaca------------------------at--aaaggaaacttgataaattagactttattaaaattaaaaatgttcactcttcagaaaaggacaccattaaga-aagt-aaaaga--caaggcatagactaggataaagtgtttataaaaca--tgtct---gataaaag
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10393569 246 +  24341844 ggatcatagatctacacgttggggc--aaaaaatataaaacttgtagaagataacgtaggagaaaatccttgtgacattggattaggcaaa-gatatgatattaaaagcacaaaca------------------------at-aaaaggaaacttgataaattggacgtcattaaaattaaaaatgttcactcttcagaaaaggacaccactaaga-aaat-aaaaga--caaggtatagttcaggataaaatatttacaaaaca--tatgt---gatgaaag
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436          1561461 215 -   2788317 Agattatagacctacatgttagaaa--agaaactataaaatctttagaagaaaacatagaa---aattgttgtgatgttggattaggcaaa-g--atgacattaaaaac-----------------------------------------------------caaacttcatttaaattaaacattttcattcttcagaagaagacatcattaagc-aaatgagaaga--caagacacagactggga-aaaatctttgcaaaccatttatct---gataaagg
i dasNov3.JH567436         I 520 C 0
e equCab2.chr15            84378562  12 +  91571448 I
e pteAle1.KB030580         19643488  17 -  23789964 I
e cerSim1.JH767782          7117496  22 -  14545593 I
e orcOrc1.KB316907         11148200  16 +  17242564 I

a score=152633.000000
s hg38.chr8_KI270814v1_alt    13889 45 +    141812 at---------------------------tgtacccagaatatttaaaga----------------actaaataagcaacccagtaag
s panTro4.chr8             54954904 45 + 143986469 at---------------------------tgtacccagaatatttaaaga----------------actaaataagcaacccaggaag
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58993166 45 + 153482349 at---------------------------tgtacccagaatatttaaagt----------------actaaataagcaacccagtaag
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48084846 45 + 100215132 at---------------------------tgtacccagaatatttaaaga----------------actaaataaacaacccagtaag
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61635640 72 + 150158102 ataaatttatatctgataaggatctgataagtacccagaatatttaagga----------------actaaataagcaacccaataag
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58308547 72 + 146850525 ataaatttatatctgataaggatctgataagtacccagaatatttaagga----------------actaaataagcaacccaataag
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53234488 45 + 139301422 at---------------------------tgtacccagaatatttaagga----------------actaaataagcaacccaataag
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       7357 45 +    110629 aa---------------------------tgcacccggggtatttaaaga----------------actaaataaacaacccaataaa
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2745999 45 +  10880647 at---------------------------tgcacctgggatgtttaaaga----------------actaaataagcaacccaataaa
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21548357 38 -  23169006 ac---------------------------tcttacaactccat-----------------------attaagaaaataacccaattaa
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4220384 61 -   9676502 at---------------------------tgtatctggaatatttaaagaattattacagcttcatattaagcaaacaacccaatcaa
i speTri2.JH393342         I 155 C 0
s loxAfr3.scaffold_20      28045095 45 -  46401353 ---------------------------aatgtatcctgaatatctaaaca----------------gctcttaaaactacataataag
i loxAfr3.scaffold_20      C 0 I 21
s triMan1.JH594629         10393815 45 +  24341844 ---------------------------aatgtatcctgaatatttaaaca----------------actcttaaaactgcataataaG
i triMan1.JH594629         C 0 I 992
s dasNov3.JH567436          1561676 45 -   2788317 ---------------------------cctataaccagaatatttaaaga----------------acttctttagttccacaataag
i dasNov3.JH567436         C 0 I 21
e equCab2.chr15            84378562 12 +  91571448 I
e pteAle1.KB030580         19643488 17 -  23789964 I
e cerSim1.JH767782          7117496 22 -  14545593 I
e orcOrc1.KB316907         11148200 16 +  17242564 I

a score=337290.000000
s hg38.chr8_KI270814v1_alt    13934 78 +    141812 caga-cggcaaaagacttgaatcgaca-ttttatcaaa-aaagatatataaatggaaagt-aagcttatgaaaagatatact--
s panTro4.chr8             54954949 78 + 143986469 caga-cggcaaaagacttgaatcgaca-ttttatcaaa-aaagatatataaatggaaagt-aagcttatgaaaagatatact--
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58993211 78 + 153482349 caga-cggcaaaagacttgaatcgaca-ttttatcaaa-aaagatatataaatggaaagt-aagcatatgaaaagatatact--
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48084891 78 + 100215132 caga-cggcaaaagacttgaatcaaca-ttttatcaaa-aaagatatataaatgcaaagt-aagcatatgaaaagatatact--
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61635712 78 + 150158102 caga-gggcaaaagacttgaatcgaca-ttttatcaaa-aaagatatatgaatgcaaagt-aagcatatgaaaagatatact--
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58308619 78 + 146850525 caga-gggcaaaagacttgaatcgaca-ttttatcaaa-aaagatatatgaatgcaaagt-aagcatatgaaaagatatact--
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53234533 78 + 139301422 caga-gggcaaaagacttgaattgaca-ttttatcaaa-aaagatatatgaatgcaaagt-aagcatatgaaaagatatact--
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       7402 80 +    110629 caaaggggcaaaagacttgaatagacatttttttcaaa-aaagacatataaatgcaaagt-aagcatatgaaaagatgtact--
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2746044 79 +  10880647 caaaggggcaaaagacttgaatagacatttttttcaaa-aaagagatataaatgcaaagt--agcacataaaaagatgtact--
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21548395 78 -  23169006 gaaaggggcaaaagatttgaa-caaca-tttcatcaggtaaagatatataaatgcaaatttaagcatatgaaaaga--tact--
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4220445 77 -   9676502 gaaaggggcaaaaggtttgaatagaca-tgtcataaga-aaagataaacaaatgcaacat-aagcatatgattaca--tact--
i speTri2.JH393342         C 0 C 0
s loxAfr3.scaffold_20      28045161 78 -  46401353 -aaatgggcaaaagatttgaacagaca-ttccatcaaa-gaaggtatacaaatgccaaaa-aaaaaagagaaaaga--tattct
i loxAfr3.scaffold_20      I 21 I 657
s dasNov3.JH567436          1561742 74 -   2788317 -aaatgggccacagatttga--agata-cttcatcaga-gaagatgtacaaatgcaaaat-aggcacttgaaaaga--tgct--
i dasNov3.JH567436         I 21 C 0
e equCab2.chr15            84378562 12 +  91571448 I
e triMan1.JH594629         10393860 992 +  24341844 I
e pteAle1.KB030580         19643488 17 -  23789964 I
e cerSim1.JH767782          7117496 22 -  14545593 I
e orcOrc1.KB316907         11148200 16 +  17242564 I

a score=7422.000000
s hg38.chr8_KI270814v1_alt    14012 3 +    141812 cag
s panTro4.chr8             54955027 3 + 143986469 cag
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58993289 3 + 153482349 cag
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48084969 3 + 100215132 cag
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61635790 3 + 150158102 cag
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58308697 3 + 146850525 cag
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53234611 3 + 139301422 cag
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       7482 3 +    110629 caa
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2746123 3 +  10880647 caa
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21548473 2 -  23169006 ca-
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4220522 3 -   9676502 tgg
i speTri2.JH393342         C 0 C 0
s dasNov3.JH567436          1561816 3 -   2788317 caa
i dasNov3.JH567436         C 0 C 0
e equCab2.chr15            84378562 12 +  91571448 I
e triMan1.JH594629         10393860 992 +  24341844 I
e loxAfr3.scaffold_20      28045239 657 -  46401353 I
e pteAle1.KB030580         19643488 17 -  23789964 I
e cerSim1.JH767782          7117496 22 -  14545593 I
e orcOrc1.KB316907         11148200 16 +  17242564 I

a score=10131.000000
s hg38.chr8_KI270814v1_alt    14015 2 +    141812 ca
s panTro4.chr8             54955030 2 + 143986469 ca
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58993292 2 + 153482349 ca
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48084972 2 + 100215132 ca
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61635793 2 + 150158102 ca
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58308700 2 + 146850525 ca
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53234614 2 + 139301422 ca
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       7485 2 +    110629 ca
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2746126 2 +  10880647 ca
i saiBol1.JH378179         C 0 C 0
s speTri2.JH393342          4220525 2 -   9676502 ga
i speTri2.JH393342         C 0 C 0
s triMan1.JH594629         10394852 2 +  24341844 ca
i triMan1.JH594629         I 992 C 0
s dasNov3.JH567436          1561819 2 -   2788317 ca
i dasNov3.JH567436         C 0 C 0
e equCab2.chr15            84378562 12 +  91571448 I
e loxAfr3.scaffold_20      28045239 657 -  46401353 I
e pteAle1.KB030580         19643488 17 -  23789964 I
e cerSim1.JH767782          7117496 22 -  14545593 I
e orcOrc1.KB316907         11148200 16 +  17242564 I
e otoGar3.GL873541         21548475 0 -  23169006 C

a score=667938.000000
s hg38.chr8_KI270814v1_alt    14017 157 +    141812 ccatta-gtgattggcaaaatgcaaa-tagaaacgaaagtgagataccacttcacatccagaaagagtggcagt-------------------accaagt-gtgggtgatgctgt-gggaaagtggaaccctcacatgttgctggtgggaatacaaaatggagcagccactgagggaaag
s panTro4.chr8             54955032 157 + 143986469 ccgtta-gtgattggcaaaatgcaaa-tagaaacgaaagtgagataccacttcacatccagaaagagtggcagt-------------------accaagt-gtgggtgatgctgt-gggaaagtggaaccctcacatgttgctggtgggaatacaaaatggggcagccactgagggaaag
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58993294 157 + 153482349 tcatta-gtgattggcaaaatgcaaa-tagaaacgacagtgagataccacttcacacccagaaagagtggcagt-------------------accaagt-gtgggtgatgctgt-gggaaagtggaaccctcacatgttgctggtgggaatacaaaatggggcagccactgagggaaaG
i ponAbe2.chr8             C 0 I 3
s nomLeu3.chr16            48084974 157 + 100215132 tcatta-gtgactggcaaaatgcaaa-tagaaacgacagtgagataccacttcacacccagaaagagtggcagt-------------------accaagt-gtgggtgatgctgt-gggaaagtggaaccctcacaagttgctggtgggaatacaaaatggggcagccactgagggaaag
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61635795 144 + 150158102 ccatta-gtgattggcaaaatgcaaa-tagaaactacagtgagataccacttcacacccagaaagagtggcagt-------------------accaagt-gtgggtgatgctgt-ggg-------------cacatgttgctggtgggaatagaaaatggggcagccactgagggaaag
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58308702 144 + 146850525 ccatta-gtgattggcaaaatgcaaa-tagaaactacagtgagataccacttcacacccagaaagagtggcagt-------------------accaagt-gtgggtgatgctgt-ggg-------------cacatgttgctggtgggaatagaaaatggggcagccactgagggaaag
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53234616 144 + 139301422 ccatta-gtgattggcaaaatgcaaa-tagaaactacagtgagataccacttcacacccagaaagagtggcagt-------------------accaagt-gtgggtgatgctgt-ggg-------------cacatgttgctggtgggaatacaaaatggagcagccactgagggaaaa
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       7487 157 +    110629 ccgtta-gtgattagcaaaatgcaaa-tagaaactacagtgagataccactggacacccacaaagagcagcagt-------------------agtacgc-gtgggggacgctgt-gggaaagtggaaccctcacatgttgctgatgagaataccaaacggggcagccactgagggatcg
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2746128 157 +  10880647 ccatta-gtaattatcaaaatgcaaa-tagaaactacagtgagataccacttgacacccaaaaagagcagcagt-------------------accacgt-gtgggggatgctgt-gggaaagtggaaccctcacatgttgctgatgagaataccaagtggggcagccactgagggatcg
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21548475 171 -  23169006 -catta-gtccttagggaagtgcctg-ta-aaactctggtgagataccgcttaccactcaccaacagtggcgacagggagtgaccactcaccaaccaggt-gc-agtgacatgtg-gaggaggtgggaccctcatag--tgctggtgggaatgtaaaagggggcagccacggagggaaag
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4220527 123 -   9676502 tcattg-gt------caaa---caaa-ttaaaaccacagcaagataccactttacagtccctaaga---------------------------agcaggt-gtggtgatcacaca-gagaaaacaggac-----------------aggaaggtataatggggcagcccaagaggggaag
i speTri2.JH393342         C 0 C 0
s loxAfr3.scaffold_20      28045896 155 -  46401353 Ccattt-gtcattagggaaatgcaaa-ttaaaacagcaatgagataccactacatacccacaaaaactggcaat-------------------atcaagt-gttagtgaggatgt--gaaaattggaa-cttcacacgttgttagtgggaatgtgaaatggcacaaccactttaggaagc
i loxAfr3.scaffold_20      I 657 C 0
s triMan1.JH594629         10394854 155 +  24341844 ccattc-atcattagggaaatgcaaa-ttaaaacaacaatgagataccgctacacacccac-aagacgggcaat-------------------accacgt-gtaagtgaggatgt--gcaaatcagaaccttcacacactggtagtgggaatgtaagatggcacaaccactttaggaagc
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436          1561821 161 -   2788317 tcatttggtcataagggaaatgcacatttaaaaccacagtgagataccactgcacacccagaaatactgacatt-------------------ggtgagtcattggtgagaatgtggggaaattgaaacctgcacacattgctattgggactgtaaaattatatggccactttgacaaac
i dasNov3.JH567436         C 0 C 0
e equCab2.chr15            84378562  12 +  91571448 I
e pteAle1.KB030580         19643488  17 -  23789964 I
e cerSim1.JH767782          7117496  22 -  14545593 I
e orcOrc1.KB316907         11148200  16 +  17242564 I

a score=1621406.000000
s hg38.chr8_KI270814v1_alt    14174 453 +    141812 agttt-gtagtt-tcttaaaaagttaaacttttacttaccataaaacctagt-attctactccaaaataaatggaaacatatcctcatgaag--acttgtatgtgaatggtta-tggcagtattg----ttcataatagcccaaattg--gaaacaacccaaatgttcatcagcta---------tgagt-gaactgtggtacatcca-cacagtggaatactagtgaaca-gtgacaaggaatgtgccacgtgccacaacatggataaatgctcaactccacatgctgagtgaaagaagctagacac--aagact--agtt----tatatgatcccatttatatgaaatttctacaaatgacaaaacta--gtgacagcaag---taagtcagtggctgcccaggggctagaggtaggagacaggattaa--------ctgcggatgggaatgaaggaact--ttt-------ggggtga-tgggaggattctaaacttggactgca
s panTro4.chr8             54955189 453 + 143986469 agttt-gtagtt-tcttaaaaagttaaacttttacttaccataaaacctagt-attctactccaaaataaatggaaacatatcctcatgaag--acttgtatgtgaatggtta-tggcagtattg----ttcataatagcccaaattg--gaaacaacccaaatgttcgtcagctg---------tgagt-gaactgtggtacatcca-cacagtggaatactagtgaaca-gtgacaaggaatgtgccacgtgccacaacatggataaatgctcaactccacatgctgagtgaaagaagctagacac--aagact--agtt----tatatgatcccatttatatgaaatttctacagatgacaaaacta--gtgacagcaag---taagtcagtggctgcccaggggctagaggtaggagagaggattaa--------ctgtggatgggaatgaaggaact--ttt-------ggggtga-tgggaggattctaaacctggactgca
i panTro4.chr8             C 0 C 0
s nomLeu3.chr16            48085131 453 + 100215132 agttc-gtggtt-tcttaaaaagttaaacttctacttaccataaaaccgagt-attctactccaaaataaatggaaacatatcctcatggag--acttgtatgtgaatggtta-tggcagtattg----ttcataatagcccaaactg--gaaacaacccaaaggttcgtcagcca---------tgagt-gaactgtggtatatcca-cacagtggaatactattgaaca-gtgacaaggaatgtgccacgtgccacaacatggataaatgctcaactccacatgctgagtgaaagaagctagacac--aagact--agtt----tatatgatcccatttatatgaaatttctacaaatgacaaaacta--gtgacagcaag---taagtcagtggctgcccaggggctagaaataggagtgaggattaa--------ctgtggatgggaatgaagggact--ttt-------ggggtga-tgggaggattctaaacctggactgca
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61635939 463 + 150158102 agttt-gtagtt-tcttaaaaagttaaacttttacttaccataaaacctagt-attctaccccaaaataaatggaaacatatcctcatggac--acttgtatgtgaatggtta-tggcagtggtg----ttcataatggcccaaattg--gaaacaatccaaatgttcgtcagccg---------tgagt-gaaccgtggtacatcca-cacagtggaatactattgaaca-gtgtgaaggaatgtgccaagtgccacaacatagataaatgctcaaattcacatgctgagtgaaagaagctagacacaaaagact--agtt----tatatgattccatttatatgaaatttctacaaatgacgaaacta--gtggcagcaag---taagtcaatggctgcccaggggctagagataggagtgaggattactcctatctctgtggatgggaatgaaggaact--ttt-------ggggtga-tgggaggattctaaacatggactgca
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58308846 455 + 146850525 agttt-gtagtt-tcttaaaaagttaaacttttacttaccataaaacctagt-attctaccccaaaataaatggaaacatatcctcatggac--acttgtatgtgaatggtta-tggcagtggtg----ttcataatggcccaaattg--gaaacaacccaaatgttcatcagccg---------tgagt-gaaccgtggtacatcca-cacagtggaatactattgaaca-gtgtgaaggaatgtgccaagtgccacaacatagataaatgctcaaattcacatgctgagtgaaagaagctagacacaaaagact--agtt----tatatgattccatttatatgaaatttctacaaatgacgaaacta--gtggcagcaag---taagtcaatggctgcccaggggctagagataggagtgaggattaa--------ctgtggatgggaatgaaggaact--ttt-------ggggtga-tgggaggattctaaacatggactgca
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53234760 455 + 139301422 agttt-gtagtt-tcttaaaaagttaaacttttacttaccataaaacctagt-attctaccccaaaataaatagaaacatatcctcatggac--acttgtatgtgaatggtta-tggcagtggtg----ttcataatggcccaaactg--gaaacaacccaaatgttcgtcagccg---------tgagt-gaaccatgatacatcca-cacagtggaatactattgaaca-gtgtgaaggaatgtgccaagtgccacaacatagataaatgctcaaatccacgtgctgagtgaaagaagctagacacaaaagact--agtt----tatatgattccatttataagaaatttctacaaatgacgaaacta--gtgacagcaag---taagtcaatggctgcccaggggctagagataggagtgaggattaa--------ctgtggatgggaatgaaggaact--ttt-------ggggtga-tgggaggattctaaacatagactgca
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       7644 449 +    110629 agttt-gtagtt-tcttaaaaagtta------tacttaccatcaaacctagt-attcttctccaaaataaatggaagcatatcctcatggat--acttgtttgtgaatgctta-tggcagaattg----ttcataatagcccaaactg--gaaacaacccaac-gtttgtcagctg---------tgagt-aagctgtggtatatcca-cacagtggaatactactgaaca-gtgacaaggaatgtgccgcgtgccacaacatggataaatgcgcaaatccacatgctgagtgaaagaagctagacacaaaagact--agtt----tatatgatcccatttatatgaaattttgacaaatggcaaaacta--gtgatagcacg---ttagtcagtgactgcccaggggctaggaatgggagagaaggctaa--------cagccgttggg-atgaaggaacttatat-------ggggtga-tgggaggattctaagcctggactgca
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2746285 450 +  10880647 agttt-gtagtt-tcttaaaaagtta------tacttaccatgaaacctagt-attctactccaaaataaatggaagcatatcctcatggat--acttgtttgtgaatgctta-tggcagaattg----ttcataatagcccaaattg--gaaacaacccaactgtttgtcagctg---------tgagt-aaactgtggtacaccca-cacagtggaatactattaaaca-gtgacaaggaatgtgccacatgcc---acatggataaatgcacaaatccacatgctgagtgaaagaagcttgacacaaaagact--agtttatatatatgatcccatttatgtgaaatttcgacaaatggcaaaacta--gtgacagcaag---ttagtcagtggctgcccaggggctagggattggagagaaggctaa--------ctgtggatggg-atgaaggaact--ttt-------ggggtgattgggaggattctaagcctggactgca
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21548646 424 -  23169006 agtttggcagtt---ttaaaaagttaaacatatactta-cataa----cagtaattttactctaagaaaaatggaaacatattgacgtggac--act----tgtgagtgttta-tagccagattg----ttcatcagagctt-----------ccaacagacatgttcatcagc-----------------------tggtatgttgc-caggagggcacccca---agca-gtgacaaggaacatgctgtgtgccataacatgggtcagtctcagaaactgcatgctcagtgggaaaagc-aggccccaaagcctgcagct----gataggagcccgcttatatgatgtttctgcaaaaggcgaaattc--tgtgtacaaagggttgagtcagtgcttg-ctaggggct-ggggtgagagtgaggattga--------tggcagatgggcatgagagaactt-ttt-------ggggtga-tggatagattctaaaactagactatg
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4220650 417 -   9676502 agtttggcagtttttttaaaaaattaagcacatatttatcatacagttgagtaattctgctcccacagagacaaaaacatatccacatagat--gctcgtgtgtgcatgttcagtagccgttgtgtgcattcacaatagcccaaattg--gaaacaacccagacgtGCA-----------------------------GGTCTTTCCATCTGGGCAGAGCGCTGCTGGTCA-GTGAGCAGGAGCCtgctac--------acacggatggctcctagaaccttcatgctgagtggaagaa------cac----------aggc----ca---gagcccacgtgtgcggagtttctacaaaagg-aagactg--taatgaaagag---gaaattagtggttg--------ctggagcttgcattgaggattga--------ctgaaaatggaaatgagggaatt--tgtgggggcgggggtga-tggaaggattcttaaaccgaact-ta
i speTri2.JH393342         C 0 C 0
s loxAfr3.scaffold_20      28046051 468 -  46401353 agtttgacagtt-tcttaaaaagttaaacagacacgcagcaggtaacccagcaattctactccagtagaaataaaaacatacattcatacgagcacttgtgtgtgaatgctta-tagaaatgtaa----tgcatagtagcccaaatt---gaaataacccaaatgtccatcggctggttcatagagaaataaaaatgtgttaaatctg-taaaatggactactactgagca-atgaaaaggaacatgctacacgccaca----acgtaaatgtcaaacccagcatgctaagtaaaagaaaccagacacaaaagaatgtaatt----tgtgtgatctctttgaaatgaaatttctagaaaaggcaaagctgtcactacaggaag---caaatccgtggttg-ccgggggctgggaatgggagctagcgtcga--------ctgctgatgagaatgaaggaattt-ttt-------ggagtga-tggaagtattctaaaactgcgttgtg
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10395009 450 +  24341844 agtttggcagtt-tcttaaaaagttaaacatacatccatcatataacacagcaattctacttttatagaaataaaagcatatgttcatacgagcacttgtgtgtgaatgctt-----------------------gtagtccaaattggagaaacaatccaaaggtccatcagctgtttaataggtaaac-aaaatgtggtaaatcca-tacagtggaatactactgagca-atgaaaaggaacatgctacatgccaca----gcatcaatctcaaacccatcatacaaggtaaaagaagccagacacaaaagatggtaatt----tgtataatctcatttaaatgaaa-ttctagaaaaggaaaaactgtcgtgataggaag---cagatcagtggttg-ccaggggctgggaatgggagc-agcatgga--------ctgctcatgggagtgaaggaactt-tgg-------ggagtga-tggaagtattctaaagctgggttgtg
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436          1561982 444 -   2788317 catttggcagtt-tcttaaaaaggtaagtatatacttgccatatagttcagcaattctgc---aagagaaatgaaaacatatgttcatataa--acgtgcatttgagtactca-tagtagtagta----ttcgtggtagcccaaattg--gaaacaatccaaatatccatcagctggtgaatagataaac-aaaatgtgctatattca-tatcattgaatactgtagaggatatgaaaaggaatatgctacaaaaca-------ggtaaatcccaaaaagtgcatgccaagttcaagaagccagacactaaagactgcattt----tgtaggatcctatttacatgaaatttccagataaggcaaaactgtagtgacagaaag---caaatcagtggttg-ctgtgggt--gagatgaaagtgaggcttga--------ctgcaaatggaaatgagggatctt-tgg-------gaggtga-tagaa---------------gttgtg
i dasNov3.JH567436         C 0 C 0
e equCab2.chr15            84378562  12 +  91571448 I
e pteAle1.KB030580         19643488  17 -  23789964 I
e cerSim1.JH767782          7117496  22 -  14545593 I
e orcOrc1.KB316907         11148200  16 +  17242564 I
e ponAbe2.chr8             58993451   3 + 153482349 I

a score=4005.000000
s hg38.chr8_KI270814v1_alt    14627 1 +    141812 g
s panTro4.chr8             54955642 1 + 143986469 g
i panTro4.chr8             C 0 C 0
s nomLeu3.chr16            48085584 1 + 100215132 g
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61636402 1 + 150158102 a
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58309301 1 + 146850525 a
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53235215 1 + 139301422 a
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       8093 1 +    110629 g
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2746735 1 +  10880647 g
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21549070 1 -  23169006 g
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4221067 1 -   9676502 a
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907         11148216 1 +  17242564 g
i orcOrc1.KB316907         I 16 C 0
s equCab2.chr15            84378574 1 +  91571448 g
i equCab2.chr15            I 12 C 0
s pteAle1.KB030580         19643505 1 -  23789964 g
i pteAle1.KB030580         I 17 C 0
s loxAfr3.scaffold_20      28046519 1 -  46401353 a
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10395459 1 +  24341844 a
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436          1562426 1 -   2788317 g
i dasNov3.JH567436         C 0 C 0
e cerSim1.JH767782          7117496 22 -  14545593 I
e ponAbe2.chr8             58993451 3 + 153482349 I

a score=1006588.000000
s hg38.chr8_KI270814v1_alt    14628 181 +    141812 -------------------tgtcaattcactaaaacacattgagttgtacacttaaattaggtgagttttatgacatgtaaa--tctacct---tgaagctg---aAGAATA------------------------------------AAAGATAAATATTATAAAGGGAGATGT-AACGAGGAATATCAGT-----ACTAAAATAAAATTGAGGCACAG-CTTGAATG---TTGGTTTAAGGATTTT--GTATAT
s panTro4.chr8             54955643 181 + 143986469 -------------------tgtcaattcactaaaacacattgagttgtacacttaaattaggtgagttttatgacatgtaaa--tctacct---tgaagctg---aAGAATA------------------------------------AAAGATAAATATTATAAAGGGAGATGT-AACGAGGAATATCAGT-----ACTAAAATAAAATTGAGGCACAG-CTTGAATG---TTGGTTTAAGGATTTT--GTATAT
i panTro4.chr8             C 0 C 0
s nomLeu3.chr16            48085585 181 + 100215132 -------------------tgtcaattcactaaaacacattgagttgtacacttaaattaggtgagttttatgacatgtaag--tctacct---tgaagctg---aAGAATA------------------------------------AAAGATAAATATTATAAAGGGAGATGT-AATGAGGAATATCAGT-----ACTAAAATAAAACTGAGGCACAG-CTTGAATG---TTGGTTTAAGGATTTT--GTATAT
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61636403 181 + 150158102 -------------------tgtcaattcactaaaacacgttgagttgtacacttaaattaagtgagttttatgacatgtaaa--tctacct---tgaagctg---aAGaata------------------------------------aaaaataaatattataaGGGGAGATAT-AATGAGGAATGTCAGT-----ACTAAAATAAAATTGAGGCACAG-CTTGAACG---TTGGTTTAAGGATTTT--GTATAT
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58309302 181 + 146850525 -------------------tgtcaattcactaaaacacgttgagttgtacacttaaattaagtgagttttatgacatgtaaa--tctacct---tgaagctg---aAGAATA------------------------------------AAAAATAAATATTATAAGGGGAGATAT-AATGAGGAATGTCAGT-----ACTAAAATAAAATTGAGGCACAG-CTTGAACG---TTGGTTTAAGGATTTT--GTATAT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53235216 173 + 139301422 -------------------tgtcaattcactaaaacacgttgagttgtacacttaaattaagtgagttttatgacatgtaaa--tctacct---tgaagctg---aAGAATA------------------------------------AAAAATAAATATTATAAGGGGAGATGT-AATGAGGAATGTCAGT-----ACTAAAATAAAATTGAGGCACAG-CTTGAACG---TTGGTTTAAGGAT----------T
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       8094 171 +    110629 -------------------tgtacattcactaaaacacattgagttgtacacttaaattaggtgagttctatggcatgtaaa--tctacct---tcatgctg---aAGAATA------------------------------------------AAACATTCTAAGGGGAGATGT-AATGAGGAAAATCAAC-----GCTA----AAAATTGAGGCACAG-CTTGAACG---TTACTTTAAGGATTTT--GTATAT
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2746736 171 +  10880647 -------------------tgtacattcactgaaacacattgagttgtacacttaaattaggtgagttctatggcatgtaaa--tctacct---TCATGTTG---AAGAATA------------------------------------------AAACATTATAAGGGGAGATGT-AATGAGGAAAATAAAT-----ACTA----AAAATTGAGGCACAG-CTTGAATG---TTGCTTTAAGGATGTT--GTATAT
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21549071 170 -  23169006 -------------------tgtaaattcactaaaatgcattgaattgtacactgac-----gtgagttttatgacgtataaatttttactt---caaagctatttaaaaTTA-----------------------------------------TAAACATTATAAAGAGAAATAT-GAGAAGGAAAATCAAT-----ATTAAAATAGAG-------ACAGTTTTGAAAA---TTGATTTAAGAATTTT--ATACAT
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4221068 205 -   9676502 -------------------ggtaaatttactaaaatccattgaatt-taca---------------ttttatgacatgtaaa-ttttacctcagtaaagcag---atGAGAGGCCCTGGGTTCCTGCCCCAGTCCCTGCCTCCCCAACAAAAATGAGCATTATAAAGGGAATTAC-ATACAGAAAGATGAAT-----ATT-----AAAATTGAGGTACCA-TTTGGAAATGTTTGTTTTAAGGATTTTTAAAATAT
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907         11148217 178 +  17242564 -------------------tataaattcactaaaattcattgaattgtacacttaaattaggtgag-ttgatggcacataaa-ttttacttcaataaagcta---ttaaaaa------------------------------------gattaaaaaaattgTAAAGGGAGGTGC-AAGAAGGCGGATCAGT-----CTTAAAGTAGCG------TGCTT-TCTGAGAG---TTGGTTCAAGAGTTTT--GTATAT
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84378575 174 +  91571448 -------------------tataaattcactaaaacttgctgatttgtacatttaaattagatgagttttatggcatgtaaa-ttttacttcaatagagctg---ttaaaaa----------------------------------------GAAAACATTATAAAG-GAAGCGC-AAGAAGGAAGATCAGT-----AATAAAATAGCA------CACTT-TTTGAAGG---TTGGTTTAAGGATTTT--GTATAT
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7117518 174 -  14545593 -------------------tataaattcactaaaacttgttgaattgtacacttaaatcaggtgagttttatggcgtgtaaa-ttttacttcaataaagctg---ttaaaaa----------------------------------------GATAGTATTATAAAG-GAAGTGC-AAGAAGGAAGATCAGT-----ATTAAAATAGCA------CACGT-TTTGAAGG---TTGGTTTAAGGATTTT--GTATAT
i cerSim1.JH767782         I 22 C 0
s pteAle1.KB030580         19643506 180 -  23789964 -------------------tataaattcactaaaattcatcgacctct-tacttaaattaggt--gttttatggcatgtaaa-ctttacttcagtaaagctg---ttaaaaa------------------------------------CA-CAAGAGCATTATAAAGAGAAATGC-AAGGAGGAAGATCAATATTAAAATAAAATAGCA------TACTT-TTTGAAAG---TTGGTTTAGGGAGTTT--GTATAT
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20      28046520 198 -  46401353 tgttggttgcaaaattgactgtaaattcactaagattcattgaattgtacactcaaattaggtgaattttttggcatagaaa-ctttacctccataaaactg---ttaaaaa------------------------------------aA--GATAAAAGCATAAATGGAAGTAT-AAGAAGTAGGATCGAT-----ATTGAAATAA-----AGGCTCACTTTTGGAAG---TTGGTTTAAGGATTTT--ATACAT
i loxAfr3.scaffold_20      C 0 I 225
s triMan1.JH594629         10395460 203 +  24341844 tgttggttgcaaaattgactgtaaattcactaagattcattgaattgtacactcaaattaggtgaattttttgacatgtaaa-ttttacctcaataaaactg---ttaaaaa------------------------------------aA--GATAAAAACATAAAGGGAAGTGT-AAGAAGTAGGATTAGT-----ATTAAAATAAAAGAGAGGCTCACTTTTGTAAG---TTGGTTTAAGGATTTT--ATACAT
i triMan1.JH594629         C 0 I 225
s dasNov3.JH567436          1562427 191 -   2788317 tgttagttgcaaa----actataaattcaccaaatctcattgaagtgtacacttaaattaggtgaattttatggcatgtaac-ttttccttcaataaggctg---ttaaaaa------------------------------------aG-----AACATCTTAAAGGGAAGTATCAAGAAGAAGGATTG----------TAAATAA-AAATAGTCACACTTTTAAAAA---TTGACTTCAAGATTTT--GTGTAT
i dasNov3.JH567436         C 0 C 0
e ponAbe2.chr8             58993451   3 + 153482349 I

a score=344492.000000
s hg38.chr8_KI270814v1_alt    14809 41 +    141812 TTGCTCATTTAAGCAAATGTATAGATGTTTATATGCATCTG
s panTro4.chr8             54955824 41 + 143986469 TTGCTCATTTAAGCAAATGTATAGAGGTTTATATGCATCTG
i panTro4.chr8             C 0 C 0
s nomLeu3.chr16            48085766 41 + 100215132 TTGCTCATTTAAGCAAATGTATAGATGTTTATATGCATCTG
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61636584 41 + 150158102 TTGCTCATTTAAGCAAATGTATAGATGTTTATATGCATCTG
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58309483 41 + 146850525 TTGCTCATTTAAGCAAATGTATAGATGTTTATATGCATCTG
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53235389 41 + 139301422 TTGCTCATTTAAGCAAATGTATAGATGTTTATATGCATCTG
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       8265 41 +    110629 TTGCTCATTTAAGCAAATGTATAAATGTTTATATGCGTCTG
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2746907 41 +  10880647 TTGCTCATTTAAGCAAATGTATAAATGTTTATATGCGTCTG
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21549241 41 -  23169006 ATTCTCATTTAAGAAGATTTATAGATGTTCATGTGAATCtg
i otoGar3.GL873541         C 0 I 429
s speTri2.JH393342          4221273 41 -   9676502 TTTCTCATTTTAGCAAATTTAGAAATGTTTATGGGCATCCA
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907         11148395 41 +  17242564 TTTCTCACTTAGGCAAATTTATAGATGTTCAGATGCATCCA
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84378749 41 +  91571448 TTTCTCACTTAGGAAAATTTGTGGATGTTTGTATGCATCCA
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7117692 41 -  14545593 TTTCTCATTTAAGAAAACTTATAGATGTTCATAAGCATCCA
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19643686 41 -  23789964 TTTCTCATTTCAGCAAATTTATAGATGTTCCCATGCACCCA
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20      28046943 41 -  46401353 TTTTTCGTTTAGGCAAATTTATAGATGCTTATGTGTAACCA
i loxAfr3.scaffold_20      I 225 C 0
s triMan1.JH594629         10395888 41 +  24341844 TTTTTCATTTAGGCAAATTTATAGATGTTCATGTGTAAACA
i triMan1.JH594629         I 225 C 0
s dasNov3.JH567436          1562618 41 -   2788317 TTTCTCTTGTAGGCAAATTTGTCCATGTTTATGTGCAACCA
i dasNov3.JH567436         C 0 C 0
e ponAbe2.chr8             58993451  3 + 153482349 I

a score=400398.000000
s hg38.chr8_KI270814v1_alt    14850 49 +    141812 TAT-TTTTTTGAGTTTAATTTTAAGAATGAAGGATCAAAAGGAACATTGA
s panTro4.chr8             54955865 49 + 143986469 TAT-TTTTTTGAGTTTAATTTTAAGAATGAGGGATCAAAAGGAACATTGA
i panTro4.chr8             C 0 C 0
s nomLeu3.chr16            48085807 49 + 100215132 TAT-TTTTTTGGGTTTAATTTTAAGAATGAAGGATCAAAAGGAACATTGA
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61636625 49 + 150158102 TAT-TTTTTTGAGTTTAATTTTAAGAATGAAGGATCAAAAGGAAAACTGA
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58309524 49 + 146850525 TAT-TTTTTTGAGTTTAATTTTAAGAATGAAGGATCAAAAGGAAAACTGA
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53235430 49 + 139301422 TAT-TTTTTTGAGTTTAATTTTAAGAATGAAGGATCAAAAGGAACACTGA
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       8306 40 +    110629 CAT-CTTTTTGAG---------AAGAATGAAGGATTGAAAGGAACACTGA
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2746948 40 +  10880647 CAT-CTTTCTGAG---------AAGAATGAAGGATCAAAAGGAACACTGA
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21549711 49 -  23169006 TGT-TTTTTTGAGTTTAATTGTAAGAAGAAAGAGTCAAAAAGAACATTGA
i otoGar3.GL873541         I 429 C 0
s speTri2.JH393342          4221314 50 -   9676502 CATATTTCCTGAATTTAGTTATAAGAATGAAGGGTCAAAAATAATATTGA
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907         11148436 49 +  17242564 CGT-TTTCTTGAGTTTAGTTATAAGAATGAAGGGTTAAAAGGAACATTGA
i orcOrc1.KB316907         C 0 I 3
s equCab2.chr15            84378790 49 +  91571448 CAC-TTTTCTGAGTTTAGTTATAAGAATGAAGGGTCAAAAGGAACATTGA
i equCab2.chr15            C 0 I 264
s cerSim1.JH767782          7117733 49 -  14545593 CAC-TTTTCTGAGTTTAGTTGTAAGAATGAAGGGTCAAAAGGAACATTGC
i cerSim1.JH767782         C 0 I 3
s pteAle1.KB030580         19643727 47 -  23789964 CAT-TTTTCTGAGTTGAGTTAT--GAGCGAAGGGCCAAAAGGAACATCGA
i pteAle1.KB030580         C 0 I 3
s loxAfr3.scaffold_20      28046984 49 -  46401353 CAT-ATTTCTGGGTTTAGTTATAAGAATGAAGTATTGAAAGGAATGTTGA
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10395929 49 +  24341844 CAT-TTTTCCGAGTTTAGTTATAAGAGTAAAGGATTGAAAGGAATATTGA
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436          1562659 49 -   2788317 CAT-TTTCTGAGTTTTAGTTACAGGAATGAAGGGTCAAAAGAAACATTGA
i dasNov3.JH567436         C 0 C 0
e ponAbe2.chr8             58993451  3 + 153482349 I

a score=-21109.000000
s hg38.chr8_KI270814v1_alt    14899 11 +    141812 CCTTCAAAAGA---------
s panTro4.chr8             54955914 11 + 143986469 CCTTCAAAAGA---------
i panTro4.chr8             C 0 C 0
s nomLeu3.chr16            48085856 11 + 100215132 CCTTCAAAAGA---------
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61636674 11 + 150158102 CCTTCAAAAGA---------
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58309573 11 + 146850525 CCTTCAAAAGA---------
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53235479 11 + 139301422 CCTTCAAAAGA---------
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       8346 11 +    110629 CCTTCAAAAGA---------
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2746988 11 +  10880647 CCTTCAAAAGA---------
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21549760  6 -  23169006 CCTTCA--------------
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4221364  6 -   9676502 CTCTCA--------------
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907         11148488  4 +  17242564 CCTG----------------
i orcOrc1.KB316907         I 3 C 0
s equCab2.chr15            84379103  4 +  91571448 ccta----------------
i equCab2.chr15            I 264 C 0
s cerSim1.JH767782          7117785  4 -  14545593 CCTA----------------
i cerSim1.JH767782         I 3 C 0
s pteAle1.KB030580         19643777  4 -  23789964 CCTA----------------
i pteAle1.KB030580         I 3 C 0
s loxAfr3.scaffold_20      28047033  2 -  46401353 ----------C--------A
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10395978 10 +  24341844 ----------CAAACTTATA
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436          1562708  1 -   2788317 ----------A---------
i dasNov3.JH567436         C 0 C 0
e ponAbe2.chr8             58993451  3 + 153482349 I

a score=936544.000000
s hg38.chr8_KI270814v1_alt    14910 160 +    141812 GGGTGCCCTTGAAGGAAGGAGATGTAGATGTTGAGGGGGAGGCATGATC-----CTTCACATGTTGGAAGGGA------GTA-------------GTTCTTTGGTGTGCTGAGATGGAGT----ACCACCTGATGAAATAAGAAAAGGTAC---A--CATGGCCC---AAGGAAGGATGACCTTAGTTACAGT------GAG
s panTro4.chr8             54955925 160 + 143986469 GGGTGCCCTTGAAGGAAGGAGATGTAGATGTTGAGGGGGAGGCATGATC-----CTTCACATGTTGGAAGGGA------GTA-------------GTTCTTTGGTGTGCTGAGATGGAGT----ACCACCTGATGAAATAAGAAAAGGTAC---A--CATGGCCC---GAGGAAGGATGACCTTAGTTACAGT------GAG
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58993454 159 + 153482349 GGGTGCCCTGGAAGGAAGGAGATGTAGATGTTGAGGGGGA-GCATGATC-----CTTCACATGTTGGAAGGGA------GTA-------------GTTCTTTGGTGTGCTGAGATGGAGT----ACCACCTGATGAAATAAGAAAAGGTAC---G--CATGGCCC---AAGGAAGGATGACCTTAGTTACAGT------GAG
i ponAbe2.chr8             I 3 C 0
s nomLeu3.chr16            48085867 160 + 100215132 GGGTGCCCTCGAAGGAAGGAGATGTAGATGTTGAGAGGGAGGCATGATC-----CTTCACATGTTGGAAGGGA------GTA-------------GTTCTTTGGTGTGCTGAGATGGAGT----ACCACCTGATGAAATAAGAAAAGGTAC---A--CATGGTCC---GAGGAAGGATGACCTTAGTTACAGT------GAG
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61636685 159 + 150158102 GGGTGCCCTTGAAGGAAGGAGATGTAGATGTTGAGGGAGA-GGATGATC-----CTTCACATGTTGGAAGGGA------GTA-------------GTTCTTTGGTGTGCTGAGATGGAAT----ACCACCCGATGAAATAAGAAAAGGTAC---A--CATGGTCC---AAGGAAGGATAACCTCAGTTACAGT------GAG
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58309584 159 + 146850525 GGGTGCCCTTGAAGGAAGGAGATGTAGATGTTGAGGGAGA-GGATGATC-----CTTCACATGTTGGAAGGGA------GTA-------------GTTCTTTGGTGTGCTGAGATGGAAT----ACCACCCGATGAAATAAGAAAAGGTAC---A--CATGGTCC---AAGGAAGGATAACCTCAGTTACAGT------GAG
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53235490 165 + 139301422 GGGTGCTCTTGAAGGAAGGAGATGTAGATGCTGAGGGAGA-GGATGATC-----CTTCACATGTTGGAAGGGA------GTA-------------GTTCTTTGGCGTGCTGAGATGGAAT----ACCACCTGAGGAAATAAGAAAAGGTAC---A--CATGATCC---AAGGAAGGATGACCTCAGTTACAGTTACAGGGAG
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       8357 172 +    110629 GGGTACCCTCGA---AAGGAGATGTAGATGTTGATGGGGAGACATGATCAC--TCTTCAGATGTTGGAAGGAA------GTA----GATACCCTTGTTCTTCGGTACTCTAAGATGGAAT----ACTGCCCAACGAAATATGAAAAGGTGC---C--TATGGCACTGTAACTGAGGATGACCTCAGTTACAGT------GAG
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2746999 169 +  10880647 GGGTGCCCCCGA---AAGGAGATGTAGATGTCGAGAGGGAGACATGATCAC--TCTTCAGATGTTGGAAGGAA------ATA----GATACCCTTGTTCTTCGGTACTCTAAGATGGAAT----ACTGCCCGCCAAAATATGAAAAGGTAC---A--TATGGCCC---AAGGAAGGATGACCTCAGTTACAGT------GAG
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21549766 127 -  23169006 -----------AAGGAAGGAAATCTGAATGTTGAGGGAAAGACATGATAACTTTCTGTAACTGTTTGAATGAT------GTA-------------GATACG------GTTGATATG---------------------------AAAGGCAC---ATTTTTTGTCC---TAGGAAGCATAACCTCTGTAATAAT------GAG
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4221370 165 -   9676502 -----------AAGGGTGGAAACCTAGATGTTAGAGGGGAGACCTGGTAGCACCCATCTAGTGTTGGAAAGGA------GAG----GGTTTGTTTGGGCTTTGGATTACTCAGACAGGATTGG-ATCACTAGTTGAAATGTGAAAAGGCAC---ATTTTTGGTCC---AAGGAAGGATGACCTTGATAACAGT---------
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907         11148492 177 +  17242564 CAGTGCCCTCGAAGGAAGGAAATCTAGGTGTTGAA-GGGGGACGTGAAG-CTGTCTTCAGATGCTTAAAGGGA------GTA----TATGTGCT-GTTCGTAGGAATTCTGAGATGGAATTGGTACCGCTAGGTGAAGTATGAAGATGCAC---ATTTTTGACCC---AAGGAAGGATGGCCTCAGTTACAGT------GAG
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84379107 178 +  91571448 gagtgccctcaaagaaaggaaatctagatgttgaaggggagacatgaag-ttatctttaaatatcgaaaggga------ata----tgtatgct-cttctttggagtgctaagatggaattggtacttctagttgaattatgaagaggcac---gtttttggcac---aaggaaggacaatctcagttatagt------gag
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7117789 178 -  14545593 GAGTGCCCTCAAAGGAAGGAAATCTAGATGTTGAaggggagacatgaag-ctatctttaaatatcgaaaggga------ata----tataggct-gctctttggagcactaagatggaattggtactgctaattgacgtatgaagaggcac---atgtttggtcc---aaagaaggacggcctcggttatagt------gag
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19643781 165 -  23789964 CAGTGTCCTCAGAGGAAGGGAATGCAGATGTTGAA-GGGAGAGCTG-AG-CTATCTGTAAATATCGGAAGGGG------ACA----TGCCTG-T-GTTCTTCGGAGCACTGAAATGGAATTGG-------------ACTTTGAAGAGGCACCTTTTTTTTGGCCC---GAGGAAGGACAGCCTCAGTTATGGG------GAG
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20      28047035 176 -  46401353 GAGTACCCTCAAAGGAA----------ATGTTGAAGGGGAAATAT----ACCTCCTTTAGCTATTGAGAAGGAatatatatatatatatatatGCCTTTTTTGAAGTGTTAACATTgaattggaacctctagatgaaatacaaagaggcac---atatttggctc---aaggaatgatgacctcatttacagt------gag
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10395988 174 +  24341844 GAGtatcctcggaagaa----------acgttgaaggggaaatatcgtagttctctttaggtattgaaaggga------ttatatatatatatgcattttttgaagtgttaacattgaattggaacctctagatgaaatatgaagaggcac---atatttgaccc---aaggaacgatgacctcatttacagt------aag
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436          1562709 175 -   2788317 ---TACCCTCAAAAGAAGAACATCTAGATGTTGAagaggacatataatggctatctttaaatattggtaggga------at-----tatatgcttgttctttggagtgctaggatgaaattgggacctctagatgaaatatgaagaagcac---atatttg-ccc---aaggaaggacagcttcttttacact------gag
i dasNov3.JH567436         C 0 C 0

a score=2094961.000000
s hg38.chr8_KI270814v1_alt    15070 351 +    141812 AATATTTAAC---------------AATGTGATTTGTGGAATATTGCATTTGTCATTGGAAATATATA---AATAGATGCTGAGGGGACATTTTGTTTTGGATGCCGTAGGAGATT---TTGCCAGGTGGCTTCTACATTCTCTTCTGGTGGTCATTCCTAACAAGCCACAGGGGGAGTTGCT--G-AGCCGCCG-ATGTCATCTGTT-------------CAAGAGTGC--C---------TT--------TCCCTTAAATCCATAAAGAA-----------------CTA-AAGAAAATTGAAAAGTTCTATCATTTCAATATTGGTTTTTTCC------------CTTTTCTCTGCC---TTTTATGCCT----TAGTTCATCCATTCTTTCTCT-------------------------TTGTT-TTTTATCCCC-----------CATCAAAACATGTGGAAGGGGAG-------TGGTAGCCG
s panTro4.chr8             54956085 343 + 143986469 AATATTTAAC---------------AATGTGATTTGTAGAATATTGCATTTGTCATTGGAAATATGTA---AATAGATGCTGAGGGGACATTTTGTTTTGGATGCCGTAGGAGGTT---TTGCCAGGTGGCTTCTACATTCTCTTCTGGTGGTCATTCCTAACAAGCCACAGGGGGAGTTGCT--G-AGCCGCCG-ATGTCATCTGTT-------------CAAGAGTGC--C---------TT--------TCCCTTAAATCCATAAAGAA--------------------------AATTGAAAAGTTCGATCATTTCAATATTGGTTTTTTCC------------CTTTTCTCTGCC---TTTTATGCCT----TAGTTCATCCATTCTTTCTCT-------------------------TTGTT-TTTTATCCCC-----------CATCAAAACATGTGGAAGGGGAG-------TGGTAGCCG
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58993613 351 + 153482349 AATATTTAAC---------------AATGTGATTTGTGGAATATTGCATTTGTCATTGGAAATATGTA---AATAGATGCTGAGGGGACATTTTGTTTTGGATGCCGTAGGAGATT---TTGCCAGGTGGCTTCTACATTCTCTTCTGGTGGTCATTCCTGACAAGCCACAGGGGGAGTTGCT--G-AGCCGCCG-ATGTCATCTGTT-------------CAAGAGTGC--C---------TT--------TCCCTTAACTCCATAAAGAA-----------------CTA-AAGAAAATTGAAAAGGTCTATCATTTCAATATTGGTTTTTTCC------------CTTTTCTCTGCC---TTTTATGCCT----TAGTTCATCCATTCTTTCTCT-------------------------TTGTT-TTTTATCCCC-----------CATCAAAACATGTGGAAGGGGAG-------AGGTAGCTG
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48086027 351 + 100215132 AATATTTAAC---------------AATGTGATTTGTGGAATATTGCATTTGTCATTGGAAATATGTA---AATAGATGCTGAGGGGACATTTTGTTTTGGATGCCATAGGAGATT---TTGCCAGGTGGCTTCTACACTCTGTTCTGGTGGTCATTCCTGACAAGCCACAGGGGGAGTTGCT--G-AGCCGCCG-ATGTCATCTGTT-------------CAAGAGTGC--C---------TT--------TCCCTTAAATCCATAAAGAA-----------------CTA-AAGAAAATTGAAAAGTTCTATCATTTCAATATTGGTTTTTTCC------------CTTTTCTCTGCC---TTTTATGCCT----TAGTTCATCCATTCTTTCTCT-------------------------TTGTT-TTTTATTCTC-----------CATCAAAACATGTGGAAGGGGAG-------AGGTAGGTG
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61636844 350 + 150158102 AATATTTAAC---------------AATGTGATTTGTAGAATGTTGTGTTTGTCATTGGAAATATGTA---AATAGATGCTGAGGGGACATTTTGTTTTGGATGCTGTAGGAGATT---TTCCCAGGCGGTTTCTACATTCTCTTCTGGTGGTCATTCCTGACAAGCCATAGTGGGAGCTGCT--G-AGCCGCCG-ATGTGATCTGTT-------------CACGAGTGC--C---------TT--------TCCCTTAAATCCATAAAGAA-----------------CTA-AAGAAAATTGAAAAGTTCTATCATTTCAATATC-ATTTTTTCC------------CTTTTCTCTGCC---TTCTATGCCT----TAGTTCATCCATTCTTTCTCT-------------------------TTGTT-TTTCACCCCG-----------CATCAAAATATATGGAAGGGGAG-------AGGTAGCTG
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58309743 350 + 146850525 AATATTTAAC---------------AATGTGATTTGTAGAATGTTGTGTTTGTCATTGGAAATATGTA---AATAGATGCTGAGGGGACATTTTGTTTTGGATGCTGTAGGAGATT---TTCCCAGGCGGTTTCTACATTCTCTTCTGGTGGTCATTCCTGACAAGCCATAGTGGGAGCTGCT--G-AGCCGCCG-ATGTGATCTGTT-------------CACGAGTGC--C---------TT--------TCCCTTAAATCCATAAAGAA-----------------CTA-AAGAAAATTGAAAAGTTCTATCATTTCAATATC-ATTTTTTCC------------CTTTTCTCTGCC---TTCTATGCCT----TAGTTCATCCATTCTTTCTCT-------------------------TTGTT-TTTCACCCCG-----------CATCAAAATATATGGAAGGGGAG-------AGGTAGCTG
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53235655 350 + 139301422 AATATTTAAC---------------AATGTGATTTGTAGAATATTGTGTTTGTCTTTGGAAATATGTA---AATAGATACTGAGGGGACATTTTGTTTTGGATGCTCTAGGAGATT---TTCCCAGGTGGTTTCTACATTCTCTTCTGATGGTCATTCCTGACAAGCCATAGTGGGAGCTGCT--G-AGCCGCCG-ATGTGATCTGTT-------------CACGAGTGC--C---------TT--------TCCCTTAAATCCATAAAGAA-----------------CTA-AAGAAAATTGAAAAGTTCTATCATTTCAATATC-ATTTTTTAC------------CTTTTCTCTGCC---TTCTGTGCCT----TAGTTCATCCATTCTTTCTCT-------------------------TTGTT-TTTCACCCCG-----------CATCAAAACATGTGGAAGGGGAG-------AGGTAGCTG
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       8529 366 +    110629 ACTATTTAGC---------------AATATGATTTGTGGAATATTCCTTTTGTCATTGGATATATGTA---AATAGATGCCGAGGGGACATTTTGTTTTGGATGCTGTAGGAGATT---TTGCTTGGTAGCTTCTACATTCCCTTCTGGTGGTCACTCCTGACAAGCCACAGAGGGAGCAGCT--G-AGCTGCCA-ATTTGATCTATT-------------C-CGACTAC--C---------TT--------TAGTTTAGATCCATAAAGAG-----------------CTA-AGGAAAATGGAAAAGTTCTATCATTTCGGTATTGACTTTTTCC------------CTTTTCTCTGGA---TTTTATGCCT----TAGTTCATCCATTCTTTCTCTTTAGATACCCAATGC---------CTTGTT-TTTTATCCCC-----------CATCAAAACATGTGGAAGGGGAG-------AGGGAGCTG
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2747168 365 +  10880647 ACTGTTTAAC---------------AATATGATTTGTGGACTATTCCTTTAGTCATTAGAGATATGTC---AGTAGATGCCGAGGGGACATTCTGTTTCGGATGCTGTAGGAGATT---TTGCTAGGTAGCTTCTACATTCCCTTCTGGTGGTCATTCCTGACAAGCCACAGAGGGAGCAGCT--G-AGCCACCA-ATTTGATCTGTT-------------CATGACCGC--C---------TT--------TCCTTTGAATCCATAAAGAA-----------------CTA-AAGAAAATGGAGAAGTTCTATCATTTCGGTATTGACTTTTCCC------------CTTTTCTCTGTA---TTTTATGCTT----TAGTTCATCCATTCTTTCTCTTTAGATACTCAATGC---------CTTGTT-TTGTATCCCC-----------CATCAAAAC--GTGGAAGGGGAG-------AAGGAGCTG
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21549893 366 -  23169006 --TATTTGTC---------------AGTGTGATTTATGGAATATTGCATTTGTCATTGGAGATACTGA---AATAGATGCTGA-GGGACACTGTGGTTTGAATGCTGTAGGAGACA---GTGCCATATGCCTTCTAAGTTTCCTTCTGATGGTAATTCCTGACAAGCACCAG-GGGAGCTGCT--GAAGTCACAGAACGTGAGCTATT-------------TATAAATACTTT---------TT--------TCCCTCTTAATCATAAAGTG-----------------CTCTAAATAAATCGAGAACCTCCATAATTTTAATATTGACTTT----------------CTTTTCTTTGTC---TTTTATGCCT----TCATTCATTCATTCTTTCTTT-TGGATAGCCAGTACCTT------CCTGCT-TTTTATCTCC-----------CATCAAAACATGTGGAGGAGGAG-------AGTGAGCTG
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4221535 364 -   9676502 ----------------------------GTGATTTGTGGAATATTGC-TTTGTCCTT-GAGACATTTA---AATAGATGCTTTGGGGACAGCTTGGTTTGAGTACTGTAGGGGACA---GTGCCAGCTGCCCTCCAGATTCTCTTCTGAAAGTCATTCCAGATAAGCTGCAGTTGGAGCTTTCTGG-AACCCCAGAATGTGAGATGTT-------------TATGAGTGC--CAGTACCTTTTC--------CCCCTCATACCTATAAAAAGCC---------------CTA-AATAAAGTTGAGAGTTCCCATAATTTCAATTTTGACTTTCTCC------------CTTTTCTCTGCC---T--TATGCCT----CAGTTCATGCACTGCTGCTTT--TGGATAGCAGTACCTC------ATTGTT-TCCTGATGC------------CACCAGAACACATGGAAGGGGAG-------CTGCCGCCG
i speTri2.JH393342         C 0 I 34
s equCab2.chr15            84379285 381 +  91571448 actgttcagt---------------ggtgtgatttgtgagctactgcatttgtgattggaggtatttaaatagtaggtgattaggggacactttggtttggatgctgtaggagAC----GCACCAGAAGCCATCTACA-----TTCTGATGGGAACTCCTGACAAGCCGCTGTTGGACCTGCT--GGAGCCACAGAATGTGAGGTAGT-------------TATGAGGAC--C---------TG----TTTTTTCCTTAAATCCATACAGGGCC---------------CTA-AGTGAAATGGAGAAGTTTTACAATTTCAGTATCGATTGTCTCC------------ATTTTCTCCCTC---TCTCATGCCT----TAGTTCACCCATTCTTTCTGTTTGGATACCCAAGACCTTATTTATTTATTT-TTTTGACCCC-----------CACCAAAACAAGTGGAAGGGGAG-------AGGGTGCTG
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7117967 380 -  14545593 aatattcaac---------------agtgtgatttgtgagctactgcatttgtgattggagatatttaaatagtagatgcttaggagacactttggtttggatgctgtaggagATA---GCACCAGATGCCGTCTAAATTCTCTTCTGATCGTAGCTCCTTACAAGCCACTGTTGGAGGTGCT--GGAGCCACAGAATGTGAGATATT-------------TATGAGTAG--T---------TA----TTTTTTTCTTAAATCCATACAGGACC---------------CTA-AGTAAAATTGAGAAGTTTTATAATTTCCGTATTGACTGTCTCC------------ATTTTCTCTCTC---TTTTATGCCT----TAGTTCATTCATTCTTTCTCTTTCGATGCCCAATACCTTAT-------TTT-TTTTGTCCCC-----------CACCAAAACAGGTGGAAGGGAAG-------AGGGCGCTG
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19643946 392 -  23789964 AGTGTTTAAC---------------AGTGAGATTTGTGGGGCACTGCGTTTGTCACTGGCGATGCGTA---AGTAGATGCTTGGGGGACGC--TGGTTTGGCTGCTATAGGATGTGGTCGTGCCAGATGCCATCCAGATGCTTTTCTTATGGGAGCGCCTGACAAGCCACTGTCGGAGCTGCT--GGAACCACAGAATGTGAGCTGTT-------------CGCGAGCCC--C---------TTCACCCCCACCCCTCAAGCCCATAAAAGGCC---------------CTA-AGTGAAACTTAGAAGCTCTGCGGTTT-GGTGTGCAT----TCC------------CTGTCCTCTCTC---TTTTATGCCT----TAGTTCATTTCTTTTTTCCCTTTGTGTACCCCGGACCTTATTTATTTATTTACTTTGTCTTC-----------CACCAAAACCTGGGGAAGGGGAGAGCAGAAAGGGGgctg
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20      28047211 403 -  46401353 aatatttagc---------------tgagtgatttgtgaagtattgagtttgcgattgatggtgtgta---aagagatgcttaggggacattttgatttgagtgctgcagtggata---gcattagataccttctaaattctcttctaaTGGTAATTCCTCACAAGCCAAGGTTAAAGCTGCG--GCAGCTCCAGAATGTGAGATATCGATCAGGTATATATGTGAGTTC--TGGATT----TT--TTTTTAATCTCCAAATCTATAAAGGACCC--------------TAA-AGTAAAATTGAGAAGTTCTATGATTTCAGTATTGGCCTTCCTCA-----------TTTTATTCTCCT---TTTTATGCCTCCTGTCACTCATCCATTCTTTCTCTTTGGATACCCAATACCTTA------TTGTT-TTTTATCCCT-----------CGCCAAAACACATGGGATGGG-G-------AAGGAGCTG
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10396162 423 +  24341844 aatatttagc---------------agtgtgatttgtgaaatattgaatttgtaattgaaggtattta---aatagatgcttaggggacattttgatttggatgctgtagtagata---gcatcagatgCCTTCTAAATTCTCTTCTAATGGTAATTCCTCACAAGCCACTGTTGTAGCTGCT--GTAGCTACAGAATGTGAGGTATCTATCTGGTATATGTATGAGTAC--TG--------TC--GTTCCCCGCCCCCCATCCATAAAAGATCCTAAAGTAAAATCTATAA-AGTAAAATTGAGAAATTCTGTGATTTCCGTATTGGCTTTCTCCAATTTTTTTTTTTTTTTTTCTCCTGCCTTTTATGCCT----TCACTCATCCATTCTTTCTTTCTGGATACCTAATACCTTA------TTGTT-TTTTATCCCT-----------CACCAAACAACATGGAATGGG-G-------AAGGAGCTG
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436          1562884 349 -   2788317 aatacttaataacgtgtgtgatacatgagtgatatatgatgtagtaaaccc-caatc-----tattta---aatagatgcttagggaacattttgatttggatgttgtaggagATA---G---------CCTTTTAAGTTCTCTTCTGAAGTTAATTCCTGTCAGGAGACAGTTGGAGCTGCT--GTAGTCACAGAATGTGAGAAAT--------------TTTAATTTC--T---------TT--TTTTTCTTTATTAAATTCAT-------------------------------AAATTGAGCATTTC-------------------------------------TCTTTTTCTGCC---TTTCATTTCT----TATTCCATCCATTCTTTCTTTTTGGATAATCAGTATCTTA------CTGTT-TTTGTTTTTTTTTGTGTGTGCCACTAAAACACATTGAAGGGG-A-------TGGGGGCTG
i dasNov3.JH567436         C 0 C 0
e orcOrc1.KB316907         11148669   0 +  17242564 C

a score=509086.000000
s hg38.chr8_KI270814v1_alt    15421 100 +    141812 ATTGTGTGTCCTGCTGACGGCT------TTAC---------------TCCTGGAG--AGGTGGTGGCA-CCTCA-TTGTATAAA-TAAACAAATGGAGA--CT--GAGTTATTATGTAT---TTTGAGGCCAT
s panTro4.chr8             54956428 100 + 143986469 ATTGTGTGTCCTGCTGACGGCT------TTAC---------------TCCTGGAG--AGGTGGTGGCA-CCTCA-TTGTATAAA-TAAACAAATGGAGA--CT--GAGTTATTATGTAT---TTTGAGGCCAT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58993964  99 + 153482349 ATTGTGTGTCCTGCTGACAGCT------TTAC---------------TCCTGGAG--AGGTGGTGGCA-CCTCA-TTGTATAAA-TAAACAAGTGGAGA---T--GAGTTATTATGTAT---TTTGAGGCCAT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48086378 100 + 100215132 ATTGTGTGTCCTGCTGACGGCA------TTAC---------------TCCTGGAG--AGGTGGTGGCA-CCTCA-TTGTATAAA-TAAACAAGTGGAGA--CT--GAGTTATTATGTAT---TTTGAGGCCAT
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61637194 100 + 150158102 ATTGTGTGTCCTGCTGACGGCT------TTAC---------------TCCTGGAG--AGGTGGTGGCA-CCTCA-TTGTATAAA-TAAACAAGTGGAGA--CT--GAGTTATTATGTAT---TTTGAGGCCAT
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58310093 100 + 146850525 ATTGTGTGTCCTGCTGACGGCT------TTAC---------------TCCTGGAG--AGGTGGTGGCA-CCTCA-TTGTATAAA-TAAACAAGTGGAGA--CT--GAGTTATTATGTAT---TTTGAGGCCAT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53236005 100 + 139301422 ATTGTGTGTCCTGCTGACGGCT------TTAC---------------TTCTGGAG--AGGTGGTGGCA-CCTCA-TTGTATAAA-TAAACAAGTGGAGA--CT--GAGTTATTATGTAT---TTTGAGGCCAT
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       8895 100 +    110629 ATTGTGTGTCCTGCTGATGACT------TTTT---------------TGCTGGAG--AGCTGGTGGCA-CCTCA-TTGTATAAG-TAAACAAGTAGAGA--CT--CAGTTATTATGCAT---TTTGAGGCCAT
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2747533 100 +  10880647 ATTGTGTGTCCTGCTGATGACT------TTTT---------------TGCTGGAG--AGGTAGTGGCA-CCTCA-TTGTATAAG-TAAACAAGTGGAGA--CT--GAGTTATTATGCAT---TTTGAGGCCAT
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21550259  95 -  23169006 ATTATA-GGCCCACTGCGTGCT------TTGC---------------TGTGGGAG--AGGTGATGGTG-CCTCA-TTTCATAAG-TGAACAAGTAGAGG--CT--CAGTTACTACATTA---TT----ACCAT
i otoGar3.GL873541         C 0 C 0
s equCab2.chr15            84379666 111 +  91571448 AC--TGTGCCAGGCTGAGTGTTGAGAGCTTTC---------------TGCTTGAGCTGGGCGTC-GCaccctca-ttttatagg-caaacaaatggggatgct--gagttattctgtaactgtttgaggtcac
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7118347 110 -  14545593 TC----TGCTAAGCTGGGTGTTGAGAGCTTGC---------------CACTTGAGCCTGGTGACAGCaccctca-ttttatagg-taaacaaatagggatgct--gagttattacataattgtttgaggtcat
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19644338 114 -  23789964 actgtgtgccaggctgagtgccgagagctttc---------------caCTGGAGTGGGGTGGCGGCaccctca-ttttacagg-ccagcgaatggggactct--gagttgctaggtaaccgtttgagctcag
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20      28047614 124 -  46401353 ACTATGTGCCGCGTTGAGTGTT------GAGTTCTGAGTGATTTaccactctgagctaggtggtggcaccctca-ttttatgggttaaacagatggagc--ctcccagtttttgtgtaactgtttaaggtcgc
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10396585 107 +  24341844 ACTGTGTGCCATGTTGAGTGTT------AAGT-----------------TCTgagctaggtggtggcaccctca-ttttatgggttaaacagatggaga--ctctgagttattatgtcactgtttaaggtcac
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436          1563233 107 -   2788317 ACTGTGTGCCATGCTGAGTGTC------CAGG---------------Gctttgagctaagtggaagcaccttcagttttatagg-taaacaggtggaga--ct--gagttactatgtaactgttcgaagtcca
i dasNov3.JH567436         C 0 I 572
e speTri2.JH393342          4221899  34 -   9676502 I
e orcOrc1.KB316907         11148669   0 +  17242564 C

a score=7085.000000
s hg38.chr8_KI270814v1_alt    15521 1 +    141812 G
s panTro4.chr8             54956528 1 + 143986469 G
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58994063 1 + 153482349 G
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48086478 1 + 100215132 G
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61637294 1 + 150158102 G
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58310193 1 + 146850525 G
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53236105 1 + 139301422 G
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       8995 1 +    110629 G
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2747633 1 +  10880647 G
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21550354 1 -  23169006 G
i otoGar3.GL873541         C 0 C 0
s equCab2.chr15            84379777 1 +  91571448 a
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7118457 1 -  14545593 g
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19644452 1 -  23789964 g
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20      28047738 1 -  46401353 a
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10396692 1 +  24341844 g
i triMan1.JH594629         C 0 C 0
e dasNov3.JH567436          1563340 572 -   2788317 I
e speTri2.JH393342          4221899 34 -   9676502 I
e orcOrc1.KB316907         11148669 0 +  17242564 C

a score=26095.000000
s hg38.chr8_KI270814v1_alt    15522 5 +    141812 TAGCT
s panTro4.chr8             54956529 5 + 143986469 TAGCT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58994064 5 + 153482349 TAGCT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48086479 5 + 100215132 TAGCT
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61637295 5 + 150158102 TAGCC
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58310194 5 + 146850525 TAGCC
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53236106 5 + 139301422 TAACC
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       8996 5 +    110629 TAGCT
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2747634 5 +  10880647 TAGCT
i saiBol1.JH378179         C 0 C 0
s equCab2.chr15            84379778 5 +  91571448 tggtt
i equCab2.chr15            C 0 I 9
s pteAle1.KB030580         19644453 5 -  23789964 taggt
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20      28047739 5 -  46401353 tagct
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10396693 5 +  24341844 tagct
i triMan1.JH594629         C 0 C 0
e dasNov3.JH567436          1563340 572 -   2788317 I
e speTri2.JH393342          4221899 34 -   9676502 I
e cerSim1.JH767782          7118458 0 -  14545593 C
e orcOrc1.KB316907         11148669 0 +  17242564 C
e otoGar3.GL873541         21550355 0 -  23169006 C

a score=14254.000000
s hg38.chr8_KI270814v1_alt    15527 7 +    141812 TAGGggt
s panTro4.chr8             54956534 7 + 143986469 TAGGggt
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58994069 1 + 153482349 T------
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48086484 7 + 100215132 TAGGggt
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61637300 7 + 150158102 TAGGggt
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58310199 7 + 146850525 TAGGggt
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53236111 7 + 139301422 TAGcggt
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       9001 7 +    110629 TAGGGAT
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2747639 7 +  10880647 TAGGGAT
i saiBol1.JH378179         C 0 C 0
s pteAle1.KB030580         19644458 7 -  23789964 tggaagt
i pteAle1.KB030580         C 0 I 4
s loxAfr3.scaffold_20      28047744 7 -  46401353 tgagagt
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10396698 7 +  24341844 agagaat
i triMan1.JH594629         C 0 C 0
e dasNov3.JH567436          1563340 572 -   2788317 I
e equCab2.chr15            84379783 9 +  91571448 I
e speTri2.JH393342          4221899 34 -   9676502 I
e cerSim1.JH767782          7118458 0 -  14545593 C
e orcOrc1.KB316907         11148669 0 +  17242564 C
e otoGar3.GL873541         21550355 0 -  23169006 C

a score=-4460.000000
s hg38.chr8_KI270814v1_alt    15534 1 +    141812 -c
s panTro4.chr8             54956541 1 + 143986469 -c
i panTro4.chr8             C 0 C 0
s nomLeu3.chr16            48086491 1 + 100215132 -c
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61637307 1 + 150158102 -c
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58310206 1 + 146850525 -c
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53236118 1 + 139301422 -c
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       9008 1 +    110629 -C
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2747646 1 +  10880647 -C
i saiBol1.JH378179         C 0 C 0
s loxAfr3.scaffold_20      28047751 1 -  46401353 g-
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10396705 1 +  24341844 g-
i triMan1.JH594629         C 0 C 0
e dasNov3.JH567436          1563340 572 -   2788317 I
e equCab2.chr15            84379783 9 +  91571448 I
e speTri2.JH393342          4221899 34 -   9676502 I
e pteAle1.KB030580         19644465 4 -  23789964 I
e cerSim1.JH767782          7118458 0 -  14545593 C
e orcOrc1.KB316907         11148669 0 +  17242564 C
e otoGar3.GL873541         21550355 0 -  23169006 C
e ponAbe2.chr8             58994070 0 + 153482349 C

a score=1339931.000000
s hg38.chr8_KI270814v1_alt    15535 490 +    141812 ctggtccctggccttttaacaacctggttgtacagcaggaggtggtgagtgggc--------attagagcagattcatgtgtgtttacagctgttccccgtcattc----gcattacggcctgagctctgcctactgtcagatcagcagtggcattagattctcacaggagcgtgaaccctgttgtgaacatgcttgtggtgcatgcaggggatctaggttgtgtgcttcttatgagaatctaatgactgatgatctgtcactatctcccatcacccccagatgggacagtctagttgcagggaaagaagctgatgcctctcactgattctacattatggtgagttgtataatttcattatatattacaatgtaataataa-----caaagtgcacagtaaatgtaatgtgcttgaatcatcccaaaaccatc-------ccctccaacaatgaagaaaaa-ttatcttccacgaaactggtccctggtgccaaaaaggccggggtctggtgGTA
s panTro4.chr8             54956542 490 + 143986469 ctggtccctggccttttaacaacctggttgtacagcaggaggtggtgagtgggc--------attagagcagattcatgtgtgtttacagctgttccccgtcattc----gcattacggcctgagctctgcctactgtcagatcagcagtggcattagattctcacaggagcgtgaaccctgttgtgaacatgcttgtggtgcatgcaggggatctaggttgtgtgcttcttatgagaatctaatgactgatgatctgtcactatctcccatcacccccagatgggacagtctagttgcagggaaagaagctgatgcctctcactgattctacattatggtgagttgtataatttcattatatattacaatgtaataataa-----caaagtgcacagtaaatgtaatgtgcttgaatcatcccaaaaccatc-------ccctccaacaatgaagaaaaa-ttatcttccacgaaactggtccctggtgccaaaaaggccggggtccggtgGTA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58994070 477 + 153482349 -------------TTttaacaacctggttgttcagcaggaggtggtgagtaggc--------attagagcagattcatgtgtgtttacagctgttccccgtcattc----gcattacggcctgagctctgcctactgtcagatcagcagtggcattagattctcacaggaacgtgaaccctgttgtgaacatgcttgtggtgcatgcaggggatctaggttgtgtgcttcttatgagaatctaatgactgatgatctgtcactatctcccattacccccagatgggacagtctagttgcagggaaagaagctgacgcctcccactgattctacattatggtgagttgtataatttcattatatattacaatgtaataataa-----caaagtgcacagtaaatgtaatgtgcttgaatcatcccaaaaccatc-------ccctccaacaatgaagaaaaa-ttatcttccacgaaactggtccctggtgccaaaaaggccaggatccggtgGTa
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48086492 490 + 100215132 ctggtccctggccttttaacaacctggttgtgcagcaggaggtggtgagtgggc--------attagagcagattcatgtgtgtttacagctgctccccatcattc----gcattacggcctgagctctgcctactatcagatcagcaatggcattagattctcacaggagcgtgaaccatgttgtgaacatgcttgtggtgcacgcaggggatctaggttgtgtgcttcttatgagaatctaatgactgatgatctgtcactatctcccatcacccccagatgggacagtctagttgcagggaaagaagctgatgcctcccactgattctacattatggtgagttgtataatttaattatatattacaatgtaataataa-----caaagtgcacagtaaatgtaatgtgcttgaatcatcccaaaaccatc-------ctccccaacaatgaagaaaaa-ttatcttccacgatactggtccctggtgccagaaaggcccgggtccCGTGGTA
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61637308 494 + 150158102 ctggtctctggccttttaacaacatggctgcacagcaagaggtggtgagtgggc--------gatagagcagattcatgtgtgtttacagctgcttcccatctttccccatcattatggcctgagctctgcctactgtcagatcagcaatggcattagattctcacaggagcatgaaccctgttgtgagcatgcttgtggtgcacacaagggatctaggttgtgtgcttcttatgagaatctaatgactgatgatctgtcactatctcccatcacccccagatgggacagtctagttgcagggaaagaagctgatgcctcccattgattctacattatggtgagttgtataatttacttatatattacaatgtaataataa-----caaagtgcacaataaatgtaatgtgcttgaatcatcccaaaaccatc-------ccccgcaacaatgaagaaaaattaatcttccacgaaactggt-cctggtgccaaaaaggccggggTCTAGTGGTa
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58310207 494 + 146850525 ctggtctctggccttttaacaacatggctgcacagcaagaggtggtgagtgggc--------gatagagcagattcatgtgtgtttacagctgcttcccatctttccccatcattatggcctgagctctgcctactgtcagatcagcaatggcattagattctcacaggagcatgaaccctgttgtgagcatgcttgtggtgcacacaagggatctaggttgtgtgctgcttatgagaatctaatgactgatgatctgtcactatctcccatcacccccagatgggacagtctagttgcagggaaagaagctgatgcctcccattgattctacattatggtgagttgtataatttcattatatattacaatgtaataataa-----caaagtgcacaataaatgtaatgtgcttgaatcatcccaaaaccatc-------ccccgcaacaatgaagaaaaattaatcttccacgaaactggt-cctggtgccaaaaaggccggggtccAGTGGTA
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53236119 494 + 139301422 ctggtctctggccttttaacaacatggctgcacagcaagaggtggtgagtgggc--------gatagagcagattcatgtgtgtttgcagctgctccccatctttccccatcattatggcctgagctctgcctactgtcagatcagcaatggcattagattctcacaggagcatgaaccttgttgtgagcatgcttgtggttcacacaagggatctaggttgtgtgcttcttatgagactctaatgactgatgatctgtcactatctcccatcacccccagatgggactgtctagttgcagggaaagaagctgatgcctcccattgattctacattatggtgagttgtataatttcattacatattacaatgtaataataa-----caaagtgcacaataaatgtaatgtgcttgaatcatcccaaaaccatc-------ccccgcaacagtgaagaaaaa-taatcttccacgaaactggtccctggtgccaaaaaggccggggtccAGTGATA
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       9009 480 +    110629 TTggtccctggccatttaacaacctggctgcacaacagga---ggtgagggggt--------gatagagcaga------------tggagccactccccgtcattt----gcattacagcctgagctcttcttcctgtaggatcagcaatggcatttgattctcataggagtgtgaaccctgttgtgaacacgcatgtggtgcacacggggtatcta-gctgtgtgcttctcatgagaatctaatgactgatgatctgtcactgtttctcatcatccccagatgggacagtctagttgcagggaaagaagctgatgcctcccactgattctacattatggggagtcatgtaatttcattatatgttacaatgtaataataaacaagtaaagtgcacagtaaatgtaacatgcttgaatcaccccaaaaccttac------cccactagtatgaaagaaaaa-ttgtcttccgtgaaactggtcattgacaccacaaaggctgggatctgctgATG
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2747647 493 +  10880647 TTggttcctggctgtttaacaacctggctgcacagcagga---ggtgagggggtgatagagcgatagagcaga------------tggagctgctccccatcattt----gcattacagcctgagctctgcctcctgtcggatcaacaatggcatttgattttcataggagtgtgaaccctgttgtgtacatgcatgtggtgcacacaaggtatcta-gctgtgtgcttctcatgagaatctaatgactgatgatctgtcactatttcccatcacccccagatgggacagtctagttgcagggaaacaagctgatgcctcccactgattctacattatggggagtcatgtaatttcatcatatgttacaatgtaataataaacaagtaaagtacacagtaaat-taatgtgcttgaatcacccccaaacctctccccccgccccccagtatggaagaaaca-ttgtcttccatgaaactggtcattgataccaaaagggctgggatctgctgATG
i saiBol1.JH378179         C 0 C 0
e dasNov3.JH567436          1563340 572 -   2788317 I
e equCab2.chr15            84379783   9 +  91571448 I
e speTri2.JH393342          4221899  34 -   9676502 I
e triMan1.JH594629         10396706   0 +  24341844 C
e loxAfr3.scaffold_20      28047752   0 -  46401353 C
e pteAle1.KB030580         19644465   4 -  23789964 I
e cerSim1.JH767782          7118458   0 -  14545593 C
e orcOrc1.KB316907         11148669   0 +  17242564 C
e otoGar3.GL873541         21550355   0 -  23169006 C

a score=7960.000000
s hg38.chr8_KI270814v1_alt    16025 2 +    141812 TA
s panTro4.chr8             54957032 2 + 143986469 TA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58994547 2 + 153482349 ta
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48086982 2 + 100215132 TA
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61637802 2 + 150158102 ta
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58310701 2 + 146850525 TA
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53236613 2 + 139301422 TA
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       9489 2 +    110629 TA
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2748140 2 +  10880647 TA
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21550355 2 -  23169006 TC
i otoGar3.GL873541         C 0 C 0
s cerSim1.JH767782          7118458 2 -  14545593 ta
i cerSim1.JH767782         C 0 C 0
e dasNov3.JH567436          1563340 572 -   2788317 I
e equCab2.chr15            84379783 9 +  91571448 I
e speTri2.JH393342          4221899 34 -   9676502 I
e triMan1.JH594629         10396706 0 +  24341844 C
e loxAfr3.scaffold_20      28047752 0 -  46401353 C
e pteAle1.KB030580         19644465 4 -  23789964 I
e orcOrc1.KB316907         11148669 0 +  17242564 C

a score=56845.000000
s hg38.chr8_KI270814v1_alt    16027 18 +    141812 GCTAGGAAACAGTGGAAA
s panTro4.chr8             54957034 18 + 143986469 GCTAGGAAACAGTGGAAA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58994549 18 + 153482349 gctaggaaacagtggaaa
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48086984 18 + 100215132 GCTAGGAAACAGTAGAAA
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61637804 18 + 150158102 gctaggaaacagtggaaa
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58310703 18 + 146850525 GCTAGGAAACAGTGGAAA
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53236615 18 + 139301422 GTTAGGAAACAGGGGAAA
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       9491 17 +    110629 GCTCGGAAACAGTGG-AT
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2748142 17 +  10880647 GCTAGGAAACAGTGG-AT
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21550357 15 -  23169006 GCTAGGAAATGGTGG---
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4221933 18 -   9676502 GCCTGGGGGCTGGGGATT
i speTri2.JH393342         I 34 C 0
s cerSim1.JH767782          7118460 16 -  14545593 gctagaaaagagtgga--
i cerSim1.JH767782         C 0 C 0
e dasNov3.JH567436          1563340 572 -   2788317 I
e equCab2.chr15            84379783  9 +  91571448 I
e triMan1.JH594629         10396706  0 +  24341844 C
e loxAfr3.scaffold_20      28047752  0 -  46401353 C
e pteAle1.KB030580         19644465  4 -  23789964 I
e orcOrc1.KB316907         11148669  0 +  17242564 C

a score=4125.000000
s hg38.chr8_KI270814v1_alt    16045 1 +    141812 C
s panTro4.chr8             54957052 1 + 143986469 C
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58994567 1 + 153482349 c
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48087002 1 + 100215132 C
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61637822 1 + 150158102 c
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58310721 1 + 146850525 C
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53236633 1 + 139301422 C
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       9508 1 +    110629 C
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2748159 1 +  10880647 C
i saiBol1.JH378179         C 0 C 0
s speTri2.JH393342          4221951 1 -   9676502 G
i speTri2.JH393342         C 0 C 0
s loxAfr3.scaffold_20      28047752 1 -  46401353 c
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10396706 1 +  24341844 c
i triMan1.JH594629         C 0 C 0
e dasNov3.JH567436          1563340 572 -   2788317 I
e equCab2.chr15            84379783 9 +  91571448 I
e pteAle1.KB030580         19644465 4 -  23789964 I
e cerSim1.JH767782          7118476 0 -  14545593 C
e orcOrc1.KB316907         11148669 0 +  17242564 C
e otoGar3.GL873541         21550372 0 -  23169006 C

a score=14898.000000
s hg38.chr8_KI270814v1_alt    16046 2 +    141812 TG
s panTro4.chr8             54957053 2 + 143986469 TG
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58994568 2 + 153482349 tg
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48087003 2 + 100215132 TG
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61637823 2 + 150158102 tg
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58310722 2 + 146850525 TG
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53236634 2 + 139301422 TG
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       9509 2 +    110629 TG
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2748160 2 +  10880647 TG
i saiBol1.JH378179         C 0 C 0
s speTri2.JH393342          4221952 2 -   9676502 TG
i speTri2.JH393342         C 0 C 0
s equCab2.chr15            84379792 2 +  91571448 tg
i equCab2.chr15            I 9 C 0
s loxAfr3.scaffold_20      28047753 2 -  46401353 tg
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10396707 2 +  24341844 tg
i triMan1.JH594629         C 0 C 0
e dasNov3.JH567436          1563340 572 -   2788317 I
e pteAle1.KB030580         19644465 4 -  23789964 I
e cerSim1.JH767782          7118476 0 -  14545593 C
e orcOrc1.KB316907         11148669 0 +  17242564 C
e otoGar3.GL873541         21550372 0 -  23169006 C

a score=203461.000000
s hg38.chr8_KI270814v1_alt    16048 42 +    141812 GATTTGAATCTGTATCTGTTCTACTCTG---------------------------AGCATGGTGTTTTT
s panTro4.chr8             54957055 42 + 143986469 GATTTGAATCTGTATCTGTTCTACTCTG---------------------------AGCATGGTGTTTTT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58994570 42 + 153482349 gatttgaacctatatctgttctactctg---------------------------agcatggtgttttt
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48087005 42 + 100215132 GATTTGAACCTGTATCTGTTCTACTCTG---------------------------AGCATGGTGTTTTT
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61637825 41 + 150158102 gatttgaacctgtatctgctctactctg---------------------------agcatgctg-tttT
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58310724 41 + 146850525 GATTTGAACCTGTATCTGCTCTACTCTG---------------------------AGCATGCTG-TTTT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53236636 41 + 139301422 GATTTGAACCTGTATCTGCTCTACTCTA---------------------------AGCATGTTG-TTTT
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       9511 41 +    110629 GATTTGAACCTGTATCTGTTCTACTCTG---------------------------AGCATGCTG-TTTT
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2748162 41 +  10880647 GATTTGAACCTGTATCTGTTCTACTCTG---------------------------AGCATGCTG-TTTT
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21550372 38 -  23169006 -CTTTGAAC--ACATCTGTGCCGTGCTG---------------------------AACATGCTA-TTTT
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4221954 39 -   9676502 GACTTGTACCCCTGTCCAT--TACTCCA---------------------------GGTGTGCTC-TTTT
i speTri2.JH393342         C 0 C 0
s equCab2.chr15            84379794 68 +  91571448 gatttgaagccacgtcagttccactctgaggcctatTGTTTATTCTTCCGTGAGAAGCATGTTG-TTGT
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7118476 63 -  14545593 --tttgaatccacatcagttctactctgaggcctatTATTTATTCTTCCACGAGAAGCA---TG-TTTT
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19644469 64 -  23789964 gatttgaacccacgtctgctctgtcccaaggcctgttgtttattcttccataacaagc----tg-tttc
i pteAle1.KB030580         I 4 C 0
s loxAfr3.scaffold_20      28047755 68 -  46401353 gatttgaacccacatctattctgcttcaacacctattgttcattcGCCCATGACAATCATGCTA-TTTT
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10396709 68 +  24341844 gatattaacccacatctgttctgctccagcacctattattcattggcccatgacaatcatgctg-TTTT
i triMan1.JH594629         C 0 C 0
e dasNov3.JH567436          1563340 572 -   2788317 I
e orcOrc1.KB316907         11148669  0 +  17242564 C

a score=2173865.000000
s hg38.chr8_KI270814v1_alt    16090 328 +    141812 AAGTAATCTAATTTCATTTGGCTGAAATTTATTCAAACTGTGTGTCACAGGCAG----TTTGCCCTTTATTTCTCTTTATGAAATGAAAAACTATTGCTGTTAAAGGAATTAAAGGT-ATCAGCAGAC-----AGAATCTTTCTTGAGA---GGTAGGAT---GAGGAAGTACAAGTCAGTTTCTTTTTCTTGA-TTTTGAGAACATGCTGTGT----------------AAAGTTTAT----------TGTG-TGTTTGTATGTGTTTTAAGATTA-CTCAGGGG-AAATGATTAGCCAGGCGTCTTTTC----------TGGCCTCA----GAATTCCCCAGGGGATTGTGTC--------------------------------------------------------------------------------------------CTCTGAAAAGCATC-CACC------A-G-AGCCTTTTTCCTA
s panTro4.chr8             54957097 328 + 143986469 AAGTAATCTAATTTCATTTGGCTGAAATTTATTCAAACTGTGTGTCACAGGCAG----TTTGCCCTGTATTTCTTTTTATGAAATGAAAAACTATTGCTGTTAAAGGAATTAAAGGT-ATCAGCAGAC-----AGAATCTTTCTTGAGA---GGTAGGAT---GAGGAAGTACAAGTCAGTTTCTTTTTCTTGA-TTTTGAGAACATGCTGTGT----------------AAAGTTTAT----------GGTG-TGTTTGTATGTGTTTTAAGATTA-CTCAGGGG-AAATGATTAGCCATGTGTCTTTTC----------TGGCCTCA----GAATTCCCCAGGGGATTGTGTC--------------------------------------------------------------------------------------------CTCTGAAAAGCATC-CACC------A-G-AGCCTTTTTCCTA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58994612 343 + 153482349 AAGTAATCTAATTTCATTTGGCTGAAATTTATTCGCACTATGTGTCACAGGCAG----TTTGCCCTTTATTTCTTTTTATGAAATGAAAAACTATTGCTGTTAAAGGAATTAAAGGT-ATCAGCAGAC-----AGAATCTTTCTTGAGA---GATAGGAT---GAGGAAGTACAAGTCAGTTTCCTTTTCTTGA-TTTTGAGGACATGCTGTGTTT-TAGAACTGTTTCCAAAGTTTAT----------TGTG-TGTATGTATGTGTTTTAAGATTA-CTCAGGGA-AAATGATTAGGCATGTGTCTTTTC----------TGGCCTCA----GAATTCCCCAGGGGATTGTGTC--------------------------------------------------------------------------------------------CTCTGAAAAGCAGC-CACC------A-G-AGCCTTTTTCCTA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48087047 344 + 100215132 AAGTAATCTAATTTCATTTGGCTGAAATTTATTCGCACTATGTGTCACAGGCAC----TTTGCCTTTTATTTCTTTTTATGAAATGAAAAACTATTGCTGTTAAAGGAATTAAAGATAATCAGCAGAC-----AGAATCTTTCTTGAGA---GGTAGGAT---GAGGAAGTGCAAGTCAGTTTCTTTTTCTTGA-TTTTGAGAACATGCTGTGTTT-TAGAACTGTTTCCAAAGTTTAT----------TGTG-TGTATGTATGTGTTTTAAGATTA-CTCAGGGG-AAATGATTAGCCATGTGTCTTTTC----------TGGCCTCA----GAATTCCCCAGGGGATTGTGTC--------------------------------------------------------------------------------------------CTCTGAAAAGCAGC-CACC------A-G-AGCCTTTTTCCTA
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61637866 347 + 150158102 AAGTAATCTAATTTAATTTGGCTGAAATTTATTCACACTATGTGTCACAGGTGG----TTTGCCCTTTATTTCTTTTTATGAAATGAAAAACTATTGCTATTAAAGGAATTAAAGAT-ATCAGCAGACAC-AGAGAATCTTTCTTGAGA---GGTAGGAT---GAGAAAGTACAAGTGAGTTTCTTTCTCTTGA-TTTTGAGAACATGCTGTGTTT-TAGAACTGTTTCCAAAGTTTAT----------TGTG-TGTATGTATGTGTTTTAAGATTA-CTCAGGGG-AAATGATTAGCCATGTGTCTTTTC----------TGGCCTCA----GGATTCCCCAGAGGATTGTGTC--------------------------------------------------------------------------------------------CTCTGAAAAGCAGC-CACC------A-G-AGCCTTTTTCCTA
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58310765 347 + 146850525 AAGTAATCTAATTTAATTTGGCTGAAATTTATTCACACTATGTGTCACAGGTGG----TTTGCCCTTTATTTCTTTTTATGAAATGAAAAACTATTGCTATTAAAGGAATTAAAGAT-ATCAGCAGACAC-AGAGAATCTTTCTTGAGA---GGTAGGAT---GAGAAAGTACAAGTGAGTTTCTTTCTCTTGA-TTTTGAGAACATGCTGTGTTT-TAGAACTGTTTCCAAAGTTTAT----------TGTG-TGTATGTATGTGTTTTAAGATTA-CTCAGGGG-AAATGATTAGCCATGTGTCTTTTC----------TGGCCTCA----GGATTCCCCAGAGGATTGTGTC--------------------------------------------------------------------------------------------CTCTGAAAAGCAGC-CACC------A-G-AGCCTTTTTCCTA
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53236677 346 + 139301422 AAGTAATCTAATTTAATTTGGCTGAAATTTATTCACACTATGTGTCACAGGCGG----TTTGCCCTTTATTTCTTTTTATGAAATGAAAAACTATTGCTGTTAAAGGAATTAAAGAT-ATCAGCAGACAC-AGAGAATCTTTCTTGAGA---GGTAGGAT---GAGGAAGTACAAGTGAGTTTCTTTCTCTTGA-TTTTGAGAACATGCTGTGTTT-TAGAACTGTTTCCAAAGTTTAT----------TGTG-TGTATGTATGTGTTTTAAGATTA-CTC-GGGG-AAATGATTAGCCATGTTTCTTTTC----------TGGCCTCA----GGATTCCCCAGAGGATAGTGGC--------------------------------------------------------------------------------------------CTCTGAAAAGCAGC-CACC------A-G-AGCCTTTTTCCTA
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       9552 344 +    110629 AAGTAATCGGATTTCATTTGGCTGAAATTTATTTGCACTATCTGTCACAAGTGG----TTTGTCCTTTATATCTTTTTATAAAATGAAAAACTATTGCTGTTAAAGGAATTAAAGAT-ATCAGTAGGCACAAGAGAATCTTTCTTGAGA---GGTATCAC---GAGGAAGTACAAGTGAGTTTCTT----TTGATTTTTGACATCGTGCTATGTTT-AAGAACTGTTACCAAAGTTTAG----------TGTG-TGTATGTATGTGTTTTAAGATTA-CTCA-GGG-AAATGATTAGCCATGGGTCTTTTC----------TGGCCTCA----GAATTCCCCAGGGGGTTGTGTC--------------------------------------------------------------------------------------------CTCTAAAAAGCAGC-CACT------A-G-ACCCTTTTTCCTA
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2748203 342 +  10880647 AAGTAATCTAATTTCATTTGGCTGAAATTTATTTGCACTATCCGTCACAGGTGG----TTTGTCCTTTATATCTTTTTACAAAATGAAAAACTATTGCTGTTAAAGGAATTAAAGAT-ATCAGTAGACAC--GAGAAACTTTCTTGAGA---GGTGTGAG---GAGGAAGTACAAGTGAGTTTCTT----TTGA-TTTTGACATCATGCTATCTTT-AAGAACTGTTACCAAAGTTTAT----------TGTG-TGTATGTATGTGTTTTAAGATTA-CTCAGGGG-AAATAATTAGCCATGTGTCTTTTC----------TGGCCTCG----GAATTCCCCAGGGGATTGTGTC--------------------------------------------------------------------------------------------CTCTGAAAAGCAGC-CACC------A-G-AGCCTATTTCCTA
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21550410 341 -  23169006 AAGTAATGTAATTTCATGTGATCGAAATTTATTCACACTATCAGTCACAAGCAA----TTTACTCTTTATCTGTTTTTGTGAAATGAAAAACATGTGATGTTAAAGGAATTACTGAT-ACCACTAGACAG--GAGA-----CCTTGAGA---GGTAGTAT---GAGAAAGTGTCCATGAACCTCTTTCTCTTGG-TTTTCAAATCATGCTGTATTT-TGAAACTGTCTGTAAAGTTTAT----------TCTT-TGTTTG-GTGTGTTTTAAGATGT-CTTGGGGA-AAACAATTGGCCATGTATCTTTTCCAAACTCTGATGACCTCC----CTGTTCCCCAGGGGGCTGGAAG--------------------------------------------------------------------------------------------CTCAAGAAAGCAGC-TGCT------G-A-AG---------TA
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4221993 423 -   9676502 AAGTGATTTCATCC--TGTGATTAACACTCATTC---CTGGCTGTCACAGCCAG----TGTGCCCTTTAC-CCTTTTTATGAAATGAAAAGCTGTTGCTATTAAAGGAATCACACAT-AGCAGCTAAC----TGGAGTCTTTCTAGATAATCAGCAGGAC---TAGGAAGTACAGGTCGG-CTCTTCCTGTTGG-TCTGGACATCCTGTTGTGCTT-TAGAGCTATCTCCAAAGT--------------------------GTGTGCTCTCAGTTTG-CCT-GAGG-AGAGGATTTGCCGC---TCTTTCC----------TGACCTCA-CCTCTGCTCTTTCAGGGACCGTGCCTtgccgaattctggctgggcacaaatcatgagccactgaagcaaaacaaacttttatttccaaactcctgctaacgccacgcacgtggccttctctgggacacaccacaccaactgga-a-atccctcctcctg
i speTri2.JH393342         C 0 I 182
s equCab2.chr15            84379862 355 +  91571448 AATTAA-TTAATTTCA-TTGACTGAAATTC-TTCACACTGTGTGTCACAGGCAA----TTTGCCCTTTATCTCTATTTGTGAAATGG-AAACTCTTCCTGTTAAAGAAATTACAGCT-ATCAGCAGACGGGGGAGAATCTTTTCTGAGA---GGTAGGAT---GAGAAAGTATAAGTGAGCTGCTTTCTCTTGG-TTTTGATGTCATGGTATGTTT-TAGAGCTGTCTCCAGAGTTTAT----------TCTC-TGTGTGTGTGTTTTCTAAGATTA-CTTGGGGG-AAATGGTTGACAATTTGTCTTTTCCTACCTTGGATGACGTCC----CTGTTTCCCCAGGGATCATGAG--------------------------------------------------------------------------------------------CTCTGGAAAGCAGC-TGCC------G-GCAGCCTATTTCCTG
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7118539 368 -  14545593 AAGTAATTTAATTTCA-TTGACTGAAATTC-TTCACACTATCTGTCATAGGCAA----TTTGCCCTTTATCTCTGTTTTTGAACTGGAAAACTATTCCTGTTAAAGGAATTACAGCT-ATCTGCAGACAGGGGAGAATCTGTTCTCAGT---GGTAGGAT---GAGAAAGTATAAGTGAGTTTCTTTCTCTTGG-TTTTGACGTCATGCTATGTTT-TAGAGCTGTCTCCAGAGTTTATCgtgtgtgtgtgtt-tgtgtgtgtgtgtTCTAAGATTA-CTTGGGGGAAAATGGTTGGCAAGTTATCTTTTCCTACCTTAGATGACCTCC----CTGTTTCCCCAGGGATCATGAG--------------------------------------------------------------------------------------------CTCTGGAAAGCAGC-TGCC------G-GAAGCCTGTTTCCTG
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19644533 351 -  23789964 AGGCAAATTAATTTCATTTGACTGAAATTC-TTCCCACTGTCTGTCACAGGCAGTATTTTTGGTCTTTATCTCTGCTTGTGAAATGGGAAGGTGTCCCTGTCAAAGGAATGACAGCC-GTCAGCTCACGGAGCGGAGTCTGTCCTGAGA---GGCGGGCT---GAGGGAGTGTGGCTGAGCTTCCTTCTCTTGG-TTTTGGCATCTTGCCGTGTTT-GAGAGCTGTCTCCAGGGTTTCC---TCGGGCGTGTG-CGTGTGTATGTGT----------------GAG-AAATGGTTGG-GACTTATC-CTTCCTACCTTAGATGACCTCC----TTGTTCCCCCAGAGGTCATGAG--------------------------------------------------------------------------------------------CTCTGGGGATCAGT-GGCC------G-G-AGCCTGTCTCCCG
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20      28047823 347 -  46401353 AAGTAATCTCATTTCCTTTGACTGAAATTCATTCACACTGCCTGTTACAGGCCA----TTTGCCCTTTATTTCTGTTTCTAAAATGAAAAACTCTTCCTGTTAAAGGAACCACAGAT-ATCAGCCAACAGAG-------------GAGA---GAGAAAAT---GAG-AAGTATAAGTGAGCTTCTGTCCCATGG-TTTTGACCTCATACTATGCTT-TAGAATTATCTTCAATATTTAT----------TCTGATATGTGTGTATGTTCTAAGATAATTTTGGGAG-AAAAGGTTAGCAGTTTATCTTTCCCTACCTCATATGACTTCC----CTATTCCCCCAGGGATTGTGAG--------------------------------------------------------------------------------------------GTCTGGAAAGCAGC-TGTT------GGA-AGCCTGTTTCCTG
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10396777 361 +  24341844 AAGTAATCTAATTTCCTTTGACTGAAATTCATTCACACTGTCTGTCACAGGCCA----TTTGCCCTTTATCTGTATTTCTAAAATGAAAAACTCTTCCTATTAAAGAAACCACAGAT-ATCAGCCAACAGAGGAGAATCTTC-CTGAGA---GATAAAATGAGGAG-AGGTATAAGTGAGCTTCTTTCTCATGG-TTTTGACCTCATACTGTGCTT-TAGAATGATCTCCAATGTTTAG----------GCTGCTGTGTGTGTGTGTTCTAAGATAA-CTTGGGAG-AAAAGGTTGACAGTTTATCTTTTCTTACCTCATATGACCTCC----CTATTCCCCCAGGGATTGTGAG--------------------------------------------------------------------------------------------GTCTGGAAAGCAGC-TGTT------GCA-AGCCTGTTTCCTG
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436          1563912 343 -   2788317 AGATAATCTAATTTCATTTAACTGAAATTCATTCACACTGTC----ACAGGACA----TTTACCTTTTATCTCTATTTGTGAAATGAAAAACTGTTCCTGTTAAAGGTATTAAAGAT-ATCAGTGAACAGAGGAGAATCTTTAATGAGA---GATAGGAA---AAGAAAGTATGAGTGAACTTCTTTCTCTTGG-TTTTGACTTCATTCTATATTTATAGAACTGTCGCTAAAGTTTAT----------TTTGCTGTGTGTGTGTCTTT--AGGTTATTTAGGACG-AAAAGCTTGGTGGTTCATCTTTTCCTACCTCTGGCGACCTCCTTATTTATTCCCCCATAGATTGTAAG--------------------------------------------------------------------------------------------CCC------------------------A-AGCCTATTTCCTG
i dasNov3.JH567436         I 572 C 0
e orcOrc1.KB316907         11148669   0 +  17242564 C

a score=364741.000000
s hg38.chr8_KI270814v1_alt    16418 78 +    141812 GGACCTGTGTGGTGCGGAG-GGTCCGAGAGCGTTTTTGGC----CTG----TCTCTCTGTCACTGCAGCCTGG-----CATAAGCTTGCTTG
s panTro4.chr8             54957425 78 + 143986469 GGACCTGTGTGGTGCGGAG-GGTCTGAGAGCGTTTTTGGC----CTG----TCTCTCTGTCACTGCAGCCTGG-----CATAAGCTTGCTTG
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58994955 78 + 153482349 GGACCTGTGTGGTGCGGAG-GGTCCGAGAGCGTTTTTGGC----CTG----TCTCTCTGTCACTGCAGCCTGG-----CATAAGCTTACTTG
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48087391 74 + 100215132 GGACCTGTGTTGTGCGGAG-GGTCCGAGAGCGCTTTTGGC------------CTCTCTGTCACTGCAGCCTGG-----CATAAGCTTGCTTG
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61638213 78 + 150158102 GGACTTGTGTGGTGCAGAG-GGTCTGAGAGCATTTTTTGC----CTG----TCTCTCTGTCACTGCAGCCTGG-----CATAAGCTTGCTTG
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58311112 78 + 146850525 GGACTTGTGTGGTGCAGAG-GGTCTGAGAGCATTTTTTGC----CTG----TCTCTCTGTCACTGCAGCCTGG-----CATAAGCTTGCTTG
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53237023 78 + 139301422 GGACTTGTGTGGTGCAGAG-GGTCTAAGAGCGTTTTTTGC----CTG----TCTCTCTGTCACTGCAGCCTGG-----CATAAGCTTGCTTG
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       9896 78 +    110629 GGACCTGTGTGGTGCAGAG-GGTCTGAGAGCGTCTTTGGC----CTG----TATGTTTGGCACTGCAGCCTGG-----CATAAGCTTTATTG
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2748545 78 +  10880647 GGACCTGTATGGTGCAGAG-GGTCTGAGAGTGTCTTTGGT----CTG----TATGTCTGTCACTGCAGCCTGG-----CAGAAGCTTGATAG
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21550751 55 -  23169006 GGA---------GACAGAGCCGTGTGTAGGCATCTTTGGC----CTG------TCTCTGTAGCTGCAGCCCAG-----C-------------
i otoGar3.GL873541         C 0 C 0
s equCab2.chr15            84380217 85 +  91571448 GGACCTGTGCA--GAAGAG-CGAAGGGGACCATTTTTGGC----CTGACTCTTTCTTTGTAGCTGCAGCCCAGAGACCCACAGGCTTGCTTG
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7118907 86 -  14545593 GGACCTGTGTAGTGTAGAG-GGAAGGAGAACATTTTTGGC----ACGACTCTCTCTTTGTAGCCACAGCCCCGAGACCTGTA-GCTTGCTTG
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19644884 66 -  23789964 GGACCCGTGCTGTGCGGAG-GGCGGA------------------------CTCTCTCTGTCGCTGCAGCCCCGAGACCCGGA-GCTGGCTCG
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20      28048170 85 -  46401353 GGACCTGTTCAGCATAGAG-GATAGGAGAGCTTTTTGGACACAGCTG----TTTC-TTGTAGCTGCAGCCCAGAGAC-CTGGAGCTTGCTTG
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10397138 86 +  24341844 GGACCTGTTCAGTGTAGAG-GATAGGAGACCTTTTTTGACACCGCTG----TCTCTTTTTAGCTGCCGCCCAGACAC-CTGGAGCCTGCTTG
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436          1564255 86 -   2788317 GGACCTGTTCAATGTAGAG-AATAGGCAGGCTTTTTCAGCACCACTT----TCTCTTTATAGTTGCAGCCCAGAGAC-CTGGAGCTTGCTTG
i dasNov3.JH567436         C 0 C 0
e speTri2.JH393342          4222416 182 -   9676502 I
e orcOrc1.KB316907         11148669  0 +  17242564 C

a score=1074178.000000
s hg38.chr8_KI270814v1_alt    16496 233 +    141812 CTTCAGCG-TACATCCTGA--------AGCTGTGCCCCA--GCCCTGATCACCTT-------------GTCCTAGAG-----------------------------CCTCCC--TT--CATCCCTCTTTCAC-A-------AGACATCTTTCACCTGTGC-TCC-CCACT----------GTGGTTGATGCCATCTGACT--CTGTCCT-TCCATTTTCTTTGGCCTCAGCACT-------------CACAGGATATC----------------------TGACTCCA-GGCCAG-GAGGA-GTGAGCAGCAGGATTT-ACTTGAGGGCCACTTC-GCTGGAGCTTCGGTCCT
s panTro4.chr8             54957503 255 + 143986469 CTTCAGCG-TACATCCTGA--------AGCTGTGCCCCA--GCCCTGATCACCTT-------------GTCCTAGAG-----------------------------CCTCCC--TT--CATCCCTCTTTCAC-A-------AGACATCTTTCACCTGTGC-TCC-CCACT----------GTGGTTGATGCCATCTGACT--CTGTCAT-TCCATTTTCTTTGGCCTCAGCACT-------------CACAGGATATCGGACTCCAGGCCACAGGATATCTGACTCCA-GGCCAG-GAGGA-GTGAGCAGCAGGATTT-ACTTGAGGGCCACTTC-GCTGGAGCTTCGGTCCT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58995033 255 + 153482349 CTTCAGCG-TACATCCTGA--------AGCTGTGCCCCA--GCGCTGATCTCCTT-------------GTCCTAGAG-----------------------------CCTCCC--TT--CATCCCTCTTTCAC-A-------AGACATCTTTCACCTGTGC-TCC-CCACT----------GTGGTTGATGCCATCTGACT--CTGTCCT-TCCATTTTCTTTGGCCTCAGCACT-------------CACAGGATATCTGACTCCAGGCCACAGGATATCTGACTCCA-GGCCAG-GAGGA-GTGAGCAGCAGGATTT-ACTTGAGGGCCACTTC-GCTGGAGCTTCGGTCCT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48087465 233 + 100215132 CTTCAGCG-TACATTCTGA--------AGCTGTGACCCA--GCCCTGATCTCCTT-------------GTCCTAGAG-----------------------------CCTCCC--TT--CATCCCTCTTTCAC-A-------AGACATCTTTCACCTGTGC-TCC-CCACT----------GTGGTTGATGCCATCTGACT--CTGTCCT-TCCATTTTCTTTGGCCTCGGCACT-------------CACAGGATATC----------------------TGACTCCA-GGCCAG-GAGGA-GTGAGCAGCAGGATTT-ACTTGAGGGCCGCTTT-GCTGGAGCTTTGGTCCT
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61638291 237 + 150158102 TTTCAGCA-TACATCCTGA--------AGCTGTGCCCCA--GCCCTGATCACCTT-------------GTCGTAGAG-------------------------CCTCCCTCCC--TT--CATCCCTCTTTCAC-A-------AGACATCCTTCACCTGTGC-TCC-CCACT----------GTGGTTGATGCCATCTGACT--CTGTCCT-TCCATTTTCTTTGGCCTCAGCACT-------------CACAGGATATC----------------------TGACTCCA-GGCCAG-GAGGA-GTGAGCAGCAGGATTT-ACTTGAGGGCCACTTT-GCTGGAGCTTCAGGCCT
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58311190 237 + 146850525 TTTCAGCA-TACATCCTGA--------AGCTGTGCCCCA--GCCCTGATCACCTT-------------GTCGTAGAG-------------------------CCTCCCTCCC--TT--CATCCCTCTTTCAC-A-------AGACATCCTTCACCTGTGC-TCC-CCACT----------GTGGTTGATGCCATCTGACT--CTGTCCT-TCCATTTTCTTTGGCCTCAGCACT-------------CACAGGATATC----------------------TGACTCCA-GGCCAG-GAGGA-GTGAGCAGCAGGATTT-ACTTGAGGGCCACTTT-GCTGGAGCTTCAGGCCT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53237101 237 + 139301422 CTTCAGCA-TACATCCTGA--------AGCTGTACCCCA--GCCCTGATCACCTT-------------GTCCTAGAG-------------------------CCTCCCTCCC--TT--CATCCCTCTTTCAC-A-------AGACATCTTTCACCTGTGC-TCC-CCACT----------GTGGTTGATGCCGTCTGACT--CTGTCCT-TCCATTTTCTTTGGCTTCAGCACT-------------CACAGGATATC----------------------TGACTCCA-GGCCAG-GGGGA-GTGAGCAGCAGGATTT-ACTTGAGGGCCACTTT-GCTGGAGCTTCAGGCCT
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       9974 228 +    110629 CTTCAGCA-TACATCCTGA--------GGCT-----CCA--GCCCTGATCTCCTT-------------GTTCTAGAG-----------------------------TCTCCC--TT--CATCCCTCTTTTAC-A-------AGACCTCTGTCACCTGTGT-TCC-CCTCT----------GTGGTTGATGCCATCTGACT--CTGTCCT-TCTATTTTCTTTGGCCTCAGCACT-------------CATAGGATGTC----------------------TGACTGCA-GGCCAG-GAGGA-GTGAGCAGCAGGATTT-AGTTGAGGGTCACATT-GCTGGGGCTTCGGGCTT
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2748623 222 +  10880647 CTTCAGCA-TACATCCTGA--------GGCT-----CCA--GCTCTGAT---CTT-------------GTCCTAGAG-----------------------------CCTCCC--TT--CATCCCTCTTTTGC-A-------AGACATCTTTCACCTGAGC-TCC-CCTCT----------GTGGTTGATGCCATCTGACT--CTGTC----CTGTTTTCTTTGGCCTCAGCACT-------------CATAGGATATC----------------------TGACTGCA-GGCCAG-GAGCA-GTGAGCAGCAGGATTT-AGTTGAGGGTCACATT-GCTGGGGCTTCGGGCCT
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21550806 207 -  23169006 --------------------------------TGCCCCA--GTCTCAGGCTCCCT-------------GTCCTGGGG-----------------------------GCTCCC--TT--CGTCCCTCTGCCGT-A-------AGATACCTTTCCTCTGTG--TCT-CCCCC----------GGGGTTGATTCCACAGGACT--CTGTGCT-TCCATTTCCTTTGGCC-CAGCACT-------------CTCAGAACTGC----------------------TCACTCCA-GGCCGG-AAGGA-GTGAG-GGTGGGATTT-AGTTGAGGGCCTCTTTGGCTGGTGCTT-GGGCCT
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4222598 271 -   9676502 tctcagcaGTGCCTCCTGGATGGTAGCAGCTGAGGTCCATTGGCCTGGTGGTCTCTAATTGGAGCTGGGGCCCAGAGGCTGGGAGCTGTGTCACCTCCAGTCTCTGTTCCCT--TC--CATTCATCTGCCTT-A-------GGACACTTTCTGCCC-TGC-TCAGCCCCT----------TTTATGGATTCCATCTAGCT--CTGTCCTGTCCATTCCTTTTGGCCTCAGCGGT-------------CACAGGACCTC----------------------TGACTCTG-GAGCAG-GGGGAGGTGAGTGATGGGATTT------------------GCTGGGGCTTCAAGC-T
i speTri2.JH393342         I 182 C 0
s equCab2.chr15            84380302 237 +  91571448 C-TGAAAA-TAAGTCCTGA--------AGTT-TGCCACA--G-CCCGGTCTCCCT-------------GCCCTGGAA-------------------------AC--CCTCCC--TTTCCAGCCATCTGTC-C-C-------AGACATCTTCC---------CCT-GGAGT----------ATGAAGAGTTCCATCTCACT--CTGTCCTGTCAGTTTCTTTTGGCCTCGATGCTGGGTTG-TTAGCCTACAGGACACC----------------------TGACTCCA-GAGTGGGGAGCC-ATGGGCAGCGGGATTT-TCTTGAGGACCGCTTA-GCTAGGACATTGG--CT
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7118993 239 -  14545593 CTTTAGCA-TAAGTCCTGA--------AGTT-TGTCCCA--GCCCCAGTCTCCCT-------------GTCCTGGGA-------------------------A---CCTCCC--TTCCCAGCCATTTGTCAC-C-------AGACAGCTTTC---------CCT-GGACT----------ATGAAACATTCCATCTCAAT--CTGACTTGTCAGTTTCTTTTGGCCTTGATGCTGGGTTG-TTAGCTCACAGTGCATC----------------------TGACTCCC-GGGCGGCGAACA-GTGAGCAGTGAGATTT-ACTTGAGGACAACTTA-GCTAGGACTTTGG--CT
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19644950 225 -  23789964 CTTCAGCA-TAAGCTCTGC--------AGTT-TGCCCCG--GCCCCAGTCTCCCT-------------GTGCTGGGA-------------------------AC--CCTCTC--TGCCCAGCCTCCCGTCAC-C-------GCACACCTTTC---------CCT-GGGCT----------GCAAGACGTT-TGTCTCACT-----GCCTGCCAGTTTCTTTTAGCCTCCATGCTGGGGTG-TCGGTCCCCAGGACACG----------------------TGCCCCCA-GGGCGGGGAGCA-GTGAGCAGCGGGACTC-ACT---GAGCAGAGTA-CCTTGTA----------
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20      28048255 255 -  46401353 CTTCAGCA-TAAATCCTGA--------AGATAAGCCCC-------CAGTCTCCTT-------------GTCCTGGGA-------------------------AC--CCTCCC--TTCCCATCCATCTGTCAC-AGATACCTAAACACCTTTCCCTTATGC-TAG-CCGCCCG--------TCCCGTGTTGACCTCCCACT--CTGTACTGTCCATTTCTTTTGGTCTCAGTCATGGATTGTTTAGATCGCAGGACATC----------------------TGACTTCA-TGTGGG-GAGCA-GTGAGCAGCTGGACTT-GCTGGAGCGCCGCTTA-GCCAGGGCTTCAGGCCT
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10397224 261 +  24341844 CTTCAGCG-TAAATCCTGA--------AGATATGTCCCA--GCCTCAGTCTCCTT-------------GTACTGGGA-------------------------AC--CCTCGC--TTCCCATCCATCTGTCGC-AAATACCTAAACACCTTTCCCTTGTGC-TGC-CTGCCT---------TCCCGTGTTGATTTCCCACT--CTGTACTGTCCATTTCCTTTGGTCTCATTGATGGATTGTTTAGATCACAGGACATC----------------------TGACTCCACTGTGGG-GAGCA-GTGAGCAGTTGAACTTGGCTGGGGCACCACTTA-GCCAGGGCTTTGAGCCT
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436          1564341 264 -   2788317 CCTCAGCA-TAAGTCCTTT--------AAATGTGCCCCA--GCCCCGGTCTCCCT-------------ATGCTGGCA-------------------------GC--CTTCTCCGTTTCCATCCATCTGTCATGAGATACCTAGACACCTTTCCTCTGTGCACCC-CCACCCAACTCTGCCCTCCATGTTGATTTCCATCTGACTGTATTATCAGTTTCTTTTGGCCTTCCGGTCAGATTGTTTAGCTCACAGGACATC----------------------TGACTCCAGGGCGGG-AAAC-----------TCGATTT-ACTCAGGGACCTCTTA-ACCAGGGCTTT-TTCCT
i dasNov3.JH567436         C 0 I 1
e orcOrc1.KB316907         11148669   0 +  17242564 C

a score=280315.000000
s hg38.chr8_KI270814v1_alt    16729 46 +    141812 CCATC-AGATTCAGCTGTGGAGTGTGTTCCTCAGGCACAGAATGTGG
s panTro4.chr8             54957758 46 + 143986469 CCATC-AGATTCAGCTGTGGAGTGTGTTCCTCAGGCACAGAATGTGG
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58995288 46 + 153482349 CCATC-AGATTCAGCTGTGGAGTGTGTTCCTCAGGCACAGGATGTGG
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48087698 46 + 100215132 CCATC-AGATTCAGCTGTGGAGTGTGTTCCTCAGGCACAGGATGTGG
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61638528 46 + 150158102 CCATT-AGATTCAGCTGTGGAGTGTGTTCCTCTGGCACATGATATGG
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58311427 46 + 146850525 CCATT-AGATTCAGCTGTGGAGTGTGTTCCTCTGGCACAGGATATGG
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53237338 46 + 139301422 CTATT-GGATTCAGCTGTGGAGTGTGTTCCTCAGGCACAGGATGTGG
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234      10202 45 +    110629 CCATC-GGGTTTAGCTGTGGAGTGTGTTTCTCAGGCACAGGTTGT-G
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2748845 46 +  10880647 CCATC-GGCTTTAGCTGTGGAGTGTGTTTCTCAGGCACAGGTCGTGG
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21551013 46 -  23169006 TCATT-GGGATCAGCTCTGGAGCACGTTCCTCAGGCTTAAAAGGTGG
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4222869 46 -   9676502 CTAGT-GGCTTTGTCAGTGGGACAGGTTTCTCGGGTATGATACATAG
i speTri2.JH393342         C 0 C 0
s equCab2.chr15            84380539 47 +  91571448 CCAGTGGGGTTTAGCTGTGGAGCGAGTTCCTCATGCAGAAGGTGTGG
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7119232 46 -  14545593 CCAAC-GGGTTTAGCTATGGAGCGAGTTCCTCAGGCAGAAGGCGTGG
i cerSim1.JH767782         C 0 I 2
s pteAle1.KB030580         19645175 37 -  23789964 ------GGGCTCGG----GGAACATGTGCCTCATGCAGAAGGTGGGG
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20      28048510 46 -  46401353 CAGAC-GGGTTCAGCTGTGGAGTATGGTCCTCAGGCCAGAGACGTGG
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10397485 46 +  24341844 CAGAC-GGGTTCAGCTGTGGAGCATGGTCCTCAGGCCTAAGACATGG
i triMan1.JH594629         C 0 C 0
e dasNov3.JH567436          1564605  1 -   2788317 I
e orcOrc1.KB316907         11148669  0 +  17242564 C

a score=116699.000000
s hg38.chr8_KI270814v1_alt    16775 30 +    141812 GCGTGGTGGACAAGTGGAGTGTGTCAGAGT
s panTro4.chr8             54957804 30 + 143986469 GCGTGGTGGACAAGTGGAGTGTGTCAGAGT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58995334 30 + 153482349 GCGTGGGGGACAAGTGGAGTGTGCCAGAGT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48087744 30 + 100215132 GCGTGGGGGACAAGTGGAGTGTGTCAGAGT
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61638574 30 + 150158102 GTGTGGGGGACAAGTGGAGTGTGTCAGAGT
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58311473 30 + 146850525 GTGTGGGGGACAAGTGGAGTGTGTCAGAGT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53237384 30 + 139301422 GTGTGGGGGACAAGTAGAGTGTGTCAGAGT
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234      10247 30 +    110629 CTGTGTGGGACAAGTAGACTGTGTCAGAGT
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2748891 30 +  10880647 GTGTGTGGGACAAGTAGACTGTGTCAGAGT
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21551059 29 -  23169006 GTG-GGGGAACAAGTAGACTGCATCATTGT
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4222915  3 -   9676502 GTG---------------------------
i speTri2.JH393342         C 0 C 0
s cerSim1.JH767782          7119280 29 -  14545593 -GGGAGGGGGCAAGTGGACTGTATCCAAGT
i cerSim1.JH767782         I 2 C 0
s pteAle1.KB030580         19645212 29 -  23789964 -AGGGGGTGGCAAATAGACCGCGTCCACGC
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20      28048556 29 -  46401353 GTG-GAAGAGCAAGTGAACTACATTGAGGT
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10397531 29 +  24341844 GTG-GAAGGGCAAGTGACCTATCTCGAGGT
i triMan1.JH594629         C 0 C 0
e dasNov3.JH567436          1564605  1 -   2788317 I
e equCab2.chr15            84380586  0 +  91571448 C
e orcOrc1.KB316907         11148669  0 +  17242564 C

a score=242456.000000
s hg38.chr8_KI270814v1_alt    16805 54 +    141812 AGGAAAGGACAGAATTGAGGTTAAATCCCTGAGATGCA--TGAACATCA-GTCTCAA
s panTro4.chr8             54957834 54 + 143986469 AGGAAAGGACAGAATTGAGGTTAAATCCCTGAGATGCA--TGAACATCA-GTCTCAA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58995364 54 + 153482349 GGGAAAGGACAGAATTGAGGTTAAATCCCTGAGATGCA--TGAACATCA-GTCTCAA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48087774 54 + 100215132 GGGAAAGGACAGAATTGAGGTTAAATCCCTGAGATGCA--TGAACATCA-GTCTCAA
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61638604 54 + 150158102 GGGAAAGGACACAATTGGGGTTAAATCCCTGAGATGCA--TAAACACCA-GTCTCAA
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58311503 54 + 146850525 GGGAAAGGACACAATTGGGGTTAAATCCCTGAGATGCA--TAAACACCA-GTCTCAA
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53237414 54 + 139301422 GGGAAAAGACAGAATTGGGGTTAAATCCCTGAGATGAA--TGAACACCA-GTCTCAA
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234      10277 54 +    110629 GGGAAGGAACAGAACTGAGTTTAAATCCCTGAGATGCA--TGAATTTCA-GCCTCAG
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2748921 54 +  10880647 GGGAAGGGACAGAATTGAGTTTAAATCCCTGAGATGCA--CAAATATCA-GCCTCAG
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21551088 52 -  23169006 --GATGGAAAAGAATTGTGGTTAAACCCCTGAGATGCA--TGGATATCG-GCCTCTA
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4222918 51 -   9676502 ----AGAACCAGGGTCACAGCAAATCTCTTGGGGTGCA--CGAATATCAGGCCTCAT
i speTri2.JH393342         C 0 C 0
s pteAle1.KB030580         19645241 26 -  23789964 --GAAGGAGC--------------------------CA--TGTGCATCA-CACtcag
i pteAle1.KB030580         C 0 I 43
s loxAfr3.scaffold_20      28048585 56 -  46401353 GTGAAGGGAAAAAATTGAGGTTAATGTCCTGAGATGCATGTGAGTACCA-GTCTTAA
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10397560 56 +  24341844 GTGAAGGAAAAGAATCAAGGTTAATTACCTGAGATGCATGTGAGTATCA-GTCTTAA
i triMan1.JH594629         C 0 C 0
e dasNov3.JH567436          1564605  1 -   2788317 I
e equCab2.chr15            84380586  0 +  91571448 C
e cerSim1.JH767782          7119309  0 -  14545593 C
e orcOrc1.KB316907         11148669  0 +  17242564 C

a score=274007.000000
s hg38.chr8_KI270814v1_alt    16859 61 +    141812 TTTA-TAGAAAGATCTCTTCACTCTTTTGTGGTAGACAGAATTCCAGTAAACGCTGTGAATT
s panTro4.chr8             54957888 61 + 143986469 TTTA-TAGAAAGATCTCTTCACTCTTTTGTGGTAGACAGAATTCCAGTAAAGGCTGTGAATT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58995418 61 + 153482349 TTTA-TAGAAAGATCTCTTCACTCTTTTGTGGTAGACAGAATTCCAGTAAAGGCTGTGAATT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48087828 61 + 100215132 TTTA-TAGAAAGATCTCTTCACTCTTTTGTGCTAGACAGAATTCCAGTAAAGGCTGTGAATT
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61638658 61 + 150158102 TTTA-TAGAAATATCTCTTCACTCTTTTGTGGTAGACAGAATTCCAGTAATGGCTGTGAATT
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58311557 61 + 146850525 TTTA-TAGAAATATCTCTTCACTCTTTTGTGGTAGACAGAATTCCAGTAATGGCTGTGAATT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53237468 61 + 139301422 TTTA-TAGAAATATCTCTTCACTCTTTTGTGGTAGACAGAATTCCAGTAACGGCTGTGAATT
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234      10331 58 +    110629 TTTA----GCAGATCTCTTCAGTATTTTGTTGTAGACAGAATTCCAGTAAAGGCTTTGAATT
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2748975 58 +  10880647 TTTA----GCAGATCTCGTCACTATTTTGTGGTAGACAGAATTCCAGTAAAGGCTGTGAATT
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21551140 61 -  23169006 TTTAGTAGAAAGATTGCTTTGTGGTTTTGCGGTAGACAG-TTTTCAGTGATGTCTGTCAATT
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4222969 60 -   9676502 TTTG-GGGGAAGATGACCT-GGTGGTTTGTGGTGGGCAGGATTCCAGCAGGGGCTGTTAGTT
i speTri2.JH393342         C 0 C 0
s loxAfr3.scaffold_20      28048641 62 -  46401353 TTTAGCAGAAAGATCACTTCATGATTTCGTGGTAGAGAAAGTTCCAGTCAGGGCTATTAATT
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10397616 62 +  24341844 TTTAGTAGCAAGATCACTTCATGACTTTGTGGTAGAGAAAATTCCAGTAAGGGCTATTAATT
i triMan1.JH594629         C 0 C 0
e dasNov3.JH567436          1564605  1 -   2788317 I
e equCab2.chr15            84380586  0 +  91571448 C
e pteAle1.KB030580         19645267 43 -  23789964 I
e cerSim1.JH767782          7119309  0 -  14545593 C
e orcOrc1.KB316907         11148669  0 +  17242564 C

a score=32568.000000
s hg38.chr8_KI270814v1_alt    16920 5 +    141812 GTGAA
s panTro4.chr8             54957949 5 + 143986469 GTGAA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58995479 5 + 153482349 GTGAA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48087889 5 + 100215132 GTGAA
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61638719 5 + 150158102 GTGAA
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58311618 5 + 146850525 GTGAA
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53237529 5 + 139301422 GTGAA
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234      10389 5 +    110629 TTGAC
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2749033 5 +  10880647 TTGAA
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21551201 5 -  23169006 GTGAA
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4223029 5 -   9676502 GTGCA
i speTri2.JH393342         C 0 C 0
s cerSim1.JH767782          7119309 5 -  14545593 GTGAA
i cerSim1.JH767782         C 0 C 0
s loxAfr3.scaffold_20      28048703 5 -  46401353 GTGAA
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10397678 5 +  24341844 GTGAA
i triMan1.JH594629         C 0 C 0
e dasNov3.JH567436          1564605 1 -   2788317 I
e equCab2.chr15            84380586 0 +  91571448 C
e pteAle1.KB030580         19645267 43 -  23789964 I
e orcOrc1.KB316907         11148669 0 +  17242564 C

a score=408315.000000
s hg38.chr8_KI270814v1_alt    16925 117 +    141812 ATCAGGCCatt-------------------tgtttatttgttcattcatttattcatcttatttattAGACCAACTTCGCACCCCTCTCTTACGTCCTAGGCACTGT-CTGGCAGCTtccccgctg-aggagttcagt
s panTro4.chr8             54957954 117 + 143986469 ATCAGGCCatt-------------------tgtttatttgttcattcatttattcatcttatttattAGACCAACTTCGCACCCCTCTCTTATGTCCTAGGCAATGT-CTGGCAGCTTCCCCGCTG-AGGAGTTCAGT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58995484 117 + 153482349 ATCAGGCCatt-------------------tgtttattagttcattcatttattcatcttatttattAGACCAAATTCCCACCCCTCTCTTACGTCCTAGGCACTGT-CTGGCAGCTtccccgctg-aggagttcagt
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48087894 117 + 100215132 ATCAGGCCatt-------------------tgtttattagttcattcatttattcatcttatttattAGACCAACTTCGCACCCCTCTCTTACGTCCTAGGCACTGT-CTGGCAGCTTCCCTGCTG-AAGaattcagt
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61638724 117 + 150158102 ATCAGGCcatt-------------------tgtttattggttcattcattcattcatctcatttattAGACCAACTTCACACCCCTCTCTTATGTCCTAGGCACTGT-CCAGCAGCTTCCCCGCTG-AGGagttcagt
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58311623 117 + 146850525 ATCAGGCcatt-------------------tgtttattggttcattcattcattcatctcatttattAGACCAACTTCACACCCCTCTCTTATGTCCTAGGCACTGT-CCAGCAGCTTCCCCGCTG-AGGAGTTCAGT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53237534 116 + 139301422 ATCAGGCCatt-------------------tgtttattggttcattcatttattcatcttatttattAGACCAACTTCACACCCCTCTCTTATGTCCTAGGCACTTT-CCAGCAGCTTCTCC-CTG-AGGagttctgt
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234      10394 136 +    110629 ATCGGGCCATTTCACAACTGAATACATGAATGTTCATTGGTTCattcatttattcatcttatttgttagacccactttgcaccccttgcttatgttgtaggcactgt-gctgcagcttcccctcca-cggagttcagc
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2749038 135 +  10880647 ATCAGGCCATTTCACAATTGAATAGATGAATGTTCATTGGTTCATTCATTTATTCATCTTATTTGTTAGACCCTC-TTGCACCCCTGGCTTATGTCGTAGGCACTGT-GCTGCAGCCTCACCTCCA-CAGAGTTCAGT
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21551206  72 -  23169006 ATCAGGCTGTT-------------------TATTCCTTGGTTCATTGATTCCTT-GTCTTATTCCTTAGACCGTCTTCACACCCTTTCTATA----------------------------------------------
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4223034 107 -   9676502 GTCA-GTCATT-------------------TGTTTATTGACATCTGCATCTGTTCTT----TTCACTAGA-CGACTTGGGACCCTTC-CACGGGTGCCAGGC--TGT-CCCCCAGCCTCTTCCCTC-AGG-GTTGAGG
i speTri2.JH393342         C 0 C 0
s loxAfr3.scaffold_20      28048708 111 -  46401353 ATTAGGC-----------------------TATTTATTGGTTCA----TTCATTTATTTTATTTATTGGACCAAGTTAGCAACCCCCTGCTGTGTATTAGACACTGTACCTGcggcttcttccctgaaggagttcagt
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10397683 115 +  24341844 ATTAGGT-----------------------TATTTATTGGTTCATTCGTTCATTTATTTTATTTATTGGACCAAGTTAGCCACTCCCTGCTGTGTGTTAGGCACTGTACCTGCAGCTTCTTCCCTGAAGGAGTTCAGT
i triMan1.JH594629         C 0 C 0
e dasNov3.JH567436          1564605   1 -   2788317 I
e equCab2.chr15            84380586   0 +  91571448 C
e pteAle1.KB030580         19645267  43 -  23789964 I
e cerSim1.JH767782          7119314   0 -  14545593 C
e orcOrc1.KB316907         11148669   0 +  17242564 C

a score=20228.000000
s hg38.chr8_KI270814v1_alt    17042 6 +    141812 atggtg
s panTro4.chr8             54958071 6 + 143986469 ATGGTG
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58995601 6 + 153482349 attgtg
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48088011 6 + 100215132 atggtg
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61638841 6 + 150158102 gtggtg
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58311740 6 + 146850525 GTGGTG
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53237650 6 + 139301422 gtggtg
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234      10530 6 +    110629 atggtg
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2749173 6 +  10880647 ATGGTG
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21551278 4 -  23169006 --GGTG
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4223141 6 -   9676502 CTGGGG
i speTri2.JH393342         C 0 C 0
s equCab2.chr15            84380586 5 +  91571448 ATGGG-
i equCab2.chr15            C 0 C 0
s loxAfr3.scaffold_20      28048819 6 -  46401353 ctggta
i loxAfr3.scaffold_20      C 0 C 0
e dasNov3.JH567436          1564605 1 -   2788317 I
e triMan1.JH594629         10397798 0 +  24341844 C
e pteAle1.KB030580         19645267 43 -  23789964 I
e cerSim1.JH767782          7119314 0 -  14545593 C
e orcOrc1.KB316907         11148669 0 +  17242564 C

a score=288111.000000
s hg38.chr8_KI270814v1_alt    17048  85 +    141812 ggaggcatgtgaacacacattttaatactgtgtgctaag------------agctctggtaggagagagt-----ttgtaagaataactaacccaactagca
s panTro4.chr8             54958077  85 + 143986469 GGAGGCATGTGAACACACATTTTAATACTGTGTGCTAAG------------AGCTCTGGTAGGAGAGAGT-----TTGTAAGAATAACTAACCCAACTAGCA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58995607  85 + 153482349 ggaggcatgtgaacacacattttaatactatgtgctaag------------agctctggtaggagagagt-----ttgtaagaataactaacccaactagca
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48088017  85 + 100215132 ggaggcatgtgaacacacattttaatactatgtgctaag------------agcactggtaggagagagt-----ttgtaagaataactaacccaactagca
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61638847  85 + 150158102 ggaggcatgtgaacacacattttaataccgtgtgctaag------------aggtctggtaggagagagt-----tcgtaagaataactaacccaactagca
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58311746  85 + 146850525 GGAGGCATGTGAACACACATTTTAATACCGTGTGCTAAG------------AGGTCTGGTAGGAGAGAGT-----TCGTAAGAATAACTAACCCAACTAGCA
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53237656  85 + 139301422 ggaggcatgtgaacacacattttaatactgtgtgctaag------------aggtctggtaggagagagt-----tcgtaagaataactaacccaactagca
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234      10536  85 +    110629 ggaggcatgtgatcacacagtttaatactgtgtggtaag------------agcggtggtaggagagagt-----tcataagaataactaacccagctagga
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2749179  83 +  10880647 GGAGGCATGTGA--ACACAGTTTAATACTGTGTGGTAAG------------AGCAGTGGTAGGAGAGAGT-----TCATAAGAATAACTAACCCAGCTAGGA
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21551282 102 -  23169006 ATGGGTGTGTGAACTCTTGCTGTAACATTTTATGCTAAACGCTCTGGGATTAGCTCTGGGGGAGGAGAGTTTATATTATAGGAATAGCCAATCTAACCGGGA
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4223147  66 -   9676502 GGAGGTGTGTGAGTGCACACTTTAAGCCTGTGC------------------AGCTT---------AAAGT---------AGAAATGGCTGACCCACCCAGGA
i speTri2.JH393342         C 0 C 0
s equCab2.chr15            84380591  43 +  91571448 AGGGGCAAGTGG--------------ACTGTGT-CCAAG--------------------TGTGAAGGAGC-----C-------------------GCGAGCA
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7119314  13 -  14545593 -----------------------------------------------------------------GGAGG-----C-------------------ACGAGCA
i cerSim1.JH767782         C 0 C 0
s loxAfr3.scaffold_20      28048825  84 -  46401353 ggaggtgtatacatacacattttcatgtagtgtgttaag------------tgctctgatggaggagtgt-----tcacaggagtagctaaccc-actatca
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10397798  69 +  24341844 ---------------CACATTTTCCTATAGTGTGTTAAG------------TGCTCTGATGGAGGAGAGT-----TCATAGCACTAGTTAACCC-ACCGTGA
i triMan1.JH594629         C 0 C 0
e dasNov3.JH567436          1564605   1 -   2788317 I
e pteAle1.KB030580         19645267  43 -  23789964 I
e orcOrc1.KB316907         11148669   0 +  17242564 C

a score=48274.000000
s hg38.chr8_KI270814v1_alt    17133 10 +    141812 gcaagcaact
s panTro4.chr8             54958162 10 + 143986469 GCAAGCAACT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58995692 10 + 153482349 gcaagcaact
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48088102 10 + 100215132 gcaagcaact
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61638932 10 + 150158102 gcaagcaact
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58311831 10 + 146850525 GCAAGCAACT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53237741 10 + 139301422 gcaagcaact
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234      10621 10 +    110629 gcgagcaact
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2749262 10 +  10880647 GAAAGCAACT
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21551384  9 -  23169006 GCAAA-AACT
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4223213 10 -   9676502 GCCAGGAGAA
i speTri2.JH393342         C 0 C 0
s equCab2.chr15            84380634  7 +  91571448 ACAAACA---
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7119327  7 -  14545593 ACAAACA---
i cerSim1.JH767782         C 0 C 0
s loxAfr3.scaffold_20      28048909 10 -  46401353 gcaagaacct
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10397867 10 +  24341844 GCAAGAAACt
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436          1564606 10 -   2788317 GCAAGAAACT
i dasNov3.JH567436         I 1 C 0
e pteAle1.KB030580         19645267 43 -  23789964 I
e orcOrc1.KB316907         11148669  0 +  17242564 C

a score=814481.000000
s hg38.chr8_KI270814v1_alt    17143 146 +    141812 caggcaacagcttcctgcgggatgtcatgcgtgaattagatac---------gaggacccc-aaggagctgaagaggtaac---atgggaggattttact-g-cagggtggacagcacaggcaaaggcatggaggcatgaaacagcatggcgtggaagcac
s panTro4.chr8             54958172 146 + 143986469 CAGGCAACAGCTTCCTGCGGGATGTCATGCGTGAATTAGATAC---------GAGGACCCC-AAGGAGCTGAAGAGGTAAC---ATGGGAGGATTTTACT-G-CAGGGTGGACAGCACAGGCAAAGGCATGGAGGCATGAAACAGCATGGCGTGGAAGCAC
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58995702 147 + 153482349 caggcaacagcttcctgcaggatgtcatgcgtgaattagatac---------gaggaccccaaaggagctgaagaggtaac---atgggaggattttact-g-cagggtggacagcacaggcaacggcatggaggcatgaaacagcatggcgtggaagcac
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48088112 146 + 100215132 caggcaacagctttctgcgggatgtcatgcgtgaattagatac---------gaggacacc-aaggagctgaagaggtaac---atgggaggattttact-g-cagggtggacagcacaggcaaaggcatggaggcatgaaacagcatggcgtggaagcac
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61638942 146 + 150158102 cagggaacagcttcctgcggtatgtcatgcgtgaattagatac---------aaggacccc-aaggagctgaagaggtaac---atgggaggtttttact-g-cagggtggacagcacaggcaaaggcatggaggcatgaaagagcaaggtgtagaagcac
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58311841 146 + 146850525 CAGGGAACAGCTTCCTGCGGTATGTCATGCGTGAATTAGATAC---------AAGGACCCC-AAGGAGCTGAAGAGGTAAC---ATGGGAGGTTTTTACT-G-CAGGGTGGACAGCACAGGCAAAGGCATGGAGGCATGAAAGAGCAAGGTGTAGAAGCAC
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53237751 146 + 139301422 cagggaacagcttcctgcgggatgtcatgcgtgaattagatac---------aaggacccc-aaggagctgaagaggtaac---atgggaggtttttact-g-cagggtggacagcacaggcaaaggcatggaggcatgaaagagcatggtgtggaagcac
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234      10631 146 +    110629 caggcaacagcttcctgcaggacatggtgcatgaattagatac---------aaggacccc-aagggactacagaggtagc---atgggaggattttact-g-tggggtggacagcataggcaaagtcatggagtcatgaaagagcatggcgtggaagcac
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2749272 146 +  10880647 CAGGCAACAGCTTCTTTCAGGATGTGGTGCATGAATTAGATAC---------AAGGACCCC-AAGGGACTACAGAGGTAGC---ATGGGAGGATTTTACT-G-TGGGGTGGACAGCATAGGCAAAGGCATGGAGGTGTGGAAGAGCATGGTGTGGAAGCAC
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21551393 155 -  23169006 CCCTGGAGACCTTTCTGGAGGGCATAGTGTGTGCATTTGATGCAAGTGATATAAGGGCCTT-CAGAAGCTGAGGAGGTAAC---CTGGAAGGACATCATT-A-CAGGGGGAACAGCACAAGCTAAGGCACTTAGTCATGAAAGAACTGGGGGTGGGGGGGG
i otoGar3.GL873541         C 0 I 185
s speTri2.JH393342          4223223 103 -   9676502 CAGGG-----------GCAGGGTGCTGTGAGT--------------------CAGGGCCTC-AGCTGGCCAGAGTGGTAGC---CTGGCAGGGCCTGA-T-G-C-------------CAGCCAGTAGCCTGCGGG-----AGGGCCAGAGTGCAAGGGC--
i speTri2.JH393342         C 0 C 0
s equCab2.chr15            84380641 144 +  91571448 cagggtaggccttcctggaagacgtaatgcatggatttgatac---------aagcgcttt-g--cagctgaagaggtagt---atgcaaggacgttcttgg-caggatgaa-agcacaggcaaagttatttcggcgtgaaagagcgtgatgtgGGATTAC
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7119334 147 -  14545593 cggggtagaccttcctggaagacataatgcatgaatttgatac---------aagtgcttt-aactagctgaagagagagt---gtggaagggcttttgtgg-caggataaacagcacaggcagagttatttaggcgtgaaagagcatgatgtggaagtac
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19645310 114 -  23789964 cagg---------------------------------tgacag---------ctaggcttt-aactggctgaagggacagt---gcggaagggctttgctgg-caggatgaacagcacgggcacaggcatttaggcacgaaagagcgtggcggggaagtgt
i pteAle1.KB030580         I 43 C 0
s loxAfr3.scaffold_20      28048919 146 -  46401353 cggggaaggtcttcctggaggatgtgatgtatgaatttgatac---------aagaacatt-a----actgaagaggtagtagtatgggaggactttact-gacacagtaagcagcacagacaaagtcatataggcgtgaaagagcatcttgtggaagtac
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10397877 146 +  24341844 cagggaagatcttcctggaggatatgatgcatgaatctgatat---------aggaacatt-a----gctgaagaggtagtaggacagaaggactttact-ggcacagtaaacagcacagacaaaggcatttaggcatgaaagagcatcgtgtggaagtac
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436          1564616 120 -   2788317 CAAGGAAGACCTTCCTGGAGGACAAGATGCATGCATTTGATAC---------AAAGGCCTT-A----AC--------CAGCTGTATGGAAGGACTTTATT-G------------GCGCAGGCCAAGGCATTTAGGCATGAAAAAGTATGGGGTGT------
i dasNov3.JH567436         C 0 C 0
e orcOrc1.KB316907         11148669   0 +  17242564 C

a score=153920.000000
s hg38.chr8_KI270814v1_alt    17289  99 +    141812 ---tagcagcttaataaatagcctga---ttagagggggca---gtt----------tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg-ag-----------------agagagagagagagagagagaaa----------agaa
s panTro4.chr8             54958318  95 + 143986469 ---TAGCAGCTTAATAAATAGCCTGA---TTAGAGGGGGCA---GTT----------tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg-tg-----------------AGAGAGAGAGAGAGAGA----AA----------AGAA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58995849  87 + 153482349 ---tagcagcttaataaatagcctga---ttagagggggca---gtt------------------tgcgtgtgtgtgtgtgtgtgtgtg-ag-----------------agagagtgagagagaga----aa----------agaa
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48088258  86 + 100215132 ---tagcagcttaataagtagcctga---ttagagggggca---G--------------------TGTGTGTGTGTGTGTgagagagag-ag-----------------agagagacagagagagag---ag----------agaA
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61639088  88 + 150158102 ---tagcagcttaataaatagcctga---ttagagggggca---GTT------------------tgtgtgtgtgtgtgtgtgtgtgtg-tg-----------------tgtgagagagagagagag---ag----------agaA
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58311987 106 + 146850525 ---TAGCAGCTTAATAAATAGCCTGA---TTAGAGGGGGCA---GTTtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg-tg-----------------tgtgagagagagagagag---ag----------agaA
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53237897  98 + 139301422 ---tagcagcttaatgaatagcctga---ttagagggggca---gtt------------------tgtgtgtgtgtgtgtgtgtgtgtg-ag-----------------agagagagagagagagag---agagagagagaAAGAA
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234      10777  90 +    110629 ---tagcaGCTTAATAAATAGCCTCA---TTAGAGAG-------gtg------------tgtgtgtgtgtgtgtgtgtgtgtgtgtgtg-tg-----------------tgtgtgAGAGAGAGAGAG---AA----------AGAA
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2749418  81 +  10880647 ---TAGCAGCTT-ATAAGTGGCCTCA---TTAGAGGGGGCA---gtg------------tgtgtgtgtgtgtgtgtgtgtgtgtgtgtg-tg-----------------tgtgt------------g---tA----------AGAA
i saiBol1.JH378179         C 0 C 0
s speTri2.JH393342          4223326  72 -   9676502 ---TGGTGGTTTACTAGGCAGCC-GA---TTGTAAGAGATT---ATG---------------------GGAAGTGTGTGTGAGTGTG------------------------------AGGTAGGCAC---AG----------AGGA
i speTri2.JH393342         C 0 C 0
s equCab2.chr15            84380785  80 +  91571448 ---TACTGGCTTCACATGTAGCCTGA---TGACAGGCTGTG---ATT-------------------GCACATGTGGACGTGGGCACGTGCCG-----------------GGAGAGGGGTATCATT---------------------
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7119481  80 -  14545593 ---tactagcttaataggtagcctga---ttatagGATGTG---ATT-------------------GTACATGTATATGTGGGCACGGGCTG-----------------GGGGAGGGACATCGTT---------------------
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19645424  79 -  23789964 ---caccagcttaacacatggccggG---TTGTCGGGTGTG---ATT-------------------GGACTTGTG--TGTGGGCACGTGCTG----------------CGGGGAGGGATAGTGTC---------------------
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20      28049065  97 -  46401353 gagcaatagcttaacatgtagcacaa---atatagggagtg---aTT-------------------GTGTGTATGCGTGTGTGCGTGTG-TTTCCAGGGAAGTCTGGGTGGGAGTAGAAACAG-----------------------
i loxAfr3.scaffold_20      C 0 I 2
s triMan1.JH594629         10398023  97 +  24341844 tagtagtagcttaacatgtagcctga---atatagggagtg---att-------------------gtgtgtgtgtgtgtgtgtgtgtg-ttccctgggaagactgattgggagtagaaacaa-----------------------
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436          1564736  58 -   2788317 --------------TATGTAGCCTGAATGATATACGGTATACGTATA-------------------GTATGTGTGTTTGTGTGCACACA-TG------------------------------------------------------
i dasNov3.JH567436         C 0 C 0
e orcOrc1.KB316907         11148669   0 +  17242564 C
e otoGar3.GL873541         21551548 185 -  23169006 I

a score=7848.000000
s hg38.chr8_KI270814v1_alt    17388 2 +    141812 ca
s panTro4.chr8             54958413 2 + 143986469 CA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58995936 2 + 153482349 ca
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48088344 2 + 100215132 CA
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61639176 2 + 150158102 CA
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58312093 2 + 146850525 CA
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53237995 2 + 139301422 CA
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234      10867 2 +    110629 CA
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2749499 2 +  10880647 TA
i saiBol1.JH378179         C 0 C 0
s speTri2.JH393342          4223398 2 -   9676502 AA
i speTri2.JH393342         C 0 C 0
s triMan1.JH594629         10398120 1 +  24341844 -a
i triMan1.JH594629         C 0 I 1
s dasNov3.JH567436          1564794 2 -   2788317 CA
i dasNov3.JH567436         C 0 C 0
e equCab2.chr15            84380865 0 +  91571448 C
e loxAfr3.scaffold_20      28049162 2 -  46401353 I
e pteAle1.KB030580         19645503 0 -  23789964 C
e cerSim1.JH767782          7119561 0 -  14545593 C
e orcOrc1.KB316907         11148669 0 +  17242564 C
e otoGar3.GL873541         21551548 185 -  23169006 I

a score=80709.000000
s hg38.chr8_KI270814v1_alt    17390 33 +    141812 ggcaagcGTGTGAGCTGGTGGGGGTGGGGTGAC
s panTro4.chr8             54958415 33 + 143986469 GGCAAGCGTGTGAGCTGGTGGGGGTGGGATGAC
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58995938 33 + 153482349 ggcaagcGTGTGAGCTGGTGGGGGTGGGGTGAC
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48088346 33 + 100215132 GGAAAGCGTGTGAGCTGGTGGGGGCAGGGTGAC
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61639178 33 + 150158102 TGTACGCGTGTGAGCTGGTGGGGGCAGAGTGAC
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58312095 33 + 146850525 TGTACGCATGTGAGCTGGTGGGGGCAGAGTGAC
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53237997 33 + 139301422 TGCAAGCATGTGAGCTGGTGGGGGCAGAGTGAC
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234      10869 32 +    110629 TGCAAGCATGTTGGCTGGTGGGGAT-GGGTGAC
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2749501 32 +  10880647 TGCAAGCATGTTGGCTGGTGGGGGC-GGGTGAC
i saiBol1.JH378179         C 0 C 0
s speTri2.JH393342          4223400 20 -   9676502 GGCGAGCTTG-----GGGAGGGGAC--------
i speTri2.JH393342         C 0 I 4
s dasNov3.JH567436          1564796 32 -   2788317 TTCACGTGTGTAGG-GAGCTGGGGTGGGGTGCT
i dasNov3.JH567436         C 0 I 3
e equCab2.chr15            84380865  0 +  91571448 C
e triMan1.JH594629         10398121  1 +  24341844 I
e loxAfr3.scaffold_20      28049162  2 -  46401353 I
e pteAle1.KB030580         19645503  0 -  23789964 C
e cerSim1.JH767782          7119561  0 -  14545593 C
e orcOrc1.KB316907         11148669  0 +  17242564 C
e otoGar3.GL873541         21551548 185 -  23169006 I

a score=661185.000000
s hg38.chr8_KI270814v1_alt    17423 122 +    141812 ACATCTCAAGGCACGCTTTCCCAGTCCTTCCTTCTCCTTTGGCTGAAGTATATTGT-------------------------------TT-------------------------GGGTGATAGTTTCCCTTTCCTGTCAAATGAGAAACAAATATATCAAATATGTT-TCATGT----------GCTAA
s panTro4.chr8             54958448 121 + 143986469 ACATCTCAAGGCACGCTTTCCCAGTCCTTCCTTCTCCTTTGG-TGAAGTATATTGT-------------------------------TT-------------------------GGGTGATAGTTTCCCTTTCCTGTCAAATGAGAAACAAATATATCAAATATGTT-TCATGT----------GCTAA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58995971 122 + 153482349 ACATCTCAAGGCACGCTTTCCCAGTCCTTCCTTCTCCTTTGGCTGAAGTATATTGT-------------------------------TT-------------------------GGGTGATAGTTTCCCTGTCCTGTCAAATGAGAAACAAATGCATCAAATATGTT-TCATGT----------ACTAA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48088379 122 + 100215132 ACATCTCAAGGTACGCTTTCCCAGTCCTTCCTTCTCCTTTGGCTGAAGTATATTGT-------------------------------TT-------------------------GGGTGATAGTTTCCCTATCCTGTCAAATGAGAAACAAATGGATCAAATATGTT-TCATGT----------ACTAA
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61639211 122 + 150158102 ACATCTCAAGGCACGCTTTCCCAGCCCTTCCTTCTCCTTTGGCTGAAGTGTATTGT-------------------------------TT-------------------------GGGTGATAGTTCCCCTGTGCTGTCAAATGAGAAACAAATGCATCAAATATGTT-TCATGT----------ACTAA
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58312128 122 + 146850525 ACATCTCAAGGCACGCTTTCCCAGCCCTTCCTTCTCCTTTGGCTGAAGTGTATTGT-------------------------------TT-------------------------GGGTGATAGTTCCCCTGTGCTGTCAAATGAGAAACAAATGCATCAAATATGTT-TCATGT----------ACTAA
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53238030 122 + 139301422 ACATCTCAAGGCACGCTTTCCCAGCCCTTCCTTCTCCTTTGGCTGAAGTATATTGT-------------------------------TC-------------------------GGGTGATAGTTCCCCTGTGCTGTCAAATGAGAAACAAATGCATCAAATATGTT-TCATGT----------ACTAA
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234      10901 175 +    110629 ACATCTCAAGGCATGCTTTCCCAGCCCTTCCTTCTCCATTGGCTGAAGTAGATTGTGTTTTTCACCCTGTTCCCTCTGCCTAGAGTGTT---CTTTCTTCTCCTATTTCTATGCAGGTGACAGTTACCCTGTCTTGTCAAATGAGAAACAAATACATCAAATGCATT-TCATGT----------TCTAA
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2749533 178 +  10880647 ACATCTCAAGGCATGCTTTCCCAGCTCTTCCTTCTCCATTGGCTGAAGTAGATTGTGTTTTTCACCCTGTTCCCTCTGCCTAGAGTGTTCTCCTTTCTTCTGCCATTTCTATACAGGTGGCAGTTCCCCTGTCTTGTCAGATGAGAAACAAATACATCAAATGCGTT-TCATGT----------TCTAA
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21551733 113 -  23169006 ACATTGCAGGGTGCA-TTTGCCAGCCCTTCTTCTTCCTTTGACAGAAGTGTATTTT-------------------------------TT-------------------------GTATAATAGTTGCTC-----TGTCAGATGAGAAACAGATACATCAAATCTGTT-TCATGT----------AT---
i otoGar3.GL873541         I 185 C 0
s speTri2.JH393342          4223424 115 -   9676502 TCACCTCAGATCACAC-TTGTGAGTGCCTCCCTCT-CTTGGGCTGAAGAGCA-----------------------------------TT-------------------------GTGTAATGGTT-CCCTGTGCTGTCAAGGGAGAAGCAGATGCATCACATTCCTCATCACGC----------A-TGA
i speTri2.JH393342         I 4 C 0
s equCab2.chr15            84380865 122 +  91571448 GCATCCACAGGAACATTGTGCGAGGCCTTTTATCTCCTTTGTTTGGAATGTATTAT-------------------------------TT-------------------------GTGTAATGGTTGCCCTGTCCTGTCAAATGAGAAACAAAGAAATCAAATGTGTT-TCACGT----------ACTGA
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7119561 132 -  14545593 ACATCCACAGGAACATTTTGTGAGGCCTTTTATCTCCTTTGGCTGGAATGTATTAT-------------------------------TT-------------------------GTGTAATGGTTCCCTTGTCCTGTCAAATGAGAAACAAATAAATCAAATGTGTT-TCATGTTGTAGATGGGGCTAA
i cerSim1.JH767782         C 0 I 147
s pteAle1.KB030580         19645503 122 -  23789964 ACACCCACAGGGACACTTCGTGAGGCCTCCCATCTCCCCTGGCTGGAGTATATTAT-------------------------------TT-------------------------GTGTAGTAGTTGCCTTGTCCTATCAGATGAGAAACAGATTAATCAAATGTGAT-TTGTAT----------ACTGA
i pteAle1.KB030580         C 0 C 0
s dasNov3.JH567436          1564831 119 -   2788317 ATATCTACAGGAACATTTTGTGAGCCCTTTCTTCT---TTGGCTGGAATATATTAT-------------------------------TT-------------------------GTGTAATAGTTCTCCTGTCCTGTCAAATGAGAGACAGATGAATGAAAGGTGTT-TTATGT----------ACTGA
i dasNov3.JH567436         I 3 C 0
e triMan1.JH594629         10398121   1 +  24341844 I
e loxAfr3.scaffold_20      28049162   2 -  46401353 I
e orcOrc1.KB316907         11148669   0 +  17242564 C

a score=2576324.000000
s hg38.chr8_KI270814v1_alt    17545 588 +    141812 G---------------------------GGATATCGACAT----A-----------------GGGCTAAATT----CTTCTTT-TATCTGACTGTTATTTAG-TATATATGTCTTAAAAATGGACACAGGTGTGCCTTGCCTAT--A-AAA--AAAGTATGGTCTGGCTTTGGGAACAATT-CCTGCATGCATCTTGATGTGTGCCACAAC---CAGCAACATTTAAATAAGGCTCCATGGGTAGGTATAATCTGTGTGCATGGAC-TTTGCTCACATAGAA---ATTCAGCTCACTGGT----------------ACatcgttgtttgacattatcttgc-----ttactttttagtctgtc-cttccc-atgcactgtgagtgctgtgggagggatggtcctgcttgtcttaggtactgctccatcccaagggcctcacagagtgcctggtatatggtagcttctcactgaatacttgt--aaagaatgagtTTATGA--GACAGCCTGTTTTTGTTTACcctctaccaccccc--tttgc-cttgttctccatg----------a-------------------------------------------------------------ctgttctttcttcctct-ctggaaaatattgtctct-ttttt-tcc---acaggcgttttt------catcctgttctctctgcctagagt-ttctcctgtcttct-ccatcccctctctcttcctgatctttcagatttc
s panTro4.chr8             54958569 588 + 143986469 G---------------------------GGATATCGACAT----A-----------------GGGCTAAATT----CTTCTTT-TATCTGACTGTTATTTAG-TATATATGTCTTAAAAATGGACACAGGTGTGCCTTGCCTAT--A-AAA--AAAGTATGGTCTGGCTTTGGGAACAATT-CCTGCATGCATCTTGATGTGTGCCACAAC---CAGCAACATTTAAATAAGGCTCCATGGGTAGGTATAATCTGTGTGCATGGAC-TTTGCTCACATAGAA---ATTCAGCTCACTGGT----------------ACatcgttgtttgacattatcttgc-----ttactttttagtctgtc-ctttcc-atgcactgtgagtgctgtgggagggatggtcctgcttgtcttaggtactgctccatcccaagggcctcacagagtgcctggtatatggtagcttctcactgaatacttgt--aaagaatgagtTTATGA--GACAGCCTGTTTTTGTTTACcctctaccaccccc--tttgc-cttgttctccatg----------a-------------------------------------------------------------ctgttctttcttcctct-ctggaaaatattgtctct-ttttc-tcc---acaggcgttttt------catcctgttccctctgcctagagt-ttctcctgtcttct-ccatcccctctctcttcctgatctttcagatttc
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58996093 594 + 153482349 G---------------------------GGATATTGACAT----A-----------------GGGCTAAATT----CTTCTTT-TATCTGGCTGTTATTTAG-TATGTACGTCTTAAAAATGGACACAGGTGTGCCTTGCCTATAAA-AAA--AAAGTGTGATCTGGCTTTGGGAACAATT-CCTGCATGCATCTTGATGTGTGCCACAAC---CAGCAACATTTAAATAAGGCACCATGGGTAGGTATAATCTGTGTGCATGGAC-TTTGCTCACATAGAA---ATTCAGCTCACTGGT----------------Atgtcattgtttgacattatcttgct-tgtttactttttagtctgtc-cttccc-atgcactgtgagtgctgtgggagggatggtcctgtctgtcttaggtactgccccatcccaagggcctcacagagtgcctggcatatggtagcttctctcagaatacttgt--aaagaatgagtTTATGA--GACAGCCTGTTTTTGTTTACcctctaccaccccc--tttgc-cttgttctccatg----------a-------------------------------------------------------------ctgttctttctttctct-ctggaaaatgttgtctct-ttttt-tcc---acaggcgttttt------caccctgttccctctgcctagagt-ttctcctgtcttct-ccatcccctctctcttcctgatctttcagatttc
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48088501 590 + 100215132 G---------------------------GGATATTGACAT----A-----------------GGGCTAAA-------TTCTTT-TATCTGGCTGTTATTTAG-TATATACGTCTTAAAAATGGACACAGGTGTGCCTTGCCTAT--A-AAA--AAAGTATGATCTGACTTTGGGAACAATT-CCGGCATGCATCTTGATGTGTGCTACAAC---CAGCAACATTTAAATAAGGCTCCATGGGTAGGTATAATCTGTGTGCATGGAC-TTTGCTCACACAGAA---ATTCAGCTCACTGGT----------------ACatcgttgtttgacattatcttgct-tgtttactttttagtctgtc-cttccc-acgcactgtgagtgctgtgggagggatggtcctgcctgtcttaggtactgctccatcccaagggcctcacagagtgtccggcatatggtagcttctcactgaatacacgt--aaagaatgagtTTATGA--GACAGCCTGTTTTTGTTTAtcctctaccaccccg--tttgc-cttgttctccatg----------a-------------------------------------------------------------ctgttctttcttcctct-ctggaaaatattgtctct-ttttt-tcc---acaggcgttttt------caccctgttccctctgcctagagtgttctcctgtcttct-ccatcccctctctcttcctgatctttcagatttc
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61639333 608 + 150158102 G---------------------------GGATATTGACAT----A-----------------GGGCTAAATT----CTTTTTT-TATCTGGCTATTATTTAG-TATATATGTCTTAAAAATGGGCACAGGTGTGCCTTGCCTAT--A-AAA--AATGTATGATCTGGCTTTGGGAACAATT-CCTGCATGCATCTTGATGTGTGCCACAGC---CAGCAACATTTAAATAAGGCTCCATGGGTAGGTATAATCTGTGTGCGTGGAC-TTCGCTCACATAGAA---ATTCAGCTCACTGATGGCAGTCAC-ATgcacacattgttgtttgacattatcttgct-tgtttactttttggtctgtc-cttccc-atgtactgtgagtgctgtgggagggatggtcctgcctgtcttaggtactgctccatcccaagggcctcacagagtgcctggcacatggtagcttctcactgaatacttgt--gaagaatgagtTTATGA--GACAGGCTGTTTTTGTTTACcctctaccaccccc--tttgc-cttgttctccatg----------a-------------------------------------------------------------ctgttctttcctcctct-ctggaaaatactgtctct-tcttt-tcc---acaggtgttttt------caccctgttccctctgcctagagtgttctcctttcttct-ccatccccgctgtcttcctgatctttcagatttc
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58312250 608 + 146850525 G---------------------------GGATATTGACAT----A-----------------GGGCTAAATT----CTTTTTT-TATCTGGCTATTATTTAG-TATATATGTCTTAAAAATGGGCACAGGTGTGCCTTGCCTAT--A-AAA--AATGTATGATCTGGCTTTGGGAACAATT-CCTGCATGCATCTTGATGTGTGCCACAGC---CAGCAACATTTAAATAAGGCTCCATGGGTAGGTATAATCTGTGTGCATGGAC-TTCGCTCACATAGAA---ATTCAGCTCACTGATGGCAGTCAC-ATgcacacattgttgtttgacattatcttgct-tgtttactttttggtctgtc-cttccc-atgcactgtgagtgctgtgggagggatggtcctgcctgtcttaggtactgctccatcccaagggcctcacagagtgcctggcacatggtagcttctcactgaatacttgt--gaagaatgagtTTATGA--GACAGGCTGTTTTTGTttaccctctaccaccccc--tttgc-cttgttctccatg----------a-------------------------------------------------------------ctgttctttcctcctct-ctggaaaatactgtctct-tcttt-tcc---acaggtgttttt------caccctgttccctctgcctagagtgttctcctttcttct-ccatccccgctgtcttcctgatctttcagatttc
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53238152 608 + 139301422 G---------------------------GGATATTGACAT----A-----------------GGGCTAAATT----CTTTTTT-TATCTGGCTATTATTTAG-TATATATGTCTTAAAAATGGGCACAGGTGTGCCTTGCCTAT--A-AAA--AATGTATGATCTGCCTTTGGGAATGATT-CCTGCATGCATCTTGATGTGTGCCACAGC---CAGCAACATTTAAATAAGGCTCCATGGGTAGATATAATCTGTGTGCATGGAC-TTCGCTCACATAGAA---ATTCAGCTCACTGGTGGCAGTCAC-ATgcacacatcgttgtttgacattatcttgct-tgtttactttttggtctgtc-cttccc-atgcactgtgagtgctgtgggagggatggtcctgcctgtcttgggtactgctccatcccaagggtctcacagagtgcctggcacatggtagcttctcactgaatacttgt--gaagaatgagtTTATGA--GACAGGCTGTTTTTGTTTACcctctaccacccgc--tttgc-cttgttctccata----------a-------------------------------------------------------------ctgttctttcttcccct-ctggaaaatattgtctct-tcttt-tcc---acaggtgttttt------caccctgttccctctgcctacagtgttctcctttcttct-ccatccctgctgtcttcccgatctttcagatttc
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234      11076 595 +    110629 G---------------------------GAATATAGACATAGACA-----------------GGGCTAAATT----CTTCTTT-TATT---------------TATATGCATCTTAAAAATGGACACGCATGTGCCTTGCCTGT--A-AAA--AATGTATGAT----CTTTGGGAACAATT-CCTGCATGCATCTTGATGTGTGTCACAAC---CAGCAACATTTAAATAAGACTGCATGGGGAGGTATAATCTGTGTGCATGGAC-TTTGCTCACATAGAA---ATTCAGCTCACTGGTGGCAGTCAC-ATgcacgcatcattgtttgacattatcttgct-tggctgctttttaatctgtc-cttcct-gtgcgctgtgagtgctgtggga-agatggtcctgcctgtcttatgtactgctccatcccaagggcctcacagagtgcctggcatatggtagcttctcagtgaatacttgg--aaaggatgagtTTATGG--TAcagcctgtttttgtttaccctctaccacctgc--tttgc-cctattcaccata----------a-------------------------------------------------------------ctgtgctttcttcctcc-ctggaaaatactgtctct-tttttcccc---agaggtgttttt------caccctgttccccctgcctagagtgttctcctttcttcttctatcccatctctcttcctgatctttcagatttc
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2749711 615 +  10880647 G---------------------------GAATATAGACATAGACA-----------------GGGCTAAATT----CTTCTTT-TATCTGGCATTTATTTTAGTATATACATCTTAAAAATGGACACACATGTGCCTTGCCTAT--A-AAA--AATGTATGATCTAGCTTTGGGAACAATT-CCTGCATGCATCTTGATATGTGTCACAAC---CAGCAACATTTAAATAAGACTGCATGGGTAGGTATAATCTGTGTGCATGGAC-TTTGCTCACATAGAA---ATTCAGCTCACCGGTGGCAGTCAC-ATgcacacatcattgtttgacattatcttgct-tgggtgctttttaatctgtc-ctttct-gtgcactgtgagtgctgcggga-ggatggtcctgcctgtcttatgtactgctccatcccaagggcctcacagagtgcctggcatatggtagcttctcagtgaatacttgt--aaaggatgagtTTACGA--TACAGCCTGTTTTTGTTTACCTTCTACCACCTGCTTTTTGC-CCTGTTCACTATG----------A-------------------------------------------------------------CTGCGCTTTCTTCCTCC-CTGGAAAATATTGTCTCT-TTTTT-CCC---AGATGTATTTTT------CACCctgttccccctgcctagagtgctctcctttattctcccatcccgtctctcttcctgatctttcagatttc
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21551846 625 -  23169006 ------------------------------------AGAT----A-----------------GAACTAAATT----CTT---------TACCATTTATCTAG-TAGGGACAATTTTTAAA----CACAG--GTGCCTTGTTTAT--A-AAAACAATGAATGATCTGATTAT-TAAACAATC-CCTGTATGTGTCTTCATGAATGCCACAACTTTTAGCAACATTTAAACGAGGCTGTGATGGTAGGCGTAGTCTGTGTGCGTGGGC-TTCCCTGAAACAGAA---ATTGAGCTAAGGGGT------GAC-TTCTacatatcaccatttgaaattaccttgct-tggttaccactttgtccagc-ttg--------agtgtaagtgcttttggcgcacggatcctgtctatcttacatac-actgtatactgagagccttgccaagtgcctgagtcatggtatcttactaataaatacttgtcaaaagagtgaGCTTAGGA--CACAACCTGTttttcttt--------------tc--ttttc-tttttttttTATT----------AAATCGTAGCTGTGTACATTAATGCAATCATGGGGTACAATGTGCTAGTTTTAGATACAATTCTGTTTTTCTTTACCTT-CTCCTTAGCCCCTTGCCT-GGTTT-TCCATAACAAGCTTCCTTCAGAGGCATTCTATCCCTTTCTTTCA-------TTCCTTCCTTTTTTTATCTTGACTTTCAT--TGATCTTTTAGATTTC
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4223539 564 -   9676502 G---------------------------GAATGTAGACAG------------------------GCTGA-------CTTCCTT-TGTCTGGCATTTGTTTAG-TGTATATGATTTAAAAACAGACACATG---GCCTTTCTTAT----AGA--AATATACGGTCTGGTAACGGACACACTC-CCCACGTGTCTATTAACGTATAGCCCAGC---TAGCAGCATTGAA---AGGCCTGGT-AGTAGGTGTGCTgtgcgtgcgtgcg----tgcgtgcgtAGAGCTCCTCCAGCTGAGTGCTGGC--TCAT-GGTCACACACTCCTGATTGAAGTTAGTGTGTA-TG-TCACT-CTTGGTCTGCC-CTCCCC-TGTGGATGTGGGTGAGTTGGG--GCATGAACC--CTTCACTCATACGCTGTTCCACCCCCAGGGCCTAGCAGCGTGCTTGGTACCTGGGGGACTCTCCGTGAGTCA------GAAGAATGCGTCCAGGC--TGGAGCGTGCTTTC-CCTGTCCTTGGCTGGCCAC--TTGGC-CTTGTTCTCTAGG----------G--------------------------------------------------------------TGAGCTGTCTTC-----CTGGGAAAT----TCTGT-TTTCT-TCC---GCAGGAGCTTTT------CACTGTGTTC----TGTCTGGAGAGCCCTTCCTCCTCCC-----ACCTTCTCTCTCACTGATCTTTGAGATTTT
i speTri2.JH393342         C 0 C 0
s equCab2.chr15            84380987 593 +  91571448 ----------------------------GAATGTAGGC------A-----------------GGGCTAAATTCTTACTTTTTTAAATCTGGTATTTCTCTAA-CATATGCTATTTAAAAACAGACACGCACGTGCCTTGCTTAT--AGAAA--AATGTGTG-----------GGAACAATC-CTGATGTGTATCTTGATGTGTACCACAAC---CAGCAACATTTAAATAAGACTGCGGTGGTAGGTGTCATCTGTGTGCATGGAA-TTCCCTCCCGT-GAA---GTTCAGATCAGTGGCTGCAGTCATGGTgcacctatcactatttgaaattatcttgt-----ttatttcttggtctgtctccacct-ctagaatacaagtgtcgttggaacgtggaccctgtctgtcttaaatgctgatctgtcccaagggcctggcaaagtgtctggcatgtggcaggttctcagtaaatatttgttgaaagagtgGGTTTAGGA--TATAGCTTGTTTTTCTTCATCCCCAGCCAACCCT--TTTGC-CATGTTCTCCGTG----------A-------------------------------------------------------------ATGTTTTCTTCTC-----TTGTAAGATATTATAtc--tttct-tc-----ctagctttgtc------cactctgttccctctgtctggaatattttccttccttctcctgtcgtctctctcctactgattttccagatttc
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7119840 643 -  14545593 GGGATCCGAACCCGGGCCGCCAGCAGCAGAGCGCGCGC------ACTTAACTGCTAAGCCACGGGGCCAGCCCCCGCTTTTTTAAATCTGATATTTCTCTAA-CATATACTATTTGAAAACAGACATAAACGTGCCTTACTTAC--AGAAA--AATGTATG-----------GGAACAATC-CCGATGTGTATCTTGATGTGTGCCACAAC---TAGCAACATTTAAATAAGACTGCAGTAGTAGGTATAATCTGTGTATGTGGAG-TTCCCTTACTTAGAA---GTTCAGATAAGTGGCTGCAGTCATGGTgcacatagcaccatttgaaactatcttgt-----ttatttcttggtctgtctctactt-ctagaataccagtgtcattggaatatggaccctggctgtctttaatgctgatctatcccaagggcctagcaaagtgtctagcacatggcaggttctcagtaaatatttgctgaaagaatgaatTTAGGA--TAAAGCTTGTTTTTcttcatccccaaccaaccct--tttgc-cttgttctccatg----------a-------------------------------------------------------------atattttcttctc-----ttgggagatattatatccgtttct-gct---acaggctttgtt------cactctgttccctctttctggagtattctccttccttctcctgtcctatctcttctactgattttccagatttc
i cerSim1.JH767782         I 147 C 0
s pteAle1.KB030580         19645625 529 -  23789964 ----------------------------GGGTATAGAT------A-----------------GGACTGAATTTTTACTGTTTT-AATCTAGTATTTCTCTAG-CATATTCCATTAAAAAATGGGCACACACGTGCCTTGCTTAC--AGAAA--AACGTATG-----------AGAATAATT-CCGACATGTATCTAGATGTGTGCCCCAAC---TAGCCACGCGCGGATGAGTGCGCAGTG---AGTGCTGTCTGTGCACGCGG---TCCCCTCACAC-GGA---CGTCAGCTGAGCGGCTGCGGTCCAGATGCACGCACC------------------------------------tctgtctctccct-ctcg------------gttggaacctggaccctgtctgtcttttatactgatctgtcccaaggtcctagcagactgcccggcatgtggcaggtcctcagcaaatatttgctgtcagaatgagtCCAAGA--CGCAGCCTGTTCT------TCCCCTGCCACCCTC--CGAGAGCACGTTCTCCATC----------A-------------------------------------------------------------ACATTTTCCTGTC-----CTGGAAACTGCAGTCTC--TCTCC-TCC---AC-GGCCTCGTC------CACTCTGTCCCCTCTGCCTGGAGGACCGTCCCTCCTTGTCC---CTTCTCTCTTC--------CTTCAGGTTCC
i pteAle1.KB030580         C 0 C 0
s dasNov3.JH567436          1564950 585 -   2788317 -----------------------------GGCATGTAAGT----A-----------------AGGCTAAATTCTTAATTCTTT-CATCTAGCATTTATCTAG-CATATATATTTTAGAAACAGACA----TGCTCCTTGCTTAC--AGAAA--AATTGATGACCTCG-TCTGGGAGCAATTCCCCATATCAATCTTGATATATGCCACCGC---TAGAAATGAATGAATGAG---------------------TGAGTGAATGCGTGTTCTCTAATACAGAA---ATTCAGCTAAGTGGATGCAGTCATTATgcacataccacta-ttgaaatcaatctgttatgtttacttcctggtctgtt-ctcccctctagaatgtacatgccattaaaatatgggtcctgtctattttaaatatagctgtatcccaagtacctagcagagtgcctggcacatcgtaggttctcagtaacagtttgttgaaaggatgaCATGGGAAATAATAGCCTAGTTTTccttatcgcctaacaacttc--tttac-cttgttttccatacttcagcaaca-------------------------------------------------------------ctgagcttcgttcctttcctggaaaatg---------tttct-tcc---aca----ttgct------cactctatctcc--tgtctggagtattcttccttttccc-----attctatctcctattga-ctttcagatttc
i dasNov3.JH567436         C 0 C 0
e triMan1.JH594629         10398121   1 +  24341844 I
e loxAfr3.scaffold_20      28049162   2 -  46401353 I
e orcOrc1.KB316907         11148669   0 +  17242564 C

a score=569474.000000
s hg38.chr8_KI270814v1_alt    18133 118 +    141812 acattaagtattacacccttagtgaatcttgccttgatctctcaagctaggacagatga-t---ttacacacactctcacggaattgttttcctttccttctgt--------gaatttatctcagttttt
s panTro4.chr8             54959157 118 + 143986469 accttaagtattacacccttagtgaatcttgccttgatctctcaagctaggacagatga-t---ttacacacactctcatggaattgttttcctttccttctgt--------gaatttatctcagttttt
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58996687 118 + 153482349 accttaagtattacatccttagcgaatcttgccttgatctctcaagctaggacagatga-t---ttacacacactctcatggaattgttttcctttccttctgt--------gaatttatctcagttttt
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48089091 118 + 100215132 accttaagtattacatccttagcgaatcttgccttgatctcttaagctaggacagatga-t---ttacacacactctcatggaattgttttcctttccttctgt--------gaatttatctcagttttt
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61639941 126 + 150158102 accttaagtattacatccttagcgaatcttgcctggatctctcaagctaggacaaatga-t---ttacatacactctcatggaattgttttcctttccttcagtttttaaaggaatttatctcagttttt
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58312858 126 + 146850525 accttaagtattacatccttaacgaatcttgcctggatctctcaagctaggacaaatgA-T---TTACATACACTCTCATGGAATTGTTTTCCTTTCCTTCAGTTTTTAAAGGAATTTATCTCAGTTTTT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53238760 118 + 139301422 accttaaggactacatccttagtgaatcttgctttgatctctcaagctaggacaaatga-t---ttacacacactctcatgaaattgttttcctttccttctgt--------gaatttatctcagttttt
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234      11671 118 +    110629 acctgaaatattacatccgtagcaaatcttgcctagatctctcaatctaggacagatga-t---ttacacatcctctcatggaactgttttcctttccttctgt--------gagtttatcccagttttt
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2750326 111 +  10880647 acctgaaatattacatc-------agtctggcctagatctctcaatctagAACAGACGA-T---TTACACATCCTCTCATGGAATTGTTTTCCTTTCCTTCTGC--------GAATTTATCTCAGTTTTT
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21552471 120 -  23169006 GCTTTAAGTATTGTATTCTTAGAGAATCTTGCCTAGAAGTCTCAGTCTAGGAGACATGC-TTTGTTACACACTCTTTCATAAAATTGTATCATTTTCCTTCTGA--------GAGTTTATCTT-GATTTT
i otoGar3.GL873541         C 0 C 0
s equCab2.chr15            84381580 114 +  91571448 -actttaacattatatccttggagaatagtgcctagactccttaatctagGACAGA----T---TGATACACACCCTCATGCAATTGTATTCCTTTTCTTCTGA--------GAATCTGTCTCAGTTTTT
i equCab2.chr15            C 0 I 271
s cerSim1.JH767782          7120483 114 -  14545593 -actttaactttatatccttagagagtattacctagatgccttaacctagggcaga----t---tgttacacactctcatggaattgtattcctctcctcctga--------gaatttatctcaattttt
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19646154 113 -  23789964 --CTTTACTGTTATGCCCATAGAG--TCTTGTCCAGATGCCCTAACCGAGGACAGATTATT---TGTCAC-CACTCTCATGGAATTGTGTTCCT-TTCTTCTGC--------AAATTTATCCCGATTCTT
i pteAle1.KB030580         C 0 I 1
s dasNov3.JH567436          1565535 101 -   2788317 acccta--tttgatttccttggggaatccttcctaaatgcctcaatctagaacagatta-t---ttgttaa----------aaattgtgttccttt-----tga--------gactttatctcaaatttt
i dasNov3.JH567436         C 0 C 0
e speTri2.JH393342          4224103   0 -   9676502 C
e triMan1.JH594629         10398121   1 +  24341844 I
e loxAfr3.scaffold_20      28049162   2 -  46401353 I
e orcOrc1.KB316907         11148669   0 +  17242564 C

a score=39093.000000
s hg38.chr8_KI270814v1_alt    18251 8 +    141812 aatgataa---
s panTro4.chr8             54959275 8 + 143986469 aatgataa---
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58996805 8 + 153482349 aatgataa---
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48089209 8 + 100215132 aatgataa---
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61640067 8 + 150158102 aatgataa---
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58312984 8 + 146850525 AATGATAA---
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53238878 8 + 139301422 aatgataa---
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234      11789 8 +    110629 aatgataa---
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2750437 8 +  10880647 AATGATAA---
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21552591 8 -  23169006 AGTAACAA---
i otoGar3.GL873541         C 0 C 0
s equCab2.chr15            84381965 8 +  91571448 AATTATGA---
i equCab2.chr15            I 271 C 0
s cerSim1.JH767782          7120597 8 -  14545593 aattatga---
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19646268 8 -  23789964 AATTATAA---
i pteAle1.KB030580         I 1 C 0
s dasNov3.JH567436          1565636 6 -   2788317 -----taatct
i dasNov3.JH567436         C 0 C 0
e speTri2.JH393342          4224103 0 -   9676502 C
e triMan1.JH594629         10398121 1 +  24341844 I
e loxAfr3.scaffold_20      28049162 2 -  46401353 I
e orcOrc1.KB316907         11148669 0 +  17242564 C

a score=151800.000000
s hg38.chr8_KI270814v1_alt    18259 32 +    141812 atgtttgagagagttacttgagtaa---------tgtgttc
s panTro4.chr8             54959283 32 + 143986469 atgtttgagagagttacttgagtaa---------tgtgttc
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58996813 32 + 153482349 atgtttgagagagttacttgagtaa---------tgtgttc
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48089217 32 + 100215132 atgtttgagagagttacttgagtaa---------tgtgttc
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61640075 32 + 150158102 atgtttgagagagttacttgagtaa---------tgtgttc
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58312992 32 + 146850525 ATGTTTGAGAGAGTTACTTGAGTAA---------TGTGTTC
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53238886 28 + 139301422 atgttt----gagttacttgagtaa---------tgtgttc
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234      11797 28 +    110629 atattt----gagtaacttgagtaa---------tgtgttc
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2750445 28 +  10880647 ATGTTT----GAGTTACTTGAGTAA---------TGTGTTC
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21552599 37 -  23169006 ATTTAT----TAGTTACTTGGGCAACTAATGTGTTTTGTTT
i otoGar3.GL873541         C 0 C 0
s orcOrc1.KB316907         11148669 26 +  17242564 ATGCTTAGGGGAGT------AATAA---------TGTCTTT
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84381973 32 +  91571448 ATGTATTAGAGAGTTATTTAAGTAA---------TGAATTT
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7120605 32 -  14545593 gtgtattagagagttatttgagtaa---------tgtattt
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19646276 28 -  23789964 ATATTTCGAAGAG----CCGAGTAG---------CGTGTTT
i pteAle1.KB030580         C 0 C 0
s dasNov3.JH567436          1565642 30 -   2788317 --atattagagagttatttgtgtaa---------agtattt
i dasNov3.JH567436         C 0 C 0
e speTri2.JH393342          4224103  0 -   9676502 C
e triMan1.JH594629         10398121  1 +  24341844 I
e loxAfr3.scaffold_20      28049162  2 -  46401353 I

a score=180153.000000
s hg38.chr8_KI270814v1_alt    18291 25 +    141812 tgccccca-ttgactgcaacttcta---------------t
s panTro4.chr8             54959315 25 + 143986469 tgccccca-ttgactgcaacttcta---------------t
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58996845 25 + 153482349 tgccccca-ttgattgcaaattctg---------------t
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48089249 25 + 100215132 tgccccca-ttggctgcaaattctg---------------t
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61640107 25 + 150158102 tgccacca-ttgactgcaaattcta---------------t
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58313024 25 + 146850525 TGCCACCA-TTGACTGCAAATTCTA---------------T
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53238914 25 + 139301422 tgccacca-ttgactgcaaattcta---------------t
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234      11825 25 +    110629 tgccctca-ttgactgcaaattcta---------------t
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2750473 25 +  10880647 TGCCCTCA-TTGACTGCAAATTCTA---------------T
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21552636 40 -  23169006 TGCCCTTA-CAGACTGCGAATTCCATGACAGCAGTTATGCT
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4224103 25 -   9676502 TGCCCTCA-TAGACTACAAGTTCTG---------------T
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907         11148695 25 +  17242564 TGCCTTCA-TATGCCACAAATTCAG---------------T
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84382005 25 +  91571448 TGccctca-tagactgcaaattctg---------------t
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7120637 25 -  14545593 tgccctca-tagactgcagattctg---------------t
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19646304 25 -  23789964 TGCCTTTG-CAGACTGCAGATTCTG---------------T
i pteAle1.KB030580         C 0 C 0
s dasNov3.JH567436          1565672 26 -   2788317 tacccttagttgactgcagattctg---------------t
i dasNov3.JH567436         C 0 I 201
e triMan1.JH594629         10398121  1 +  24341844 I
e loxAfr3.scaffold_20      28049162  2 -  46401353 I

a score=239236.000000
s hg38.chr8_KI270814v1_alt    18316 52 +    141812 g-------------------------------------caccta-ttt-tatttt-ctgaatatagt-cagta-ctaagagattg-tatgttctc
s panTro4.chr8             54959340 52 + 143986469 g-------------------------------------cgccta-ttt-tatttt-ctgaatatagt-cagta-ctaagagattg-tatgttctc
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58996870 53 + 153482349 g-------------------------------------tgccta-ttt-tattttcctgaatatagt-cagta-ctaagagattg-tatgttctc
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48089274 52 + 100215132 g-------------------------------------tgccta-ttt-tatttt-ctgaatatagt-cagta-ctaagagattg-tatgttctc
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61640132 52 + 150158102 g-------------------------------------tgccta-ttt-tatttt-ctgaatatagt-cagta-ctaacagattg-tatgttctc
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58313049 52 + 146850525 G-------------------------------------TGCCTA-TTT-TATTTT-CTGAATATAGT-CAGTA-CTAACAGATTG-TATGTTCTC
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53238939 52 + 139301422 g-------------------------------------tgccta-ttt-tatttt-ctgaatatagt-cagta-ctaagagattg-tatgttctc
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234      11850 52 +    110629 g-------------------------------------tgcctg-ttt-tatttt-ctgaatatagt-catta-gtaagagactg-taagttctc
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2750498 52 +  10880647 G-------------------------------------TGCCTG-TTT-TATTTT-CTGAATATAGT-CGTTA-GGAAGAGACTG-TAAGTTCTC
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21552676 54 -  23169006 G-------------------------------------TACCTT-TTT-AATTTT-TTGAATGTAGTATAGCA-CTGAGGTAATGACATGttctt
i otoGar3.GL873541         C 0 I 281
s speTri2.JH393342          4224128 59 -   9676502 GACGTC--------------------------------GTCTTG-TTT-TGTTTT-CCGGGTGTGGTGCAGTACCTAGGAGATTG-TATGTTCTC
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907         11148720 69 +  17242564 GACGGCA----------------------GTCATGTCTTACCGG-TTT-GGTTTT-CTGAATGTAGTACACCACCTTGGAGGTTG-TATGCTCCC
i orcOrc1.KB316907         C 0 I 4
s equCab2.chr15            84382030 63 +  91571448 ga-----------------------------cacatcatgcctg-tttctgtttt-ctgagtgtagtatggtccctaggagattg-tatggtctc
i equCab2.chr15            C 0 I 4
s cerSim1.JH767782          7120662 70 -  14545593 gacagca----------------------gtcatgtcatgcctg-tttttgtttt-ctgaatgtagtatgatgcctaggagattg-tatgttctc
i cerSim1.JH767782         C 0 I 4
s pteAle1.KB030580         19646329 66 -  23789964 GTTGGCA----------------------GACATGTCGTGCCTG-TCT-TGTTTT-CTGAAT---GTGCAGAACCTCGGAGATTG-TGCGTCCTC
i pteAle1.KB030580         C 0 I 4
s dasNov3.JH567436          1565899 88 -   2788317 ----gcacccaaccacttgagctacatctattaccccgtacctgattt-tgtttt-ctgtatgtagtatggaatctaggagatag-tatgttcac
i dasNov3.JH567436         I 201 C 0
e triMan1.JH594629         10398121  1 +  24341844 I
e loxAfr3.scaffold_20      28049162  2 -  46401353 I

a score=1088965.000000
s hg38.chr8_KI270814v1_alt    18368 291 +    141812 ----agtgtttaccg---------gtggatgaat--------gagtGA----------------TGATGTG-CTTCTACATGAGAACA--------------CACCCTGTCCAAGGAGGCTCCTAGAGCTCTTGCCTCCCAGCTATAGCCT-CTGTCTCCCTTAGAA-TGCTGGGTGCACCTCAGGGCCTGCCCCAT-----GGGGA--TCTTGTGAACAGCCAC-TGTAGCACTATAAATTCTCTCTT--GTTTCTT-TTCTATGCCCC-GGAACAA------TGTCTCCTCTCTGATT-----------CTTGTACCTGGAATATCTGTTGCTGGTCTATACTTCACTCTCTGTTCCTA---G--------------AGAAG-----------------AAGCATA--
s panTro4.chr8             54959392 291 + 143986469 ----agtgtttactg---------gtggatgaat--------gagtGA----------------TGATGTG-CTTCTGCATGAGAACA--------------CACCCTGTCCAAGGAGCCTCCTAGAGCTCTTGCCTCCCAGCTATAGCCT-CTGTCTCCCTTAGAA-CGCTGGGTGCACCTCAGGGCCTGCCCCAT-----GGGGA--TCTTGTGAACAGCCAC-CGTAGCACTATAAATTCTCTCTT--GTTTCTT-TTCTATGCCCC-GGAACAA------TGTCTCCTCTCTGATT-----------CTTGTACCTGGAATATCTGTTGCTGGACTATACTTCACTCTCTGTTCCTA---G--------------AGAAG-----------------AAGCATA--
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58996923 287 + 153482349 ----agtgtttactg---------gtggatgaat--------gagtGA----------------TGATGTG-CTTTTGCATGAGAACA--------------CATCCTGTCCAAGGAGCCTCCTAGAGCTCCTGCCTCCCAGCTATAGCCT-CTGTCTCCCTTAGAA-CGCTGGGTGCACCTCAGGGCCTGCCCCAT-----GGGGA--TCTTGTGAACAGCCAC-TGTAGCATTATAAATTGTC------GTTTCTT-TTTTATGCCCC-GGAACAA------TGTCTCCTCTCTGACT-----------CTTGTACCTGGAATATCTGTTGTTGGACTATACTTCACTCTCTGTTCCTA---G--------------AGAAG-----------------AAGCACA--
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48089326 289 + 100215132 ----agtgtttactg---------gtggatgaat--------gagtGA----------------TGGTGTG-CTTCTGCATGAGAACA--------------CACTCTGTCCAAGGAGCCTCCTAGAGCTCCTGCCTCCCAGCTATAGCCT-CTGTCTCCCTTAGAA-TGCTGGGTGCACCTCAGGGCCTGCCCCAT-----GGGGA--TCTTGTGAACAGCCAC-TGTAGCACCATAAATTCTC--TT--GTTTCTT-TTCTATGCCCT-GGAACAA------TGTCTCCTCTCTGATT-----------CTTGTACCTGGAATATCTGTTGCCGGACTATACTTCACTCTCTGTTCCTA---G--------------AGAAG-----------------AAGCACA--
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61640184 291 + 150158102 ----agtgtttactg---------gtgaatgaat--------gagtGA----------------TAATGTA-CTTCTGCATGAGAACA--------------CACCCTGTCCAAGGAGCCTCCTAGAGCTCCTTCCTCCCAGCTATAGCCT-CTGTCTCCCTTAGAA-CGCTGGGTGCACCTCAGGGCCTGTCCCAT-----GGGGA--TCTTGTGAACAGCCACTTGTAGCACTATAAATTCTC--TT--CTTTTTTATTTTATGCGCC-GGAACAA------TGTCTTCTCTCTGATC-----------CTTGTACCTGGAATATCTCTTGCCGGACTATACTTCAGTTTCTGTTCCTA---G--------------AGAAG-----------------CAGCACA--
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58313101 290 + 146850525 ----AGTGTTTACTG---------GTGAATGAAT--------GAGTGA----------------TAATGTA-CTTCTGCATGAGAACA--------------CACCCTGTCCAAGGAGCCTCCTAGAGCTCCTTCCTCCCAGCTATAGCCT-CTGTCTCCCTTAGAA-CGCTGGGTGCACCTCAGGGCCTGTCCCAT-----GGGGA--TCTTGTGAACAGCCACTTGTAGCACTATAAATTCTC--TT--GTTTTTT-TTTTATGCGCC-GGAACAA------TGTCTTCTCTCTGATC-----------CTTGTACCTGGAATATCTCTTGCCGGACTATACTTCAGTTTCTGTTCCTA---G--------------AGAAG-----------------CAGCACA--
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53238991 292 + 139301422 ----agtgtttactg---------gtgaatgaat--------gagtGA----------------TGATGTA-CTTCTGCATGAGGACA--------------CACCCTGTCCAAGGAGCCTCCTAGAGCTCCTGCCTCCAAGCTATAGCCT-CTGTCTCCCTTAGAA-CGCTGGGTGCACCTCAGGGCCTGTGCCAT-----GGGGA--TCTTGTGAACAGCCACTTGTAGCACTATAAATTCTC--TTGGGTTTTTT-TTGTATGCCCC-GGAACAA------TGTCTTCTCTCTGATC-----------CTTGTACCTGGAATATCTCTTGCCGGACTATACTTCAGTTTCTGTTCCTA---G--------------AGAAG-----------------CAGCACA--
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234      11902 280 +    110629 ----agtgtttactg---------gtgaatgaat--------gagtGA----------------TGA-----CTTCCGCATGAGAACA--------------CACCCTGTCCAATGAGCTTCCTGGAGCTCCTGCTTCTGAACTATAGCCT-CTGCCTCTCTTAGAA-TGCTGGGTGCACATCAGGGCCTGCCCTA------GGGGG--TCTTGTGAACAGCCAC-TGTAGCACTATAGATTCTC--TT--GTCTCTT-TTCTGTGCCCCTGGAGCAA------TGTCTCCTCTCTGATT-----------CTTATAGCTGGACTATCTCTTGCCGGACTA-----TACTCTCTATTCCTA---G--------------AAAAG-----------------AAGCACA--
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2750550 291 +  10880647 ----AGTGTTTACTG---------GTGAATGAGT--------GAGTGA----------------TGA-----CTTCTGCATGAGAACA--------------CACCCTGTCCAGTGAGCTTCCTAGAGCTCCTGCTTCCGAGCTATAGCCT-CTGCCTCTCTTAGAA-TACTGGGTGCAGCTCAGGGCCTGCCCCATGACAGGGGAG--TCCTGTGAACAGCCAC-TGTAGCACTGTAGATTCTC--TT--GTCTCTT-TTCTGTGCCCCTGGAGCAA------TGTCTCCTCTCTCGTT-----------CTTATAGCTGGACTATCTCTTGCCGGACTGTACTTTACTTTCTGTTCTTA---G--------------AAAAG-----------------CAGCACA--
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21553011 281 -  23169006 ----AGTGTTAGTGA---------GTGAGTGCGT--------GAGTGC----------------ACATATGACTTCTGCATGACAGCA--------------GACCCTGTCCAGTG-GCCTGCTAGAGCTCTTGCTTCCTGGA---------------CCATTACAACCACTGGGTTCCTCTCGGGGCCTG-CCCGT-----GGGGG--TCTTCTGGGTAGCCAC-TGTGG--------GGTCCC--TT--GTCTCC--ACCTGTGCTCCTGGTGCAGACTCTCAGCCTCATCCCTAATT-----------CTTACTCCTGGAGCATTTGTTG------GACAGCTCTAGCTCTGTTCCCA---GGGAGAGTAGAATCAGGAAA-----------------AGGCAGA--
i otoGar3.GL873541         I 281 C 0
s speTri2.JH393342          4224187 276 -   9676502 ----AGTTTTTAC------------TGAACGAGT--------GGAACA----------------TGA-----CTTCTGTGTGTCAGCA--------------GA-CCTGT-CAGGTAACCTCCCGGATCTCATTCTGTCCAGCCACAGCCT-CTG-CTCCTTGAGGA-CCACTGGCTCATCACA-GGCCTGCCCCCA-----AGGAG--TCTGGCCAGCAGTCGC-TGC-----------TCCTC--CT--GCCTTC--CTCTGCACCCA-GGAGCGC------TCCCTCA--CCTGATT-----------CTTGTATCTGAAGTGTCTGCTGCTGGGCTGTACTTCAGTTCCTGTTTCCA---G-GGGAGCAGAATT-GGGAG-----------------AAGCAGT--
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907         11148793 258 +  17242564 ----GGTGTCTGCTG--------AATGAATGAGT--------GAATGA----------------TAACCTGACTTCTGCATGACAGCA---------------AGCCCTTCCAAGTAGCCTCCTAGAGCTCTTGCTTCTGGGTCACGGTCT-CTGCCTCCTTCAAAATCCCTGTGCACCATCTCAGGGCTGCCCCGT-----GAGAA--TTTTGTGAACAAGCAT-TGTAG----------------------------------------------------------CAGCCCTGATT-----------CTCAGAACTGA-GCATCT---CCTGGGCTTTGCTTGTATCTCTGTTCCCA---G--------------GGAGAGTGGAGTGTAGGGGAGAGACAGAA--
i orcOrc1.KB316907         I 4 C 0
s equCab2.chr15            84382097 285 +  91571448 ----agtgtctgttg--------aatgaatcaat--------GAATGA----------------TAACATGGCTTCTGCTTGACAGCA---------------GCCCTTTCCAAGTGGTCTCCTGGAGCTCTTGCTTCC-GGCCACAGGCT-CCGCCTCCTTTAGGA-CCCTGGGCTGTGTCTCAGATCAGCCC---------ATAG--TTTTGTGAGCAGCCAA-TGTAGTA--------GCCC--TT--GTCTCCCGCTCTA---CCT-GGAGCAA------AGTCCCAGCCCTAACT-----------CTCAGACCTGG-GCATCTA--GCTGGGCTTTGCTTTGATCTCTGTTCCCA---G--------------GGAGAGTGGAATGTGGGG----GACAGAA--
i equCab2.chr15            I 4 C 0
s cerSim1.JH767782          7120736 295 -  14545593 ----agtgtctattg--------aatgaatgaatgaatgaacgaatga----------------TAGCACAACTTCTGCATGACAGCA---------------GCCCTTTCCAAGTAGTCTCGTGGAGTTCTTGCTTCCGGGCCACAGCCT-CTGCCTCTTTTAGAA-CCCTGGGCTCCGTCTCAGATTTGCCC---------ATAG--TTTTGTGAGCAGCCAC-TGTAGTA--------GCCC--TT--GTCTCCCACTTGA---CCT-GGAGCAG------AGTCCCAGCCCTAACT-----------CTCAGACTTGG-GCATCTC-TGCTGGGCTGTACTTCGATCTCTTTTCCCA---G--------------GGAGAGTGGAATAGGGAG----CACAGAA--
i cerSim1.JH767782         I 4 C 0
s pteAle1.KB030580         19646399 277 -  23789964 ----AGCGTCTGTtg--------agtgaaagagtgaatgagtggatgagtggatgagtgaaGGGTCATGTGACTTCCGCA-----------------------------------------CCAGAAGCTCCTGCTTTCAGGTCACTGCCTGTTCCCTCCTCTAGGA-CCCTGGGCTGCGTGCTGGGCTGCCCC---------AGGGGAGTTTGTGAGCAGCCGC-T--------------GCCC--TG--GGCGTCTCTTCCG---GGC-AGAGCAC------AGCCCCAGCCCCAGCCCCGTCCTCGGACCTGGGCCTGG-GCACCT---GCTGGCCTTTGCTTTCGTCTCTGTTCCCA---G--------------GGAGAGTG------------------GAA--
i pteAle1.KB030580         I 4 C 0
s dasNov3.JH567436          1565987 307 -   2788317 agtaagagttttctgactgaatgaTTGAATGAAT--------GAACAA----------------TAACATGACTTCTGAGTGATAGCAACTAATGTCTTCCTCCTCCCTTCCACGTACTTTCTTAGAGCGTTTGCTTCCAGGCTGTAGTCT-CTGCCTCCTTTAGAA-ACAGGGATTTATCTCAGGACCTGCTCCAG-----AAACG--TCTTATGAATAGCCAT-TGTAGT--------TGCAC--TT--GTCTTCTGCTCTCTACTCCTGGCACAA------AGTCCCATCCCTAATT-----------CTTATCCCTGGAGCATCTGCTGCTGGACT---------TTTGTCCTCCTGAATG--------------GGAAT-----------------AGACACATG
i dasNov3.JH567436         C 0 C 0
e triMan1.JH594629         10398121   1 +  24341844 I
e loxAfr3.scaffold_20      28049162   2 -  46401353 I

a score=299366.000000
s hg38.chr8_KI270814v1_alt    18659 53 +    141812 GGGCTGGAAAGGAGGGAAGGGCTGAATG----TAGGGAGCCTCAC-CACTTAGGTTGT
s panTro4.chr8             54959683 53 + 143986469 GGGCTGGAAAGGAGGGAAGGGCTGAATG----TAGGGAGCCTCAC-CACTTAGGTTGT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58997210 53 + 153482349 GGGCTGGAAAGGAGGGAAGGGCTGAATG----TAGGGAGCCGCAC-CACTTAGGTTGT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48089615 53 + 100215132 GGGCTGGAAAGGAGGGAAGGGCTGAATG----TAGGGAGCCTCAC-CACTTAGGTTGT
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61640475 53 + 150158102 GGACTGGAAAGGAGGGAAGGGCTGAATG----TAGGGAGCCTCAC-CACTTAGGTTGT
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58313391 53 + 146850525 GGACTGGAAAGGAGGGAAGGGCTGAATG----TAGGGAGCCTCAC-CACTTAGGTTGT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53239283 52 + 139301422 GGACTGGAAA-GAGGAAAGGGCTGAATG----TAGGGAGCCTCAC-CACTTAGGTTGT
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234      12182 53 +    110629 GGGCTGGAAATGAGGGAAGGGCTGAATG----TAGGGAGCCTCTC-CACCTAGGTTGT
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2750841 52 +  10880647 GGGCTGGAAATGAGGGGAGGGCTGAATG----TA-GGAGCCTCTC-CACCTAGGTTGT
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21553292 57 -  23169006 GGGTTTGAAAATAGGGAAGGAGTGAATGAACATAGGGAGCCTCTC-TGTTTAGGTTAT
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4224463 50 -   9676502 GGGCTGG--GGTAAGGAAGGGGTGTGTG----TAGGGAG-CTCCC-TACCTAGGCCAT
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907         11149051 51 +  17242564 GGGATGGGAATGGGGGAATGGGTG--GA----GGGAGAGCCTTTCTCACTT-GGTTAG
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84382382 53 +  91571448 GGGGTGGGAAA-GGGGAATGGAGGCATA----GAGAAAACCTCTCCCCCTTAGGTTAT
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7121031 54 -  14545593 GGGATGGGAAAGGGGGAATGGATGTATA----GAGAGAGCCTCTCCTACTTAGGTTAT
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19646676 42 -  23789964 GGGGCGGGGCGGGGGG----------TG----GAGAGAGC--CCCCCACGTAGGCCAT
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20      28049164 54 -  46401353 GGGGTGAGAATGGGGGCTTGGGTGTATA----TAGCAAACCTGTTGCCCTGAGGTTCT
i loxAfr3.scaffold_20      I 2 C 0
s triMan1.JH594629         10398122 54 +  24341844 gggatgggaatgggggattgggtgTATA----CAGAGTACCTGTTGCCTGTAGGTTAT
i triMan1.JH594629         I 1 C 0
s dasNov3.JH567436          1566294 52 -   2788317 GGGGCAGAAAT--GGCCATGGATGTAAA----TAGGGAGTCCCTTGTATTTAGGTTAT
i dasNov3.JH567436         C 0 I 946

a score=1552217.000000
s hg38.chr8_KI270814v1_alt    18712 263 +    141812 GGAAGAGGAGAGGGAAGAGAAATGTGTTTCAGGCATAGCCAATTGGAAA----AAGACAT---TTTTT--CTAGAGAAGATAGCACAGTGTGGCCAGGTTCTTTTAT--ATTGGAGT------GTG--TTAAACAAGTTTTTGTGGATGGGTGTGGAAACGCAGGTGACCTTTGTGTA----------TTTTG--TTCTTTGTCTTCTAACTTTTCTGTGGGAAAAATTTGTTTTGAGTTCC-AAAAATTAGTCTC-ATATTTCTGGAACACAGCACGAGAGAACTGCCAATATTC
s panTro4.chr8             54959736 263 + 143986469 GGAAGAGGAGAGGGAAGAGAAATGTGTTTCAGGCATACCCAATTGGAAA----AAGACAT---TTTTT--CTAGAGAAGATAGCACAGTGTGGCCAGGTTCTTTTAT--ATTGGAGT------GTG--TTAAACAAGTTTTTGTGGATGGGTGTGGAAACGCAGGTGACCTTTGTGTA----------TTTTG--TTCTTTGTTTTCTAACTTTTCTATGGGAAAAATTTGTTTTGAGTTCC-AAAAGTTAGTCTC-ATATTTCTGGAACACAGCACGAGAGAACTGCCAATATTC
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58997263 263 + 153482349 GGAAGAGGAGAGGGAAGAGAAATGTGTTTCAGGCATACCCAATTGGAAA----AAGACAT---TTTTT--CTAGAGAAGATAGCACAGTGTGGCCAGGTTCTTTTAT--ATTGGAGT------GTG--TTAAACAAGCTTTTGTGGATGGGTGTGGGAACGCAGGTGACCTTTGTGTA----------TTTTG--TTCTTTGTTTTCTAACTTTTCTATGGGAAAAATTTGTTTTGAGTTCC-AAAAATTAGTCTC-ATATTTCTGGAACACAGCACGAGAGAACTGCCAATATTC
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48089668 263 + 100215132 GGAAGAGGAGAGGGAAGAGAAATGTGTTTCAGGCATATCTAATTGGAAA----AAGACGT---TTTTT--CTAGAGAAGATGGCACAGTGTGGCCAGGTTCTTTTAT--ATTGGAGT------GTG--TTAAACAAGTTTTTGTGGATGTGTGTGGGAACACAGGCGACCTTTGTGTG----------TTTTG--TTCTTTGTTTTCTAACTTTTCTATGGGAAGAATTTGTTTTGAGTTCC-AAAAATTAGTCTC-ATATTTCTGGAACACAGCACGAGAGAACTGCCAATATTC
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61640528 264 + 150158102 GGAAGAGGAGAGGGAAGAGAAATGTGTTTCAGACATACCCAGTTGGAAT----AAGACAT--TTTTTT--CTAGAGAAGATAGCACAGTGTGGCTGGGTTCTCTGAT--ATTGGAGT------GTG--TTAAATAAGCTTTCGTGGATGGGTGTGGGAACACAGGTGACCTTTGTGTA----------TTTTG--TTCTTTGCTTTCTAACTtttctatgggaaacatttgttttgagttcc-aaaaaatagtctt-atatttttggaacacagcATGAGAGAACTGCCACTATTC
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58313444 264 + 146850525 GGAAGAGGAGAGGGAAGAGAAATGTGTTTCAGACATACCCAGTTGGAAT----AAGACAT--TTTTTT--CTAGAGAAGATAGCACAGTGTGGCTGGGTTCTCTGAT--ATTGGAGT------GTG--TTAAATAAGCTTTCGTGGATGGGTGTGGGAACACAGGTGACCTTTGTGTA----------TTTTG--TTCTTTGCTTTCTAACTtttctatgggaaacatttgttttgagttcc-aaaaaatagtctt-atatttttggaacacagcATGAGAGAACTGCCACTATTC
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53239335 265 + 139301422 GGAAGAGGAGACGGAAGAGAAATGTGTTTCAGACATACCCAGTTGGAAT----AAGACAT--GTTTTT--CTAGAGAAGATAGCACAGTGTGGCCGGGTTCTCTGAT--ATTGGAGT------GTG--TTAAATAAGCTTTTGTGGATGGGTGTGGGAACACAGGTGACCTTTGTGTA----------TTTTG--TTCCTTGCTTTCTAACTTTTCTATGGGAAACATTTGTTTTGAGTTCCAAAAAAATAGTCTC-ATATTTTTGGAACACAGCACGAGATAACTGCCATTATTC
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234      12235 267 +    110629 GGAAGAGGAGAGGGAAGAGAAATGTGTTTCAGGCATATTCAGTTGGAAT----AAGACATTTTTTTTT--CTGGAGAACATAGCACAGTGTGGCTGTGTTCTGTGAT--AAGGGAGT------GTG--CTGAACAAGATTTTGTGAATGGGTGTGGGAACACGGGTGACCTTTGTGTA----------TTTTG-TTTCTTGGTTTTCTAACTTTTTAATGGGAAAAATTTGTTTTGAGTTCC-AAAAAATGATCTC-ATACTTTTGGAACACAGCATGAGAGAACTGCCAATATTC
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2750893 266 +  10880647 GAAAGAGGAGAGGGAAGAGAAATGTGTTTCAGGCATGTTCAGTTGGAAT----AAGACATTTTTTTTTTCCTAGAGAACATAGCACAGTGTAGCTGCGTTCTGTGAT--AATGGAGT------GTG--CGAAACAAGATTTTGCGAATGGGTGTGGGAACGTGGATGATCTTTGTGTA----------TTTGG-TTTTTCTGTTTTCTGACTTTTTAATGGGAAAAAATTGTTTTGAGTTCC-AAAAAA-GGCTTC-AT--TTTTGGAGCACAGCATGAGAGAACTGCCAATATTC
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21553349 225 -  23169006 GGAAGAGGAAGGGGAGGAGAAATGTGTTC-------------------------AGGCAT---TTCCC--CTGGAGAATGTAGCACAGTGTG-----GTTCTGGGGT--ATTCAGAT------GTG--CTAATTGAGCTTGTATGTATGGGTGTGGGACACTAAGTGTCCTTTGCATA----------TTATG--TTCCTTGCTTTTTAACTTTTCCATGGGAAAGATTTATTTGGAGTTCC-AGAAAATAGTTTG-AGATTTTTGGAACACAGCACACGAGGA------------
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4224513 229 -   9676502 GGGAGAGG-GAGGGAATAGCAATGGGTTTCAGGCACAGCGAATTGGCA----------------------TTAGA-AAGACAGGGCTTTGTG--------------T--ATTCTACT------GTG--CTGAAGAGGCTTTTGTGGATGGTCGTGGGAATCAAGGC-ACCTTCTTGTA----------TTTCA--TTTTTTGTTTTTTAACTTTTCTATGGGAAAA-----TTTTGAGTTCC-AAAAAATAGTCTTGAGATGTTTGGAACACAGCACAAGGGAACTGCCATTGTTT
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907         11149102 274 +  17242564 AAGAG-GAAGGAGGA-TAGCGATGTGTTTCAGGTGCTCCCAGCTGGGGCTGGGA-GGCAT---TTTCC--CTGGAGAAGGTAGCGCAGCGTGGCTGCGTCCCGTGGT--GTTCTGat------ggg--ctcaataggcttctgtggatgggcgtgagaacctaagtgcccttcatgttagttttgcgtttttgcgttttttgttttttaacttttctatggggaa-gcttgtttcgagttcc-aaaaaacagtccc-aga-ttttggaacacGGCACAAGGCAACTGCCCTTGTTT
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84382435 258 +  91571448 CGAAG-GGAGAAGGAGAAGAAATGTGTTTGAGACATACCCAACTGGAGTTAGGAAGGCCT---GTTCC--CTGCAGAAGGT-TGCCAGGGTGGCTGCATTCTGTGGT--ATTCTGGC------GTg--ctaaataagcttttgtgaatgggcgtgggaacctaagtgcccttcgtggtaatt------ttttg---------ttttttaacttttctatgggaaa-acttgttttgatttcc-aaaa---agtctc-agacttttgggacacagcACAAGGGAACTGCCATTATTT
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7121085 261 -  14545593 AGAAG-GGAAAGGGAGTATAAATGTGTTTGAGGCATACCCAACCGCAGTTAGGAAGGCCT---TTTCC--CTGGAGAAG----CACAGGGT-CCTGGGTTCTGTGGT--ATTCTGGt------gtg--ctaaataagcttttgtggacagacgtgggaacctaagtgcccttcatgttagtt------ttttg--ttttttattttttaacttttctatgggaaa-acttgttttgagttct-gaaa---agtctc-agacttttggaacacagcACAAGGAAACTGCCGTTATTT
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19646718 216 -  23789964 GGAAG-CG---GGGTGCGGAACCGTGTCTCAGCTCGGCC--GCGGGGGTCGGGACGGC--------------------------------------GGTGCGGTGGC--ACCCCGCCCCCCCTGTG--CCAACCACGCTT-----------CGTGGGGACCCGAGTGCCCTGCACGTCAGTT-----GTTTTG---------TTTTTTAACTTTTCCGTGGGAAA-ACTTGTTTCGCATCTC-AAAA---AACCTC-AGACCTTTGGAACGCAGAACAAGGAAGGT-CCATTATTT
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20      28049218 265 -  46401353 AGAAGAGGAAGGGGACTAGAAATGTGTTACAGACATACCTGCTTGGAATGAGGAAGGCGT---TTTCC--CTAGAGAAGGTA--ACAACATGGCTGGGTTCCGTGGCTGAATGTGCT------GCGTCCTCaataagcttttgtggagtagcgtgggaacctaagcactgttcatgta----------ttcca-----tttgtttt-tagtttttctatgagaaagttttgtttagagttcc-aggaaacattctt-agacttttggaacacagcATAAGGGAACTACTATTATTT
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10398176 268 +  24341844 AGAAGAGGAAGGGGACTAGaaatgtgttgcaggcatacctgatgggaattaggaaggcgt---tttcc--ctagagaaggta--acagcatggctgggtgccatggctaaatgtgct------gtg--ctaaataagcctttgtggagcggcatgggaacctgagcactgttcgtgta----------tttca-tttttttgttttgtaatttttctatgagaaagttttgttatgagttcc-ataaaacattctt-agacttttggaacacagcataagggaactgcTGTTATTT
i triMan1.JH594629         C 0 C 0
e dasNov3.JH567436          1566346 946 -   2788317 I

a score=971945.000000
s hg38.chr8_KI270814v1_alt    18975 114 +    141812 AAATATAAACAGCAGAAACATGGGATGG---TTAAAGTGGGAAGAGTGGACA-------CCTATTAACCTTGGGAAG---------TTAAGCTGAAATACTTTC-TTTATAACTTGG-AAGTAATTTTTAATGAT
s panTro4.chr8             54959999 114 + 143986469 AAATATAAACAGCAGAAACATGGGATGG---TTAAAGTGGGAAGAGTGGACA-------CCTATTAACCTTGGGAAG---------TTAAGCTGAAATACTTTC-CTTATAACTTGG-AAGTAATTTTTAATGAT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58997526 114 + 153482349 AAATGTAAACAGCAGAAACATGGGATGG---TTAAAATGGGAAGAGTGGACA-------CCTATTAACCTTGGGAAG---------TTAAGCTGAAATACTTTC-TTTATAACTTGG-AAGTAATTTTTAATGAT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48089931 111 + 100215132 AAATATAAACAGCAGAAACATGGGATGG---TTAAAATGGGAAGAGTGGACA--------CTATTAA-CTTGGGAAG----------TAAGCTGAAATACTTTC-GTTATAACTTGG-AAGTAATTTTTAATGAT
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61640792 114 + 150158102 AAATATAAACAGCAGAAACATAAGATGG---TTAAAATGGAAGGAGTGGACT-------CCTATTAACCTTGGGAAG---------TGAAGCTGAAATACTTTC-TTTATAACTTGA-AAGTAATTTTTAATGAC
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58313708 114 + 146850525 AAATATGAACAGCAGAAACATAAGATGG---TTAAAATGGGAGGAGTGGACT-------CCTATTAACCTTGGGAAG---------TGAAGCTGAAATACTTTC-TTTATAACTTGA-AAGTAATTTTTAATGAC
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53239600 114 + 139301422 AAATATAAACAGCAGAAACATGGGATGG---TTAAAATGGGAAGAGTGGACA-------CCTATTAACCTTGGGAAG---------TTAAACTGAAATACTTTC-TTTATAACTTGA-AAGTAATTTTTAATGAC
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234      12502 113 +    110629 AGATATAAATAGGAGAAATAGGGGAT-G---TTAAAATGGGAAGAGTGGACT-------CCTATTAACCTTGAGAGG---------TTAAGCTGAAATAC-TTC-CTTATAACTTGGAAAGTAATTTTTAATAAG
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2751159 114 +  10880647 AGATATAAACAGGAGAAATAGGGGAT-G---TTAAAATGGGAAGAGTGGACT-------CCTATTAACCTTGAGAAG---------TTAAGCTGAAATACTTTC-CTTATAACTTGGCAAGTAATTTTTAACAAG
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21553574 119 -  23169006 -------AGCAGCAGAAATGTGGTATGG---TTAAAATGGGAAGAGTGGAAA-----AGTGTGTTAACCCTGAGAAGTTAAACTACTTAAGTTAAACTATTTTC-TTAATAATTTGGCAAATAACTTTCAACAGT
i otoGar3.GL873541         C 0 I 154
s speTri2.JH393342          4224742 113 -   9676502 CAGTCTAAATAGCAGAAATGTGGGCC-A---TTAAAATGG-AAGAGTGGAGA-----ACCTTCTTTGCCATGAGAAA---------TGGAACTGAAATA-TTTC-TTTGTAATGTTG-CAGTTGATtttaaaaaa
i speTri2.JH393342         C 0 I 20
s orcOrc1.KB316907         11149376 125 +  17242564 AAATATAAACAGCAGAAATGTGGGATAGTTATTAACATGGGAAGCATGTTAACCTTGAGCCTGATAACCTTGAGAAG---------TTAAGCAGAAGTATTTTC-TTTATAACCTGGCAAGTAATTTTCACCAAA
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84382693 117 +  91571448 AAATATAAACAGCAGAAATGTGGGATGG---TTAACATGGGAAGGGTAGAAA-----AGCCTGTTAACCTTGAGAAG---------ATAACTTGAAGTATTTTC-TTTATAACTTGGCAAGTAATTTTCAACAAA
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7121346 117 -  14545593 ACATATAAATAGCAGAAATGTGGGATGG---TTAACATGAGAAGGGTGGAAA-----AGCCTGTTAACCTTGAGAAG---------TTAAACTGAAGTATTTTC-TTTATAACTTGGCAAGTAATTTTCAACAAA
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19646934 117 -  23789964 AAATACGAGCAGCAGAAATGTGGGATGG---TTAAAATGGAAAGGGTGGGAA-----AGGCCGTTGGCCTTGAGAAG---------TTAAGCGGAAGTATTTTC-TTTATGACTCGGTGAGTCATTTTCAACAAA
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20      28049483 113 -  46401353 AAATATGAACAGCAGAAATGTGG----G---TTCAAATGGGAAGGATGGAAA-----AGCCTGTTAACCTTGAGAAG---------TTAAGCTGAAATGTTTTC-TTTATAACTTGGCATGTAATTTTCAGCAAA
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10398444 113 +  24341844 AAATATGAACAGCAGAAATGTGG----G---TTAAAACGGGAAGGATGGAAA-----AGCCTGTTATCCTTAAGAAG---------TTAAGCTGAAATATTTTC-TTAATAACTTGGCATGTAATTTTCAACAAA
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436          1567292 118 -   2788317 AAATATAAATAGCACAAATGTGGGGTAG---TTAAAATGGGAAGGGTGGAAA-----AGCCTGTTAACATTGAGAAG---------TTAAACTGAAGTATTTTCTTTTATACCTTGGTAAGTTATTTTCAACAAA
i dasNov3.JH567436         I 946 C 0

a score=4568.000000
s hg38.chr8_KI270814v1_alt    19089 1 +    141812 G
s panTro4.chr8             54960113 1 + 143986469 G
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58997640 1 + 153482349 G
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48090042 1 + 100215132 G
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61640906 1 + 150158102 G
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58313822 1 + 146850525 G
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53239714 1 + 139301422 G
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234      12615 1 +    110629 G
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2751273 1 +  10880647 G
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21553847 1 -  23169006 A
i otoGar3.GL873541         I 154 C 0
s speTri2.JH393342          4224875 1 -   9676502 g
i speTri2.JH393342         I 20 I 121
s orcOrc1.KB316907         11149501 1 +  17242564 A
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84382810 1 +  91571448 A
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7121463 1 -  14545593 A
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19647051 1 -  23789964 A
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20      28049596 1 -  46401353 A
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10398557 1 +  24341844 A
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436          1567410 1 -   2788317 A
i dasNov3.JH567436         C 0 C 0

a score=768936.000000
s hg38.chr8_KI270814v1_alt    19090  99 +    141812 TAAATGACCCAAA-----GAAA-ACATGTAAAAGATGGA---------------------AGTATATGCAGCAAAATTGCATAAATCTAATGGGTTGCCAAGCTGTGTATGGGATTATATTGTAAG
s panTro4.chr8             54960114  99 + 143986469 TAAATGACCCAAA-----GAAA-ACATGTAAAAGATGGA---------------------AGTATATGCAGCAAAATTGCATAAATCTAATGGGTTGCTAAGCTGTGTGTGGGATTATATTATGAG
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58997641  99 + 153482349 TAAGTGACCCAAA-----GAAA-ACATGTAAAAGATGGA---------------------AGTATATGCAGCAAAATTGCATAAATCTAATGGGTTGCCAAGCTGTGTATGGGATTATATTGTAAG
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48090043  99 + 100215132 TAAATGACCCAAA-----GAAA-ACATGTAAAAGATGGA---------------------AGTATATGCAGTAAAATTGCATAAATCTAATGGGTTGCTAAGCTGTGTATGGGATTATATTGTAAG
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61640907  99 + 150158102 TAAATGACCCAAA-----GAAA-ACATGTAAAAGATGGA---------------------AGTATATGCAATAAAATTGCATAAATCTAATGGGTTGCCAAGCTGTTTATGGGATTATATTGTAAG
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58313823  99 + 146850525 TAAATGACCCAAA-----GAAA-ACATGTAAAAGATGGA---------------------AGTATATGCAATAAAATTGCATAAATCTAATGGGTTGCCAAGCTGTTTATGGGATTATATTGTAAG
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53239715  99 + 139301422 TAAATGACCCAAA-----GAAA-ACATGTAAAAGATGGA---------------------AGTATATGCAGTAAAACTGCATAAATCTAATGGGTTGCCAAGCTGTATATGGGATTATATTGTAAG
i chlSab2.chr8             C 0 I 121
s calJac3.chrUn_GL286234      12616  99 +    110629 CAAATGACCCAAA-----GAAA-ACATGTAAAAGATGGA---------------------AGTATATGGAGTAAAATTGCATAAATCTAATGGGTCGCCAAGTTGTGTATGGAATTATAGTGTAAG
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2751274  99 +  10880647 CAAATGACCCAAA-----GAAA-ACATGTAAAAGGTGGA---------------------AGTATATGCAGTAAAATTGCATAAATCTAATGGGTCACCAAGTTGTGTATGGAATTATATTGTAAG
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21553848  96 -  23169006 TAAATGACCTAAA-----AAAA-AGACCT--AAGATGTA---------------------AGTATATGTCGTAAAATTGCATGTTTCTAA-GGATTGCCAAGCTATGTGTAAAACTGTGTTGTGAG
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4224997 101 -   9676502 TCAACAACACAAATTATGTAAA-AAATGGGAAAGATGTA---------------------AGTATATGCAGT-CAGTTGTGGGTATCTGACATGTTGCCC--CCTTGTGGGGGATTATTCTGAGAG
i speTri2.JH393342         I 121 C 0
s orcOrc1.KB316907         11149502  98 +  17242564 CAAATGACCTAAA-----GAAA-ACATGAAAAAGAGGTA---------------------GATACATAGAGGAAAACTGCATCTGT-GAACGGGTTGCCAAGCTTTGTATGGGATGATATTATAAA
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84382811  99 +  91571448 CAAATGACCTAAA-----GCAA-AAATGTAAAAGATGTA---------------------GATTTATACAGTAAAATTGCACATATCTAATGAGTTGCCAAGCTATGTGTGGGATTATATTGTAAG
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7121464  99 -  14545593 CAAATGACCTAAA-----GAAA-AAATGTAAAAGATGTA---------------------GATATATACAGTAAAATTGCATATATCTAATAGGTTGCCAAGCTATGTATGAGATTATATTGTAAG
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19647052 120 -  23789964 CAACCGACCTAGA-----GAAATAAGTATAAAAGACACACGTGACTGTCAAAGGTTTTCGTGTCTGCGCGGTGATGTTGGGTA-AACTCACGGGTTGCCGAGCCGGGCGCGGGGCTGTATCGTAAG
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20      28049597  95 -  46401353 TGAGTGACT-AAA-----GAAA-AAATGTAAAAGATGTA---------------------ATTGTATACAGTAAAATTG--TATGTGTAATGGGTTGCC-AAGTATGTATGGGATTATATTTGAAG
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10398558  98 +  24341844 TAAATGACT-AAG-----GAAA-ACATGTAAAAGATGTA---------------------GTTGTATACAGTAAAATTGTATATGTGTAGTGGGTTGCTAAAGTATATATGCAATTATATTTTAAG
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436          1567411  91 -   2788317 TAAATGACT----------TAA-AAATGCAAAC-ATGTA---------------------AATACATAAAGTAAAATTGCATGTTTGTATTGGGTAACCAAACTATATATGAGATTATATT--AAG
i dasNov3.JH567436         C 0 C 0

a score=546306.000000
s hg38.chr8_KI270814v1_alt    19189 82 +    141812 AACTGTAATTTTAAAGTGATTTTAAACATACCATCGTGTGGCTTAGCTGCCCACCAATTTGAACAAATACTTACTGTGTGCC
s panTro4.chr8             54960213 78 + 143986469 AACTGTAATTTTAAAGTGATTTTAAACATACCATCGTGTGGCTTAGCTGCCCACCAATTTGAACAAA----TACTATGTGCC
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58997740 81 + 153482349 AACTGTAATTTTAAAGTGATTTTAAACATACCATC-TGTGGCTTAGCTGCCCACCAATTTGAACAAATATTTATTGTGTGCC
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48090142 82 + 100215132 AACTGTAATTTTAAAGTGATTTTAAACATACCATCATGTGGCTTAGCTGCCCACCAATTTGAACAAATACTTATTGTGTGCC
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61641006 82 + 150158102 AACTGTAATTTTAAAGTGATTTTAAACATACCATCATGTGGCTTTGCTGCCCACCAATTTGAACAAATACTTATTGTGTGCC
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58313922 82 + 146850525 AACTGTAATTTTAAAGTGATTTTAAACATACCATCATGTGGCTTTGCTGCCCACCAATTTGAACAAATACTTATTGTGTGCC
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53239935 82 + 139301422 AACTGTAATTTTAAAGTGATTTTAAACATACCATCACGTGGCTTTGCTGCCCATCGATTTGAACAAATACTTACTGTGTGCC
i chlSab2.chr8             I 121 C 0
s calJac3.chrUn_GL286234      12715 74 +    110629 AGCTGTAATTTTAAAATGATTTTAAACATACCATCATGTG--------GCCCATCAATTTGAACAAATATTTATTGTGTTCC
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2751373 74 +  10880647 AGCTATAATTTTAAAGTGATTTTAAACATACCATCATGTG--------GCCCACCAATTTGAACAAATATTTATTGTGTGCC
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21553944 78 -  23169006 AACTGTAG---GAGACTGACGCTAAGGCTA-TATCATGTGGCCCAGCTACCCATCAGTTTTAACAAACATTTATTGTGTGCT
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4225098 78 -   9676502 AGCTGCAG---GAAAGTGGCTTCAAACCTCCCCTCAGGTGCCCCAGCTTCCC-TCAGGTTGGATCCGTCTTTATCCTGTGAC
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907         11149600 77 +  17242564 AGCTGTAA---GAAGGTGATTTTAACCCCACCGTCCCATGGCTCAGCTACCCACCAGTTTGAACAAACAC--CTTGTGTGCC
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84382910 79 +  91571448 AACTGTAG---GAAAGTGATTTTAAACCTACCCTCACATGGCCCAGCTATCCACCAATTTGAAGAAACGTTTATGGTGTGCC
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7121563 79 -  14545593 AACTACAG---GAAAGTGATTTTAAACCTGCCCTCACATCGCTCAGCTACCCACCAGTTTGAACAAACATTTACTGTGTGCC
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19647172 63 -  23789964 CGC-GTAG---CGAGGTGATTTCGCGCCTGCCACCGTG-GGCTCTGTG----ACCAGCGTGAGCAGACAT----------CC
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20      28049692 79 -  46401353 AGCTGTAG---AGAAATGTTTTTGAACCTATCATCATATGGTTCGGCTGCCCACCAATTTCAACAAATATTTGTTGTGTGCT
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10398656 79 +  24341844 AGCTGTAG---AGACTTGATTTTGAACCTATCATCATATGGTTCAGCTACCCACCAGTTTCAACAAACATTTGTTGTGTGCT
i triMan1.JH594629         C 0 I 219
s dasNov3.JH567436          1567502 67 -   2788317 AGCTGTAG---GGAAATAATTTTAAACCTATCA------------GGTACCTACCAATTTGAACAAAGATTTATCCTGTACT
i dasNov3.JH567436         C 0 C 0

a score=129669.000000
s hg38.chr8_KI270814v1_alt    19271 12 +    141812 ACAGTATTTCCA
s panTro4.chr8             54960291 12 + 143986469 ACAGTATTTCCA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58997821 12 + 153482349 ACAGTATTTCCA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48090224 12 + 100215132 ACAGTATTTCCA
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61641088 12 + 150158102 ACAGTATTTCCA
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58314004 12 + 146850525 ACAGTATTTCCA
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53240017 12 + 139301422 ACAGTATTTCCA
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234      12789 12 +    110629 ACAGTATTTCCA
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2751447 12 +  10880647 ACAGTATTTCCA
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21554022 12 -  23169006 GCAAAATTTCCA
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4225176 12 -   9676502 TAAAGACGTCCA
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907         11149677 12 +  17242564 ACAGTGTTTCCA
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84382989 12 +  91571448 ACAGTGTTTCCA
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7121642 12 -  14545593 ACAGTGTTTCCA
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19647235 12 -  23789964 ATGGTGTTTCCA
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20      28049771 12 -  46401353 ACAGTATTTCCA
i loxAfr3.scaffold_20      C 0 I 224
s triMan1.JH594629         10398954 12 +  24341844 ACAGTATTTCCA
i triMan1.JH594629         I 219 C 0
s dasNov3.JH567436          1567569 12 -   2788317 ATAGTATTTCTG
i dasNov3.JH567436         C 0 C 0

a score=208348.000000
s hg38.chr8_KI270814v1_alt    19283  83 +    141812 GAAACTCAAA------GGAGATGGGGCGCTTATTCTTTGAAACACAC-----AGTTG-----AGAACATT----------AAGACA---------------------------------------------------------------------------------------------------------------GTGATTCCTCCAACACATGA----------------------T----------------------------TA---------------------------------------------------------------------------------------------------------------------------------------------
s panTro4.chr8             54960303  83 + 143986469 GAAACTCAAA------GGAGATGGGGCGCTTATTCTTTGAAACACAC-----AGTTG-----AGAACATT----------AAGACA---------------------------------------------------------------------------------------------------------------GTGATTCCTCCAACACATGA----------------------T----------------------------TA---------------------------------------------------------------------------------------------------------------------------------------------
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58997833  83 + 153482349 GAAACTCAAA------GGAGATGGGGCCCTTATTCTTTGAAACACAC-----AGTTG-----AGAACATT----------AAGACA---------------------------------------------------------------------------------------------------------------GTGATTCCTCCAACACACGA----------------------T----------------------------TA---------------------------------------------------------------------------------------------------------------------------------------------
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48090236  83 + 100215132 GAAACTCAAA------GGAGATGGGGCCTTTATTCTTTGAAACACAC-----AGTTG-----AGAACATT----------AAGACA---------------------------------------------------------------------------------------------------------------GTGATTCCTCCAACACATGA----------------------T----------------------------TC---------------------------------------------------------------------------------------------------------------------------------------------
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61641100  83 + 150158102 GAAACTCAAA------AGAGATGGGGCCCTTATTCTTTGAAACACAC-----AGTTG-----AGAACATT----------AAGAAA---------------------------------------------------------------------------------------------------------------ACGATTCCTCCAACACATGA----------------------T----------------------------TA---------------------------------------------------------------------------------------------------------------------------------------------
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58314016  83 + 146850525 GAAACTCAAA------AGAGATGGGGCCCTTATTCTTTGAAACACAC-----AGTTG-----AGAACATT----------AAGAAA---------------------------------------------------------------------------------------------------------------ACGATTCCTCCAACACATGA----------------------T----------------------------TA---------------------------------------------------------------------------------------------------------------------------------------------
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53240029  83 + 139301422 GAAACTCAAA------GGAGATGGGGCCCTTATTCTTTGAAACGCAC-----AGTTG-----AGAACATT----------AAGACA---------------------------------------------------------------------------------------------------------------ATGATTCCTGCAACACATGA----------------------T----------------------------TA---------------------------------------------------------------------------------------------------------------------------------------------
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234      12801  79 +    110629 GAAATGCAAA------GGAGAT-GGGCTCTTA---TTTGAAATGCAC-----AGTTG-----AGAACATT----------AAGAGA---------------------------------------------------------------------------------------------------------------GTGATAACTGCAACACATGA----------------------T----------------------------TA---------------------------------------------------------------------------------------------------------------------------------------------
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2751459  83 +  10880647 GAAACTCAAA------GGAGATGGGGCTCTTATTCTTTGAAATGCAC-----AGTTG-----AGAACATT----------AAGAGA---------------------------------------------------------------------------------------------------------------GTGATTCTTGCAACACATGA----------------------T----------------------------TA---------------------------------------------------------------------------------------------------------------------------------------------
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21554034 232 -  23169006 GAAACTCAAA-----CAGAGGTGTGGTCCTTGCCCTCTGCAGTGCACAACTGAGTTG-----GGAACATCATAAATAAAAAAGACATAACTCTgggcagtgcctgtagctcaaggagtagggtgctggccccatatgctggaggtggtgggttcaaaacccagcccaggccaaaaactgcgaagaaaTAAAAAAGACATAATTCTGTCATTTCACGAGTCTTATAGTCAAACTGTGCAGT----------------------------TA---------------------------------------------------------------------------------------------------------------------------------------------
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4225188  76 -   9676502 GAAGCTCAGG------GGTAGTGG----------CCGTGCGGTCCAC-----ACCTC-----TGAACTTGGTTG------AGGGCG---------------------------------------------------------------------------------------------------------------GTCGTTCATGCAGCA-GTGC----------------------T----------------------------TT---------------------------------------------------------------------------------------------------------------------------------------------
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907         11149689  94 +  17242564 GAAACTCGGAGACAGTGGAGATGTGGTCCTTACCCTCTGATAGGCAC-----CGCTGAGTTAGAGATGTT----------AAGACA---------------------------------------------------------------------------------------------------------------GTCAGTCATGCAACAAGTAT----------------------T----------------------------TG---------------------------------------------------------------------------------------------------------------------------------------------
i orcOrc1.KB316907         C 0 I 91
s equCab2.chr15            84383001  93 +  91571448 GAAACTCAAAGATAGTGGCGATGTGGTCCTTATCCTCTGAAATGTGC-----TGTTCGGTT-GGGACATT----------AAGACA---------------------------------------------------------------------------------------------------------------GTCAGCCATGCAACAAATAT----------------------T----------------------------TC---------------------------------------------------------------------------------------------------------------------------------------------
i equCab2.chr15            C 0 I 94
s cerSim1.JH767782          7121654  92 -  14545593 GAAACTCAAATATAGTGGCGATGTGGTCCTTACCCTCTGAAATG-AC-----TGTTCAGTT-GGGACATT----------AGGACA---------------------------------------------------------------------------------------------------------------GTCAGTCATGCAACAAATAT----------------------T----------------------------Tc---------------------------------------------------------------------------------------------------------------------------------------------
i cerSim1.JH767782         C 0 I 92
s pteAle1.KB030580         19647247  85 -  23789964 GATGCTCAGAGATGGTGGACATGTGGTCCTCACCCTCTGGTTTG-CT-----TG--------GGGACATT----------AACACT---------------------------------------------------------------------------------------------------------------GCCAGTCATGCAGCAGATAC----------------------T----------------------------CA---------------------------------------------------------------------------------------------------------------------------------------------
i pteAle1.KB030580         C 0 I 108
s loxAfr3.scaffold_20      28050007 188 -  46401353 AGAACTCAAAGACAGTGGAGATGTGGTCCTTACTCTCTAAAATGCAC-----AGCTGACTT-GGAATATT----------AAGATA---------------------------------------------------------------------------------------------------------------Gtcattcatgcaacgtgtat----------------------t----------------------------taagaat-------cctgagagctgggatccagggaagaatgaagaagacataatctgtcttcttatga---------------------------------------agcttacagtcaaactgctgatcaccatgtggtta
i loxAfr3.scaffold_20      I 224 C 0
s triMan1.JH594629         10398966 189 +  24341844 GAAACTCAAAGACAATGGAGTTGTGGTCCTTACTCTCTAAGATGCAC-----AGTTGACTTGGGAACATT----------AAGATA---------------------------------------------------------------------------------------------------------------Gtcattcatgtaacaaatat----------------------t----------------------------ttagagt-------actgagtgctgggatc---------------------------------------cagggaggaatgaaaaagacatgatctgtcttctcatgaagctgacagtcaaactactggtccccgtgtgatta
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436          1567581 179 -   2788317 GAAAATCAAAGATAATGGGGTT----TTCTTACCCTCTAAAATGCAC-----GGTTAAGTCAGGGACATT----------AAGACA---------------------------------------------------------------------------------------------------------------TTCAAGCAAGAAAAATGTGT----------------------tatgctgggtgctggaatctagtgatgaataaaaatgacatggtctctctcct-------------------------------------------------------------------------------catgaaacttacggtcAAACTAC-AAACACAATCTGAATA
i dasNov3.JH567436         C 0 C 0

a score=120665.000000
s hg38.chr8_KI270814v1_alt    19366 17 +    141812 CTGTTACAAAAGAGGGG
s panTro4.chr8             54960386 17 + 143986469 CTGTTACAAAAGAGGGG
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58997916 17 + 153482349 CTGTTACAAAAAAGGGT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48090319 16 + 100215132 CTATTAC-AAAGAGGGG
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61641183 17 + 150158102 CTGTTACAAAAGAGGGG
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58314099 17 + 146850525 CTGTTACAAAAGAGGGG
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53240112 17 + 139301422 CTGTTACAAAAGAGGGA
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234      12880 17 +    110629 CTGTTATAAAAGAGGGG
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2751542 17 +  10880647 CTGTTACAAAAGAGGGG
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21554266 17 -  23169006 CTGCTACAGAAGAAGGA
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4225264 17 -   9676502 TTGCGCTGACAGTGGTG
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907         11149874 16 +  17242564 CTGTTATAAAAGAT-GA
i orcOrc1.KB316907         I 91 C 0
s equCab2.chr15            84383188 17 +  91571448 CTGTTACAGAAGAGACA
i equCab2.chr15            I 94 C 0
s cerSim1.JH767782          7121838 17 -  14545593 ctgttatagaagagaga
i cerSim1.JH767782         I 92 C 0
s loxAfr3.scaffold_20      28050195 17 -  46401353 ctgttataaaagaaggg
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10399155 17 +  24341844 ctgttgtaaaagaagga
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436          1567760 17 -   2788317 TTGCTTTCAAAGAAGGA
i dasNov3.JH567436         C 0 C 0
e pteAle1.KB030580         19647332 108 -  23789964 I

a score=-12898.000000
s hg38.chr8_KI270814v1_alt    19383 17 +    141812 TATAC-CATAAGCTGGGG
s panTro4.chr8             54960403 17 + 143986469 TAGAG-CATAAGCTGGGG
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58997933 17 + 153482349 TATAC-CATAAGCTGGGG
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48090335 17 + 100215132 TATAC-CATAAGCTGGGG
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61641200 17 + 150158102 CATAC-CAAAAGCTGGGG
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58314116 17 + 146850525 CATAC-CAAAAGCTGGGG
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53240129 17 + 139301422 CATAC-CAAAAGCTGAGG
i chlSab2.chr8             C 0 C 0
s otoGar3.GL873541         21554283 16 -  23169006 CGTAC-TGAGGGCTGAG-
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4225281 12 -   9676502 ----T-CAAAGGCAGCG-
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907         11149890  6 +  17242564 TGCCCT------------
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84383205  5 +  91571448 TGTCC-------------
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7121855  5 -  14545593 tgtac-------------
i cerSim1.JH767782         C 0 C 0
s loxAfr3.scaffold_20      28050212  7 -  46401353 tgtat-ta----------
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10399172  6 +  24341844 tgtac-t-----------
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436          1567777  7 -   2788317 TATAC-TA----------
i dasNov3.JH567436         C 0 C 0
e calJac3.chrUn_GL286234      12897  0 +    110629 C
e pteAle1.KB030580         19647332 108 -  23789964 I
e saiBol1.JH378179          2751559  0 +  10880647 C

a score=95932.000000
s hg38.chr8_KI270814v1_alt    19400 37 +    141812 TAGGGGT---GGGGGGG-ATCTGG-GAGGGAGCAACTAATGT
s panTro4.chr8             54960420 40 + 143986469 TAGGGGTGGGGGGGGGG-ATCTGG-GAGGGACCAACTAATGT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             58997950 37 + 153482349 TAGGGGT---GGGGGGG-ATCTGG-GAGGGAGCAACTAATGT
i ponAbe2.chr8             C 0 I 69631
s nomLeu3.chr16            48090352 37 + 100215132 TAGGGGT---GGGGGGG-ATCTGG-GAGGGAGCAACTAATGT
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61641217 37 + 150158102 TAGCAGT---GAGAGGG-ATCTGG-GAGGGAGCAACTAACAT
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58314133 37 + 146850525 TAGCAGT---GGGAGGG-ATCTGG-GAGGGAGCAACTAACAT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53240146 37 + 139301422 TAGGGGT---GGGAGGG-ATCTGG-GAGGGAGCAACTAACAT
i chlSab2.chr8             C 0 C 0
s otoGar3.GL873541         21554299 12 -  23169006 ----------GGGAG--------------------CTAACTT
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4225293 15 -   9676502 -AGGAGA---AGGAGGG-GT----------------------
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907         11149896 34 +  17242564 CAGGGCT---GAGGAAGCATAAAG-GAGTGA----CCAGCTT
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84383210 38 +  91571448 TAAGGGT---GAGGAAGCAGAAAG-GAGGGAGCCACTAGCTT
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7121860 38 -  14545593 taagggt---gaggaaacacaaag-gagggagccactagctt
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19647440 38 -  23789964 TAGGGCT---GAGGAAGCATAAAG-CAGGGAGAGGCACGCGT
i pteAle1.KB030580         I 108 C 0
s loxAfr3.scaffold_20      28050219 37 -  46401353 -agggct---gaagaagcataaag-gagggagctaccaactc
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10399178 37 +  24341844 -agggct---gaagaagcataaag-gagagagcgactaactt
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436          1567784 38 -   2788317 -AGGACT---GAGGAGGCATGAAGCGAAGAGGCGACTAACTT
i dasNov3.JH567436         C 0 C 0
e calJac3.chrUn_GL286234      12897  0 +    110629 C
e saiBol1.JH378179          2751559  0 +  10880647 C

a score=488570.000000
s hg38.chr8_KI270814v1_alt    19437 125 +    141812 GGAAAG-CAGT--AAAACCCAGACTAT----GTAT--CAGCCACTGACTGTG--TATTTAGTAGACTAAAACAGTTGGAAACAGAGTACAG-------ATATT---TGGTATTAAGTAGAATTCCGGTAACATATA-----TTT---AACATAT
s panTro4.chr8             54960460 125 + 143986469 GGAAAG-CAGT--AAAACCCAGACTAT----GTAT--CAGCCACTGACTGTG--TATTTAGTAGAATAAAACAGTTGGAAACAGAGTACAG-------ATATT---TGGTATTAAGTAGAATTCCGGTAACATATA-----TTT---AACATAT
i panTro4.chr8             C 0 C 0
s nomLeu3.chr16            48090389 124 + 100215132 GGAAAG-CAGT--AAAACCCAGACTAT----GTAT--CAGCCACTGACTGTG--TATTTAGTAGAATAAAACAGTTGGAAACAGAGTACAG-------ATATT---TGGTGTTAAGTAGAATT-CGGTAACATATA-----TTT---AACATAC
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61641254 126 + 150158102 GGAAAG-CAGT--AAAACCCAGACTAT----GTAT--CAGCCATTGACTGTG--TATTTAGTAGAATAAAACAGTGGGAAACAGAGTATTT------CATATT---TGATGTTAAGTAGAATTCCAGTAACATATA-----TTT---AACATAT
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58314170 126 + 146850525 GGAAAG-CAGT--AAAACCCAGACTAT----GTAT--CAGCCACTGACTGTG--TATTTAGTAGAATAAAACAGTTGGAAACAGAGTATTT------CATATT---TGATGTTAAGTAGAATTCCAGTAACATATA-----TTT---AACATAT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53240183 124 + 139301422 GGAAAG-CAGT--AAAACCTAGACTAT----GTAT--CAGCCACTGACTGTG--TATTTAGTAGAATAAAACAGTTGGAAACAGAGTATTT------CATATT---TGATGTTAAGTAGAATTCCAGTAAC--ATA-----TTT---AACATAT
i chlSab2.chr8             C 0 C 0
s otoGar3.GL873541         21554311 138 -  23169006 GGAAAG-TC-C--GGAACCCAGACTGT----GCAT--CAGCTACCAACTGTGTATATTCAGTAGAATGAGACAGTCAGAAACAGGGGACAGATAATACATATT---TGGTGTTAAGTATAATTATTCTGAAGTATAATTATTTT---AAAATAT
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4225308  77 -   9676502 ---------------------GACTGA----GTCC--CAGCCATTGAC------TATTCAGTGGAGTA----AGTCAGAAACGG------T------CACACT---ACAGGGTGAGTAT----------------------TTT---AAAATAT
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907         11149930 132 +  17242564 GGAAGG-TAGTAAAAAGAAGAAAGTGTTTCTACAC--CAGCCATTTACTATG--TGCTCAGCAGAATGAAACAGTTGGAAACAGAATACAG-------ACGTT---TGGTGTTAAATAGACTTATGCTAAAATATA-----TTTTTAAATAT--
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84383248 128 +  91571448 AGAAGG-CAG---GAAACCCAGACTGCATACATAT--CAGCCACTTACTATA--TGTTGAGTAGGGAAAAACAGTTGGAAACAGAGTATAG-------ATATT---TGGTGTTAAGAAGAATTATGCTAAAGTATA-----TTTTT-TAAAT--
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7121898 127 -  14545593 agaaagtcgg---aaaACCCAGACTGTATATATAT--CAGCCACTTACTATA--TGTTCAGTAGGATAAAACAGTTGGAAAC--AGTACAG-------TTATT---TGGTGTTAAGAAAAATTATGCTCAAGTATG-----TTTTT-AAAAT--
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19647478 128 -  23789964 GGGAAG-CAGT--AGAACCCGGACTGTTTAAGTAT--CAGCCG--TACTGCA--TAGTCAGCAGAATAAAACAATCGGAAACAGAGCACAG-------ATATT---TAGTGTTAAGTAGAATTATGCTAAGGTATA-----TTTTTAAAAAT--
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20      28050256 131 -  46401353 ggAAGG-TAGT--AAAACTCAGACTAT----ATATATCTGCCACTTACAGTA--TATTCAGTTTAATGAAATAGTCAACAGCAGAATACAG-------ATATTTGTTGGTATTAAGGAGAATTATGCTAAGGTATA-----TTTT--AAAATTT
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10399215 131 +  24341844 ggAAGG-CAGT--AAAACTCAGACTGT----GTATGTCAGCCACTTACAGTA--TATTCAGTTTAATGAAACAGTCAACAGCAGAATACAG-------ATATTTGCTGGTATTAAGTAGAATTATGCTCAAGTATA-----TTTT--AAAATAT
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436          1567822 121 -   2788317 TGAAAG-TAGT--AAAACCCAGACTGT----ATAT------CACTCCCTGTG--TACTCAGTAGAATAAAATACTCCACA-CAAAATATAG-------ATATT---TGGTGTTAACTTGAATTAAGTTAACATGCA-----TTTT--AAAATAT
i dasNov3.JH567436         C 0 C 0
e calJac3.chrUn_GL286234      12897   0 +    110629 C
e saiBol1.JH378179          2751559   0 +  10880647 C
e ponAbe2.chr8             58997987 69631 + 153482349 I

a score=760187.000000
s hg38.chr8_KI270814v1_alt    19562 124 +    141812 TGGGGCATATT---GTGATATTTTCCTCGGAAGTCTGCTTTA-------TTGATGATAAAA---TGGAACAGTGGA-CTAGAACATG--AAAAAAGACTGAATTCAAACTCTGACTT-ACGTGTGGTGGCCTTAGTGATTG
s panTro4.chr8             54960585 124 + 143986469 TGGGGCATATT---GTGATATTTTCCTCGGAAGTCTGCTTTA-------TTGATGATAAAA---TGGAACAGTGGA-CTAGAACATG--AAAAAAGATTGAATTCAAACTCTGACTT-ACGTGTGGTGGCCTTAGTGATTG
i panTro4.chr8             C 0 C 0
s nomLeu3.chr16            48090513 124 + 100215132 TGGCGCATATT---GTGATATTTTCCTCAGAAGTCTGCTTTA-------TTGATGATAAAA---TGGAACAGTGGA-CTAGAACATG--AAAAAAGATTGAATTCAAACTCTGACTT-ACGTGTGGTGGCCTTAGTGATTG
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61641380 124 + 150158102 TGGGGCATATT---GTGATGTTTTTCTAAAAAGTCTGCTTTA-------TTGATGATAAAA---TTGAACAGTGGA-CTAGAACATG--AAAAAAGATTGAATTCAAACTCTGTCTT-ACGCGGGATAGCCTTAGTGATTG
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58314296 124 + 146850525 TGGGGCATATT---GTGATGTTTTTCTAAAAAGTCTGCTTTA-------TTGATGATAAAA---TTGAACAGTGGA-CTAGAACATG--AAAAAAGATTGAATTCAAACTCTGTCTT-ACGCGGGATAGCCTTAGTGATTG
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53240307 122 + 139301422 TGGGGCATATT---GTGATGTTTTCCTCAAAAGTCTGCTTTA-------TTGATGATAAAA---TTGAACAGTGGA-CTAGAACACG--AAAAAAGATTGGATTCAAA--CTGTCTT-ACGTGGGGTAGCCTTAGTGATTG
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234      12897 119 +    110629 TGGGACGTATT---GTGATATTTTCCTCAGAAGT-TGCTTTA-------T---TGGTAAAA---TTGAACAGCAGA-CTAGAACATGA-AAAAAAGATTGAATTCAAA--CTGACTT-ACACAGGGTGGCCTTAGTGATTG
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2751559 123 +  10880647 TGGGATGTATT---GTGATGTCTTCCTCAGAAGT-TGCTTTA-------TTGATGATAAAA---TTGAACAGCAGA-CTAGAACATG--AAAAAAGATTGAATTCAGACTCTGACTT-ACACAGGGTGGCCTTAGTGATTG
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21554449 123 -  23169006 CAGGGAATATT---AAGATACTTTTCTCAGAAGTCTGCTTTA-------TTGATGATATAA---T-GAACAATAAA-CTAAAACACG--AGAAAAGATTAAATTAAAACTCAGAGTT-ACACTGGGTAGCCTgagtgattg
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4225385 129 -   9676502 TAGGAAGTAGTAAAGTGGTGTTTTCCTCAGAAGTCCATTTTA-------TTGGTGTTAAAAAATCGGCGCAGCGTA-GTAGGACAGG--AGAAAAGATCAAACTCGAGCTTTGGCTT-CCACAGGGTGGCCTTAGT-ATGG
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907         11150062 127 +  17242564 TGGGAAATATT-AAAAACCATGTTCCTCAGAATCCTCTTGTA-------TTGGT-ATCAAA---TTGAACAGCAGGCCTAGGGCATG--AGAGAAGATCAGCTTCCAACTCTGACTTCCCCCCAGGTGGCCTtagtggttc
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84383376 126 +  91571448 TGGGAAATAGT-AAAAAATGTTTTCCTCGAATGCCTCCTTTA-------ATGATGATAAAA---TTGAACAGCAGG-CGAGGACATG--AGAAAGGATGGAATTCAAACACTGGCGT-CCGTTGGGTGGCCTTGgtgattg
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782          7122025 133 -  14545593 TTGGAATTATT-AAAAAATATTTTCCTCAGATGCCTCCTTTATATCACCTTGATGATAAAA---TTGAACAGCAGG-CTAGGACATG--AGAAAAGATGAAATTCAAACTTTGACTT-CTATTGGGTGGCCTTGgtggttg
i cerSim1.JH767782         C 0 C 0
s pteAle1.KB030580         19647606 113 -  23789964 TGGGAGATATT-AAAAAAAATTTTGTTCAGACGCCTCCTTTA-------TTGATGATGAAA---TCAAGCGGCATG-CGATGCCTTG--AGAAAGGGTGG-ATTCAAACCCC-------------GTGGCCTTCACGATCG
i pteAle1.KB030580         C 0 N 0
s loxAfr3.scaffold_20      28050387 125 -  46401353 GAGGAAATATT-AAAAAATATTTTCCTTCGAGGCCTTCTTTA-------TTGATGGTAGAA---TTATACAGCAGG-CTACGACACT--AGAAAAGTTTGAATTCACACTCA-GCTT-CCATGGGGTGGCCTCagtgattg
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10399346 125 +  24341844 GAGGAAATATT-AAAAACTATTTTCCTCAGAAGCCTCCTTTA-------TTGATGGTAAAA---TTGGACAGCAGG-CTAGGACATT--GGAAAAGATTGAATTCACACTTG-ACTT-TCACGGGTTGGCCTCagtgattg
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436          1567943 127 -   2788317 GATGAAATTTT-TGAAAAC-TTTTGCTCAGAAGTCTCCCTTA-------TTGATGATAAAA---GTGAGTAATAGG-CTGGTACATTACAAAAAAAATCAAATTCAAATACATATTT-CCAGGGGGtggccttggtgattg
i dasNov3.JH567436         C 0 C 0
e ponAbe2.chr8             58997987 69631 + 153482349 I

a score=7513.000000
s hg38.chr8_KI270814v1_alt    19686 1 +    141812 A
s panTro4.chr8             54960709 1 + 143986469 A
i panTro4.chr8             C 0 C 0
s nomLeu3.chr16            48090637 1 + 100215132 G
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61641504 1 + 150158102 A
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58314420 1 + 146850525 A
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53240429 1 + 139301422 A
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234      13016 1 +    110629 A
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2751682 1 +  10880647 A
i saiBol1.JH378179         C 0 I 1
s otoGar3.GL873541         21554572 1 -  23169006 a
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4225514 1 -   9676502 G
i speTri2.JH393342         C 0 C 0
s orcOrc1.KB316907         11150189 1 +  17242564 a
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15            84383502 1 +  91571448 a
i equCab2.chr15            C 0 N 0
s cerSim1.JH767782          7122158 1 -  14545593 a
i cerSim1.JH767782         C 0 C 0
s loxAfr3.scaffold_20      28050512 1 -  46401353 a
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10399471 1 +  24341844 a
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436          1568070 1 -   2788317 a
i dasNov3.JH567436         C 0 C 0
e ponAbe2.chr8             58997987 69631 + 153482349 I

a score=11521.000000
s hg38.chr8_KI270814v1_alt    19687 2 +    141812 TT
s panTro4.chr8             54960710 2 + 143986469 TT
i panTro4.chr8             C 0 C 0
s nomLeu3.chr16            48090638 2 + 100215132 TT
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61641505 2 + 150158102 TT
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58314421 2 + 146850525 TT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53240430 2 + 139301422 TT
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234      13017 2 +    110629 TT
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2751684 2 +  10880647 TT
i saiBol1.JH378179         I 1 C 0
s otoGar3.GL873541         21554573 2 -  23169006 tc
i otoGar3.GL873541         C 0 C 0
s speTri2.JH393342          4225515 2 -   9676502 TC
i speTri2.JH393342         C 0 C 0
s loxAfr3.scaffold_20      28050513 2 -  46401353 tt
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629         10399472 2 +  24341844 tt
i triMan1.JH594629         C 0 N 0
s dasNov3.JH567436          1568071 2 -   2788317 tt
i dasNov3.JH567436         C 0 N 0
e cerSim1.JH767782          7122159 0 -  14545593 C
e orcOrc1.KB316907         11150190 0 +  17242564 C
e ponAbe2.chr8             58997987 69631 + 153482349 I

a score=5751.000000
s hg38.chr8_KI270814v1_alt    19689 3 +    141812 TTA--
s panTro4.chr8             54960712 3 + 143986469 TTA--
i panTro4.chr8             C 0 C 0
s nomLeu3.chr16            48090640 3 + 100215132 TTA--
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61641507 3 + 150158102 TTA--
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58314423 3 + 146850525 TTA--
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53240432 3 + 139301422 TTA--
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234      13019 3 +    110629 TTA--
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2751686 3 +  10880647 TTA--
i saiBol1.JH378179         C 0 C 0
s otoGar3.GL873541         21554575 3 -  23169006 tta--
i otoGar3.GL873541         C 0 N 0
s speTri2.JH393342          4225517 3 -   9676502 TTA--
i speTri2.JH393342         C 0 N 0
s orcOrc1.KB316907         11150190 3 +  17242564 ctg--
i orcOrc1.KB316907         C 0 I 2
s cerSim1.JH767782          7122159 3 -  14545593 gtg--
i cerSim1.JH767782         C 0 I 2
s loxAfr3.scaffold_20      28050515 3 -  46401353 --gga
i loxAfr3.scaffold_20      C 0 C 0
e ponAbe2.chr8             58997987 69631 + 153482349 I

a score=10505.000000
s hg38.chr8_KI270814v1_alt    19692 2 +    141812 TG
s panTro4.chr8             54960715 2 + 143986469 TG
i panTro4.chr8             C 0 C 0
s nomLeu3.chr16            48090643 2 + 100215132 TG
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61641510 2 + 150158102 TG
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58314426 2 + 146850525 TG
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53240435 2 + 139301422 TG
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234      13022 2 +    110629 TG
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2751689 2 +  10880647 TG
i saiBol1.JH378179         C 0 C 0
s orcOrc1.KB316907         11150195 2 +  17242564 tg
i orcOrc1.KB316907         I 2 C 0
s cerSim1.JH767782          7122164 2 -  14545593 tg
i cerSim1.JH767782         I 2 N 0
s loxAfr3.scaffold_20      28050518 2 -  46401353 tg
i loxAfr3.scaffold_20      C 0 N 0
e ponAbe2.chr8             58997987 69631 + 153482349 I

a score=33430.000000
s hg38.chr8_KI270814v1_alt    19694 14 +    141812 -CGATTAAGGGAAGA
s panTro4.chr8             54960717 14 + 143986469 -CGATTAAGGGAAGA
i panTro4.chr8             C 0 C 0
s nomLeu3.chr16            48090645 14 + 100215132 -CGATTAAGGGAAGA
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61641512 14 + 150158102 -CGATTAAGGGAAGA
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58314428 14 + 146850525 -CGATTAAGGGAAGA
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53240437 14 + 139301422 -CGATTAAGGAAAGA
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234      13024 14 +    110629 -AGATTAAGGGAAGC
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2751691 14 +  10880647 -AGATTAAGGGAAGC
i saiBol1.JH378179         C 0 C 0
s orcOrc1.KB316907         11150197 15 +  17242564 agtaataggggcaga
i orcOrc1.KB316907         C 0 N 0
e ponAbe2.chr8             58997987 69631 + 153482349 I

a score=257459.000000
s hg38.chr8_KI270814v1_alt    19708 130 +    141812 AACCTTGCTTAAGATGACTTTATGTCTC------AACTATCCTTAGT-ATTCCATGTTGACCCTAAATGTCAATTTATTT-ATCTTTTGGGAAACAGTGATAACTTTAGACACTTGGTTGCATGTGGTGTGTGTGCAT
s panTro4.chr8             54960731 130 + 143986469 AACCTTGCTTAAGATGACTTTATGTCTC------AACTATCCTTAGT-ATTCCATGTTGACCCTAAATGTCAATTTATTT-ATCTTTTGGGAAACAGTGATAACTTTAGACACTTGGTTGCATGTGGTGTGTGTGCAT
i panTro4.chr8             C 0 C 0
s nomLeu3.chr16            48090659 126 + 100215132 AGCCTTGCTTAAGATGACCTTATGTCTC------AACTATCCTTAGT-ATTCCATGTTGACCCTAAAAGTCAATTTATTT-ATCTTTTGGGAAACAGTGATAACTTTAGACACTTGGTTGCATGTGGTGTGCAT----
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61641526 124 + 150158102 AACCTTGCTTAAGATAAC--TATGTCTC------AACCATCCTTAGT-ATTCCATGTTGACCCTAAATATCAGTTTATTT-ATCTTTTGGGAAACAGTGATAACTTTAGACACTTGGTTGCACGTGGCGTGCAT----
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58314442 124 + 146850525 AACCTTGCTTAAGATAAC--TATGTCTC------AACCATCCTTAGT-ATTCCATGTTGACCCTAAATATCAGTTTATTT-ATCTTTTGGGAAACAGTGATAACTTTAGACACTTGGTTGCACGTGGCGTGCAT----
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53240451 124 + 139301422 AACCTTGCTTAAGATGAC--TATGTCTC------AACCATCCTTAGT-ATTCCATGTTGACCCTAAATATCAGTTTATTT-ATCTTTTGGGAAACAGTGATAACTTTAGACACTTGGTTGCATGTGGCCTGCAT----
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234      13038 132 +    110629 CACCTTGCTTAGGACGACTTTATGTCTCTATTAAAACTATCCTTAGTAATTCCACGTTGACACTAAATGTCAGTTTATTTGATCTTTTGGGGAACAGTGTTACCTTCAGACACTTGGT--CTCGTGGCGTGCAT----
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2751705 134 +  10880647 CACCTTGCTTAGGATGACTTTATGTCTCTATTAAAACTATCCTTAGTAATTCCACCTTGACCCTAAATGTCAGTTTATTTAATCTTTTGGGAAACGGTGATACCTTTAGACACTTGGTGGCATGTGGCATGCAT----
i saiBol1.JH378179         C 0 C 0
e ponAbe2.chr8             58997987 69631 + 153482349 I

a score=70990.000000
s hg38.chr8_KI270814v1_alt    19838 32 +    141812 CAGCAGCTGTGG---CAAACCCCGACCCTGCCCGC
s panTro4.chr8             54960861 32 + 143986469 CAGCAGCTGTGG---CAACCCCCGACCCTGCCCGC
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59067618 32 + 153482349 CAGCACCTGTGG---CAAATCCCGACCTTGCCCGC
i ponAbe2.chr8             I 69631 I 92985
s nomLeu3.chr16            48090785 16 + 100215132 ---CAGCC----------------ACCCTGCCCGC
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61641650 32 + 150158102 CAGCAGCTGTGG---CAACCCCCGACCCTGCCCGC
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58314566 32 + 146850525 CAGCAGCTGTGG---CAACCCCCGACCCTGCCCGC
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53240575 32 + 139301422 GAGCAGCTGTGG---CAACCCCCGACCCTGCCCGC
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234      13170 32 +    110629 CATCAGATGTGG---CAACCCCCGACCCTGGCCAC
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2751839 35 +  10880647 CAGCAGCTGTGGCAACAACCCCCGACCCTGCCCAC
i saiBol1.JH378179         C 0 C 0

a score=194485.000000
s hg38.chr8_KI270814v1_alt    19870 84 +    141812 CACCAGGAGCATGGACCCCTGGCCAGATGCTGCCGGGCACCTTATTCAGGAAGTCAGCCCAGCAGCTGTAGGAGGGCAGGAGCT
s panTro4.chr8             54960893 84 + 143986469 CACCAGGAGCATGGACCCCTGGCCAGATGCTGCCGGGCACCTTATTCAGGAAGTCAGCCCAGCAGCTGTAGGAGGGCGGGAGCT
i panTro4.chr8             C 0 C 0
s nomLeu3.chr16            48090801 84 + 100215132 CACCAGGGGCATGGACCCCTGGCCAGATGCTGCCGGACACCTTATTCAGGAGGTCAGCCCAGCAGCTGTAGGAGGGTGGGAGCT
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61641682 84 + 150158102 CACCAGGAGCATGGACCCCTGGCCAGATACTGCCGGACACCTTATTCAGGAGGTCAGCCTAGAAGCTGTAGGAGGGCGGGAGCC
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58314598 84 + 146850525 CACCAGGAGCATGGACCCCTGGCCAGATACTGCCGGACACCTTATTCAGGAGGTCAGCCTAGAAGCTGTAGGAGGGCGGGAGCC
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53240607 84 + 139301422 CACCAGGAGCATGAACCCCTGGCCAGATACTGCCGGACACCTTATTCAGGAGGTCAGCCTAGCAGCTGTAGGAGGGCGGGAGCC
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234      13202 84 +    110629 CATGAGGAGCATGGATCCCTGGACAGATGCTGCTGGACACCTCATTCAGGAGGTCAGCCCATCAGCTGCAGGAGGGCGGGAACC
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2751874 84 +  10880647 CAGGAGGGGCATGGACCCCTGGCCAGATGCTGCTGGACACCTCATTCAGGAGGTAAGCCCATCAGCTGCAGGAGGGCGGGAACC
i saiBol1.JH378179         C 0 C 0
e ponAbe2.chr8             59067650 92985 + 153482349 I

a score=119724.000000
s hg38.chr8_KI270814v1_alt    19954 38 +    141812 GGTGCTCAGCCCCATCCCAGTGGCTGCACAGTGCCCAG
s panTro4.chr8             54960977 38 + 143986469 GGTGCTCAGCCCCATCCCAGTGGCTGCACAGTGCCCAG
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59160635 38 + 153482349 GGTGCTCAGCCCCATCCCAGTGGCTGTACAGTGCCCAG
i ponAbe2.chr8             I 92985 I 1252
s nomLeu3.chr16            48090885 38 + 100215132 GGTGCTCAGCCCCATCCCAGTGGCTGCACAGTGCCCAG
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61641766 38 + 150158102 GGTGCTCAGCCCCATCCCAGTGGCTGCACGGTGCCCAG
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58314682 38 + 146850525 GGTGCTCAGCCCCATCCCAGTGGCTGCACGGTGCCCAG
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53240691 38 + 139301422 GGTGCTCAGCCCCATCCCAGTGGCTGCACAGTGCCCAG
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234      13286 38 +    110629 GGTACTCAGCCTCATCCCAGTGGCTGCAAAGTCCCCAG
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2751958 38 +  10880647 GGTGCTCAGCTTCCTCCCAGTGGCTGCACAGTCCCCAG
i saiBol1.JH378179         C 0 C 0

a score=143000.000000
s hg38.chr8_KI270814v1_alt    19992 72 +    141812 TGCCAGGATCCCTCGCTTTGGGCGCTTGTCCAGGAGGA-----AGAAGGGGGTGGTGCAGTCAAGCGGGCCCTGGGG
s panTro4.chr8             54961015 72 + 143986469 TGCCAGGATCCCTCGCTTTGGGCGCTTGTCCAGGAGGA-----AGAAGGGGGTGGTGCAGTCAAGCGGGCCCTGGGG
i panTro4.chr8             C 0 C 0
s nomLeu3.chr16            48090923 72 + 100215132 CGCCAGGATCCCTCGCTTTGGGCGCTTGTCCAGGAGCA-----AGAAGGGGGTGGTGCAGTCAAGCGGGCCCTGGGG
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61641804 72 + 150158102 CGCCAGGACCCCTCGCTTTGGGCACTTGTCCAGGAGGA-----AGAAGGGAGTGGTGCAGTCAAGCGGGCCCCCGGG
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58314720 72 + 146850525 CGCCAGGACCCCTCGCTTTGGGCACTTGTCCAGGAGGA-----AGAAGGGAGTGGTGCAGTCAAGCGGGCCCCCGGG
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53240729 72 + 139301422 CGCCAGGACCCCTTGCTTTGGGCACTTGTCCAGGAGGA-----AGAAGGGAGTGGTGCAGTCAAGCGGGCCCCGGGG
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234      13324 77 +    110629 TGCCAGGGCCCCTCGCTTTTGGCGCTGGTTGAGGAGAAGCAGCGGAAGGGGCTGGTGAAGTCAGGTCGGCCCTGGAG
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179          2751996 77 +  10880647 CGCCAGGGCCCTTCGCTTTTGGCGCTGGTTGAGGAGGAGCGGCGGAAGCAGGTGGTGAAGTGAGGTCGACCCTGGAT
i saiBol1.JH378179         C 0 C 0
e ponAbe2.chr8             59160673 1252 + 153482349 I

a score=294791.000000
s hg38.chr8_KI270814v1_alt        20064 266 +    141812 CAGGCCTGGCCCAGCGC-TCCGTTCTTGGG-AGCCCTGCCAGCCCACAGGCCCATCTGCGGCAG---------GCACGTGGTGCCGCGAGAACTTGGCTCAGGGACGGTTTTTCCGC---CATGCGCAGATTCTCGCCTCTCGC-G------------------------GGGGCGCCA-GGGGGCAGCTGGTTGAGGTGCGCA---------------TGCGCACTGGCACCTAACGGCTCTTCTTC------GAGTCTT----CTCAGAGGTTGGAGATTCCCTGTCT---TCTCCAACCTCTGCCAAGTCTTCAGAGAGGTTGGAGTGCGC
s panTro4.chr8                 54961087 256 + 143986469 CAGGCCTGGCCCAGTGC-TCCGTTCTTGGG-AGCCCCGCCAGCCCACAGGCCCATCTGCGGCAG---------GCACGTGGTGCCGCGAGAACGTGGCTCAGGGGCGGTTTTTCCGC---CATGCGCAGATTCTCGCCTCGCGC-G------------------------GGGGCG-----------GCTGGTTGAGGTGCGCA---------------TGCGCACTGGCACCTAACGGCTCTTCTTC------GAGTCTT----CTCAGAGGTTGGAGATTCCATGTCT---TCTCCAACCTCTGCCAAGTCTTCAGAGAGGTTGGAGTGCGC
i panTro4.chr8                 C 0 C 0
s nomLeu3.chr16                48090995 276 + 100215132 CAGGCCTGGCCCAGCGC-TCCGTTCTGGGG-AGCCCCGCCAGCCCACAGGCCCCTCTGCAGCGGCCGCCACCTGCACGTGGTGCCGCGAGAACATGGCTCAGGGGCGGTTTTTCCGC---CATGCGCAGATTCTCCCTTCGCGCGG------------------------GGGGCACCA-GGGGGCAGCTGGTTGAGGTGCGCA---------------TGCGCACTGGCACCTAACGGCTCTTCTTC------GGGTCTT----CTCAGAGGTTGGAGATGCCCTGTCT---TCTCCAGCCTCTGCCAAGTCTTCAGAGAGGTTGGAGTGCGC
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                 61641876 251 + 150158102 CAGGCCTGACCCAGAG-------TCTGGGT-AGCCCCGCTAGTCCACAGGCCGCTCTGCGGCAGCCGCCACCTGCACATGGTGCGGCGAGAAAGTGGCTCACTGGTGGGTTTCCCGC---CATGCGCAGATTCTCGCCTTGCAC-A------------------------GGGTCGCCA-GGCGGCCACTGGTTAAGGTAGTCA---------------TGCGCACTGGCACCTAAGGGCTCTGCTTTTTCTCAGAGTTTT----CTCAGAGGTTGGAGATGCCCTG---------------------------TCAGAGAGATTGGAGTGTGC
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                 58314792 257 + 146850525 CAGGCCTGACCCAGAGC-TGCGTTCTGGAT-AGCCCCGCCAGTCCACAGGCCGCTCTGCGGCAGCCGCCACCTGCACATGGTGCGGCGAGAAAGTGGCTCACTGGTGGGTTTCCCGC---CATGCGCAGATTCTCGCCTTGCAC-A------------------------GGGTCACCA-GGCGGCCACTGGTTAAGGTAGTCA---------------TGCGCACTGGCACCTAACGGCTCTGCTTTTTCTCAGAGTTTT----CTCAGAGGTTGGAGATGCCCTG---------------------------TCAGAGAGATTGGAGTGTGC
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                 53240801 251 + 139301422 GAGGCCTGATCCAGAGC-TGCGTTCTGGGT-AGCCCCGCCAGTCCACAGGCCGCTCTGCGGCAGCCGCCACCTGCACGTGGTGCGGCGAGAAAGTGGCCCAGGGGCGCTTTTTCCGC---CATGCGCAGATTCTCGCCTTGCAC-A------------------------GGGGCACCA-GGCGCCCGCTGGTTGAGGTAGTCA---------------TGCACACTGACACCTAACGGCTCTGCTTC------GAGTTTT----CTCAGAGGTTGGAGATGCCCTG---------------------------TCAGAGAGATTGGAGTGTGC
i chlSab2.chr8                 C 0 C 0
s calJac3.chrUn_GL286234          13401 211 +    110629 CAGGCCAGACCCAGTGA-TCCTCTCTGGGGAAGGCCCGCTAGCCCACAGGGCCCT------------------GCACGAGGTCCCTCTAGAAAGTGGCTCAGGGGCGGTTTTT-TGC---CAGGCGCAGATTCTTGCCTCCCCC-A------------------------TCAGCAGTG-GGCGGGCACTGGTTGAGGTGCGCA---------------TGTGTGCTGGTGCCTAACAGCTCTGCCCC-----GGAGTCTC----CTCAGAGGTTGGAGATTGT--------------------------------------------------
i calJac3.chrUn_GL286234       C 0 C 0
s saiBol1.JH378179              2752073 227 +  10880647 CAGGCCAGACCCAGTGA-TCCTCTCTGGGGGAGGCCAGCCCCCGCGCAGGGCCCT-------------------------GTCCTTCTAGAAAGTGGCTCGGGGGCGGTTCTT-CGC---CAGGCGCAGATGCTCACCTTCCCC-GAcagcagcgggcgcagcagcgggcacagcagcg-ggcgGGCGCCCGTTGAGGTGCACA---------------TGCTCACTGGTGCCTGGCAGCTCCGCCCC------GAGCCGC----CTCCGAGGTTGGAGTGTGC--------------------------------------------------
i saiBol1.JH378179             C 0 C 0
s sarHar1.chr5_GL861647_random   311971 243 -   4230514 CGAGCCGGCACATGCGCACTCATCCTTGGG------TGACTACCTTTGGGCCCATCCCC----------------------------------GTGACCC----GCGGCTCTTGCTCACGCGTGCGCAG-TTCAGTTCCCTCCC-G------------------------GCGTTGCCAGGGTTGCAGCCGGCTCTGGGTTTCGATTGGTTCTAACTGCTGCGCGCTCGCAGCT----------CCCC------GAACCTCTGGACTCTGGTGATTGAGATTTCCCCCTTTAATTCTGGAGCGGAGCCTAGGCCTCGGAGCGGGCCGAG-----
i sarHar1.chr5_GL861647_random N 0 C 0
e ponAbe2.chr8                 59160673 1252 + 153482349 I

a score=84285.000000
s hg38.chr8_KI270814v1_alt        20330 52 +    141812 CTGTCGGAGGTCGGGGCCAGCCCACCTTGC--TCtctgg-tgctgggctgggtgg
s panTro4.chr8                 54961343 52 + 143986469 CTGTCGGAGGTCGGGGCCAGCCCACCTTGC--TCTCTAG-TGCTGGGCTGGGTGG
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59161925 52 + 153482349 CTGTCTGAGGTCTGGGCCAGACTGCCTTGC--TTTCTGG-TGCTGGGCCGGATAG
i ponAbe2.chr8                 I 1252 T 92761
s nomLeu3.chr16                48091271 52 + 100215132 CTGTCTGAGGTCGGGGCCAGCCCACCTTGC--TCTCTGT-TGCTgggcttggtgg
i nomLeu3.chr16                C 0 I 11
s rheMac3.chr8                 61642127 53 + 150158102 CTGTCTGAGGTCGGGGCCAGCCCACCTTGC--TCTCTGGTTGCTGGGCCTGGTGG
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                 58315049 53 + 146850525 CTGTCTGAGGTCGGGGCCAGCCCACCTTGC--TCTCTGGCTGCTGGGCCTGGTAG
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                 53241052 51 + 139301422 CTGTCTGAGGTCGGGGCCAGCCCACCTTGC--TCTCTGG-TGCTGGGCCGTGT-G
i chlSab2.chr8                 C 0 C 0
s calJac3.chrUn_GL286234          13612 38 +    110629 TGA--AGAGGTTGG----AGTGCGCCTTCC--TTTCTGG-TGCTGTA--------
i calJac3.chrUn_GL286234       C 0 C 0
s saiBol1.JH378179              2752300 44 +  10880647 CTGTCTGCGGTCTGGGCCAGGGCGCCTTCC--TTTCTGG-CGCTGTA--------
i saiBol1.JH378179             C 0 C 0
s sarHar1.chr5_GL861647_random   312214 38 -   4230514 -------GGGCCAGGGAAGGACTCCCCCGCGGGTTCTTC-CGACGG---------
i sarHar1.chr5_GL861647_random C 0 C 0

a score=70216.000000
s hg38.chr8_KI270814v1_alt        20382 26 +    141812 ggtctgggtgggggttgggCAGGGGG
s panTro4.chr8                 54961395 26 + 143986469 GGTCTGAGTGGGGGTTGGGCAGGGGG
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59069216 26 + 153482349 GGTCAGGGTGGGGGCTGGGCGGGGGG
i ponAbe2.chr8                 T 92761 C 0
s nomLeu3.chr16                48091334 26 + 100215132 gggctgggtgggggttgggcaggggg
i nomLeu3.chr16                I 11 C 0
s rheMac3.chr8                 61642180 26 + 150158102 GGGCTGGGTGGGGGTTGGGCAGGGGG
i rheMac3.chr8                 C 0 I 46776
s macFas5.chr8                 58315102 26 + 146850525 GGGCTGGGTGGGGGTTGGGCAGGGGG
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                 53241103 26 + 139301422 GGGCCGGGTGGGGGTTGGGCAGGGGG
i chlSab2.chr8                 C 0 C 0
s calJac3.chrUn_GL286234          13650 23 +    110629 ---CTGGGTGGGGGCTTGGCAGAGGG
i calJac3.chrUn_GL286234       C 0 C 0
s saiBol1.JH378179              2752344 23 +  10880647 ---CTGGGTGGGGGCTTGGCAGAGGG
i saiBol1.JH378179             C 0 C 0
s sarHar1.chr5_GL861647_random   312252 26 -   4230514 CGCCGAAGTCTGCCTCCAGCATGAAG
i sarHar1.chr5_GL861647_random C 0 C 0

a score=222852.000000
s hg38.chr8_KI270814v1_alt        20408 101 +    141812 AAGGGCGAGGGCAAGTTGTGGCCTCTCTGAAGCTGGTAGCGGGGCC---AC---AAAGATAGTG------------GCTGTGGAGAGCCACAAGGG-CCAGGTGCCCTTGAGCAACTTGG
s panTro4.chr8                 54961421 101 + 143986469 AAGGGCGAGGGCAAGTTGTGGCCTCTCTGAAGCTGGTAGCGGGGCC---AC---AAAGATAGTG------------GCTGTGGAGAGCCACAAGGG-CCAGGTGCCCCTGAGCAACTTGG
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59069242 104 + 153482349 AAGGGCCAGGGCTAGTTGTGGCGTCTCTGAAGCCGATAGCCGGGCCTTGAA---GAAGATCTTA------------GCTGTGGAGAGCCAGAATGG-CCAGGTGCCCCTGAGCTCCTGGA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                48091360 101 + 100215132 aagggcgagggCAAGTTGTGGCCTCTCTGAAGCTGGTAGCGGGGCC---AC---AAAGATAGTG------------GCTGTGGAGAGCCACAGGGG-CCAGGTACCCCTGAGCAATTTGG
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                 61688982  97 + 150158102 AAGGGCGAGGGCGAGTTGTGGCGTCTCTGAAGCC-------GGGCC---ATGAAGAAGATCGTG------------GCTGTGGAGAGCCAGAAGGG-CCAGGTGTGCCTGAGCTCCTGGA
i rheMac3.chr8                 I 46776 C 0
s macFas5.chr8                 58315128 101 + 146850525 ACGGGCCAGGGCAAGTTGTGGCATCTCGGAAGCTGGTAGCGGGGCC---AC---AAAGATAGTG------------GCTGTGGAGAGCCAGAAGGG-CCAGGTGCCCCTGAGCAACTTGA
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                 53241129 101 + 139301422 ACGGGCCAGGGCAAGTTGTGGCGTCTCGGAAGCTGGTAGCGGGGCC---AC---AAAGATAGTG------------GCAGTGGAGAGCCAGAAGGG-CCGGGTGCCCCTGAGCAACTTGA
i chlSab2.chr8                 C 0 C 0
s calJac3.chrUn_GL286234          13673 100 +    110629 AAGGGCGAGGGTGAGTTGTGATGTCACTGAAGCTGGTAGT-GGGCC---AT---GAAGATCGTG------------GCTGTGGAAAGCCAGAAGGG-TCAGGTGCCCCTGCGCTCCTAAA
i calJac3.chrUn_GL286234       C 0 C 0
s saiBol1.JH378179              2752367 100 +  10880647 AAGGGCGAGGGTGAGTTGTGATGTCACTGAAGCTGGTAGT-GGGCC---AT---AAAGATCGTG------------GCTGTGGAAAGCCAGTAGGG-CCAGATGCCCCTGCGCTCCTAAA
i saiBol1.JH378179             C 0 C 0
s sarHar1.chr5_GL861647_random   312278 100 -   4230514 ------------AAGATTTTCAATTTCGGCagcaagaaa--ggtca---gt---ctccaTCTCGCTCCTTCGCCGTCCCGCGGAGGGACTGCGGGGTCCCGGAGTCCGACACCAGCGCGG
i sarHar1.chr5_GL861647_random C 0 C 0

a score=39220.000000
s hg38.chr8_KI270814v1_alt        20509 24 +    141812 GTAACCATATCTTTACTGAC--GTCA
s panTro4.chr8                 54961522 24 + 143986469 GTAACTGTATCTTTACTGAC--GTCT
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59069346 24 + 153482349 ATAACCGCATATTCTCTGAC--CTCA
i ponAbe2.chr8                 C 0 T 71126
s nomLeu3.chr16                48091461 24 + 100215132 GTAACTATATCTTTACTGAC--GTCT
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                 61689079 24 + 150158102 GTAACCACATCTTCTCTGAC--CCCT
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                 58315229 26 + 146850525 GTAACTGTATCTTTACTGACGGGTCT
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                 53241230 24 + 139301422 GTAACTGTATCTTTACTGAC--GCCT
i chlSab2.chr8                 C 0 C 0
s calJac3.chrUn_GL286234          13773 24 +    110629 GTAACCGTATCTTCATTGAC--CTCT
i calJac3.chrUn_GL286234       C 0 C 0
s saiBol1.JH378179              2752467 24 +  10880647 GTAACCGTATCTTCACTGAC--CTCT
i saiBol1.JH378179             C 0 C 0
s sarHar1.chr5_GL861647_random   312378 11 -   4230514 GATACCTCCTC---------------
i sarHar1.chr5_GL861647_random C 0 I 1
s fr3.chr9                      3740753 21 -  13922460 GCGGCAGTGTCCTTTCTGGA--G---
i fr3.chr9                     N 0 C 0
s takFla1.KE120500               510495 21 +    663757 GCGGCAGTGTCCTTTCTGGA--G---
i takFla1.KE120500             N 0 C 0

a score=30031.000000
s hg38.chr8_KI270814v1_alt        20533 13 +    141812 GGTACTAGACCCC
s panTro4.chr8                 54961546 13 + 143986469 GGTACTAGACCCC
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 58998244 13 + 153482349 GGTACTAGACCCC
i ponAbe2.chr8                 T 71126 C 0
s nomLeu3.chr16                48091485 13 + 100215132 GGTACTAGACCCC
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                 61689103 13 + 150158102 GGTACCAGACCCC
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                 58315255 13 + 146850525 GGTACCAGGCCCC
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                 53241254 13 + 139301422 GGTACCAGGCCCC
i chlSab2.chr8                 C 0 C 0
s calJac3.chrUn_GL286234          13797 13 +    110629 GGTTCCAGACCCC
i calJac3.chrUn_GL286234       C 0 C 0
s saiBol1.JH378179              2752491 13 +  10880647 GGTTCCAGACCCC
i saiBol1.JH378179             C 0 C 0
s sarHar1.chr5_GL861647_random   312390  1 -   4230514 G------------
i sarHar1.chr5_GL861647_random I 1 C 0
s fr3.chr9                      3740774 13 -  13922460 GATACGAGCTAAA
i fr3.chr9                     C 0 C 0
s takFla1.KE120500               510516 13 +    663757 GATACGAGCTAAA
i takFla1.KE120500             C 0 C 0

a score=23192.000000
s hg38.chr8_KI270814v1_alt         20546 5 +    141812 AGATG
s panTro4.chr8                  54961559 5 + 143986469 AGATG
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  58998257 5 + 153482349 AGATG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48091498 5 + 100215132 AGATG
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                  61689116 5 + 150158102 AGATG
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58315268 5 + 146850525 AGATG
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53241267 5 + 139301422 AGATG
i chlSab2.chr8                 C 0 C 0
s calJac3.chrUn_GL286234           13810 5 +    110629 AGAGG
i calJac3.chrUn_GL286234       C 0 C 0
s saiBol1.JH378179               2752504 5 +  10880647 AGAGG
i saiBol1.JH378179             C 0 C 0
s monDom5.chr8                 138054747 5 - 312544902 AGATA
i monDom5.chr8                 N 0 C 0
s sarHar1.chr5_GL861647_random    312391 5 -   4230514 GGACA
i sarHar1.chr5_GL861647_random C 0 C 0
s fr3.chr9                       3740787 5 -  13922460 AGACA
i fr3.chr9                     C 0 C 0
s takFla1.KE120500                510529 5 +    663757 AGACA
i takFla1.KE120500             C 0 C 0

a score=373104.000000
s hg38.chr8_KI270814v1_alt         20551 113 +    141812 AGGATCTCAGGAAGATCCAC-AAAGCTGCGTCCAGGGGAACGAACGTGTGGAAGCTGCAGCGGAGCCTCCTGCTCAAGAG--------TAAAGGACCGGTCTGA----AACCTACAAGAACAGGTG
s panTro4.chr8                  54961564 113 + 143986469 AGGATCTCGGGAAGATCCAC-AAAGCTGCGTCCAGGGGAGCGAACCTGTGGAAGCTGCAGCGGAGCCTCCTGCTCAAGAG--------TAAAGGACCGGTCTGA----AACCTCCAAGAACAGGTG
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  58998262 112 + 153482349 AGGATCTCGGGAAGATCCAC-AAAGCTGCGTCCAGGGGAACGAACGTGTGGAAGCTGCAGCGGAGCCTCCTGCTCAAGAG--------TAAAGGACCGGTCTG-----AACCTACAAGAACAGGTG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48091503 113 + 100215132 AGGATCTCGGGAAGATCCAC-AAAGCTGCGTCCAGGGGAACGAACGTGTGGAAGCTGCAGCGGAGCCTCCTGCTCAAGAG--------TAAAGGACCGGTCTGA----AACCTACAAGAACAGGTG
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                  61689121 108 + 150158102 AGGATGTTGGGATGATCTAC-AAAGCTGCGTCCAGGGAAAC----GCGTGGAAGCTGCAGCGGAGCTTCCTGCTCAAGAG---------AAAAGACCAGTCTGA----AACCTGCAAGAACAGATG
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58315273 113 + 146850525 AGGATCTCGGGAGGATCCAC-AAAGCTGCGTCCAAGGGAACGAATGTGTGGAAGCTGCAGCGGAGCCTCCTGCTCAAGAG--------TAAAGGACCCGTCTGA----AACCTACAAAAACAGGTG
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53241272 108 + 139301422 AGGTTCTCGGGAGGATCCAC-AAAGCTGCGTCCAGGGGAACGAATGTGTGGAAGCTGCAGCGGAGCCTTCTGCCCAAGAG--------TAAAGGACCCGTCTGA----AACCTACAAGAAC-----
i chlSab2.chr8                 C 0 C 0
s calJac3.chrUn_GL286234           13815 109 +    110629 AGAATGTCGGGAGGATCCATAAAAGCTGTGTCCAGTGGAATGA----GTGGAAGCTGCAGCGGCGCCTCCAGCTCAAGAG---------ACAGGACCTGTCTGA----AACCTACAAGAACAGGTG
i calJac3.chrUn_GL286234       C 0 C 0
s saiBol1.JH378179               2752509 109 +  10880647 AGAATGTCGGTAGGATCCATAAAAGCTGTGTCCAGGGGAATGA----GTGGAAGCTGCAGCGGAGCCTCCAGCTCGAGAG---------AAAGGACCTGTATGA----AACCTACAAGAACAGGTG
i saiBol1.JH378179             C 0 C 0
s monDom5.chr8                 138054752 122 - 312544902 AGGATATGGGGAGGATCCAC-AGAGCAGCTTCTATAGG---AAATGAAGCAAAGGTGGAGGAGCTGCTCCTGCAAAAAAAGTATGAGATCGACGAACCTGATAAAATGAACCGGTAAGAGAAGGAG
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    312396 122 -   4230514 AGGAGCTCGGGAAGCTCCAC-AAAGCCGCCTCGGTCGG---GGATGTGGCGAAGGTGCAGCAGCTGCTGCTGCTCGGGAAGCACGACGTGAACGATTTGGATAAAGTGAAGCGGTAAGAGCAGGAG
i sarHar1.chr5_GL861647_random C 0 C 0
s macEug2.GL108065                 80354 120 -    187545 AGGAGCTCGGGAAGATCCAC-AAAGCTGCCGCGATCGG---GGACGTGGCGAAGGTGCAGCAGCTGCTGCTGCTCGGCCTGGCAAGCGTGGATGACCTGGATAAGGAGAACCGGTGAGAG--GGCG
i macEug2.GL108065             N 0 C 0
s fr3.chr9                       3740792 106 -  13922460 AGGATCTTGGAAAAGTTCAC-AAAGCTGCTGCGGGTGG---TGATGTGGGAAAGTTGAAGGAA-----CTTGCTGAAAAA-CATGATATCAATCAACTGGACAA----A------GAGAACAGGTG
i fr3.chr9                     C 0 I 144
s takFla1.KE120500                510534 106 +    663757 AGGATCTTGGAAAAGTTCAC-AAAGCTGCTGCGGGTGG---TGATGTGGGAAAGTTGAAGGAA-----CTTGCTGAAAAA-CATGATATCAATCAACTGGACAA----A------GAGAACAGGTG
i takFla1.KE120500             C 0 I 77

a score=-7872.000000
s hg38.chr8_KI270814v1_alt         20664  7 +    141812 -------TCGG--------------GGG
s panTro4.chr8                  54961677 21 + 143986469 -------TCGGgggctgggggctgcggg
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  58998374  7 + 153482349 -------TCGG--------------GGG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48091616  4 + 100215132 -------TGGG-----------------
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                  61689229  7 + 150158102 -------TCAG--------------GAA
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58315386  7 + 146850525 -------TCGG--------------GAA
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53241380  4 + 139301422 ----------G--------------GAA
i chlSab2.chr8                 C 0 C 0
s calJac3.chrUn_GL286234           13924 11 +    110629 ---GGAAATGG--------------GGG
i calJac3.chrUn_GL286234       C 0 C 0
s saiBol1.JH378179               2752618 14 +  10880647 TCTGGAAATGG--------------GGG
i saiBol1.JH378179             C 0 C 0
s monDom5.chr8                 138054874  7 - 312544902 -------ATTG--------------GGG
i monDom5.chr8                 C 0 N 0
s sarHar1.chr5_GL861647_random    312518  7 -   4230514 -------ttgg--------------ggg
i sarHar1.chr5_GL861647_random C 0 C 0
s macEug2.GL108065                 80474  7 -    187545 -------GCGG--------------GGG
i macEug2.GL108065             C 0 C 0
e takFla1.KE120500                510640 77 +    663757 I
e fr3.chr9                       3740898 144 -  13922460 I

a score=113886.000000
s hg38.chr8_KI270814v1_alt        20671 46 +    141812 CTGCAGGCTGCGGGCTGCG---------------------GGAGGAGGTGGGCGGGTGGGGAGAAGC
s panTro4.chr8                 54961698 46 + 143986469 ctgcgggctgcgggctgcg---------------------ggAGGAGGTGGGCGGTTGGGGAGAAGC
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 58998381 46 + 153482349 CTGCGGGCTGCGGGCTGCG---------------------GGAGGAGGTGGGCGGGTGGGGAGAAGC
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                48091620 42 + 100215132 ----GGGCTGCGGGCTGCG---------------------GGAGGAGGTGGGCAGGCGGGGAGAAGC
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                 61689236 46 + 150158102 CTGCGGGCTGGGGACTGAG---------------------GGAGGAGGCGGGCGGGTGGGGAGAAGC
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                 58315393 67 + 146850525 ctgcgggctgcgggctgcgggctgcgggctgtgggctgcCGGAGGAGGTGCGCGGGTGGGGAGAAGC
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                 53241384 46 + 139301422 CTGCAGGCTGCGGGCTGCG---------------------GGAGGAGGTGCGCGGGTGGGGAGAAGC
i chlSab2.chr8                 C 0 C 0
s calJac3.chrUn_GL286234          13935 46 +    110629 CTGAGGGCTGGGGGATGCG---------------------GGAGAAGGTGAGCAGGTGGGGAGAAGC
i calJac3.chrUn_GL286234       C 0 C 0
s saiBol1.JH378179              2752632 46 +  10880647 CTGAGGGCTGGGGGATGCG---------------------GGAGAAGGTGAGCGGGTGGGGAGAAGC
i saiBol1.JH378179             C 0 C 0
s sarHar1.chr5_GL861647_random   312525 34 -   4230514 -------atgggg-----g---------------------agagaaggTAAGGCCCCGTGGAGGAGC
i sarHar1.chr5_GL861647_random C 0 I 5503
s macEug2.GL108065                80481 15 -    187545 -------A----------G---------------------AGAGAAGGGAAGC--------------
i macEug2.GL108065             C 0 C 0
e takFla1.KE120500               510640 77 +    663757 I
e fr3.chr9                      3740898 144 -  13922460 I

a score=56034.000000
s hg38.chr8_KI270814v1_alt        20717 26 +    141812 --ACCCCCTTCAGAGTT-GGGGCTTGGGG
s panTro4.chr8                 54961744 22 + 143986469 --ACCCCCTTCAGAGTT-GGGGCTT----
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 58998427 27 + 153482349 --ACCCCCTTCAGAGTTGGGGGCTTGGGG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                48091662 27 + 100215132 --ACCCCCTTCAGAGTTGGGGGCTTGGGG
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                 61689282 27 + 150158102 --ACCTCCTTCAGAGTTGGGGGCTTGAAG
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                 58315460 27 + 146850525 --ACTCCCTTCAGAGTTGGGGGCTTGGGG
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                 53241430 27 + 139301422 --ACTCCCTTCAGAGTTGGGGGCTTGGGG
i chlSab2.chr8                 C 0 C 0
s calJac3.chrUn_GL286234          13981 22 +    110629 --ACCCCCTTTAGAGTT-GGGGAAT----
i calJac3.chrUn_GL286234       C 0 C 0
s saiBol1.JH378179              2752678 23 +  10880647 --ACCCCCTTCAGAGTTGGGGGAAT----
i saiBol1.JH378179             C 0 C 0
s macEug2.GL108065                80496 26 -    187545 CCCCTCCCCCCAGGG---GCAGCCTAAGG
i macEug2.GL108065             C 0 I 2890
e takFla1.KE120500               510640 77 +    663757 I
e fr3.chr9                      3740898 144 -  13922460 I
e sarHar1.chr5_GL861647_random   312559 5503 -   4230514 I

a score=161809.000000
s hg38.chr8_KI270814v1_alt        20743 73 +    141812 AGTGGGGGCGAGGGGAGGCATGGAAAGAAT-GGGTGTGCGGAGCGGGCCGTTCTGGTGCCCAGGGTGCTGGGCT
s panTro4.chr8                 54961766 69 + 143986469 ----GGGGCGAGGGGAGGCATGGAAAGAAT-GGGTGTGCGGAGCGGGCCGTTCTGGTGCCCAGGGTGCTGGGCT
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 58998454 73 + 153482349 AGTGGGGGCAAGGGGAGGCATGGAAAGAAT-GGGTGTGCAGAGCGGGCTGTTCTGGTGCCCAGGGCGCTGAGCT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                48091689 73 + 100215132 AGTGGGGGCGAGGGGAGGCATGGAAAGAAT-GGGTGTGCGGGGCGGGCCGTTCTGGTGCCCAGGGCGCTGGGCT
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                 61689309 74 + 150158102 ATTGGGGGCCAGGGGAGGCGTGGAAAGGATGGGGTGTGCGGGGCGGGCGGTCCTAGTCCCCAGGGCTCTTGGCT
i rheMac3.chr8                 C 0 T 46860
s macFas5.chr8                 58315487 73 + 146850525 AGTGGGGGCGAGGGGAGGCATGGAAAGAAT-GGGTGTGCGGGGCGGGCCGTCCTGGGGCCCAGGACGCTGGGCG
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                 53241457 73 + 139301422 AGTGGGGGCGAGGGGATGCATGGAAAGAAT-GGGTGTGCGGGGCGGGCCGTCCTGGTGCCGAGGATGCTGGGCG
i chlSab2.chr8                 C 0 C 0
s calJac3.chrUn_GL286234          14003 59 +    110629 ----GGGGCAAAGGGAGGAGTGGAA--AGTGGGGTGTGCGGGGTGGGCTGTCCTGATCCCCAGGG---------
i calJac3.chrUn_GL286234       C 0 C 0
s saiBol1.JH378179              2752701 61 +  10880647 ----GGGGCAAAGGGAGGAGTGGAAAGAGTGGGGTGTGCCGGGCGGGCTGTCCTGATCTCCAGGG---------
i saiBol1.JH378179             C 0 C 0
e takFla1.KE120500               510640 77 +    663757 I
e fr3.chr9                      3740898 144 -  13922460 I
e macEug2.GL108065                80522 2890 -    187545 I
e sarHar1.chr5_GL861647_random   312559 5503 -   4230514 I

a score=398275.000000
s hg38.chr8_KI270814v1_alt        20816 146 +    141812 TTCTTCCCGGACGGGCTCCGCAGCGCCTGAGATGTGGACGCCTTGGAGGCGGAGGGCCCGGGCCATCCTTATGAGCAGCAAAATAAACCCAAAACTTTAGCTGGTTTCTGACTCACCCACAGTTCCTCTTACAGAGCACTTCAGAG
s panTro4.chr8                 54961835 146 + 143986469 TTCTTCCCGGACGGGCTCCGCAGCGCCTGGGATGTGGACGCCTTGGAGGCGGAGGGCCCAGGCCATCGTTATGAGCAGCAAAATAAACCCAAAACTTTAGCTGGTTTCTGACTCACCCACAGTTCCTCTTACAGAGCACTTCAGAG
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 58998527 146 + 153482349 TTCTTCCCGGACGGGCTCCGCAGCGCCTGGGATGTGGACACCTTGGAGGCGGGGGGCCCCGGCCATCTTTATGAACAGCAAAATAAACCCAAAAATTTAGCTGGTTTCTGACTCACCCACAGTGCCTCTTACAGAGCACTTCAGAG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                48091762 146 + 100215132 TTCTTCCCGGACGGGCTCCGCAGCGCCTGGGATGTGGACGCCTTGGAGGCGGAGGGTCCAGGCCATCTTTATGAGCAGCAAAACAAACCCAAAACTTTAGCTGGTTTCTGACTCACCCACAGTTTCTCTTACAGAGCACTTCAGAG
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                 61642523 146 + 150158102 TTCTTCCCGGACGGGCTCCGCAGCGCCTGGGATGTGGACGCCTTGGAGGTGGAGTGCCCAGGCCATCTTTACGAGCAGCAAAATAAACCCAAAACTTTAGCTGGTTTCTGACTCACTCACAGTTCCTCTTACAGAGCACTTTAGAG
i rheMac3.chr8                 T 46860 C 0
s macFas5.chr8                 58315560 146 + 146850525 TTCTTCCCGGACGGGCTCCGCAGCGCCTGGGATGTGGACGCCTTGGAGGTGGAGTGCCCAGGCCATCTTTACGAGCAGCAAAATAAACCCAAAACTTTAGCTGGTTTCTGACTCACTCACAGTTCCTCTTACAGAGCACTTTAGAG
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                 53241530 146 + 139301422 TTTTTCCCAGACGGGCTGCGCAGTGCCTGGGATGTGGACGCTTTGGAGGTGGAGTGCCCAGGCCATCTTTACGAGCAGCAAAATAAACCCAAAACTTTAGCTGGTTTCTGACTCACTCACAGTTCCTCTTACAGAGCACTTTAGAG
i chlSab2.chr8                 C 0 C 0
s calJac3.chrUn_GL286234          14062 139 +    110629 --CTTCCCTGGCAGACTCCTCAGCACCAGTGACGTAGACACCTTGGAGGTGGAGGATCCAGGCCATCTTGATGAGCAGCAACAGAAACCCAACACTTTAGCTGGTTTTGGACTCACTTATAGTTCCTCTCACAGAGCACTT-----
i calJac3.chrUn_GL286234       C 0 C 0
s saiBol1.JH378179              2752762 139 +  10880647 --CTTGCCTGGCAGACTCCTCGGCACCAGTGACTCAGACACCTTGGAGGTGGACGGCCCAGGCCATCTTGATGAGCAGCAAAAGAAACCCAACACTTTAGCTGGTTTTGGACTCACTTATAGTTCCTCTTACAGAGCATTT-----
i saiBol1.JH378179             C 0 C 0
e takFla1.KE120500               510640  77 +    663757 I
e fr3.chr9                      3740898 144 -  13922460 I
e macEug2.GL108065                80522 2890 -    187545 I
e sarHar1.chr5_GL861647_random   312559 5503 -   4230514 I

a score=612776.000000
s hg38.chr8_KI270814v1_alt        20962 242 +    141812 ACAATTTTAAAGTGATTTAATTAATAA----AAGTATGTACAGT-GTTTTATTTTTTATGTATACAGTTT---AAAAT------------ATAATGTTAGATACATTATAGAAAGAAGCATAATGAAAGAAATAATTTCCATAATA--TATCGCCTTCTGGGCTAAGAACATTTTGGGTAAAATCCAATA---TTTTATATCAATGAATTCTTATGTAAATATGTTCTTTGCGGAGGGACCTTAGAAGGAAACTTTGAAGTGGGAAG
s panTro4.chr8                 54961981 242 + 143986469 ACAATTTTAAAGTGATTTAGTTAATAA----AAGTATGTACAGT-GTTTTATTTTTGATGTATACAGTTT---AAAAT------------ATAATGTTAGATACATTATAGAAAGAAGCATAATGAAAGAAATAATTTCCATAATA--TATCGCCTTCTGGGCTAAGAACATTTTGGGTAAAATCCAATA---TTTTATATCAATGAATTCTTATGTAAATATGTTCTTTGCTGAGGGACCTTAGTAGGAAACTTTGAAGTGTGAAG
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 58998673 242 + 153482349 AGAATTTTAAAGTGATTTAATTAATAA----AACTATGTGCAGT-GTTTTATTTTTGATGTATACAGTTT---AAAAT------------ATAATGTTAGATACATTATAGAAAGAAACATAATGAAAGAAATAATTTCCATAATA--TATAGCCTTCTGGGCTAAGAACATTTTGGGTAAAATCCAATA---TTTTGTATCAATGAATTCTTATGTAAATATGTTCTTTGCTGAGGGACCTTAGAAGGAAACTTTGaaatgggaag
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                48091908 239 + 100215132 AGAATTTTAAAGTGATTTAATTAATAA----AAGTATGTACAGT-GTTTTATTTTTGATGTATACAGTTT---AAAAT------------ATAATGTTAGATACATTATAGAAAG---CGTAATGAAAGAAATAATTTCCATAATA--TATCGCCTTCTGGGCTAAGAACATTTTGGGTAAAATCCAATA---TTTTATATCAATGAATTCCTATGTAAACATGTTCTTTGCTGAGGAACCTTAGAAGGAAACTTTGAAGTGGGAAG
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                 61642669 247 + 150158102 AGAATTTTAAAGTGATTTAATTATCAAAATTAAGTATGTACAGT-GTTTTGTTTTTGAAGTATAGGGTTTAAAAAAAT------------ATG--GTTAGATACATTATAGAAAGAAGCATAATGAAAGAAATACTTCCCATAATA--TATCGCTTTCTGGGCTAAGAATATTTTGGGTAAAATCCAATA---TTTTATATCAATGAATTCCCATGTAAATATGTTCTTTGCAGAGGGACCTTAGAAGGAAACTTTGAAGTGGGAAG
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                 58315706 244 + 146850525 AGAATTTTAAAGTGATTTAATTATCAAAATTAAGTATGTACAGT-GTTTTATTTTTGACGTATACGGTTT---AAAAT------------ATG--GTTAGATACATTATAGAAAGAAGCATAATGAAAGAAATACTTCCCATAATA--TATCGCTTTCTAGGCTAAGAATATTTTGGGTAAAATCCAATA---TTTTATATCAATGAATTCCCATGTAAATATGTTCTTTGCAGAGGGACCTTAGAAGGAAACTTTGAAGTGGGAAG
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                 53241676 243 + 139301422 GGAGTTTTAAAGTGATTTAATTATCAAAATTAAGTATGTACAGT-GTTTTATTTTTGATGTATACAGTTT---AAAAT------------AT---GTTAGATATATTATAGAAAGAAGCATAATGAAATAAATACTTTCCATAATA--TATCGCCTTCTGGACTAAGAATATTTTGGGTAAAATCCAATA---TTTTATATCAGTGAATTCCCATGTAAATATGTTCTTTGCAGAGGGACCTTAGAAGGCAACTTGGAAGTGGGAAG
i chlSab2.chr8                 C 0 C 0
s calJac3.chrUn_GL286234          14201 237 +    110629 AGAATTTTAAAGTGATTTAATTAGCAAAATTAACTTTATACAGTAGTTTTATTTT-----TACACATTTT---AAAAC------------ATAATGTTAGATACATTATAGAAAGAAGCATAATGAAAGAAATAGTTTCCATAAT-------GCCTTCTGGGCTAAGAATATTTTGACTAAAATCCAGTA---TTTTATATCAATGAATGCCTATGTAAATATGTTCTTTGCTGAGGGACCTTAGAAATAAGCTTTGAAGTGGGAAG
i calJac3.chrUn_GL286234       C 0 C 0
s saiBol1.JH378179              2752901 223 +  10880647 AGAATTTTAAAGTGATTTAATTAGCAAAATTAACTTTATACAGTAGTTTTATTTTTAATATACAGATTTT---AA-----------------AATGTTAGATAC------------AGCATAATGAAAAAA--AATTTCCATAAC-------CCCTTCTTGGCTAAGAATATTTTGACTAAAATCCAGTA---TTTTATATCAATGAATGCCTATGTAAATATGTTCTTTGCTGAGGGACCTTAGAAGTAAGCTTTGAAGTGGGAAG
i saiBol1.JH378179             C 0 C 0
s taeGut2.chr1A                23686307 246 +  73657157 ATAATTTCCAAGTAGTTTAATAAAGAG----AAGGAAGACAAAG-GTCTTATTTTGCATTTTTCTCAACT---AAAATGAACCAAAACTAACAAATCCAATTGCGACCTACTTGACTCCATAATAATAGAGTTCATTTCCATGATAACTCTAGATTGGTAGCCCAGAAA--------GTATGAGCCAGTGAATTTGTGTGGTTCTGAAT----ATATGAGTAAGCTTCTT-CCgaatcatagtatcagaagattctgagttggaagg
i taeGut2.chr1A                N 0 I 5559
e takFla1.KE120500               510640  77 +    663757 I
e fr3.chr9                      3740898 144 -  13922460 I
e macEug2.GL108065                80522 2890 -    187545 I
e sarHar1.chr5_GL861647_random   312559 5503 -   4230514 I

a score=462993.000000
s hg38.chr8_KI270814v1_alt        21204 193 +    141812 ATTGTTTATGTTCTCGAATAAGACGACTCATTTTTCTCAAGGTGTGAGTTCTCTATCAATTTTACATAAATAAATTTATCAAAGTTAACATT-TTTGAAATACACATG----CTTTTAGTATTGTGGTAGCATTAAGAAAATTTTTGTaatggagttaaaattttagtt------ttctatatatcaaaatatgctatcaattt
s panTro4.chr8                 54962223 193 + 143986469 ATTGTTCATGTTCTCGAATAAGACGACTCATTTTTCTCAAGGTGTGAGTTCTCTATCAATTTTACATAAATAAACTTATCAAAGTTAACATT-TTTGAAATACACATG----CTTTTAGTATTGTGGTAGCATTAAGAACATTTTTGTAATGGAGTTAAAATTTTAGTT------TTCTGTatatcaaaatatgctatcaattt
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 58998915 193 + 153482349 attgttcatgttctcgaataagatgactcatttttctcaaggtgtgagttctCTATCAATTTTACATAAATAAACTTATCAAAGTTAACATT-TTTGAAATACGCATG----CTTTTAGTATTGTGGTAGCATTAAGAAAATTTTTGTAATGGAGTTAAAATTTTAGTC------TTCTATATATCAAAATATGCTATCAATTT
i ponAbe2.chr8                 C 0 I 4519
s nomLeu3.chr16                48092147 193 + 100215132 ATTGCTCATGTTCTTGAATAAGACGACTCATTTTTCTCAAGGTGTGAGTTCTCTATCAATTTTACATAAATAAAGTTATCAAAGTTAACATT-TTTGAAATACACATG----CTTTTAGTATTGTGATAGCATTAAGAAAATTTTTGTAATGGAGTTAAAATTttagtc------ttctatatatcaaaatatgctatcaattt
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                 61642916 184 + 150158102 ATGGTTCATGTTCTTGAATAAGACGACTCGGTT---------------TTCTCTATCCATTTTACATACATAAAGTTATCAAAGTTAACATT-TTTGAAATACACATG----CTTTTAGTATTGTGATAACATTAAGAAAATTTTTGTAATGGAGTTAAAATTTTAGTcttgcctttctacatatcaaaagatgctatcaattt
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                 58315950 184 + 146850525 ATGGTTCATGTTCTTGAATAAGACGACTCGGTT---------------TTCTCTATCCATTTTACATACATAAAGTTATCAAAGTTAACATT-TTTGAAATACACATG----CTTTTAGTATTGTGATAACATTAAGAAAATTTTTGTAATGGAGTTAAAATTTTAGTCTTGCCTTTCTACATATCAAAAGATGCTATCAATTT
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                 53241919 184 + 139301422 ATGGTTCATGTTCTTGAATAAGACGACTCAGTT---------------TTCTCTCTCAATTTTACATACATAAAGTTATCAAAGTTAACATT-TTTGAAATACACATG----CTTGTAGTATTGTGATAGCATTAAGAAAATTTTTGTAATGGAGTTAAAATTTTAGTCTTGCCTTTCTACATATCAAAAGATGCTATCAATTT
i chlSab2.chr8                 C 0 C 0
s calJac3.chrUn_GL286234          14438 192 +    110629 ATGGTTTATGTTCTTGAATAAGACAACTCATTTTTCTGAAGGTGTGAGCTCTTTATCAATTTTACATAA--------ATCATAGTTAACATTATTTGAAATACACATGCTGTCTTTTAATATTGTGTTAGCATTAAGAACATTATTGTaatggagttagaa----agtcttgcctgtctagatctgaaaatatgctattaattt
i calJac3.chrUn_GL286234       C 0 C 0
s saiBol1.JH378179              2753124 184 +  10880647 ATGGTTTATGTTCTTGAAAAAGACAACTCATTTTTCTGAAGGTTTGAGCTCTTTGTCAGTTTTACATAA--------ATCAAAGTTAACATTATTTGAAATACACATGCTGTCTTTTAGTATTGTGATAGCATTaagaacat--------tggagttagaa----agtcttgcctttctagatctgaaaatatgctattaattt
i saiBol1.JH378179             C 0 C 0
e takFla1.KE120500               510640  77 +    663757 I
e fr3.chr9                      3740898 144 -  13922460 I
e macEug2.GL108065                80522 2890 -    187545 I
e sarHar1.chr5_GL861647_random   312559 5503 -   4230514 I
e taeGut2.chr1A                23686553 5559 +  73657157 I

a score=551608.000000
s hg38.chr8_KI270814v1_alt        21397 200 +    141812 tcactaatagtttgctaccagctgaaaagacaggtaaatgaatgcaggagaatagaaaatccagaaacacccaaatatgtgtaagaatttatagcatggtaatggtgagactttatacaagtaggaaaagatgaattatgtttataaatgaaatgcctgccttgtggagaaaacaagctagatttttatgtcaacaaaac
s panTro4.chr8                 54962416 200 + 143986469 tcactaatagtttgctaccagctgaaaagacaggtaaatgaatgcaggagaatagaaaatccagaaacacccaaatatgtgtaagaatttataacatggtaatggtgagactttatacaagtaggaaaagatgaattatgtttataaatgaaatgcctgccttgtggagaaaacaagctagatttttatgtcaacaaaac
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59003627 200 + 153482349 TCACTAATAGTTTTCTACCAGCTGAAAagacaggtaaatgaatgcaggagaatagaaaatccagaaacacccaaatatgtgtaagaatttataacatggtaatggtgagactttatacaagtaggaaaagatgaattatgtttataaatgaaatgcctgccttgtggagaaaacaagctagatttttatgtcaacaaaat
i ponAbe2.chr8                 I 4519 C 0
s nomLeu3.chr16                48092340 199 + 100215132 tcactaatagtttgctaat-gctgaaaagacaggtaaatgaatgcaggagaatagaaaatccggaaacacccaaatatgtgtaagaatttataacatggtaatggtgagactttatacaagtaggaaaagatgaattatgtttataaatgaaatgcctgccttgtggagaaaactagctagatttttatgtcaacaaaac
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                 61643100 200 + 150158102 tcactaatagtttgctaacagctgaagagacaggtgaatgaatacaggagaatagaaaatccagaaacacccaaacatatgtaagaatttataacatggtaatggtgagactttatgcaagtaggaaaagataaattatgtttataaatgAAATGCCTGCCTTTTGGAGAAAACTAGCTAGATTTTTATGTCAACAAaac
i rheMac3.chr8                 C 0 I 46852
s macFas5.chr8                 58316134 200 + 146850525 TCACTAATAGTTTGCTAACAGCTGAAGAGACAGGTGAATGAATACAGGAGAATAGAAAATCCAGAAACACCCAAATATATGTAAGAATTTATAACATGGTAATGGTGAGACTTTATGCAAGTAGGAAAAGATAAATTATGTTTATAAATGAAATGCCTGCCTTTTGGAGAAAACTAGCTAGATTTTTATGTCAACAAaac
i macFas5.chr8                 C 0 I 47646
s chlSab2.chr8                 53242103 191 + 139301422 TCACTAATAGTTTGCTAACAGCTGAAGAGACAGGTAAATGAATACAGGAGAATAGAAAACCCAGAAACACCCAAATATATGTAAGAATTTATAACA---------TGAGACTTTATGCAAGTAGGAAAAGATAAATTATATTTATAAATGAAATGCCTGCCTTGTGGAGAAAACTAGCTAGATTTTTATGTCAACAAAAC
i chlSab2.chr8                 C 0 I 42227
s calJac3.chrUn_GL286234          14630 180 +    110629 tcaaagataatttgctaacagctgaaaagacagataaatgaattaaagagaatag---gtccagaaacaccc----------aagaatttataacc------tggtgagattttatgccaataggaaaagatgaattacatttataaatgaaatg-ctgctttgtggagaaaactagctcgatttttatgccaacaaaac
i calJac3.chrUn_GL286234       C 0 C 0
s saiBol1.JH378179              2753308 194 +  10880647 tcaaagataatttgctaacagctgaaaagacagataaatgaattgaagagaatagaaaatccagaaacacccaagtatatgtaagaatttataaca------tggtgagactttatgctaataggaaaagaTGAATTACATTTATAAATGAAATGCCTGCTTCGTGAAGAAAACTAGCTAGATTTTTATGCCAACAAAAC
i saiBol1.JH378179             C 0 C 0
e takFla1.KE120500               510640  77 +    663757 I
e fr3.chr9                      3740898 144 -  13922460 I
e macEug2.GL108065                80522 2890 -    187545 I
e sarHar1.chr5_GL861647_random   312559 5503 -   4230514 I
e taeGut2.chr1A                23686553 5559 +  73657157 I

a score=1314214.000000
s hg38.chr8_KI270814v1_alt        21597 597 +    141812 aagttcctcatggaatttagattaaaaaatttaaatatacaaaattagaaaaaattataaaaaataccagaagaaaacacaaatgcctatttatatagatagattatgatgttaacaaagaccttcctaagaacctcacaagcaagcattccgaaggtttaatttagcaaaattaaaattaagt----ctgtatatgacaaaaag------caAAAGACAACATACTTGTAAAATACTTACCGTGT--------GTGTGTGTACATATTATAT-------------------------------------------------CA-GAAATAGATCTTTATTTTACAGATAATTCTTTCAGATCGACGTGAAAAGAACTCTAAAATTGGGCAAAGTAT-TTTTTTCAGCTCTGCAAGTGATTTATGCACTTAGGAAAAA-----TT-AGTGTTCCTGGTAAGAGAAGGAATTTAATTTAAAAGCGGAATGAAATACTGTTTTCTAGCTAcaaagtttgtaaggatgaagagcagtgatatttacactactgcttaaagtttaagttgctgatgactttttaaatagacaatttgattgtaagtagcacatttagaaaatgtttatgccccttaccaatcaattctattatactaaaatatatttaggaaacaa
s panTro4.chr8                 54962616 595 + 143986469 gagttccttatggaatttagattaaaaaatttaaatatacaaaattagaaaaaattataaaaaataccagaagaaaacacaaatgcctatttatatagatagattgtgatgttaacaaagaccttcctaagaacctcacaagcaagcattccgaaggtttaatttagcaaaattaaaattaagt----ctgtatatgaaaaaaAG------CAAAAGACAACATACTTGTAAAATACTTACCGTGT--------GTGTGTATACATATTATAT-------------------------------------------------CA-GAAATAGATCTTTATTTTACAGATAATTCTTTCAGATCGACGTGAAAAGAACTCTAAAATTGGGCAAAGTAG-TTTTTTCAGCTCTGCAAGTGATTTATGCACATAGGAAAAA-----TT-AGTGTTCCTGGTAAGAGAAGGAATTTAATTTAAAAGCAGAATGAAATACTGTTTTCTatctacaaagtttgtaaggatgaagagcagtgatatttacactactgcttaaagtttaagttgctgatgactttttaaatagacaatttgattgtaagtagcacatttagaaaatgtttatgccccttaccaatcaattctattatactaaaatatatttaggaaac--
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59003827 594 + 153482349 gagttcctcatggaatttagattaaaaagtttaaatatacaaaattagaaaaaattataaaaaatatcagaagaaaacacaaatgcctatttatatagatggattgtgatgttaacaaagaccttcctaagaacctcacaagcaagcattccgaaggtttaatttagcaaaattaaaattaagt----ctgtatatgacaaaaag------caAAAAACAACATACTTGTAAAATACTTACCGTGT--------GTGTG--TCCATATTATAT-------------------------------------------------CA-GAAATAAATCTTTATTTTACAGATAATTCTTTCAGATCGATGTGAAAAGAACTCTAAAATTGGGCAAAGTAT-TTTTTTCAGCTCTGCAAGTGA-TTATGCACATAGGAAAAA-----GT-AGTGTTCCTGGTAAGAGAAGGAATTTAATTTAAAAGCGGAATGAGATACTGTTTTCTATCTACAAAGTTTGTAAGGATGAAGAGCAGTGATATTtacactactgcttaaagtttaagttgctgatgactttttaaatagacaatttggttataagtagcacatttagaaaatgtttatgccccttaccgatcaattctattatactaaaatatatttaggaaacaa
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                48092539 597 + 100215132 gatttcctcatggaatttagattaaaaaatttaaatatacaaaattataaaaaattataaaaaataccagaagaaaacacaaatgcctatttatatagatagattgtgattttaacaaagaccttcctaagaacctcacaagcaagcattccgaagatttaatttagcaaaattaaaattaagt----ctgtatatgacaaaaag------caAAAGACAACATACTTGTAAAATACTTACCGTGT--------GTGTGTGTACATATTATAG-------------------------------------------------CA-GAAATAGATCTTTATTTTACAGATAATTCTTTCAGATCGACGTGAAAAGAACTCTAAAATTGGGCAAAGTTT-TTTTTTCAGATCTGCAAGTGATTTATGCACATAGGAAAAA-----TT-AGTGTTCCTGGTAAGAGAAGGAATTTAATTTAAAAGTGGAATGAAATACTGTTTTCTAGCTAcaaagtttgtaaggatgaagagcagtgatatttacactactgcttaaagtttaagttgctgatgactttttaaatagacaatttggtggtaagtagcacatttagaaaatgtttatgccccttaccaatcaattctgttatactaaaatatatttaggaaacaa
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                 61690152 589 + 150158102 aagttcctcattgaatatagatt----attttaaatatgcaaaatgag-----------aaaaataccagaagaaaacacaaatgcctatttgtacagatacatttttgtgttgacaaagatcttcctaGGAACTTCCCAAGCAAGCAGTCTGAAGTTT--ATTTAGCAAAATTAAATTTAAATCACCCTGCATATGAGAAAAAG-----ATAAAAGACATCATACTTGTACAATATTTGCCACATTTGTTTTGTTGTGTGTACATATT------------------------------------------------------A-AAAACGGATATTCATTTTACAGAGAATTCTTCCAAATCAACAAGAAAAAATCTCTAAAATTGGGTGAAGTAC-TTTTTCCAGCTCTGCAAGTCACCTAT-CACATATGAAAAAAATATTT-AGTGTTTCTGAT--GAGAACAAATTTAATTTAAAAAAGGAATAAAATACCGTTTTCTGTCCTCAAAGTTTGTGAGGATGAGGAGCAGTGATATTTACACTGCTGCTTAAAG-TTAAGTTGCTGATGACTTTTCAAAAAGTCAGTTGGGTGGTAAGTATCACATTTAAACTATGTGTATGCCCTTTCTTGATCAATTCCATTATATTTAAATATATTTAGGAAACAA
i rheMac3.chr8                 I 46852 I 638
s macFas5.chr8                 58363980 594 + 146850525 AAGTTCCTCATTGAATATAAATT----ATTTTAAATATGCAAAATGAG-----------AAAAATACCAGAAGAAAACACAAATGCCTATTTATACAGATACATTTTTGTGTTGACAAAGATCTTCCTAGGAACTTCCCAAGCAAGCAGTCTGAAGTTT--ATTTAGCAAAATTAAATTTAAATCACCCTGCATATGAGAAAAAGATAAAATAAAAGACATCATACTTGTACAATATTTGCCACATTTGTTTTGTTGTGTGTACATATT------------------------------------------------------A-AAAACGGATATTCATTTTACAGAGAATTCTTCCAAATCAACAAGAAAAAATCTCTAAAATTGGGTGAAGTAC-TTTTTCCAGCTCTGCAAGTCACCTAT-CACATATGAAAAAAATATTT-AGTGTTTCTGAT--GAGAACAAATTTAATTTAAAAAAGGAATAAAATACCGTTTTCTGTCCTCAAAGTTTGTGAGGATGAGGAGCAGTGATATTTACACTGCTGCTTAAAG-TTAAGTTGCTGATGACTTTTCAAAAAGTCAGTTGGGTGGTAAGTATCACATTTAAACTATGTGTATGCCCTTTCTTGATCAATTCCATTATATTTAAATATATTTAGGAAACAA
i macFas5.chr8                 I 47646 C 0
s chlSab2.chr8                 53284521 593 + 139301422 AAGTTCCTCATTGAATATAGATT----ATTTTAAATATGCAAAATGAG-----------AAAAATACCAGGAGAAAACACAAATGCCTATTTATACAGATACATTTTTGTGTTGACAAAGATCTTCCTAGGAACTTCTCAAGCAAGCATTCTGAAGTTT--ATTTAGCAAAATTAAATTTAAATCACCCTACATATGAGAAAAAGATAAAATAAAAGACATCATACTTGTACAATATTTGCCACATTTGTTTTTTTGTGTGTACATATT------------------------------------------------------A-AAAATGGATATTCATTTTACAGAGAATTCTTCCAAATCAACAAGAAAAAATCTCTAAAATTGGGTGAAGTAC-TTTTTCCAGCTCTGCAAGTCACCTATGCACATATGAAAAAAATACTT-AGTGTTTCTGAT--GAGAACAAAATTAATTTAAAAAAGGAATGAAATACCGTTTTCTGTCctcaaagtttgtgaggatgaggagcagtgatatttacactgctgcttaaag-ttaagttgctgatgacttttcaaaaagtcaatttggtggtaagtatcacatttaaactatgtg--tgccctttcttgatcaattccattatatttaaatatatttaggaaacaa
i chlSab2.chr8                 I 42227 C 0
s calJac3.chrUn_GL286234          14810 607 +    110629 gagttccacatggaatttagatt---------aaatatacaaaattag----------aaaaactgccagaaggaaac---aatacctcttcatacagatagatttttgtgttaat---gaccttcctaagaccat--tatgcaagcattccaaaggtttaatttagcaaaattaaaactaaa-----ctttacatga-------------caaaagacatcatAGTTGTAAAATACTTAATGTGT--------GTGTGtatatatatataatatttattatataaatgatatatatttatatattacatatataacatatatataAAATGGATCTTCATTTTACAGAGAATTCTTTCAAGTCAACATGTGAAGAACTCTAAAATTGGACAAAGTAG-TTTCTTCAGATCTGGAAGTGATTTATGCACATACGAAAAA-----TT-AGTGTTTCTGCTAAGAGAAGGAATTGAATTTAAAAGCGGGATGAAATACTCTTTCCTATCTACAAAGTGTGTAAGGATGAAGAACAGTGATATTTACACTGCTGCTTAAAGTTT--GTTACTGATGAC---TTAAGTCTACAATGTGGTGGTAAGTACCACATTCAAAAAATGTTTATGCTCTTTACCGATCAATTCCATTATACTAAAATATATTTAGGAAACAA
i calJac3.chrUn_GL286234       C 0 C 0
s saiBol1.JH378179              2753502 551 +  10880647 AAGTTCCACATGGAATTTAAATT---------AAATATACAAAATTAG----------AAAAACTGCCAGAAGGAAAC---AATGCCTCTTCATACAGATAGATGTTTGTGTTAAC---GAACTTCCTAAGACCAT--TAAGCAAGCATTCCAAAGGTTTAATTTAGCAAAATTAAAACTAAA-----CTGTACATGA-------------CAGAAGACATCATAGTTGTAAAATACTGTGTGCGT--------GTGTGTAT------------------------------------------------------------TA-GAAATGGATCTTCATTTTACAGAGAATTCTTTCAAGTCAACATGTGAAGAACTCTAAAATTGGGCAAAGTAGTTTTTTTCAGATCTGGAAGTGATTTATGCACATAAGAAAAA-----TTAAGTGTTTCTGATAAGAGAAGGAATTTAATTTAAAAGCGGGATGAAATACTCTTTCCTATGTACAAAGTTTGTAAGGATGAAGAGCAATGACATTTACACTGCTGCTTAAAGTTT--GTTACTGATGACTTTTTAAATTGACAATGTGGTGATAAGTACCACATTGAAAAAATGTTTATGCCCATTACCGATCAATTTCATTATACTAAAATATATTTAGGAAACAA
i saiBol1.JH378179             C 0 C 0
e takFla1.KE120500               510640  77 +    663757 I
e fr3.chr9                      3740898 144 -  13922460 I
e macEug2.GL108065                80522 2890 -    187545 I
e sarHar1.chr5_GL861647_random   312559 5503 -   4230514 I
e taeGut2.chr1A                23686553 5559 +  73657157 I

a score=147804.000000
s hg38.chr8_KI270814v1_alt        22194 70 +    141812 tgagagatatatgcaaTTTGATTTTTTCAGCAGTGCTTAAAATATTATTGTATTAAAAAGAGTCCATATA
s panTro4.chr8                 54963211 68 + 143986469 --agagatacatgcaaTTTGATTTTTTCAGCAGTGCTTAAAATATTATTGTATTAAAAAGAGTCCATATA
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59004421 70 + 153482349 tgagagatacatgcaaTTTGTTTTTTTCAGCAGTGCTTAAAATATTATTGTATTAAGAAGAGTCCATATA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                48093136 66 + 100215132 tgagagatacatgcaaT----TTTTTTCAGCAGTGCTTAAAATATTATTGTATTAAGAAGAGTCCATATA
i nomLeu3.chr16                C 0 C 0
s macFas5.chr8                 58364574 70 + 146850525 CGAGAGATACATGCAATTTGTTTTTCTCAGCAGTGCTTAAAATATGGTTGTGTTAAGGAGAATCCATATA
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                 53285114 70 + 139301422 cgagagatacatgcaatttgtttttctcagcagtgcttaaaatatggttgtgttaaggagaatccatata
i chlSab2.chr8                 C 0 I 565
s calJac3.chrUn_GL286234          15417 67 +    110629 TGAGAGATACATGCAATTTGTTTTTCTCAGCCATGCTTAAAATATCATTGTATT---AAGAATTCATATA
i calJac3.chrUn_GL286234       C 0 C 0
s saiBol1.JH378179              2754053 70 +  10880647 TGAGAGATACATGCAATTTGTTTTTCTCAGCTGTGCTTAAAATATCATTGTATTAAGAAGAATCCATATA
i saiBol1.JH378179             C 0 C 0
e takFla1.KE120500               510640 77 +    663757 I
e fr3.chr9                      3740898 144 -  13922460 I
e macEug2.GL108065                80522 2890 -    187545 I
e sarHar1.chr5_GL861647_random   312559 5503 -   4230514 I
e taeGut2.chr1A                23686553 5559 +  73657157 I
e rheMac3.chr8                 61690741 638 + 150158102 I

a score=16182.000000
s hg38.chr8_KI270814v1_alt        22264 14 +    141812 GTGGAAGTCATAAA
s panTro4.chr8                 54963279 14 + 143986469 GTGGAAGTCATAAA
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59004491 14 + 153482349 ATGGAAGTCATAAA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                48093202 14 + 100215132 ATGGAAGTCATAAA
i nomLeu3.chr16                C 0 C 0
s macFas5.chr8                 58364644 14 + 146850525 ACAAATCTCATAAA
i macFas5.chr8                 C 0 I 386
s calJac3.chrUn_GL286234          15484 14 +    110629 AGGGAAGTAGTAAA
i calJac3.chrUn_GL286234       C 0 C 0
s saiBol1.JH378179              2754123 14 +  10880647 AGGGAAGTAGTAAA
i saiBol1.JH378179             C 0 C 0
e takFla1.KE120500               510640 77 +    663757 I
e fr3.chr9                      3740898 144 -  13922460 I
e macEug2.GL108065                80522 2890 -    187545 I
e sarHar1.chr5_GL861647_random   312559 5503 -   4230514 I
e taeGut2.chr1A                23686553 5559 +  73657157 I
e rheMac3.chr8                 61690741 638 + 150158102 I
e chlSab2.chr8                 53285184 565 + 139301422 I

a score=127858.000000
s hg38.chr8_KI270814v1_alt        22278 81 +    141812 TTTGTGGATTAGAGTATTCTGTGAACTTTTAGCACCTTCAGAAGTGAAGAGAACCTTTTTATCTGTGTTTGTTGatttata
s panTro4.chr8                 54963293 81 + 143986469 TTTGTGGATTAGAGTATTCTGTGAACTTTTAGCACCTTCAGAAGTGAAGAGAACCTTTTTATCTGTGTTTGTTGATTTATA
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59004505 81 + 153482349 TTTGTGGATTAGTGTATTCTGTGAACTTTTAGCACCTTCAGAAGTGAAGAGAACCTTTTTATCTGTGTTTGTTAATTTATA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                48093216 79 + 100215132 TTCGTGGATTAGTGTATTCTGTGAACTTTTAGCACCTTCAGAAGTGAAGAGAACCTTTTTATC--TGTTTGTTGATTTATA
i nomLeu3.chr16                C 0 C 0
s macFas5.chr8                 58365044 79 + 146850525 tctatGGATTAGTATAGTCTGTGAACTTTTAGTGTCTTTGGAAGTGAAGATAACC--TTTATCTGTGATAGTAGTTTTATA
i macFas5.chr8                 I 386 C 0
s calJac3.chrUn_GL286234          15498 81 +    110629 TTTGTGGATTAGTGTATTCTGTGAACTTTTAGCATCTTCAGAAGTGAAGAGAATCTTTTCATCTGTGTTTGTTGAGTTATG
i calJac3.chrUn_GL286234       C 0 C 0
s saiBol1.JH378179              2754137 81 +  10880647 TTTGTGGATTAGTGTATTCTGTGAACTTTTAGCATCTTCAGAAGTGAAGAGAATGTTTTCATCTGTGTTTGTTGATTTATA
i saiBol1.JH378179             C 0 C 0
e takFla1.KE120500               510640 77 +    663757 I
e fr3.chr9                      3740898 144 -  13922460 I
e macEug2.GL108065                80522 2890 -    187545 I
e sarHar1.chr5_GL861647_random   312559 5503 -   4230514 I
e taeGut2.chr1A                23686553 5559 +  73657157 I
e rheMac3.chr8                 61690741 638 + 150158102 I
e chlSab2.chr8                 53285184 565 + 139301422 I

a score=127161.000000
s hg38.chr8_KI270814v1_alt        22359 129 +    141812 tac---tttttttttctttctttctttgagacagagtctcac------------------------------gttctcggctcaatgccacctctgcctgccgagttcaagctattctcatgcctcagcctccaaagtagctgggattacagccatacatta
s panTro4.chr8                 54963374 129 + 143986469 TAC---tttttttttctttctttctttgagacagagtctcac------------------------------gttctcggctcaatgccacctctgcctgccgagttcaagctattctcatgcctcagcctccaaagtagctgggattacagccatacatta
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59004586 130 + 153482349 TAC--ttttttttttctttctttctttgagacagagtctcac------------------------------attctcggctcaatgccacctctgcctgccgagttcaagctattctcatgccttagcctccaaagtagctgcgattacagccatacatta
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                48093295 124 + 100215132 TAC----TTTTTTTTCTTTCTTTCTTTG----AGAGTCTcac------------------------------gttcttggctcagtgccacctctgcctgccgagttcaagctattctcatgcctcagcctctaaagtagctgggattacagCCATACATTA
i nomLeu3.chr16                C 0 C 0
s calJac3.chrUn_GL286234          15579 157 +    110629 TAC----tttttttcctttttttgttcaagacaaagcctcactgttttatccatgccggaggc-agtcacgtgttcttggctcactgccacccctgtgtcccgagttcaagcgattctcctggctcaggctccaaagtagtcggatttacatgcatacatta
i calJac3.chrUn_GL286234       C 0 C 0
s saiBol1.JH378179              2754218 162 +  10880647 TCCtttttttttttcctttttttgttcaagacaaagcctcactgttttatccaggctggaggcaagtcacgtgttcttggctcactgtcacccctgtgtcccgagttcaagcaattctcatggctcagcctccaaagtagtcgagtttacatgcatacatta
i saiBol1.JH378179             C 0 C 0
e takFla1.KE120500               510640  77 +    663757 I
e fr3.chr9                      3740898 144 -  13922460 I
e macEug2.GL108065                80522 2890 -    187545 I
e sarHar1.chr5_GL861647_random   312559 5503 -   4230514 I
e taeGut2.chr1A                23686553 5559 +  73657157 I
e rheMac3.chr8                 61690741 638 + 150158102 I
e macFas5.chr8                 58365123   0 + 146850525 C
e chlSab2.chr8                 53285184 565 + 139301422 I

a score=101623.000000
s hg38.chr8_KI270814v1_alt        22488 154 +    141812 tgacgcctagctaaatttttttatttttagcggagatgtagttttagttttgccatgttggtcagactggttttgaactcctggcctcaagcag-ttcacccgcctcggcgtccccaagtgctgggattacaggcgtgagccactgcgcccaacc
s panTro4.chr8                 54963503 154 + 143986469 tgacgcctagctaaatttttttatttttagtggagatgtagttttagttttgccatgttggtcagactggttttgaactcctggcctcaagcag-ttcacccgcctcggcgtccccaagtgctgggattacaggcgtgagccactgcgcccaacc
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59004716 148 + 153482349 tgacgcctagctaaatttttttatttttagtggagatg------tagttttgccatgttggtcagactggttttgaactcctggcctcaagcag-ttcacccacctccgcgtccccgagtgctgggattacaggcatgagccactgcgcccaacc
i ponAbe2.chr8                 C 0 C 0
s calJac3.chrUn_GL286234          15736 145 +    110629 ggacacccgctgaaaattttgtatttttagtggagatg------taatgttgccatattggtcagactggtcttgacctcctggcctcaagcaatttcacctgcctctg----cctatgtcctgggattacaaacatgagtcgctgcaccagacc
i calJac3.chrUn_GL286234       C 0 C 0
s saiBol1.JH378179              2754380 148 +  10880647 ggacacccactgaaaattctgtattttcagtggagctg------taatgttgccaaattggtcagactggtcttgacctcctggcctcaagcaa-ttcacctgcctcggcctccctatgtcctgggattacaagcatgagtcgctgcaccagacc
i saiBol1.JH378179             C 0 C 0
e takFla1.KE120500               510640  77 +    663757 I
e fr3.chr9                      3740898 144 -  13922460 I
e macEug2.GL108065                80522 2890 -    187545 I
e sarHar1.chr5_GL861647_random   312559 5503 -   4230514 I
e taeGut2.chr1A                23686553 5559 +  73657157 I
e nomLeu3.chr16                48093419   0 + 100215132 C
e rheMac3.chr8                 61690741 638 + 150158102 I
e macFas5.chr8                 58365123   0 + 146850525 C
e chlSab2.chr8                 53285184 565 + 139301422 I

a score=71684.000000
s hg38.chr8_KI270814v1_alt        22642 94 +    141812 tatatatacattttattagacacatatgtttgtattatatatagatttatttcctatatGGCAATCATTATAGATTAATAATTTTAGTTTAGTT
s panTro4.chr8                 54963657 94 + 143986469 TATATATACATTTTATTAGACACATATGTTTGTATTATATATAGATTTATTTCCTATATGCCAATCATTATAGATTAATAATTTTAGTTTAGTT
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59004864 89 + 153482349 TATATATACATTTTATTAGACACATATGTTTGTATTATATATAGACTTATTTCCTATATGCCAATCATTATAGattaataat-----tttagtt
i ponAbe2.chr8                 C 0 C 0
s macFas5.chr8                 58365123 86 + 146850525 TATGTACATATTTTATTAAACACATG---TTTTATTATGTGTAGTTTTATTACATATATGCCAATAATTAAATATTAATCAG-----TTTAGTG
i macFas5.chr8                 C 0 I 3
s calJac3.chrUn_GL286234          15881 81 +    110629 TATATATACATTTTATTAGACACATATGTTTGCATTATTTATAGATTTATTTCCTATATGCCA---ATTATAGATTAATAATTT----------
i calJac3.chrUn_GL286234       C 0 C 0
s saiBol1.JH378179              2754528 72 +  10880647 TATATAT--ATTTTATTAGACACATATGTTTGCATTATGTATAG----ATTTCCTGTATGCCA---ATTATAGATTAATAG-------------
i saiBol1.JH378179             C 0 C 0
e takFla1.KE120500               510640 77 +    663757 I
e fr3.chr9                      3740898 144 -  13922460 I
e macEug2.GL108065                80522 2890 -    187545 I
e sarHar1.chr5_GL861647_random   312559 5503 -   4230514 I
e taeGut2.chr1A                23686553 5559 +  73657157 I
e nomLeu3.chr16                48093419  0 + 100215132 C
e rheMac3.chr8                 61690741 638 + 150158102 I
e chlSab2.chr8                 53285184 565 + 139301422 I

a score=128642.000000
s hg38.chr8_KI270814v1_alt        22736 68 +    141812 TTATTATGAAAATAAAAATAGCAAGTATAAGTGATTATTACCATTGCACAAATATTGCTTTATTTGTA
s panTro4.chr8                 54963751 68 + 143986469 TTATTATGAAAATAAAAATAGCAAGTATAAGTGATTATTACCATTGCACAAATATTGGTTTATTTGTA
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59004953 68 + 153482349 ttattatgaaaataaaaataGCAAATATAAGTGATTATTACCATTGCACAAATATTGCTTTATTTGTA
i ponAbe2.chr8                 C 0 C 0
s rheMac3.chr8                 61691379 68 + 150158102 TTATTATGAAAATAAAAATAGTGAATATAAGTAACTATTACCATTGTGAAAATACTACTTTATTTGTA
i rheMac3.chr8                 I 638 I 46
s macFas5.chr8                 58365212 68 + 146850525 TTATTATGAAAATAAAAATAGTGAATATAAGTAACTATTACCATTGTGAAAATACTACTTTATTTGTA
i macFas5.chr8                 I 3 C 0
s chlSab2.chr8                 53285749 68 + 139301422 TTATTATGAAAATAAAAATAGTGAATATAAGTAACTATTACCATTGTGAAAATACTACTTTATTTGTA
i chlSab2.chr8                 I 565 I 46
s calJac3.chrUn_GL286234          15962 63 +    110629 GTTTTATGAAAAT-----TAGCAAGTATGAGTGCTTACTAACATTGCAAAAATATTGCTTTATTTGTA
i calJac3.chrUn_GL286234       C 0 C 0
s saiBol1.JH378179              2754600 61 +  10880647 --TTTATGAAAAT-----TAGCAAGTATGAGTGCTTACTAACATTGCAAAAATATTGCTTTATTTGTA
i saiBol1.JH378179             C 0 C 0
e takFla1.KE120500               510640 77 +    663757 I
e fr3.chr9                      3740898 144 -  13922460 I
e macEug2.GL108065                80522 2890 -    187545 I
e sarHar1.chr5_GL861647_random   312559 5503 -   4230514 I
e taeGut2.chr1A                23686553 5559 +  73657157 I
e nomLeu3.chr16                48093419  0 + 100215132 C

a score=38044.000000
s hg38.chr8_KI270814v1_alt        22804 48 +    141812 GTAG---TTTTTTAAAATATCGAACGTCACAGCGGTATTTATCCATTTTTA
s panTro4.chr8                 54963819 48 + 143986469 GTAG---TTTTTTAAAATATCGAACGTCACAGCGGTATTTATCCATTTTTA
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59005021 49 + 153482349 GTAGT--TTTTTTAAAATATCGAACGTCACAGCGGTATTTATCCATTTTTA
i ponAbe2.chr8                 C 0 C 0
s macFas5.chr8                 58365280 46 + 146850525 ----TCTGTTTTTAAAATATAAAACTTCCCAACTGCATTTATTCATTTTA-
i macFas5.chr8                 C 0 C 0
s calJac3.chrUn_GL286234          16025 48 +    110629 GCAA---TCTTTTAAAATAATGAACATCACAATGGTATGTATACATTTTTA
i calJac3.chrUn_GL286234       C 0 C 0
s saiBol1.JH378179              2754661 48 +  10880647 GCAG---TCTTTTAAAATAACGAACCTCACAATGGGATGTATACATTTTTA
i saiBol1.JH378179             C 0 C 0
e takFla1.KE120500               510640 77 +    663757 I
e fr3.chr9                      3740898 144 -  13922460 I
e macEug2.GL108065                80522 2890 -    187545 I
e sarHar1.chr5_GL861647_random   312559 5503 -   4230514 I
e taeGut2.chr1A                23686553 5559 +  73657157 I
e nomLeu3.chr16                48093419  0 + 100215132 C
e rheMac3.chr8                 61691447 46 + 150158102 I
e chlSab2.chr8                 53285817 46 + 139301422 I

a score=-2396.000000
s hg38.chr8_KI270814v1_alt        22852 1 +    141812 -A
s panTro4.chr8                 54963867 1 + 143986469 -A
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59005070 1 + 153482349 -A
i ponAbe2.chr8                 C 0 C 0
s calJac3.chrUn_GL286234          16073 1 +    110629 T-
i calJac3.chrUn_GL286234       C 0 C 0
s saiBol1.JH378179              2754709 1 +  10880647 T-
i saiBol1.JH378179             C 0 C 0
e takFla1.KE120500               510640 77 +    663757 I
e fr3.chr9                      3740898 144 -  13922460 I
e macEug2.GL108065                80522 2890 -    187545 I
e sarHar1.chr5_GL861647_random   312559 5503 -   4230514 I
e taeGut2.chr1A                23686553 5559 +  73657157 I
e nomLeu3.chr16                48093419 0 + 100215132 C
e rheMac3.chr8                 61691447 46 + 150158102 I
e macFas5.chr8                 58365326 0 + 146850525 C
e chlSab2.chr8                 53285817 46 + 139301422 I

a score=64040.000000
s hg38.chr8_KI270814v1_alt        22853 229 +    141812 AAATCCATTTATTTggccaagagtggtggctcatgcctgtaatcccacactttgggaggccgacgcaggtgaatcacgaggtcaagagatctagaccatcctggccaacgtggtgaaaccccatctctactaaaaatacgaaaagtagcctggcgtggtggcgtgtgactatagtcccagctactctggagggtgaggcaggagaatcgcttgaacccgggaggcagag
s panTro4.chr8                 54963868 229 + 143986469 AAATCCATTTATTCggccaagagtggtggctcatgcctgtaatcccacactttgggaggccgacgcgggtgaatcacgaggtcaagagatctagaccatcctggccaacgtggtgaaaccccatctctactaaaaatacgaaaagtagcctggcgtggtggcgtgtgactatagtcccagctactctggagggtgaggcaggagaatcgcttgaacccgggaggcagag
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59005071 229 + 153482349 AAATCCATTTATTCggccaagagtggtggctcatgcctgtaatcccgcactttgggaggccgacgcgggtgaatcacgaggtcaagagatctagaccatcctggccaacatggtgaaaccccatctctactaaaaatacgaaaagtagcctggcgtggtggcgtgtgactatggtcccagctactctggagggtgaagcaggagaatcgcttgaacccgggaagcagag
i ponAbe2.chr8                 C 0 I 13
e takFla1.KE120500               510640  77 +    663757 I
e fr3.chr9                      3740898 144 -  13922460 I
e macEug2.GL108065                80522 2890 -    187545 I
e sarHar1.chr5_GL861647_random   312559 5503 -   4230514 I
e calJac3.chrUn_GL286234          16074   0 +    110629 C
e taeGut2.chr1A                23686553 5559 +  73657157 I
e nomLeu3.chr16                48093419   0 + 100215132 C
e rheMac3.chr8                 61691447  46 + 150158102 I
e macFas5.chr8                 58365326   0 + 146850525 C
e saiBol1.JH378179              2754710   0 +  10880647 C
e chlSab2.chr8                 53285817  46 + 139301422 I

a score=482.000000
s hg38.chr8_KI270814v1_alt        23082 5 +    141812 gttgc
s panTro4.chr8                 54964097 5 + 143986469 gttgc
i panTro4.chr8                 C 0 C 0
e takFla1.KE120500               510640 77 +    663757 I
e fr3.chr9                      3740898 144 -  13922460 I
e macEug2.GL108065                80522 2890 -    187545 I
e sarHar1.chr5_GL861647_random   312559 5503 -   4230514 I
e calJac3.chrUn_GL286234          16074 0 +    110629 C
e taeGut2.chr1A                23686553 5559 +  73657157 I
e nomLeu3.chr16                48093419 0 + 100215132 C
e rheMac3.chr8                 61691447 46 + 150158102 I
e macFas5.chr8                 58365326 0 + 146850525 C
e saiBol1.JH378179              2754710 0 +  10880647 C
e chlSab2.chr8                 53285817 46 + 139301422 I
e ponAbe2.chr8                 59005300 13 + 153482349 I

a score=20025.000000
s hg38.chr8_KI270814v1_alt        23087 94 +    141812 aatgagccaaggtcacgccactgcactccagcctggtgacagagtgagactttgtctcaaaaaaaaaaaaaaaaaaaaaaaaagaagaaaaaag
s panTro4.chr8                 54964102 89 + 143986469 aatgagccaaggtcacgccactgcactccagcctggtgacagagtgagactttgtctcaaaaaaagaaaaaaaaaaaaa-----aagaaaaaaG
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59005313 82 + 153482349 actgagccaaggtcacgccactg-----cagcctggtgacagagcgagactttgtctcaaaaaaaaaaaaaaagaaa-------aagaaaaaaG
i ponAbe2.chr8                 I 13 C 0
e takFla1.KE120500               510640 77 +    663757 I
e fr3.chr9                      3740898 144 -  13922460 I
e macEug2.GL108065                80522 2890 -    187545 I
e sarHar1.chr5_GL861647_random   312559 5503 -   4230514 I
e calJac3.chrUn_GL286234          16074  0 +    110629 C
e taeGut2.chr1A                23686553 5559 +  73657157 I
e nomLeu3.chr16                48093419  0 + 100215132 C
e rheMac3.chr8                 61691447 46 + 150158102 I
e macFas5.chr8                 58365326  0 + 146850525 C
e saiBol1.JH378179              2754710  0 +  10880647 C
e chlSab2.chr8                 53285817 46 + 139301422 I

a score=1365.000000
s hg38.chr8_KI270814v1_alt        23181 1 +    141812 a
s panTro4.chr8                 54964191 1 + 143986469 A
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59005395 1 + 153482349 A
i ponAbe2.chr8                 C 0 C 0
s rheMac3.chr8                 61691493 1 + 150158102 A
i rheMac3.chr8                 I 46 C 0
s macFas5.chr8                 58365326 1 + 146850525 A
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                 53285863 1 + 139301422 A
i chlSab2.chr8                 I 46 C 0
e takFla1.KE120500               510640 77 +    663757 I
e fr3.chr9                      3740898 144 -  13922460 I
e macEug2.GL108065                80522 2890 -    187545 I
e sarHar1.chr5_GL861647_random   312559 5503 -   4230514 I
e calJac3.chrUn_GL286234          16074 0 +    110629 C
e taeGut2.chr1A                23686553 5559 +  73657157 I
e nomLeu3.chr16                48093419 0 + 100215132 C
e saiBol1.JH378179              2754710 0 +  10880647 C

a score=319758.000000
s hg38.chr8_KI270814v1_alt        23182 170 +    141812 aaaTCCATTTATTCATCACCTATAAGCTGAATACCTGTTGTATAGAAGACATATTCTGCTAACTCTCAAGACCCTTCCATCCTTAAAAATTTCATGTTTACCTTCCCAGCCTGAGAGCAAGCTGAGAGGTTTAAAATTGGAGTATTAGGACTGAA-TCGCAATTGAAGCTT
s panTro4.chr8                 54964192 170 + 143986469 AAATCCATTTATTCATCACCTATAAGCTGAATACCTGTTGTATAGAAGACATATTCTGCTAACTCTCAAGACCCTTCTATCCTTAAAAATTTCATGTTTACCTTCCCAGCCTGAGAGCAAGCTGAGAGGTTTAAAATTGGAGTTTTAGGACTGAA-TCGCAATTGAAGCTT
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59005396 168 + 153482349 TAATCCATTTATTCATCACCTATAAGCTGAATACCTGTTATATAGAAGACATATTCTGCTAACTCTCAAGACCCTTCCATCCTTAAAAATTTCAAGTTTACCTTCCCAGCCT--AAGTAAGCTGAGAGGTTTAAAATTGGAGTATTAGGACTGAA-TCGCAATTGAAGCTT
i ponAbe2.chr8                 C 0 C 0
s rheMac3.chr8                 61691494 168 + 150158102 AAATCTATTTATTCATCAAATATAAACTGAATACTTGTTATGTAAAAGACACATTATAATAACTATCAACACCCTTCTATTCTTAAAAATTTCATGTGTACCTGCCTGGCCT--GAGCAAGCTGAGAGATTTAAAATTAGAGAATGAGGAATGAG-TCTCAACTGAAGCTT
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                 58365327 168 + 146850525 AAATCTATTTATTCATCAAATATAAACTGAATACTTGTTATGTAAAAGACACATTATAATAACTATCAACACCCTTCTATTCTTAAAAATTTCATGTGTACCTGCCTGGCCT--GAGCAAGCTGAGAGATTTAAAATTAGAGAATGAGGAATGAG-TCTCAACTGAAGCTT
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                 53285864 168 + 139301422 AAATCTATTTATTCATCAAATATAAACTGAATACTTGTTATGTAAAAGACACATTATAATAACTATCAACACCCTTCTATTCTTAAAAATTTCATGTGTACCTGCCTGGCCT--GAGCAAGCTGAGAGATTTAAAATTAGAGAATGAGGAATGAG-TCTCAACTGAAGCTT
i chlSab2.chr8                 C 0 I 1521
s calJac3.chrUn_GL286234          16074 169 +    110629 AAATCCATTTATTGATCAACTATAAGTGGAATACCTGTTATGTAGAAGACACATTCCACTAAATCTCAAGAAACATCCATCCTTAAAAATTTCATGTTTACCTTCCCTGCCT--GAGCAAGAGGAGAAGTTTAAAATTGCAGTATTGGGACAGAATTTGCAACTGAATCTT
i calJac3.chrUn_GL286234       C 0 C 0
s saiBol1.JH378179              2754710 168 +  10880647 AAATCCATTTATTGATCAGCTATAAGCGGAATACCTATTATGTAGAAGACATATTCGACTAAATCTCAAGAACCATCCGTCCTTAAAAATTTCTTGTTTACCTTCCCTGCCT--GAGCAAGATGAGAGTTTTAAAATTGCAGTATTGGGACAGAA-TTGCAACTGAATCTT
i saiBol1.JH378179             C 0 C 0
e takFla1.KE120500               510640  77 +    663757 I
e fr3.chr9                      3740898 144 -  13922460 I
e macEug2.GL108065                80522 2890 -    187545 I
e sarHar1.chr5_GL861647_random   312559 5503 -   4230514 I
e taeGut2.chr1A                23686553 5559 +  73657157 I
e nomLeu3.chr16                48093419   0 + 100215132 C

a score=55216.000000
s hg38.chr8_KI270814v1_alt        23352 47 +    141812 TTTTCCTTGTTTTTCA-AACAAAAGCATTTCTGATGTGAGAAAGCAGT
s panTro4.chr8                 54964362 47 + 143986469 TTTTCCTTGTTTTTCA-AACAAAAGCATTTCTGATGTGAGAAAGCAGT
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59005564 47 + 153482349 TTTTCCTTGTCTTTCA-AACAAAAGCATTTTTGATGTGAGAAAGCAGT
i ponAbe2.chr8                 C 0 C 0
s rheMac3.chr8                 61691662 48 + 150158102 GTCCTCTCATCTTTCACAAAAAAATCATTTCTGATGTGAGAAAGTAGT
i rheMac3.chr8                 C 0 I 1473
s macFas5.chr8                 58365495 48 + 146850525 GTCCTCTCATCTTTCACAAAAAAATCATTTCTGATGTGAGAAAGTAGT
i macFas5.chr8                 C 0 C 0
s calJac3.chrUn_GL286234          16243 43 +    110629 TTATTCTTGTCATTCA-AACA----AGTTTCTGTTATGGGAAAGTAGT
i calJac3.chrUn_GL286234       C 0 C 0
s saiBol1.JH378179              2754878 47 +  10880647 TTATTCTTGTCATTTA-AACAAGAGAGTTTCTGATATGAGAAAGTAGT
i saiBol1.JH378179             C 0 C 0
e takFla1.KE120500               510640 77 +    663757 I
e fr3.chr9                      3740898 144 -  13922460 I
e macEug2.GL108065                80522 2890 -    187545 I
e sarHar1.chr5_GL861647_random   312559 5503 -   4230514 I
e taeGut2.chr1A                23686553 5559 +  73657157 I
e nomLeu3.chr16                48093419  0 + 100215132 C
e chlSab2.chr8                 53286032 1521 + 139301422 I

a score=135.000000
s hg38.chr8_KI270814v1_alt        23399 2 +    141812 AT
s panTro4.chr8                 54964409 2 + 143986469 CT
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59005611 2 + 153482349 AT
i ponAbe2.chr8                 C 0 C 0
s macFas5.chr8                 58365543 2 + 146850525 GC
i macFas5.chr8                 C 0 I 1
s calJac3.chrUn_GL286234          16286 2 +    110629 AC
i calJac3.chrUn_GL286234       C 0 C 0
s saiBol1.JH378179              2754925 2 +  10880647 AC
i saiBol1.JH378179             C 0 C 0
e takFla1.KE120500               510640 77 +    663757 I
e fr3.chr9                      3740898 144 -  13922460 I
e macEug2.GL108065                80522 2890 -    187545 I
e sarHar1.chr5_GL861647_random   312559 5503 -   4230514 I
e taeGut2.chr1A                23686553 5559 +  73657157 I
e nomLeu3.chr16                48093419 0 + 100215132 C
e rheMac3.chr8                 61691710 1473 + 150158102 I
e chlSab2.chr8                 53286032 1521 + 139301422 I

a score=2548.000000
s hg38.chr8_KI270814v1_alt        23401 1 +    141812 A
s panTro4.chr8                 54964411 1 + 143986469 A
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59005613 1 + 153482349 A
i ponAbe2.chr8                 C 0 C 0
s rheMac3.chr8                 61693183 1 + 150158102 A
i rheMac3.chr8                 I 1473 C 0
s macFas5.chr8                 58365546 1 + 146850525 A
i macFas5.chr8                 I 1 C 0
s chlSab2.chr8                 53287553 1 + 139301422 A
i chlSab2.chr8                 I 1521 C 0
s calJac3.chrUn_GL286234          16288 1 +    110629 A
i calJac3.chrUn_GL286234       C 0 C 0
s saiBol1.JH378179              2754927 1 +  10880647 A
i saiBol1.JH378179             C 0 I 13
e takFla1.KE120500               510640 77 +    663757 I
e fr3.chr9                      3740898 144 -  13922460 I
e macEug2.GL108065                80522 2890 -    187545 I
e sarHar1.chr5_GL861647_random   312559 5503 -   4230514 I
e taeGut2.chr1A                23686553 5559 +  73657157 I
e nomLeu3.chr16                48093419 0 + 100215132 C

a score=14295.000000
s hg38.chr8_KI270814v1_alt        23402 20 +    141812 CATTTTACTTTAAATATCAA
s panTro4.chr8                 54964412 20 + 143986469 CATTTTACTTTAAATATCAA
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59005614 20 + 153482349 AATTTTACTTTAAATATCAA
i ponAbe2.chr8                 C 0 C 0
s rheMac3.chr8                 61693184 20 + 150158102 CATTTTACTTTAAATACTAA
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                 58365547 11 + 146850525 GAT---------AATATCAG
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                 53287554 20 + 139301422 CATTTTACTTTAAATACTAA
i chlSab2.chr8                 C 0 C 0
s calJac3.chrUn_GL286234          16289 11 +    110629 GAT---------AACATAGA
i calJac3.chrUn_GL286234       C 0 C 0
e takFla1.KE120500               510640 77 +    663757 I
e fr3.chr9                      3740898 144 -  13922460 I
e macEug2.GL108065                80522 2890 -    187545 I
e sarHar1.chr5_GL861647_random   312559 5503 -   4230514 I
e taeGut2.chr1A                23686553 5559 +  73657157 I
e nomLeu3.chr16                48093419  0 + 100215132 C
e saiBol1.JH378179              2754928 13 +  10880647 I

a score=1365.000000
s hg38.chr8_KI270814v1_alt        23422 1 +    141812 T
s panTro4.chr8                 54964432 1 + 143986469 T
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59005634 1 + 153482349 T
i ponAbe2.chr8                 C 0 C 0
s rheMac3.chr8                 61693204 1 + 150158102 T
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                 58365558 1 + 146850525 T
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                 53287574 1 + 139301422 T
i chlSab2.chr8                 C 0 C 0
e takFla1.KE120500               510640 77 +    663757 I
e fr3.chr9                      3740898 144 -  13922460 I
e macEug2.GL108065                80522 2890 -    187545 I
e sarHar1.chr5_GL861647_random   312559 5503 -   4230514 I
e calJac3.chrUn_GL286234          16300 0 +    110629 C
e taeGut2.chr1A                23686553 5559 +  73657157 I
e nomLeu3.chr16                48093419 0 + 100215132 C
e saiBol1.JH378179              2754928 13 +  10880647 I

a score=63127.000000
s hg38.chr8_KI270814v1_alt        23423 78 +    141812 ATTTTAAAAGAAGTATTAGAGAGTATGCCTTTCTTTTATGCATTTACGATACATATTTGAATTTGTTAGAGTTAAAAC
s panTro4.chr8                 54964433 78 + 143986469 ATTTTAAAAGAAGTATTAGAGAGTATGCCTTTCTTTTATGCATTTACGATACATATTTGAATTTGTTAGAGTTAAAAC
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59005635 78 + 153482349 ATTTTTAAAGAAGTATTAGAGAGTATGCCTTTCTTTTATGCATTTACGATACATATTTGAATTTGTTAGAGTTAAAAC
i ponAbe2.chr8                 C 0 C 0
s rheMac3.chr8                 61693205 78 + 150158102 ATCTTTCAAAAAGTATTAGAGAGTATGGCTTTCTTTTATGCATTTATGGTACATATTTGAATTTGTTATAGGTAAAAC
i rheMac3.chr8                 C 0 I 23
s chlSab2.chr8                 53287575 78 + 139301422 ATCTTTTAAAAAGTATTAGAGAGTATGGCTTTCTTTTATGCATTTATGGTACATATTTGAATTTGTTATAGGTAAAAC
i chlSab2.chr8                 C 0 I 56
e takFla1.KE120500               510640 77 +    663757 I
e fr3.chr9                      3740898 144 -  13922460 I
e macEug2.GL108065                80522 2890 -    187545 I
e sarHar1.chr5_GL861647_random   312559 5503 -   4230514 I
e calJac3.chrUn_GL286234          16300  0 +    110629 C
e taeGut2.chr1A                23686553 5559 +  73657157 I
e nomLeu3.chr16                48093419  0 + 100215132 C
e macFas5.chr8                 58365559  0 + 146850525 C
e saiBol1.JH378179              2754928 13 +  10880647 I

a score=6176.000000
s hg38.chr8_KI270814v1_alt        23501 25 +    141812 ATTTTTTTCAAAAAGTTTTTCACCC
s panTro4.chr8                 54964511 25 + 143986469 ATTTTTTTCAAACAGTTTTTCACCC
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59005713 25 + 153482349 ATTGTTTTCAAACAGTTTTTCACCC
i ponAbe2.chr8                 C 0 C 0
e takFla1.KE120500               510640 77 +    663757 I
e fr3.chr9                      3740898 144 -  13922460 I
e macEug2.GL108065                80522 2890 -    187545 I
e sarHar1.chr5_GL861647_random   312559 5503 -   4230514 I
e calJac3.chrUn_GL286234          16300  0 +    110629 C
e taeGut2.chr1A                23686553 5559 +  73657157 I
e nomLeu3.chr16                48093419  0 + 100215132 C
e rheMac3.chr8                 61693283 23 + 150158102 I
e macFas5.chr8                 58365559  0 + 146850525 C
e saiBol1.JH378179              2754928 13 +  10880647 I
e chlSab2.chr8                 53287653 56 + 139301422 I

a score=5784.000000
s hg38.chr8_KI270814v1_alt        23526 14 +    141812 AGGA--TTTTTTTTTC
s panTro4.chr8                 54964536 14 + 143986469 AGGA--TTTTTTTTTC
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59005738 16 + 153482349 AGGATTTTTTTTTTTC
i ponAbe2.chr8                 C 0 C 0
s rheMac3.chr8                 61693306 14 + 150158102 AGTA--TTTTTTTTTC
i rheMac3.chr8                 I 23 C 0
e takFla1.KE120500               510640 77 +    663757 I
e fr3.chr9                      3740898 144 -  13922460 I
e macEug2.GL108065                80522 2890 -    187545 I
e sarHar1.chr5_GL861647_random   312559 5503 -   4230514 I
e calJac3.chrUn_GL286234          16300  0 +    110629 C
e taeGut2.chr1A                23686553 5559 +  73657157 I
e nomLeu3.chr16                48093419  0 + 100215132 C
e macFas5.chr8                 58365559  0 + 146850525 C
e saiBol1.JH378179              2754928 13 +  10880647 I
e chlSab2.chr8                 53287653 56 + 139301422 I

a score=11928.000000
s hg38.chr8_KI270814v1_alt        23540 19 +    141812 TTTCTAACCTACTGTAAAA
s panTro4.chr8                 54964550 19 + 143986469 TTTCTAACCTACTGTAAAA
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59005754 19 + 153482349 TTTCTAACCTACTGTAAAA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                48093419 19 + 100215132 TTTCTAACCTACTGTAAAA
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                 61693320 14 + 150158102 ----TAA-CTAGTGTACAA
i rheMac3.chr8                 C 0 C 0
e takFla1.KE120500               510640 77 +    663757 I
e fr3.chr9                      3740898 144 -  13922460 I
e macEug2.GL108065                80522 2890 -    187545 I
e sarHar1.chr5_GL861647_random   312559 5503 -   4230514 I
e calJac3.chrUn_GL286234          16300  0 +    110629 C
e taeGut2.chr1A                23686553 5559 +  73657157 I
e macFas5.chr8                 58365559  0 + 146850525 C
e saiBol1.JH378179              2754928 13 +  10880647 I
e chlSab2.chr8                 53287653 56 + 139301422 I

a score=476342.000000
s hg38.chr8_KI270814v1_alt        23559 447 +    141812 CAACACAGGAAAGCAAAATTGGCCGGCATAAATTGAATcaacatgtaaaattt---------------------------------------------------------------------------------------------aggagacatgcaaaaatctgtatttcacgctcctcttaaacaatcaattctggtttcccttgagcccatattactgtttggtgtgctatgaagaggctgtagatt-aaagtaagtctatgttctctagtttgtcactgtgcccacctaggtacgtcacttactcaggtcACACCCTTTACCTCTGTAAATATTTTAGTTAACAATTCCTGTCGTATTGT----------AAAGATTTCAAGGTTTTTAAGACAGTTGAAAA----TTATAGTATGTAGT-TATATATTA-ATCCCTTAATAATGGAGTTGACTTTTAGAATTTAGAAGTTGTTTGTTAAAACAACGATTTTTCTT----TATGCCATAAATAATCATCTCATTAGAATGTTTATAAGCCTTTTTAGGTTAATCGT
s panTro4.chr8                 54964569 447 + 143986469 CAACACAGGGAAGCAAAATTGGCCGGCATAAATTGAATcaacatgtaaaattt---------------------------------------------------------------------------------------------aggagacacgcaaaaatctgtatttcaggctcctcttaaacaatcaattctggtttccctcgagcccatattactgtttggtgtgctatgaagaggctgtagatt-aaagtaagtctatgttctctagtttgtcactgttcccacctaggtacgtcacttactcaggtcACACCCTTTACCTCTGTAAATATTTTAGTTAACAATTCCTGTCGTATTGT----------AAAGATTTCAAGGTTTTTAAGACAGTTGAAAA----TTATAGTATGTAGT-TATATATTA-ATCCCTTAATAATGGAGTTGACTTTTAGAATTTAGAAGTTGTTTGTTAAAACAACGATTTTTCTT----TATGCCATAAATAATCATCTCATTAGAATGTTTATAAGCCTTTTTAGGTTAATCGT
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59005773 446 + 153482349 CAACACAGGAAAGCAAAATTGGCCGGCATAAATTGAATcaacatgtaaaattt---------------------------------------------------------------------------------------------aggagacatgcaaaaatctgtatttcaggctcctcttaaacaatcaattctggtttcccttgagcccatattactgtttg--gtgctgtgaagaggctgtagatt-aaaataagtctatattctttagtttgtcactgtgcccacctaggtacttcacttactcaggtcACACCCTTTACCTCTGTAAATATTTTAGTTAACAATTCCTGTCGTATTGT----------AAAGATTTCAAGGTTTTTAAGACAGTTGATAA----TTATAGTATGTAGTCTCTATATTA-ATCCTTTAATAATGGACTTGACTTTTAGAATTTAGAAGTTGTTTGTTAAAACAACGATTTTTCTT----TATGCCATAAATAATCATCTCATTAAAATGCTTATAAGCCTTTTTAGGTTAATCGT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                48093438 444 + 100215132 CAACAC-----AGCAAAATTGGCCGGCATAAATTTAATcaacatgtaaaattt---------------------------------------------------------------------------------------------aggagacatgcaaaaatctgtatttcaggctcctcttaaacaatcaattctagtttcccttgagcccatattactgtttggtgtgttatgaagaggctgtagcttcaaagtaagtctatgttctctagtttgtcactgtgcccacctagGTACTGCACTTACTCGGGTCACACCCTTTACCTCTGTAAATATTTTAGTTAACAATTCCTGTCGTACTGT----------AAAGATTTCAAGGTTTTTCAGAAAGTTGATAA----TTATAGTATGTAGTCTATATATTA-ACCCCTTAATAATGGAGTTGACTTTTAGAATTTAGAAGTTGTTTTTTAAAACAACTATTTTTCTT----TATGCCATAAATAATCATCTCATTAGAATGCTTATAAGCCTTTTTAGGTTAATCAT
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                 61693334 459 + 150158102 CAACACAGGAAAGCAAAGTTGGCCTGCATAAATTGAgccaacatgtaaaattt---------------------------------------------------------------------------------------------aggagacatgcaaaaatctgtatttcaggctcttcttaaataatgaaatctggtttcccttgagcccatattactgtttggtaTGCTATGAAGAGGCTATAGCTTCACGCAAAGTCTGTGGTCTCTAGTTTCCCACTCTCCCCACCTAGG-----TACTAACTCAGGTCACATCCTTTGCCTCTGTAAATATTTTAGTTAACAACTCCTGTCATATAGTATATTTTGGTAGAGATTTCAAGGTTTTCAAGATAGTTGATAGCTGTTTATTATATATAGTATATATTTTGTAGTCCTTAATAA-GGAGTTGACTTTTAGAATTTAGAA---GTTTTTTAAAACAATGATTTTTCTTTATATATACCATACATAATAATCACATTAGAAGGCCTATAGGCTTTTTTAGGTTAATTAT
i rheMac3.chr8                 C 0 C 0
s chlSab2.chr8                 53287709 552 + 139301422 CAACACAGGAAAGCAAAGTTGGCCTACATAAATTGAGCCAACATGTAAAATTTACATAACAGGTATTCAGTTTATATTTGATGAATACATATTTTAAAAATGAATAAATGCAGTTGGGAAGTTTAATATTTTAAAAACAGATACAAAggagacatgcaaaaatctgtatttcaggctcttcttaaataatgcaatctggtttcccttgagcccatattactgtctggtatgctatgaagaggctgtagcttcacgcaaagtctgtggtctccagtttgccactgtgcccacctagg-----cacttactcaggtcacatcctttgcctctgtaaatattttagttaacaactcctgTCATATAGTATATTTTGGCAAAGATTTCAAGGTTTTCAAGACAGTTGATAGCTGTTTATTATATATAGTGTATATTTTATAGTCCTTAATAATGGAGTTGACTTTTAGAATTTAGAA---GTTTTTTAAAACAATGATTTTTCTTTATATATACCATACATAATAATCACATTAGAAGGCCTATAGGC-TTTTCAGGTTAATTAT
i chlSab2.chr8                 I 56 C 0
e takFla1.KE120500               510640  77 +    663757 I
e fr3.chr9                      3740898 144 -  13922460 I
e macEug2.GL108065                80522 2890 -    187545 I
e sarHar1.chr5_GL861647_random   312559 5503 -   4230514 I
e calJac3.chrUn_GL286234          16300   0 +    110629 C
e taeGut2.chr1A                23686553 5559 +  73657157 I
e macFas5.chr8                 58365559   0 + 146850525 C
e saiBol1.JH378179              2754928  13 +  10880647 I

a score=582579.000000
s hg38.chr8_KI270814v1_alt         24006 530 +    141812 TGTTATATTTGGATAGGTTATGAATATTG---CAGAAAAG---ATATCTTTCTCCTGAGCGTTGTCCCTTAAAATCGAAGTGATTTAGTCGCTTTTATTATGTCAAAATAATCCATATAGATAGGGTAGAATTTTTATTGATAAGTCATTGTATTTGTAGTTTTGATATTTTGCCAAAAATAGTAAGTAATTTTAAGTAGCAATGGAAATAGATACCAGAATAAAAA---------TGGATTAATGCATTTGAATAAGTAGATGTGCATTGGGGTCTTAGGATTATC------ATTATAATTGAGAATAAAATTTCATACTGAACTTTCT--------AACAGCTAAGAGAAAATTCTGTCATCTTGT-ATAGAACAAATCCCATGGACCATTCAATTATTTA-------TAAGCAATCGAAGTTCATTTGAA--GCCAGACTCTTTTAATTTAGAGCCCATTTCCTTAGCGACTTATTTGGAGCAGGAGGGCCTGACTTTGGCATTTGGGATCCTGGGACCATTGATAG-----AATCAGGCAAGTTTGTGTCACCTGGAGGAAACCTCCACC
s panTro4.chr8                  54965016 529 + 143986469 TGTTATATTTGGGTAGGTTATGAATATTG---CAGAAAAG---ATATCTTTCTCCTGAGCGCTGTCCCTTAAAATCGAAGTGATTTAGTCGCTTTTATTATGTCAAAATAATCCATATAGATAGGGTAGAATTTTTATTGATAAGTCATTGTATTTGTAGTTTTGATATTTTGCCAAAAATAGTAAGTAATTTTAAGTAGCAATGGAAATAGATACCAGAATAAAAA---------TGGATTAATGCATTTGAAGAAGTAGATGTGCATTGGGGTCTTAGGATTATC------ATTATAATTGAGAATAAAATTTCATACTGAACTTTCT--------AACAGCTAAGAGAAAATTCTGTCATCTTGT-ATAGAACAAATCCCATGGACCATTCAATTATTTA-------TAAGCAATCAAAGTTCATTTGAA--GCCAGACTCTTTTAATTTAGAGCCCATTTCCTTAGCGACTTATTTGGAGCAGGAGGGCCTGACTTTGGCATTTGAGATCCT-GGACCATTGATAG-----AATCAGGCAAGTTTGTGTCACCTGGAGGAAACCTCCACC
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59006219 530 + 153482349 TGTTATATTTGGATAGGTTATGAATATTG---CAGAAAAC---ATATCTTTCTCCTGAGCATTGTCCCTTAAAATCGAAGTGATTTAGTGGCTTTTATTATGTCAAAATAATCCATATAGATAGGGTAGAATTTTTATTGATAAGTCATTGTATTTGTAGTTTTGATATTTTGCCAAAAATAGTAAGTAATTTTAAGTAGCAATGGAAATAGATACCAGAATAAAAA---------TGGATTAATGCATTTGAAGAAGTAGATGTGCATTGGGGTCTTAGGATTATC------ATtataattgagaataaaatttcatactgaactttct--------aacagctaagggaaaaTTCTGTCATCTTGT-GTAGAAGAACTCCCATGGACCATTCAATTATTTA-------TAAGCAATCGAAGTTCATTTGAA--GCTAGACTCTTTTAATTTAGAGCCCATTTCCTTAGCGACTTATTTGGAGCAGGAGGGCCTGACCTTGGCTTCTGGGATCCTGGGACCATTGATAG-----AATCAGGCAAGTTTGTGTCACCTGGAGGAAACCTCCACC
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48093882 528 + 100215132 TGTTATATTTGGATAGGTTATGAATTTTG---CAGAAA-----ACATCTTTCTCCTGAGCATTGTCCCTTAAAATCGAAGTGATTTAGTGGCTTTTATTATGTCAAAATAATCCATGTAGATAGGGTAGAATTTTTACTGATAAGTCATTGTATTTGTAGTTTTGATATTTTGCCAAAAATAGTAAGTAATTTTAAGTAGCAATAGAAATAGATACCAGAATAAAAA---------TGGATTAATGCATTTGAAGAAGTAGATGTGCATTGGGGTCTTAGGATTATC------ATTATAATTGAGAATAAAATTTCATACTGAACTTTCT--------AACAGCTAAGAGAAAATTCTGCCATCTTGT-ATAGAAGAAATCCCATGGACCATTCAATTATTTA-------TAAGCAGTCGAAGTTCATTTGAA--GCCAGACTCTTTTAATTTAGAGCCCATTTCCTTAGTGACTTATTTGGAGCAGGAGGGCCTGACTTTGGCATCTGGGATCCTGGGACCATTAATAG-----AATCAGGCAACTTTGTGTCACGTGGAGGAAACCTCCACC
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                  61693793 532 + 150158102 GGTTATATTTGGATAGGTTATGCATATTG---CAGAACACATTATATATTTCTCCTCAGCATTGTCCCTTAAAATGGAAGTGATTTAGTGGCTTTTATTATGCTAAAATAACCCATATAGTTCAGCTAGAAATTGTATTGATAAGCCATTGCATTTGTATTTCTGATATTTTGCCAAAAATAAAAGATAATTTTAAGTAGCAATGAAAATAGAAACCAGAATAAAAA---------TGGATTAATGCATTTTAAGAAGTAGATATGCATTAGGGTCCTAGGATTATCAATATCATTATAATTGAGAATAAAATTTCATACTGAACTTTCT--------AACAGCT-----AAAATTCTGTGATCCTGTCATAGGAGAAACCTAAGGGACCATTTAA----TAA-------TAAGCAATCAAAATTCATTTGAA--GCCT----CTTTTAATTCAGAGCCCATTTCCTTAGTGACCTACTTGGAGCAGGAGTGCCTGACTTTGGCAGCTGGGATCCTGGGCCCATTGATAGAAAATAATCAAGTGAGTTTGTGTCACCTGGAGGAAACCCCTACC
i rheMac3.chr8                 C 0 C 0
s chlSab2.chr8                  53288261 533 + 139301422 GGTTATATTTGGATAGGTTATGCATATTG---CAGAACACATTATATATTTCTCCTCAGCATTGTCCCTTAAAATGGAAGTGATTTAGTGGCTTTTATTATGCTAAAATAACCCATATAGTTCAGCTAGAAATTGTATTGATAAGCCATTGCATTTGTATTTCTGATATTTTGCCaaaaataaaagataattttaagtagcaatgaaaatagaaaccagaataaaaa---------tGGATTAATGCATTTTAAGAAGTAGATATGCATTAGGGTCCTAGGATTATAAAT---ATTATAATTGAGAATAAAATTTCATACTGAACTTTCT--------AACAGCT-----AAAATTCTGTGATCCTGTCATAGGAGAAACCCAATGGACCATTTAA----TAA-------TAAGCAATCAAAATTCATTTGAA--GCCTATCCCTTTTAATTCAGAGCCCATTTCCTTAGTGACCTACTTGGAACAGGAGTGCCTGACTTTGGCAGCTAGGATCCTGGGCCCATTGATAGAAAATAATCAAGTGAGTTTGTGTCACCTGGAGGAAACCCCTACC
i chlSab2.chr8                 C 0 C 0
s monDom5.chr8                 174078966 466 + 312544902 tgctacctctacaaaagaaacataaattggaacaggaaag---acttaaatgtccacaaattactcccttaa---------gattt-----cttctatgatatggcaaca----gtaggaaggggttgggacatttgtagatgag-------atttat--------taTGTAGACATGAAGAG-AAGTAAGCT-------------AAGCACATAAGAGATTTGTAGTTTTATTTCTGTATCTTTTTCTTTTTATATGGAAATGCTTGTTTGG---TTTGGTTTGTA------A----AATTTGGAATAAAA----------AAATTGCTGCCAAAAAAGCAGCTA----AGGAATTGATATTCATAT-ATAAATAAAATGTTACATAAAATTATATGATTTACTATATGTACATAGTTATA--TCATTTTAAATGCCG---TTTATCATATTTGTGTGTATACATGGATGTGCTTATATAGAGAAACAAGATATGATCT--------------CCAATTTCAGTAATAG-----AAGTA------TCCTAGCCATGAGAAGGAAAGTGATATA
i monDom5.chr8                 N 0 C 0
e takFla1.KE120500                510640  77 +    663757 I
e fr3.chr9                       3740898 144 -  13922460 I
e macEug2.GL108065                 80522 2890 -    187545 I
e sarHar1.chr5_GL861647_random    312559 5503 -   4230514 I
e calJac3.chrUn_GL286234           16300   0 +    110629 C
e taeGut2.chr1A                 23686553 5559 +  73657157 I
e macFas5.chr8                  58365559   0 + 146850525 C
e saiBol1.JH378179               2754928  13 +  10880647 I

a score=185530.000000
s hg38.chr8_KI270814v1_alt         24536 215 +    141812 TTTATTGGAAAGCTTT-AAAAT-----------TGTTTTCCTGAAGTTTTAATTCCTCAAA----TAGTAATGT--------TT-GCCAC-AAAAAAGTATTTTCAAATAGGGAATAGGCAAAGTTCAAGACATTTCTTGAATACTGAACAAATGATTCACAGTTTTA---CAAT------ATTTCTCA---------AACGTAGATGAT--------CATAGGATCTTTC--TGTTGGGGTAC-AGTCTTTAACTTCTGGTAAAGTAAA
s panTro4.chr8                  54965545 216 + 143986469 TTTATTGGAAAGCTTT-AAAAT-----------TGTTTTCCTGAAGTTTTAATTCCTCAAA----TAGTAATGT--------TT-GCCACAAAAAAAGTATTTTCAAATAGGGAATAGGCAAAGTTCAAGACATTCCTTGAATACTGAACAAATGATTCACAGTTTTA---CAAT------ATTTCTCA---------AACGTAGATGAT--------CATAGGATCTTTC--TGTTGGGGTAC-AGTCTTTAACTTCTGGTAAAGTAAA
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59006749 216 + 153482349 TTTATCGGAAAGCTTTAAAAAT-----------TGTTTTCCTGAAGTTTTAATTCCTCAAA----TAGTAATGT--------TT-GCCAC-AAAAAAGTATTTTCAAATAGGGAATAGGCAAAGTTCAAGACATTTCTTGAATACTGAACAAATGATTCACAGTTTTA---CAAT------ATTTCTCA---------AACGTAGATGAT--------CATAGTATCTTTC--TGCTGGGGTAC-AGTCTTTAACTTCTGGTAAAGTAAA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48094410 216 + 100215132 TTTATTGGAAAGCTTTAAAAAT-----------TGTTTTCCTGAAGTTTTAATTCCTCAAA----TAGTAATGT--------TT-GCCAC-AAAAAAGTATTTTCAAATAGGGAATAGGCAAAGTTCAAGACATTTCTTGAATACTGAACAAATGATTCACAGTTTTA---CAAT------ATTTCTCA---------AATGTAGATGAT--------CATAGGATCTTTC--TGTTGGGGTAC-AGTCTTTAACTTCTGGTAAAGTAAA
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                  61694325 205 + 150158102 TTTACTGGAAAGTTTTAAAAAC-----------TGTGCTCCTGAAATTTTAATTCCTCAAA----TGTTAG-----------TT-GCCAC--AAAACCTATTGTCAAATAAGGATTAGGCAAAGGTCAAGACATTTCTTGAATACCGGACATATAATC--CAGTTTT------AT------ATTTCTCA---------AACGTAGATGAC--------CATAGGATCTTCC--TGTTCAGGTGC-AGTC--TAACTTCTGACAAAGTAAA
i rheMac3.chr8                 C 0 I 4033
s chlSab2.chr8                  53288794 205 + 139301422 TTTATTGGAAAGTTTTTAAAAC-----------TGTGCTCCTGAAATTTTAATTCCTCAAA----TGTTAG-----------TT-GCCAC--AAAACCTATTGTCAAATAAGGATTAGGCAAAGGTCAAGACATTTCTTGAATACCGGACATATAATC--CAGTTTT------AT------ATTTCTCA---------AACGTAGATGAC--------CATAGGATCTTCC--TGTTCAGGTGC-AGTC--TAACTTCTGACAAAGTAAA
i chlSab2.chr8                 C 0 I 4669
s monDom5.chr8                 174079432 225 + 312544902 CATATATATGACTTTTATTAATCAGACCATATGTATGTTTCCTA---TGTAGTTCCATGTA----TAACAGtat--------ttaggtat-atataattatatgtataaaatgagttatatatgtgtatagcatgtgtatcataaagtttatatgact---------------at------atttgtcattatatagttacatatataactacatatacataaaaactatcattatttacatgcaagta--tggcttat------atata
i monDom5.chr8                 C 0 C 0
s oryLat2.chr15                  8991487 205 +  30000224 ttgATTAGAACATCTAAATAAT-----------TTCTTTCTGTA--CTTTACTTATATGAACATGTAttaacattgttgttgtt-gttga-taatGAGGATTTTTAGGT---------------------GTATTTTTAGTGTTCTTTATAAAACATCCTCTGTTTTAAAGCTATAAGGTAATTTCtcc---------tttgtgg--gat--------caatatatagttc--tattctgtttt-attc------tattcacagagctg-
i oryLat2.chr15                N 0 C 0
e takFla1.KE120500                510640  77 +    663757 I
e fr3.chr9                       3740898 144 -  13922460 I
e macEug2.GL108065                 80522 2890 -    187545 I
e sarHar1.chr5_GL861647_random    312559 5503 -   4230514 I
e calJac3.chrUn_GL286234           16300   0 +    110629 C
e taeGut2.chr1A                 23686553 5559 +  73657157 I
e macFas5.chr8                  58365559   0 + 146850525 C
e saiBol1.JH378179               2754928  13 +  10880647 I

a score=2621.000000
s hg38.chr8_KI270814v1_alt         24751 4 +    141812 CTTC
s panTro4.chr8                  54965761 4 + 143986469 CTTC
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59006965 4 + 153482349 CTTC
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48094626 4 + 100215132 CTTC
i nomLeu3.chr16                C 0 C 0
s monDom5.chr8                 174079657 4 + 312544902 atta
i monDom5.chr8                 C 0 C 0
s oryLat2.chr15                  8991692 3 +  30000224 -ttt
i oryLat2.chr15                C 0 C 0
e takFla1.KE120500                510640 77 +    663757 I
e fr3.chr9                       3740898 144 -  13922460 I
e macEug2.GL108065                 80522 2890 -    187545 I
e sarHar1.chr5_GL861647_random    312559 5503 -   4230514 I
e calJac3.chrUn_GL286234           16300 0 +    110629 C
e taeGut2.chr1A                 23686553 5559 +  73657157 I
e rheMac3.chr8                  61694530 4033 + 150158102 I
e macFas5.chr8                  58365559 0 + 146850525 C
e saiBol1.JH378179               2754928 13 +  10880647 I
e chlSab2.chr8                  53288999 4669 + 139301422 I

a score=165019.000000
s hg38.chr8_KI270814v1_alt         24755 147 +    141812 TGCCATTTTGA--AA--------ATTTATA---ACTGTCTT-AATGGTAATATTAATCTCA--------TATGTTACATGAATTCTATACATCTAAATACTAATTTGCATAC--------------ATTCTGTAAATC----TACTGAATAAAATGAGCCATTCTT----ATTTGAATCC--------------TGACTTT----CCTT--
s panTro4.chr8                  54965765 151 + 143986469 TGCCATTTTGA--AA--------ATTTATA---ACTGTCTT-AATGGTAATATTAATCTCA--------TACGTTATATGAATTCTATACATCTAAATACTAATTTGCATAC--------------ATTCTGTAAATC----TACTGAATAAAATGAGCCATTCTTATTCATTCGAATCC--------------TGACTTT----CCTT--
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59006969 151 + 153482349 TGCCATTTTGA--AA--------ATTTGTA---ACTGTCTT-AATGGTAATATTAATCTCA--------TACGTTATATGAATTCTATACATCTAAATACTAATTTGCATGC--------------ACTCTGTAAATC----TACTGAATAAAATGAGCCATTCTTATTCATTTGAATCC--------------TGACTTT----CCTT--
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48094630 151 + 100215132 TGCCATTTTGG--AA--------ATTTATA---ACTGTCTT-AATGGTAATATTAATCTCA--------TACATTATATGAATTCTATACATCTAAATACTAATTTGCATAC--------------ATTCTGTAAATC----TACTGAATAAAATGAGCCATTCTTATTCATTCGAATCC--------------TGACTTT----CCTC--
i nomLeu3.chr16                C 0 C 0
s macFas5.chr8                  58365559 176 + 146850525 TGCCATTTTGA--AA--------ATTTATA-----TGTTTTAAACAGTGATATTAATTATATAGATACTTACGTCACATGCATTTTATACATGTAAATACTAATTTACATACGTGCATACATTTAGATTCTGTAAATCTAAATACTTAGTAAAATGAGCCATATTTATTTATTTGAATCC--------------TGACTTT----TCTT--
i macFas5.chr8                 C 0 C 0
s calJac3.chrUn_GL286234           16300 133 +    110629 TGCCATTTTAA--AA--------ATTGGTA---A--GTCTT-------------AATCTTA--------TACTTTATATGCATTCCATACATATAAATACTAATTTGCATGC--------------ATTCTGTAAATC----TACTGAATAAAATGAGCAACTGTT----ATTTGAATCC--------------TAACATT----CCTT--
i calJac3.chrUn_GL286234       C 0 C 0
s saiBol1.JH378179               2754941 127 +  10880647 TGCCATTTTGA--AA--------ATTGGTA---A------C-------------AGTC--A--------TACTTTAAATGCATTCCATACATATAAATACTAATTTGCATAC--------------ATTCTGTAAATA----TACTGAATAAAATGAGCAATTGTT----ACTTAAATCC--------------TAACATT----CCTT--
i saiBol1.JH378179             I 13 C 0
s monDom5.chr8                 174079661 158 + 312544902 tataATCCTAT--AACTAGTTCTATATTTA---GTTGATTT-TATGTTTATACTATTTTCA--------TATGTTATATGTGTGGT-TATATATGAGC----ATATGCTTTC--------------TATTTGTAGTTG----TAC--------ATAAGCAGTTTATAT--ACATGTATCTATTTTTTCTATAtatcatttc----cctt--
i monDom5.chr8                 C 0 I 1
s oryLat2.chr15                  8991695 139 +  30000224 ttccatttcaattac--------atttctatttaatatttt-agttgt-------atttcc--------ctttttatttttatttt----ttcaaaagatCAAACTGAATTC--------------CACTTGTGAATTT---TAATGAGCAGAAGGA-------------aaacaaatct--------------tgtttttggtctctTTT
i oryLat2.chr15                C 0 C 0
e takFla1.KE120500                510640  77 +    663757 I
e fr3.chr9                       3740898 144 -  13922460 I
e macEug2.GL108065                 80522 2890 -    187545 I
e sarHar1.chr5_GL861647_random    312559 5503 -   4230514 I
e taeGut2.chr1A                 23686553 5559 +  73657157 I
e rheMac3.chr8                  61694530 4033 + 150158102 I
e chlSab2.chr8                  53288999 4669 + 139301422 I

a score=97646.000000
s hg38.chr8_KI270814v1_alt         24902 152 +    141812 TGGCTTAAAGTTTTTAAAAAA-----TTAAAGTAAAAATGACTGTGTTTTAAAAATTTGTTTC-AGTATTTCAACCCTTTTTTTTCC-----ATAGCACTTTTAAGAG---C-TAAAATTGATTTAAA-----TGTTAGCCATATGACTAG--GACTGCTATTGTCCTGTTGTG
s panTro4.chr8                  54965916 152 + 143986469 TGGCTTAAAGTTTTTAAAAAA-----TTAAAGTAAAAATGACTGTGTTTTAAAAATTTGTTTC-AGTATTTCAACCCTTTTTTTTCC-----ATAGCACTTTTAAGAG---C-TAAAATTGATTTAAA-----TGTTAGTCATATGACTAG--GACTGCTATTGTCCTGTTGTG
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59007120 152 + 153482349 TGGCTTAAAGtttttaaaaaa-----ttaaaataaaaatGACTGTGTTTTAAAAATTTGTTTC-AGTATTTCAACGCTTTTTTTTCC-----ATGGCACTTTTAAGAG---C-TAAAATTGATTTAAA-----TGTTAGTCATATGACTAG--AACTGCTATTGTCCTGTTGTG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48094781 152 + 100215132 TGGCTTAAAGTTTTTAAAAAA-----TTAAAGTAAAAATTACTATGTTTTAAAAATTTGTTTC-AGTATTTCAACCCTTTTTTTTCC-----ATAGCACTTTTAAGAG---C-TAAAATTGATTTAAA-----TGTTAGTCATATGACTAG--GACTGCTATTGTCCTGTTGTG
i nomLeu3.chr16                C 0 C 0
s macFas5.chr8                  58365735 145 + 146850525 TGGCTTAAAGTTTTT-AAAAA-----TTAAGG----AATTACTTTGTTTTAAAAATTTGCTTT---TATTTCAACCC-TCCTTTCCC-----ATGGTACGTTTAAGTG---CTTAAAATTTATTTAAA-----TATTAATCATATGACTAG--GACTTCCATTGCCCTGTTGTA
i macFas5.chr8                 C 0 C 0
s monDom5.chr8                 174079820 156 + 312544902 tggccatgatacttctattag-----tgcagtcagagatcatattaatttttttgtttgctctgaaaatattgacttacattaaact-----ttggctctattaaaaagtcc-tggtatttttcacaa-----tatcttctatctagtaat--atctcctgttatttacttgtg
i monDom5.chr8                 I 1 I 5609
s oryLat2.chr15                  8991834 160 +  30000224 CCATTAAAAGTTAATACATAACAGTTTTTAAGCTTAACAACCAGCATTTTACAAGACTGTTAC---AATATCActcatttattttccaatttaCTGTAATCTTAGATT---T-TACAGATGATTCAAAATTGGTATTAACTGTATTTATAgtaaattataatt----tatt---
i oryLat2.chr15                C 0 C 0
e takFla1.KE120500                510640  77 +    663757 I
e fr3.chr9                       3740898 144 -  13922460 I
e macEug2.GL108065                 80522 2890 -    187545 I
e sarHar1.chr5_GL861647_random    312559 5503 -   4230514 I
e calJac3.chrUn_GL286234           16433   0 +    110629 C
e taeGut2.chr1A                 23686553 5559 +  73657157 I
e rheMac3.chr8                  61694530 4033 + 150158102 I
e saiBol1.JH378179               2755068   0 +  10880647 C
e chlSab2.chr8                  53288999 4669 + 139301422 I

a score=100651.000000
s hg38.chr8_KI270814v1_alt         25054 149 +    141812 TATACTGTACTCTACTTAATGT---CAccgtggattatgt-gatgc--ctctattttatgtatca------ataaaagaatgttt-aaatgctgccaaatatagttgtaa-aaataatgaattataaataggatttcagcatcagatctgttaaaatacgaga
s panTro4.chr8                  54966068 145 + 143986469 TATACTGTACTCTACTTAATGT---CAccatggattatgt-gatgc--ctctattttatgtatca------ataaaagaatgttt-aaatgctgccaaatatagttgtaa-aaat----aattataaataggatttcagcatcagatctgttaaaatacgaga
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59007272 149 + 153482349 TATACTGTATTCTACTTAATGT---CACTGTGgattatgt-gatgc--ctccattttatgtatca------ataaaagaatgttt-aaatgctgccaaatacagttgtaa-aaataatgaattataaataggatttcaacatcagatatgttaaaatatgcga
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48094933 146 + 100215132 TATATTGTATTCTACTTAATGT---CAccgtggattatgt-gatgc--ctctattttatgtatca------ataaaagaatgttt-aaatgctgccaaatata---gtaa-aaataatgaattataaataggatttcaacatcagatatgttaaaatatgaga
i nomLeu3.chr16                C 0 C 0
s macFas5.chr8                  58365880 156 + 146850525 TATACCATATTCCACTTGATGTAGCCACTGTGgattgtgt-gatgctgccttattttatgtatca------ataaaataatgtttaaaatgctgcaaaatatagttgtaataaataatgaattataagcagcattttaatgtcagagatgttgaaatatgaga
i macFas5.chr8                 C 0 C 0
s oryLat2.chr15                  8991994 125 +  30000224 --tccttttttctttccatttt--------ttgaccatttctattc--ct---ttttGTGTTCCAGGTCTTATCAATTAAtctga-aa--------aaatatg-----aa-aaatgaaaaataatatgTAATGTTAGAG----AGGAATGTTTACACAT----
i oryLat2.chr15                C 0 C 0
e takFla1.KE120500                510640  77 +    663757 I
e fr3.chr9                       3740898 144 -  13922460 I
e macEug2.GL108065                 80522 2890 -    187545 I
e sarHar1.chr5_GL861647_random    312559 5503 -   4230514 I
e calJac3.chrUn_GL286234           16433   0 +    110629 C
e monDom5.chr8                 174079976 5609 + 312544902 I
e taeGut2.chr1A                 23686553 5559 +  73657157 I
e rheMac3.chr8                  61694530 4033 + 150158102 I
e saiBol1.JH378179               2755068   0 +  10880647 C
e chlSab2.chr8                  53288999 4669 + 139301422 I

a score=10625.000000
s hg38.chr8_KI270814v1_alt         25203 13 +    141812 aactgtgcacctt
s panTro4.chr8                  54966213 13 + 143986469 aactgtgcacctt
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59007421 13 + 153482349 aactgtgcacctt
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48095079 13 + 100215132 aactgtgcacctt
i nomLeu3.chr16                C 0 C 0
s macFas5.chr8                  58366036 13 + 146850525 aaatgagcatctt
i macFas5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    318062 13 -   4230514 AACTATACAATGT
i sarHar1.chr5_GL861647_random I 5503 C 0
s oryLat2.chr15                  8992119 12 +  30000224 AACTGCTTATAT-
i oryLat2.chr15                C 0 C 0
e takFla1.KE120500                510640 77 +    663757 I
e fr3.chr9                       3740898 144 -  13922460 I
e macEug2.GL108065                 80522 2890 -    187545 I
e calJac3.chrUn_GL286234           16433  0 +    110629 C
e monDom5.chr8                 174079976 5609 + 312544902 I
e taeGut2.chr1A                 23686553 5559 +  73657157 I
e rheMac3.chr8                  61694530 4033 + 150158102 I
e saiBol1.JH378179               2755068  0 +  10880647 C
e chlSab2.chr8                  53288999 4669 + 139301422 I

a score=64435.000000
s hg38.chr8_KI270814v1_alt         25216 126 +    141812 agaat---cattgaaatacggTGTT-ATCTCTA--ACCTTTGAAACATACCTCAAAGGA------GGTATAATTGT-------ACCA-------------TTTTACTTAATT---AAAATGTTGTC-----------TTCATTAAGTAGTAG---------TAATAATTataatatctaac
s panTro4.chr8                  54966226 126 + 143986469 agaat---cattgaaatacggTGTT-ATCTCTA--ACCTTTGAAACATACCTCAAAGGA------GGTATAATTGT-------ACCA-------------TTTTACTTAATT---AAAATGTTGTC-----------TTCATTAAGTAGTAG---------Taataattatgatatctaac
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59007434 126 + 153482349 agaat---cattgaaagacagTGTT-ATCTCTA--ACCTTTGAAACAGACCTCAAAGGA------GGTATAATTGT-------ACCA-------------TTTTACTTAATT---AAAATGTTGTC-----------TTCATTAAGTAGTAG---------TAATAATTataatatctaac
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48095092 126 + 100215132 agaat---cattgaaatacagTGTT-ATCTCTA--ACCTTTGAAACATACCTCAAAGGA------GGTATAATTGT-------ACCA-------------TTTTACTTAATT---AAAATGTTGTC-----------TTCATTAAGTAGTAG---------TAATAATTTtaatatctaac
i nomLeu3.chr16                C 0 C 0
s macFas5.chr8                  58366049 126 + 146850525 agaat---cattgaaatacagTCTT-ATCTCGA--ACCTTTAAAACATAGCACAAAGGA------AGTGTAATGGT-------ACCA-------------TTTTACCTAATT---AAGATGTTGTC-----------TTTAATAAGTAGTAG---------TAATAATTATAatatctagc
i macFas5.chr8                 C 0 C 0
s monDom5.chr8                 138184688 109 - 312544902 --agtgaaatctgaaataaTCTCTTAATTTTTA--Accttcaaaattcccatgaatggc------ttcattttatt-------tcct-------------ctcttttctaat---taaacattttt-----------------------ctt---------taagcattagtat-------
i monDom5.chr8                 n 5609 C 0
s sarHar1.chr5_GL861647_random    318075 121 -   4230514 --AGT---ATTTGCAATAAGGCGTTCATGg-----------agaatacacacatatgta------cacatgtacttatacaaatata-------------caatattCAAATGTGTAAATGTTTTT-----------CTAAGGCAgttgctt---------tataaactattttgt-----
i sarHar1.chr5_GL861647_random C 0 C 0
s oryLat2.chr15                  8992131 167 +  30000224 AAAGC---GGCTGAACGGtggcgta-gtggttagcgctcttgcctcacacagcaagaaggcccccggttcaagtcc-------acCAATGGgagatctttctgtgtggagtt---tgcatgttttccacgTGCAAACTTCAATAAatagaagaagatgaatgaatgattatGGTATATAAA
i oryLat2.chr15                C 0 I 3
e takFla1.KE120500                510640  77 +    663757 I
e fr3.chr9                       3740898 144 -  13922460 I
e macEug2.GL108065                 80522 2890 -    187545 I
e calJac3.chrUn_GL286234           16433   0 +    110629 C
e taeGut2.chr1A                 23686553 5559 +  73657157 I
e rheMac3.chr8                  61694530 4033 + 150158102 I
e saiBol1.JH378179               2755068   0 +  10880647 C
e chlSab2.chr8                  53288999 4669 + 139301422 I

a score=26141.000000
s hg38.chr8_KI270814v1_alt         25342 157 +    141812 aatta--ttgagccattatttgtgccag-----gaactgttacaaatacttggcatagattcccaattaggtatcacagtgatgtcctgtgagataac-tactatattcatctccacgttattgatgagaaaattgaggca----cagaaaggttaagtgatagct----cat
s panTro4.chr8                  54966352 157 + 143986469 aatta--ttgagccattatttgtgccag-----gaacagttacaaatacttggcatagattcccaattaggtatcacagtgatgtcctgtgagataac-tactatattcatctccacgttattgatgagaaaattgaggca----cagaaaggttaagtgatagct----cat
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59007560 157 + 153482349 aatta--ctgagccattattagtgccag-----gaacagttacaaatacttagcatagattcccaattaggtatcatagtgatgtcctgtgagataac-tactatattcatctccacgttattgatgagaaaattgaggca----cagaaaggttaagtgatagct----cat
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48095218 157 + 100215132 aatta--ctgagccattatttgtgccag-----gaacagttacaaatacttagcacagattctgaattaggcatcatagtgatgtcctgtgagataac-tactatattcatctccacgttattgatgagaaaattgagaca----cagaaaggttaagtgatagct----cgt
i nomLeu3.chr16                C 0 C 0
s monDom5.chr8                 138184797 113 - 312544902 ------------tcgatatttttagggggtgtaaaagtattat-tctgttttatttaattact-aattaagtacagtattg-------------------tCAAAAATATTTTTCAC-CTgtggat----------------------agaattcagggcctggaa----cat
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    318196 111 -   4230514 aatt-------gtcaataCTCTTAGTGG----AAAAAAGTTGT---TATTAGACTTAACAGCCAAACTTGGTGATGCATAG--------------------CAGTAATCCCATATAC-TAGT---------------------------GAGGTCTAAGGCTGGCAGTTGTAT
i sarHar1.chr5_GL861647_random C 0 C 0
s oryLat2.chr15                  8992301 145 +  30000224 AATCAAGTTGAAAAGACATTAGTA---------ACACTGTTGTCACTACAAAATGAACATCACAAATCAC-TATCATTTAG------TATGAATGgatgtaatacatttttttatgtcctgtttttttacatgttaaagtATTTTCAGAAAAGCCTGTTTA------------
i oryLat2.chr15                I 3 C 0
e takFla1.KE120500                510640  77 +    663757 I
e fr3.chr9                       3740898 144 -  13922460 I
e macEug2.GL108065                 80522 2890 -    187545 I
e calJac3.chrUn_GL286234           16433   0 +    110629 C
e taeGut2.chr1A                 23686553 5559 +  73657157 I
e rheMac3.chr8                  61694530 4033 + 150158102 I
e macFas5.chr8                  58366175   0 + 146850525 C
e saiBol1.JH378179               2755068   0 +  10880647 C
e chlSab2.chr8                  53288999 4669 + 139301422 I

a score=34175.000000
s hg38.chr8_KI270814v1_alt         25499 76 +    141812 aaatgaaagactttaatgtagt--attcaagctc--aagttgaactgaatccaaaagccaaaaactttctaGTC----------AAATGG
s panTro4.chr8                  54966509 76 + 143986469 aaatgaaagactttaatgtagt--attcaagctc--aagttgaactgaatccaaaagccaaaaactttctagtc----------aaatgg
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59007717 76 + 153482349 aaatgaaagactttaatgtagt--attcaagctc--aagttgaactgaatccaaaagccaagcactttctaGTC----------AAATGG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48095375 76 + 100215132 aaatgaaagactttaatgtagt--attcaagctc--aagttgaactgaatccaaaagcccagcactttctaGTC----------AAATGG
i nomLeu3.chr16                C 0 C 0
s macFas5.chr8                  58366175 76 + 146850525 aagtgaaagatcttaaaatagt--attcaactgc--aggttcaactgaacccaaaggccaagctctttctattC----------AAATAG
i macFas5.chr8                 C 0 C 0
s monDom5.chr8                 138184910 60 - 312544902 -----aaaga----agagcaga--atttaagacc--acccttag-----------------atattttctagttatgtaacccttaataa
i monDom5.chr8                 C 0 n 0
s sarHar1.chr5_GL861647_random    318307 62 -   4230514 -----AAGGA----GAGGTGAACCAGCTGAGGTCAGAAACTGAGC----------------AAAGTTTCCATGC---CAAtctgtaataa
i sarHar1.chr5_GL861647_random C 0 I 41
s oryLat2.chr15                  8992446 53 +  30000224 ----AAAATACTGTGATTTCAT--------------GAGATTGACTTAATTTAA-----------CTTGTGATT--------GAAAATAA
i oryLat2.chr15                C 0 C 0
e takFla1.KE120500                510640 77 +    663757 I
e fr3.chr9                       3740898 144 -  13922460 I
e macEug2.GL108065                 80522 2890 -    187545 I
e calJac3.chrUn_GL286234           16433  0 +    110629 C
e taeGut2.chr1A                 23686553 5559 +  73657157 I
e rheMac3.chr8                  61694530 4033 + 150158102 I
e saiBol1.JH378179               2755068  0 +  10880647 C
e chlSab2.chr8                  53288999 4669 + 139301422 I

a score=5774.000000
s hg38.chr8_KI270814v1_alt         25575 5 +    141812 GCTAC
s panTro4.chr8                  54966585 5 + 143986469 gctac
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59007793 5 + 153482349 GCTAC
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48095451 5 + 100215132 GCTAC
i nomLeu3.chr16                C 0 C 0
s macFas5.chr8                  58366251 5 + 146850525 GTCAT
i macFas5.chr8                 C 0 C 0
s monDom5.chr8                 174085585 5 + 312544902 GCTAT
i monDom5.chr8                 I 5609 C 0
s sarHar1.chr5_GL861647_random    318410 2 -   4230514 ---GT
i sarHar1.chr5_GL861647_random I 41 C 0
s oryLat2.chr15                  8992499 5 +  30000224 GTTAT
i oryLat2.chr15                C 0 C 0
e takFla1.KE120500                510640 77 +    663757 I
e fr3.chr9                       3740898 144 -  13922460 I
e macEug2.GL108065                 80522 2890 -    187545 I
e calJac3.chrUn_GL286234           16433 0 +    110629 C
e taeGut2.chr1A                 23686553 5559 +  73657157 I
e rheMac3.chr8                  61694530 4033 + 150158102 I
e saiBol1.JH378179               2755068 0 +  10880647 C
e chlSab2.chr8                  53288999 4669 + 139301422 I

a score=33892.000000
s hg38.chr8_KI270814v1_alt         25580 66 +    141812 TCTTTTA-----TTAATGTAGTGACTAATACGAGCTAATAAGTGTTGCAC-TTTCTTCAGG----------GGCAAATTAGA
s panTro4.chr8                  54966590 66 + 143986469 tcttttA-----TTAGTGTAGTGACTAATACAAGCTAATAAGTGTTGCAC-TTTCTTCAGG----------GGCAAATTAGA
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59007798 66 + 153482349 TCTTTTA-----TTAGTGTAGTGACTAATACGAGCTAATAAGTGTTGGAC-TTTCTTCAGG----------GGCAAATTAGA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48095456 66 + 100215132 TTTTTTA-----TTAGTGTAGTGACTAATACGAGCTAATAAGTGTTGCGC-TTTCTTCAGG----------GGCAAATTAGA
i nomLeu3.chr16                C 0 C 0
s macFas5.chr8                  58366256 65 + 146850525 TCTTTCA-----TTGATGTAGTGAATAATAAGAGCTAATAAATATTGT-T-TCTTTTCAGG----------GGGAAATTAAA
i macFas5.chr8                 C 0 I 4
s monDom5.chr8                 174085590 75 + 312544902 TTCTTC-------CATCATATGGAGAAATAAGAGTTAAAGTACATTTCATATTTCTTGAGGTAACAGTAGTGGCCACATAGT
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    318412 75 -   4230514 TTTGTT-------CATTAAATCCATCAATAAGAGttaatgcatattttatatttctttaggtAACAGTAGTAGCCACATATT
i sarHar1.chr5_GL861647_random C 0 C 0
s anoCar2.chrUn_GL344195           43411 66 +     59083 TCTCTGG-----TTCCTGTGGTAGGAGGCACGAATCAAAGGAGGTTGGGG-TAATCTCAGG----------ATAAAATTGGA
i anoCar2.chrUn_GL344195       N 0 I 11
s oryLat2.chr15                  8992504 63 +  30000224 TCCCATGGAGCCTTAACTGAATTATTAAAATGATCT--------CTATAA-GCCTTTCAAA----------TGTCAGTGATA
i oryLat2.chr15                C 0 C 0
e takFla1.KE120500                510640 77 +    663757 I
e fr3.chr9                       3740898 144 -  13922460 I
e macEug2.GL108065                 80522 2890 -    187545 I
e calJac3.chrUn_GL286234           16433  0 +    110629 C
e taeGut2.chr1A                 23686553 5559 +  73657157 I
e rheMac3.chr8                  61694530 4033 + 150158102 I
e saiBol1.JH378179               2755068  0 +  10880647 C
e chlSab2.chr8                  53288999 4669 + 139301422 I

a score=15156.000000
s hg38.chr8_KI270814v1_alt         25646 30 +    141812 TGTTTCGA----------------AGGCAGAGGAAGGGCATGCTAT
s panTro4.chr8                  54966656 30 + 143986469 TGTTTTGA----------------AGGCAGAGGAAGGGCATGCTAT
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59007864 30 + 153482349 TGTTTTGA----------------AGGCAGAGGAAGAGCGTGCTAT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48095522 30 + 100215132 TGTTTTGA----------------AGGCAGAGGAAGAGCATGCTAG
i nomLeu3.chr16                C 0 C 0
s macFas5.chr8                  58366325 30 + 146850525 TGTTTTGA----------------AGGCAGAGGAATAGCATGCTAT
i macFas5.chr8                 I 4 C 0
s monDom5.chr8                 174085665 46 + 312544902 TATTTTGGCAGTGATTTATAGTCTGGGCATAAGAATCCTAATGCAT
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    318487 46 -   4230514 TATTTTGGCAATGATTTATAGTTTAGCTATAAGAATAATAAtgcat
i sarHar1.chr5_GL861647_random C 0 C 0
s amaVit1.KB277496                  6840 30 -     10329 tgttctgc----------------caGCTGAGGCTTGTTGGCCTAT
i amaVit1.KB277496             N 0 C 0
s anoCar2.chrUn_GL344195           43488 28 +     59083 TGTCCTGA----------------CAGAGAAAGA--GTCAAATAAC
i anoCar2.chrUn_GL344195       I 11 I 2
s oryLat2.chr15                  8992567 25 +  30000224 --TATTTA-------------------CAGTAGAATGTTACAATTT
i oryLat2.chr15                C 0 C 0
e takFla1.KE120500                510640 77 +    663757 I
e fr3.chr9                       3740898 144 -  13922460 I
e macEug2.GL108065                 80522 2890 -    187545 I
e calJac3.chrUn_GL286234           16433  0 +    110629 C
e taeGut2.chr1A                 23686553 5559 +  73657157 I
e rheMac3.chr8                  61694530 4033 + 150158102 I
e saiBol1.JH378179               2755068  0 +  10880647 C
e chlSab2.chr8                  53288999 4669 + 139301422 I

a score=4366.000000
s hg38.chr8_KI270814v1_alt         25676 3 +    141812 TTA
s panTro4.chr8                  54966686 3 + 143986469 TTA
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59007894 3 + 153482349 TTA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48095552 3 + 100215132 TTA
i nomLeu3.chr16                C 0 C 0
s macFas5.chr8                  58366355 3 + 146850525 TTA
i macFas5.chr8                 C 0 C 0
s monDom5.chr8                 174085711 2 + 312544902 -TT
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    318533 3 -   4230514 att
i sarHar1.chr5_GL861647_random C 0 C 0
s pseHum1.KB221193               9788748 3 +  32995986 TTA
i pseHum1.KB221193             N 0 C 0
s takFla1.KE120500                510717 3 +    663757 TTA
i takFla1.KE120500             I 77 C 0
e oryLat2.chr15                  8992592 0 +  30000224 C
e fr3.chr9                       3740898 144 -  13922460 I
e anoCar2.chrUn_GL344195           43516 2 +     59083 I
e macEug2.GL108065                 80522 2890 -    187545 I
e amaVit1.KB277496                  6870 0 -     10329 C
e calJac3.chrUn_GL286234           16433 0 +    110629 C
e taeGut2.chr1A                 23686553 5559 +  73657157 I
e rheMac3.chr8                  61694530 4033 + 150158102 I
e saiBol1.JH378179               2755068 0 +  10880647 C
e chlSab2.chr8                  53288999 4669 + 139301422 I

a score=-39369.000000
s hg38.chr8_KI270814v1_alt         25679 19 +    141812 ATGTTT-----------------ACAATCAC--A---TG--------------AA-
s panTro4.chr8                  54966689 19 + 143986469 ATGTTT-----------------ACAATTAC--A---TG--------------AA-
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59007897 19 + 153482349 ATGTTT-----------------ACAATTAC--A---TG--------------AA-
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48095555 19 + 100215132 ATGTTT-----------------ACAATTAC--A---TG--------------AA-
i nomLeu3.chr16                C 0 C 0
s macFas5.chr8                  58366358 19 + 146850525 TTGTTT-----------------GCAATTAC--A---TG--------------AA-
i macFas5.chr8                 C 0 C 0
s monDom5.chr8                 174085713 21 + 312544902 ATGTTA-----------------GAAATGACTAG---CA--------------AG-
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    318536 19 -   4230514 ttatta-----------------aaaattat--a---ct--------------aa-
i sarHar1.chr5_GL861647_random C 0 C 0
s pseHum1.KB221193               9788751 22 +  32995986 ATCTTG-----------------AGATTTGC--ACAGTG--------------AA-
i pseHum1.KB221193             C 0 I 8
s amaVit1.KB277496                  6870 22 -     10329 GTGGTG-----------------GGTACCGC--AGCCTG--------------AA-
i amaVit1.KB277496             C 0 I 9
s anoCar2.chrUn_GL344195           43518 18 +     59083 ----TA-----------------AAGAAAAT--AATATC--------------AA-
i anoCar2.chrUn_GL344195       I 2 C 0
s takFla1.KE120500                510720 42 +    663757 ATGTCTCTCAAACACCTCAAAATGTAGTCAT--A---TTGC---------CTAAAT
i takFla1.KE120500             C 0 C 0
s oryLat2.chr15                  8992592 13 +  30000224 ------------------------TTGTTCT--A---TT--------------AAA
i oryLat2.chr15                C 0 C 0
s astMex1.KB882082               3904344 28 -   8876373 -----------------------ATAGTCAC--A---ATTTTGTAGGACGTTTAAG
i astMex1.KB882082             N 0 C 0
e fr3.chr9                       3740898 144 -  13922460 I
e macEug2.GL108065                 80522 2890 -    187545 I
e calJac3.chrUn_GL286234           16433  0 +    110629 C
e taeGut2.chr1A                 23686553 5559 +  73657157 I
e rheMac3.chr8                  61694530 4033 + 150158102 I
e saiBol1.JH378179               2755068  0 +  10880647 C
e chlSab2.chr8                  53288999 4669 + 139301422 I

a score=-93024.000000
s hg38.chr8_KI270814v1_alt         25698 42 +    141812 TCA--TGTATGTATGTCTTGAGAGAGTAGGCTAAAC----------TTCCCTGG
s panTro4.chr8                  54966708 42 + 143986469 TCA--TGTATGTATGTCTTGAGATAGTAGGCTAAAC----------TTCCCCGG
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59007916 42 + 153482349 TCA--TGTATGTATGTCTTGAGATAGTGGGCTAAAC----------TTCCCTGG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48095574 42 + 100215132 TCA--TGTATGTATGTCTTGAGATAGTGGGCTAAGC----------TTCCCTGG
i nomLeu3.chr16                C 0 C 0
s macFas5.chr8                  58366377 38 + 146850525 TCA--T---TGTATGTTTTGAGATAGTGGACTAAAC----------TCCTCT-C
i macFas5.chr8                 C 0 C 0
s monDom5.chr8                 174085734 36 + 312544902 CAG--T---TGTACAGTTTGGATTGTT---TCACAC----------TACTAATG
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    318555 39 -   4230514 CAA--T---GGtacaattttgattattatagTACAT----------TGTCAAAT
i sarHar1.chr5_GL861647_random C 0 C 0
s geoFor1.JH739914               5157126 39 -   7168866 TCA--TATCTGTTTATCaaaaaaaaCTGAAGTTATC----------CCTGT---
i geoFor1.JH739914             N 0 I 12
s pseHum1.KB221193               9788781 39 +  32995986 TCG--tatctgtttattaaaaaagccTGAAATTATC----------CCTGG---
i pseHum1.KB221193             I 8 I 12
s amaVit1.KB277496                  6901 39 -     10329 TCAGCTGTCTGCCTGTGTTAACAGAACGTGTTTAAT----------TTC-----
i amaVit1.KB277496             I 9 C 0
s anoCar2.chrUn_GL344195           43536 32 +     59083 ------TTTTATTCTGTGATACTGATTGAATTTCAT----------TG------
i anoCar2.chrUn_GL344195       C 0 C 0
s takFla1.KE120500                510762 22 +    663757 --------------GCATGGATATATTGTAACAAAT------------------
i takFla1.KE120500             C 0 C 0
s oryLat2.chr15                  8992605  9 +  30000224 --------------ACgtgaatt-------------------------------
i oryLat2.chr15                C 0 C 0
s astMex1.KB882082               3904372 32 -   8876373 --------------ACGTTTAAGGAATGCTGCATACATTTCCCTCT--------
i astMex1.KB882082             C 0 C 0
e fr3.chr9                       3740898 144 -  13922460 I
e macEug2.GL108065                 80522 2890 -    187545 I
e calJac3.chrUn_GL286234           16433  0 +    110629 C
e taeGut2.chr1A                 23686553 5559 +  73657157 I
e rheMac3.chr8                  61694530 4033 + 150158102 I
e saiBol1.JH378179               2755068  0 +  10880647 C
e chlSab2.chr8                  53288999 4669 + 139301422 I

a score=4600.000000
s hg38.chr8_KI270814v1_alt         25740 2 +    141812 AA
s panTro4.chr8                  54966750 2 + 143986469 AA
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59007958 2 + 153482349 AA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48095616 2 + 100215132 AA
i nomLeu3.chr16                C 0 C 0
s macFas5.chr8                  58366415 2 + 146850525 AG
i macFas5.chr8                 C 0 C 0
s monDom5.chr8                 174085770 2 + 312544902 AA
i monDom5.chr8                 C 0 I 9
s sarHar1.chr5_GL861647_random    318594 2 -   4230514 AA
i sarHar1.chr5_GL861647_random C 0 I 6
s araMac1.KE026486                  2914 2 -     24340 AA
i araMac1.KE026486             N 0 C 0
s astMex1.KB882082               3904404 2 -   8876373 GA
i astMex1.KB882082             C 0 C 0
e oryLat2.chr15                  8992614 0 +  30000224 C
e takFla1.KE120500                510784 0 +    663757 C
e fr3.chr9                       3740898 144 -  13922460 I
e anoCar2.chrUn_GL344195           43568 0 +     59083 C
e pseHum1.KB221193               9788820 12 +  32995986 I
e macEug2.GL108065                 80522 2890 -    187545 I
e geoFor1.JH739914               5157165 12 -   7168866 I
e amaVit1.KB277496                  6940 0 -     10329 C
e calJac3.chrUn_GL286234           16433 0 +    110629 C
e taeGut2.chr1A                 23686553 5559 +  73657157 I
e rheMac3.chr8                  61694530 4033 + 150158102 I
e saiBol1.JH378179               2755068 0 +  10880647 C
e chlSab2.chr8                  53288999 4669 + 139301422 I

a score=7457.000000
s hg38.chr8_KI270814v1_alt         25742 2 +    141812 AA
s panTro4.chr8                  54966752 2 + 143986469 AA
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59007960 2 + 153482349 AA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48095618 2 + 100215132 AG
i nomLeu3.chr16                C 0 C 0
s macFas5.chr8                  58366417 2 + 146850525 TA
i macFas5.chr8                 C 0 C 0
s monDom5.chr8                 174085781 2 + 312544902 TT
i monDom5.chr8                 I 9 C 0
s sarHar1.chr5_GL861647_random    318602 2 -   4230514 TG
i sarHar1.chr5_GL861647_random I 6 C 0
s macEug2.GL108065                 83412 2 -    187545 AG
i macEug2.GL108065             I 2890 C 0
s falChe1.KB398074               4262846 2 -   7151304 aa
i falChe1.KB398074             N 0 C 0
s falPer1.KB391107               2215463 2 -   3101084 aa
i falPer1.KB391107             N 0 C 0
s ficAlb2.chr1A                 24320727 2 +  74947036 aa
i ficAlb2.chr1A                N 0 C 0
s zonAlb1.KB913045              12581453 2 +  16390125 aa
i zonAlb1.KB913045             N 0 C 0
s geoFor1.JH739914               5157177 2 -   7168866 ag
i geoFor1.JH739914             I 12 C 0
s taeGut2.chr1A                 23692112 2 +  73657157 AA
i taeGut2.chr1A                I 5559 C 0
s pseHum1.KB221193               9788832 2 +  32995986 aa
i pseHum1.KB221193             I 12 C 0
s anaPla1.KB743807                  5446 2 +     81650 aa
i anaPla1.KB743807             N 0 C 0
s anoCar2.chrUn_GL344195           43568 2 +     59083 CA
i anoCar2.chrUn_GL344195       C 0 C 0
s fr3.chr9                       3741042 2 -  13922460 AA
i fr3.chr9                     I 144 C 0
s takFla1.KE120500                510784 2 +    663757 AA
i takFla1.KE120500             C 0 C 0
e araMac1.KE026486                  2916 0 -     24340 C
e astMex1.KB882082               3904406 0 -   8876373 C
e oryLat2.chr15                  8992614 0 +  30000224 C
e amaVit1.KB277496                  6940 0 -     10329 C
e calJac3.chrUn_GL286234           16433 0 +    110629 C
e rheMac3.chr8                  61694530 4033 + 150158102 I
e saiBol1.JH378179               2755068 0 +  10880647 C
e chlSab2.chr8                  53288999 4669 + 139301422 I

a score=34441.000000
s hg38.chr8_KI270814v1_alt         25744 3 +    141812 TTC
s panTro4.chr8                  54966754 3 + 143986469 TTC
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59007962 3 + 153482349 TTC
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48095620 3 + 100215132 TTC
i nomLeu3.chr16                C 0 C 0
s macFas5.chr8                  58366419 3 + 146850525 TCT
i macFas5.chr8                 C 0 C 0
s monDom5.chr8                 174085783 3 + 312544902 TTC
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    318604 3 -   4230514 CTT
i sarHar1.chr5_GL861647_random C 0 C 0
s macEug2.GL108065                 83414 3 -    187545 CTC
i macEug2.GL108065             C 0 C 0
s falChe1.KB398074               4262848 3 -   7151304 tat
i falChe1.KB398074             C 0 I 1
s falPer1.KB391107               2215465 3 -   3101084 tat
i falPer1.KB391107             C 0 I 1
s ficAlb2.chr1A                 24320729 3 +  74947036 ttt
i ficAlb2.chr1A                C 0 I 1
s zonAlb1.KB913045              12581455 3 +  16390125 ttt
i zonAlb1.KB913045             C 0 I 1
s geoFor1.JH739914               5157179 3 -   7168866 ttt
i geoFor1.JH739914             C 0 I 1
s taeGut2.chr1A                 23692114 3 +  73657157 TTT
i taeGut2.chr1A                C 0 I 1
s pseHum1.KB221193               9788834 3 +  32995986 ttt
i pseHum1.KB221193             C 0 I 1
s araMac1.KE026486                  2916 3 -     24340 TAT
i araMac1.KE026486             C 0 I 2
s anaPla1.KB743807                  5448 3 +     81650 tat
i anaPla1.KB743807             C 0 I 1
s anoCar2.chrUn_GL344195           43570 3 +     59083 TTC
i anoCar2.chrUn_GL344195       C 0 I 1
s fr3.chr9                       3741044 3 -  13922460 TTC
i fr3.chr9                     C 0 C 0
s takFla1.KE120500                510786 3 +    663757 TTC
i takFla1.KE120500             C 0 C 0
s neoBri1.JH422276               4184796 3 -  16571924 TTT
i neoBri1.JH422276             N 0 C 0
s hapBur1.JH425411               1656730 3 +   1983257 TTT
i hapBur1.JH425411             N 0 C 0
s mayZeb1.JH720588               2493346 3 +   2778784 ttt
i mayZeb1.JH720588             N 0 C 0
s punNye1.JH419232               4767382 3 +   5065651 ttt
i punNye1.JH419232             N 0 C 0
e astMex1.KB882082               3904406 0 -   8876373 C
e oryLat2.chr15                  8992614 0 +  30000224 C
e amaVit1.KB277496                  6940 0 -     10329 C
e calJac3.chrUn_GL286234           16433 0 +    110629 C
e rheMac3.chr8                  61694530 4033 + 150158102 I
e saiBol1.JH378179               2755068 0 +  10880647 C
e chlSab2.chr8                  53288999 4669 + 139301422 I

a score=-89102.000000
s hg38.chr8_KI270814v1_alt         25747 6 +    141812 TTTCAG-
s panTro4.chr8                  54966757 6 + 143986469 TTTCAG-
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59007965 6 + 153482349 TTTCAG-
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48095623 6 + 100215132 TTTCAG-
i nomLeu3.chr16                C 0 C 0
s macFas5.chr8                  58366422 6 + 146850525 CCTCAA-
i macFas5.chr8                 C 0 C 0
s monDom5.chr8                 174085786 6 + 312544902 CTTCTT-
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    318607 5 -   4230514 TCTCA--
i sarHar1.chr5_GL861647_random C 0 C 0
s macEug2.GL108065                 83417 6 -    187545 TCTCAT-
i macEug2.GL108065             C 0 C 0
s falChe1.KB398074               4262852 5 -   7151304 tttaa--
i falChe1.KB398074             I 1 I 1
s falPer1.KB391107               2215469 5 -   3101084 tttaa--
i falPer1.KB391107             I 1 I 1
s ficAlb2.chr1A                 24320733 5 +  74947036 tttac--
i ficAlb2.chr1A                I 1 I 1
s zonAlb1.KB913045              12581459 5 +  16390125 tttaa--
i zonAlb1.KB913045             I 1 I 1
s geoFor1.JH739914               5157183 5 -   7168866 tttaa--
i geoFor1.JH739914             I 1 I 1
s taeGut2.chr1A                 23692118 5 +  73657157 TTTAA--
i taeGut2.chr1A                I 1 I 1
s pseHum1.KB221193               9788838 5 +  32995986 tttaa--
i pseHum1.KB221193             I 1 I 1
s araMac1.KE026486                  2921 5 -     24340 TTTAA--
i araMac1.KE026486             I 2 I 1
s anaPla1.KB743807                  5452 5 +     81650 tctat--
i anaPla1.KB743807             I 1 I 1
s allMis1.JH737798                 79311 5 +    106177 TTTTA--
i allMis1.JH737798             N 0 I 1
s anoCar2.chrUn_GL344195           43574 3 +     59083 TTT----
i anoCar2.chrUn_GL344195       I 1 C 0
s tetNig2.chr13                  4299617 6 -  13302670 tttca-t
i tetNig2.chr13                N 0 C 0
s fr3.chr9                       3741047 4 -  13922460 --TTA-A
i fr3.chr9                     C 0 C 0
s takFla1.KE120500                510789 4 +    663757 --TTA-A
i takFla1.KE120500             C 0 C 0
s neoBri1.JH422276               4184799 6 -  16571924 TATTA-C
i neoBri1.JH422276             C 0 C 0
s hapBur1.JH425411               1656733 6 +   1983257 TATTA-C
i hapBur1.JH425411             C 0 C 0
s mayZeb1.JH720588               2493349 6 +   2778784 tttta-c
i mayZeb1.JH720588             C 0 C 0
s punNye1.JH419232               4767385 6 +   5065651 tttta-c
i punNye1.JH419232             C 0 C 0
s oryLat2.chr15                  8992614 6 +  30000224 ttttg-t
i oryLat2.chr15                C 0 C 0
s astMex1.KB882082               3904406 4 -   8876373 --TTG-G
i astMex1.KB882082             C 0 C 0
e amaVit1.KB277496                  6940 0 -     10329 C
e calJac3.chrUn_GL286234           16433 0 +    110629 C
e rheMac3.chr8                  61694530 4033 + 150158102 I
e saiBol1.JH378179               2755068 0 +  10880647 C
e chlSab2.chr8                  53288999 4669 + 139301422 I

a score=-110575.000000
s hg38.chr8_KI270814v1_alt         25753 2 +    141812 TC-
s panTro4.chr8                  54966763 2 + 143986469 TC-
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59007971 2 + 153482349 TC-
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48095629 2 + 100215132 TC-
i nomLeu3.chr16                C 0 C 0
s macFas5.chr8                  58366428 2 + 146850525 TT-
i macFas5.chr8                 C 0 C 0
s monDom5.chr8                 174085792 2 + 312544902 CT-
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    318612 2 -   4230514 TT-
i sarHar1.chr5_GL861647_random C 0 C 0
s macEug2.GL108065                 83423 2 -    187545 TT-
i macEug2.GL108065             C 0 C 0
s ornAna1.Ultra479               3870920 2 -   6008416 TT-
i ornAna1.Ultra479             N 0 C 0
s falChe1.KB398074               4262858 1 -   7151304 t--
i falChe1.KB398074             I 1 C 0
s falPer1.KB391107               2215475 1 -   3101084 t--
i falPer1.KB391107             I 1 C 0
s ficAlb2.chr1A                 24320739 1 +  74947036 t--
i ficAlb2.chr1A                I 1 C 0
s zonAlb1.KB913045              12581465 1 +  16390125 t--
i zonAlb1.KB913045             I 1 C 0
s geoFor1.JH739914               5157189 1 -   7168866 t--
i geoFor1.JH739914             I 1 C 0
s taeGut2.chr1A                 23692124 1 +  73657157 T--
i taeGut2.chr1A                I 1 C 0
s pseHum1.KB221193               9788844 1 +  32995986 t--
i pseHum1.KB221193             I 1 C 0
s araMac1.KE026486                  2927 1 -     24340 T--
i araMac1.KE026486             I 1 C 0
s anaPla1.KB743807                  5458 1 +     81650 t--
i anaPla1.KB743807             I 1 I 1
s allMis1.JH737798                 79317 1 +    106177 T--
i allMis1.JH737798             I 1 C 0
s pelSin1.JH208680               8417332 1 -  16024077 T--
i pelSin1.JH208680             N 0 I 1
s tetNig2.chr13                  4299623 2 -  13302670 -tC
i tetNig2.chr13                C 0 C 0
s fr3.chr9                       3741051 2 -  13922460 -TC
i fr3.chr9                     C 0 C 0
s takFla1.KE120500                510793 2 +    663757 -TC
i takFla1.KE120500             C 0 C 0
s neoBri1.JH422276               4184805 2 -  16571924 -TG
i neoBri1.JH422276             C 0 C 0
s hapBur1.JH425411               1656739 2 +   1983257 -TG
i hapBur1.JH425411             C 0 C 0
s mayZeb1.JH720588               2493355 2 +   2778784 -tg
i mayZeb1.JH720588             C 0 C 0
s punNye1.JH419232               4767391 2 +   5065651 -tg
i punNye1.JH419232             C 0 C 0
s oryLat2.chr15                  8992620 2 +  30000224 -tg
i oryLat2.chr15                C 0 C 0
s astMex1.KB882082               3904410 2 -   8876373 -AT
i astMex1.KB882082             C 0 C 0
e anoCar2.chrUn_GL344195           43577 0 +     59083 C
e amaVit1.KB277496                  6940 0 -     10329 C
e calJac3.chrUn_GL286234           16433 0 +    110629 C
e rheMac3.chr8                  61694530 4033 + 150158102 I
e saiBol1.JH378179               2755068 0 +  10880647 C
e chlSab2.chr8                  53288999 4669 + 139301422 I

a score=-70446.000000
s hg38.chr8_KI270814v1_alt         25755 3 +    141812 -TT-G
s panTro4.chr8                  54966765 3 + 143986469 -TT-G
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59007973 3 + 153482349 -TT-G
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48095631 3 + 100215132 -TT-G
i nomLeu3.chr16                C 0 C 0
s macFas5.chr8                  58366430 3 + 146850525 -TC-G
i macFas5.chr8                 C 0 C 0
s monDom5.chr8                 174085794 3 + 312544902 -CC-G
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    318614 3 -   4230514 -CC-A
i sarHar1.chr5_GL861647_random C 0 C 0
s macEug2.GL108065                 83425 3 -    187545 -CC-A
i macEug2.GL108065             C 0 C 0
s ornAna1.Ultra479               3870922 3 -   6008416 -TT-A
i ornAna1.Ultra479             C 0 C 0
s colLiv1.KB375358               1019061 2 +   1462937 -tt--
i colLiv1.KB375358             N 0 C 0
s falChe1.KB398074               4262859 2 -   7151304 -tt--
i falChe1.KB398074             C 0 C 0
s falPer1.KB391107               2215476 2 -   3101084 -tt--
i falPer1.KB391107             C 0 C 0
s ficAlb2.chr1A                 24320740 2 +  74947036 -tt--
i ficAlb2.chr1A                C 0 C 0
s zonAlb1.KB913045              12581466 2 +  16390125 -tt--
i zonAlb1.KB913045             C 0 C 0
s geoFor1.JH739914               5157190 2 -   7168866 -tt--
i geoFor1.JH739914             C 0 C 0
s taeGut2.chr1A                 23692125 2 +  73657157 -TT--
i taeGut2.chr1A                C 0 C 0
s pseHum1.KB221193               9788845 2 +  32995986 -tt--
i pseHum1.KB221193             C 0 C 0
s araMac1.KE026486                  2928 2 -     24340 -TT--
i araMac1.KE026486             C 0 C 0
s anaPla1.KB743807                  5460 2 +     81650 -tt--
i anaPla1.KB743807             I 1 C 0
s galGal4.chr1                  24067092 2 + 195276750 -tt--
i galGal4.chr1                 N 0 C 0
s melGal1.chr1                  24928805 2 + 204065131 -TT--
i melGal1.chr1                 N 0 C 0
s allMis1.JH737798                 79318 3 +    106177 -TTG-
i allMis1.JH737798             C 0 C 0
s cheMyd1.KB478633               2433125 2 +   6037886 -TT--
i cheMyd1.KB478633             N 0 C 0
s chrPic2.chr2                  18523048 2 -  68452538 -TT--
i chrPic2.chr2                 N 0 C 0
s pelSin1.JH208680               8417334 2 -  16024077 -TT--
i pelSin1.JH208680             I 1 C 0
s tetNig2.chr13                  4299625 3 -  13302670 CTA--
i tetNig2.chr13                C 0 C 0
s fr3.chr9                       3741053 3 -  13922460 TTT--
i fr3.chr9                     C 0 C 0
s takFla1.KE120500                510795 3 +    663757 TTT--
i takFla1.KE120500             C 0 C 0
s neoBri1.JH422276               4184807 3 -  16571924 TTG--
i neoBri1.JH422276             C 0 C 0
s hapBur1.JH425411               1656741 3 +   1983257 TTG--
i hapBur1.JH425411             C 0 C 0
s mayZeb1.JH720588               2493357 3 +   2778784 ttg--
i mayZeb1.JH720588             C 0 C 0
s punNye1.JH419232               4767393 3 +   5065651 ttg--
i punNye1.JH419232             C 0 C 0
s oryLat2.chr15                  8992622 3 +  30000224 ttt--
i oryLat2.chr15                C 0 C 0
s astMex1.KB882082               3904412 3 -   8876373 TTG--
i astMex1.KB882082             C 0 C 0
e anoCar2.chrUn_GL344195           43577 0 +     59083 C
e amaVit1.KB277496                  6940 0 -     10329 C
e calJac3.chrUn_GL286234           16433 0 +    110629 C
e rheMac3.chr8                  61694530 4033 + 150158102 I
e saiBol1.JH378179               2755068 0 +  10880647 C
e chlSab2.chr8                  53288999 4669 + 139301422 I

a score=3488157.000000
s hg38.chr8_KI270814v1_alt         25758 125 +    141812 TAGGACTGTTCTACATTTGGCCTGTGCCAATGATGTTCCAGAAGTGGTAACTTTTCTGGCACATAGAAAGTGCCAGCTTAACATCTGTGATAGTGAAAACAGGGCACCTCTGATGAAGGTACATA
s panTro4.chr8                  54966768 125 + 143986469 TAGGACTGTTCTACATTTGGCCTGTGCCAATGATGTTCCAGAAGTGGTAACTTTTCTGGCACATAGAAAGTGCCAGCTTAACATCTGTGATAGTGAAAACAGGGCACCTCTGGTGAAGGTACATA
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59007976 125 + 153482349 TAGGACTGCTCTACATTTGGCCTGTGTCAGTGATGTTCCAGAAGTGGTAACTTTTCTGGCACATAGAAAGTGCCAGTTTAACATCTGTGACAGTGAAAACAGGGCACCTCTGATGAAGGTACCTA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48095634 125 + 100215132 TAGGACTGCTCTACATTTGGCCTGTGCCAGTGATGTTCCAGAAGTGGTAACTTTTCTGGCACATAGAAAGTGCCAGCTTAACATCTGTGACAGTGAAAACAGGGCACCTCTGATAAAGGTACATA
i nomLeu3.chr16                C 0 C 0
s macFas5.chr8                  58366433 125 + 146850525 CAGGATGGCTCTACATTTGGCCTGTGCCAATGACTGTCCAGAAGTGGTAACTTTTCTGGTGCACAGAAAATGCCAGCTTACCATCTGTGACAGTGAAAAGAAGACACTTCTAACGAAGGAATATA
i macFas5.chr8                 C 0 C 0
s monDom5.chr8                 174085797 125 + 312544902 TAGGACTCCTCTGCACCTGGCCTGTGCCAGTGGATATCCAGATGTTGTGTCTGTCCTAGTGGAGAGAAATTGCAACCTAAATGTGTTCGATAGTGACAATCGAACTCCCTTAATTAAGGTTTGTA
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    318617 125 -   4230514 TAGGACTCCTCTCCATCTGGCCTGTGCAAAAGGATATCCAGATGTTGTGTCTCTCTTAGtacaaagaaaatgtaaactaaaCTTGTGTGATAATGACAACCGAACACCTTTAATTAAGGTACTCA
i sarHar1.chr5_GL861647_random C 0 C 0
s macEug2.GL108065                 83428 125 -    187545 TAGGACACCTCTACACCTGGCCTGCGCAAATGGATATCCAGATCTTGTATCTCTCTTAGTAGAGAGAAAATGCAAACTAAACCTGCATGACAATGACTGTCAGACTCCTTTAATTAAGGTATTCA
i macEug2.GL108065             C 0 C 0
s ornAna1.Ultra479               3870925 125 -   6008416 TAGGACACCGTTGCACCTTGCCTGTGCCAAGGGATTTCCAGAAGTTGTGAGTCTCTTAGTTGAAAATAAATGCAAACTGAACCTCTTTGACAGTGATAACCAATCTCCCCTGATGAAGGTAAGTA
i ornAna1.Ultra479             C 0 C 0
s colLiv1.KB375358               1019063 125 +   1462937 taggaCACCTCTGCATCTCGCCTGCGCGAATGGCCACGTGGCTGTTGTTACACATTTGGTAGAAAGCAAGTGTAAGCTAAATCTTCTTGACAGTGATAACAGATCACCCCTGATGAAGGTATGTG
i colLiv1.KB375358             C 0 I 6
s falChe1.KB398074               4262861 125 -   7151304 taggACGCCTCTGCATCTCGCTTCTGCGAATGGCCATGTGAATGTTGTTACATATCTAGTGGAAAACAATTGTAAGTTAAATCTTACTGACGGTGATAACAGATCACCACTGATGAAGGTATGTG
i falChe1.KB398074             C 0 I 6
s falPer1.KB391107               2215478 125 -   3101084 taggACGCCTCTGCATCTCGCTTCTGCGAATGGCCATGTGAATGTTGTTACATATCTAGTGGAAAACAATTGTAAGTTAAATCTTACTGACGGTGATAACAGATCACCACTGATGAAGGTATGTG
i falPer1.KB391107             C 0 I 6
s ficAlb2.chr1A                 24320742 125 +  74947036 taggACAGCTCTGCATCTTGCTTGTGCAAATGGCCACGTGGATATAGTTATGTATCTAGTAGAAAACAAGTGTAAGCTAAATCTTTTTGACAATGATAACAGATCGCCACTGATGAAGGTACGTG
i ficAlb2.chr1A                C 0 I 6
s zonAlb1.KB913045              12581468 125 +  16390125 taggaCGGCTCTGCATCTTGCTTGTGCAAATGGCCACGTGGATGTAGTTACATTTCTAGTAGAAAACAAGTGCAAGCTAAATCTTTTTGACAATGATAACAGATCACCACTGATGAAGGTACGTA
i zonAlb1.KB913045             C 0 I 6
s geoFor1.JH739914               5157192 125 -   7168866 taggaCAGCTCTGCATCTTGCTTGTGCAAATGGCCATGTGGATGTAGTTACATTTCTAGTAGAAAACAAGTGTAAGCTAAATCTTTTTGACAATGATAACAGATCACCACTGATGAAGGTACGTG
i geoFor1.JH739914             C 0 I 6
s taeGut2.chr1A                 23692127 125 +  73657157 TAGGACAGCTTTGCATCTTGCTTGTGCAAATGGCCATGTGGATGTCGTTACGTTTCTAGTAGAAAACAAATGTAAGCTCAATCTCTTTGACAATGATAACAGGTCACCACTGATGAAGGTACGTG
i taeGut2.chr1A                C 0 I 6
s pseHum1.KB221193               9788847 125 +  32995986 taggaCAGCTCTGCATCTTGCTTGTGCAAATGGCCATGTGGATGTAGTTATGTATCTAGTAGAAAACAAGTGTAAGCTAAATCTTTTTGACAATGATAACAGAACGCCACTGATGAAGGTACGTG
i pseHum1.KB221193             C 0 I 6
s melUnd1.JH556589               7667987 125 -   7952740 TAGGACTCCCCTGCATCTCGCTTGTGCGAACGGCCATGTGGATGTCGTCAAATATCTAGTGCAAAAGAACTGCCAGCTGAACCTTGTTGACCGTTTGAAGAGGTCGCCGCTGATGACGGTATGAC
i melUnd1.JH556589             N 0 I 6
s amaVit1.KB277496                  6940 125 -     10329 TAGGACACCTCTGCATCTTGCTTGTGAGAATGGGCATGCAGATGTCGTTCGATTTCTGGCAGAAAATCAGTGCCACCTAGACCCTTGtgacaaagacaagaaaacGCCACTGATGAGGGTACGTG
i amaVit1.KB277496             C 0 I 6
s araMac1.KE026486                  2930 125 -     24340 TAGGACACCTCTGCATCTTGCTTGTGCAAATGGCCATGTGGATGTTGTCACATACCTCATAGAAAACAAGTGTAAGCTAAATCTTTTTGACAATGATAACAGATCGCCACTGATGAAGGTATGTG
i araMac1.KE026486             C 0 I 6
s anaPla1.KB743807                  5462 125 +     81650 taggACACCACTGCATCTTGCTTGCGCAAATGGACATGTGGATGTCGTTACATACCTAGTAGAAAACAAGTGTAAGCTCAATCTTTTTGACAATGATAACAGATCGCCACTGATGAAGGTATGTG
i anaPla1.KB743807             C 0 I 6
s galGal4.chr1                  24067094 125 + 195276750 taggACACCACTGCATCTTGCTTGTGCAAATGGACATGCGGATGTCGTTACGTTTCTAGTAGAAAGCAAGTGTAAGCTAAATCTTTTTGACAATGATAACAGATCACCACTGATGAAGGTAAGTA
i galGal4.chr1                 C 0 I 6
s melGal1.chr1                  24928807 125 + 204065131 TAGGACACCACTGCATCTTGCTTGTGCAAATGGACATGCGGATGTCGTTACGTTTCTAGTAGAAAACAAGTGTAAGCTAAATGTTTTTGACAGTGATAACAGATCACCACTGATGAAGGTAAGTA
i melGal1.chr1                 C 0 I 6
s allMis1.JH737798                 79321 125 +    106177 TAGGACTCCTTTGCATTTGGCATGTGCAAATGGACATCTAGATATTGTTTCCTATTTAATTGAGAACAAGTGCAAGCTAAATCTCTGTGACAACGATAGCAGGTCACCATTAATGAAGGTATGTA
i allMis1.JH737798             C 0 I 8
s cheMyd1.KB478633               2433127 125 +   6037886 TAGGACACCTTTGCATCTTGCCTGTGCTAATGGACATTCAGATGTTGTTACTTATTTAGTGGACAACAAGTGCAAACTAAATCTGTGTGACAATGATAACAGATCCCCGTTGATGAAGGTATGCA
i cheMyd1.KB478633             C 0 I 6
s chrPic2.chr2                  18523050 125 -  68452538 TAGGACACCTTTGCATCTTGCCTGTGCTAATGGGCATTTAGATGTCGTTACTTACTTAGTGGACAACAAGTGCAAACTAAATCTGTGTGACAATGATAACAGATCCCCGTTGATGAAGGTATGCA
i chrPic2.chr2                 C 0 I 6
s pelSin1.JH208680               8417336 125 -  16024077 CAGGACACCTTTGCATCTTGCCTGCGCTAATGGACATTCAGATGTTGTTTCTTACTTAGTGGACAATAAGTGCAAATTGAACCTGTGTGACAATGATAACAGATCTCCATTGATGAAGGTATGCA
i pelSin1.JH208680             C 0 I 1498
s anoCar2.chrUn_GL344195           43577 125 +     59083 CAGAACACCTTTGCATTTTGCCTGCGCCAATGGATGCATAGATGTTGTTACTTTTTTAGTAAGCAACCAATGCCAGCTAGATCTCTACGATAGTGATACAAGAACTCCATTAATGAAGGTATGTA
i anoCar2.chrUn_GL344195       C 0 I 227
s tetNig2.chr13                  4299628 124 -  13302670 CAGAACTGCGCTTCATATTGCCTGTGCCAGTGGACATGTTGAGGTGGTGCATTTTCTTCTTGAGAGAAAAGCCAGGCTTAACCTATGTGATAATCAAAACAGATCCGCTTTAATGAAGGTAATC-
i tetNig2.chr13                C 0 C 0
s fr3.chr9                       3741056 124 -  13922460 CAGAACTGCACTTCATATTGCCTGTGCCAGCGGACACGTTGAGGTGGTGCATTTTCTCCTTGAGAGAAAAGCAAGGCTTAACCTGTGTGACAATCAAAACAGATCCGCTTTAATGAAGGTAATC-
i fr3.chr9                     C 0 C 0
s takFla1.KE120500                510798 124 +    663757 CAGAACTGCACTTCATATTGCCTGTGCCAGCGGACACGTTGAGGTGGTGCATTTTCTCCTTGAGAGAAAAGCAAGGCTTAACCTGTGTGACAATCAAAACAGATCCGCTTTAATGAAGGTAATC-
i takFla1.KE120500             C 0 C 0
s neoBri1.JH422276               4184810 124 -  16571924 CAGAACCGCACTGCATATTGCCTGTGCTAGTGGTCATGTCGAGGTGGTACACTTCCTCGTTGAGAGCAAAGCCAAGCTTAACCTATGTGACAATCAAAATAGATCTGCCTTAATGAAGGTAATC-
i neoBri1.JH422276             C 0 C 0
s hapBur1.JH425411               1656744 124 +   1983257 CAGAACCGCACTGCATATTGCCTGTGCTAGTGGTCATGTCGAGGTGGTACACTTCCTCATTGAGAGCAAAGCCAAGCTTAACCTATGTGACAATCAAAATAGATCTGCCTTAATGAAGGTAATC-
i hapBur1.JH425411             C 0 C 0
s mayZeb1.JH720588               2493360 124 +   2778784 cagAACCGCACTGCATATTGCCTGTGCTAGTGGTCATGTCGAGGTGGTACACTTCCTCGTTGAGAGCAAAGCCAAGCTTAACCTATGTGACAATCAAAATAGATCTGCCTTAATGAAGGTAATC-
i mayZeb1.JH720588             C 0 C 0
s punNye1.JH419232               4767396 124 +   5065651 cagAACCGCACTGCATATTGCCTGTGCTAGTGGTCATGTCGAGGTGGTACACTTCCTCGTTGAGAGCAAAGCCAAGCTTAACCTATGTGACAATCAAAATAGATCTGCCTTAATGAAGGTAATC-
i punNye1.JH419232             C 0 C 0
s oryLat2.chr15                  8992625 124 +  30000224 cagaaCTGCTCTTCATATCGCTTGTGCCTCCGGTCATGTGGAAGTGGTCCAGTTCCTTGTCGAGAATAAAGCCAAGCTTAACCTATGTGACAATCAAAACAGATCCGCCTTAATGAAGGTAATC-
i oryLat2.chr15                C 0 C 0
s astMex1.KB882082               3904415 120 -   8876373 CAGAACTGCTTTACATGTAGCTTGCGTTCATGGACATACAGAGGTGGTTCAGTTTTTGGTGGAAAGTAAAGTCAAGCTCAACTTATGTGACAATCAAAACCGCTCCGCCTTAATGAAGGT-----
i astMex1.KB882082             C 0 C 0
e calJac3.chrUn_GL286234           16433   0 +    110629 C
e rheMac3.chr8                  61694530 4033 + 150158102 I
e saiBol1.JH378179               2755068   0 +  10880647 C
e chlSab2.chr8                  53288999 4669 + 139301422 I

a score=-271657.000000
s hg38.chr8_KI270814v1_alt         25883  4 +    141812 ---GTG--------------------G
s panTro4.chr8                  54966893  4 + 143986469 ---GTG--------------------G
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59008101  4 + 153482349 ---GTG--------------------G
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48095759  4 + 100215132 ---GTG--------------------G
i nomLeu3.chr16                C 0 C 0
s macFas5.chr8                  58366558  4 + 146850525 ---GTA--------------------G
i macFas5.chr8                 C 0 C 0
s monDom5.chr8                 174085922  4 + 312544902 ---CGA--------------------G
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    318742  4 -   4230514 ---TTA--------------------G
i sarHar1.chr5_GL861647_random C 0 C 0
s macEug2.GL108065                 83553  4 -    187545 ---CTA--------------------G
i macEug2.GL108065             C 0 C 0
s ornAna1.Ultra479               3871050 24 -   6008416 ---CCATGAGTCTGTATGAAATGTATA
i ornAna1.Ultra479             C 0 C 0
s colLiv1.KB375358               1019194  2 +   1462937 ---GT----------------------
i colLiv1.KB375358             I 6 C 0
s falChe1.KB398074               4262992  2 -   7151304 ---GT----------------------
i falChe1.KB398074             I 6 C 0
s falPer1.KB391107               2215609  2 -   3101084 ---GT----------------------
i falPer1.KB391107             I 6 C 0
s ficAlb2.chr1A                 24320873  2 +  74947036 ---GG----------------------
i ficAlb2.chr1A                I 6 C 0
s zonAlb1.KB913045              12581599  2 +  16390125 ---GG----------------------
i zonAlb1.KB913045             I 6 C 0
s geoFor1.JH739914               5157323  2 -   7168866 ---GA----------------------
i geoFor1.JH739914             I 6 C 0
s taeGut2.chr1A                 23692258  2 +  73657157 ---AG----------------------
i taeGut2.chr1A                I 6 C 0
s pseHum1.KB221193               9788978  2 +  32995986 ---GG----------------------
i pseHum1.KB221193             I 6 C 0
s melUnd1.JH556589               7668118  2 -   7952740 ---GT----------------------
i melUnd1.JH556589             I 6 C 0
s amaVit1.KB277496                  7071  2 -     10329 ---GT----------------------
i amaVit1.KB277496             I 6 C 0
s araMac1.KE026486                  3061  2 -     24340 ---AT----------------------
i araMac1.KE026486             I 6 C 0
s anaPla1.KB743807                  5593  2 +     81650 ---GT----------------------
i anaPla1.KB743807             I 6 C 0
s galGal4.chr1                  24067225  2 + 195276750 ---GT----------------------
i galGal4.chr1                 I 6 C 0
s melGal1.chr1                  24928938  2 + 204065131 ---GT----------------------
i melGal1.chr1                 I 6 C 0
s allMis1.JH737798                 79454  2 +    106177 ---GT----------------------
i allMis1.JH737798             I 8 C 0
s cheMyd1.KB478633               2433258  2 +   6037886 ---TT----------------------
i cheMyd1.KB478633             I 6 C 0
s chrPic2.chr2                  18523181  2 -  68452538 ---TT----------------------
i chrPic2.chr2                 I 6 C 0
s tetNig2.chr13                  4299752  4 -  13302670 CAAC-----------------------
i tetNig2.chr13                C 0 C 0
s fr3.chr9                       3741180  4 -  13922460 CTAG-----------------------
i fr3.chr9                     C 0 C 0
s takFla1.KE120500                510922  4 +    663757 CTAG-----------------------
i takFla1.KE120500             C 0 C 0
s neoBri1.JH422276               4184934  4 -  16571924 TTGG-----------------------
i neoBri1.JH422276             C 0 C 0
s hapBur1.JH425411               1656868  4 +   1983257 TTGG-----------------------
i hapBur1.JH425411             C 0 C 0
s mayZeb1.JH720588               2493484  4 +   2778784 TTGG-----------------------
i mayZeb1.JH720588             C 0 C 0
s punNye1.JH419232               4767520  4 +   5065651 TTGG-----------------------
i punNye1.JH419232             C 0 C 0
s oryLat2.chr15                  8992749  4 +  30000224 CTGG-----------------------
i oryLat2.chr15                C 0 C 0
e astMex1.KB882082               3904535  0 -   8876373 C
e anoCar2.chrUn_GL344195           43702 227 +     59083 I
e pelSin1.JH208680               8417461 1498 -  16024077 I
e calJac3.chrUn_GL286234           16433  0 +    110629 C
e rheMac3.chr8                  61694530 4033 + 150158102 I
e saiBol1.JH378179               2755068  0 +  10880647 C
e chlSab2.chr8                  53288999 4669 + 139301422 I

a score=-76389.000000
s hg38.chr8_KI270814v1_alt         25887 2 +    141812 -CC
s panTro4.chr8                  54966897 2 + 143986469 -CC
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59008105 2 + 153482349 -CC
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48095763 2 + 100215132 -CC
i nomLeu3.chr16                C 0 C 0
s macFas5.chr8                  58366562 2 + 146850525 -CC
i macFas5.chr8                 C 0 C 0
s monDom5.chr8                 174085926 2 + 312544902 -TT
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    318746 2 -   4230514 -TT
i sarHar1.chr5_GL861647_random C 0 C 0
s macEug2.GL108065                 83557 2 -    187545 -TT
i macEug2.GL108065             C 0 C 0
s ornAna1.Ultra479               3871074 2 -   6008416 -CG
i ornAna1.Ultra479             C 0 C 0
s colLiv1.KB375358               1019196 1 +   1462937 -T-
i colLiv1.KB375358             C 0 I 1
s falChe1.KB398074               4262994 1 -   7151304 -T-
i falChe1.KB398074             C 0 I 1
s falPer1.KB391107               2215611 1 -   3101084 -T-
i falPer1.KB391107             C 0 I 1
s ficAlb2.chr1A                 24320875 1 +  74947036 -T-
i ficAlb2.chr1A                C 0 I 1
s zonAlb1.KB913045              12581601 1 +  16390125 -T-
i zonAlb1.KB913045             C 0 I 1
s geoFor1.JH739914               5157325 1 -   7168866 -T-
i geoFor1.JH739914             C 0 I 1
s taeGut2.chr1A                 23692260 1 +  73657157 -T-
i taeGut2.chr1A                C 0 I 1
s pseHum1.KB221193               9788980 1 +  32995986 -T-
i pseHum1.KB221193             C 0 I 1
s melUnd1.JH556589               7668120 1 -   7952740 -T-
i melUnd1.JH556589             C 0 I 1
s amaVit1.KB277496                  7073 1 -     10329 -T-
i amaVit1.KB277496             C 0 I 1
s araMac1.KE026486                  3063 1 -     24340 -T-
i araMac1.KE026486             C 0 I 1
s anaPla1.KB743807                  5595 1 +     81650 -T-
i anaPla1.KB743807             C 0 I 1
s galGal4.chr1                  24067227 1 + 195276750 -T-
i galGal4.chr1                 C 0 I 1
s melGal1.chr1                  24928940 1 + 204065131 -T-
i melGal1.chr1                 C 0 I 1
s allMis1.JH737798                 79456 1 +    106177 -T-
i allMis1.JH737798             C 0 I 1
s anoCar2.chrUn_GL344195           43929 1 +     59083 -c-
i anoCar2.chrUn_GL344195       I 227 I 1
s tetNig2.chr13                  4299756 2 -  13302670 AT-
i tetNig2.chr13                C 0 C 0
s fr3.chr9                       3741184 2 -  13922460 AT-
i fr3.chr9                     C 0 C 0
s takFla1.KE120500                510926 2 +    663757 AT-
i takFla1.KE120500             C 0 C 0
s neoBri1.JH422276               4184938 2 -  16571924 AT-
i neoBri1.JH422276             C 0 C 0
s hapBur1.JH425411               1656872 2 +   1983257 AT-
i hapBur1.JH425411             C 0 C 0
s mayZeb1.JH720588               2493488 2 +   2778784 AT-
i mayZeb1.JH720588             C 0 C 0
s punNye1.JH419232               4767524 2 +   5065651 AT-
i punNye1.JH419232             C 0 C 0
s oryLat2.chr15                  8992753 2 +  30000224 AA-
i oryLat2.chr15                C 0 C 0
e astMex1.KB882082               3904535 0 -   8876373 C
e cheMyd1.KB478633               2433260 0 +   6037886 C
e chrPic2.chr2                  18523183 0 -  68452538 C
e pelSin1.JH208680               8417461 1498 -  16024077 I
e calJac3.chrUn_GL286234           16433 0 +    110629 C
e rheMac3.chr8                  61694530 4033 + 150158102 I
e saiBol1.JH378179               2755068 0 +  10880647 C
e chlSab2.chr8                  53288999 4669 + 139301422 I

a score=-17076.000000
s hg38.chr8_KI270814v1_alt         25889 8 +    141812 AATTTTTT
s panTro4.chr8                  54966899 8 + 143986469 AATTTTTT
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59008107 8 + 153482349 AATTTTTT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48095765 8 + 100215132 AATTTTTT
i nomLeu3.chr16                C 0 C 0
s macFas5.chr8                  58366564 8 + 146850525 AGTTCTTT
i macFas5.chr8                 C 0 C 0
s monDom5.chr8                 174085928 8 + 312544902 ACCTGTGC
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    318748 8 -   4230514 AACCATGC
i sarHar1.chr5_GL861647_random C 0 C 0
s macEug2.GL108065                 83559 8 -    187545 AACCATGT
i macEug2.GL108065             C 0 C 0
s ornAna1.Ultra479               3871076 8 -   6008416 TATCATTT
i ornAna1.Ultra479             C 0 C 0
s colLiv1.KB375358               1019198 6 +   1462937 --TGTGCT
i colLiv1.KB375358             I 1 I 2
s falChe1.KB398074               4262996 6 -   7151304 --TACTCT
i falChe1.KB398074             I 1 I 2
s falPer1.KB391107               2215613 6 -   3101084 --TACTCT
i falPer1.KB391107             I 1 I 2
s ficAlb2.chr1A                 24320877 6 +  74947036 --TATTCT
i ficAlb2.chr1A                I 1 I 2
s zonAlb1.KB913045              12581603 6 +  16390125 --TGTTCT
i zonAlb1.KB913045             I 1 I 2
s geoFor1.JH739914               5157327 6 -   7168866 --TGTTCT
i geoFor1.JH739914             I 1 I 2
s taeGut2.chr1A                 23692262 6 +  73657157 --TGTTCT
i taeGut2.chr1A                I 1 I 2
s pseHum1.KB221193               9788982 6 +  32995986 --TGTTCT
i pseHum1.KB221193             I 1 I 2
s melUnd1.JH556589               7668122 6 -   7952740 --TGCTCT
i melUnd1.JH556589             I 1 I 2
s amaVit1.KB277496                  7075 6 -     10329 --TGCTGT
i amaVit1.KB277496             I 1 I 2
s araMac1.KE026486                  3065 6 -     24340 --TGTTCT
i araMac1.KE026486             I 1 I 2
s anaPla1.KB743807                  5597 6 +     81650 --TCCTAC
i anaPla1.KB743807             I 1 I 2
s galGal4.chr1                  24067229 6 + 195276750 --TGCTGC
i galGal4.chr1                 I 1 I 2
s melGal1.chr1                  24928942 6 + 204065131 --TGCCGC
i melGal1.chr1                 I 1 I 2
s allMis1.JH737798                 79458 6 +    106177 --TGATTG
i allMis1.JH737798             I 1 I 2
s cheMyd1.KB478633               2433260 8 +   6037886 AATGCAGT
i cheMyd1.KB478633             C 0 C 0
s chrPic2.chr2                  18523183 8 -  68452538 AATGCAGT
i chrPic2.chr2                 C 0 C 0
s pelSin1.JH208680               8418959 8 -  16024077 aATCTGAG
i pelSin1.JH208680             I 1498 C 0
s anoCar2.chrUn_GL344195           43931 8 +     59083 aattttgt
i anoCar2.chrUn_GL344195       I 1 C 0
s tetNig2.chr13                  4299758 7 -  13302670 -ATGCTGT
i tetNig2.chr13                C 0 C 0
s fr3.chr9                       3741186 7 -  13922460 -ATACTGT
i fr3.chr9                     C 0 C 0
s takFla1.KE120500                510928 7 +    663757 -ATACTGT
i takFla1.KE120500             C 0 C 0
s neoBri1.JH422276               4184940 8 -  16571924 GATGGCGC
i neoBri1.JH422276             C 0 C 0
s hapBur1.JH425411               1656874 8 +   1983257 GATGGCGC
i hapBur1.JH425411             C 0 C 0
s mayZeb1.JH720588               2493490 8 +   2778784 GATGCCGC
i mayZeb1.JH720588             C 0 C 0
s punNye1.JH419232               4767526 8 +   5065651 GATGCCGC
i punNye1.JH419232             C 0 C 0
s oryLat2.chr15                  8992755 8 +  30000224 GATGGAAC
i oryLat2.chr15                C 0 C 0
s astMex1.KB882082               3904535 7 -   8876373 -ATGGCTC
i astMex1.KB882082             C 0 C 0
e calJac3.chrUn_GL286234           16433 0 +    110629 C
e rheMac3.chr8                  61694530 4033 + 150158102 I
e saiBol1.JH378179               2755068 0 +  10880647 C
e chlSab2.chr8                  53288999 4669 + 139301422 I

a score=-813669.000000
s hg38.chr8_KI270814v1_alt         25897 30 +    141812 CAG--C----ATGAGATGA------------------------------ATT-------TG-----GCT------GAAATACAC
s panTro4.chr8                  54966907 30 + 143986469 CAG--C----ATGAGATGA------------------------------ATT-------TG-----GCT------GAAATACAC
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59008115 30 + 153482349 CAG--C----ATGAGATGA------------------------------ATT-------TG-----GCT------GAAATGCAC
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48095773 30 + 100215132 CAG--C----GTGAGATGA------------------------------ATT-------TG-----GCT------GAAATACAC
i nomLeu3.chr16                C 0 C 0
s macFas5.chr8                  58366572 30 + 146850525 CAG--C----ATGAGATGG------------------------------ATT-------TG-----GCT------TAAATACAT
i macFas5.chr8                 C 0 C 0
s monDom5.chr8                 174085936 32 + 312544902 TGC--TC--AGGGCAATGC------------------------------ATT-------TT-----GAT------CTCTCCCTT
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    318756 32 -   4230514 TGG--TC--Aatgaaatgc------------------------------ttt-------tt-----gat------ttctCTCCT
i sarHar1.chr5_GL861647_random C 0 C 0
s macEug2.GL108065                 83567 32 -    187545 TGG--TC--TACATAATGC------------------------------ATT-------TT-----GAT------TTCTCTCTT
i macEug2.GL108065             C 0 C 0
s ornAna1.Ultra479               3871084 30 -   6008416 TAG--T----AGAAGATGC------------------------------CTT-------TT-----GCT------GTCCTTCAC
i ornAna1.Ultra479             C 0 I 424
s colLiv1.KB375358               1019206 25 +   1462937 -----T----AAGTGGGGC------------------------------TTA-------TT-----GAT------TATGCAC--
i colLiv1.KB375358             I 2 C 0
s falChe1.KB398074               4263004 25 -   7151304 -----T----AAGTGGGAC------------------------------TTG-------TC-----AAC------TGTGCAT--
i falChe1.KB398074             I 2 C 0
s falPer1.KB391107               2215621 25 -   3101084 -----T----AAGTGGGAC------------------------------TTG-------TC-----AAC------TGTGCAT--
i falPer1.KB391107             I 2 C 0
s ficAlb2.chr1A                 24320885 25 +  74947036 -----C----AAGTGAGAC------------------------------TTA-------CT-----GAT------TTGGAAC--
i ficAlb2.chr1A                I 2 C 0
s zonAlb1.KB913045              12581611 25 +  16390125 -----C----AAGTGAGAC------------------------------TTA-------CT-----GAT------TTTGAAC--
i zonAlb1.KB913045             I 2 C 0
s geoFor1.JH739914               5157335 25 -   7168866 -----C----AAGTGAGAC------------------------------TTA-------CT-----GAC------TTTGAAC--
i geoFor1.JH739914             I 2 C 0
s taeGut2.chr1A                 23692270 25 +  73657157 -----C----AAGCGAGAC------------------------------GTA-------CT-----GCT------TTTGAAC--
i taeGut2.chr1A                I 2 C 0
s pseHum1.KB221193               9788990 25 +  32995986 -----C----AAGTGAGGT------------------------------TTA-------CT-----TAT------TATGAac--
i pseHum1.KB221193             I 2 C 0
s melUnd1.JH556589               7668130 25 -   7952740 -----T----AAGCTGGGT------------------------------TTA-------TT-----GAT------GGTGCAT--
i melUnd1.JH556589             I 2 C 0
s amaVit1.KB277496                  7083 25 -     10329 -----T----ATGTTGGGC------------------------------TAT-------TC-----GCT------TACGCAC--
i amaVit1.KB277496             I 2 C 0
s araMac1.KE026486                  3073 25 -     24340 -----T----AAGTAGAGC------------------------------TTA-------TC-----GAT------TAGGCAG--
i araMac1.KE026486             I 2 C 0
s anaPla1.KB743807                  5605 25 +     81650 -----A----AAGTGGGGC------------------------------TTA-------TT-----GAT------TACATGT--
i anaPla1.KB743807             I 2 C 0
s galGal4.chr1                  24067237 25 + 195276750 -----C----AACTAGGAA------------------------------TTA-------TT-----TCT------TATGTAT--
i galGal4.chr1                 I 2 C 0
s melGal1.chr1                  24928950 25 + 204065131 -----C----AAGTAGGAA------------------------------TTA-------TT-----GAT------TATGTAC--
i melGal1.chr1                 I 2 C 0
s allMis1.JH737798                 79466 45 +    106177 -----C----CAGATGTAT-----CAGTATTAATTTCCAGTTAG-----TTA-------CA-----AGA------TATATAT--
i allMis1.JH737798             I 2 C 0
s cheMyd1.KB478633               2433268 31 +   6037886 -----T----ATGTAAGAT------------------------------GTA-------CT-----AATATTATTTTTCCAC--
i cheMyd1.KB478633             C 0 C 0
s chrPic2.chr2                  18523191 31 -  68452538 -----T----ATGTAAGAT------------------------------GTA-------CT-----GATATTACTTTTCCAC--
i chrPic2.chr2                 C 0 C 0
s pelSin1.JH208680               8418967 36 -  16024077 CAACAT----TGGAAAAAT------------------------------CTT-------CT-----AGTATACTATATCAAC--
i pelSin1.JH208680             C 0 C 0
s apaSpi1.KB929668               5961177 36 -  12308914 CAACAT----TGGAAAAAT------------------------------CTT-------CT-----AGTATACTACATCAAC--
i apaSpi1.KB929668             N 0 C 0
s anoCar2.chrUn_GL344195           43939 25 +     59083 -----c----aagaaaatc------------------------------ttg-------tg-----ata------gggTTGC--
i anoCar2.chrUn_GL344195       C 0 C 0
s tetNig2.chr13                  4299765 31 -  13302670 ------AGGAAGGGGCGGA------------------------------ATC-------TTTCACAGAA------TTTTT----
i tetNig2.chr13                C 0 C 0
s fr3.chr9                       3741193 31 -  13922460 ------AGGGATGGAGTCA------------------------------GTC-------TATTACAGAA------TAATT----
i fr3.chr9                     C 0 C 0
s takFla1.KE120500                510935 31 +    663757 ------AGGGATGGAGTCA------------------------------GTC-------TATTACAGAA------TAATT----
i takFla1.KE120500             C 0 C 0
s neoBri1.JH422276               4184948 26 -  16571924 ------TTCAAGTTGGTGA------------------------------CTC-------tt-----aat------aaatt----
i neoBri1.JH422276             C 0 C 0
s hapBur1.JH425411               1656882 26 +   1983257 ------TTCAAGTTGGTGA------------------------------CTC-------tt-----aat------aaatt----
i hapBur1.JH425411             C 0 C 0
s mayZeb1.JH720588               2493498 26 +   2778784 ------TTCAAGTTGGTGA------------------------------CTC-------tt-----aat------aaatt----
i mayZeb1.JH720588             C 0 C 0
s punNye1.JH419232               4767534 26 +   5065651 ------TTCAAGTTGGTGA------------------------------CTC-------tt-----aat------aaact----
i punNye1.JH419232             C 0 C 0
s oryLat2.chr15                  8992763 56 +  30000224 ------CCTGCGATGCAGAGGAATCGGAACTGGAACCCACCGTCCCCGCCTC-------tt-----gat------ttttt----
i oryLat2.chr15                C 0 C 0
s astMex1.KB882082               3904542 33 -   8876373 ------TGTGTATTTAAga------------------------------atcagtatattt-----aat------tatta----
i astMex1.KB882082             C 0 C 0
e calJac3.chrUn_GL286234           16433  0 +    110629 C
e rheMac3.chr8                  61694530 4033 + 150158102 I
e saiBol1.JH378179               2755068  0 +  10880647 C
e chlSab2.chr8                  53288999 4669 + 139301422 I

a score=-516.000000
s hg38.chr8_KI270814v1_alt         25927 1 +    141812 A
s panTro4.chr8                  54966937 1 + 143986469 A
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59008145 1 + 153482349 A
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48095803 1 + 100215132 A
i nomLeu3.chr16                C 0 C 0
s macFas5.chr8                  58366602 1 + 146850525 A
i macFas5.chr8                 C 0 C 0
s monDom5.chr8                 174085968 1 + 312544902 G
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    318788 1 -   4230514 T
i sarHar1.chr5_GL861647_random C 0 C 0
s macEug2.GL108065                 83599 1 -    187545 T
i macEug2.GL108065             C 0 C 0
s colLiv1.KB375358               1019231 1 +   1462937 T
i colLiv1.KB375358             C 0 I 42
s falChe1.KB398074               4263029 1 -   7151304 T
i falChe1.KB398074             C 0 I 44
s falPer1.KB391107               2215646 1 -   3101084 T
i falPer1.KB391107             C 0 I 44
s ficAlb2.chr1A                 24320910 1 +  74947036 T
i ficAlb2.chr1A                C 0 I 1
s zonAlb1.KB913045              12581636 1 +  16390125 T
i zonAlb1.KB913045             C 0 I 42
s geoFor1.JH739914               5157360 1 -   7168866 T
i geoFor1.JH739914             C 0 I 1
s taeGut2.chr1A                 23692295 1 +  73657157 T
i taeGut2.chr1A                C 0 I 1
s pseHum1.KB221193               9789015 1 +  32995986 t
i pseHum1.KB221193             C 0 I 1
s melUnd1.JH556589               7668155 1 -   7952740 T
i melUnd1.JH556589             C 0 I 44
s amaVit1.KB277496                  7108 1 -     10329 T
i amaVit1.KB277496             C 0 I 44
s araMac1.KE026486                  3098 1 -     24340 T
i araMac1.KE026486             C 0 I 42
s anaPla1.KB743807                  5630 1 +     81650 T
i anaPla1.KB743807             C 0 I 49
s galGal4.chr1                  24067262 1 + 195276750 T
i galGal4.chr1                 C 0 I 65
s melGal1.chr1                  24928975 1 + 204065131 T
i melGal1.chr1                 C 0 I 69
s allMis1.JH737798                 79511 1 +    106177 T
i allMis1.JH737798             C 0 I 40
s cheMyd1.KB478633               2433299 1 +   6037886 T
i cheMyd1.KB478633             C 0 I 32
s chrPic2.chr2                  18523222 1 -  68452538 T
i chrPic2.chr2                 C 0 I 8
s pelSin1.JH208680               8419003 1 -  16024077 A
i pelSin1.JH208680             C 0 I 8
s apaSpi1.KB929668               5961213 1 -  12308914 A
i apaSpi1.KB929668             C 0 I 8
s anoCar2.chrUn_GL344195           43964 1 +     59083 T
i anoCar2.chrUn_GL344195       C 0 I 3
e ornAna1.Ultra479               3871114 424 -   6008416 I
e tetNig2.chr13                  4299796 0 -  13302670 C
e punNye1.JH419232               4767560 0 +   5065651 C
e mayZeb1.JH720588               2493524 0 +   2778784 C
e hapBur1.JH425411               1656908 0 +   1983257 C
e neoBri1.JH422276               4184974 0 -  16571924 C
e astMex1.KB882082               3904575 0 -   8876373 C
e oryLat2.chr15                  8992819 0 +  30000224 C
e takFla1.KE120500                510966 0 +    663757 C
e fr3.chr9                       3741224 0 -  13922460 C
e calJac3.chrUn_GL286234           16433 0 +    110629 C
e rheMac3.chr8                  61694530 4033 + 150158102 I
e saiBol1.JH378179               2755068 0 +  10880647 C
e chlSab2.chr8                  53288999 4669 + 139301422 I

a score=-2313933.000000
s hg38.chr8_KI270814v1_alt         25928 156 +    141812 GAATAAA-AATG------------------AA-TTTATCTCACCGAA--------------------------AT-----A--TCCA---------CA----G------------------------------------TTTGTGAA-----------------AC----------------------------------------------------------------------GTGGAA--TGTG-TA-TA------------------------------------------------TTG-A------------TTGTTTAGAA-----C--------------------------------------------TTAAA----ATT-----TC-------TT----GGACTAA-TACTGATAGGTTATTCAATGCCAATAAGATGTTTTTGCAACTATTCTGCTCGACTTTGGTG
s panTro4.chr8                  54966938 156 + 143986469 GAATAAA-AATG------------------AA-TTTATCTCACCGAA--------------------------AT-----A--TCCA---------CA----G------------------------------------TTTATGAA-----------------AC----------------------------------------------------------------------GTGGAA--TGTG-TA-TA------------------------------------------------TTG-A------------TTTTTTAGAA-----C--------------------------------------------TTAAA----ATT-----TC-------TT----GGACTAA-TACTGATAGGTTATTCAATGCCAATAAGATGTTTTTGCAACTATTCTGCTCGACTTTGGTG
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59008146 158 + 153482349 GAATAAA-AATG------------------AA-TTTATCTCACTGAA--------------------------AT-----A--TCCA---------CA----G------------------------------------TTTGTGAA-----------------AC--------------------------------------------------------------------ATGTGGAA--TGTG-TA-TT------------------------------------------------TTG-A------------TTTTTTAGAA-----C--------------------------------------------TTACA----ATT-----TC-------TT----GGACTAA-TACTGATAGGTTATTCAATGCCAATAAGATGTTTTTGCAACTATTCTGCTCGACTTTGGTG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48095804 158 + 100215132 GAATAAA-AATG------------------AA-TTTATCTCACTGAA--------------------------AT-----A--TAAC---------TA----G------------------------------------TTTGTGAA-----------------AC--------------------------------------------------------------------CTGTGGAA--TGTG-TA-TT------------------------------------------------TTG-A------------TTTTTTAGAA-----C--------------------------------------------TTAAA----ATT-----TC-------TT----GGACTAA-TACTGATAGGTTATTCAATGCCAATAAGATGTTTTTGCAACTATTCTTCTCGACTTTGGTG
i nomLeu3.chr16                C 0 I 305
s macFas5.chr8                  58366603 158 + 146850525 GAATAAA-AATG------------------AA-TTTGTCTCATTGAA--------------------------AT-----A--TAAC---------TA----G------------------------------------TTTGTGAA-----------------AC--------------------------------------------------------------------CTGTGGAA--TATT-TA-TT------------------------------------------------TTG-A------------TTTCCTACAA-----T--------------------------------------------TTACGATTTATT-----TC-------TT----GTTCTAA-TACTGATAGGTTGTAACATGCCAAGAAGATG----TGAAACTATTCTGCTAGACTTTGATG
i macFas5.chr8                 C 0 C 0
s monDom5.chr8                 174085969 157 + 312544902 GATGAAG-AA--------------------AG-TATGCTTTACTAAT--------------------------AT-----A---TTA---------AATACCA------------------------------------GCAGTGAT-----------------G----------------------------------------------------------------------TTTAGTA--TCCT-CA-AT------------------------------------------------TTG-A------------TGTGACTTTA-----T--------------------------------------------TTCTT----ATG-----TC-------TC----TGTCTTC-TACTGGCAGGCTGTACAGTGTCAGAGGGAGGAGTGTGTAGGTATCCTGCTCAGCCATGGTG
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    318789 160 -   4230514 GACTAAG-AA--------------------AA-TATGCTTTACTAAC--------------------------AT-----T--TTTA---------TATGCCA------------------------------------CTAATGAT-----------------AC---------------------------------------------------------------------TTTAATA--tact-aa-at------------------------------------------------tttat------------atttagagta-----t--------------------------------------------ttatt----atc-----tc-------tt----tgtatTA-TACTGACAGGCAGTACAGTGTCAGCAGGAGGAGTGTGCAACAATCCTGCTGGAACATGGTG
i sarHar1.chr5_GL861647_random C 0 C 0
s macEug2.GL108065                 83600 163 -    187545 GATTAAG-AA--------------------AA-TATTCTTTACTAAC--------------------------TT-----A--TTTA---------AATATCA------------------------------------CTAATGAT-----------------GT---------------------------------------------------------------------TTTAGTA--TACT-AA-AT------------------------------------------------TTT-T------------TCTTCGAGTA-----T--------------------------------------------TTATT----GTC-----TC-------TTTCTCTATATTC-CATTGACAGGCAGTACAGTGTCAGCAAGAAGAGTGTGCAACTATCCTGCTTGAACATGGTG
i macEug2.GL108065             C 0 C 0
s ornAna1.Ultra479               3871538 147 -   6008416 GACTAGA-AATATC-----TATATTT----GA-TCTCTCTTACTG---------------------------------------------------------T------------------------------------CTTTTGAA-----------------CT--------------------------------------------------------------------------AG--TCTG-GG-CT------------------------------------------------TAC-T------------TAATGTAGAA-----T--------------------------------------------CTA------ATT-----CC-------GT----TGGTTTG--ATTCGTAGGCAATAGAATGCCAGAAGGAACAGTGTGCAATTATCCTGCTGGATCACGATG
i ornAna1.Ultra479             I 424 C 0
s colLiv1.KB375358               1019274 226 +   1462937 AAACATG-CATATT----------ATGGTGGA-TTGGCATGGAATAG--------------------------GC-----A--TATG---------TT----ACtgttagggaatagactgcATGAGCTAATC------TTAGAAGGTGCTCTTGTTTTCCAGCAT-------------------------------------------------------------TGGGAAGCTGGGGGA--ATGG-TA-ACAGAGTGAAA---------------------------------------TGT-A------------AACGCTGGAA-----G--------------------------------------------TT-------TTC-----CC-------TT----TGTGTGT-TGTTCCCAGGCAGTACAGtgccagcaagaaaaatgtgtggCTATTCTACTAGAACATGGTG
i colLiv1.KB375358             I 42 C 0
s falChe1.KB398074               4263074 187 -   7151304 AAGCATG-CATGTT----------GT----CA-TCCACATGGAATAG--------------------------GC-----A--TATG---------TT----A-----------------------GCTAAGC------TTTGAAGGTGCTCTTATTTTCCAGCAT-------------------------------------------------------------TGGGAAGCTGGGGTA--GTTG-CA-ACA---------------------------------------------------G------------ACTGCTGGAA-----G--------------------------------------------TT-------CTT-----CC-------T-----TTTGTGC-TCTTCCCAGGCAGTACAGTGCCATCAAGAAGAATGTGTAGCTATTCTGCTAGAGCACGGTG
i falChe1.KB398074             I 44 C 0
s falPer1.KB391107               2215691 187 -   3101084 AAGCATG-CATGTT----------GT----CA-TCCACATGGAATAG--------------------------GC-----A--TATG---------TT----A-----------------------GCTAAGC------TTTGAAGGTGCTCTTATTTTCCAGCAT-------------------------------------------------------------TGGGAAGCTGGGGTA--ATTG-CA-ACA---------------------------------------------------G------------ACTGCTGGAA-----G--------------------------------------------TT-------CTT-----CC-------T-----TTTGTGC-TCTTCCCAGGCAGTACAGTGCCATCAAGAAGAATGTGTAGCTATTCTGCTAGAGCACGGTG
i falPer1.KB391107             I 44 C 0
s ficAlb2.chr1A                 24320912 259 +  74947036 AAAGGTG-TATTTG----------TC----AG-TATTCTTTATGTAG--------------------------AC-----C--TTTG---------TA----A--------------------------AATCATGCATATTGTGATTGGTGTGGAATGGGCATATGTTAGCTAATCTAACATATTCTAATATAATCTAATTATGAGGTGCTCGTAATTCCC----------------AGTA--TTAG-GA-AGATGGGGAAATTGCAACAAAGT-----------------------GAAATGT-A------------AATGATGgaa-----g--------------------------------------------tt-------ttt--------------------tgtcttt-tgtttccaGGCAGTACAGTGCCAGCAAGAAAAATGTGTGGCTATTCTGCTAGAACATGGTG
i ficAlb2.chr1A                I 1 C 0
s zonAlb1.KB913045              12581679 195 +  16390125 AATCACG-CATATT----------GT----GA-TTGTTGTGGAATGG--------------------------GC-----A--TATA---------TT----A-----------------------GC-AATC------TTTGAAGGTGCTCTTAATTCCCTGTAT-------------------------------------------------------------TGGGAAGATGGAGGA--ATTG-CT-GCAAAGTGAAAC--------------------------------------TGT-A------------AATGCTGgaa-----g--------------------------------------------tt-------ttt--------------------tgtgttt-tgtttccagGCAGTACAATGCCAGCAAGAAAAATGTGTGGCTATTCTGCTAGAACATGGTG
i zonAlb1.KB913045             I 42 C 0
s geoFor1.JH739914               5157362 236 -   7168866 AATgatg-tatttt----------tc----ag-tattcTTTATGTGG--------------------------AC-----C--TTTG---------TA----A--------------------------AATCACGCATATTGTGATTGTTGTGGAATGGGCATATGTTAGCT-ATC-----------------------TTTGAAGGTGCTCTTAATTCCCAGTACCGGGAAGAGGGAGGA--ATTG-CT-ACAAAGTGAAAC--------------------------------------TGT-A------------AATGCTCaaa-----g--------------------------------------------tt-------ttt--------------------tgtgttt-tgtttccagGCAGTACAGTGCCAGCAAGAAAAATGTGTGGCTATTCTGCTAGAACATGGTG
i geoFor1.JH739914             I 1 C 0
s taeGut2.chr1A                 23692297 228 +  73657157 AATTATG-TATTTT----------TC----AA-TGTTCTTTATGTAG--------------------------AC-----C--TTTG---------TA----A--------------------------AATCATGCATATTGTGATTGTTGTGGAATGGGCATATGTTAGCCAATC-----------------------TTTGAAGGTGCTCTTCAA---------AGGGAAGATGGAGGA--ATTG-CA-GCAAAGTGAAAC--------------------------------------TGT-A------------AAGGCTGGAA-----G--------------------------------------------TT-------TGT--------------------TGTGTTT-TGTTTCCAGGCAGTACAGTGCCAGCAAGAAAAATGTGTGGCTATTCTGCTAGAACATGGTG
i taeGut2.chr1A                I 1 C 0
s pseHum1.KB221193               9789017 236 +  32995986 aattatg-tatttt----------tt----gg-TATTCTTTATGGAG--------------------------AC-----C--TTTG---------TA----A--------------------------AATCACACAAATTGTGATTGGTGGGGAATGGGCATATGCTAGCTAATC-----------------------TTTGAAGGTGCTCTTAATTCCC----------------AGTA--TTGG-GA------------------------AGATAGAGGAATTGCAACAAAGTGAAATGT-A------------AATGCTGgaa-----g--------------------------------------------tt-------ttt--------------------tgtgttt-tgtttccagGCAGTACAGTGCCAGCAAGAAAAATGTGTGGCTATTCTGCTAGAACGTGGTG
i pseHum1.KB221193             I 1 C 0
s melUnd1.JH556589               7668200 197 -   7952740 AAACATG-CATGTC----------GT----AC-TCAGCATGGAAGAG--------------------------GC-----A--TGCG---------TT----A-----------------------GCTAATC------TTTGAAGATGTCCTCCTTGCCCAGAGT-------------------------------------------------------------TTGGAAGCTGGGCAA--GTTG-T---GACGGTGGCA---------------------------------------CAT-A------------AATACTGAAA-----G--------------------------------------------TC-------TTT-----CC-------CA----TATGTGT-TGATCCTAGGCAGTAGAGTGCCGGCAAGAGAAATGTGTGGCTATACTGCTGGAGCATGGTG
i melUnd1.JH556589             I 44 C 0
s amaVit1.KB277496                  7153 201 -     10329 AA-CAGG-TATGTT-----------------------------GTAG--------------------------TC-----A-----------------------------------------------------------------------------------GC-------------------------------------------------------------AGGGAAGAGGCATAT--GTTG-CC-TGATCTTTGAA---------------------------------------GGT-GCTTCTACTTTCCAGTGTTGGGA-----AGGTGCCAGAGTTCTGACAGAGAAAAACGTCTCTGTTGGTAGTCATT-------CCT-----CC-------TT----TCTGTCT-TGTTTCCAGGCAGTAGAGTCCAGGCACGAAGACTGTGTAGCTACTCTGCTGGAGCTCGGTG
i amaVit1.KB277496             I 44 C 0
s araMac1.KE026486                  3141 201 -     24340 AACCATG-TATGTT----------GT----AA-TTGCTGTGGAATAG--------------------------GC-----A--TATA---------TT----A-----------------------GGTAATC------TTCAAGGATGCTCTGTTGTTCCACTGT-------------------------------------------------------------AGGGAAGCTGGGGGA--ATTG-TA-ACAAAGTGGAA---------------------------------------TGT-A------------AATGTTGGaa-----at-------------------------------------------tt-------ttc-----cc-------tt----cttgtgtATGTTCCCAGGCGGTACAGTGCCAGCAAGAAAAGTGTGTGGCTGTTCTGCTAGAGCATGGTG
i araMac1.KE026486             I 42 C 0
s anaPla1.KB743807                  5680 163 +     81650 -----GG-TGTATT----------AT----AGCTAGTCTTGGAAGAG--------------------------GC-----T---------------TC----C--------------------------CAGC------ATTGGGAA-----------------TT---------------------------------------------------------------------TGCGGTA--TTCATTG-GTAGAGTGAAA---------------------------------------CGT-G------------Actgttgca------a--------------------------------------------tt-------ttt-----tt-------tc----cttgtat-tgtTTCCAGGCAGTACaatgccagaaagaaaaatgtgtggCTATCTTGCTGGAGCACGGTG
i anaPla1.KB743807             I 49 C 0
s galGal4.chr1                  24067328 179 + 195276750 TGCTAGG-TGTGTG----------CT----AGCTCATCTTAGAAGAT--------------------------GC-----TTTTATA---------TT----C--------------------------CAGG------AGTGGGAA-----------------GT---------------------------------------------------------------------TGTAGTA--CTTG-TG-ACACAATGAAA---------------------------------------TAT-G------------ACTGCTGGAAGTTTta--------------------------------------------cc-------ttt-----tt-------tg----tgtgtgt-tgtttcCAGGCAGTACAATGCCAGCAAGAAAAATGTGTGGCAATCCTGCTGGAGCACGGTG
i galGal4.chr1                 I 65 C 0
s melGal1.chr1                  24929045 179 + 204065131 GGCTGGG-TGTATG----------CT----AGCTCATCTCAGAAGAT--------------------------GC-----TTTTATA---------TT----C--------------------------CAGG------AGTGGGAA-----------------GT---------------------------------------------------------------------TGTAGTA--GTTG-TG-ACACAATGAAA---------------------------------------TAT-G------------ACTGCTGGAAATTTTA--------------------------------------------CT-------TTT-----TT-------TG----TGTGCGT-TGTTTTCAGGCAGTACAATGCCAGCAAGAAAAATGTGTGGTAATCCTGCTAGAGCACGGTG
i melGal1.chr1                 I 69 C 0
s allMis1.JH737798                 79552 180 +    106177 AAATATG--ATACT-----------T----AA-TATGTTTAAAATCA--------------------------TC-----T--TCCT---------TA----T------------------------------------TTTCAGATT----------------TT-------------------------------------------------------------ATGTTACTTGTAGTA--ATTC-TATTTAAGGTAAAA---------------------------------------TTT-A------------ACTTCTAGAA-----T--------------------------------------------TT-------ATTACCTCTT-------TT----TGTGTTA-TACTTCCAGGCAGTACAATGCCAACAAGAAAAATGTGCAACTCTGCTGCTAGAACGTGGCG
i allMis1.JH737798             I 40 C 0
s cheMyd1.KB478633               2433332 204 +   6037886 AGTTACGTTACTGTCAGTGGGTATGT----AA-TATAGTATATAAAC-------AAAATGTTAATgcagtttttt-----a--ttta---------tt----a--------------at-----------ttc------attaagtTG-----------------------------------------------------------------------------------------TGGCA--ATTC-TA-ATAAGATGGAA---------------------------------------TTT-A------------ACTTTCAGAa-----t--------------------------------------------tt-------att-----ct--ctctttt----tctgtta-TATTCACAGGCAGTACAATGCCAGCAGGAAAAATGTGCAACTATGCTGCTAGAACATGGTG
i cheMyd1.KB478633             I 32 C 0
s chrPic2.chr2                  18523231 234 -  68452538 AACTCTG-TATTAT-----GGAATGT----AA-AAAGTTACATTACTGTCAGTGGGTATGTGTATGTAATATAGT-----A--TATAAACAAAATGTT----A--------------ATgcagttttttattt------attaatttc----------------at----------------------------------------------------------------taagtTGTGGCA--ATTC-TA-ATAAGATGGAG---------------------------------------TTT-A------------ACTTACGGAA-----T--------------------------------------------TT-------ATT-----CT--CTCTTTT----TCTGTTA-TATTCACAGGCAGTACAATGCCAGCAGGAAAAATGTGCAACTATGCTGCTAGAACATGGTG
i chrPic2.chr2                 I 8 C 0
s pelSin1.JH208680               8419012 154 -  16024077 ATGCATT-TTTTAC-----------T----AA-TTGATTTCATTAAG-------------------------------------------------TT----A--------------------------------------------------------------------------------------------------------------------------------------TGGGC--AGTT-TA-ATAAGATGGAA---------------------------------------TTT-A------------GTTTGCCAGA-----T--------------------------------------------TT-------ATT-----CTCACTCTTTT----TCTATTA-CATTTACAGGCAGTACAGTGCCAGCAGGAAAAATGTGTAACCTTACTGCTAGAACATGGTG
i pelSin1.JH208680             I 8 C 0
s apaSpi1.KB929668               5961222 154 -  12308914 ATGCATT-Ttttac-----------t----ca-ttaatttcattaag-------------------------------------------------TT----A--------------------------------------------------------------------------------------------------------------------------------------TGGCC--AGTT-TA-ATAAGATGGAA---------------------------------------TTT-A------------GTTTGTCAGA-----T--------------------------------------------TT-------ATT-----CTCACTCTTTT----TCTATTA-CATTTACAGGCAGTACAGTGCCAGCAGGAAAAATGTGTAACTTTGCTGCTAGAACATGGCG
i apaSpi1.KB929668             I 8 C 0
s anoCar2.chrUn_GL344195           43968 162 +     59083 aactgga-aatgac----------tt----ga-------------ag--------------------------ac-----a---------------ca----a--------------------------ag--------tTTTAGCACACTATGCTGTGGCAGCAT-----------------------------------------------------------------------GAATT--ATTT-GG-ACGAATTGACA---------------------------------------TGT-G------------G--GGCTAAC-----T--------------------------------------------TC-------CTC-----TT-------CT----TAAATGT-TAT----AGGCTGTGCAGTGCCAGCAAGATTTATGTGCAATTTACCTGCTTGAGCAAGGAG
i anoCar2.chrUn_GL344195       I 3 C 0
s tetNig2.chr13                  4299796 124 -  13302670 ---------------------------------------CTGATCAC--------------------------TC-----A--TTTG---------TT----T--------------------------AAAC------GTCCTAC-------------CAGTTGT---------------------------------------------------------------------TGCAGCTT-CGTT-TG---------------------------------------------------TGT-T---------------------------A--------------------------------------------TT-------TCT------G-------TG------------CAATCTCAGGCAGTACAGTGCCAGCACGAGCGTTGTGTGAGGTTACTGCTGGAAAATGATG
i tetNig2.chr13                C 0 C 0
s fr3.chr9                       3741224 124 -  13922460 ---------------------------------------CTGCTCAG--------------------------TG-----A--TTTG---------TT----G--------------------------AAGC------TTCTCAG-------------TAGTTGT---------------------------------------------------------------------TTCAGTAG-CACT-CA---------------------------------------------------CCG-T---------------------------A--------------------------------------------TT-------TCT------G-------TC------------CAATGTCAGGCAGTGCAGTGTCAGCATGAGCGCTGTGTAAGGATACTGCTGGAAAATCATG
i fr3.chr9                     C 0 C 0
s takFla1.KE120500                510966 124 +    663757 ---------------------------------------CTGCTCAG--------------------------TG-----A--TTTG---------TT----G--------------------------AAGC------TTCTCAG-------------TAGTTGT---------------------------------------------------------------------TTCAGTAG-CACT-CA---------------------------------------------------CCG-T---------------------------A--------------------------------------------TT-------TCT------G-------TC------------CAATGTCAGGCAGTGCAGTGTCAGCATGAGCGCTGTGTAAGGATACTGCTGGAAAATCATG
i takFla1.KE120500             C 0 C 0
s neoBri1.JH422276               4184974 117 -  16571924 ---------------------------------------gtaaaaat--------------------------ta-----a--tttt---------tc----c--------------------------tCAC------GTC--------------------TTGT---------------------------------------------------------------------TTTGGCC--CGTT-AA---------------------------------------------------TGT-T---------------------------A--------------------------------------------AT-------TCT-----CA-------TC------------TAATAACAGGCAGTTCAGGGCCAGCATGACAACTGTGTGAGCATACTGCTGGAAAATCATG
i neoBri1.JH422276             C 0 C 0
s hapBur1.JH425411               1656908 117 +   1983257 ---------------------------------------gtaaaaat--------------------------tc-----a--tttt---------tc----c--------------------------tCAC------GTC--------------------TTGT---------------------------------------------------------------------TTTGGCT--CGTT-AA---------------------------------------------------TGT-T---------------------------A--------------------------------------------AT-------TCT-----CA-------TC------------TAATAACAGGCAGTTCAGGGCCAGCATGACAACTGTGTGAGCATACTGCTGGAAAATCATG
i hapBur1.JH425411             C 0 C 0
s mayZeb1.JH720588               2493524 117 +   2778784 ---------------------------------------gtaaaaat--------------------------tc-----a--tttt---------tc----c--------------------------tcAC------GTC--------------------TTGT---------------------------------------------------------------------TTTGGCC--CGTT-AA---------------------------------------------------TGT-T---------------------------A--------------------------------------------AT-------TCT-----CA-------TC------------TAATAACAGGCAGTTCAGGGCCAGCATGACAACTGTGTGAGCATACTGCTGGAAAATCATG
i mayZeb1.JH720588             C 0 C 0
s punNye1.JH419232               4767560 117 +   5065651 ---------------------------------------gtaaaaat--------------------------ta-----a--tttt---------tc----c--------------------------tCAC------GTC--------------------TTGT---------------------------------------------------------------------TTTGGCC--CGTT-AA---------------------------------------------------TGT-T---------------------------A--------------------------------------------AT-------TCT-----CA-------TC------------TAATAACAGGCAGTTCAGGGCCAGCATGACAACTGTGTGAGCATACTGCTGGAAAATCATG
i punNye1.JH419232             C 0 C 0
s oryLat2.chr15                  8992819 119 +  30000224 ---------------------------------------ata-------------------------------tt-----a--tttt---------tt----t--------------------------cctt------gtttcca-------------TCTTAGT---------------------------------------------------------------------TTTGGTTGAGGTT-CT---------------------------------------------------GCG-T---------------------------G--------------------------------------------CT-------TCT------G-------TC------------T-CCAACAGGCAGTGCAGGGCCAGCACGAACGCTGTGTGAGCATTCTGCTGGAGAATCACG
i oryLat2.chr15                C 0 C 0
s astMex1.KB882082               3904575 170 -   8876373 ---------------------------------------agaatcag--------------------------tatatata--ttta---------tt----g--------------------------agat------GTTTTAAT---TAAGGACATTACTTGT---------------------------------------------------------------------GGCAACA--TGTT-TA-ATAGTGTGTGTGCCTCTTGATCATGTTTGTTG------------------TGT-T---------------------------A--------------------------------------------TC-------TCT------G-------GA------------TCTTGGCAGGCGGTGCAATGCCAGCAGGATCGCTGTGTGTCCATCCTTCTGGAACATGAGG
i astMex1.KB882082             C 0 C 0
e calJac3.chrUn_GL286234           16433   0 +    110629 C
e rheMac3.chr8                  61694530 4033 + 150158102 I
e saiBol1.JH378179               2755068   0 +  10880647 C
e chlSab2.chr8                  53288999 4669 + 139301422 I

a score=1535428.000000
s hg38.chr8_KI270814v1_alt         26084 43 +    141812 CTGATCCAAATGTTGTAGATGTCTGTTGCAACACTGCTCTCCA
s panTro4.chr8                  54967094 43 + 143986469 CTGATCCAAATGTTGTAGATGTCTGTTGCAACACTGCTCTCCA
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59008304 43 + 153482349 CTGATCCAAATGTTGTAGATGTCTGTTGCAACACTGCTCTCCA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48096267 35 + 100215132 cTGATCCAAATGTTGTAGATGTCTGTTGCAACACT--------
i nomLeu3.chr16                I 305 C 0
s macFas5.chr8                  58366761 43 + 146850525 TTGATCCAAATATTGCAGATGTCTATGGCATCACTGCTCTCCA
i macFas5.chr8                 C 0 C 0
s monDom5.chr8                 174086126 43 + 312544902 CAGACCCCAATGTTGTGGATATCGCAGGTGACACTGCCCTTCA
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    318949 43 -   4230514 CAGACCCTAATCTTGTGGACTCGAACAACAACACTGCACTTCA
i sarHar1.chr5_GL861647_random C 0 C 0
s macEug2.GL108065                 83763 43 -    187545 CAGACCCTAGTATTATGGATACCCACCACAACACTGCACTTCA
i macEug2.GL108065             C 0 C 0
s ornAna1.Ultra479               3871685 43 -   6008416 CAGACCCCAACCTTGTGGATGCCAAGCACAATACTGCCCTTCA
i ornAna1.Ultra479             C 0 C 0
s colLiv1.KB375358               1019500 43 +   1462937 CTGAACCAAATCTGGCAGATTCTGATGGCAACACTGCCCTGCA
i colLiv1.KB375358             C 0 C 0
s falChe1.KB398074               4263261 43 -   7151304 CCAACCCACATCTGGCAGATGCTGACGGCAACACTGCCCTTCA
i falChe1.KB398074             C 0 C 0
s falPer1.KB391107               2215878 43 -   3101084 CCAACCCACATCTGGCAGATGCTGACGGCAACACTGCCCTTCA
i falPer1.KB391107             C 0 C 0
s ficAlb2.chr1A                 24321171 43 +  74947036 CTGACCCAAATCTGGCAGATGCTGATGGCAACACTGCCCTTCA
i ficAlb2.chr1A                C 0 C 0
s zonAlb1.KB913045              12581874 43 +  16390125 CTGACCCCAATCTGGCAGATGCTGATGGCAACACTGCCCTTCA
i zonAlb1.KB913045             C 0 C 0
s geoFor1.JH739914               5157598 43 -   7168866 CTGACCCAGATCTGGCAGATGCTGATGGCAACACTGCCCTTCA
i geoFor1.JH739914             C 0 C 0
s taeGut2.chr1A                 23692525 43 +  73657157 CTGACCCAAATCTGGTAGATGCTGATGGCAACACTGCCCTTCA
i taeGut2.chr1A                C 0 C 0
s pseHum1.KB221193               9789253 43 +  32995986 CTGACCCAAATCTGGCAGATGCTGATGGCAACACTGCCCTTCA
i pseHum1.KB221193             C 0 C 0
s melUnd1.JH556589               7668397 43 -   7952740 CTGACCCGAATCTGGCTGATGCTGATGGCAACACTGCCCTTCA
i melUnd1.JH556589             C 0 C 0
s amaVit1.KB277496                  7354 43 -     10329 CCCAAACTGACCTCAGAGATTTTGCTGGCAACACTGCCCTTCA
i amaVit1.KB277496             C 0 C 0
s araMac1.KE026486                  3342 43 -     24340 CTGACCCAAATCTGGCAGATGTGGATGGGAATACTGCCCTTCA
i araMac1.KE026486             C 0 C 0
s anaPla1.KB743807                  5843 43 +     81650 CTGATCCAAACTTGGCAGATGCTAGTGGCAACACTGCCCTTCA
i anaPla1.KB743807             C 0 C 0
s galGal4.chr1                  24067507 43 + 195276750 CTGATCCGAACTTGGCAGATGCTAACGGCAACACTGCCCTTCA
i galGal4.chr1                 C 0 C 0
s melGal1.chr1                  24929224 43 + 204065131 CTGATCCGAACCTGGGAGATGCTAGCGGCAACACTGCCCTTCA
i melGal1.chr1                 C 0 C 0
s allMis1.JH737798                 79732 43 +    106177 CAGACCCTAATCTTGTTGATGCTAACTGCAACACGGCCCTTCA
i allMis1.JH737798             C 0 C 0
s cheMyd1.KB478633               2433536 43 +   6037886 CAGACCCTAATCTTGTGGATGTTAACAGCAGCACTGCCCTTCA
i cheMyd1.KB478633             C 0 C 0
s chrPic2.chr2                  18523465 43 -  68452538 CAGAACCTAATCTTGTGGATGTTAACAGCAACACTGCCCTTCA
i chrPic2.chr2                 C 0 C 0
s pelSin1.JH208680               8419166 43 -  16024077 CAGACCCTAATCTTGTGGATGTTAATAGCAACACTGCCTTTCA
i pelSin1.JH208680             C 0 C 0
s apaSpi1.KB929668               5961376 43 -  12308914 CAGACCCTAATCTTGTGGATGTTAACAGCAACACTGCCCTTCA
i apaSpi1.KB929668             C 0 C 0
s anoCar2.chrUn_GL344195           44130 43 +     59083 CAGACCCTGATCTTGTGGATGCATACAGTAACACTGCCCTCCA
i anoCar2.chrUn_GL344195       C 0 C 0
s tetNig2.chr13                  4299920 43 -  13302670 CTGACCCCAACCTGGTGGACATTGATGACAACACAGCTCTCCA
i tetNig2.chr13                C 0 C 0
s fr3.chr9                       3741348 43 -  13922460 CTGACCCCAATCTAGTGGACGTCGATGACAACACAGCCCTCCA
i fr3.chr9                     C 0 C 0
s takFla1.KE120500                511090 43 +    663757 CTGACCCCAATCTAGTGGACGTCGATGACAACACAGCCCTCCA
i takFla1.KE120500             C 0 C 0
s neoBri1.JH422276               4185091 43 -  16571924 CTGACCCTAATCTGATGGACATCAATGGCAATACGGCACTACA
i neoBri1.JH422276             C 0 T 338
s hapBur1.JH425411               1657025 43 +   1983257 CTGACCCTAATCTGATGGACATCAATGGCAATACGGCACTACA
i hapBur1.JH425411             C 0 T 338
s mayZeb1.JH720588               2493641 43 +   2778784 CTGACCCTAATCTGATGGACATCAATGGCAATACGGCACTACA
i mayZeb1.JH720588             C 0 T 338
s punNye1.JH419232               4767677 43 +   5065651 CTGACCCTAATCTGATGGACATCAATGGCAATACGGCACTACA
i punNye1.JH419232             C 0 T 338
s oryLat2.chr15                  8992938 43 +  30000224 CAGAGCCCAACGTGGTGGACGTCAATGGCAACACAGCCTTGCA
i oryLat2.chr15                C 0 C 0
s astMex1.KB882082               3904745 43 -   8876373 CCGATCCCAACCTGGTGGACATCAATGGCAACACAGCACTGCA
i astMex1.KB882082             C 0 C 0
e calJac3.chrUn_GL286234           16433  0 +    110629 C
e rheMac3.chr8                  61694530 4033 + 150158102 I
e saiBol1.JH378179               2755068  0 +  10880647 C
e chlSab2.chr8                  53288999 4669 + 139301422 I

a score=1393668.000000
s hg38.chr8_KI270814v1_alt         26127 81 +    141812 CGACGCTGTCTATAGTAAGAATATACAAAAGGTAGCAA-AACTGCTTTCACACAACCCAGACATTGAAGTGAAAAACAAGGT
s panTro4.chr8                  54967137 81 + 143986469 CGACGCTGTCTATAGGGAGAATATACAAAAGGTAGCAA-AACCGCTTTCACACAACCCAGACATTGAAGTGAAAAACAAGGT
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59008347 81 + 153482349 CAACGCTGTCTATAGTGAGAATATACAAAAGGTAGCAA-AACTGCTTTCACACAACCCAGACATTGAAGTGAAAAACAAGGT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48096302 65 + 100215132 ----------------AAGAATATACAAATGGTAGCAA-AACTGCTTTCACACAACCCAGACATCGAAGTGAAAAACAAGGT
i nomLeu3.chr16                C 0 C 0
s macFas5.chr8                  58366804 81 + 146850525 C-CTGCTGTCTGTAATGAGAGTATGTCAAAGGTAACAACAACTGTTTTCATACAAGACAAACATCGAAGTGAAAAACGATGT
i macFas5.chr8                 C 0 C 0
s monDom5.chr8                 174086169 81 + 312544902 CTACTCTGCCCTCAGTCACAACACAACCATAGCAGCAA-AGCTGCTTGAACACAAAGCTGATATTGAAGCTAAAAACCAGGT
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    318992 81 -   4230514 CTATGCTGCCTCTGGTCAGAACAAAGCCATAGCAGCAC-AGCTGCTTAAACATAAAGGTGATATTGAAGCAAAAAACAAGGT
i sarHar1.chr5_GL861647_random C 0 C 0
s macEug2.GL108065                 83806 81 -    187545 CTATGCTGCCTCTGGACATAACATAATGATAACAGCAA-AGCTGCTTAGATATAAAATAGAAATGGAAGCAAAAAACAAGGT
i macEug2.GL108065             C 0 C 0
s ornAna1.Ultra479               3871728 81 -   6008416 TTACGCTGCCTTAATTCCGAATGTATCTTTAGCAGGAC-ATCTGCTTGAACACCGAGCTCATATTGACGTGCAAAACCAGGT
i ornAna1.Ultra479             C 0 C 0
s colLiv1.KB375358               1019543 81 +   1462937 TCTGTCTGTCATCTCTCCTAATACAACTGTGGCAGAGC-TGCTACTTGATTATGATGCCAATATTGAGGCCCAGAATAAGgt
i colLiv1.KB375358             C 0 C 0
s falChe1.KB398074               4263304 81 -   7151304 CCTTGCTGTCCGGTGTCCGAACACAACTGTAGCGGGGC-TCTTACTTGAGTATAATGCCAATATTGATGCTCAGAATAAGgt
i falChe1.KB398074             C 0 C 0
s falPer1.KB391107               2215921 81 -   3101084 CCTTGCTGTCCGGTGTCCGAACACAACTGTAGCGGGGC-TCTTACTTGAGTATAATGCCAATATTGATGCTCAGAATAAGgt
i falPer1.KB391107             C 0 C 0
s ficAlb2.chr1A                 24321214 81 +  74947036 CCTGGCTGTCCTGTCTAGTAATACTACTGTAGCAGGGT-TGTTACTTGAGCACAATGCCAATATTGATTCCCAAAATAAGgt
i ficAlb2.chr1A                C 0 C 0
s zonAlb1.KB913045              12581917 81 +  16390125 CCTGGCTGTTCTGTCTGGCAATACTGCTGTAGCAGGGC-TCTTACTTCAGCATGATGCCAATATTGATGCCCAAAATAAggt
i zonAlb1.KB913045             C 0 C 0
s geoFor1.JH739914               5157641 81 -   7168866 CCTGGCTGTCCTGTCTGGTAATACTACTGTAGCAGGGC-TGTTACTTCAGCATAATGCCAATATTGATGCCCAAAATAAGgt
i geoFor1.JH739914             C 0 C 0
s taeGut2.chr1A                 23692568 81 +  73657157 TCTGGCTGTCCTGTCTGGTAATACTACTGTAGCAGGGC-TGTTACTTCAGCATGATGCCAATATTGATGCCCAAAATAAGGT
i taeGut2.chr1A                C 0 C 0
s pseHum1.KB221193               9789296 81 +  32995986 CCTGGCTGTCCTGCCTGGTAATACTACTGTAGCAGGGC-TGTTACTTGAGCATAATGCCAATATTGATGCCCAAAATAAggt
i pseHum1.KB221193             C 0 C 0
s melUnd1.JH556589               7668440 81 -   7952740 CCTGGCTGTCCTGTCTACTAATACAACTGTAGCAGGGC-TCTTACTCGAGCATAATGCCGATATTGATGCTCAGAACAAGGT
i melUnd1.JH556589             C 0 C 0
s amaVit1.KB277496                  7397 81 -     10329 CCTGGCTACCTTAGCAAAGAGCAAACGTCTAGTGGAGC-TGTTACTGGAGCACAATGCCCATATTGATGCTTCAAATAAGGT
i amaVit1.KB277496             C 0 C 0
s araMac1.KE026486                  3385 81 -     24340 TCTTGCTGTTATATCTCCTAATACATCTGTAGCAGGGC-TATTACTTGAGCATAATGCCAATATTGATGCCCAGAATAAGGT
i araMac1.KE026486             C 0 C 0
s anaPla1.KB743807                  5886 81 +     81650 cttggctgctgcagctccgaATGCATCTCTAGCAGAGA-TGTTACTTGAGCATAATGCCCATATCGATGCTCAAAATAAGGT
i anaPla1.KB743807             C 0 C 0
s galGal4.chr1                  24067550 81 + 195276750 CCTGGCTGCTGTAGCTCCTAACACATTTCTAGCAGGGA-TGTTAATTGAGCACAATGCCCATATTGATGCTCAGAATAAGGT
i galGal4.chr1                 C 0 C 0
s melGal1.chr1                  24929267 81 + 204065131 CCTGGCTGCTGTAGCTCCTAACACATTTCTGGCGGGGA-TATTAATTGAGCACAATGCCCATATTGATGCTCAGAATAAGGT
i melGal1.chr1                 C 0 C 0
s allMis1.JH737798                 79775 81 +    106177 CTTTGCTGCCTGTATTCCTAATATATCTCTAGCAATAG-AGTTACTTGAGCATGATGCTGATATTGATGCACAAAATAAGGT
i allMis1.JH737798             C 0 C 0
s cheMyd1.KB478633               2433579 81 +   6037886 TCTGGCTGCCCAGACTGCTAATATATCTCTAGCAGTAC-TATTGCTTGAGTACAATGCCCATATTGAAGCACAGAATAAGGT
i cheMyd1.KB478633             C 0 C 0
s chrPic2.chr2                  18523508 81 -  68452538 CCTGGCTGCCCAGACTGCTAATATATCTCTAGTAGTAC-AATTGCTTGAGTACAATGCCCATATTGATTCGCAGAATAAGGT
i chrPic2.chr2                 C 0 C 0
s pelSin1.JH208680               8419209 81 -  16024077 CCTGGCTGCTCATACTGCTAATATATCTCTAGCAGTAC-AATTGCTTGAGTACAATGCCCATATTGATGCACAGAATAAGGT
i pelSin1.JH208680             C 0 C 0
s apaSpi1.KB929668               5961419 81 -  12308914 CCTGGCTGCTCATACTGCTAATATATCTCTAGCAGTAC-AATTGCTTGAGTACAATGCCCAAATCGATGCACAGAATAAGGT
i apaSpi1.KB929668             C 0 C 0
s anoCar2.chrUn_GL344195           44173 81 +     59083 CTTTGCTGCCTTTAATTCTAGCATATCAATAGCAAAGC-ATCTCCTTGAATATAATGCCAATGTTGAAGCACAGAATAAGGT
i anoCar2.chrUn_GL344195       C 0 C 0
s tetNig2.chr13                  4299963 81 -  13302670 TTTAGCAGCTAGCATCCCTTCCATTTCAACGGCTGTTT-TGCTGCTGAAGCACGATGCTGACATTGATGCACAAAATAAGGT
i tetNig2.chr13                C 0 T 851
s fr3.chr9                       3741391 81 -  13922460 TTTAGCAGCAAACATCCCTTCCATTTCAACTGCTGTCT-TGCTGCTTGAGCATGATGCTGACATTGATGCACAAAATAAGGT
i fr3.chr9                     C 0 T 428
s takFla1.KE120500                511133 81 +    663757 TTTAGCAGCAAACATCCCTTCCATTTCAACTGCTGTCT-TGCTGCTTGAGCATGATGCTGACATTGATGCACAAAATAAGGT
i takFla1.KE120500             C 0 T 428
s oryLat2.chr15                  8992981 81 +  30000224 TTTAGCTGCAAACATCCCATCCATATCCACAGCGGTGT-TACTGCTGCAGCATGGAGCTGAAATCGACGCACAGAATAAGGT
i oryLat2.chr15                C 0 N 0
s astMex1.KB882082               3904788 81 -   8876373 TTTGGCTGCCCGTATCCCCTCCCTGTCTGTGGCCTTGC-AGCTCCTGGAACATGAGGCTAACATCAACGCCCAGAACAAGGT
i astMex1.KB882082             C 0 C 0
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e calJac3.chrUn_GL286234           16433  0 +    110629 C
e rheMac3.chr8                  61694530 4033 + 150158102 I
e saiBol1.JH378179               2755068  0 +  10880647 C
e chlSab2.chr8                  53288999 4669 + 139301422 I

a score=32762.000000
s hg38.chr8_KI270814v1_alt         26208 1 +    141812 A
s panTro4.chr8                  54967218 1 + 143986469 A
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59008428 1 + 153482349 A
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48096367 1 + 100215132 A
i nomLeu3.chr16                C 0 C 0
s macFas5.chr8                  58366885 1 + 146850525 A
i macFas5.chr8                 C 0 C 0
s monDom5.chr8                 174086250 1 + 312544902 A
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    319073 1 -   4230514 A
i sarHar1.chr5_GL861647_random C 0 C 0
s macEug2.GL108065                 83887 1 -    187545 A
i macEug2.GL108065             C 0 T 651
s ornAna1.Ultra479               3871809 1 -   6008416 A
i ornAna1.Ultra479             C 0 C 0
s colLiv1.KB375358               1019624 1 +   1462937 a
i colLiv1.KB375358             C 0 C 0
s falChe1.KB398074               4263385 1 -   7151304 a
i falChe1.KB398074             C 0 C 0
s falPer1.KB391107               2216002 1 -   3101084 a
i falPer1.KB391107             C 0 C 0
s ficAlb2.chr1A                 24321295 1 +  74947036 g
i ficAlb2.chr1A                C 0 C 0
s zonAlb1.KB913045              12581998 1 +  16390125 a
i zonAlb1.KB913045             C 0 C 0
s geoFor1.JH739914               5157722 1 -   7168866 a
i geoFor1.JH739914             C 0 C 0
s taeGut2.chr1A                 23692649 1 +  73657157 A
i taeGut2.chr1A                C 0 C 0
s pseHum1.KB221193               9789377 1 +  32995986 a
i pseHum1.KB221193             C 0 C 0
s melUnd1.JH556589               7668521 1 -   7952740 A
i melUnd1.JH556589             C 0 I 5
s amaVit1.KB277496                  7478 1 -     10329 A
i amaVit1.KB277496             C 0 T 640
s araMac1.KE026486                  3466 1 -     24340 A
i araMac1.KE026486             C 0 I 6
s anaPla1.KB743807                  5967 1 +     81650 A
i anaPla1.KB743807             C 0 I 6
s galGal4.chr1                  24067631 1 + 195276750 A
i galGal4.chr1                 C 0 T 655
s melGal1.chr1                  24929348 1 + 204065131 A
i melGal1.chr1                 C 0 I 6
s allMis1.JH737798                 79856 1 +    106177 A
i allMis1.JH737798             C 0 I 5
s cheMyd1.KB478633               2433660 1 +   6037886 A
i cheMyd1.KB478633             C 0 T 653
s chrPic2.chr2                  18523589 1 -  68452538 A
i chrPic2.chr2                 C 0 T 672
s pelSin1.JH208680               8419290 1 -  16024077 A
i pelSin1.JH208680             C 0 C 0
s apaSpi1.KB929668               5961500 1 -  12308914 A
i apaSpi1.KB929668             C 0 C 0
s anoCar2.chrUn_GL344195           44254 1 +     59083 A
i anoCar2.chrUn_GL344195       C 0 C 0
s astMex1.KB882082               3904869 1 -   8876373 G
i astMex1.KB882082             C 0 C 0
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e calJac3.chrUn_GL286234           16433 0 +    110629 C
e rheMac3.chr8                  61694530 4033 + 150158102 I
e saiBol1.JH378179               2755068 0 +  10880647 C
e chlSab2.chr8                  53288999 4669 + 139301422 I

a score=3782.000000
s hg38.chr8_KI270814v1_alt         26209 1 +    141812 G
s panTro4.chr8                  54967219 1 + 143986469 G
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59008429 1 + 153482349 G
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48096368 1 + 100215132 G
i nomLeu3.chr16                C 0 C 0
s macFas5.chr8                  58366886 1 + 146850525 G
i macFas5.chr8                 C 0 C 0
s monDom5.chr8                 174086251 1 + 312544902 G
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    319074 1 -   4230514 G
i sarHar1.chr5_GL861647_random C 0 C 0
s ornAna1.Ultra479               3871810 1 -   6008416 G
i ornAna1.Ultra479             C 0 T 995
s melUnd1.JH556589               7668527 1 -   7952740 G
i melUnd1.JH556589             I 5 C 0
s araMac1.KE026486                  3473 1 -     24340 T
i araMac1.KE026486             I 6 C 0
s anaPla1.KB743807                  5974 1 +     81650 G
i anaPla1.KB743807             I 6 C 0
s melGal1.chr1                  24929355 1 + 204065131 G
i melGal1.chr1                 I 6 C 0
s astMex1.KB882082               3904870 1 -   8876373 A
i astMex1.KB882082             C 0 C 0
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chr1A                 24321296 0 +  74947036 C
e anoCar2.chrUn_GL344195           44255 0 +     59083 C
e pseHum1.KB221193               9789378 0 +  32995986 C
e zonAlb1.KB913045              12581999 0 +  16390125 C
e colLiv1.KB375358               1019625 0 +   1462937 C
e allMis1.JH737798                 79857 5 +    106177 I
e falPer1.KB391107               2216003 0 -   3101084 C
e falChe1.KB398074               4263386 0 -   7151304 C
e macEug2.GL108065                 83888 651 -    187545 T
e galGal4.chr1                  24067632 655 + 195276750 T
e geoFor1.JH739914               5157723 0 -   7168866 C
e amaVit1.KB277496                  7479 640 -     10329 T
e apaSpi1.KB929668               5961501 0 -  12308914 C
e cheMyd1.KB478633               2433661 653 +   6037886 T
e chrPic2.chr2                  18523590 672 -  68452538 T
e pelSin1.JH208680               8419291 0 -  16024077 C
e calJac3.chrUn_GL286234           16433 0 +    110629 C
e taeGut2.chr1A                 23692650 0 +  73657157 C
e rheMac3.chr8                  61694530 4033 + 150158102 I
e saiBol1.JH378179               2755068 0 +  10880647 C
e chlSab2.chr8                  53288999 4669 + 139301422 I

a score=18459.000000
s hg38.chr8_KI270814v1_alt         26210 1 +    141812 A
s panTro4.chr8                  54967220 1 + 143986469 A
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59008430 1 + 153482349 A
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48096369 1 + 100215132 A
i nomLeu3.chr16                C 0 C 0
s macFas5.chr8                  58366887 1 + 146850525 A
i macFas5.chr8                 C 0 C 0
s monDom5.chr8                 174086252 1 + 312544902 A
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    319075 1 -   4230514 A
i sarHar1.chr5_GL861647_random C 0 C 0
s colLiv1.KB375358               1019625 1 +   1462937 a
i colLiv1.KB375358             C 0 I 7
s falChe1.KB398074               4263386 1 -   7151304 a
i falChe1.KB398074             C 0 I 7
s falPer1.KB391107               2216003 1 -   3101084 a
i falPer1.KB391107             C 0 I 7
s ficAlb2.chr1A                 24321296 1 +  74947036 a
i ficAlb2.chr1A                C 0 I 7
s zonAlb1.KB913045              12581999 1 +  16390125 a
i zonAlb1.KB913045             C 0 I 6
s geoFor1.JH739914               5157723 1 -   7168866 a
i geoFor1.JH739914             C 0 I 6
s taeGut2.chr1A                 23692650 1 +  73657157 A
i taeGut2.chr1A                C 0 T 539
s pseHum1.KB221193               9789378 1 +  32995986 a
i pseHum1.KB221193             C 0 I 7
s melUnd1.JH556589               7668528 1 -   7952740 G
i melUnd1.JH556589             C 0 C 0
s araMac1.KE026486                  3474 1 -     24340 A
i araMac1.KE026486             C 0 C 0
s anaPla1.KB743807                  5975 1 +     81650 A
i anaPla1.KB743807             C 0 C 0
s melGal1.chr1                  24929356 1 + 204065131 A
i melGal1.chr1                 C 0 C 0
s allMis1.JH737798                 79862 1 +    106177 A
i allMis1.JH737798             I 5 I 1
s anoCar2.chrUn_GL344195           44255 1 +     59083 A
i anoCar2.chrUn_GL344195       C 0 I 1
s astMex1.KB882082               3904871 1 -   8876373 A
i astMex1.KB882082             C 0 C 0
e ornAna1.Ultra479               3871811 995 -   6008416 T
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e macEug2.GL108065                 83888 651 -    187545 T
e galGal4.chr1                  24067632 655 + 195276750 T
e amaVit1.KB277496                  7479 640 -     10329 T
e apaSpi1.KB929668               5961501 0 -  12308914 C
e cheMyd1.KB478633               2433661 653 +   6037886 T
e chrPic2.chr2                  18523590 672 -  68452538 T
e pelSin1.JH208680               8419291 0 -  16024077 C
e calJac3.chrUn_GL286234           16433 0 +    110629 C
e rheMac3.chr8                  61694530 4033 + 150158102 I
e saiBol1.JH378179               2755068 0 +  10880647 C
e chlSab2.chr8                  53288999 4669 + 139301422 I

a score=-8513.000000
s hg38.chr8_KI270814v1_alt         26211 15 +    141812 GATCAACCAATGTTA------
s panTro4.chr8                  54967221 15 + 143986469 GATCAACCAATGTTA------
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59008431 15 + 153482349 GATCAACAAATGTTA------
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48096370 15 + 100215132 GATCAACCAATGTTA------
i nomLeu3.chr16                C 0 C 0
s macFas5.chr8                  58366888 15 + 146850525 GATCAACCATTGTTA------
i macFas5.chr8                 C 0 C 0
s monDom5.chr8                 174086253 15 + 312544902 GGCCCACCTTTTGAA------
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    319076 15 -   4230514 AGCCCACTTCTTgta------
i sarHar1.chr5_GL861647_random C 0 C 0
s colLiv1.KB375358               1019633  9 +   1462937 ------tatttgtta------
i colLiv1.KB375358             I 7 I 1
s falChe1.KB398074               4263394  9 -   7151304 ------tatttgtta------
i falChe1.KB398074             I 7 I 1
s falPer1.KB391107               2216011  9 -   3101084 ------tatttgtta------
i falPer1.KB391107             I 7 I 1
s ficAlb2.chr1A                 24321304  9 +  74947036 ------tatttgtta------
i ficAlb2.chr1A                I 7 I 1
s zonAlb1.KB913045              12582006  9 +  16390125 ------tatttgtta------
i zonAlb1.KB913045             I 6 I 1
s geoFor1.JH739914               5157730  9 -   7168866 ------tatttgtta------
i geoFor1.JH739914             I 6 I 1
s pseHum1.KB221193               9789386  9 +  32995986 ------tatttgtta------
i pseHum1.KB221193             I 7 I 1
s melUnd1.JH556589               7668529  9 -   7952740 ------CATTTGGTA------
i melUnd1.JH556589             C 0 I 1
s araMac1.KE026486                  3475  9 -     24340 ------GATTTGTTA------
i araMac1.KE026486             C 0 I 1
s anaPla1.KB743807                  5976  9 +     81650 ------GATTTGTTA------
i anaPla1.KB743807             C 0 I 7
s melGal1.chr1                  24929357  9 + 204065131 ------GATTTGTTA------
i melGal1.chr1                 C 0 T 674
s allMis1.JH737798                 79864  7 +    106177 --------TTTCAGA------
i allMis1.JH737798             I 1 I 9
s pelSin1.JH208680               8419291  8 -  16024077 -------ACTGCTTA------
i pelSin1.JH208680             C 0 C 0
s apaSpi1.KB929668               5961501  8 -  12308914 -------ACTGCTTA------
i apaSpi1.KB929668             C 0 C 0
s anoCar2.chrUn_GL344195           44257 13 +     59083 --GCGCACCTTTTTA------
i anoCar2.chrUn_GL344195       I 1 I 30
s astMex1.KB882082               3904872 15 -   8876373 ------GCCTCAGCAGGGATC
i astMex1.KB882082             C 0 C 0
e ornAna1.Ultra479               3871811 995 -   6008416 T
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e macEug2.GL108065                 83888 651 -    187545 T
e galGal4.chr1                  24067632 655 + 195276750 T
e amaVit1.KB277496                  7479 640 -     10329 T
e cheMyd1.KB478633               2433661 653 +   6037886 T
e chrPic2.chr2                  18523590 672 -  68452538 T
e calJac3.chrUn_GL286234           16433  0 +    110629 C
e taeGut2.chr1A                 23692651 539 +  73657157 T
e rheMac3.chr8                  61694530 4033 + 150158102 I
e saiBol1.JH378179               2755068  0 +  10880647 C
e chlSab2.chr8                  53288999 4669 + 139301422 I

a score=-11016.000000
s hg38.chr8_KI270814v1_alt         26226 2 +    141812 TT-
s panTro4.chr8                  54967236 2 + 143986469 TT-
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59008446 2 + 153482349 TT-
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48096385 2 + 100215132 TT-
i nomLeu3.chr16                C 0 C 0
s macFas5.chr8                  58366903 2 + 146850525 TT-
i macFas5.chr8                 C 0 C 0
s monDom5.chr8                 174086268 2 + 312544902 TA-
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    319091 2 -   4230514 ta-
i sarHar1.chr5_GL861647_random C 0 C 0
s colLiv1.KB375358               1019643 1 +   1462937 -g-
i colLiv1.KB375358             I 1 I 8
s falChe1.KB398074               4263404 1 -   7151304 -g-
i falChe1.KB398074             I 1 I 8
s falPer1.KB391107               2216021 1 -   3101084 -g-
i falPer1.KB391107             I 1 I 8
s ficAlb2.chr1A                 24321314 1 +  74947036 -t-
i ficAlb2.chr1A                I 1 I 8
s zonAlb1.KB913045              12582016 1 +  16390125 -T-
i zonAlb1.KB913045             I 1 I 8
s geoFor1.JH739914               5157740 1 -   7168866 -T-
i geoFor1.JH739914             I 1 I 8
s pseHum1.KB221193               9789396 1 +  32995986 -t-
i pseHum1.KB221193             I 1 T 565
s melUnd1.JH556589               7668539 1 -   7952740 -A-
i melUnd1.JH556589             I 1 I 9
s araMac1.KE026486                  3485 1 -     24340 -A-
i araMac1.KE026486             I 1 I 9
s anaPla1.KB743807                  5992 1 +     81650 -T-
i anaPla1.KB743807             I 7 I 2
s allMis1.JH737798                 79880 1 +    106177 -T-
i allMis1.JH737798             I 9 C 0
s pelSin1.JH208680               8419299 2 -  16024077 TT-
i pelSin1.JH208680             C 0 C 0
s apaSpi1.KB929668               5961509 2 -  12308914 TT-
i apaSpi1.KB929668             C 0 C 0
s anoCar2.chrUn_GL344195           44300 2 +     59083 TT-
i anoCar2.chrUn_GL344195       I 30 C 0
s astMex1.KB882082               3904887 2 -   8876373 -TC
i astMex1.KB882082             C 0 C 0
e ornAna1.Ultra479               3871811 995 -   6008416 T
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e macEug2.GL108065                 83888 651 -    187545 T
e galGal4.chr1                  24067632 655 + 195276750 T
e melGal1.chr1                  24929366 674 + 204065131 T
e amaVit1.KB277496                  7479 640 -     10329 T
e cheMyd1.KB478633               2433661 653 +   6037886 T
e chrPic2.chr2                  18523590 672 -  68452538 T
e calJac3.chrUn_GL286234           16433 0 +    110629 C
e taeGut2.chr1A                 23692651 539 +  73657157 T
e rheMac3.chr8                  61694530 4033 + 150158102 I
e saiBol1.JH378179               2755068 0 +  10880647 C
e chlSab2.chr8                  53288999 4669 + 139301422 I

a score=42562.000000
s hg38.chr8_KI270814v1_alt         26228 7 +    141812 TTCAAAA
s panTro4.chr8                  54967238 7 + 143986469 TTCAAAA
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59008448 7 + 153482349 TTCAAAA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48096387 7 + 100215132 TTCAAAA
i nomLeu3.chr16                C 0 C 0
s macFas5.chr8                  58366905 7 + 146850525 TTCAAAA
i macFas5.chr8                 C 0 C 0
s monDom5.chr8                 174086270 3 + 312544902 AGA----
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    319093 7 -   4230514 ataaaag
i sarHar1.chr5_GL861647_random C 0 C 0
s colLiv1.KB375358               1019652 7 +   1462937 TTCAAGA
i colLiv1.KB375358             I 8 I 5
s falChe1.KB398074               4263413 7 -   7151304 TTCAGAA
i falChe1.KB398074             I 8 I 5
s falPer1.KB391107               2216030 7 -   3101084 TTCAGAA
i falPer1.KB391107             I 8 I 5
s ficAlb2.chr1A                 24321323 7 +  74947036 TTCCAAA
i ficAlb2.chr1A                I 8 I 5
s zonAlb1.KB913045              12582025 7 +  16390125 TTCCAAA
i zonAlb1.KB913045             I 8 I 5
s geoFor1.JH739914               5157749 7 -   7168866 TTCCAAA
i geoFor1.JH739914             I 8 I 5
s melUnd1.JH556589               7668549 6 -   7952740 -TTGAAA
i melUnd1.JH556589             I 9 I 3
s araMac1.KE026486                  3495 6 -     24340 -TCAGAA
i araMac1.KE026486             I 9 I 5
s anaPla1.KB743807                  5995 7 +     81650 TCCAAAA
i anaPla1.KB743807             I 2 I 5
s allMis1.JH737798                 79881 7 +    106177 TTCAAAC
i allMis1.JH737798             C 0 I 6
s pelSin1.JH208680               8419301 7 -  16024077 TTCAGAA
i pelSin1.JH208680             C 0 T 1978
s apaSpi1.KB929668               5961511 7 -  12308914 TTcagaa
i apaSpi1.KB929668             C 0 T 314
s anoCar2.chrUn_GL344195           44302 7 +     59083 TTTGTAC
i anoCar2.chrUn_GL344195       C 0 I 12
s astMex1.KB882082               3904889 7 -   8876373 ATCAGGA
i astMex1.KB882082             C 0 C 0
e ornAna1.Ultra479               3871811 995 -   6008416 T
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e pseHum1.KB221193               9789397 565 +  32995986 T
e macEug2.GL108065                 83888 651 -    187545 T
e galGal4.chr1                  24067632 655 + 195276750 T
e melGal1.chr1                  24929366 674 + 204065131 T
e amaVit1.KB277496                  7479 640 -     10329 T
e cheMyd1.KB478633               2433661 653 +   6037886 T
e chrPic2.chr2                  18523590 672 -  68452538 T
e calJac3.chrUn_GL286234           16433 0 +    110629 C
e taeGut2.chr1A                 23692651 539 +  73657157 T
e rheMac3.chr8                  61694530 4033 + 150158102 I
e saiBol1.JH378179               2755068 0 +  10880647 C
e chlSab2.chr8                  53288999 4669 + 139301422 I

a score=-34260.000000
s hg38.chr8_KI270814v1_alt         26235 9 +    141812 --------TATTTGAAA
s panTro4.chr8                  54967245 9 + 143986469 --------TATTTGAAA
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59008455 9 + 153482349 --------TATTTGAAA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48096394 9 + 100215132 --------TATTTGAAA
i nomLeu3.chr16                C 0 C 0
s macFas5.chr8                  58366912 9 + 146850525 --------TATTTGAAA
i macFas5.chr8                 C 0 C 0
s monDom5.chr8                 174086273 9 + 312544902 --------CATTTTATA
i monDom5.chr8                 C 0 I 15
s sarHar1.chr5_GL861647_random    319100 9 -   4230514 --------tattttaca
i sarHar1.chr5_GL861647_random C 0 N 0
s colLiv1.KB375358               1019664 3 +   1462937 --------cat------
i colLiv1.KB375358             I 5 C 0
s falChe1.KB398074               4263425 3 -   7151304 --------CAT------
i falChe1.KB398074             I 5 C 0
s falPer1.KB391107               2216042 3 -   3101084 --------CAT------
i falPer1.KB391107             I 5 C 0
s ficAlb2.chr1A                 24321335 3 +  74947036 --------CAT------
i ficAlb2.chr1A                I 5 C 0
s zonAlb1.KB913045              12582037 3 +  16390125 --------CAT------
i zonAlb1.KB913045             I 5 C 0
s geoFor1.JH739914               5157761 3 -   7168866 --------tgt------
i geoFor1.JH739914             I 5 C 0
s melUnd1.JH556589               7668558 3 -   7952740 --------TGC------
i melUnd1.JH556589             I 3 C 0
s araMac1.KE026486                  3506 3 -     24340 --------TGT------
i araMac1.KE026486             I 5 C 0
s anaPla1.KB743807                  6007 3 +     81650 --------cat------
i anaPla1.KB743807             I 5 C 0
s allMis1.JH737798                 79894 3 +    106177 --------TAT------
i allMis1.JH737798             I 6 C 0
s anoCar2.chrUn_GL344195           44321 2 +     59083 --------AA-------
i anoCar2.chrUn_GL344195       I 12 I 1
s astMex1.KB882082               3904896 9 -   8876373 CTCCAGATT--------
i astMex1.KB882082             C 0 C 0
e ornAna1.Ultra479               3871811 995 -   6008416 T
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e pseHum1.KB221193               9789397 565 +  32995986 T
e macEug2.GL108065                 83888 651 -    187545 T
e galGal4.chr1                  24067632 655 + 195276750 T
e melGal1.chr1                  24929366 674 + 204065131 T
e amaVit1.KB277496                  7479 640 -     10329 T
e apaSpi1.KB929668               5961518 314 -  12308914 T
e cheMyd1.KB478633               2433661 653 +   6037886 T
e chrPic2.chr2                  18523590 672 -  68452538 T
e pelSin1.JH208680               8419308 1978 -  16024077 T
e calJac3.chrUn_GL286234           16433 0 +    110629 C
e taeGut2.chr1A                 23692651 539 +  73657157 T
e rheMac3.chr8                  61694530 4033 + 150158102 I
e saiBol1.JH378179               2755068 0 +  10880647 C
e chlSab2.chr8                  53288999 4669 + 139301422 I

a score=-1823.000000
s hg38.chr8_KI270814v1_alt     26244 2 +    141812 -TC
s panTro4.chr8              54967254 2 + 143986469 -TC
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59008464 2 + 153482349 -TC
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48096403 2 + 100215132 -TC
i nomLeu3.chr16            C 0 C 0
s macFas5.chr8              58366921 2 + 146850525 -TC
i macFas5.chr8             C 0 C 0
s monDom5.chr8             174086297 2 + 312544902 -TC
i monDom5.chr8             I 15 C 0
s colLiv1.KB375358           1019667 2 +   1462937 -ta
i colLiv1.KB375358         C 0 I 1
s falChe1.KB398074           4263428 2 -   7151304 -TA
i falChe1.KB398074         C 0 I 1
s falPer1.KB391107           2216045 2 -   3101084 -TA
i falPer1.KB391107         C 0 I 1
s ficAlb2.chr1A             24321338 2 +  74947036 -TC
i ficAlb2.chr1A            C 0 I 1
s zonAlb1.KB913045          12582040 2 +  16390125 -TC
i zonAlb1.KB913045         C 0 I 1
s geoFor1.JH739914           5157764 2 -   7168866 -tt
i geoFor1.JH739914         C 0 I 1
s melUnd1.JH556589           7668561 2 -   7952740 -CA
i melUnd1.JH556589         C 0 I 1
s araMac1.KE026486              3509 2 -     24340 -TA
i araMac1.KE026486         C 0 I 1
s anaPla1.KB743807              6010 2 +     81650 -ta
i anaPla1.KB743807         C 0 I 1
s allMis1.JH737798             79897 2 +    106177 -TT
i allMis1.JH737798         C 0 I 1
s astMex1.KB882082           3904905 2 -   8876373 AC-
i astMex1.KB882082         C 0 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e anoCar2.chrUn_GL344195       44323 1 +     59083 I
e pseHum1.KB221193           9789397 565 +  32995986 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e melGal1.chr1              24929366 674 + 204065131 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e calJac3.chrUn_GL286234       16433 0 +    110629 C
e taeGut2.chr1A             23692651 539 +  73657157 T
e rheMac3.chr8              61694530 4033 + 150158102 I
e saiBol1.JH378179           2755068 0 +  10880647 C
e chlSab2.chr8              53288999 4669 + 139301422 I

a score=2715.000000
s hg38.chr8_KI270814v1_alt     26246 9 +    141812 CATTTGtgt
s monDom5.chr8             174086299 9 + 312544902 AAGTAGTGT
i monDom5.chr8             C 0 C 0
s colLiv1.KB375358           1019670 9 +   1462937 tatttttct
i colLiv1.KB375358         I 1 I 2
s falChe1.KB398074           4263431 9 -   7151304 TATTTCTct
i falChe1.KB398074         I 1 I 3
s falPer1.KB391107           2216048 9 -   3101084 TATTTCtct
i falPer1.KB391107         I 1 I 3
s ficAlb2.chr1A             24321341 9 +  74947036 tatttttct
i ficAlb2.chr1A            I 1 C 0
s zonAlb1.KB913045          12582043 3 +  16390125 CA------A
i zonAlb1.KB913045         I 1 C 0
s geoFor1.JH739914           5157767 9 -   7168866 catttttct
i geoFor1.JH739914         I 1 C 0
s melUnd1.JH556589           7668564 8 -   7952740 -ACTCGTCT
i melUnd1.JH556589         I 1 I 10921
s araMac1.KE026486              3512 9 -     24340 TGCTTATCT
i araMac1.KE026486         I 1 I 2
s anaPla1.KB743807              6013 9 +     81650 tatttctgt
i anaPla1.KB743807         I 1 C 0
s allMis1.JH737798             79900 9 +    106177 AAGTTCAGT
i allMis1.JH737798         I 1 I 5
s anoCar2.chrUn_GL344195       44324 9 +     59083 AAGTTCTGG
i anoCar2.chrUn_GL344195   I 1 I 1
s astMex1.KB882082           3904907 7 -   8876373 --CTTTAGC
i astMex1.KB882082         C 0 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e melGal1.chr1              24929366 674 + 204065131 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e calJac3.chrUn_GL286234       16433 0 +    110629 C
e taeGut2.chr1A             23692651 539 +  73657157 T
e nomLeu3.chr16             48096405 0 + 100215132 C
e rheMac3.chr8              61694530 4033 + 150158102 I
e macFas5.chr8              58366923 0 + 146850525 C
e saiBol1.JH378179           2755068 0 +  10880647 C
e chlSab2.chr8              53288999 4669 + 139301422 I
e ponAbe2.chr8              59008466 0 + 153482349 C
e panTro4.chr8              54967256 0 + 143986469 C

a score=9308.000000
s hg38.chr8_KI270814v1_alt     26255 6 +    141812 aggggt
s monDom5.chr8             174086308 6 + 312544902 TTGGGT
i monDom5.chr8             C 0 N 0
s colLiv1.KB375358           1019681 5 +   1462937 -aaggt
i colLiv1.KB375358         I 2 I 1
s falChe1.KB398074           4263443 5 -   7151304 -agggt
i falChe1.KB398074         I 3 I 1
s falPer1.KB391107           2216060 5 -   3101084 -agggt
i falPer1.KB391107         I 3 I 1
s ficAlb2.chr1A             24321350 6 +  74947036 tgaagt
i ficAlb2.chr1A            C 0 T 629
s zonAlb1.KB913045          12582046 6 +  16390125 taaagt
i zonAlb1.KB913045         C 0 I 12
s geoFor1.JH739914           5157776 6 -   7168866 taaagt
i geoFor1.JH739914         C 0 I 11
s araMac1.KE026486              3523 6 -     24340 AAGGGT
i araMac1.KE026486         I 2 C 0
s anaPla1.KB743807              6022 6 +     81650 tgaaGA
i anaPla1.KB743807         C 0 C 0
s allMis1.JH737798             79914 5 +    106177 -AAGGG
i allMis1.JH737798         I 5 I 1
s anoCar2.chrUn_GL344195       44334 6 +     59083 AGAAAT
i anoCar2.chrUn_GL344195   I 1 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e astMex1.KB882082           3904914 0 -   8876373 C
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e melGal1.chr1              24929366 674 + 204065131 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e calJac3.chrUn_GL286234       16433 0 +    110629 C
e melUnd1.JH556589           7668572 10921 -   7952740 I
e taeGut2.chr1A             23692651 539 +  73657157 T
e nomLeu3.chr16             48096405 0 + 100215132 C
e rheMac3.chr8              61694530 4033 + 150158102 I
e macFas5.chr8              58366923 0 + 146850525 C
e saiBol1.JH378179           2755068 0 +  10880647 C
e chlSab2.chr8              53288999 4669 + 139301422 I
e ponAbe2.chr8              59008466 0 + 153482349 C
e panTro4.chr8              54967256 0 + 143986469 C

a score=-4257.000000
s hg38.chr8_KI270814v1_alt    26261 5 +    141812 gggtt--
s colLiv1.KB375358          1019687 3 +   1462937 --ggt--
i colLiv1.KB375358         I 1 C 0
s anaPla1.KB743807             6028 2 +     81650 ---GT--
i anaPla1.KB743807         C 0 T 614
s allMis1.JH737798            79920 5 +    106177 TGCAT--
i allMis1.JH737798         I 1 C 0
s anoCar2.chrUn_GL344195      44340 2 +     59083 ---GT--
i anoCar2.chrUn_GL344195   C 0 I 3
s astMex1.KB882082          3904914 3 -   8876373 ----TTT
i astMex1.KB882082         C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3529 0 -     24340 C
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582052 12 +  16390125 I
e falPer1.KB391107          2216065 1 -   3101084 I
e falChe1.KB398074          4263448 1 -   7151304 I
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157782 11 -   7168866 I
e melGal1.chr1             24929366 674 + 204065131 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e calJac3.chrUn_GL286234      16433 0 +    110629 C
e melUnd1.JH556589          7668572 10921 -   7952740 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e nomLeu3.chr16            48096405 0 + 100215132 C
e rheMac3.chr8             61694530 4033 + 150158102 I
e macFas5.chr8             58366923 0 + 146850525 C
e saiBol1.JH378179          2755068 0 +  10880647 C
e chlSab2.chr8             53288999 4669 + 139301422 I
e ponAbe2.chr8             59008466 0 + 153482349 C
e panTro4.chr8             54967256 0 + 143986469 C

a score=-13248.000000
s hg38.chr8_KI270814v1_alt    26266 6 +    141812 gccctt---
s colLiv1.KB375358          1019690 5 +   1462937 -gtgtt---
i colLiv1.KB375358         C 0 T 647
s falChe1.KB398074          4263449 2 -   7151304 ----tt---
i falChe1.KB398074         I 1 I 2
s falPer1.KB391107          2216066 2 -   3101084 ----tt---
i falPer1.KB391107         I 1 I 2
s zonAlb1.KB913045         12582064 5 +  16390125 -gggtt---
i zonAlb1.KB913045         I 12 C 0
s geoFor1.JH739914          5157793 5 -   7168866 -gggtt---
i geoFor1.JH739914         I 11 C 0
s araMac1.KE026486             3529 3 -     24340 ---gtt---
i araMac1.KE026486         C 0 I 3
s allMis1.JH737798            79925 3 +    106177 ---CCT---
i allMis1.JH737798         C 0 I 3
s anoCar2.chrUn_GL344195      44345 3 +     59083 ---ACT---
i anoCar2.chrUn_GL344195   I 3 I 4
s astMex1.KB882082          3904917 6 -   8876373 ---ATCCCA
i astMex1.KB882082         C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e calJac3.chrUn_GL286234      16433 0 +    110629 C
e melUnd1.JH556589          7668572 10921 -   7952740 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e nomLeu3.chr16            48096405 0 + 100215132 C
e rheMac3.chr8             61694530 4033 + 150158102 I
e macFas5.chr8             58366923 0 + 146850525 C
e saiBol1.JH378179          2755068 0 +  10880647 C
e chlSab2.chr8             53288999 4669 + 139301422 I
e ponAbe2.chr8             59008466 0 + 153482349 C
e panTro4.chr8             54967256 0 + 143986469 C

a score=-13012.000000
s hg38.chr8_KI270814v1_alt    26272 17 +    141812 ccacagctgtgggtgtt-
s falChe1.KB398074          4263453 12 -   7151304 -----tactttgatttt-
i falChe1.KB398074         I 2 I 17
s falPer1.KB391107          2216070 12 -   3101084 -----tactttgatttt-
i falPer1.KB391107         I 2 I 17
s zonAlb1.KB913045         12582069  9 +  16390125 -------tttttgttt--
i zonAlb1.KB913045         C 0 T 625
s geoFor1.JH739914          5157798 10 -   7168866 -------tttttgtttt-
i geoFor1.JH739914         C 0 T 631
s araMac1.KE026486             3535 12 -     24340 -----cattttgatttt-
i araMac1.KE026486         I 3 I 21
s allMis1.JH737798            79931 17 +    106177 ACAAAAACATTGTTCTC-
i allMis1.JH737798         I 3 I 1
s anoCar2.chrUn_GL344195      44352 11 +     59083 ------ACACTGCTCAT-
i anoCar2.chrUn_GL344195   I 4 I 7
s astMex1.KB882082          3904923 14 -   8876373 ----ACACAGCAGGTGTC
i astMex1.KB882082         C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e calJac3.chrUn_GL286234      16433  0 +    110629 C
e melUnd1.JH556589          7668572 10921 -   7952740 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e nomLeu3.chr16            48096405  0 + 100215132 C
e rheMac3.chr8             61694530 4033 + 150158102 I
e macFas5.chr8             58366923  0 + 146850525 C
e saiBol1.JH378179          2755068  0 +  10880647 C
e chlSab2.chr8             53288999 4669 + 139301422 I
e ponAbe2.chr8             59008466  0 + 153482349 C
e panTro4.chr8             54967256  0 + 143986469 C

a score=91.000000
s hg38.chr8_KI270814v1_alt    26289 1 +    141812 t
s astMex1.KB882082          3904937 1 -   8876373 T
i astMex1.KB882082         C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3547 21 -     24340 I
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44363 7 +     59083 I
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79948 1 +    106177 I
e falPer1.KB391107          2216082 17 -   3101084 I
e falChe1.KB398074          4263465 17 -   7151304 I
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e calJac3.chrUn_GL286234      16433 0 +    110629 C
e melUnd1.JH556589          7668572 10921 -   7952740 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e nomLeu3.chr16            48096405 0 + 100215132 C
e rheMac3.chr8             61694530 4033 + 150158102 I
e macFas5.chr8             58366923 0 + 146850525 C
e saiBol1.JH378179          2755068 0 +  10880647 C
e chlSab2.chr8             53288999 4669 + 139301422 I
e ponAbe2.chr8             59008466 0 + 153482349 C
e panTro4.chr8             54967256 0 + 143986469 C

a score=2466.000000
s hg38.chr8_KI270814v1_alt    26290 14 +    141812 cttgtaaggtggga
s falChe1.KB398074          4263482 14 -   7151304 CCTTTCAGGAGGGA
i falChe1.KB398074         I 17 T 646
s falPer1.KB391107          2216099 14 -   3101084 CCTTTCAGGAGGGA
i falPer1.KB391107         I 17 T 646
s araMac1.KE026486             3568 14 -     24340 CTTATCAGGAGGGA
i araMac1.KE026486         I 21 T 666
s allMis1.JH737798            79949 10 +    106177 -TTTTTGGGTT---
i allMis1.JH737798         I 1 I 2
s anoCar2.chrUn_GL344195      44370 14 +     59083 CCTAAAGGGTAATA
i anoCar2.chrUn_GL344195   I 7 C 0
s astMex1.KB882082          3904938 14 -   8876373 GATATATGGTGAGG
i astMex1.KB882082         C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e calJac3.chrUn_GL286234      16433  0 +    110629 C
e melUnd1.JH556589          7668572 10921 -   7952740 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e nomLeu3.chr16            48096405  0 + 100215132 C
e rheMac3.chr8             61694530 4033 + 150158102 I
e macFas5.chr8             58366923  0 + 146850525 C
e saiBol1.JH378179          2755068  0 +  10880647 C
e chlSab2.chr8             53288999 4669 + 139301422 I
e ponAbe2.chr8             59008466  0 + 153482349 C
e panTro4.chr8             54967256  0 + 143986469 C

a score=78.000000
s hg38.chr8_KI270814v1_alt    26304 2 +    141812 cg
s anoCar2.chrUn_GL344195      44384 2 +     59083 CA
i anoCar2.chrUn_GL344195   C 0 C 0
s astMex1.KB882082          3904952 1 -   8876373 -G
i astMex1.KB882082         C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79959 2 +    106177 I
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e calJac3.chrUn_GL286234      16433 0 +    110629 C
e melUnd1.JH556589          7668572 10921 -   7952740 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e nomLeu3.chr16            48096405 0 + 100215132 C
e rheMac3.chr8             61694530 4033 + 150158102 I
e macFas5.chr8             58366923 0 + 146850525 C
e saiBol1.JH378179          2755068 0 +  10880647 C
e chlSab2.chr8             53288999 4669 + 139301422 I
e ponAbe2.chr8             59008466 0 + 153482349 C
e panTro4.chr8             54967256 0 + 143986469 C

a score=1118.000000
s hg38.chr8_KI270814v1_alt    26306 8 +    141812 agagattt
s allMis1.JH737798            79961 8 +    106177 TTAGATTT
i allMis1.JH737798         I 2 C 0
s anoCar2.chrUn_GL344195      44386 6 +     59083 --AAAgtc
i anoCar2.chrUn_GL344195   C 0 C 0
s astMex1.KB882082          3904953 8 -   8876373 ATAGGTTT
i astMex1.KB882082         C 0 T 703
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e calJac3.chrUn_GL286234      16433 0 +    110629 C
e melUnd1.JH556589          7668572 10921 -   7952740 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e nomLeu3.chr16            48096405 0 + 100215132 C
e rheMac3.chr8             61694530 4033 + 150158102 I
e macFas5.chr8             58366923 0 + 146850525 C
e saiBol1.JH378179          2755068 0 +  10880647 C
e chlSab2.chr8             53288999 4669 + 139301422 I
e ponAbe2.chr8             59008466 0 + 153482349 C
e panTro4.chr8             54967256 0 + 143986469 C

a score=-704.000000
s hg38.chr8_KI270814v1_alt    26314 10 +    141812 ggaaaagaaa--
s allMis1.JH737798            79969 10 +    106177 TCAAAGGAGA--
i allMis1.JH737798         C 0 T 829
s anoCar2.chrUn_GL344195      44392 12 +     59083 atacataaaata
i anoCar2.chrUn_GL344195   C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e calJac3.chrUn_GL286234      16433  0 +    110629 C
e melUnd1.JH556589          7668572 10921 -   7952740 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e nomLeu3.chr16            48096405  0 + 100215132 C
e rheMac3.chr8             61694530 4033 + 150158102 I
e macFas5.chr8             58366923  0 + 146850525 C
e saiBol1.JH378179          2755068  0 +  10880647 C
e chlSab2.chr8             53288999 4669 + 139301422 I
e ponAbe2.chr8             59008466  0 + 153482349 C
e panTro4.chr8             54967256  0 + 143986469 C

a score=267.000000
s hg38.chr8_KI270814v1_alt    26324 14 +    141812 aagacacagagaca
s anoCar2.chrUn_GL344195      44404 14 +     59083 tatacacattgcCA
i anoCar2.chrUn_GL344195   C 0 T 8752
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e calJac3.chrUn_GL286234      16433  0 +    110629 C
e melUnd1.JH556589          7668572 10921 -   7952740 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e nomLeu3.chr16            48096405  0 + 100215132 C
e rheMac3.chr8             61694530 4033 + 150158102 I
e macFas5.chr8             58366923  0 + 146850525 C
e saiBol1.JH378179          2755068  0 +  10880647 C
e chlSab2.chr8             53288999 4669 + 139301422 I
e ponAbe2.chr8             59008466  0 + 153482349 C
e panTro4.chr8             54967256  0 + 143986469 C

a score=0.000000
s hg38.chr8_KI270814v1_alt    26338 873 +    141812 aagtatagagaaagaaataaggggacccggggaaccagcgttcagcatatggaggatcccgccagcctctgagttcccttagtatttattgatcatctgtgggtgtttctcgaagagggggatgtgtcagggtcacaagacaattgtggggagagggtcagcagacaaacacgtgaacaaaggtctttgcatcatagacaatgtaaaggattaagtgctgtgcttttagatatgcatacacataaacatctcaatgctttacaaagcagtattgctgcctgcaggtcctacttccagccctaaggcggtttttctctatctcagtagatggagcatacaatcaggttttataccgagacattccattgcccaaggacaggcaggagacagatgccttcctcttgtctcaactgcaagaggcattccttcctcttttactaatcctcctcagcacagaccctttatgggtgtcgggctgagggacaggtcaggtctttcctttcccacgaggccatatttcagactatcacatggggagaaaccttggacaatacctggctttcctaggcagaggtccctgcggccttctgcagtttttgtgtccctgagtacttgagattaaggagtggtgatgactcttaaggagcatgctgccttcaagcatctgtttaacaaagcacatcttgcaccgcccttaatccatttaactctgagtttgacacagcacatgtttcagagagcacgaggttgggggtgaggtcacagaatctcaaggcagaagaatttttcttagtacataacaaaatggagtctcctatgtctacttctttctacacagacacagtaacaatctgatctctcttgcttttcccc
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e calJac3.chrUn_GL286234      16433   0 +    110629 C
e melUnd1.JH556589          7668572 10921 -   7952740 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e nomLeu3.chr16            48096405   0 + 100215132 C
e rheMac3.chr8             61694530 4033 + 150158102 I
e macFas5.chr8             58366923   0 + 146850525 C
e saiBol1.JH378179          2755068   0 +  10880647 C
e chlSab2.chr8             53288999 4669 + 139301422 I
e ponAbe2.chr8             59008466   0 + 153482349 C
e panTro4.chr8             54967256   0 + 143986469 C

a score=151.000000
s hg38.chr8_KI270814v1_alt     27211 3 +    141812 aca
s monDom5.chr8             174690791 3 + 312544902 ATA
i monDom5.chr8             N 0 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e calJac3.chrUn_GL286234       16433 0 +    110629 C
e melUnd1.JH556589           7668572 10921 -   7952740 I
e taeGut2.chr1A             23692651 539 +  73657157 T
e nomLeu3.chr16             48096405 0 + 100215132 C
e rheMac3.chr8              61694530 4033 + 150158102 I
e macFas5.chr8              58366923 0 + 146850525 C
e saiBol1.JH378179           2755068 0 +  10880647 C
e chlSab2.chr8              53288999 4669 + 139301422 I
e ponAbe2.chr8              59008466 0 + 153482349 C
e panTro4.chr8              54967256 0 + 143986469 C

a score=67087.000000
s hg38.chr8_KI270814v1_alt     27214 86 +    141812 CATTTGTTTTAACATTGTCATATGTAG----GGGTCAGTTTTTCATATTTGGAAGCTCAAGC--T-CCCTGA--GTGAAAATATTTTAAAATAAC
s panTro4.chr8              54967256 86 + 143986469 CATTTGTTTTAACATTGTCATATGTAA----GGGTCAGTTTTTCATACTTGGAAGCTCAAGC--T-CCCTGA--GTGAAAATATTTTAAAATAAC
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59008466 86 + 153482349 CATTTGTTTTAACATTGACATATGTAA----GGGTCAGTTTTTCATATTTGGAAGCTCAAGC--T-CCCTGA--GTGAAAATATTTTAAAATAAC
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48096405 86 + 100215132 CATTTGTTTTAACATTGACACATGTAA----GGGTCAGTTTTTAATATTTGGAAGCTCAAGC--T-CCCTGA--GTGAAAATATTTTAAAATAAC
i nomLeu3.chr16            C 0 C 0
s macFas5.chr8              58366923 88 + 146850525 CACTTGTTTTAACATTGACATATGTAA----GGGTCAATTTTTCCTATTTGGAAGCTTAAGCAAT-CCCTAA--ATAAAAATAATTTGAAATAAT
i macFas5.chr8             C 0 I 5184
s monDom5.chr8             174690794 88 + 312544902 TTTATGTTTTTAAAATATCACAAATAACATGTGAATAATCTTTCAGGTTCAAGA----AAAC--TATCCTGAAGATGGCAGAACTTTTGAAGAA-
i monDom5.chr8             C 0 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e calJac3.chrUn_GL286234       16433  0 +    110629 C
e melUnd1.JH556589           7668572 10921 -   7952740 I
e taeGut2.chr1A             23692651 539 +  73657157 T
e rheMac3.chr8              61694530 4033 + 150158102 I
e saiBol1.JH378179           2755068  0 +  10880647 C
e chlSab2.chr8              53288999 4669 + 139301422 I

a score=5054.000000
s hg38.chr8_KI270814v1_alt     27300 7 +    141812 TGGGGTT
s panTro4.chr8              54967342 7 + 143986469 TGGGGTT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59008552 7 + 153482349 TGGGGTT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48096491 7 + 100215132 TGGGGTT
i nomLeu3.chr16            C 0 C 0
s macFas5.chr8              58372195 7 + 146850525 TGGGGAG
i macFas5.chr8             I 5184 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e calJac3.chrUn_GL286234       16433 0 +    110629 C
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr8             174690882 0 + 312544902 C
e taeGut2.chr1A             23692651 539 +  73657157 T
e rheMac3.chr8              61694530 4033 + 150158102 I
e saiBol1.JH378179           2755068 0 +  10880647 C
e chlSab2.chr8              53288999 4669 + 139301422 I

a score=344474.000000
s hg38.chr8_KI270814v1_alt     27307 215 +    141812 TAAGCATCACTGTAACAAAGATTTGTTGG-----TTCAGAGTTCGAGGAGA--------TCAGTAAAGAAAAG-TAGGAGTCCA------AGCCAGGTCTTGAA----------ATCTATTAGTTTTCTGCCCTGGGTGTGATT--GATGAGCTCAGAAAT--------AGGGGATAATCATGTTAT---CTAATT--TGATGAATTAATTTATAAATAAA---TTTTATTACAAATTATCAAATAGCCTAGATGCCCTGAAT
s panTro4.chr8              54967349 215 + 143986469 TAAGCATCATTGTAACAAAGATTTGTTGG-----TTCAAAGTTCGAGGAGA--------TCAGTAAAGAAAAG-TAGGAGTCCA------GGCCAGGTCTTGAA----------ATCTATTAGTTTTCTGCCCTGGGTGTGATT--GATGAGCTCAGAAAT--------AGGGGATAATCATGTTAT---CTAATT--TGATGaattaatttataaataaa---ttttattacaaattatCAAATAGCCTAGATGCCCTGAAT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59008559 215 + 153482349 TAAGCATCATTGTAACAAAGATTTGTTGG-----TTCAGAGTTCGAGGAGA--------TCAGTAAAGAAAAG-TAGGAGTCCA------AGCCAGGTCTTGAC----------ATCTATTAGTTTTCTGCCCTGGGTGTGATT--GATGAGCTCAGAAAT--------AGGGGATAATCATGTTAT---CTAATT--TGATGAATTAACTTATAAATAAA---TTTTATTACAAATTATCAAATAGCCTAGATGCCCTGAAT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48096498 215 + 100215132 TAAGCATCATTGTAACAAAGATTTGTTGG-----TTCAGAGTTCGAGGAGA--------TCAGTAAAGAAAAG-TAGGAGTCCA------AGCCAGGTCTTGAC----------ATCTATTAGTTTTCTGCCCTGGGTGTGATT--GATGAACTCAGAAAT--------AGGGGATAATCATGTTAT---CTAATT--TGATAAATTAATTTATAAATAAA---TTTTATTACAAATTATCAAATAGCCTAGATGTCCTGAAT
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8              61698563 213 + 150158102 TAAGCATTATTGCAACAAAGATTTGTTGG-----TTCAGAGTTTGGGTAGG--------TTGGTAAAGAGTAT-TAGGAGTCCA------AGCCAGGTCTTGAC----------ATCCAATAGTTTTCTGCTCTGGGTGTGATT--GACGAACTCAGCAAT--------AGGAGATAATCATGTTGT---CTACTT--TGATGaattaatatatttataaatatttttattacaaattatGAAA-----TAGATGCCCTGAAT
i rheMac3.chr8             I 4033 C 0
s macFas5.chr8              58372202 213 + 146850525 TAAGCATTATTGCAACAAAGATTTGTTGG-----TTCAGAGTTTGGGTAGG--------TTGGTAAAGAGTAT-TAGGAGTCCA------AGCCAGGTCTTGAC----------ATCCAATAGTTTTCTGCTCTGGGTGTGATT--GATGAACTCAGCAAT--------AGGAGATAATCATGTTGT---CTACTT--TGATGAATTAATATATTTATAAATATTTTTATTACAAATTATGAAA-----TAGATGCCCTGAAT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8              53293668 213 + 139301422 TAAGCATTATTGCAACAAAGATCTATTGG-----TTCAGAGTTTGGGTAGG--------TTGGCAAAAAATAT-TAGGAGTCCA------AGCCAGGTCTTGAC----------ATTCAATAGTTTTCTGCTCTGGGTATGATT--GATGAACTCAGCAAT--------AGGAGATAATCATGTTAT---CTAATT--TGATGAATTAATATACTTATAAATATTTTTATTACAAATTATAAAA-----TAGATACCCTGAAT
i chlSab2.chr8             I 4669 C 0
s monDom5.chr8             174690882 248 + 312544902 ------------TAAAAAAGACTTTTCTGTCATATTTAAAGTCTGCAGATAGAATAATTTTAAAAAAGTAAATCTCGGAGTTCATACTCCAACCTTGTTGTGACTAGCAAGGGAATTATTTTGCTTTCTTCTCTGAGTTTGCACAAGACTGCCTGAAAAATCAGCTTTCAAGGCCTTGTGAGATTACTGACTGGTTCATCATGCAAAAGCTTCTGACTAAC---TTTCATCAGAAACTGTTTGAAAGTTCAGATGCCCTAAGT
i monDom5.chr8             C 0 T 6776
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e calJac3.chrUn_GL286234       16433   0 +    110629 C
e melUnd1.JH556589           7668572 10921 -   7952740 I
e taeGut2.chr1A             23692651 539 +  73657157 T
e saiBol1.JH378179           2755068   0 +  10880647 C

a score=164175.000000
s hg38.chr8_KI270814v1_alt     27522 113 +    141812 CACAAGCCACAAAAAAATGGAACATCTAATAACCAAAAGTAGGACTTAATA--AGTTTCTGAAAACTACAACATTTGAATATTAGATCCTATGAAGAAACACACATTGGTTTTTT
s panTro4.chr8              54967564 113 + 143986469 CACAAGCCACAAAAAAATGGAACATCTAATAACCAAAAGTAGGACTTAATA--AGTTTCTGAAAACTACAACATTTGAATATTAGATCCTATGAAGAAACACACATTGGTTTCTT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59008774 113 + 153482349 CACAAGCCACAAAAAAATAGAACATCTAATAACCAAAAGTAGGACTTAATA--ACTTTCTGAAAACTACAGCATTTGAATATTAGATCCTATGAAGAAACACACATTGATTTTTT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48096713 112 + 100215132 CACAAGCCACAAAAAAATGGAACATCTAATAACCAAAAGTAGGACTTAATA--AGTTTCTGAAAACTATAACATTTGAATATTAGATCCTATGAAG-AACACACATTGGTGTTTT
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8              61698776 109 + 150158102 TACAAGTCAC-AAGGAATAGAACATTTAATAACCAAGAGTAGGACTTAATAACAGTTTCTGAAAACTGCAACATTTGAATACTAGAACCTATGAAGAAATACACATTTTT-----
i rheMac3.chr8             C 0 I 5
s macFas5.chr8              58372415 109 + 146850525 TACAAGTCAC-AAGGAATAGAACATTTAATAACCAAGAGTAGGACTTAATAACAGTTTCTGAAAACTGCAACATTTGAATACTAGAACCTATGAAGAAATACACATTTTT-----
i macFas5.chr8             C 0 I 4
s chlSab2.chr8              53293881 109 + 139301422 TACAAACCAC-AAAGAAAAGAACATCTAATAACCAAGAGTAGGACTTAGTAACAGTTTCTGAAAACTGCAACATTTGAATACTAGAACCTATGAAGAAATGCACATTTTT-----
i chlSab2.chr8             C 0 I 29
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e calJac3.chrUn_GL286234       16433   0 +    110629 C
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr8             174691130 6776 + 312544902 T
e taeGut2.chr1A             23692651 539 +  73657157 T
e saiBol1.JH378179           2755068   0 +  10880647 C

a score=21511.000000
s hg38.chr8_KI270814v1_alt     27635 27 +    141812 Ataatttatcttttattttttgtagtt
s panTro4.chr8              54967677 27 + 143986469 Ataatttatcttttattttttgtagtt
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59008887 27 + 153482349 Ataatttatcttttattttttgtagtt
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48096825 27 + 100215132 Ataatttatcttttattttttgtagtt
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8              61698890 25 + 150158102 AAAAtttatttttaactttgttgag--
i rheMac3.chr8             I 5 C 0
s macFas5.chr8              58372528 25 + 146850525 AAAATTTatttttaactttgttgag--
i macFas5.chr8             I 4 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e calJac3.chrUn_GL286234       16433  0 +    110629 C
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr8             174691130 6776 + 312544902 T
e taeGut2.chr1A             23692651 539 +  73657157 T
e saiBol1.JH378179           2755068  0 +  10880647 C
e chlSab2.chr8              53293990 29 + 139301422 I

a score=667664.000000
s hg38.chr8_KI270814v1_alt     27662 434 +    141812 acagggtctccctgt--tgcgcaggctggtcttgaagtattgagcccaagtgatcctcctgtctcagcctcccaaagtgctggtatcacaggc--gagtcactgcatctggccAACACATTGGGTTTTATTTGGGATTTTAAAATAGTTTCAGCTATAAGCTTCAAGATTAAG-TATTCCATT-----ACTGTTTCTTTGaacagtttttcaaatgttatgttgttaaaactttgtaataacctactgaaataaggcactaaaaacctca-tattagaagaagacattgagcctaagagaagcaacttgctgaagaacaaataggtgttggttacagaactcaaactta---ggagatcaggacattttccattacgtcaagctaactctagttaatttcctgagctatactgccctgAATTCATGAGTATTTCACTTTGCTTTCTTC
s panTro4.chr8              54967704 435 + 143986469 a-agggtctccctgtgttgcccaggctggtcttgaagtattgagcccaagtgatcctcctgtctcagcctcccaaagtgctggtatcacaggc--gagtcacggcatctggccAACACATTGGGTTTTATTTGGGATTTTAAAATAGTTTCAGCTATAAGCTTCAAGATTAAG-TATTCCATT-----ACTATTTCTTTGagcagtttttcaaatgttacgttgttaaaactttgtaataacctactgaaataaggcactaaaaccctca-ttttagaagaagacattgagcctaagagaagcaacttgttgaagaacaaataggtgttggttacagaactcaaactta---ggAGATCAGGACATTTTCCATTATGTCAAGCTAACTCTAGTTAATTTCCTGAGCTATACTGCCCTGAATTCATGAGTATTTCACTTTACTTTCTTC
i panTro4.chr8             C 0 I 3
s ponAbe2.chr8              59008914 436 + 153482349 acagggtctccctgtgttgcccaggctggtcttgaattattgagcccaagtgatcctcctgtctcagcctcccaaagtactggtatcacaggc--gagtcactgcacctggcCAACACATTGTGTTTTATTTGGGATTTTAAAATAGTTTCAGCTATAAGGTTCAAGAGTAAG-TATTCCATT-----ACTATTTCTTtgagcagtttttcaaatgttacgttgttaaaactttgtaataacctgctgaaataaggcactaaaaccctca-ttttagaagaagacattgagcctaagagaagcaacttgttgaagaacaaacaagtgttggttacagaactcgaactta---TGAGATCAGGACATTTTCCATTATGTCAAGCTAACTCTAGTTAATTTCCTGAGCTATACTGCCCTGAATTCATGAGTATTTCACTTTACTTTCTTC
i ponAbe2.chr8             C 0 I 3
s nomLeu3.chr16             48096852 436 + 100215132 acagggtctccctgtgttgcctaggctggtcttgaagtattgagcacaagtgatcctcctgtctcagcctcccaaagtgctggtatcacaggc--gagtcactgcacctggccAACACATTGGGTTTTATTTGGGATTTTAAAATAGTTTCAGCTATAAGGTTCAAGATTAAG-TATTCCATT-----ACTATTTCTTTGAACAGgttttcaaatgttacattgttaaaactttgtaatatccttctgaaataaggcactaaaaccctca-ttttagaagaagacattgagcctaagagaagcgacttgttgaagaacaaataggtgttggttacagaacaggaactta---cgagatcaggacattttccattatgtcaagctaactctagttaatttcctgagctatactgccctgAATTCATGGGTATTTCACTTTACTTTCTTC
i nomLeu3.chr16            C 0 I 3
s rheMac3.chr8              61698915 442 + 150158102 ataggatctccctatgttgcccaggctggtcttgaactcctgggctcaagcaatcctcttgtctcagcctcccaaagtgctggcatcacaggcatgagccactgcatctgacAAACACGTTGGGTTTTATTTGGGATTTTAAAATAGTTTCAGCAGTAAGTTTCAAGAATAAATTATTCCATTGCTTCACTACTTCTctgagcattttttcaaatgctatcttgttaagtctttataataccctagttaaataaggcactacaagtctcactcttagaggaagacattgagcctaagagaagcaacttgatcaagaaccaa------ttggttgcagagctaagattTATTCTGAGTTGAGAACATTTTCCGTAATGTCAACCTAAATCTAGTTCATTTACTGAGCTATATTGCCCTCAATTCATGAATATTTCACCTTACTTTCTTC
i rheMac3.chr8             C 0 T 55075
s macFas5.chr8              58372553 442 + 146850525 ataggatctccctatgttgcccaggctggtcttgaactcctgggctcaagcaatcctcttgtctcagcctcccaaagtgctggcatcacaggcatgagccactgcatctgacAAACACGTTGGGTTTTATTTGGGATTTTAAAATAGTTTCAGCAGTAAGTTTCAAGAATAAATTATTCCGTTGCTTCACTACTTCTctgagcattttttcaaatgctatcttgttaagtctttataataccctagttaaataaggcactacaagtctcactcttagaggaagacattgagcctaagagaagcaacttgatcaagaaccaa------ttggttgcagagctaagattTATTCTGAGTTGAGAACATTTTCCGTAATGTCAACCTAAATCTAGTTCATTTACTGAGCTATATTGCCCTCAATTCATGAATATTTCACCTTACTTTCTTC
i macFas5.chr8             C 0 I 3
s chlSab2.chr8              53294019 442 + 139301422 ataggatctccctatgttgcccaggcttgtcttgaactcctgggctcaagtagtcctcctgtctcagcctcccaaagtgctggcatcacaggcatgagccactgcatctgacGAACACGTTGGATTTTATTTGAGATTTTAAAATAGTTTCAGCAGTAAGTTTCAAGAATAAATTATTCCATTGCTTCACTACTTCTctgagcattttttcaaatgctgtcttgttaagtctttataataacctagttaaataaggcactatacatctcacttttagaggaagacattgagcctaagagaagcaacttgatcaagaaccaa------ttggttgcagagctaagattTATTCTGAGTTGAGAACATTTTCCATAATGCCAACCTAACTCTAATTCATTTACTGAGCTATATTGCCCTCAATTCATGAGTACTTCACCTTACTTTCTTC
i chlSab2.chr8             I 29 I 99
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e calJac3.chrUn_GL286234       16433   0 +    110629 C
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr8             174691130 6776 + 312544902 T
e taeGut2.chr1A             23692651 539 +  73657157 T
e saiBol1.JH378179           2755068   0 +  10880647 C

a score=65605.000000
s hg38.chr8_KI270814v1_alt     28096 96 +    141812 AATTTGAAGCTTAATAAGTGCATAGAGCTAATAAGTTAGAAGTCTGTGGAATAAGTAGATTTCAGATATTA-CCCCGACAC--TCTGAAATACCCTAGG
s panTro4.chr8              54968142 96 + 143986469 AATTTGAAGCTTAATAAGTGCATAGAGCTAATAAGTTAGAAGTCTGTGGAATAAGTAGATTTCAGATATTA-CCCCGACAC--TCTGAAATACCCTAGG
i panTro4.chr8             I 3 C 0
s ponAbe2.chr8              59009353 98 + 153482349 AATTTGAAGCTTAATAAGTGCATAGAGCTAATAAATTAGAAGTCTGTGGAATAAGTAGATTTCAGATATTA-CCCTGACACTGTCTGAAATACCCTAGG
i ponAbe2.chr8             I 3 C 0
s nomLeu3.chr16             48097291 98 + 100215132 AATTTGAAGCTTAATAAGCGCATAGAGCTAATAAATTAGAAGTCCTTGGAATAAGTAGATTTCTGATATTA-CCCTGACACTGTCTGAAATACCCTAGG
i nomLeu3.chr16            I 3 C 0
s macFas5.chr8              58372998 99 + 146850525 AACTAAAAGTTTAAGAAGTTCATAGAGCTCACAAATTCAAAGATTATGAAATGAGTAAAGTTCTGAGATTAGCTCTAATATTGTCTGGAATACTCTAAT
i macFas5.chr8             I 3 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e calJac3.chrUn_GL286234       16433  0 +    110629 C
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr8             174691130 6776 + 312544902 T
e taeGut2.chr1A             23692651 539 +  73657157 T
e rheMac3.chr8              61699357 55075 + 150158102 T
e saiBol1.JH378179           2755068  0 +  10880647 C
e chlSab2.chr8              53294461 99 + 139301422 I

a score=88053.000000
s hg38.chr8_KI270814v1_alt     28192 79 +    141812 AATTTAACACATTGGGTAAA-TTTTTAATATCAGTGTTGAAATAATACCTCAATTTATCACATATTTGATACATAGCATT
s panTro4.chr8              54968238 79 + 143986469 AATTTAACACATTGGGTAAA-TTTTTAATATCAGTGTTGAAATAATACCTCAATTTATTACATATTTGATACATAGCATT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59009451 79 + 153482349 AATTTAACACATTGGGTAAA-TTTTTAATATCAGTGTTGAAATAATGCTTCAATTTATTACATATTTGATACATAGCATT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48097389 79 + 100215132 AATTTAACACAGTGGGTAAA-TTTTTAATATCAGTGTTGAAATAATACTTCGATTTATTACATATTTAATACATAGCATT
i nomLeu3.chr16            C 0 C 0
s macFas5.chr8              58373097 80 + 146850525 AATTTAACATATTTGGTAAATTTTTTCATATCAGTGTTAAAATAGTACTTTTATTGATTGCATATTTCATATATAGCATT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8              53294560 79 + 139301422 AATTTAACATATTTGGTAAA-TTTTTCATAGCAGTGTTAAAATAGTACTTGTATTGATTGCATATTTCATACATAGCATT
i chlSab2.chr8             I 99 I 2910
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e calJac3.chrUn_GL286234       16433  0 +    110629 C
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr8             174691130 6776 + 312544902 T
e taeGut2.chr1A             23692651 539 +  73657157 T
e rheMac3.chr8              61699357 55075 + 150158102 T
e saiBol1.JH378179           2755068  0 +  10880647 C

a score=183405.000000
s hg38.chr8_KI270814v1_alt     28271 268 +    141812 TACCAAGAATGTTTGGAATCTGAAATAAAGATACCTAAAAGTCCTCAAAACAGCAATCCAGGTAAGACTTTTAATACTAAGCTACTCTTGGTGGTGCTAGCATAAGATTATTG-AGTTTCGATCACAAAAAAGAAATT--TAgtgtgtcaatggtatgtctgtgtggctgtgcatgtgtgtgtaaatatgtttgtatttatatAA---AATTTTTTCTTTGAATAGTTTAGTATTCAC----AGTTAAGAATTTAGTTTGTAGATAGTTTATAATCTC
s panTro4.chr8              54968317 268 + 143986469 TACCAAGAATGTTTGGAATCTGAAAAAAAGATACATAAAAGTCCTCAAAACAGCAATCCAGGTAAGACTTTTAATACTAAGCTACTCTTGGTGGTGCTAGCATAAGATTATTG-AGTTTCGATCACAAAAAAGAAATT--TAGTGTGTCAATGGTATGTCTGTGTGGCTGTGCATGTGTGTGTAAATATGTTTGTATTTATATAA---AATTTTTTCTTTGAATAGTTTAGTATTCAC----AGTTAAGAATTTAGTTTGTAGATAGTTTATAATCTC
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59009530 267 + 153482349 TACCAAGAATGTTTGGAATCTGAAATAAAGATACCTAAAAGTCCTCAAAACAGCAATCCAGGTAAGACTTTTAATACTAAGCTACTCTTGGTGGTGCTAGCATAAGATTATTG-AGTTTCGATCACAGAAAAGAAATT--TAGTGTGTCAGTGgtatgtctgtgtggctgtgcatgtgtatgtaaatatgtttgtatttatataA---AATTTTTTCTTTGAATAGTTTAGTATTCAT----AGTTAAGAATTTAG-TAGTAAATAGTTTATAATCTC
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48097468 267 + 100215132 TACCAAGAATGTTTGGAATCTGAAATAAAGATACCTAAAAGTCCTCAAAACAGCAATCCAGGTAAGACTTTTAATACTAAACTACTCTTGGTGGTGCTAGCATAAGATTATGG-AGTTTCGATCACAAAAAAGAAATT--TAgtgtgtcagtggtatgtctgtgtggctgtgcatgtgtgtgtAAATATGTTTGTATTTATATAA---AATTTTTTCTTTGAATAGTTTAGTATTCAC----AGTTAAGAATTTAG-TTGTAGATAGTTTATAATCTC
i nomLeu3.chr16            C 0 C 0
s macFas5.chr8              58373177 264 + 146850525 CACCAACAACTTTTGGAATATAAAAT----ATGTCTAAAAATCCTCAAAATTTCAACCCAGGTAAGACTTCTGACAGTAAACTACTCTTTGTGACACTACCATAAGATTATGGAAGATTTAATCACAAAAGAGCAATTAAAAATGTATAAATAACTTGTGTGTGTG--tatatatttaaatatagatatatataaatTTCTTTGATTTAATTTTTT-------TAGTTTACAATTCACAATTAGTTAACAATGTTG-TTGTAGATAGTTTGTAATCTC
i macFas5.chr8             C 0 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e calJac3.chrUn_GL286234       16433   0 +    110629 C
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr8             174691130 6776 + 312544902 T
e taeGut2.chr1A             23692651 539 +  73657157 T
e rheMac3.chr8              61699357 55075 + 150158102 T
e saiBol1.JH378179           2755068   0 +  10880647 C
e chlSab2.chr8              53294639 2910 + 139301422 I

a score=59081.000000
s hg38.chr8_KI270814v1_alt         28539 82 +    141812 AAAACCTATTGTCTTAAAAACAATCCTTTATTGAATTTTGTTGCCTACAATTTTAAAAAATATTTTTGAATAAATAACAA----TT
s panTro4.chr8                  54968585 82 + 143986469 AAAACCTATTGTCTTAAAAACAATCCTTTATTGAATTTTGTTGCCTACaattttaaaaaatatttttgaataaataacaa----tt
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59009797 82 + 153482349 AAAACCTATTGTCTTAAAAACAATCCTTTATTGAATTTTGTTGCCTACaattttaaaaaatatttttgaataaataacaa----tt
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48097735 83 + 100215132 AAAACCTATTGTCTTAAAAACAATCCTTTATTGAATTTTGTTGCCTACAATTTTAAAAAATATTTTTGAATAAATAACAA---TTT
i nomLeu3.chr16                C 0 C 0
s macFas5.chr8                  58373441 80 + 146850525 AAGCAGTATTGTCTGAAAAAAAA------ATTTAATTATGGTCCCTAAAATTCCATATAGTATTTTTGTATAAATAATAAAAAATT
i macFas5.chr8                 C 0 C 0
s sarHar1.chr5_GL864568_random      9604 82 +     10761 AATATATGTGGGCATATTAACCATTGTTTATTGGTGATTACTATTTGCAGTTTTCTATATTGATTTTGAATTAGTTAAGA----TT
i sarHar1.chr5_GL864568_random N 0 N 0
e ornAna1.Ultra479               3871811 995 -   6008416 T
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.KE026486                  3582 666 -     24340 T
e astMex1.KB882082               3904961 703 -   8876373 T
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chr1A                 24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195           44418 8752 +     59083 T
e pseHum1.KB221193               9789397 565 +  32995986 T
e zonAlb1.KB913045              12582078 625 +  16390125 T
e colLiv1.KB375358               1019695 647 +   1462937 T
e allMis1.JH737798                 79979 829 +    106177 T
e falPer1.KB391107               2216113 646 -   3101084 T
e falChe1.KB398074               4263496 646 -   7151304 T
e macEug2.GL108065                 83888 651 -    187545 T
e galGal4.chr1                  24067632 655 + 195276750 T
e geoFor1.JH739914               5157808 631 -   7168866 T
e melGal1.chr1                  24929366 674 + 204065131 T
e anaPla1.KB743807                  6030 614 +     81650 T
e amaVit1.KB277496                  7479 640 -     10329 T
e apaSpi1.KB929668               5961518 314 -  12308914 T
e cheMyd1.KB478633               2433661 653 +   6037886 T
e chrPic2.chr2                  18523590 672 -  68452538 T
e pelSin1.JH208680               8419308 1978 -  16024077 T
e calJac3.chrUn_GL286234           16433  0 +    110629 C
e melUnd1.JH556589               7668572 10921 -   7952740 I
e monDom5.chr8                 174691130 6776 + 312544902 T
e taeGut2.chr1A                 23692651 539 +  73657157 T
e rheMac3.chr8                  61699357 55075 + 150158102 T
e saiBol1.JH378179               2755068  0 +  10880647 C
e chlSab2.chr8                  53294639 2910 + 139301422 I

a score=23402.000000
s hg38.chr8_KI270814v1_alt     28621 35 +    141812 TAAGTAAGTGAGTTATATTTTTCCTTTACTGGCAT
s panTro4.chr8              54968667 35 + 143986469 taaGTAAGTGAGTTATATTTTTCCTTTACTGGCAT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59009879 35 + 153482349 taaGTAAGTGAGTTGTATTTTTCCTCTACAGGCAT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48097818 35 + 100215132 TAAGTAAGTGAGTTATATTTTTCTTCTACAGGCAT
i nomLeu3.chr16            C 0 C 0
s macFas5.chr8              58373521 35 + 146850525 TAAGTTCTTATGTTGTATGTTTCCTCTATAGTCAT
i macFas5.chr8             C 0 T 55971
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e calJac3.chrUn_GL286234       16433  0 +    110629 C
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr8             174691130 6776 + 312544902 T
e taeGut2.chr1A             23692651 539 +  73657157 T
e rheMac3.chr8              61699357 55075 + 150158102 T
e saiBol1.JH378179           2755068  0 +  10880647 C
e chlSab2.chr8              53294639 2910 + 139301422 I

a score=42890.000000
s hg38.chr8_KI270814v1_alt     28656 82 +    141812 GTTCTAACGAATGAGGTTTGTGAATACGTGATGATTCCTATGATGAGCTTAGAATGATTATTTCTACTTTTGGATCTGGGGA
s panTro4.chr8              54968702 82 + 143986469 GTTATAACGAATGAGGTTTGTGAATACATGATGATTCCTATGATGAGCTTAGAATGATTATTTCTACTTTTGGATCTGGGGA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59009914 82 + 153482349 GTTATAATGAATGAGGTTTGTGAATACATGATGATTCCTGTGATGAGCTTAGAATGATTATTTCTACTTTTGGATCTGGGGA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48097853 82 + 100215132 GTTATAATGAATGAGGTTTGTGAATACATTATAATTCCTGTGATGAGCTTAGAATGATTATTTCTACTTTCGGATCTGGGGA
i nomLeu3.chr16            C 0 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e calJac3.chrUn_GL286234       16433  0 +    110629 C
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr8             174691130 6776 + 312544902 T
e taeGut2.chr1A             23692651 539 +  73657157 T
e rheMac3.chr8              61699357 55075 + 150158102 T
e macFas5.chr8              58373556 55971 + 146850525 T
e saiBol1.JH378179           2755068  0 +  10880647 C
e chlSab2.chr8              53294639 2910 + 139301422 I

a score=18566.000000
s hg38.chr8_KI270814v1_alt     28738 23 +    141812 AATGATAAAGATCCAAATAAAAT
s panTro4.chr8              54968784 23 + 143986469 AATGATAAAGATCCAAATAAAAT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59009996 23 + 153482349 AATGATAAAGACCCAAATAAAAT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48097935 23 + 100215132 AATGATAAAGATCCAAATAAAAT
i nomLeu3.chr16            C 0 C 0
s chlSab2.chr8              53297549 23 + 139301422 AATGATAAATATTCAAATAAATT
i chlSab2.chr8             I 2910 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e calJac3.chrUn_GL286234       16433  0 +    110629 C
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr8             174691130 6776 + 312544902 T
e taeGut2.chr1A             23692651 539 +  73657157 T
e rheMac3.chr8              61699357 55075 + 150158102 T
e macFas5.chr8              58373556 55971 + 146850525 T
e saiBol1.JH378179           2755068  0 +  10880647 C

a score=32406.000000
s hg38.chr8_KI270814v1_alt     28761 26 +    141812 TGTGTTTCTCCAGTGAGAAGAAACAA
s panTro4.chr8              54968807 26 + 143986469 TGTGTTTCTCCAGTGAGAAGAAACAA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59010019 26 + 153482349 TGTGTTTCTCCAGTGAGAAGAAACAA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48097958 26 + 100215132 TGTGTTTCTCCAGTGAGAAGAAACAA
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8              61644282 26 + 150158102 TGTGTTTCTCCAGTGAGGAAGAAGAA
i rheMac3.chr8             T 55075 C 0
s chlSab2.chr8              53297572 26 + 139301422 TGTGTTTCTCCAGTGAGAAAGAAGAA
i chlSab2.chr8             C 0 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e calJac3.chrUn_GL286234       16433  0 +    110629 C
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr8             174691130 6776 + 312544902 T
e taeGut2.chr1A             23692651 539 +  73657157 T
e macFas5.chr8              58373556 55971 + 146850525 T
e saiBol1.JH378179           2755068  0 +  10880647 C

a score=261729.000000
s hg38.chr8_KI270814v1_alt     28787 148 +    141812 TG----GCTGTGGATAGGGAGCCAACCAGGTTTCCTGCAGAGATTCATGGGAAGCTTTTGAGCAGGGGAGTCAGAAGATGAGCAGTCAGTATTAGGGCATTCTGGTCATGGCACGATGcagggattggctagctcttcctgtaaagggccag
s panTro4.chr8              54968833 148 + 143986469 TG----GCCATGGATAGGGAGCCAACCAGGTTTCCTGCAGAGATTCATGGGAAGCTTTTGAGCAGGGGAGTCAGAAGATGAGCAGTCAGTATTAGGGCATTCTGGTCATGGCACGATGcagggattggctagctcttcctgtaaagggccag
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59010045 148 + 153482349 TG----GCCGTGGATAGGGAGCCAGCCAGGTTTCCTGCAGAGATTCATGGGAAGCTTTTGAGCAGGGGAGTCAGAAGATGAGCAGTCAGTATTAGGGCATTTTCGTCATGGCATGACGcagggattggctagctcttcctgtaaagggccag
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48097984 148 + 100215132 TG----GCCGTGGATAGGGAGCCAGCCAGGTTTCCTGCAGAGATTCATGGGAAGCTTTTGAGCAGGAGAGTCAGAAGATGAGCAGTCAATATTAGGGCATTCTGGTCATGGCACGATAcagggattggctagctattcctgtaaagggccag
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8              61644308 148 + 150158102 AG----GCTGTGGATAGGGAGCCAGCCAGGTTTCCTGTGGAGATTCACAGGAAGCTTTTAAGCAGGGGAGTCAGAAGATGAGCAGTGAGTATTAGGGCATTCCAGTCACGGCGTGATGCAGGGATTGTCCTGCTCTTCCTGTAAAGGGCCAG
i rheMac3.chr8             C 0 C 0
s chlSab2.chr8              53297598 152 + 139301422 AGAATAGTCATGGATAGGGAGCCAGTGAGGTTTTCCACAGGGATTCATGGGAAGATTTTGGGCAGGGGAGTCACAAGAGGAGGTGTGAGTATTAGGGCATTCTGGTTACGATATAAAGTagggattggcaggcttttcctgtaaagggccag
i chlSab2.chr8             C 0 T 54302
s calJac3.chrUn_GL286234       16433 117 +    110629 TG----GCTATGGATAGGGAACCAGTCAGGTCTCCTGCAGGGAT-----------------GCAGGAGAG--------------GTGAGTAGCAGGGTGTTCTGGTTACCGCGTGAAGcagagattgagcagcttttcctgtaaagggccag
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179           2755068 134 +  10880647 TG----GCCACGGATAGGGAGCCAGTCAGGTTTCCTGCAAAGATTCACGGGAAGTGTTTCAGCAGGAGAG--------------TTGAGTAGCAGGGTGTTCTGGTCACAGCGTGAAGcagggattgggcagcttttcctgtaaagggccat
i saiBol1.JH378179         C 0 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr8             174691130 6776 + 312544902 T
e taeGut2.chr1A             23692651 539 +  73657157 T
e macFas5.chr8              58373556 55971 + 146850525 T

a score=138216.000000
s hg38.chr8_KI270814v1_alt     28935 82 +    141812 gtggaaaacactCATAGGTATCATGGTCTCCGTT-------------CACGCCGTAGCAGCGTGAAAGCAGTCAGAGATGACACGTAAGCAAATA
s panTro4.chr8              54968981 82 + 143986469 gtggaaaacactCATAGGTATCATGGTCGCCGTT-------------CATGCTGTAGCAGCGTGAAAGCAGTCAGAGATGACACGTAAGCAAATA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59010193 95 + 153482349 gtggaaaacgcttataggtatcatggtcgcccttgtgtctgctgaagcctgccgtagcagcgtgaaagcagtcagagatgacacgtaagcaaatA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48098132 95 + 100215132 gtggaaaatgctcataggtatcgtggtcgtcattgtgtctgctgaagcctgccatagcagcatgaaagcagtcagagatgacacataagcaaata
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8              61644456 95 + 150158102 GTGGGAAACACTCGTAGGCCCCGTGGTGGCTGTCATGTCTGCTGAGGCTTCCCGTAGTAGCGTGGAAGCTGTCAGAGATGACGCTTAAGCAAATG
i rheMac3.chr8             C 0 C 0
s chlSab2.chr8              53243448 95 + 139301422 gtgggaaacactcataggccccgtggtggctgtcatgtctgctgaagcctcccgtagtagcgtggaagcagtcagagatgacgcttaagcaaatg
i chlSab2.chr8             T 54302 C 0
s calJac3.chrUn_GL286234       16550 95 +    110629 gtgagaggcacctgtaggccccatggtctccgtcgtgtctgctcaaggctgctgtctcagtatgcaggctggcagagatgatgtgtgagcaaaGA
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179           2755202 94 +  10880647 gcgagaggcacctgtggg-cccgtggtctctgtcacgtctgctcaaggctgccatcgcagcatgcaggcaggcagagatgatgcctgagcaaaga
i saiBol1.JH378179         C 0 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr8             174691130 6776 + 312544902 T
e taeGut2.chr1A             23692651 539 +  73657157 T
e macFas5.chr8              58373556 55971 + 146850525 T

a score=1261345.000000
s hg38.chr8_KI270814v1_alt     29017 551 +    141812 CTCCCGACCGGCCTCTGGTAAAGCGTCCGTTGTGGAAGTGTTTAACAGACCTAACAACCTTTCAAACCGCATGGCATTTGTTTCCCGGGTCCCCTTTTGAGAATGTTTCTGGCAGCTTACAAGGACCTTCTCCAACGTGCTTGGGctctcttgactttcctaggatcctgaatacagcgtccccaat------------------------ttggccttagggctccgggaagcattggccttactgtgtccccgctaaccccattcccatcttgtcatgatcacccactggagaagagaggaggtgctggagtgaatgggat----cgggggaggcctgttcatccctgggagcccggaatgaaccggtgttaccatgtacccctggccttgcctacatccctgctctaa----tggtcatgtgttagcctgggat---cagcctttgtctcggtgctatggatctgttgcgcctgcggccttggtccggtctctgtccttgtgtctgtgacatgagagtgactgtggctgagagcattccagcaagacaatgatgatctctgctgtctgattcctgtttcctag
s panTro4.chr8              54969063 551 + 143986469 CTCCCGACCGGCCTCTGGTAAAGCGTCCATTGTGGAAGCGTTTAACAGACCTAACAACCTTTCAAACCGCATGGCATTTGTTTCCCGGGTCCCCTTTTGAGAATGTTTCTGGCAGCTTACAAGGACCTTCTCCAACGTGCTTGGGctctcttaactttcctaggatcctgaatacggcgtccccaat------------------------ttggccttagggctccgggaagtattggccttactgtgtccccgctaaccccgttcccatcttgtcatgatcacccactggagaagagaggaggtgctggagtgaatgggat----cgggggaggcctgttcatccctgggagcccggaatgaaccggtgttaccgtgtacccctggccttgcctacatccctgctctaa----cggtcgtgtgttagcctgggat---cagcctttgtctcggtgctatggatctgttgcgcctgcggccttggtccggtctctgtccttgtgtccgtgacatgagagtgactgtggctgagagcattccagcaagacagtgatgatctccgctgtctgattcctgtttcctag
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59010288 546 + 153482349 CTCCCGACCGGCCTCTGGTAAAGCGTCCATTCTGGCagcatttaacagacctaacaacctttcaaaccgcatggcatttctttcccgggtcccctttcgagaaggtttctggcggcttacaaggaccttctccagtgtgcttggactctcttaactttcctaggatcctgaatatggcgtccccaat------------------------ttggccttagggcc-----aagtattggccttactgtgtccccgctaaccccggtcccatcttgtcatgatcacccactggagaagagaggaggtgctggagtgaatgggat----ccggggaggcccgttcatccctgggagcccagaatgaaccggtattactgtgtacccctggctttgcctacatccctgctctaa----tggtcgtgtgttagcctgggat---cagcctttgtcttggtgctatggatctgttgtgcctgcggccttggtccagtctctgtccttatctccatgacgtgagagtgactgtggctgagagcattccagcaagacaatgatgatctccgctgtctgattcctgtttcctag
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48098227 564 + 100215132 gtcctgactgGCCTCTGGTAAAGTGTCCATTCTggaagcatttaacagactt---aacctttcaaactgcatgacatttctttctcgggtcccctttggagaatgtttctggtggcttacaaggaccatctccaacgtgcttggatc-------ctttcctaggatcctgaatatGGCATCCCCAATTTGGCCTTAGATCTCCGGGAAGTATTGGccttagggctccgggaagtattggccttactgtgtccccactaaccctggtcccatcttgtcatgatcactcactggagaagagaggaggtgctggagtgaatggggt----caggggaggcccgttcatccctgggagcccggaatgaaccggtgttaccgtgtacccc-agccttgcctacatccttgctctaa----cggtcgtgtgttagcctgggat---cagcctttgtctcagtgctatagatctgttgcacctgcggccttggtctggtctctgtctttgtctctgtgacatgagagtgactgtggctgagagcattccagcaagacaatgatgatctccactgtctgattcctgtttcctag
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8              61644551 548 + 150158102 GTCCTGACTGGCCTCTGGTAAAGCGTCAATTCTGGAAGGATTTAACAGACCTAACAACCTTTCAAGCTGCATGGCGTTTCTTTCCCATCTCCCGTTTTGGAAATGTTTCTGGCGGCTTACAAGGACTATCTCCAACGTGCTTGGTCTCTCTTAACTTTCCCAGGAtcctgaatcgggcatccactgt------------------------tcatccttactgctctgggatgtctcggtcttaccatgtccctgccaatcctggtcccatctcatcacgatcacccact---gaagagaggaggtgctggagtgaacgtggt----tgggggagccccgttcatccccagggtcccagaatgaaccagtgttactgtgtacccctgatcttgccttcctccctgctctaa----cagccgtgtattagcctgggat---cagctttggtcccagtgctattggtctgttgcgcctgcagccttggtccagcctctgtctttgtctccgtgacgtgagagtgactgtggctgagagcattccagcaagacaatgatgatctctgctgtctgattcccacttcccag
i rheMac3.chr8             C 0 C 0
s macFas5.chr8              58317585 548 + 146850525 gtcctgactggcctctggtaaagcgtcagttctggaAGGATTTAACAGACCTAACAACCTTTCAAGCTGCATGGCGTTTCTTTCCCATCTCCCGTTTTGGAAATGTTTCTGGCGGCTTACAAGGACTATCTCCAACGTGCTTGGTCTCTCTTAACTTTCCCAGGAtcctgaatcgggcatccactgt------------------------tcatccttactgctctgggatgtctcggtcttaccatgtccctgccaatcctggtcccatctcatcacgatcacccact---gaagagaggaggtgctggagtgaacgtggt----tgggggagccccgttcatccccagggtcccagaatgaaccagtgttactgtgtacccctggtcttgccttcctccctgctctaa----cagccgtgtattagcctgggat---cagctttggtcccagtgctattggtctgttgcgcctgcagccttggtccagcctctgtctttgtctccgtgacgtgagagtgactgtggctgagagcattccagcaagacaatgatgatctctgctgtctgattcccacttcccag
i macFas5.chr8             T 55971 C 0
s chlSab2.chr8              53243543 548 + 139301422 gtcctggctggcctctggtaaagcgtcaattctggaAGGATTTAACAGACCTAACAACCTTTCAAACTGCATGGCGTTTCTTTCCCATCTCCCGTTTTGGAAATGTTTCTGGCGGCTTACAAGGACTATCTCCAACGTGCTTGGTCTCTCTTAAGTTTCCCAGGAtcctgaatcgggcatccactgt------------------------tcgtccttactgctctgggatgtctcggtcttaccatgtccctgccaaccctggtcccatctcatcacgatcacccact---gaagagaggaggtgctggagtgaacgtggt----tgggggagccccgttcatccccagggtcccagaatgaaccagtgttactgtgtacccctggtcttgccttcctccctgctctaa----cagccgtgtattagcctgggat---cagctttggtcccagtgctattggtctgttgcacctgcagccttggtccagcttctgtctttgtctccgtgacgtgagagtgactgtggctgagagcattccagcaagacaatgatgatctctgctgtctgattcccacttcccag
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       16645 557 +    110629 GTCCTGACCGGACTCCGGGAAAGCATCGATTCCGGAAGCGTGT---AGACCTCACAGCCTTTGAAACGATATGGCGATTCTTTCCTGGGTCCCCTTTCAAGAATCTTTCTGGCGACTTATGCAGATCATCTCCAATGTGCTTGGGCTCTGTCGGGATTCCTGGGACcctg-atagggcatcc-ctgt------------------------ttgtcttctgggcttcaggatgtactggtcttaccatgttcccactgaccccagacccatcttgtcacgactgcccagtggggaggagaggaggtgctggcatgaacagggctggacgggggtgccccactcatctctgtgcccctgcaatgaagcggcattactgtgtagccctcgcctagccttcatctctgttctaagcttaggtcctgtgttatcctgggaggaccaacctgcagctctgatctgtgggtctcttgcacctgcagcctcggttcagcctcagtccttgtctccgtgaccttgaagtgactctggctcacagtgttccaggaagaaaatgatgatctccactgttggactcccactttccag
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179           2755296 539 +  10880647 gtcctgactggactccgggaaagcatcaattccagaagcaTGT---AGAACTCACAGCCTTTGCAACCGTATGGCGATTCTTTCCTGGGTCCCCTTTCAAGAATCTTTCTGGCGACTTATGCAGATCATCTCCAGTGTGCTTGGGCTCTATCGAGATCCCTGGGAttctg-atagggcgtcc-ctgt------------------------ttgtcttctgggctctgggatgtactggtcttaccatgtcc-------tcccagacccatcttgtcatgaccgcccagtggggaggagaggaagggc-----------aggcttgacaggggtgccccactcatccccgcacccctgcaatgaagtggcattactgtgtagccctcgcctagccttcatctctgttctaagcttaggtcctgtattatcctgggatgaccaccctgcatctctgtcctgtgggtctcttgcacctgcagcctcggttcagcctcagtccttgtcttcgtgaccttgaagtgactctggctcagagtgttccagcaagaaaatgatgatctccagtgttgcactcccgctttccaG
i saiBol1.JH378179         C 0 M 365
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr8             174691130 6776 + 312544902 T
e taeGut2.chr1A             23692651 539 +  73657157 T

a score=276681.000000
s hg38.chr8_KI270814v1_alt     29568 128 +    141812 attctcacactagacgaggagcctgtttttcagctagctgctgcaagggagctggaaatttctcccttcagataggacctagaaggtctgaaagcatct------ggagaagggtgcggctgggagtagagaaa
s panTro4.chr8              54969614 128 + 143986469 attttcacactagatgaggagcctgtttttcagctagctgctgcaagggagctggaaatttctcccttcagataggacctagaaggtctgaaagcatct------ggagaagggcgcggctgggagtagagaaa
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59010834 125 + 153482349 attctcacactagat---gagcctgtttttcagctagctgctgcaagggggctggaaatttctcccttcagataggacctagaaggcctgaaagcatct------ggagaagggcgtggctgggaatagagaaa
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48098791 128 + 100215132 attctcacactagatgaggagcctgtttttcagctagctgctgcaagggggctggaaatttctcccttcagataggacctagaaggcctggaagcatct------ggagaagggcatggctgtgagtagagaaa
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8              61645099 127 + 150158102 gttctcacgatagatgaggagcctgtttttcagctagctgccgcaagggggctggacatttcacccttcagataggacctggaaggcctggaaacatct------ggagaagggtgtg-ctgtgagtagagaaa
i rheMac3.chr8             C 0 I 79
s macFas5.chr8              58318133 128 + 146850525 gttctcacgatagatgaggagcctgtttttcagctagctgccgcaagggggctggacatttcacccttcagataggacctggaaggcctggaaacatct------ggagaagggtgtgactgtgagtagagaaa
i macFas5.chr8             C 0 C 0
s chlSab2.chr8              53244091 128 + 139301422 gttctcacaatagatgaggagcctgtttttcagccagctgccgcaagggggctggacatttcacccttcagataggacctggaaggcctggaaacatct------ggagaagggcgtgactgtgagtagagaaa
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       17202 133 +    110629 -ttctcacactagacgaggagcctgtgtttcagctggctgctgcaaggggactggacatccctcccttcagatgggacctgggaggtctggaagcatctggagaaggagaagggtgtggaaacaactagagtaa
i calJac3.chrUn_GL286234   C 0 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr8             174691130 6776 + 312544902 T
e taeGut2.chr1A             23692651 539 +  73657157 T
e saiBol1.JH378179           2755835 365 +  10880647 M

a score=90987.000000
s hg38.chr8_KI270814v1_alt     29696 78 +    141812 cagg---ctacagactgaagcaggaggaagcgagagaggaagactcatggaaagccttgttgcgctcgccaaaagagctgc-
s panTro4.chr8              54969742 78 + 143986469 cagg---ctacagactgaagcaggaggaagcgagagaggaagactcatggaaagccttgttgcgctcgccaaaagagcggc-
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59010959 78 + 153482349 cagg---ctacagactgaagcaggaggaagcgagagaggaagactcacggaaagccttgttgcgctcgccaaaagagctgc-
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48098919 78 + 100215132 cagg---ctacaggctgaagcaggaggaagcgagagaggaagactcacggaaagccttgttgtgcttgccaaaacagctgc-
i nomLeu3.chr16            C 0 C 0
s macFas5.chr8              58318261 68 + 146850525 -aggaCACTATT----------GGCGGAAGCAAGAGAGGAAGA--CACGGAAAGCCTTGCTGTGCTCTCCAAAAGAGCCGC-
i macFas5.chr8             C 0 I 58561
s chlSab2.chr8              53244219 78 + 139301422 -aggaCACTATTGGCGGAAGCGGGCGGAAGCAAGAGAGGAAGA--CACGGAAAGCCTTGCTGTGCTCTCCAAAAGAGCCGC-
i chlSab2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       17335 74 +    110629 --------cagaggttgtagctggagggaaggagagaggaatacccatggaagcccttcccgtgctcgccaaaagagcaggc
i calJac3.chrUn_GL286234   C 0 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr8             174691130 6776 + 312544902 T
e taeGut2.chr1A             23692651 539 +  73657157 T
e rheMac3.chr8              61645226 79 + 150158102 I
e saiBol1.JH378179           2755835 365 +  10880647 M

a score=6111.000000
s hg38.chr8_KI270814v1_alt     29774 3 +    141812 cct
s panTro4.chr8              54969820 3 + 143986469 cct
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59011037 3 + 153482349 cct
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48098997 3 + 100215132 cct
i nomLeu3.chr16            C 0 C 0
s macFas5.chr8              58376890 3 + 146850525 cct
i macFas5.chr8             I 58561 C 0
s chlSab2.chr8              53244297 3 + 139301422 CCT
i chlSab2.chr8             C 0 I 8
s calJac3.chrUn_GL286234       17409 3 +    110629 cct
i calJac3.chrUn_GL286234   C 0 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr8             174691130 6776 + 312544902 T
e taeGut2.chr1A             23692651 539 +  73657157 T
e rheMac3.chr8              61645226 79 + 150158102 I
e saiBol1.JH378179           2755835 365 +  10880647 M

a score=120772.000000
s hg38.chr8_KI270814v1_alt     29777 125 +    141812 cgcactcgagagggccatgttta-atgcctacctgaagaaaggtagtaacctctggagcacttgtggcttggggtgaaaacgcgc-----ctggcgtgaaggaagaatctttgctcttcccagaggggtgc
s panTro4.chr8              54969823 125 + 143986469 cgcactcgagagggccatgttta-atgcctacctgaagaaaggtagtaacctctggagcacttgtggcttggggtgaaaacgcac-----ctggcgtgaaggaagaatctttgctcttcccagaggggtgc
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59011040 125 + 153482349 cgcactcgagagggccatgttta-atgcctacctgaagaaaggtagtaacctctggagcacttgtggcttggggtgaaaatgcgc-----ctggcgtgaaggaagattctttgctctttgcagaggggtgc
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48099000 125 + 100215132 caccctcgagagggccatgttta-atgcctacctgaagaaaggtagtaacctctggagcacctgtggcttggggtgaaaacatgc-----ctggtgtgaaggaagaatctttgctcttcccagaggggcgc
i nomLeu3.chr16            C 0 C 0
s macFas5.chr8              58376893 125 + 146850525 tgaatttgagagggccatatttatttgccctcttgacataaggtagtaacctccagaggatttgggccttagggtaaaaactccc-----aaaggttagaggaagaat-ttcccccctcccataggggtac
i macFas5.chr8             C 0 C 0
s calJac3.chrUn_GL286234       17412 130 +    110629 cggactcgagagggccatgcgta-atgccttcctgacataaggtagtaacctctggagcacttgtggctgggggtaaaaactcgcccgggctaggatgaaggaagaatctcctctcttggcagaggggcaa
i calJac3.chrUn_GL286234   C 0 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr8             174691130 6776 + 312544902 T
e taeGut2.chr1A             23692651 539 +  73657157 T
e rheMac3.chr8              61645226  79 + 150158102 I
e saiBol1.JH378179           2755835 365 +  10880647 M
e chlSab2.chr8              53244300   8 + 139301422 I

a score=155392.000000
s hg38.chr8_KI270814v1_alt     29902 122 +    141812 tg--actggaaatgagcaagtagatgggg-tcccaaagagccacagaat-gaggccctatgcaggtggtgggacagactgccccaaaagccccctaagaagttggccctggggcgtaagaggaagg
s panTro4.chr8              54969948 122 + 143986469 tg--actggaaatgagcaagtagatgggg-tcccaaagagccacagaac-gaggccctatgcaggtggcgggacagactgccccaaaagcccccTaagaagttggccctggggcgtaagaggaagg
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59011165 122 + 153482349 tg--actggaaatgagcaagtagatggga-tcccaaagggccacagaac-gaggccctatgcaggtggtggggcagactgccccaaaagccccctgagaagttggccctggggcgtaagaggaagc
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48099125 122 + 100215132 tg--actggaaatgagcaagtagatgggg-tcccaaagggccacagaat-gaggccctatgcaggcggcaggacagattgccccaaaagccccctgagaagttggccctggggagtaagaggaaGC
i nomLeu3.chr16            C 0 C 0
s macFas5.chr8              58377018 120 + 146850525 tatttccaaaaaaaagcaagtaggtagggttcttaaaaggccacagaat-gaagctctatgcaggt----gaacaaatggcttcaaaagccactgaagaactgggccct-gagcataacagtaagg
i macFas5.chr8             C 0 T 57539
s calJac3.chrUn_GL286234       17542 124 +    110629 tg--actggaaaggagcaagtcgatggggtactcatagggccacaaaatggaggccctatgcaggcgggtgtacagacggccccaacagctcccggagaaattgtccctggggcataaccggaGGC
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179           2756207 124 +  10880647 tg--actggaaaggagcaagtcggtggggtcctcatagggccacaaaatggaggccctgtgcaggtgtgtgtacagacggccccaacagcccccagagaagttgttcctggggcataaccggaaGC
i saiBol1.JH378179         M 365 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr8             174691130 6776 + 312544902 T
e taeGut2.chr1A             23692651 539 +  73657157 T
e rheMac3.chr8              61645226  79 + 150158102 I
e chlSab2.chr8              53244300   8 + 139301422 I

a score=113041.000000
s hg38.chr8_KI270814v1_alt     30024 104 +    141812 cagggtgaagagcaggagtgaaagctgcttcagcactttggagcaggaaggaaagcaagcaagatacagttggaagagggcgaagcgggcaacctaagggacag
s panTro4.chr8              54970070 104 + 143986469 cagggtgaagagcaggagtgaaagctgcttcaacactttggagcaggaaggaaagcaagcaagatacagttggaagagggcgaagcgggcaacctaagggacag
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59011287 104 + 153482349 cagggtgaagagcaggagtgaaagctgcctcaacactttggagcaggaaggaaagcaagcaagatacagttggaagagggtgaattgggcaacctaagggatgg
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48099247 104 + 100215132 CAGGGTGAagagcaggagtgaaagctgcttcaacactttggagcaggaaggaaagcaagcaagatacagttggaagagggcgaagcaggcaacctaagggatgg
i nomLeu3.chr16            C 0 C 0
s calJac3.chrUn_GL286234       17666  98 +    110629 ------CAGAagcaggagggaaagcttctcaaacactttggagctggaaggaaaagcagcaaaatacagttggaagagggtgaagcgggtgacttgagggatgg
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179           2756331  98 +  10880647 ------CAGAagcaggagggaaagcttctcagacactttggagctggaaggaaaagcagcaaaatacagttggaagagggtgaagtgagtgacttgagggatgg
i saiBol1.JH378179         C 0 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr8             174691130 6776 + 312544902 T
e taeGut2.chr1A             23692651 539 +  73657157 T
e rheMac3.chr8              61645226  79 + 150158102 I
e macFas5.chr8              58377138 57539 + 146850525 T
e chlSab2.chr8              53244300   8 + 139301422 I

a score=187327.000000
s hg38.chr8_KI270814v1_alt     30128 131 +    141812 agtgcagggtttgac-cttcgactt--ggggtctcctccattggtaggttttgggggtggcattgttgcctctccactgatccttcccttgggtggggctgttgactggcatcgcggcctgtcagcttgtgggc
s panTro4.chr8              54970174 131 + 143986469 agtgcagggtttgac-cttcaactt--ggggtctcctccattggcaggttttgggggtggcattgttgcgtctccactgatccttcccttgggtggggctgttgactggcgtcgcggcctgtcagcttgtgggt
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59011391 131 + 153482349 agtgcagggtttgac-cttcgactt--ggggtctcctccattggcaggctttgggggtggcattgttgcctctccaccgatccttcccttgggcggggctgttgactggcaccgtggcctgtcagcctgtgggc
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48099351 131 + 100215132 agtgcagggtttgac-cttcgactt--ggagtctcctccattggcaggctttgggggtggcatcgttgcctctccactgatccttcccttgggcggggctgttgactggcaccgtggcctgtcagcctgtgggC
i nomLeu3.chr16            C 0 I 1890
s macFas5.chr8              58319599 124 + 146850525 agtgcagggtttg--------actc--aaggtgtcatttgttggcaggctttcagggtggtgtttttgcctctcccctgatccttccttcgggtgggtctgtccactggtgccgcagcctgtcagcccatgggt
i macFas5.chr8             T 57539 C 0
s calJac3.chrUn_GL286234       17764 134 +    110629 cgtgcagggtttgactttttgacttcggggatctcctaggttggcaggctggtggggtggcatcattgcttctcccctggtccttcccttgggtggggctgtccactggtgccacggcctgtcagcctgtgggc
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179           2756429 133 +  10880647 cgtgcagggtttgac-ctttgacttcggggatctcctaggttggcaggctggtggggtggcatcgttgcttctcccctggtccttcccttgggtgcggctgtccactggcgccacggcctgtcagtctgtgggt
i saiBol1.JH378179         C 0 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr8             174691130 6776 + 312544902 T
e taeGut2.chr1A             23692651 539 +  73657157 T
e rheMac3.chr8              61645226  79 + 150158102 I
e chlSab2.chr8              53244300   8 + 139301422 I

a score=270389.000000
s hg38.chr8_KI270814v1_alt     30259 380 +    141812 ----ggggggtgtgacagcc----gcaatgccatacctggaggc-----ttaggtgtgctcacttgaggtgtacatcctctacctgtcgagtgttctcagaggaaggagacagagctgctgaaccccgccagtgtggctgtcagggggtcctgtgtgagcccacatgcctgactcctgggatctcagagggaggctgctgatgtccactttcctgcgcttccgtccattgggagcctgcccttccttggcactggctggctgtgagcggttt-tcctccatagatagggttcaa---gaaccacgtgacagtcacctc-------atggtggtctgacattcctgat---ggaggtagggagacccc--ctggtaccatgctcacgtcagaccagctaccGTGAGTGAC
s panTro4.chr8              54970305 376 + 143986469 ----ggggggtgtgacagcc----tcaatgccatacctggaggc-----ttaggtgtgctcacttgaggtgtacatcctctacccgtcgagtgttcccagaggaaggggacagagctgctcaaccccgccagtgtggctgtcagggggtcctgtgtgagcccacatgcctgactcctgggatctt----ggaggctgctgatgtccaccttcctgcgcttccgtccattgggagcctgcccttccttggcactggctggccgtgagcggttt-tcctccatagatagggttcaa---gaaccacgcgacagtcacctc-------atggtcgtctgacattcctgat---ggaggtagggagaaccc--ctggtaccatgctcacgtcagaccagctaccGTGAGTGAC
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59011522 380 + 153482349 ----ggggggtgtgacagcc----acagtgccatacctgcagcc-----ttaggtgtgctcacttgaggtgtacatcctctacccgtcgagtgttctcagaggaaggggacagagctgctcaaccccgccggtgtggctgtcagggggtcctgtgtgagcccacatgcctgactcctgggatcttagggggaggctgctgtcgtccaccttcctgtgcttccgtccattgggagcctgcccttccttggcactggctggccgtgaatggttt-tcctccatagatagggttcaa---gaactgcccgacagttacctc-------atggttgtctgacattcctgat---ggaggtagggagaccgc--ctggtactatgttcacgtcagaccagctacTGTGAGTGAC
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8              58319723 368 + 146850525 ----tttgggtgtcacatga----gcagtgcagttcctagagtc-----ttaggcttgtgccct-----------tttcttacccattgagtgttctcacaggaagggtatggagctgctaaacccaaccgttctggctgtta-ggtgtcctgcatgagcccacgcacatgattcctgggattttaccgggaagctgctgatgtccaccttccagctcttttgtcctttgggaggctgcccttttttggcactggcaggctgcgaacggttt-tcctccaaagaaacgtttcaa---caactgcctgaccatcatcta-------ctggttgtctgacatttctggt---ggtggtgggggaaaccc--ctcataccctgctcatgtcagtccagctacctGGAGTGAC
i macFas5.chr8             C 0 I 55076
s calJac3.chrUn_GL286234       17898 393 +    110629 agggggtgggcataacaggcatgcacagtatggttgccggactcgcacttgaggtgtactcactggaggtgttcttcccttacctgtggagtgtgctcagaggaaggcaacag-gctgcttaagcccaccggcttggctccatagggagcctgcatgagcccacgggcccgactcctgcaatcttattgggaagcttctgacatcacacttcttgcgcttctatc----aggggacggcccc-----------agccagccacaagcattttatcctccataggtactgttcaacaagcgctgcctgaatgtcaccctgtgagtgagggttgtctgacatttgtggtggtggtgggggggagaccccctctcataccctgctagtgtcagaccagctacctaGAGTGAC
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179           2756562 370 +  10880647 ggggggtgggcatcacacgcacgtacagtatgggtgctggagttgcacttgaggcgtactcactggaggtgttcttcccctacgtgtggagtgtgctcagaggaaggcgacagaactgctcaagcctgccggcttcgctccgtcgggggcctgcatgagcccac-ggcccgactcctgccatcttactgggaagcttctgacatcacccttccagcgcttctgtc----gggggatggcccttccttgg----tgccggacacaagcgttttatcctccacaggtactgttcaa------------------cacccc----gtgatggttgtctgacatctgtggt--------gggggggaccccctctcctaccctgctggtgtcagaccagctacctaGAGTGAC
i saiBol1.JH378179         C 0 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr8             174691130 6776 + 312544902 T
e taeGut2.chr1A             23692651 539 +  73657157 T
e nomLeu3.chr16             48099482 1890 + 100215132 I
e rheMac3.chr8              61645226  79 + 150158102 I
e chlSab2.chr8              53244300   8 + 139301422 I

a score=11043.000000
s hg38.chr8_KI270814v1_alt     30639 13 +    141812 AGGAACGTCTGAC
s panTro4.chr8              54970681 13 + 143986469 AGGAACGTCTGAC
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59011902 13 + 153482349 AGGAACGTCTGAC
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8              58375167 13 + 146850525 AGGAACATCTGAC
i macFas5.chr8             I 55076 C 0
s calJac3.chrUn_GL286234       18291 12 +    110629 AGGAACGTCTT-C
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179           2756932 12 +  10880647 AGGAACACCTT-C
i saiBol1.JH378179         C 0 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr8             174691130 6776 + 312544902 T
e taeGut2.chr1A             23692651 539 +  73657157 T
e nomLeu3.chr16             48099482 1890 + 100215132 I
e rheMac3.chr8              61645226 79 + 150158102 I
e chlSab2.chr8              53244300  8 + 139301422 I

a score=22499.000000
s hg38.chr8_KI270814v1_alt     30652 18 +    141812 AGGATTGCATGTTTGGCA
s panTro4.chr8              54970694 18 + 143986469 AGGATTGCATATTTGGCA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59011915 18 + 153482349 AGGATTGCATGTTTGGCA
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8              58375180 18 + 146850525 AAGATTGCATGTTTGGCA
i macFas5.chr8             C 0 T 55063
s calJac3.chrUn_GL286234       18303 18 +    110629 GGGATTGAACATTTGGCA
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179           2756944 17 +  10880647 GGGATTGCACGTTTGGC-
i saiBol1.JH378179         C 0 C 0
s xenTro7.KB021656         140633250 18 - 142678541 aggattcggtatttggct
i xenTro7.KB021656         N 0 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr8             174691130 6776 + 312544902 T
e taeGut2.chr1A             23692651 539 +  73657157 T
e nomLeu3.chr16             48099482 1890 + 100215132 I
e rheMac3.chr8              61645226 79 + 150158102 I
e chlSab2.chr8              53244300  8 + 139301422 I

a score=-4096.000000
s hg38.chr8_KI270814v1_alt     30670 16 +    141812 ---------------GAAGAAACACCTGCCA
s panTro4.chr8              54970712 16 + 143986469 ---------------GAAGAAACACCTGCCA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59011933 16 + 153482349 ---------------GAAGAAACACCTGCCA
i ponAbe2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       18321 11 +    110629 ----------------GAAGGACATCC----
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179           2756961  9 +  10880647 ------------------AGGACGTCC----
i saiBol1.JH378179         C 0 C 0
s xenTro7.KB021656         140633268 27 - 142678541 gaatctttcacaaaggattgggggtct----
i xenTro7.KB021656         C 0 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr8             174691130 6776 + 312544902 T
e taeGut2.chr1A             23692651 539 +  73657157 T
e nomLeu3.chr16             48099482 1890 + 100215132 I
e rheMac3.chr8              61645226 79 + 150158102 I
e macFas5.chr8              58375198 55063 + 146850525 T
e chlSab2.chr8              53244300  8 + 139301422 I

a score=116604.000000
s hg38.chr8_KI270814v1_alt     30686 141 +    141812 GAT--------------CAGATGTGAACGTGTGGCAGAAGGCCCATCCAGGAAGATTGCACACTGGG-----AAGAAGGAAGACCTGAGAACGTTGGACGGACAGCAGAAGGAGCGCCTTGGGAGATTGCCCGGTGGGGTGGTGGTAGCATCTGAGAGGA
s panTro4.chr8              54970728 141 + 143986469 GAT--------------CAGACGTGAACATGTGGCAGAAGGCCCATCCAGGAAGATTGCACACTGGG-----AAGAAGGAAGACCTGAGAACGTTGGACGGACAGCAGAAGGAGCGCCTCGGGAGATTGCCCGGTGGGGTGGCGGTAGCATCTGACAGGA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59011949 140 + 153482349 GAT--------------CAGACGTGAACGTGTGGCAGAAGGCCCATCCAGGAAGATTGCACACTGGG-----AAGAAGGAAGACCTGAGAACGTTGGAGGAACAGCAGAAGGGGTGCTTCGGGAGATTGCCCGGT-GGGTGGCGGTAGCATCTGAGAGGA
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8              58320135 154 + 146850525 GACAATTCAGTGTTTGGCAGACATGAACATACAACAGAAGGGCCATCCAGGAAGACTGCACACTGGG-----CAGAAGGAAGACTTAAGAACATTGCATGGACAGCAGAAGGAGTGCTTCAGGAGATTGCCTGGT-GGGCGGCAGGAACACCTGAGAGGA
i macFas5.chr8             T 55063 I 62743
s calJac3.chrUn_GL286234       18332 136 +    110629 AAG--------------AAGATG-GAATGTGCGGCTGAAGGGCCATCCAGGAGGATTGCACATTGGG-----CAGAAGGAAGACCTAAGGACACCGTGTGGACAGC---AGGAGTGCCTTTGGAGACGGCCTGGT-GGGTGGAGTGACCATCTGAGAGGA
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179           2756970 134 +  10880647 GAG--------------AAGATG-GAATGTGCGGCTGAAGGGCCGTCTGGGAGGATTGCACGTTGGG-----GAGAAGAAAGAGCTAAGGACACTGTGTGGACAGC---AGGAGTGCCTCTGGAGATGGCCTGGT-GGGTGGAGGGAGCATCT--CAGGA
i saiBol1.JH378179         C 0 C 0
s xenTro7.KB021656         140633295 136 - 142678541 --------------cgccaaacccaaaaataatgcatttagcgcatccctaCAAATAGTGAGCAGGGTGGGCTAGAAATGAAGCTGGGGAA------GGGGATAGG---AGACAGGCCCGGGGAGGATAGGAGGC-GGGTCAGGGGAGGATAGGAGGCGG
i xenTro7.KB021656         C 0 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr8             174691130 6776 + 312544902 T
e taeGut2.chr1A             23692651 539 +  73657157 T
e nomLeu3.chr16             48099482 1890 + 100215132 I
e rheMac3.chr8              61645226  79 + 150158102 I
e chlSab2.chr8              53244300   8 + 139301422 I

a score=35614.000000
s hg38.chr8_KI270814v1_alt     30827 60 +    141812 TTGCGGGGTGGGCGGGAGGATGAGCTGGGAAGGATGCAGGGCCTGGGAAGGTAACATATG
s panTro4.chr8              54970869 60 + 143986469 TTGCGGGGTGGGCGGGAGGATGAGCTGGGAAGGATGCAAGGCCTGGGGAGGTAACACATG
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59012089 60 + 153482349 TTGCGGGGTGGGCGGGAGGATGAGCTGGGAAGGATGCAAGGCCTGGGGAGGCAACATACG
i ponAbe2.chr8             C 0 C 0
s calJac3.chrUn_GL286234       18468 47 +    110629 CTGCAGGGTGGG-------------TGGGAAGACTGCAAGGCCTGCCACTGAAATGCCTA
i calJac3.chrUn_GL286234   C 0 C 0
s saiBol1.JH378179           2757104 60 +  10880647 CTGTGGGGTGGGCGGGAGGAGGGGCTGGGAAGACTGCAAGGCCTGCCGCTGAAATGCCTA
i saiBol1.JH378179         C 0 C 0
s xenTro7.KB021656         140633431 60 - 142678541 GTCAGGGGAGGATAGGAGGCGGGCCCGGGGAGGATAGGAGGCGGGTCAGGGGAGGATAGG
i xenTro7.KB021656         C 0 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr8             174691130 6776 + 312544902 T
e taeGut2.chr1A             23692651 539 +  73657157 T
e nomLeu3.chr16             48099482 1890 + 100215132 I
e rheMac3.chr8              61645226 79 + 150158102 I
e macFas5.chr8              58320289 62743 + 146850525 I
e chlSab2.chr8              53244300  8 + 139301422 I

a score=105953.000000
s hg38.chr8_KI270814v1_alt     30887 135 +    141812 AAGACGATTAAATATGTGGCAGGAGAAATACCT-GAGAAGATGGGATGCTTGCCAGGGG-AAACAAGGGACAG---AGTGGAGTGTTTGGGAGAAGGGATGCTT-AGGTAGATTGCACGTGTG-GCCAAAGGTACATATGAG
s panTro4.chr8              54970929 135 + 143986469 AAGACGATTAAATATGTGGCAGGAGAAACACCT-GAGAAGATGGGATGCTTGCCAGGGG-AAACAAGGGACAG---AGTGGAGTGTTTGGGAGAAGGGATGCTT-AGGTAGATTGCACGTGTG-GCCAAAGGTACACATGAG
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59012149 135 + 153482349 AAGATGATTAAATATGTGGCAGAAGAAACACCT-GAGAAGATGGGATGCTTGCCAGGGG-AAACAAGGGACAG---AGTGGAGTGTTTGGGAGAAGGGATGCTT-AGGTAGACTGCATGTGTG-GCAGAAGGTACACATGAG
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8              58383032 134 + 146850525 AAGATGAATGTATGTTTGGCAAAAGAA--ACCT-GACAGGATTGAATGTTTGTCAGAAA-GAACACTTGACAA---GAGTAATTTTTTGACAAAAGAAACATCT-GACAATATTGAATGGTTGAGAGAAAAAAACATCTGAG
i macFas5.chr8             I 62743 C 0
s calJac3.chrUn_GL286234       18515 134 +    110629 CAAACGACTAAACGTGTGGCAGGAGAAACACCT-GAGATGGTGGAACACCTGGC-GGGG-GAGCAAGGGACAC---AGTGGAGTGTTTGGCAAAAGGAAGGCTT-AGGTAGGTTGTGCATCTG-GCCGAAGGAACACGTGAG
i calJac3.chrUn_GL286234   C 0 N 0
s saiBol1.JH378179           2757164 136 +  10880647 CAAATGACTACACGTGTGGCAGGAGAAACACCT-GAGACAGTGGAATACCTGGCAGGGG-GAACAAGGGACAC---AGTGGAGTGTTTGGCAAAAGGAAGGCTTAAGGTAGGTTGTGCATCTG-CCCGAAGGAACACGTGAG
i saiBol1.JH378179         C 0 N 0
s xenTro7.KB021656         140633491 134 - 142678541 -AGGCGGGTCAGGGGAGGATAGGAGGCGGGCCCGGGGAGGATAGGAGGCGGGCCAGGGGAGGATAGGAGGCGGGCCAGGGGAG-----GATAGGAGGCAGGCCA-GGGGAGGATAGGAGGCGG-GTCAGGGGAGGATAGGAG
i xenTro7.KB021656         C 0 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr8             174691130 6776 + 312544902 T
e taeGut2.chr1A             23692651 539 +  73657157 T
e nomLeu3.chr16             48099482 1890 + 100215132 I
e rheMac3.chr8              61645226  79 + 150158102 I
e chlSab2.chr8              53244300   8 + 139301422 I

a score=2811.000000
s hg38.chr8_KI270814v1_alt     31022 9 +    141812 AAGGGTGAA
s panTro4.chr8              54971064 9 + 143986469 AAGGGTGAA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59012284 9 + 153482349 AAGGGTGAA
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8              58383166 9 + 146850525 AAGTGTCAT
i macFas5.chr8             C 0 I 23
s xenTro7.KB021656         140633625 9 - 142678541 GCAGGCCAG
i xenTro7.KB021656         C 0 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr8             174691130 6776 + 312544902 T
e taeGut2.chr1A             23692651 539 +  73657157 T
e nomLeu3.chr16             48099482 1890 + 100215132 I
e rheMac3.chr8              61645226 79 + 150158102 I
e chlSab2.chr8              53244300 8 + 139301422 I

a score=4154.000000
s hg38.chr8_KI270814v1_alt     31031 15 +    141812 TGGCGGACAGCAGAA
s panTro4.chr8              54971073 15 + 143986469 TGGCGGACAGCAGAA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59012293 15 + 153482349 TGGTGGACAGCAGAA
i ponAbe2.chr8             C 0 C 0
s xenTro7.KB021656         140633634 13 - 142678541 GGGAGGATAGGAG--
i xenTro7.KB021656         C 0 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr8             174691130 6776 + 312544902 T
e taeGut2.chr1A             23692651 539 +  73657157 T
e nomLeu3.chr16             48099482 1890 + 100215132 I
e rheMac3.chr8              61645226 79 + 150158102 I
e macFas5.chr8              58383175 23 + 146850525 I
e chlSab2.chr8              53244300  8 + 139301422 I

a score=104579.000000
s hg38.chr8_KI270814v1_alt     31046 333 +    141812 ACGTTGCAGCCGATGGCACGGCAGTGGGGAGGAAAACGTAGGAAGCATGGAAGTGCATGGCTTGCGAAAGAAGCATCTGAAGCCATGGCA------TGTCTGAGAGAGGACACA---------TCGGGCAAGATTCCACGTTTGGCAGTGG-GCCCATGAG---------------CGGAggcaga------------tgcgtatg--------ggcctgcgacagtctcggttcctgcctcctgagaagaaagtcatcaactgaggggcacaaggcagagggagagaccgaggcacgcataagagcagaggc---aaaagttcctgaaatggtatggtggcaggagccaaaggaagtcaaggaggc-ttggaagaggcccaggtggg
s panTro4.chr8              54971088 333 + 143986469 ACGTTGCAGCCGATGGCACGGCAGTGGGGAGGAAAACGTAGGAAGCATGGAAGTGCATGGCTTGCTGAAGAAGCATCTGAAGACGTGGCA------TGTCTGGGAGAGGACACG---------TCGGGCAAGATTCCACGTTTGGCAGTGG-GCCCATGAG---------------CGGAggcaga------------tgcgtatg--------ggcctgcggcagtctcggttcctgcctcctgagaagaaagtcatcaaccgaggggcacaaggcagagggagagaccgaggcacgcataagagcagaggc---gaaagttcctgaaacggtatggtggcaggagccaaaggaagtcaaggaggc-ttggaagaggcccaggtggg
i panTro4.chr8             C 0 I 2093
s ponAbe2.chr8              59012308 333 + 153482349 ACGTTGCAGCCGATGGCACGGCAGTGGGGAGGAAAACGTAGGAAGTGTGGAAGTGCATGGCCTGCGAAAGAAGCATCTGAAGAGATGGCA------TGTCTGGGAGAGGACACA---------TAGGGCAAGATTCCACGTTTGGCAGTGG-GCCCATGAG---------------CGGAggcaga------------tgcgtatg--------ggcccgcggcagtctcggttcctgcctcctgagaagaaagtcatcaaccaaggggcacaaggcagagggagagaccgaggcatgtgtaagagcagaggc---aaaagttcctcaaacggtatcgtggcaggagccaaaggaagtcaaggaggc-ttggaagaggcccaggtggg
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8              58383198 359 + 146850525 ATATCTTAGAAGATTGCATGGTTAACAGAAGGAAGACCTAGGAA------AATAGCATGGCCTACAAAAGAAACATCTGAATAGAATGAT------GACTTAGGAGAAAAAGCA---------TGTGATAGGATTAAATATTTTGCAGAGA-AAACACTAGAAAAGACTGAATGCTTGGAAGTAGAAATTTCAGTGTCTGTGGATG---GAAAaggtctgccctaacctaaaatcttgccttattagaagaaagaattcaactgtggagcatagagcagagtgagagacactgacaagttttagagcaggagt---gaaagtttattaaaaagtattaaagagggaatgaaaggaagcaaagtacac-ttggaagaggcccaagcatg
i macFas5.chr8             I 23 C 0
s xenTro7.KB021656         140633647 326 - 142678541 GCGGGTCAGGGGAGGATAGGAGGCGGGCCAGGGGAGGACAGGAGGCGGGCAAGGGGAGGGC------AAGAGGTGGGTCAGGGGAGGACAGGAGGCGGACCAGGGGAGGATAGGAGGAAAGGCCAGGGGAGGATAGGAGGTGGGCCAGGGGAGGACAGGAG---------------GCGGACCAGG------------GGAGGATAGGAGGAAAGGCCAG------------------------GGGAGGATAGAAGGTGGGCCAGGGG---AGGATAGAAGGTGGGCCAGGGG--AGGATAGGAGGAAAGGCCAGGGGAGGATAGGAGGTGGGCCAGGGGAGGATAGGAGGAAAGGCCAGGGGAGCATAGGAGGAGGACCAGGGGAG
i xenTro7.KB021656         C 0 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr8             174691130 6776 + 312544902 T
e taeGut2.chr1A             23692651 539 +  73657157 T
e nomLeu3.chr16             48099482 1890 + 100215132 I
e rheMac3.chr8              61645226  79 + 150158102 I
e chlSab2.chr8              53244300   8 + 139301422 I

a score=13509.000000
s hg38.chr8_KI270814v1_alt     31379 46 +    141812 cagcgacctgagaggt-gg---agtgcagggctggactgtggacttgggg
s panTro4.chr8              54973514 46 + 143986469 cggtgacctgagaggt-gg---agtacaggactggaccttggactcaggg
i panTro4.chr8             I 2093 C 0
s ponAbe2.chr8              59012641 46 + 153482349 cagtgacctgagaggt-gg---agtgcagggctggaccgtggactcgggg
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8              58383557 44 + 146850525 ---caacctgagagatcca---agtgcacagtttgacccttgacatgggt
i macFas5.chr8             C 0 C 0
s xenTro7.KB021656         140633973 42 - 142678541 ------GATAGGAGGT-GGGCCAGGGGAGGATAGGA-GGTGGGCCAGGGG
i xenTro7.KB021656         C 0 I 15
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr8             174691130 6776 + 312544902 T
e taeGut2.chr1A             23692651 539 +  73657157 T
e nomLeu3.chr16             48099482 1890 + 100215132 I
e rheMac3.chr8              61645226 79 + 150158102 I
e chlSab2.chr8              53244300  8 + 139301422 I

a score=203267.000000
s hg38.chr8_KI270814v1_alt     31425 832 +    141812 tctcccccactggcg-------------gcatcgctgccagtcccctgatgcttcccttggtgggggaagggcagtgctgtgcactggcgcagtggcctgtcagcaccttttgggggggtgcgggtggcagcgcaggcgccgtgtgctcactggagttgttcgcatggtcgcttgaggcgttcctcctgtaagcagacgaatgtgccc-gaggtaaaggtcgtaaagcagtgaacctcccaccagtttgcctctcagggtgcgtacgagagcccactcacctgacactcgaggtc-tgccggagag-------------gcttccgacgttcctgatagctgtggggggtggcggg--gctgcctttccctggcgccgcgtgcgaccagtgatatctctag----agagtctgcttcacgaacacctgagcatcacctcgcagccacctgatgttttctggtggtggggaaccctctcgggccccactcTGCACGTGTGACTGAGAGGGACACCTGACAGGATTGAACGTGTGCCAGAAGATCATCAAACGAGATGGAGTGTCTGG-GAAAGGAACGTCTGACAGCCCTGAGCATGTGGCAGAGGGAACATCTAAGCAGATTGCAGTGTTTTAGGAAGGAATGGCTAAGAACATCACATGGTCAGCAGGAGGAAACCTTAGGGTAGGAAGATTGCAGGGGTAT-GGTGGGGCAAGGGAACCCATGAGAAGACTGAGGGATCGGCAGTTGGACACCCTAGGCAGATTGCAAGGCCTGCCCGAGAGACATCTGGGAAGAGGAAGTATTGGGCCCACGGTGCGCCGGATAATACTGAGCACTTGTCAGGGGAAGGAATGGACGCAGTTGGC
s panTro4.chr8              54973560 815 + 143986469 tctctcgtgtcggca-------------gcatcactgcctgtcctctgatgcttcccttggcggggaagagg--gggctgttcgctagcacagtggcctgtcaccacctcctggggg-----------ca-cggaggcgccgtgtgcttactggagttgttctcgtgctctcttgaggctttcctcccccaagcagacgaatgtgcccaggggaaaacatcctagatgagtgaaccttccgccagtttgcgtctcagggcgcatgtgtgagcccattcacccaactcccgaggtg-tgctggggag-------------gcttctgaggttcgtgactgctgtggggga--ggggg--actgcctttccctggcgctgcctgtgatcagtgatttctctag----agagtctgcttcgtgaccaccgggccgtcaccttgcggctgcctgatgtttactggtggtggggaaccctctcgggccccgctcCACACATGTGACTGAGAGGGACACCTGACAGGATTGAACGCGTGGCAGA---TCATCCGACGAGATGGAGTGTCTGGTGGAAGGAACATCTGACAGCCCTGAGCGTGTGGCAGAGGGAACATCTAAGCAGACTGCAGCGATTTCAGAAGGAACGGCTAAGAATGTCGCATGGTCAGCAGGAGGAAACCGTAGGGTAGGGTGATTGCAGGGGGGC-TGGGGGGCAAGGGAACCCGTGAGAAGACTGCAGGATCAGCAGTTGGATGCCCTAGGGAGATTGCAAGGCCTGCCCAAGAGACATCTGGGTAGAGGAAGTACTGGGCCCATGGTGCGCCAGACAAAACTGAGTGCTTGTCAGGGGAAGAAGTGGACGCAACTGGC
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59012687 838 + 153482349 tctcccccattggcg-------------gcatcgctgccagtcccctgatgcttcccttggcggggaagggg-ggtgctgtgcactggcgcagtggcctgtcagcaccttgtaggggggtgggggtggcagcgcaggcgccgtgtgctcaccggagttgttcgtgtgctcgcttgaggtgttcctcctgtaagcagacgaatgtgccc-agggtaaaggtcatagagcagtgaacctcctgccagtttgcctctcagggtgcgtacgagagcccactcgccttacactcgaggtc-tgccggagag-------------gcttctgacgttcctgatggctgtggggggtgggggggtgctgcctttccctggcgccgtgtgcgaccagtgatatctctagatctagagtctgcttcacgaccacctgaccatcacctcgcagccacctgatgttttctggtagtggagaaccctctcgggccccactcTGCACGTGTGACTGAGAGGGACACCTGACAGGATTGAACATGTGGCAGAAGATCATCCAACGAGATGGAGTGTCTGG-GAAAGGAATGTCTGATAGCCCTAAGCATGTGGCAGAGGGAACATCTAAGCAGACTGCAGTGTTTTTGGAAGGAATGGCTAAGAACATCACATGGTCAGCAGGAGGAAACCTTAGGGTAGGAAGATTGCAGGGGGGCTGGTGGGGCAAGGGAACCCATGAGAAGACTGCGGGATCGGCAGTTGGACACCCTAGGCAGATTGCAAGGCCTGCCCGAGAGACATCTGGGAAGAGGAAGTATTGGGCCCACGGTGCGCTGGACAATACTGAGTGCTTGTCAGGGGAAGGAGTGGACGCAATTGAC
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8              58383601 694 + 146850525 ttttataggttggtagactttgggggatgcattac------ttctctgattcttccctt--------agagg--aggctct-cacatgtgcagtggcctgtcagctcttggaaggag-----------c--cacgtgtgcagagtctttattagagatatacgcacgctaacttgaggcattccacttttacctggtggattttttct-gag--aatggtcatataccagttaaact-ctgccattttgcctcttactgtgcatgcatgagcccattagcccagctcttgaaatcttatcaggaagtcactgatcactagcttcagatgtttccctttact----------gggag--tctgccttttactggtg------gtgaccaatgattattttag----agag--------------acctgaccatcacttcatggttgcctgacattc-ctagtgagaagaggccctctc-tgccctgct---aatgtctgact-----agctacctactgtaataGAA--------------ACATTGGCCAAGATTGAATGTTTGGTAGAAGAAACATCTGACAAGATTAAATATTTGACCAAAGAAACA-CTGGACAAGATTCAATAT-----------------------------TGGTTA----GAAGAAACATTGG----ACAAGATTGAA--------TGTTTGGCAAGAAAA-----------------------ACAGCT-GACA--------AGATTGGATGTTTGGTCTAAAAGACATCTGACAAGATTGAATGCTGGGGCAAAGAAACATCTGATAAAATTTAACATGTGGCAGGAGAAACAACTGA--CAATTGAA
i macFas5.chr8             C 0 T 1081
e xenTro7.KB021656         140634015  15 - 142678541 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr8             174691130 6776 + 312544902 T
e taeGut2.chr1A             23692651 539 +  73657157 T
e nomLeu3.chr16             48099482 1890 + 100215132 I
e rheMac3.chr8              61645226  79 + 150158102 I
e chlSab2.chr8              53244300   8 + 139301422 I

a score=4720.000000
s hg38.chr8_KI270814v1_alt     32257 18 +    141812 TGTTTGGCAGAAGGAACA
s panTro4.chr8              54974375 18 + 143986469 TGTTTGGCAGAAGGAACC
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59013525 18 + 153482349 TGTTTGGCAGAAGGAACA
i ponAbe2.chr8             C 0 I 5730
e xenTro7.KB021656         140634015 15 - 142678541 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr8             174691130 6776 + 312544902 T
e taeGut2.chr1A             23692651 539 +  73657157 T
e nomLeu3.chr16             48099482 1890 + 100215132 I
e rheMac3.chr8              61645226 79 + 150158102 I
e macFas5.chr8              58384295 1081 + 146850525 T
e chlSab2.chr8              53244300  8 + 139301422 I

a score=21989.000000
s hg38.chr8_KI270814v1_alt     32275 84 +    141812 CTCAGGTAGATTGCACGTTGGGCAGAAGGCCCAAGTGTGAAGATGACATGGAAGACAGCAGAAAGCCTTTAGCAGGTCGCACGG
s panTro4.chr8              54974393 84 + 143986469 CTCAGGTAGATTGCACGTTTGGCAGAAGGCCCAAGTGCGAAGATGACATGGTAGACAGCAGAAACCCTTCAGCAGGTCGCACGG
i panTro4.chr8             C 0 T 1353
s ponAbe2.chr8              59019273 84 + 153482349 CTCGGGTAGATTGCACGTTTGGCAGAAGGCCCAAGTGCGAAGATGACATGGTAGACAGCAGAAATCCTTTAGCAGGTCGCACGG
i ponAbe2.chr8             I 5730 T 1353
e xenTro7.KB021656         140634015 15 - 142678541 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr8             174691130 6776 + 312544902 T
e taeGut2.chr1A             23692651 539 +  73657157 T
e nomLeu3.chr16             48099482 1890 + 100215132 I
e rheMac3.chr8              61645226 79 + 150158102 I
e macFas5.chr8              58384295 1081 + 146850525 T
e chlSab2.chr8              53244300  8 + 139301422 I

a score=11811.000000
s hg38.chr8_KI270814v1_alt     32359 44 +    141812 TAGGGAGATTGCATGTGTGGCAGAAGGAACACGTGAGAAGGTTG
s panTro4.chr8              54973124 44 + 143986469 TAGGAAGATTGCATGTGTGGCAGAAGGAACATGTGAGAAGGTTG
i panTro4.chr8             T 1353 C 0
s ponAbe2.chr8              59018004 44 + 153482349 TAGGGAGATTGCATGTGTGGCAGAAGGAACATGTGAGAAAGTTG
i ponAbe2.chr8             T 1353 C 0
e xenTro7.KB021656         140634015 15 - 142678541 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr8             174691130 6776 + 312544902 T
e taeGut2.chr1A             23692651 539 +  73657157 T
e nomLeu3.chr16             48099482 1890 + 100215132 I
e rheMac3.chr8              61645226 79 + 150158102 I
e macFas5.chr8              58384295 1081 + 146850525 T
e chlSab2.chr8              53244300  8 + 139301422 I

a score=357084.000000
s hg38.chr8_KI270814v1_alt     32403 1163 +    141812 CCATGGTGGACAGCAGAAAAATTGCAGCCGATGGCACAGCGGTGGGGAGGAAAACATAGGAAGCTTGCAAGCGCGTGGCCTGCGAAAGAAGCATCTGA------------------AGAgatggcatg---------------tctggcagaggacacattgggcaagattccacgtttggcagcAGGCCCGTGagcggcgacagacgcgtatgggcctgtggcaacctcggttcctgcctcctgagaagaaagacatcgagtg----gcacacggtagagtgagagaccgaggcacgcattagagcaggggcgaaagttcctgaaatggtatcgtggcaggagccaaaggaagtcaaggaggcttggaagaggcccaggtgggcggtgacctgagaggt-ggagtacaggactggaccttggactcagggtctcccgcgtcggca-------------gcatcgctgcctgtcctctgatgcttccctcggcggggaagagggggctgttcactagcacagtggcctgtcaccatctcatgggggcgcggaggcgccgtgtgcttactggagttgttctcatgctctcttgaggcgttcctcccacaagcagatgaatgtgcccaggggaaaacatcccagatcagtgaaccttccaccagtttgcctctcagggtgcacgtgtgagcccattcacccaactcccgaggtgtgctgggga--------------ggcttctgaggttcgtgactgctgtgggggagggggactgcctttccctggtgctgcctgtgatcagtgatttctctagagagtctgcttcgtgaccaccgggccatcaccttgcggctgcctgatgtttactggtggtggggaaccctctcgggccccgctcCACACGTGTGACTGAGAGGGACACCTGACAGGATTGAACGCGTGGCAGATCATCCGACGAGATGGAGTGTCTGGTGGAAGGAACATCTGACAGCCCTGAGCGTGTGGCAGAGGGAACATCTAAGCAGACTGCAGCGAT-TTCAGAAGGAACGGCTAAGAACATCGCATGGTCAGCAGGAGGAAACCTTAGGGTAGGGTGATTGCAGGGGTGCTGGGGGGCAAGGGAACCCGTGAGAAGACTGCGGGATCAGCAGTTGGATGCCCTAGGGAGATTGCAAGGCCTGCCCAAGAGACATCTGGGTAGAGGAAGTATTGGGCCCATGGTGCGCCA
s panTro4.chr8              54973168 1162 + 143986469 CCGTGTTGGACAGCAGAAAAATTGCAGCCGATGGCACAGCGGTGGGGAGGAAAACATAGGAAGCTTGCAAGTGCGTGGCCTGTGAAAGAAGCATCTGA------------------AGAGATGGCATG---------------TCTGGCAGAGGACACGTTGGGCAAGATTCCACGTTTGGCAGCACACCCGTGAGcggcggcatacgcgtatgggcctgtggtaac-tcagttcctgcctcctgagaagaaagacatcgagtg----gcacacggtagagtgagagaccgaggcacgcattagagcaggggtgaaagttcctgaaatggtatcgtggcaggagccaaaggaagtcaaggaggcttggaagaggcccaggtgggcggtgacctgagaggt-ggagtacaggactggaccttggactcagggtctctcgtgtcggca-------------gcatcactgcctgtcctctgatgcttcccttggcggggaagagggggctgttcgctagcacagtggcctgtcaccacctcctgggggcacggaggcgccgtgtgcttactggagttgttctcgtgctctcttgaggctttcctcccccaagcagacgaatgtgcccaggggaaaacatcctagatgagtgaaccttccgccagtttgcgtctcagggcgcatgtgtgagcccattcacccaactcccgaggtgtgctgggga--------------ggcttctgaggttcgtgactgctgtgggggagggggactgcctttccctggcgctgcctgtgatcagtgatttctctagagagtctgcttcgtgaccaccgggccgtcaccttgcggctgcctgatgtttactggtggtggggaaccctctcgggccccgctcCACACATGTGACTGAGAGGGACACCTGACAGGATTGAACGCGTGGCAGATCATCCGACGAGATGGAGTGTCTGGTGGAAGGAACATCTGACAGCCCTGAGCGTGTGGCAGAGGGAACATCTAAGCAGACTGCAGCGAT-TTCAGAAGGAACGGCTAAGAATGTCGCATGGTCAGCAGGAGGAAACCGTAGGGTAGGGTGATTGCAGGGGGGCTGGGGGGCAAGGGAACCCGTGAGAAGACTGCAGGATCAGCAGTTGGATGCCCTAGGGAGATTGCAAGGCCTGCCCAAGAGACATCTGGGTAGAGGAAGTACTGGGCCCATGGTGCGCCA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59018048 1162 + 153482349 CCATGGTGGACAGCAGAAAAATTGCAGCCGATGGCACAGTGGCAGGGAGGAAAACATAGGAAGCTTGCAAGTGCGTGGCCTGCAAAAGAAACATCTGA------------------AGAGACGGCATG---------------TCTGGCAGAGGACACATTGGGCAAGATT-TGCATTTGGCAGCGGGCCTGTGAGcggcggcagaggcatatgggcctgcggcaacctcagttcctgcctcctgagaagaaagacattgagtg----gcacacggtagagtgatagactgaggcacgcatgagagcaggggcgaaagttcctgaaacggtattgtggcaggagccaaaggaagtcaaggaggcttggaagaggcccaggtgggcggcgacttgagaggt-ggagtgcaggactggaccttggactccgggtctcccgcgttggca-------------gcatcgctgcctgtcccctgatgcttcccttggtggggaagagggggctgttcactggcacagtggcctgtcacaacctcgtgtgggggcggaggcgctgtgtgcttactggagttgtttgcatgctctcttgaggcattcctcccacaagcagacgaatgtgcccaggggaaaacatcctagatcagtgaacctcccgccagtttgcctctcagggcgcatgtgtgagcccatttacccaactcccaaggtgtgctgggga--------------ggcttctgaccttcgtgactgctgtggaggagggggactgcctgtccctggcgctgcctgtgatcagtgatttttctagcgagtctgcttcgtgaccaccgggccatcaccttgcggctgcatgatgtttaccggtggtggggaaccctctcgggccccgctcCACACGTGTGACTGAGAGGGACACCTGACAGGATTGAACGCGTGGCAGATCATCCGACGAGATGGAGTGTCTGGTGGAAGGAACATCTGACAGCCCTGAGCGTGTGGCAGAGGGAACATCTAAGCAGACTGCAGCGAT-TTCAGAAGGAACGACTAAGAACATCGCATGGTCAGCAGGAGGAAACCTTAGGGTAGGGAGATTGCAGGGGAGCTGGGGGACAAGGGAACCCGTGAGAAGACTGCGGGATCAGCAGTTGGATGCCCTAGGGAGATTGCAAGGCCTGCCTAAGAGACATCTGGGTAGAGGAAGTATTGGGCCCATGGTGCACCA
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8              58383214 1038 + 146850525 -CATGGTTAACA---------------------------------GAAGGAAGACCTAGGAA------AATAGCATGGCCTACAAAAGAAACATCTGAATAGAATGATGACTTAGGAGAAAAAGCATGTGATAGGATTAAATATTTTGCAGAGAAAACACTAGAAAAGACTGAATGCTTGGAAGTAGAAATTTCAGTGTCTGTGGATG-GAAAaggtctgccctaacctaaaatcttgccttattagaagaaagaattcaactgtggagcatagagcagagtgagagacactgacaagttttagagcaggagtgaaagtttattaaaaagtattaaagagggaatgaaaggaagcaaagtacacttggaagaggcccaagcatgc---aacctgagagatccaagtgcacagtttgacccttgacatgggtttttataggttggtagactttgggggatgcattac------ttctctgattcttccctt--------agaggaggct-ctcacatgtgcagtggcctgtcagc-tcttggaaggagccacgtgtgcagagtctttattagagatatacgcacgctaacttgaggcattccacttttac-ctggtggattttttctgag--aatggtcatataccagttaaact-ctgccattttgcctcttactgtgcatgcatgagcccattagcccagctcttgaaatcttatcaggaagtcactgatcactagcttcagatgtttccctttact--------gggagtctgccttttactggtg------gtgaccaatgattattttagagag--------------acctgaccatcacttcatggttgcctgacattc-ctagtgagaagaggccctctc-tgccctgct---aatgtctgact-----agctacctactgtaataGAAA-----------CATTGGCCAAGATTGAATGTTTGGTAGAAGAAACATCTGACAAGATTAAATATTTGACCAAAGAAACA-CTGGACAAGATTCAATATTGGTTAGAAGAAACATTGGACAAGATTGAATGTTT---------------------------------------------GGCAAGAAAAACAG--------------------------------CTGACAAGATTGGATGTTTGGTCTAAAAGACATCTGACAAGATTGAATGCTGGGGCAAAGAAACATCT
i macFas5.chr8             T 1081 T 5658
e xenTro7.KB021656         140634015   15 - 142678541 I
e ornAna1.Ultra479           3871811  995 -   6008416 T
e tetNig2.chr13              4300044  851 -  13302670 T
e punNye1.JH419232           4767720  338 +   5065651 T
e mayZeb1.JH720588           2493684  338 +   2778784 T
e hapBur1.JH425411           1657068  338 +   1983257 T
e neoBri1.JH422276           4185134  338 -  16571924 T
e araMac1.KE026486              3582  666 -     24340 T
e astMex1.KB882082           3904961  703 -   8876373 T
e takFla1.KE120500            511214  428 +    663757 T
e fr3.chr9                   3741472  428 -  13922460 T
e ficAlb2.chr1A             24321356  629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397  565 +  32995986 T
e zonAlb1.KB913045          12582078  625 +  16390125 T
e colLiv1.KB375358           1019695  647 +   1462937 T
e allMis1.JH737798             79979  829 +    106177 T
e falPer1.KB391107           2216113  646 -   3101084 T
e falChe1.KB398074           4263496  646 -   7151304 T
e macEug2.GL108065             83888  651 -    187545 T
e galGal4.chr1              24067632  655 + 195276750 T
e geoFor1.JH739914           5157808  631 -   7168866 T
e melGal1.chr1              24929366  674 + 204065131 T
e anaPla1.KB743807              6030  614 +     81650 T
e amaVit1.KB277496              7479  640 -     10329 T
e apaSpi1.KB929668           5961518  314 -  12308914 T
e cheMyd1.KB478633           2433661  653 +   6037886 T
e chrPic2.chr2              18523590  672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr8             174691130 6776 + 312544902 T
e taeGut2.chr1A             23692651  539 +  73657157 T
e nomLeu3.chr16             48099482 1890 + 100215132 I
e rheMac3.chr8              61645226   79 + 150158102 I
e chlSab2.chr8              53244300    8 + 139301422 I

a score=24304.000000
s hg38.chr8_KI270814v1_alt     33566 63 +    141812 GACAAAACTGAATGCTTGTCAGGGGAAGAAGTGGACGCAACTGGCTGTTTGGCAGAGGGAACC
s panTro4.chr8              54974330 63 + 143986469 GACAAAACTGAGTGCTTGTCAGGGGAAGAAGTGGACGCAACTGGCTGTTTGGCAGAAGGAACC
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59019210 63 + 153482349 GACAAGACTGAGTGCTTGTCAGGGGAAGAAGTGGACGCAACTGGCTGTTTGGCAGAAGGAACA
i ponAbe2.chr8             C 0 T 5730
s macFas5.chr8              58378594 62 + 146850525 GACAAGACTGAATGTTTGGCGGAAGAACATCT-GACATATTTGAATTTTTGGCAGAAGAAACA
i macFas5.chr8             T 5658 C 0
e xenTro7.KB021656         140634015 15 - 142678541 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr8             174691130 6776 + 312544902 T
e taeGut2.chr1A             23692651 539 +  73657157 T
e nomLeu3.chr16             48099482 1890 + 100215132 I
e rheMac3.chr8              61645226 79 + 150158102 I
e chlSab2.chr8              53244300  8 + 139301422 I

a score=108899.000000
s hg38.chr8_KI270814v1_alt     33629 315 +    141812 -CTCAGGTAGATTGCACGTTTGGCAGAAGGCCCAAGTGTGAAGATGACATGGTAGACAGCAGAAACCCTTTAGCAGGTCGCACGGTGGGCAGAAGGAACCTCTGAGCAGATTCCATGGTGGGCAGACGGAATGCCTAGGAAGAGTGCGTGGCTTGCAAAGGAAG-------CATCTGGAAAGAGGGAACATCTGGGAGAGAAAACATCCACCAAGATGGAGCGTTTggcggtagggatgtcagcggtggcagatccataggggcctgcaggcagcaacccgagctctcacctcatcagacggagtttaactgaggggcgtgag
s panTro4.chr8              54974393 315 + 143986469 -CTCAGGTAGATTGCACGTTTGGCAGAAGGCCCAAGTGCGAAGATGACATGGTAGACAGCAGAAACCCTTCAGCAGGTCGCACGGTGGGCGGAAGGGACCTCTGAGCAGATTCCATGGTGGGCAGATGGAATGCGTAGGAAGAGTGCGTGGCTTGCAAAGGAAG-------CATCTGGAAAGAGGGAACATCTGGGAGAGAAAACATCCACCAAGGTGGAGCGTTTggcggtagggatgtcagcggtggcagatccataggggcctgcacgcagcaacccgagctctcgcctcatcagagggagtttaactgaggggcgtgag
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59013543 315 + 153482349 -CTCAGGTAGATTGCACGTTTGGCAGAAGGCCCAAGTGCGAAGATGACATGGTCGACAGTAGAAACCCTTAAGCAGGCCACACGGTGGGCAGAACGAACCTCTGAGCAGATTCCACGGTGGGCAGACGGAATGCCTAGGAAGAGTGCGTGGCATGCAAAGAAAA-------CATCTGGAAAGAGGGAACATTTGGGAGAGAAAACATCCACCAAGATGGAGCATTTAGCCGTAGGGATgtcagcagcggtggatccctaggggcctacatgcagtaatccaagctcttgcctcatcagagggagtttgactgaggggcatgag
i ponAbe2.chr8             T 5730 C 0
s macFas5.chr8              58378656 312 + 146850525 TCTAAGATGTAGT----ATTTGGCAGAAGAGACATCTAAGAGCATTGCGTGGT---CAGCAGGAACCCTGAGGGAGATGGCATGGTAGGCAGAGGAAGTATCTAAAAAGATTGCACAGTCTGCATAAGGATGACCTAGGAAGAGTGCATGGCCTGCAAAAGAAAAGATTCTAATCTGAAAAGATTAAATATTTGGCACGGGAAACATCTGATAAGGTTCAATGTTTGTTAGTAAAAATgttagtggtggcagatttgcatgtgtc----ggcagcaacctgaattgcctccccagaagaaagaattcaacggagggatataag
i macFas5.chr8             C 0 C 0
e xenTro7.KB021656         140634015  15 - 142678541 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr8             174691130 6776 + 312544902 T
e taeGut2.chr1A             23692651 539 +  73657157 T
e nomLeu3.chr16             48099482 1890 + 100215132 I
e rheMac3.chr8              61645226  79 + 150158102 I
e chlSab2.chr8              53244300   8 + 139301422 I

a score=1102.000000
s hg38.chr8_KI270814v1_alt     33944 10 +    141812 gcggagtgaa
s panTro4.chr8              54974708 10 + 143986469 gcggggtgaa
i panTro4.chr8             C 0 C 0
s macFas5.chr8              58378968  8 + 146850525 gcagagtg--
i macFas5.chr8             C 0 C 0
e xenTro7.KB021656         140634015 15 - 142678541 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr8             174691130 6776 + 312544902 T
e taeGut2.chr1A             23692651 539 +  73657157 T
e nomLeu3.chr16             48099482 1890 + 100215132 I
e rheMac3.chr8              61645226 79 + 150158102 I
e chlSab2.chr8              53244300  8 + 139301422 I
e ponAbe2.chr8              59013858  0 + 153482349 C

a score=43141.000000
s hg38.chr8_KI270814v1_alt     33954 115 +    141812 agagaccgaggcctgtttgagcgcaggagtgcaggtctcccagatgataccagagcagaaagacgaggcagtaaggtatacttggaagagggccatgtgggcaactggagaggtc
s panTro4.chr8              54974718 115 + 143986469 agagaccgaggccactttgagcgcaggagtgcaggtctcccagatagtaccagagcagaaagatgaggcagtaaggtatacttggaagagggccatgtgggcaactggagaggtc
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59013858 115 + 153482349 agagaccaaggccattttgagcacgggagtgcctgtctcccagatagtaccagagcagaaaggcgaggcagtaacgtatacttagaagagggccacgtgggcaactggagaggtc
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8              58378976 115 + 146850525 agaggcaaaggcaagttttagagcaggagtgaaagtttcttaaaaagcattagagcagaaacaaaagaaaataaagtacatgtggaagaaagcaaagtgggtggcttgagagatc
i macFas5.chr8             C 0 I 30
e xenTro7.KB021656         140634015  15 - 142678541 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr8             174691130 6776 + 312544902 T
e taeGut2.chr1A             23692651 539 +  73657157 T
e nomLeu3.chr16             48099482 1890 + 100215132 I
e rheMac3.chr8              61645226  79 + 150158102 I
e chlSab2.chr8              53244300   8 + 139301422 I

a score=16085.000000
s hg38.chr8_KI270814v1_alt     34069 65 +    141812 gggggcacgctttgttcgacctttgag---gcgaggtctcacacattggcaggcttccaagagccagg
s panTro4.chr8              54974833 65 + 143986469 aggggcacactttgttcgacctttgag---gtgaggtctcacagattggcaggcttccaagagccagg
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59013973 68 + 153482349 aggggcacgcttcgttcgacctttgaggctgcgaggtctcacacattggcaggcttccaggagccagg
i ponAbe2.chr8             C 0 C 0
e xenTro7.KB021656         140634015 15 - 142678541 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr8             174691130 6776 + 312544902 T
e taeGut2.chr1A             23692651 539 +  73657157 T
e nomLeu3.chr16             48099482 1890 + 100215132 I
e rheMac3.chr8              61645226 79 + 150158102 I
e macFas5.chr8              58379091 30 + 146850525 I
e chlSab2.chr8              53244300  8 + 139301422 I

a score=7597.000000
s hg38.chr8_KI270814v1_alt     34134 24 +    141812 ggttgcattgcttcctcccctgag
s panTro4.chr8              54974898 24 + 143986469 ggttgcattgcttcctcccctgag
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59014041 22 + 153482349 ggttgcgttgcttcct--cctgag
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8              58379121 23 + 146850525 ggttgtgtta-tttttcccctgat
i macFas5.chr8             I 30 T 60815
e xenTro7.KB021656         140634015 15 - 142678541 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr8             174691130 6776 + 312544902 T
e taeGut2.chr1A             23692651 539 +  73657157 T
e nomLeu3.chr16             48099482 1890 + 100215132 I
e rheMac3.chr8              61645226 79 + 150158102 I
e chlSab2.chr8              53244300  8 + 139301422 I

a score=6987.000000
s hg38.chr8_KI270814v1_alt     34158 11 +    141812 ccttttctcag
s panTro4.chr8              54974922 11 + 143986469 ccttttcgcag
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59014063 11 + 153482349 ccttttcgcag
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48101372 11 + 100215132 CCttttcacgt
i nomLeu3.chr16            I 1890 C 0
s macFas5.chr8              58318329 11 + 146850525 CCTTTTTGCAT
i macFas5.chr8             T 60815 C 0
e xenTro7.KB021656         140634015 15 - 142678541 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr8             174691130 6776 + 312544902 T
e taeGut2.chr1A             23692651 539 +  73657157 T
e rheMac3.chr8              61645226 79 + 150158102 I
e chlSab2.chr8              53244300  8 + 139301422 I

a score=462418.000000
s hg38.chr8_KI270814v1_alt     34169 321 +    141812 ggtgggccatccacatgggcagtggcctgtcatcacctgggagggaccgcaggcgtggcgtgtttcctggagtcataggggcgctcacatgaggcgtgcctcccttggcagtcggatgttgcctggggagggtcgtaggacagtaaaacccggccggtttgcctgtgagtgtgcaagcatgagccccgtcacgcgccccctgagatcttctcagggagctgctaatcgccaccttccggggtttctgtctgtctgggggaccgcccgtccctggcaccggctcccggcaatcatttattatttgagacaggtagtttaatg
s panTro4.chr8              54974933 313 + 143986469 ggtgggccatccacatgggcagtggcctgtcgtcacctgggagggaccgcaggcgtggcgtgtttcctggagtcataggggcgctcacatgaggcgtgcctcccttggcagtcggctgttgcctggggagggtcataggacagtaaaacccggccggtttgcctgtgagggtgcaagcgtgagccccctcacccgccccctgagatcttctcagggagctgctaatcgccaccttcc--------tgtctgtctgggggaccgcccgtccctggcaccggctcccggcaatcatttgttatttgagacaggtagtttagtg
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59014074 321 + 153482349 ggtggactgtccacatgggaggtggcctgtcggcacttgggaggggccacaggcgcagcgtgtttcctggagtcctgggggtgctcacttgaggcgtgcctccctcggcagtcggatgttgcccagggagggtcatagaacagtgaaacccggccggtttgcctgttagtgtgcatgcatgagccccctcacccgccccctgagatcttctcgggaagctgctcatcaccaccttccagggtttctgtctgtctgggggactgcccatccgtggcgccagctcccggcaatcatttgttatttgagagaggcagtttaaca
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48101383 320 + 100215132 ggtgtgctgtccacattggctgtgtcctgttgacagctgggaggggccataggcatggcgtttttcctgcagttgcaggcactctcacttgaggagtgtctttttcggcagtaggatgttgcccggggaaggtcatagggtagtgaaacctggccggtgtgcctgtgaggaggtgtgtgtgagccccctcgcctgcctcctgataccttcttgaggagctgctcatcaccaccttctgggatttctgtctgttgggggcactg-ccgtccctggcgccccctcgcagccatcatttcttatttgagaaaggcaatttaacg
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8              61645305 321 + 150158102 ggtgggctgtccacatcggcggtgtcctgttgacagctgggaggggccacaggcatgacatttttcctgcagttgtaagtgctctcacttgaggcgtgcctttttcggcagtaggatgttgcctggggagggtcatagggcagtaaaacctggccagtatgcctgtgaggaggtgtgtgtgagctcccttgtccgtctcctgagatcttcttggggagctgctcatcaccaccttctggaatttctttctgttgtggggactgcccatccctggtgacctctcccagccatcttttcttattttagaatggcaatttaaca
i rheMac3.chr8             I 79 C 0
s macFas5.chr8              58318340 321 + 146850525 ggtgggctgtccacatcggcggtgtcctgttgacagctgggaggggccacaggcatgacgtttttcctgcagttgtaagtgctctcacttgaggcgtgcctttttcggctgtaggatgttgcctggggagggtcatagggcagtaaaacctggccagtatgcctgtgaggaggtgtgtgtgagctcccttgtccgtctcctgagatcttcttggggagctgctcatcaccaccttctggaatttctttctgttgtggggactgcccatccctggtgacctctcccagccatcttttcttattttagaatggcaatttaaca
i macFas5.chr8             C 0 T 2326
s chlSab2.chr8              53244308 321 + 139301422 ggtgggctgtccacatcggcggtgtcctgttgacagctgggaggggccacaggcatgacgtttttcctgcagttgtaagtgctctcccttgaggcgtgcctttttcggcagtaagatgttgcctggggagggtcatagggcagtaaaacctggccagtatgcctgtgaggaggtgtgtgtgagctcccttgcccgtctcctgagatcttcttggggagctgctcatcaccaccttctggaatttctgtctgttgtggggactgcccatccctggcgacccctgccagccatcttttcttattttggaatggcaatttaaca
i chlSab2.chr8             I 8 C 0
e xenTro7.KB021656         140634015  15 - 142678541 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr8             174691130 6776 + 312544902 T
e taeGut2.chr1A             23692651 539 +  73657157 T

a score=1672.000000
s hg38.chr8_KI270814v1_alt     34490 3 +    141812 gca
s panTro4.chr8              54975246 3 + 143986469 gca
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59014395 3 + 153482349 gca
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48101703 3 + 100215132 atg
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8              61645626 3 + 150158102 acg
i rheMac3.chr8             C 0 C 0
s macFas5.chr8              58316335 3 + 146850525 gcc
i macFas5.chr8             T 2326 C 0
s chlSab2.chr8              53244629 3 + 139301422 gcg
i chlSab2.chr8             C 0 T 2334
e xenTro7.KB021656         140634015 15 - 142678541 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr8             174691130 6776 + 312544902 T
e taeGut2.chr1A             23692651 539 +  73657157 T

a score=13620.000000
s hg38.chr8_KI270814v1_alt     34493 8 +    141812 gcctgacc
s panTro4.chr8              54975249 8 + 143986469 gcctgacc
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59014398 8 + 153482349 gtctgacc
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48101706 8 + 100215132 gcctgccc
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8              61645629 8 + 150158102 gcctgatc
i rheMac3.chr8             C 0 T 2322
s macFas5.chr8              58316338 8 + 146850525 gcctgacc
i macFas5.chr8             C 0 I 3
s chlSab2.chr8              53242298 8 + 139301422 gcctgacc
i chlSab2.chr8             T 2334 I 3
e xenTro7.KB021656         140634015 15 - 142678541 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr8             174691130 6776 + 312544902 T
e taeGut2.chr1A             23692651 539 +  73657157 T

a score=138344.000000
s hg38.chr8_KI270814v1_alt     34501 90 +    141812 cgtcgcctcctggtcgcctgatgtgtctggtggggtgtgggcgtggccctctcccgcgctgctcctgtctgaccagccgcccacggtaac
s panTro4.chr8              54975257 80 + 143986469 cgtcacctcctggtc--------tgtctggtggggtgtgggcgtggccctc--ctgcgctgctcctgtgtgaccagccgcccacggtaac
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59014406 90 + 153482349 agttgcctcctggtcacctgaggtatttggtggagtgtgggcgtggccctctcctgcgctgctcctgtctgaccagctgcccactgtaac
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48101714 90 + 100215132 cgtcacttcctggtcacctgacgtatctggtggggtgtgggctagaccctcttaggcgctactcctgtgtgtccagccatccacagtaac
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8              61643315 90 + 150158102 cgtcacctcctgttcacctgacatgtctggtggggtgtgggcggggccctctcctgcgctgctcctgtctgaccagctgcccacggtaac
i rheMac3.chr8             T 2322 C 0
s macFas5.chr8              58316349 90 + 146850525 cgtcacctcctgttcacctgacatgtctggtggggtgtgggcggggccctctcctgtgctgctcctgtctgaccagctgcccacggtaac
i macFas5.chr8             I 3 C 0
s chlSab2.chr8              53242309 90 + 139301422 cgtcacctcctggtcacctgacatgtctggtggggtgtgggtggggccctctcctgcgctgctcctgtctgaccagccacccacggtaac
i chlSab2.chr8             I 3 C 0
e xenTro7.KB021656         140634015 15 - 142678541 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr8             174691130 6776 + 312544902 T
e taeGut2.chr1A             23692651 539 +  73657157 T

a score=182326.000000
s hg38.chr8_KI270814v1_alt     34591 103 +    141812 aCAGAAACATCTGGCAGGATGGAGTGGTTGGCGGAAGACACATCTGACGAGATCGAATGTTTTGCAGAAGAGCCATGTGACGGGATCCGTGGTTTGGCAGAGG
s panTro4.chr8              54975337 103 + 143986469 aCAGAAACATCTGGCAGGATGGAGTGGTTGGCGGAAGACACATCTGACGAGATGGAATGTTTTGCAGAAGAGCCATGTGACCGGATCTCTGGTTTGGCAGAGG
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59014496 103 + 153482349 aCAGAAACATCTGGCAGGATGGAATGCCTGGTGGAAGACACTTCTGATGAGATTGAATGTTTTGCAGAAGAGCCATGTGACCGGATCCCTGGTTTGGCAGAGG
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48101804 103 + 100215132 aCGGAAACATCTGGCAGGATGGAATGGTTGGTGGAAGACACTTCTGATGAGGTCGAATGTTTTGCAGAAGAGCCGTGTGATCGGATCCCTGGTTTGGCAGAGT
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8              61643405 103 + 150158102 aCAGAAACATCTGGCAGGATGGAATGGTTGGCAGAAGACACGTCTGACGACATCAAATGTTTTGCAGAAGAGCCATGTGACTGGATCCCTAGTTTGGCAGAGG
i rheMac3.chr8             C 0 C 0
s macFas5.chr8              58316439 103 + 146850525 aCAGAAACATCTGGCAGGATGGAATGGTTGGCAGAAGACACGTCTGACGACATCAAATGTTTTGCAGAAGAGCCATGTGACTGGATCCCGAGTTTGGCAGAGG
i macFas5.chr8             C 0 C 0
s chlSab2.chr8              53242399 103 + 139301422 aCAGAAACATCTGGCAGGATGGAATGGTTGGCGGAAGAAATGTCTGATGACATCAAATGTTTTGCAGAAGAGCCATGTGACCGGATCCCCAGTTTGGCAGAGG
i chlSab2.chr8             C 0 C 0
s monDom5.chr5               9604900 103 - 304825324 AAAGAGGGATCTTAGAACATAGAATGTTAGAGAAAAGAGGGATCTTAGAACATGGAATGTTAGCGAAAAGAGGGATCTCAGAGCATGGAATGTTAGAGAAAAG
i monDom5.chr5             n 6776 C 0
e xenTro7.KB021656         140634015  15 - 142678541 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e taeGut2.chr1A             23692651 539 +  73657157 T

a score=1365.000000
s hg38.chr8_KI270814v1_alt     34694 1 +    141812 A
s panTro4.chr8              54975440 1 + 143986469 A
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59014599 1 + 153482349 A
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48101907 1 + 100215132 A
i nomLeu3.chr16            C 0 C 0
s chlSab2.chr8              53242502 1 + 139301422 A
i chlSab2.chr8             C 0 C 0
s monDom5.chr5               9605003 1 - 304825324 A
i monDom5.chr5             C 0 C 0
e xenTro7.KB021656         140634015 15 - 142678541 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e taeGut2.chr1A             23692651 539 +  73657157 T
e rheMac3.chr8              61643508 0 + 150158102 C
e macFas5.chr8              58316542 0 + 146850525 C

a score=69710.000000
s hg38.chr8_KI270814v1_alt     34695 55 +    141812 GACATGCGAGAAGACGGA-ACGTTTTGTCCGAATAGACATCTGGCAGGGTGGAACG
s panTro4.chr8              54975441 55 + 143986469 GACATGCGAGAAGACGGA-GCGTTTTGTCCGAACAGACATCTGGCAGGGTGGAATG
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59014600 55 + 153482349 GAAATGTGAGAAGATGGA-ACGTTTTTGCTGAAGAGACCTCTGGCAGAGTGGAATG
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48101908 53 + 100215132 GACATGTGAGAAGACTGA-CAGTTTCGTC-GTTGAAACCTCTTA-AAGGTGGAATG
i nomLeu3.chr16            C 0 T 2303
s rheMac3.chr8              61643508 56 + 150158102 GACATGTGAGAGGACAGATACGTTTTGGCCGAAGAGACATCTAGCAGGGTGGAACA
i rheMac3.chr8             C 0 C 0
s macFas5.chr8              58316542 56 + 146850525 GACATGTGAGAGGACAGATACGTTTTGGCCGAAGAGACATCTAGCAGGGTGGAACA
i macFas5.chr8             C 0 C 0
s chlSab2.chr8              53242503 55 + 139301422 GACATGTGAGAGGACAGA-ACGTTTTGGCCGAAGAGACATCTGGCAGGGTGGAACA
i chlSab2.chr8             C 0 C 0
s monDom5.chr5               9605004 54 - 304825324 GGGACCTTAGAACATGGA-ATGTTAGAGA-AAAGAGGGACCTTAGAACATAGAATG
i monDom5.chr5             C 0 I 3
e xenTro7.KB021656         140634015 15 - 142678541 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e taeGut2.chr1A             23692651 539 +  73657157 T

a score=45043.000000
s hg38.chr8_KI270814v1_alt     34750 40 +    141812 GAGAGAACAGGTA---TGGTGGAGAGAACGTCTGAGAAGGTCG------
s panTro4.chr8              54975496 40 + 143986469 GAGAGAACAGGTA---TGGTGGAGAGAACGTCTGAGAAGGTCG------
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59014655 38 + 153482349 GAGAGAATAGG-----TGGCAGAGAGAACCTCTGAGAAGCTCG------
i ponAbe2.chr8             C 0 C 0
s rheMac3.chr8              61643564 40 + 150158102 GAGAGAACAGGTG---TGGCAGAGAGAAAGTCTGAGAAGCTTG------
i rheMac3.chr8             C 0 C 0
s macFas5.chr8              58316598 40 + 146850525 GAGAGAACAGGTG---TGGCAGAGAGAAAGTCTGAGAAGCTTG------
i macFas5.chr8             C 0 C 0
s chlSab2.chr8              53242558 40 + 139301422 GAGAGAACAGGTG---TGGCAGAGAGAACGTCTGAGAAGCTTG------
i chlSab2.chr8             C 0 C 0
s monDom5.chr5               9605061 49 - 304825324 GAGAAAAGAGGGACCTTAGAACACAGAATGTTAGAGAAAAGAGGGATCT
i monDom5.chr5             I 3 C 0
e xenTro7.KB021656         140634015 15 - 142678541 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e taeGut2.chr1A             23692651 539 +  73657157 T
e nomLeu3.chr16             48101961 2303 + 100215132 T

a score=42765.000000
s hg38.chr8_KI270814v1_alt     34790 28 +    141812 CAGGATTCGC---AGGAGCA--------TCGGGAAAAGA
s panTro4.chr8              54975536 28 + 143986469 CAGGATTCGC---AGGAGCA--------TCGGGAAAAGA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59014693 31 + 153482349 CAGGATTCACAGAAGGAGAA--------TCGGGAGAAGA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48099658 31 + 100215132 CAGGATTCGCAGAAGGAGTA--------TTGGGAGAAGA
i nomLeu3.chr16            T 2303 C 0
s rheMac3.chr8              61643604 31 + 150158102 CATGATTCGCAGAAGGAGCA--------TCGGTAGAAGA
i rheMac3.chr8             C 0 C 0
s macFas5.chr8              58316638 31 + 146850525 CATGATTCGCAGAAGGAGCA--------TCGGTAGAAGA
i macFas5.chr8             C 0 C 0
s chlSab2.chr8              53242598 31 + 139301422 CACGATTCGCAGAAGGAGCA--------TCGGTAGAAGA
i chlSab2.chr8             C 0 C 0
s monDom5.chr5               9605110 26 - 304825324 -------------CAGAGCATGGAATGTTAGAGAAAAGA
i monDom5.chr5             C 0 I 3
e xenTro7.KB021656         140634015 15 - 142678541 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e taeGut2.chr1A             23692651 539 +  73657157 T

a score=23543.000000
s hg38.chr8_KI270814v1_alt     34818 14 +    141812 TTGCCTGCTTGCCC
s panTro4.chr8              54975564 14 + 143986469 TTGCCTATTTGCCC
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59014724 14 + 153482349 TTGCCTGTTTGCCT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48099689 14 + 100215132 TTGCCTGTTTGCCC
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8              61643635 14 + 150158102 CTGCCTGTTTGCCC
i rheMac3.chr8             C 0 C 0
s macFas5.chr8              58316669 14 + 146850525 CTGCCTGTTTGCCC
i macFas5.chr8             C 0 I 58515
s chlSab2.chr8              53242629 14 + 139301422 TTGCCTCTTTGCCC
i chlSab2.chr8             C 0 C 0
e xenTro7.KB021656         140634015 15 - 142678541 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5               9605136  3 - 304825324 I
e taeGut2.chr1A             23692651 539 +  73657157 T

a score=98956.000000
s hg38.chr8_KI270814v1_alt     34832 69 +    141812 GAAGGAATGGCAAGTTCCAAAGGTCAGAGGCTCGCGTGAACTCTGTCGGGTTCGAGAGCAGCTCAGTGT
s panTro4.chr8              54975578 69 + 143986469 GAAGGAATGGCAAGTTCCAAAGGTCAGAGGCTCGCGTGAACTCTGTCAGGTTCAGGAGCAGCTCAGTGT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59014738 67 + 153482349 GAAGGAATGGCAAGTTCCAAAGGTCAGAGGCTCGTGTGAA--CTGTCACGTTCAGGAGCAGCTCAGTTT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48099703 69 + 100215132 GAAGGAACTGCAAGTTCCAAAGGTCAGAGGCTCGCGTGAACTCTGTTGGGTTCAGGAACAGCTCAGTGT
i nomLeu3.chr16            C 0 T 290
s rheMac3.chr8              61643649 69 + 150158102 Aaaggaacgtcaagttccaaaggtcagaggctcgcgtgaactctgtcaggttcaggagcagctcagtgt
i rheMac3.chr8             C 0 C 0
s macFas5.chr8              58375198 69 + 146850525 GAAGGAATAGCAAATACAAAAGGGCAGACCCTTGAGTGAATTTTGTAGGGTTTATGTTAAATTCAATGT
i macFas5.chr8             I 58515 C 0
s chlSab2.chr8              53242643 69 + 139301422 AAAGGAACGTCAAGTTCCAAAAGTCAGAGGCTTGCGTGAACTCTGTCAGGTTCAGGAGCAGCTCAGTGT
i chlSab2.chr8             C 0 C 0
e xenTro7.KB021656         140634015 15 - 142678541 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5               9605136  3 - 304825324 I
e taeGut2.chr1A             23692651 539 +  73657157 T

a score=12588.000000
s hg38.chr8_KI270814v1_alt     34901 8 +    141812 TGCTGGTG
s panTro4.chr8              54975647 8 + 143986469 TGCTGCTG
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59014805 8 + 153482349 TGCTGGTG
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48099482 8 + 100215132 TGCTATTG
i nomLeu3.chr16            T 290 C 0
s rheMac3.chr8              61643718 8 + 150158102 tgctggtg
i rheMac3.chr8             C 0 C 0
s macFas5.chr8              58375267 8 + 146850525 TGCTAGTG
i macFas5.chr8             C 0 C 0
s chlSab2.chr8              53242712 8 + 139301422 TGCTGGTG
i chlSab2.chr8             C 0 C 0
e xenTro7.KB021656         140634015 15 - 142678541 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5               9605136 3 - 304825324 I
e taeGut2.chr1A             23692651 539 +  73657157 T

a score=-387.000000
s hg38.chr8_KI270814v1_alt     34909 1 +    141812 G
s panTro4.chr8              54975655 1 + 143986469 G
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59014813 1 + 153482349 G
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48099490 1 + 100215132 T
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8              61643726 1 + 150158102 c
i rheMac3.chr8             C 0 C 0
s macFas5.chr8              58375275 1 + 146850525 G
i macFas5.chr8             C 0 C 0
e xenTro7.KB021656         140634015 15 - 142678541 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5               9605136 3 - 304825324 I
e taeGut2.chr1A             23692651 539 +  73657157 T
e chlSab2.chr8              53242720 0 + 139301422 C

a score=65910.000000
s hg38.chr8_KI270814v1_alt     34910 50 +    141812 CAAG-AGTGTGGTACGGGAATGGTTGGGTGTGGTTTGAATGTCTAGAAAAG
s panTro4.chr8              54975656 50 + 143986469 CAAG-AGTGTGGTACGGGAATGGTTGGGTGTGGTTTGAATGTCTAGAAAAG
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59014814 50 + 153482349 CAAG-AGTGTGGTACAGGAGTGGTTGGGCATGGTTTGAATGTCTAGAAAAG
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48099491 50 + 100215132 AAAG-AGTGTGGTACTGACGTGGTTGGGCATGATTTGAATGTCTAGAAAAG
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8              61643727 49 + 150158102 -aag-agtgTGGTACAGAAGTGGTTGGGCGTGGTTTGAATGTCTAGAAAAG
i rheMac3.chr8             C 0 C 0
s macFas5.chr8              58375276 50 + 146850525 -AAATAGTGTGGTATGGGAGTTGTTGGAAACGAAGTGAATATCTTGATACG
i macFas5.chr8             C 0 C 0
s chlSab2.chr8              53242720 48 + 139301422 --CA-AGTGTGGTACAGAAGTGCTGGGGCGTGGTTTGAATGTCTAGAAAAG
i chlSab2.chr8             C 0 C 0
e xenTro7.KB021656         140634015 15 - 142678541 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5               9605136  3 - 304825324 I
e taeGut2.chr1A             23692651 539 +  73657157 T

a score=1500.000000
s hg38.chr8_KI270814v1_alt     34960 1 +    141812 G
s panTro4.chr8              54975706 1 + 143986469 G
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59014864 1 + 153482349 G
i ponAbe2.chr8             C 0 C 0
s rheMac3.chr8              61643776 1 + 150158102 G
i rheMac3.chr8             C 0 C 0
s macFas5.chr8              58375326 1 + 146850525 G
i macFas5.chr8             C 0 C 0
s chlSab2.chr8              53242768 1 + 139301422 G
i chlSab2.chr8             C 0 C 0
e xenTro7.KB021656         140634015 15 - 142678541 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5               9605136 3 - 304825324 I
e taeGut2.chr1A             23692651 539 +  73657157 T
e nomLeu3.chr16             48099541 0 + 100215132 C

a score=170118.000000
s hg38.chr8_KI270814v1_alt     34961 117 +    141812 CGAGCTGAGGGTAGATTTTTGAGCGGTCCAGAGCAGAAGGGGTAGAGGATATATTCTGTGGGCCACGGCCACATTCTCAGGATGCTCGTGGCTGTAAATAGTAGATGACCCAAGTAA
s panTro4.chr8              54975707 117 + 143986469 TGAGCTGAGGGTATATTTTTGAGCAGTCCAGAGCAGAAGGGGTAGAGGATGTATTCTGTGGGCCACAGCCACATTCTCAGGATGCTCGTGGCTGTAAATAGTAGATGACCCAAGTAA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59014865 117 + 153482349 CAAGCTGAGGGTAGATTTTTGAACAGTCCACAGCAGAAGGGGTAGAGGATATATTCTGTGGGCTATGGCCACATTCTTAGGATGCTCGTGGCTGTAAATAGTAGATGACCCAAGCAA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48099541 117 + 100215132 CGAGCTTAGGGAAGATTTTTGAGCAGTCCAGAGCAGGAGGGGTAGAGGATATATTTTGTGGGCCACGGCCACATTCTCAGGATGCTCGTGGCTTTAAATAGTAGATGACCCAAATAA
i nomLeu3.chr16            C 0 I 291
s rheMac3.chr8              61643777 117 + 150158102 TGAGCTGAGGGTAGATTTTTGAACAGTTCAGAGCAGGAGGGGTAGAGGATATATTTTGCGGGCCACGGCCACATTCTCAGGATGCTCTTGGCTGTAAATAGTAGATGACCCAAGTAA
i rheMac3.chr8             C 0 C 0
s macFas5.chr8              58375327 111 + 146850525 CAAGCTTAGGAAGGACTTTTGATTAGTATATA----AAGAAGTAGAT--CTTATTCAGTAGGCCATGGAGGAGTTCCCAGAATATATCTGGCTGTAAATACTAGATGACCTAACTAA
i macFas5.chr8             C 0 C 0
s chlSab2.chr8              53242769 117 + 139301422 CGAGCTGAGGGTAGATTTTTGAACAGTCCAGAGCAGGAGGGGTAGAGGATATATTTTGTGGGCCATGGCCACATTCTCAGGATGCTCTTGGCTATAAATAGTAGATGACCCAAGTAA
i chlSab2.chr8             C 0 C 0
e xenTro7.KB021656         140634015  15 - 142678541 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5               9605136   3 - 304825324 I
e taeGut2.chr1A             23692651 539 +  73657157 T

a score=464219.000000
s hg38.chr8_KI270814v1_alt     35078 344 +    141812 GAGCGGCTGAAGCCATAGGCACCAGAATTG---TGTCAG--------CATCGTCGTGTCATGCTCATGTTTTCCCTTCCAGCTGTGCTGTGGGCAGTGTTTAGTTCATGTCTGCTTTGCTGGCGGGCCGAGTAGC-----AACAGCTG-CAGTTGGTGTGTTCTCTGAAGGCAGTATCCGAAGGCTGGAGGGGTTGCTTTTCTTCCCAG-------------GTGTCTTTTGAAGAGGCAGTCAAGTCAGCAGCTCGCGGTGAACTTCTGGTAACATCGTATGGGCTGGGTTACAGcacatgccgactgctaagccggtcactggggaaaaccatgtgattgctgtgatgagcttagaatgatcattcctcctt
s panTro4.chr8              54975824 344 + 143986469 GAGTGGCTGAAGCCATAGGCACCAGAATTG---TGGCAG--------CATCGTCGTGTCATGCTCACGTTTTCCCTTCCAGCTGTGCTGTGGGCAGTGTTTAGTTCATGTCTGCTTTGCTGGCGGGCCGAGTAGC-----AACAGCTG-CAGTTGGTGTGTTCTCTGAAGGCAGTATCTGAAAGCTGGAGGGGTTGCTTTTCTTCCCAG-------------GTGTCTTTTGAAGAGGCAGTCAAGTCAGCAGCTCGCAGTGACCTTCTGGTAACATCGTAtgggctgggttacggcacatgctgactgctaagccggtcactggggaaaaccatgtgattgctgtgatgagcttagaatgatcattcctcctt
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59014982 344 + 153482349 GAGTGGCTGAAGCCGTAGGCAGCAGAATTG---TGTCAG--------CATCCTTGTGTCACGCTCACGTTTTCCCTTCCAGCCATTCTGTGGGCAGTGTTTAGTTCATGTCCGCTTTGCCGGTAGGCCGAGTAGC-----AACAGCTG-CAGTTGGTGTGTTCTCTGAAGGCAGTATCTGAAGGGTGGAGGGGTTGCTTTTCTTCCCAG-------------GTGTCTTTTGAAGAGGCAGTCAAGTCAGCAGTTCGCAGTGAGCTTCTGGTAATATCGTATGGACTGGGTTACAGcacattcccactgcgaagccagtcactggggaagaccatgtgattgctgtgatgagcttagaatgatcattcctcctt
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48099949 344 + 100215132 GAGTGGCTGAAGCCATACGCACCAGAGTTG---TGTCAG--------CATCGTCGTGTCACGCTCACGTTTTCCCTTCCAGCTGTGCTGTGGGCAGTGTTTAGTTCATGTCTGCTTTCCTGGCGGGCTGAGTAGC-----AACAGCTG-CAGTCAGTGTGTTCTCTGAAGGCAGTATCTGAAGGGTGGAGGGGTTGCTCTTATTCCCAG-------------GTGTCTTTTGAAGAGGCAGTCAAGTCAGCAGTTTGCAGTGACCTTCTGGTAACATCATATGGGCTGGGTTACAGCACAAGCCCACTGCTAAGCTGGTAACTGGGGAAGACCATGTGATTACTGTGATGAGCTTAGAATGATCATTCCTCCTT
i nomLeu3.chr16            I 291 C 0
s rheMac3.chr8              61643894 342 + 150158102 GAGCGGCTGAAGGCATAGGCACCAGAGCTG---TGTCGG--------CATCATCATGTTATGCTCACATTTTCCCTTCCAGC-GTGCTGTGGTCAGTGTTTAGTTCATATCTGCTTTCCCGGTGAGCCAAGTAGC-----AACAGCTA-TAGTTGGC-TGTAATCTGAAGGCAGTATCTGAAGGGTGAAGGGGTTGCTCTTCTTCCCAG-------------GTATCTTTTGAAGAGGCAGTCAAGTCAGCAGCTCGCAGTGACCTTCCAGTAACATCGTATGGGCTGGGTTACAGcacatgcccactgccaagccagtcactggggaaggccatgtgattgctgtgatgagcttagaatggtcattcctcctt
i rheMac3.chr8             C 0 C 0
s macFas5.chr8              58375438 313 + 146850525 CAACGGCTAAAACCATAGGCACCAAAGTTGTTCTGTTGGTTCAGGGATATCATAGTGTCACATGTATGTTTCCTTTTTCAGCTGTGCTCTTGGCAGTATTTTGTTAATGTCTCTTTTCATGGTTAGCTAAGTAGCCAATGAGTAGCCAGTCATTA---TGTTCTCTCAAGACAGTATCTGAAGGCTGGAAGGGTTTCTTTGTTTCATGATTTTTTGTTTGTTTTATTTTCAAAACAGGGAGCCAACTCAGAAGTTTGCA------------TAGGATCATA----------------------------------------------AGATCAATGTAATTCCTATGATTAGCTTAGAATAATCAtttcttttt
i macFas5.chr8             C 0 I 114
s chlSab2.chr8              53242886 342 + 139301422 GAGCAACTGAAGCCGTAGGCACCAGAGCTG---TGTTGG--------CATCATCATGTCATGCTCACATTTTCCCTTCCAGT-GTGCTGTGGTCAGTGTTTAGTTCATGTCTGCTTTCCCGGTGGGCCGAGTAGC-----AACAGCTG-TAGTTGGC-TGTTCTCTGAAGGCAGTATTTGAAGGATGAAGGGGTTGCTCTTCTTCCCAG-------------GTGTCTTTTGAAGAGGCAGTCAAGTCAGCAGCTCGCAGTGACCTTCTGGTAACATTGTATGGGCTGGGTTACAGcacatgcccactgctaagccagtcactggggaaggccatgtgattgctgtgatgagcttagaatggtcattcctcctt
i chlSab2.chr8             C 0 C 0
e xenTro7.KB021656         140634015  15 - 142678541 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5               9605136   3 - 304825324 I
e taeGut2.chr1A             23692651 539 +  73657157 T

a score=1288.000000
s hg38.chr8_KI270814v1_alt     35422 2 +    141812 cg
s panTro4.chr8              54976168 2 + 143986469 cg
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59015326 2 + 153482349 tg
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48100293 2 + 100215132 CA
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8              61644236 2 + 150158102 ca
i rheMac3.chr8             C 0 C 0
s chlSab2.chr8              53243228 2 + 139301422 cg
i chlSab2.chr8             C 0 C 0
e xenTro7.KB021656         140634015 15 - 142678541 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5               9605136 3 - 304825324 I
e taeGut2.chr1A             23692651 539 +  73657157 T
e macFas5.chr8              58375751 114 + 146850525 I

a score=895711.000000
s hg38.chr8_KI270814v1_alt     35424 615 +    141812 ggagctggggtgggTTGAGGGAGTGATAAAGATCACGATAACCTTGCATTTCTCCAGCGAGAAAGAAGAAAGAAATTCCGTGGATAGGGAGCCAGCCAGGTTTCCTGCAGAAAATCATGGGAAGCTTTTGAGCAGGGGAGTCAGAAGATGAGCGGTGAGTATTAGGGCTTTCCGGTCACGGTGTGACAcagggattggccagctcttcctgtaaagggccaggtgggaagcactcgtaggccccgtggtctctgtcgtgtctgctgaagcctgccgtagtagcgtggaagcagtcagagatgacgtgtaagcaaatggtcccgactgacctccggtaaagcattgattccggaagcaTTTAACAGACCTAACAACCTTTCAAACCGCATGGCGTTTCTTTCCCGGATCCCGTTTCAGGAACGTTTCTGTTGGC-TACAAGGACCGTCTCCAACATGCTTAGGCTCTGTGAACTTTCCCAGGAtcctgagtagggtat-ccgccattcgtccttagggctccgggatgtctcgttcttactgtgtccctgccaaccctggtcccatctcgtcatgatcacccactgcagaagagaggaggtgctagagtgaacagggt
s panTro4.chr8              54976170 616 + 143986469 ggagctggggtgggTTGAGGGAATGATAAAGATCCCGATAACCTTGCATTTCTCCAGCGAGAAAGAAGAAAGAAATTCCGTGGATAGGGAGCCAGCCAGGTTTCCTGCAGAAAATCATGGGAAGCTTTTGAGCAGGGGAGTCAGAAGATGAGCGGTGAGTATTAGGGCTTTCCGGTCACGGCGTGACAcagggattggccagctcttcctgtaaagggccaggtgggaaacactcgtaggccccgtggtctctgtcgtgtctgctgaagcctgccgtagtagcgtggaagcagtcagagatgacgtgtaagcaaatggtcccgactgacctccagtaaagcattgattccggaagcaTTTAACAGACATAACAACCTTTCAAACCGCATGGCGTTTCTTTCCCAGATCCCGTTTCAGGAATGTTTCTGGTGGCTTACAAGGACCGTCTCCAGCATGCTTAGGctctcttaactttcctaggatcctgagtagggtat-ccgccattcgtccttagggctccgggatgtctcgttcttaccgtgtccctgccaaccctggtcccatctcgtcatgatcacccactgtagaagacaggaggtgctagaatgaacagggt
i panTro4.chr8             C 0 T 5365
s ponAbe2.chr8              59015328 616 + 153482349 ggagctggggtgggTTGAGGGAACGATAAAGATCCCAATAACCTTGCATTTCTCCAGCGAGAAAGAAGAAAGAAATTCTGTGGATAGGGAGCTAGCCAGGTTTCCTGCAGAGAATCACGGGAAGCTTTTGAGCAGGGGAGTCAGAAGATGAGCGGTGAGTATTAGGGCTTTCCGATCATGGCGTGACAcacggattggccagctcttcctgtaaagggccaggtgggaaacactcgtaggccccgtggtctccgtcgtgtctgctgaagcctgctgtagtagcgtggaagcagtcagagatgacgtgtaagcaaatggtcccaactggcctccggtaaagcGTCGATTCCGgaagcatttaacagacctaacaacctttcaaaccacacagcgtttctttcccggatcccgtttcgggaatgtttctggtggcttacaaggaccgtctccaacatgcttaggctctcttaacttTGCCAGGAtcctgaatagggcat-ccaccattcgtccttagggctccgggatgtcttggtcttaccatctccctgccaaccctggtcccatctcgtcacgatcacccactggagaagagaggagatgctagagtgaacagggt
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48100295 616 + 100215132 GGAGCTGGGGTGGGTTGAGGGAACGATAAAGATCCTGACAACCTTGCGTTTCTCCAGAGAGAAAGAAGAAAGAAATTCCGTGGATAGGGAGCCAGCCAGGTTTCCTGCAGAGATTCACGGGAAGCTTTTGAGCAGGGGAGTCAGAAGATGAGTGGTGAGTATTAGGGCATTCCAGTCATGGCATGACGcagggtttggccagctcttcctgtaaagggccaggtgggaaatgcttgtaggccccgtggtcgcggtcatatctgctgaagcttgccgtagcagtgtggaagcagtctgagatgacacataagcaaatggtcctgactggcctctggtaaagcgtcaattccagaagcaTTGAATAGACCTAACAACCTTTCAAACTGCATGGCGTTTCTTTCCCGGGTCCTGCTTCAGGAATGTTTCTGGTGGCTTACAAGGACCGTGTCCAATGTGCTTGGGctctcttatctttcccaggatcctgaatagggcat-cccctattcatccttagggctctgggatgtctcggtcttactgtgtccctgccaatcccggtgccgtctcgtcactatcacccactggagaagagaggaggtgctggagtgaactggtt
i nomLeu3.chr16            C 0 I 1
s rheMac3.chr8              61644238 609 + 150158102 ggagctggggtgggTTGAGGGAACAATAAAGATCCTGATAACCCTGTGTTTCTCCAGTGAGGAAGAAGAAAG----GCTGTGGATAGGGAGCCAGCCAGGTTTCCTGTGGAGATTCACAGGAAGCTTTTAAGCAGGGGAGTCAGAAGATGAGCAGTGAGTATTAGGGCATTCCAGTCACGGCGTGATGCAGGGATTGTCCTGCTCTTCCTGTAAAGGGCCAGGTGGGAAACACTCGTAGGCCCCGTGGTGGCTGTCATGTCTGCTGAGGCTTCCCGTAGTAGCGTGGAAGCTGTCAGAGATGACGCTTAAGCAAATGGTCCTGACTGGCCTCTGGTAAAGCGTCAATTCTGGAAGGATTTAACAGACCTAACAACCTTTCAAGCTGCATGGCGTTTCTTTCCCATCTCCCGTTTTGGAAATGTTTCTGGCGGCTTACAAGGACTATCTCCAACGTGCTTGGTCTCTCTTAACTTTCCCAGGAtcctgaatcgggcat-ccactgttcatccttactgctctgggatgtctcggtcttaccatgtccctgccaatcctggtcccatctcatcacgatcacccact---gaagagaggaggtgctggagtgaacgtggt
i rheMac3.chr8             C 0 C 0
s macFas5.chr8              58375865 612 + 146850525 GGAACTGAGGTGGGATAATGGAATGATAAATATTCAAATAAATTTGTGTTTCTCCAGTGAGAAAGAAGAAAGAATAGTCATGGATAGGGAGCCAGTGAGGTTTTCTGCAGGGATTCATGCAAAGATTTTGGGTAGGGGGGCCCCAAGAGGAGGTGTGAGTATTAGGGCATTCTGGTTACGATATAAAGTagggattggcaagcttttcctgtaaagggccagatagcaaacatttctaggtcttgtagtctctgttgtatgttttcaaccctgttgttgcagtgtgaaaggagtcagaaataatatggaagcaaataggcacatttgtgctccagtaaagcttcctttCCtgaagcatttgatagacataacaacctttaaagttgtataacatttctttcctaaggttcctttcacaaagctttctcataactcacacagaccatctacaagatgcttgaactttcttaaatttcttatGAtcctgaatagggcatccccccattcatccttagtattctggagcaaatcgttcttactgtgtgtcc-ctaatcttggtcccatctcattacaattacccccttgagaacataaaacatactgaagtgaaca----
i macFas5.chr8             I 114 C 0
s chlSab2.chr8              53243230 609 + 139301422 ggagctggggtgggTTGAGGGAACAATAAAGATCCTGATAACCCTGCGTTTCTCCAGTGAGGAAGAAGAAAG----GCTGTGGATAGGGAGCCAGCCAGGTTTCCTGCGGAGATTCACAGGAAGCTTTTAAGCAGGGGAGTCAGAAGATGAGCAGTGAGTATTAGGGCGTTCCAATCACGGTGTGATGcagggattgtcctgctcttcctgtaaagggccaggtgggaaacactcataggccccgtggtggctgtcatgtctgctgaagcctcccgtagtagcgtggaagcagtcagagatgacgcttaagcaaatggtcctggctggcctctggtaaagcgtcaattctggaAGGATTTAACAGACCTAACAACCTTTCAAACTGCATGGCGTTTCTTTCCCATCTCCCGTTTTGGAAATGTTTCTGGCGGCTTACAAGGACTATCTCCAACGTGCTTGGTCTCTCTTAAGTTTCCCAGGAtcctgaatcgggcat-ccactgttcgtccttactgctctgggatgtctcggtcttaccatgtccctgccaaccctggtcccatctcatcacgatcacccact---gaagagaggaggtgctggagtgaacgtggt
i chlSab2.chr8             C 0 C 0
e xenTro7.KB021656         140634015  15 - 142678541 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5               9605136   3 - 304825324 I
e taeGut2.chr1A             23692651 539 +  73657157 T

a score=524913.000000
s hg38.chr8_KI270814v1_alt     36039 360 +    141812 caggggagccccgttcatccccagggtcccagaatgaaccagtgttaccatgtacccctgcccttgccttcctccctgctctaatggccgtgtgttagccggagatcagtttgggtctgggtgctatgggtctgttgcgcctgtggccttggtccggcctctgt-ccttgtctctgtgaaatgagagtgactgtgcctgagagcgttccagcaagacaatgatgatctccactgtctgattcccgcttcccaggttctcacagtagacgaggagcctgtttttcagctagctgccacaagggggctggaaatttctcccttcagagtggacctggaaggcttggaagcatctggagaaggg
s panTro4.chr8              54971421 360 + 143986469 caggggagccccgttcatccccagggtcccagaatgaagcagtgttaccatgtacccctgcccttgccttcctccctgctctaatggccgtgtgttagccagagatcagttttggtctgggtgctatgggtctgttgcgcctgtggccttggtccggcctctgt-ccttgtctctgtgaaatgagagtgactgtgcctgagagcattccagcaagacaatgatgatctccactgtctgattccggcttcccaggttctcacagtagacgaggagcctgtttttcagctagctgccgggaaggggctggaaatttctcccttcagagtggacctggaaggcttggaagcatctggagaaggg
i panTro4.chr8             T 5365 C 0
s ponAbe2.chr8              59015944 361 + 153482349 tgggggagccccgttcatccccggggtcccagaatgaaccagtgttaccatgtacccctgcccttgccttcctccctgctctattggccgtgtgttagcctgggatcagttttggtctgggtgctatgggtctgttgcgcctgtggccttggtccggcctctgtcccttgtctctgtgaaatgagagtgactgtgcctgagagcgttccagcaggacagtgatgatctccactgtctgattcccgcgtcccaggttctcacagtagacgagcatcctgtttttcagctagctgccgcaagggggctggacatttctcccttcagagtggacctggaaggcttggaagcatctggagaaggg
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48100912 360 + 100215132 ggggaaagccccgttcatccctggggtcccggaatgaaccagtgttaccatgtgcccctgcccttgccttcctccctgctctaacggccgcgtgttagcctgggatcagccttggtctgagtgctacgggtctgttgcgcctgcggccttggtccggcctctgt-ccttgtctctctgacgtgagagtgactgtgggtgagagcattccagcaagacaatgatgatctctgctgtctgattcccgcttcccaggttctcacagtagacgaggagcctgtttttcagctagctgccgcaagggggctggacatttctcccttcaaataggaccgggaaggcctggaagcatctggagaaggg
i nomLeu3.chr16            I 1 C 0
s rheMac3.chr8              61644847 360 + 150158102 tgggggagccccgttcatccccagggtcccagaatgaaccagtgttactgtgtacccctgatcttgccttcctccctgctctaacagccgtgtattagcctgggatcagctttggtcccagtgctattggtctgttgcgcctgcagccttggtccagcctctgt-ctttgtctccgtgacgtgagagtgactgtggctgagagcattccagcaagacaatgatgatctctgctgtctgattcccacttcccaggttctcacgatagatgaggagcctgtttttcagctagctgccgcaagggggctggacatttcacccttcagataggacctggaaggcctggaaacatctggagaaggg
i rheMac3.chr8             C 0 I 1629
s macFas5.chr8              58376477 313 + 146850525 -gaggatcccctgtttatccttggggttccagaatgaaccagttttactgtgtactgctaaccttgccttcatc------------------ttctagcctgggacca----------------------------atgccctcaatcttggcctggcctccat-ccatgtctccatgatcttagagtgactctcgctcagagcattctagcaggaaaatgatgatctctttactcaaattcccgtttgtcatcttctttaactagatgagaagcctgtttttcagctaagtgctgcaagggggtttgactttactccatttgaatttgaccttgaagaccttgatgcatattgagaaggg
i macFas5.chr8             C 0 C 0
s chlSab2.chr8              53243839 360 + 139301422 tgggggagccccgttcatccccagggtcccagaatgaaccagtgttactgtgtacccctggtcttgccttcctccctgctctaacagccgtgtattagcctgggatcagctttggtcccagtgctattggtctgttgcacctgcagccttggtccagcttctgt-ctttgtctccgtgacgtgagagtgactgtggctgagagcattccagcaagacaatgatgatctctgctgtctgattcccacttcccaggttctcacaatagatgaggagcctgtttttcagccagctgccgcaagggggctggacatttcacccttcagataggacctggaaggcctggaaacatctggagaaggg
i chlSab2.chr8             C 0 C 0
e xenTro7.KB021656         140634015  15 - 142678541 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5               9605136   3 - 304825324 I
e taeGut2.chr1A             23692651 539 +  73657157 T

a score=99752.000000
s hg38.chr8_KI270814v1_alt     36399 100 +    141812 catggccacgagtagagaaatccaggctacaggcagaagtgggaggaagcgagagaggaagactcatggaaagccttgctgcactcgccaaaagagctgc
s panTro4.chr8              54971781 100 + 143986469 cgtggccacgagtagagaaatcgaggctacaggcagaagtgggaggaagcgagagaggaagactcatggaaagccttgctgcactcgccaaaagagctgc
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59016305 100 + 153482349 cgtggccatgagtagagaaatcgaggctacaggcagaagtgggaggaagcgagagaggaagactcatggaaagccttgctgcgctcaccaaaagagctgc
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48101272 100 + 100215132 cgtggctgtcagtagagaaacagaggCTACAGGCTGAGGCAGGAGGAAGCGAGAGAGGAAGACTCACGGAAGACCTTGCTGCGCTGTGCAAAAGAGCCGC
i nomLeu3.chr16            C 0 I 1782
s macFas5.chr8              58376790 100 + 146850525 catagaagtgattagagaaatagaagctacaggaggaagtgggaggaagcgagtgaggaatactcatggaaagcctccctgtgctccccaaaacagccac
i macFas5.chr8             C 0 C 0
s chlSab2.chr8              53244199  98 + 139301422 cgtgactgtgagtagagaaaaggaCACTATTGGCGGAAGCGGGCGGAAGCAAGAGAGGAAGA--CACGGAAAGCCTTGCTGTGCTCTCCAAAAGAGCCGC
i chlSab2.chr8             C 0 C 0
e xenTro7.KB021656         140634015  15 - 142678541 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5               9605136   3 - 304825324 I
e taeGut2.chr1A             23692651 539 +  73657157 T
e rheMac3.chr8              61645207 1629 + 150158102 I

a score=2910.000000
s hg38.chr8_KI270814v1_alt     36499 3 +    141812 cct
s panTro4.chr8              54971881 3 + 143986469 cct
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59016405 3 + 153482349 cct
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8              58376890 3 + 146850525 cct
i macFas5.chr8             C 0 C 0
s chlSab2.chr8              53244297 3 + 139301422 CCT
i chlSab2.chr8             C 0 I 1519
e xenTro7.KB021656         140634015 15 - 142678541 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5               9605136 3 - 304825324 I
e taeGut2.chr1A             23692651 539 +  73657157 T
e nomLeu3.chr16             48101372 1782 + 100215132 I
e rheMac3.chr8              61645207 1629 + 150158102 I

a score=92719.000000
s hg38.chr8_KI270814v1_alt     36502 248 +    141812 cggactcaagagggccacgttca-atgtcaacctgacataaggtagtcacctctggagcacttgtggcctggggcaaaaacacagctggattgaaggaagagtcttccctgttcccagaggggcactg--actggaaatgagcatgaaggtggggtccctaaagggccacagaacgaggccctatgcaggtgtcggtacagactgccccaaaagccccctgagaagttggtcctggggtgtaagaggaaGG
s panTro4.chr8              54971884 248 + 143986469 cggactcaagagggccacgttca-atgccaacctgacataaggtagtcacctctggagcactcgtggcctggggcaaaaacacagccggattgaaggaagagtcttccctgttcccagaggggcactg--actggaaatgagcatgaaggtggggtccctaacgggccacagaacgaggtcctatgcaggggttggtacagactgccccaaaagccccctgagaagttggtcctggggcgtaagtggaaGG
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59016408 248 + 153482349 cggactcgagagggccacgttca-atgcctacctgacataaggtagtcacctttggagcacttgtggcctggagcaaaaacacggctggagtgaaggaagaatcttccctgttcccagaggggcactg--actggaaacaagcatgaaggtgggatccctaaagggccacagaaggaggccttatgcaggtgtcggtacagactgccccaaaagccccctgagaagttggtcctggggcgtaagaggaagg
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8              58376893 245 + 146850525 tgaatttgagagggccatatttatttgccctcttgacataaggtagtaacctccagaggatttgggccttagggtaaaaactcccaaaggttagaggaagaat-ttcccccctcccataggggtactatttccaaaaaaaagcaagtaggtagggttcttaaaaggccacagaatgaagctctatgcaggt----gaacaaatggcttcaaaagccactgaagaactgggccct-gagcataacagtaagg
i macFas5.chr8             C 0 T 57552
e xenTro7.KB021656         140634015  15 - 142678541 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5               9605136   3 - 304825324 I
e taeGut2.chr1A             23692651 539 +  73657157 T
e nomLeu3.chr16             48101372 1782 + 100215132 I
e rheMac3.chr8              61645207 1629 + 150158102 I
e chlSab2.chr8              53244300 1519 + 139301422 I

a score=22910.000000
s hg38.chr8_KI270814v1_alt     36750 91 +    141812 CACAGTGAagagcaggagtgaaagctgcttcagcactttggagcaggaaggaaaggaagtgagata-----cagttggaagagggcgaagcgggca
s panTro4.chr8              54972132 91 + 143986469 CACAGTGAagagcaggagtgaaaggtgcttcagcactttggagcaggaaggaaaggaagcgagatg-----cagttggaagagggcgaagcgggca
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59016656 96 + 153482349 cacggtgaagagcaggagtgaaagctgcttcagcactttggagcgggaagcaaaggaagtgagatgagatacagttggaagagggcgaagcaggca
i ponAbe2.chr8             C 0 C 0
e xenTro7.KB021656         140634015 15 - 142678541 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5               9605136  3 - 304825324 I
e taeGut2.chr1A             23692651 539 +  73657157 T
e nomLeu3.chr16             48101372 1782 + 100215132 I
e rheMac3.chr8              61645207 1629 + 150158102 I
e macFas5.chr8              58377138 57552 + 146850525 T
e chlSab2.chr8              53244300 1519 + 139301422 I

a score=1746.000000
s hg38.chr8_KI270814v1_alt     36841 3 +    141812 acc
s panTro4.chr8              54972223 3 + 143986469 acc
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59016752 3 + 153482349 acc
i ponAbe2.chr8             C 0 I 355
s macFas5.chr8              58319586 3 + 146850525 acc
i macFas5.chr8             T 57552 C 0
e xenTro7.KB021656         140634015 15 - 142678541 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5               9605136 3 - 304825324 I
e taeGut2.chr1A             23692651 539 +  73657157 T
e nomLeu3.chr16             48101372 1782 + 100215132 I
e rheMac3.chr8              61645207 1629 + 150158102 I
e chlSab2.chr8              53244300 1519 + 139301422 I

a score=113684.000000
s hg38.chr8_KI270814v1_alt     36844 299 +    141812 tgagggatggagtgcagggtttgaccttcgattctggatctcctccattagcaggcttccggggtggcgttgttgcctctctgccgatccttccttcgggtggggctgtcgactggcaccacggcctgtcagaccgtgggcggggggcgttgcaggcacagtgcggttcctag--tcttaggcatgctcacttgaggcgttcttcccctacctgtcgactgatctcagaggaaggagactgagctgctcagccctgccggtgtggctggcagggtgtcccgcattagcccatgtgcccgac
s panTro4.chr8              54972226 301 + 143986469 tgagggatggagtgcagggtttgaccttcgattctggatctcctccattagcaggcttccggggtggcgttgttgcctctctgccgatccttcctttgggtggggctgccgactggcaccacggcctgtcagaccgtgggcggggggcgttgcaggcacagtgtggttcctagagtcttaggcatgctcacttgaggcgttcttcccctacccgtcgactgatctcggaggaaagagactgagctgctcaagcctgccggtgtggctgtcagggtgtcccgcgttagcccatgtgcccgac
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59017110 298 + 153482349 tgagggatggagtgcagggtt--gacttcgattctgggtctcctctgttagcaggcttctggggtggcgttgttgcctctccgccgatccttcctttgggtggggctgttgactggtgccacggcctgtcagaccgtgggctgggggcattgcaggcacagtgtggttcctagagtcttaggtgtgctcacttgaggcattcttcccctgcccattgactgatctcagaggaaggagactgagctgctca-ccccgccagtgtggctgtcagggtgtcctgcattagcccacgtgcccgac
i ponAbe2.chr8             I 355 C 0
s macFas5.chr8              58319589 282 + 146850525 tgagttaacaagtgcagggtt-------tgactcaaggtgtcatttgttggcaggctttcagggtggtgtttttgcctctcccctgatccttccttcgggtgggtctgtccactggtgccgcagcctgtcagcccatgggttttgggtgtcacatgagcagtgcagttcctagagtcttaggctt-----------gtgcccttttcttacccattgagtgttctcacaggaagggtatggagctgctaaacccaaccgttctggctgtta-ggtgtcctgcatgagcccacgcacatgat
i macFas5.chr8             C 0 C 0
e xenTro7.KB021656         140634015  15 - 142678541 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5               9605136   3 - 304825324 I
e taeGut2.chr1A             23692651 539 +  73657157 T
e nomLeu3.chr16             48101372 1782 + 100215132 I
e rheMac3.chr8              61645207 1629 + 150158102 I
e chlSab2.chr8              53244300 1519 + 139301422 I

a score=207232.000000
s hg38.chr8_KI270814v1_alt     37143 194 +    141812 tcctgggatcttacagggaggctgctgatgtccaccttccagtgcttccgtccgttgggagcctgcccttccttggcgccggccggccgtgagcggttatcctccatagatagggttcaagaaccgcccaaccgtcacctcatggtcatctgacattcctggtggtggtagggggaccccctggttccatgctc
s panTro4.chr8              54972527 194 + 143986469 tcctgggatctgacagggaggctgctgatgtccaccttccagtgcttccgtccattgggagcctgcccttccttggtgccggccggccgtgagcggttatcctccatacatagggttcaagaaccgcccaaccgtcacctcgtggtcacctgacattcctggtggtggtagggggcccccctggttccatgctc
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59017408 193 + 153482349 tcctgggatcttacagggaggctgctgatgtccaccttcctgcacttccgtccattgggagcctgcccttccttggcgccggccagccgtgagcagttatcctccacagatagggttcaagaaccgcccaaccatcacctcatggtcatctgacattcctggtggtgat-gggggaccccctggtaccatgctc
i ponAbe2.chr8             C 0 C 0
s rheMac3.chr8              61646836 194 + 150158102 tcctgggattttaccaggaagctgctgatgtccaccttccagctcttttgtcctttgggaggctgcccttttttggcactggcaggctgcgaacggttttcctccaaagaaacgtttcaacaactgcctgaccatcatctactggttgtctgacatttctggtggtggtgggggaaacccctcataccctgctc
i rheMac3.chr8             I 1629 C 0
s macFas5.chr8              58319871 194 + 146850525 tcctgggattttaccgggaagctgctgatgtccaccttccagctcttttgtcctttgggaggctgcccttttttggcactggcaggctgcgaacggttttcctccaaagaaacgtttcaacaactgcctgaccatcatctactggttgtctgacatttctggtggtggtgggggaaacccctcataccctgctc
i macFas5.chr8             C 0 C 0
s chlSab2.chr8              53245819 194 + 139301422 tcctgggattttaccagaaagctgctgatgtccagcttccagctcttttgtcctttgggaggctgcccttttttggcactggcaggctgcgaacggttttcctccaaagaaacgtttcaacaactgcctgaccatcatctactggttgtctgacatttctggtggtggtgggggaagcccctcataccctgctc
i chlSab2.chr8             I 1519 C 0
e xenTro7.KB021656         140634015  15 - 142678541 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5               9605136   3 - 304825324 I
e taeGut2.chr1A             23692651 539 +  73657157 T
e nomLeu3.chr16             48101372 1782 + 100215132 I

a score=57012.000000
s hg38.chr8_KI270814v1_alt     37337 49 +    141812 acatcagaccagctacctCGAGTGACAGGAACG-TCTGACAGGATTGCAC
s panTro4.chr8              54972721 49 + 143986469 acatcagaccagctacctCGAGTGGCAGGAACG-TCTGACAGGATTGCAA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59017601 49 + 153482349 acgtcagaccagctacctCGAGTGACAAGAACG-TCTGACAGGATTGCAC
i ponAbe2.chr8             C 0 C 0
s rheMac3.chr8              61647030 49 + 150158102 atgtcagtccagctacctGGAGTGACTGGAATG-TCTGACAGGATTGCAC
i rheMac3.chr8             C 0 C 0
s macFas5.chr8              58320065 49 + 146850525 atgtcagtccagctacctGGAGTGACTGGAATG-TCTGACAGGATTGCAC
i macFas5.chr8             C 0 C 0
s chlSab2.chr8              53246013 49 + 139301422 atgtcagtccagctacctGGAGTGACTGGAATG-TCTGACAGGATTGCAC
i chlSab2.chr8             C 0 C 0
s monDom5.chr5               9605139 50 - 304825324 ACCTTAGAACACGGAATGTTAGAGAAAAGAGGGATCTCAGAGCATGGAAT
i monDom5.chr5             I 3 T 563
e xenTro7.KB021656         140634015 15 - 142678541 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e taeGut2.chr1A             23692651 539 +  73657157 T
e nomLeu3.chr16             48101372 1782 + 100215132 I

a score=4506.000000
s hg38.chr8_KI270814v1_alt     37386 4 +    141812 ATGT
s panTro4.chr8              54972770 4 + 143986469 ATGT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59017650 4 + 153482349 GTGT
i ponAbe2.chr8             C 0 C 0
s rheMac3.chr8              61647079 4 + 150158102 ATTT
i rheMac3.chr8             C 0 C 0
s macFas5.chr8              58320114 4 + 146850525 ATTT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8              53246062 4 + 139301422 ATTT
i chlSab2.chr8             C 0 C 0
s monDom5.chr5               9604626 4 - 304825324 ATGT
i monDom5.chr5             T 563 C 0
e xenTro7.KB021656         140634015 15 - 142678541 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e taeGut2.chr1A             23692651 539 +  73657157 T
e nomLeu3.chr16             48101372 1782 + 100215132 I

a score=29526.000000
s hg38.chr8_KI270814v1_alt     37390 28 +    141812 GGCAGAAGAGC---ATCCGAGAAGGATGAAG
s panTro4.chr8              54972774 28 + 143986469 GGCAGAAGAGC---ATCCGAGAAGGATGAAG
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59017654 28 + 153482349 GGCAGAAGAGC---ATCAGAGAAGGATGAAG
i ponAbe2.chr8             C 0 C 0
s rheMac3.chr8              61647083 28 + 150158102 GGCAGAAGAAC---ATCTGAGACGATTCAGT
i rheMac3.chr8             C 0 C 0
s macFas5.chr8              58320118 28 + 146850525 GGCAGAAGAAC---ATCTGAGACAATTCAGT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8              53246066 28 + 139301422 GGCAGAAGAAT---ATCTGAGACGATTCAGT
i chlSab2.chr8             C 0 C 0
s monDom5.chr5               9604630 31 - 304825324 TAGAGAAAAGAGGGATCTTAGAACATGGAAT
i monDom5.chr5             C 0 C 0
s xenTro7.KB021656         140634030 28 - 142678541 GCCAGGGGAGC---ATAGGAGGAGGACCAGG
i xenTro7.KB021656         I 15 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e taeGut2.chr1A             23692651 539 +  73657157 T
e nomLeu3.chr16             48101372 1782 + 100215132 I

a score=200993.000000
s hg38.chr8_KI270814v1_alt     37418 146 +    141812 GTTTGGCAGAAGAAACACCTGCCAGATCAGACGT-GAATGTGTGGCAGAAAGCCCATCTGGGAAGATTGCACACTGGGCAGAAGGAAGAGCTAAGAACGTTGTACAGACAGCGGAAGGAGTG-CCTGTGGAGATTGCCCGGTGGGCGG
s panTro4.chr8              54972802 146 + 143986469 GTTTGGCAGGAGAAACACCTACCAGATCAGATGT-GAATGTGTGGCAGAAGGCCCATCTGGGAAGATTGCACACTGGGCAGAAGGAAGAGCTAAGAACGTTGTACAGACAGCAGAAGGAGTG-CCTCTGGAGATTGCCCGGTGGGCGG
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59017682 146 + 153482349 GTTTGTCAGAAGAAACACCTGCCAGATCAGATGT-GAATGTGTGGCAGAAGGCCCATCTGGGAAGATTGCACACTGGGCAGAAGGAAGAGCTAAGAATGTTGGATGGACAGCAGAAGGAGTG-CCTCCGGAGATTGCCCGGTGGGCGG
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48103154 141 + 100215132 GTTTGGCAGAAGAAACCTCTG-----TCAGATGT-GAACGTGTGACAGAAGGACCATCCGGGAAGATTGCACACTGGGCAGAAAGAAGACTTAAGAACATTGCATGGACAGCAGAAGGAGTG-CTTCGGGAGATTGCCTGGTGGGCAG
i nomLeu3.chr16            I 1782 C 0
s rheMac3.chr8              61647111 125 + 150158102 GTTTGG---------------------CAGACAT-GAACATACGACAGAAGGGCCATCCAGGAAGACTGCACACTGGGCAGAAGGAAGACTTAAGAACATTGCATGGACAGCAGAAGGAGTG-CTTCAGGAGATTGCCTGGTGGGCGG
i rheMac3.chr8             C 0 T 1931
s macFas5.chr8              58320146 125 + 146850525 GTTTGG---------------------CAGACAT-GAACATACAACAGAAGGGCCATCCAGGAAGACTGCACACTGGGCAGAAGGAAGACTTAAGAACATTGCATGGACAGCAGAAGGAGTG-CTTCAGGAGATTGCCTGGTGGGCGG
i macFas5.chr8             C 0 C 0
s chlSab2.chr8              53246094 125 + 139301422 GTTTGG---------------------CAGACAT-GAACATACGACAGAAGGGCCATCCAGGAAGACTGCACACTGGGCAGAAGGAAGACTTAAGAACATTGCATGGACAGCAGAAGGAGTG-CTTCAGGAGATTGCCTGGTGGGCGG
i chlSab2.chr8             C 0 T 1911
s monDom5.chr5               9604661 141 - 304825324 GTTAGCGAAAAGAGGGACCTT------AGAACATAGAATGTTAGAGAAAAGAGGGATCTTAGAACATGGAATGTTAGCGAAAAGAGGGACCTTAGAACATGGAAT-GTTAGCGAAAAGAGGGACCTTAGAACATGGAATGTTAGAGAA
i monDom5.chr5             C 0 C 0
s xenTro7.KB021656         140634058 132 - 142678541 GGAGGATAGGAGGTGGGC---------CAGGGGA-GGATA---GGAGGAAAGGCCAG--GGGAGGATAGGAGACAGGCCAGGGGAGGATAGGAGGAAAGGCCAGGGGAGCATAGGAGGAGGA-CCAGGGGAGGATAGGAGGTGGGCCA
i xenTro7.KB021656         C 0 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e taeGut2.chr1A             23692651 539 +  73657157 T

a score=14687.000000
s hg38.chr8_KI270814v1_alt     37564 18 +    141812 TGGTAGCATCTGAGAGGA
s panTro4.chr8              54972948 18 + 143986469 TGGTAGCATCTGAGAGGA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59017828 18 + 153482349 CGGTAGCATCTGAGAGGA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48103295 18 + 100215132 CGGGAACACCTGAGATGA
i nomLeu3.chr16            C 0 C 0
s macFas5.chr8              58320271 18 + 146850525 CAGGAACACCTGAGAGGA
i macFas5.chr8             C 0 I 62779
s monDom5.chr5               9604802 18 - 304825324 AAGAGGGATCTCAGAGCA
i monDom5.chr5             C 0 C 0
s xenTro7.KB021656         140634190 18 - 142678541 GGGGAGGATAGGAGGTGG
i xenTro7.KB021656         C 0 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e taeGut2.chr1A             23692651 539 +  73657157 T
e rheMac3.chr8              61647236 1931 + 150158102 T
e chlSab2.chr8              53246219 1911 + 139301422 T

a score=-2953.000000
s hg38.chr8_KI270814v1_alt     37582 2 +    141812 -TT
s panTro4.chr8              54972966 2 + 143986469 -TT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59017846 2 + 153482349 -TT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48103313 2 + 100215132 -CT
i nomLeu3.chr16            C 0 T 1943
s monDom5.chr5               9604820 1 - 304825324 --T
i monDom5.chr5             C 0 I 1
s xenTro7.KB021656         140634208 2 - 142678541 GC-
i xenTro7.KB021656         C 0 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e taeGut2.chr1A             23692651 539 +  73657157 T
e rheMac3.chr8              61647236 1931 + 150158102 T
e macFas5.chr8              58320289 62779 + 146850525 I
e chlSab2.chr8              53246219 1911 + 139301422 T

a score=12502.000000
s hg38.chr8_KI270814v1_alt     37584 46 +    141812 GCGGGGTGGGAGGGAGGATGAGCTGGGAAGGATGCAA----------------GGCCTGGGG
s panTro4.chr8              54972968 46 + 143986469 GCGGGGTGGGAGGGAGGATGAGCTGGGAAGGATGCAA----------------AGCCTGGGG
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59017848 46 + 153482349 GCGGTGTGGGAGGGAGGACAAGCTGGGAAGGATGCAA----------------GGCCTGGGG
i ponAbe2.chr8             C 0 C 0
s monDom5.chr5               9604822 61 - 304825324 -GAATGTTAGAGAAAAGAGGGACCTTAGAACATGGAATGTTAGAGAAAAGAGGGATCTTAGA
i monDom5.chr5             I 1 C 0
s xenTro7.KB021656         140634210 49 - 142678541 CAGGGGAGGATAGGAGGCGGACCAGGGGAGGATAGGATAT-------------GGGCTGGGG
i xenTro7.KB021656         C 0 N 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221193           9789397 565 +  32995986 T
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e taeGut2.chr1A             23692651 539 +  73657157 T
e nomLeu3.chr16             48103315 1943 + 100215132 T
e rheMac3.chr8              61647236 1931 + 150158102 T
e macFas5.chr8              58320289 62779 + 146850525 I
e chlSab2.chr8              53246219 1911 + 139301422 T

a score=2051.000000
s hg38.chr8_KI270814v1_alt    37630 17 +    141812 AGGCAACATGT------GAAGAC-----------
s panTro4.chr8             54973014 17 + 143986469 AGGCAACATGT------GAAGAC-----------
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59017894 17 + 153482349 AGGCAAAATGT------GAAGAC-----------
i ponAbe2.chr8             C 0 C 0
s monDom5.chr5              9604883 34 - 304825324 ACACGGAATGTTAGAGAAAAGAGGGATCTTAGAA
i monDom5.chr5             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e nomLeu3.chr16            48103315 1943 + 100215132 T
e rheMac3.chr8             61647236 1931 + 150158102 T
e macFas5.chr8             58320289 62779 + 146850525 I
e chlSab2.chr8             53246219 1911 + 139301422 T

a score=82311.000000
s hg38.chr8_KI270814v1_alt    37647 249 +    141812 GATTAAATATGTGGCAGGAGAAACACCTGAGAAGATGGGATGCTTGGCAAGGGGAACAAGGCCCGGAATGGAGTGTTCGGGAG-AAGAGACGCTTAGGGAGATTGCATGTGTGGCAGAAGGAACACGTGAGAAGGTTGCCATGGTGGACAGCAGAAAAATTGCAGCCGATGGCACAGCGGTGGGGAGGAAAACATAGGAAGCTTGCAAGCGCGTGGCCTGC-----GAAAGAAGCATCTGA------------------AGAgatggcatg---------------tc
s panTro4.chr8             54973031 249 + 143986469 GATTAAATATGTGGCAGGAGAAACACCTGAGAAGATGGGATGCTTGGCAAGGGGAACAAGGCACAGAGCGGAGTGTTGGGGAG-AAGAGACGCTTAGGAAGATTGCATGTGTGGCAGAAGGAACATGTGAGAAGGTTGCCGTGTTGGACAGCAGAAAAATTGCAGCCGATGGCACAGCGGTGGGGAGGAAAACATAGGAAGCTTGCAAGTGCGTGGCCTGT-----GAAAGAAGCATCTGA------------------AGAGATGGCATG---------------TC
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59017911 249 + 153482349 GATTAAATATGTGGCAGGAGAAACACCTGAGAAGATGGGATGCTTCGCAAGGGGAACAAGGCACAGAGTGGAGTGTTTGGGAG-AAGAGACGCTTAGGGAGATTGCATGTGTGGCAGAAGGAACATGTGAGAAAGTTGCCATGGTGGACAGCAGAAAAATTGCAGCCGATGGCACAGTGGCAGGGAGGAAAACATAGGAAGCTTGCAAGTGCGTGGCCTGC-----AAAAGAAACATCTGA------------------AGAGACGGCATG---------------TC
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8             58383068 251 + 146850525 GATTGAATGTTTGTCAGAAAGAACACTTGACAAGAGTAATTTTTTGACAAAAGAAACATCTGACAATATTGAATGGTTGAGAGAAAAAAACATCTGAGAAGTGTCATTGTTTGGCAGAAGGAGTATAT--------------------------ATATATCTTAGAAGATTGCATGGTTAACAGAAGGAAGACCTAGGAA------AATAGCATGGCCTAC-----AAAAGAAACATCTGAATAGAATGATGACTTAGGAGAAAAAGCATGTGATAGGATTAAATATT
i macFas5.chr8             I 62779 C 0
s monDom5.chr5              9604917 242 - 304825324 CATAGAATGTTAGAGAAAAGAGGGATCTTAGAACATGGAATGTTAGCGAAAAGAGGGATCTCAGAGCATGGAATGTTAGAGAA-AAGAGGGACCTTAGAACATGGAATGTTAGAGAAAAGAGGGACCTTAGAACATAG-AATGTTAGAGAAAAGAGGGACCTTAGAACACAGAATGTTAGAGAAAAGAGGGATCT-----------CAGAGCATGGAATGTTAGAGAAAAGAGGGACCTTA------------------GAACACGGAATG---------------TT
i monDom5.chr5             C 0 I 561
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e nomLeu3.chr16            48103315 1943 + 100215132 T
e rheMac3.chr8             61647236 1931 + 150158102 T
e chlSab2.chr8             53246219 1911 + 139301422 T

a score=4079.000000
s hg38.chr8_KI270814v1_alt    37896 10 +    141812 tggcagagga----
s panTro4.chr8             54973280 10 + 143986469 TGGCAGAGGA----
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59018160 10 + 153482349 TGGCAGAGGA----
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8             58383319 10 + 146850525 TTGCAGAGAA----
i macFas5.chr8             C 0 C 0
s monDom5.chr5              9605720 10 - 304825324 ----AGAGAAAAGA
i monDom5.chr5             I 561 I 3
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e nomLeu3.chr16            48103315 1943 + 100215132 T
e rheMac3.chr8             61647236 1931 + 150158102 T
e chlSab2.chr8             53246219 1911 + 139301422 T

a score=320493.000000
s hg38.chr8_KI270814v1_alt    37906 1041 +    141812 cacattgggcaagattccacgtttggcagcAGGCCCGTGagcggcgacagacgcgtatgggcctgtggcaacctcggttcctgcctcctgagaagaaagacatcgagtg----gcacacggtagagtgagagaccgaggcacgcattagagcaggggcgaaagttcctgaaatggtatcgtggcaggagccaaaggaagtcaaggaggcttggaagaggcccaggtgggcggtgacctgagaggt-ggagtacaggactggaccttggactcagggtctcccgcgtcggca-------------gcatcgctgcctgtcctctgatgcttccctcggcggggaagaggggactgttcactagcacagtggcctgtcaccatctcatgggggcgcggaggcgccgtgtgcttactggagttgttctcatgctctcttgaggcgttcctcccacaagcagatgaatgtgcccaggggaaaacatcccagatcagtgaaccttccaccagtttgcctctcagggtgcacgtgtgagcccattcacccaactcccgaggtgtgctgggga--------------ggcttctgaggttcgtgactgctgtgggggagggggactgcctttccctggtgctgcctgtgatcagtgatttctctagagagtctgcttcgtgaccaccgggccatcaccttgcggctgcctgatgtttactggtggtggggaaccctctcgggccccgctcCACACGTGTGACTGAGAGGGACACCTGACAGGATTGAACGCGTGGCAGATCATCCGACGAGATGGAGTGTCTGGTGGAAGGAACATCTGACAGCCCTGAGCGTGTGGCAGAGGGAACATCTAAGCAGACTGCAGCGAT-TTCAGAAGGAACGGCTAAGAACATCGCATGGTCAGCAGGAGGAAACCTTAGGGTAGGGTGATTGCAGGGGTGCTGGGGGGCAAGGGAACCCGTGAGAAGACTGCGGGATCAGCAGTTGGATGCCCTAGGGAGATTGCAAGGCCTGCCCAAGAGACATCTGGGTAGAGGAAGTATTGGGCCCATGGTGCGCCA
s panTro4.chr8             54973290 1040 + 143986469 CACGTTGGGCAAGATTCCACGTTTGGCAGCACACCCGTGAGcggcggcatacgcgtatgggcctgtggtaac-tcagttcctgcctcctgagaagaaagacatcgagtg----gcacacggtagagtgagagaccgaggcacgcattagagcaggggtgaaagttcctgaaatggtatcgtggcaggagccaaaggaagtcaaggaggcttggaagaggcccaggtgggcggtgacctgagaggt-ggagtacaggactggaccttggactcagggtctctcgtgtcggca-------------gcatcactgcctgtcctctgatgcttcccttggcggggaagagggggctgttcgctagcacagtggcctgtcaccacctcctgggggcacggaggcgccgtgtgcttactggagttgttctcgtgctctcttgaggctttcctcccccaagcagacgaatgtgcccaggggaaaacatcctagatgagtgaaccttccgccagtttgcgtctcagggcgcatgtgtgagcccattcacccaactcccgaggtgtgctgggga--------------ggcttctgaggttcgtgactgctgtgggggagggggactgcctttccctggcgctgcctgtgatcagtgatttctctagagagtctgcttcgtgaccaccgggccgtcaccttgcggctgcctgatgtttactggtggtggggaaccctctcgggccccgctcCACACATGTGACTGAGAGGGACACCTGACAGGATTGAACGCGTGGCAGATCATCCGACGAGATGGAGTGTCTGGTGGAAGGAACATCTGACAGCCCTGAGCGTGTGGCAGAGGGAACATCTAAGCAGACTGCAGCGAT-TTCAGAAGGAACGGCTAAGAATGTCGCATGGTCAGCAGGAGGAAACCGTAGGGTAGGGTGATTGCAGGGGGGCTGGGGGGCAAGGGAACCCGTGAGAAGACTGCAGGATCAGCAGTTGGATGCCCTAGGGAGATTGCAAGGCCTGCCCAAGAGACATCTGGGTAGAGGAAGTACTGGGCCCATGGTGCGCCA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59018170 1040 + 153482349 CACATTGGGCAAGATT-TGCATTTGGCAGCGGGCCTGTGAGcggcggcagaggcatatgggcctgcggcaacctcagttcctgcctcctgagaagaaagacattgagtg----gcacacggtagagtgatagactgaggcacgcatgagagcaggggcgaaagttcctgaaacggtattgtggcaggagccaaaggaagtcaaggaggcttggaagaggcccaggtgggcggcgacttgagaggt-ggagtgcaggactggaccttggactccgggtctcccgcgttggca-------------gcatcgctgcctgtcccctgatgcttcccttggtggggaagagggggctgttcactggcacagtggcctgtcacaacctcgtgtgggggcggaggcgctgtgtgcttactggagttgtttgcatgctctcttgaggcattcctcccacaagcagacgaatgtgcccaggggaaaacatcctagatcagtgaacctcccgccagtttgcctctcagggcgcatgtgtgagcccatttacccaactcccaaggtgtgctgggga--------------ggcttctgaccttcgtgactgctgtggaggagggggactgcctgtccctggcgctgcctgtgatcagtgatttttctagcgagtctgcttcgtgaccaccgggccatcaccttgcggctgcatgatgtttaccggtggtggggaaccctctcgggccccgctcCACACGTGTGACTGAGAGGGACACCTGACAGGATTGAACGCGTGGCAGATCATCCGACGAGATGGAGTGTCTGGTGGAAGGAACATCTGACAGCCCTGAGCGTGTGGCAGAGGGAACATCTAAGCAGACTGCAGCGAT-TTCAGAAGGAACGACTAAGAACATCGCATGGTCAGCAGGAGGAAACCTTAGGGTAGGGAGATTGCAGGGGAGCTGGGGGACAAGGGAACCCGTGAGAAGACTGCGGGATCAGCAGTTGGATGCCCTAGGGAGATTGCAAGGCCTGCCTAAGAGACATCTGGGTAGAGGAAGTATTGGGCCCATGGTGCACCA
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8             58383329  923 + 146850525 AACACTAGAAAAGACTGAATGCTTGGAAGTAGAAATTTCAGTGTCTGTGGATG-GAAAaggtctgccctaacctaaaatcttgccttattagaagaaagaattcaactgtggagcatagagcagagtgagagacactgacaagttttagagcaggagtgaaagtttattaaaaagtattaaagagggaatgaaaggaagcaaagtacacttggaagaggcccaagcatgc---aacctgagagatccaagtgcacagtttgacccttgacatgggtttttataggttggtagactttgggggatgcattac------ttctctgattcttccctt--------agaggaggct-ctcacatgtgcagtggcctgtcagc-tcttggaaggagccacgtgtgcagagtctttattagagatatacgcacgctaacttgaggcattccacttttac-ctggtggattttttctgag--aatggtcatataccagttaaact-ctgccattttgcctcttactgtgcatgcatgagcccattagcccagctcttgaaatcttatcaggaagtcactgatcactagcttcagatgtttccctttact--------gggagtctgccttttactggtg------gtgaccaatgattattttagagag--------------acctgaccatcacttcatggttgcctgacattc-ctagtgagaagaggccctctc-tgccctgct---aatgtctgact-----agctacctactgtaataGAAA-----------CATTGGCCAAGATTGAATGTTTGGTAGAAGAAACATCTGACAAGATTAAATATTTGACCAAAGAAACA-CTGGACAAGATTCAATATTGGTTAGAAGAAACATTGGACAAGATTGAATGTTT---------------------------------------------GGCAAGAAAAACAG--------------------------------CTGACAAGATTGGATGTTTGGTCTAAAAGACATCTGACAAGATTGAATGCTGGGGCAAAGAAACATCT
i macFas5.chr8             C 0 T 5658
e ornAna1.Ultra479          3871811  995 -   6008416 T
e tetNig2.chr13             4300044  851 -  13302670 T
e punNye1.JH419232          4767720  338 +   5065651 T
e mayZeb1.JH720588          2493684  338 +   2778784 T
e hapBur1.JH425411          1657068  338 +   1983257 T
e neoBri1.JH422276          4185134  338 -  16571924 T
e araMac1.KE026486             3582  666 -     24340 T
e astMex1.KB882082          3904961  703 -   8876373 T
e takFla1.KE120500           511214  428 +    663757 T
e fr3.chr9                  3741472  428 -  13922460 T
e ficAlb2.chr1A            24321356  629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397  565 +  32995986 T
e zonAlb1.KB913045         12582078  625 +  16390125 T
e colLiv1.KB375358          1019695  647 +   1462937 T
e allMis1.JH737798            79979  829 +    106177 T
e falPer1.KB391107          2216113  646 -   3101084 T
e falChe1.KB398074          4263496  646 -   7151304 T
e macEug2.GL108065            83888  651 -    187545 T
e galGal4.chr1             24067632  655 + 195276750 T
e geoFor1.JH739914          5157808  631 -   7168866 T
e melGal1.chr1             24929366  674 + 204065131 T
e anaPla1.KB743807             6030  614 +     81650 T
e amaVit1.KB277496             7479  640 -     10329 T
e apaSpi1.KB929668          5961518  314 -  12308914 T
e cheMyd1.KB478633          2433661  653 +   6037886 T
e chrPic2.chr2             18523590  672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730    3 - 304825324 I
e taeGut2.chr1A            23692651  539 +  73657157 T
e nomLeu3.chr16            48103315 1943 + 100215132 T
e rheMac3.chr8             61647236 1931 + 150158102 T
e chlSab2.chr8             53246219 1911 + 139301422 T

a score=139413.000000
s hg38.chr8_KI270814v1_alt    38947 388 +    141812 GACAAAACTGAATGCTTGTCAGGGGAAGAAGTGGACGCAACTGGCTGTTTGGCAGAGGGAACCCTCAGGTAGATTGCACGTTTGGCAGAAGGCCCAAGTGTGAAGATGACATGGTAGACAGCAGAAACCCTTTAGCAGGTCGCACGGTGGGCAGAAGGAACCTCTGAGCAGATTCCATGGTGGGCAGACGGAATGCCTAGGAAGAGTGCGTGGCTTGCAAAGGAAG-------CATCTGGAAAGAGGGAACATCTGGGAGAGAAAACATCCACCAAGATGGAGCGTTTggcggtagggatgtcagcggtggcagatccataggggcctgcaggcagcaacccgagctctcacctcatcagagggagtttaactgaggggcgtgaggcggagtgaa
s panTro4.chr8             54974330 388 + 143986469 GACAAAACTGAGTGCTTGTCAGGGGAAGAAGTGGACGCAACTGGCTGTTTGGCAGAAGGAACCCTCAGGTAGATTGCACGTTTGGCAGAAGGCCCAAGTGCGAAGATGACATGGTAGACAGCAGAAACCCTTCAGCAGGTCGCACGGTGGGCGGAAGGGACCTCTGAGCAGATTCCATGGTGGGCAGATGGAATGCGTAGGAAGAGTGCGTGGCTTGCAAAGGAAG-------CATCTGGAAAGAGGGAACATCTGGGAGAGAAAACATCCACCAAGGTGGAGCGTTTggcggtagggatgtcagcggtggcagatccataggggcctgcacgcagcaacccgagctctcgcctcatcagagggagtttaactgaggggcgtgaggcggggtgaa
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59019210 388 + 153482349 GACAAGACTGAGTGCTTGTCAGGGGAAGAAGTGGACGCAACTGGCTGTTTGGCAGAAGGAACACTCGGGTAGATTGCACGTTTGGCAGAAGGCCCAAGTGCGAAGATGACATGGTAGACAGCAGAAATCCTTTAGCAGGTCGCACGGTGGGCAGAAGGAACCTCTGAGCAGATTCCACGATGGGCAGACGGAATGCCTAGGAAGAGTGCGTGGTGTGCAAAGGAAA-------CATCTGGAAAGAGGGAACATTTGGGAGAGAAAACATCCGCCAAGATGGAGCATTTGGCGGTAGGGAagtcagcggtggcagatccataggggcctgcacgcagcaacccgagctcttgcctcgtcagagggagttcaactgagggttgtgaggtgtagtgaa
i ponAbe2.chr8             C 0 T 5740
s macFas5.chr8             58378594 382 + 146850525 GACAAGACTGAATGTTTGGCGGAAGAACATCT-GACATATTTGAATTTTTGGCAGAAGAAACATCTA---AGATGTAGTATTTGGCAGAAGAGACATCTAAGAGCATTGCGTGGT---CAGCAGGAACCCTGAGGGAGATGGCATGGTAGGCAGAGGAAGTATCTAAAAAGATTGCACAGTCTGCATAAGGATGACCTAGGAAGAGTGCATGGCCTGCAAAAGAAAAGATTCTAATCTGAAAAGATTAAATATTTGGCACGGGAAACATCTGATAAGGTTCAATGTTTGTTAGTAAAAATgttagtggtggcagatttgcatgtgtc----ggcagcaacctgaattgcctccccagaagaaagaattcaacggagggatataaggcagagtg--
i macFas5.chr8             T 5658 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730   3 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e nomLeu3.chr16            48103315 1943 + 100215132 T
e rheMac3.chr8             61647236 1931 + 150158102 T
e chlSab2.chr8             53246219 1911 + 139301422 T

a score=43617.000000
s hg38.chr8_KI270814v1_alt    39335 115 +    141812 agagaccgaggcctctttgagcgcaggagtgcaggtctcccagatggtaccagagcagaaagacgaggcagtaaggtatacttggaagagggccatgtgggcaactggagaggtc
s panTro4.chr8             54974718 115 + 143986469 agagaccgaggccactttgagcgcaggagtgcaggtctcccagatagtaccagagcagaaagatgaggcagtaaggtatacttggaagagggccatgtgggcaactggagaggtc
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59013858 115 + 153482349 agagaccaaggccattttgagcacgggagtgcctgtctcccagatagtaccagagcagaaaggcgaggcagtaacgtatacttagaagagggccacgtgggcaactggagaggtc
i ponAbe2.chr8             T 5740 C 0
s macFas5.chr8             58378976 115 + 146850525 agaggcaaaggcaagttttagagcaggagtgaaagtttcttaaaaagcattagagcagaaacaaaagaaaataaagtacatgtggaagaaagcaaagtgggtggcttgagagatc
i macFas5.chr8             C 0 I 30
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730   3 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e nomLeu3.chr16            48103315 1943 + 100215132 T
e rheMac3.chr8             61647236 1931 + 150158102 T
e chlSab2.chr8             53246219 1911 + 139301422 T

a score=16085.000000
s hg38.chr8_KI270814v1_alt    39450 65 +    141812 gggggcacgctttgttcgacctttgag---gcgaggtctcacacattggcaggcttccaagagccagg
s panTro4.chr8             54974833 65 + 143986469 aggggcacactttgttcgacctttgag---gtgaggtctcacagattggcaggcttccaagagccagg
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59013973 68 + 153482349 aggggcacgcttcgttcgacctttgaggctgcgaggtctcacacattggcaggcttccaggagccagg
i ponAbe2.chr8             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730  3 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e nomLeu3.chr16            48103315 1943 + 100215132 T
e rheMac3.chr8             61647236 1931 + 150158102 T
e macFas5.chr8             58379091 30 + 146850525 I
e chlSab2.chr8             53246219 1911 + 139301422 T

a score=7597.000000
s hg38.chr8_KI270814v1_alt    39515 24 +    141812 ggttgcattgcttcctcccctgag
s panTro4.chr8             54974898 24 + 143986469 ggttgcattgcttcctcccctgag
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59014041 22 + 153482349 ggttgcgttgcttcct--cctgag
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8             58379121 23 + 146850525 ggttgtgtta-tttttcccctgat
i macFas5.chr8             I 30 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730  3 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e nomLeu3.chr16            48103315 1943 + 100215132 T
e rheMac3.chr8             61647236 1931 + 150158102 T
e chlSab2.chr8             53246219 1911 + 139301422 T

a score=5609.000000
s hg38.chr8_KI270814v1_alt    39539 11 +    141812 ccttttctcag
s panTro4.chr8             54974922 11 + 143986469 ccttttcgcag
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59014063 11 + 153482349 ccttttcgcag
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48101372 11 + 100215132 CCttttcacgt
i nomLeu3.chr16            T 1943 C 0
s macFas5.chr8             58379144 11 + 146850525 tcttcccttag
i macFas5.chr8             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730  3 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e rheMac3.chr8             61647236 1931 + 150158102 T
e chlSab2.chr8             53246219 1911 + 139301422 T

a score=487446.000000
s hg38.chr8_KI270814v1_alt    39550 430 +    141812 ggtgggccatccacatgggcagtggcctgtcatcacctgggagggaccgcaggcgtggcgtgtttcctggagtcataggggcgctcacatgaggcgtgcctcccttggca-gtcggatgttgcctggggagggtcgtaggacagtaaaacccggccggtttgcctgtgagtgtgcaagcatgagccccgtcacgcgccccctgagatcttctcagggagctgctaatcgccaccttccggggtttctgtctgtctgggggaccgcccgtccctggcaccggctcccggcaatcatttattatttgagacaggtagtttaatggcagcctgacccgtcgcctcctggtcgcctgatgtgtctggtggggtgtgggcgtggccctctcccgcgctgctcctgtctgaccagccgcccacggtaacaCAGAAAC
s panTro4.chr8             54974933 412 + 143986469 ggtgggccatccacatgggcagtggcctgtcgtcacctgggagggaccgcaggcgtggcgtgtttcctggagtcataggggcgctcacatgaggcgtgcctcccttggca-gtcggctgttgcctggggagggtcataggacagtaaaacccggccggtttgcctgtgagggtgcaagcgtgagccccctcacccgccccctgagatcttctcagggagctgctaatcgccaccttcc--------tgtctgtctgggggaccgcccgtccctggcaccggctcccggcaatcatttgttatttgagacaggtagtttagtggcagcctgacccgtcacctcctggtc--------tgtctggtggggtgtgggcgtggccctc--ctgcgctgctcctgtgtgaccagccgcccacggtaacaCAGAAAC
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59014074 430 + 153482349 ggtggactgtccacatgggaggtggcctgtcggcacttgggaggggccacaggcgcagcgtgtttcctggagtcctgggggtgctcacttgaggcgtgcctccctcggca-gtcggatgttgcccagggagggtcatagaacagtgaaacccggccggtttgcctgttagtgtgcatgcatgagccccctcacccgccccctgagatcttctcgggaagctgctcatcaccaccttccagggtttctgtctgtctgggggactgcccatccgtggcgccagctcccggcaatcatttgttatttgagagaggcagtttaacagcagtctgaccagttgcctcctggtcacctgaggtatttggtggagtgtgggcgtggccctctcctgcgctgctcctgtctgaccagctgcccactgtaacaCAGAAAC
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48101383 429 + 100215132 ggtgtgctgtccacattggctgtgtcctgttgacagctgggaggggccataggcatggcgtttttcctgcagttgcaggcactctcacttgaggagtgtctttttcggca-gtaggatgttgcccggggaaggtcatagggtagtgaaacctggccggtgtgcctgtgaggaggtgtgtgtgagccccctcgcctgcctcctgataccttcttgaggagctgctcatcaccaccttctgggatttctgtctgttgggggcactg-ccgtccctggcgccccctcgcagccatcatttcttatttgagaaaggcaatttaacgatggcctgccccgtcacttcctggtcacctgacgtatctggtggggtgtgggctagaccctcttaggcgctactcctgtgtgtccagccatccacagtaacaCGGAAAC
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61645305 430 + 150158102 ggtgggctgtccacatcggcggtgtcctgttgacagctgggaggggccacaggcatgacatttttcctgcagttgtaagtgctctcacttgaggcgtgcctttttcggca-gtaggatgttgcctggggagggtcatagggcagtaaaacctggccagtatgcctgtgaggaggtgtgtgtgagctcccttgtccgtctcctgagatcttcttggggagctgctcatcaccaccttctggaatttctttctgttgtggggactgcccatccctggtgacctctcccagccatcttttcttattttagaatggcaatttaacaacggcctgatccgtcatgtcctggtcacctgacatatctggtggcgtgtgggctagaccctctcctgcactgctcctgtgtgtccagccacccacagtaacaTGGAAAC
i rheMac3.chr8             T 1931 C 0
s macFas5.chr8             58379155 418 + 146850525 ggtgtgctgtccatacatgcagtggcctgccagcacctgggagactgcatttgcagtgtgttttt--tggagttgtatgcctgctcacttaaggtattgttttttcaaaatgtaaggtgttctcagagacaggtcacaaatcaattaaa-atcaccatgttgcctcttactgcacacatctaagcccaccagctcaaatcctgagatattattatgaagctgctgatcaccaattttagatgtttctatttattg-gaaaactgcctttccctga-----gctagctgcaactaattattattttagaaaggtagtttaataaccacctcatct-tcaactcatggttttcttatattcctggtgaag-gtgggagcggggcttttctgtcctgctcatatctgactaggtacctaATGT--CATGGGAAC
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53244308 430 + 139301422 ggtgggctgtccacatcggcggtgtcctgttgacagctgggaggggccacaggcatgacgtttttcctgcagttgtaagtgctctcccttgaggcgtgcctttttcggca-gtaagatgttgcctggggagggtcatagggcagtaaaacctggccagtatgcctgtgaggaggtgtgtgtgagctcccttgcccgtctcctgagatcttcttggggagctgctcatcaccaccttctggaatttctgtctgttgtggggactgcccatccctggcgacccctgccagccatcttttcttattttggaatggcaatttaacagcggcctgacctgtcatgtcctggtcacctgacatctctggtggggtgtgggctaggccctctcctgcactgcttctgtgtgtccagccacccatggtaacaTGGAAAC
i chlSab2.chr8             T 1911 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730   3 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T

a score=112681.000000
s hg38.chr8_KI270814v1_alt    39980 71 +    141812 ATCTGGCAGGATGGAGTGGTTGGCGGAAGACACATCTGACGAGATCGAATGTTTTGCAGAAGAGCCATGTG
s panTro4.chr8             54975345 71 + 143986469 ATCTGGCAGGATGGAGTGGTTGGCGGAAGACACATCTGACGAGATGGAATGTTTTGCAGAAGAGCCATGTG
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59014504 71 + 153482349 ATCTGGCAGGATGGAATGCCTGGTGGAAGACACTTCTGATGAGATTGAATGTTTTGCAGAAGAGCCATGTG
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48101812 71 + 100215132 ATCTGGCAGGATGGAATGGTTGGTGGAAGACACTTCTGATGAGGTCGAATGTTTTGCAGAAGAGCCGTGTG
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61645735 71 + 150158102 ATCTGGCAGGATGAAATGTTTGGTGGAAGACACTTCTGATGAGGTCGAATGTTTTGCAGAAGAACTATGCG
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58379573 71 + 146850525 ATCGGACAAGATTGAATGTTTGGCAGAAGAAACATCTGATAAGTTTGCACGTTAAGCAGAATAAACATCTG
i macFas5.chr8             C 0 T 63102
s chlSab2.chr8             53244738 71 + 139301422 ATCTGGCAGGATGGAATGGTTGATGGAAGACACTTCTGATGAGGTCGAATGTTTTGCAGAAGAACTATGTG
i chlSab2.chr8             C 0 C 0
s monDom5.chr5              9605733 71 - 304825324 ATCTTAGAACACGGAATGTTAGAGAAAAGAGGGATCTTAGAACACGGAATGTTAGAGAAAAGAGGGATCTT
i monDom5.chr5             I 3 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e taeGut2.chr1A            23692651 539 +  73657157 T

a score=26405.000000
s hg38.chr8_KI270814v1_alt    40051 25 +    141812 -----ACGGGATCCGTGGTTTGGCAGAGGA
s panTro4.chr8             54975416 25 + 143986469 -----ACCGGATCTCTGGTTTGGCAGAGGA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59014575 25 + 153482349 -----ACCGGATCCCTGGTTTGGCAGAGGA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48101883 25 + 100215132 -----ATCGGATCCCTGGTTTGGCAGAGTA
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61645806 25 + 150158102 -----ATTGGATCCCTGCTTTGACAGAGTA
i rheMac3.chr8             C 0 T 2323
s chlSab2.chr8             53244809 25 + 139301422 -----ATTGGATCCCTGGTTTGACAGAGTA
i chlSab2.chr8             C 0 C 0
s monDom5.chr5              9605804 25 - 304825324 AGAACATAGAAT-----GTTAGAGAAAAGA
i monDom5.chr5             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e macFas5.chr8             58379644 63102 + 146850525 T

a score=33576.000000
s hg38.chr8_KI270814v1_alt    40076 28 +    141812 GACATGCGAGAAGACGGA-ACGTTTTGTC
s panTro4.chr8             54975441 28 + 143986469 GACATGCGAGAAGACGGA-GCGTTTTGTC
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59014600 28 + 153482349 GAAATGTGAGAAGATGGA-ACGTTTTTGC
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48101908 28 + 100215132 GACATGTGAGAAGACTGA-CAGTTTCGTC
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61643508 29 + 150158102 GACATGTGAGAGGACAGATACGTTTTGGC
i rheMac3.chr8             T 2323 C 0
s macFas5.chr8             58316542 29 + 146850525 GACATGTGAGAGGACAGATACGTTTTGGC
i macFas5.chr8             T 63102 C 0
s chlSab2.chr8             53244834 28 + 139301422 GGCATGCGAGAAGACTGA-ACGTTTCATC
i chlSab2.chr8             C 0 T 2331
s monDom5.chr5              9605829 27 - 304825324 GGGACCTTAGAACACGGA-ATGTTAGAG-
i monDom5.chr5             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e taeGut2.chr1A            23692651 539 +  73657157 T

a score=84570.000000
s hg38.chr8_KI270814v1_alt    40104 67 +    141812 CGAATAGACATCTGGCAGGGTGGAACG---GAGAGAACAGGTA---TGGTGGAGAGAACGTCTGAGAAGGTCG------
s panTro4.chr8             54975469 67 + 143986469 CGAACAGACATCTGGCAGGGTGGAATG---GAGAGAACAGGTA---TGGTGGAGAGAACGTCTGAGAAGGTCG------
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59014628 65 + 153482349 TGAAGAGACCTCTGGCAGAGTGGAATG---GAGAGAATAGG-----TGGCAGAGAGAACCTCTGAGAAGCTCG------
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48101936 54 + 100215132 -GTTGAAACCTCTTA-AAGGTGGAATG---TA--------------TGGCAGAAAGAACGTCTGAGAAGCTCA------
i nomLeu3.chr16            C 0 T 2332
s rheMac3.chr8             61643537 67 + 150158102 CGAAGAGACATCTAGCAGGGTGGAACA---GAGAGAACAGGTG---TGGCAGAGAGAAAGTCTGAGAAGCTTG------
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58316571 67 + 146850525 CGAAGAGACATCTAGCAGGGTGGAACA---GAGAGAACAGGTG---TGGCAGAGAGAAAGTCTGAGAAGCTTG------
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53242531 67 + 139301422 CGAAGAGACATCTGGCAGGGTGGAACA---GAGAGAACAGGTG---TGGCAGAGAGAACGTCTGAGAAGCTTG------
i chlSab2.chr8             T 2331 C 0
s monDom5.chr5              9605856 79 - 304825324 AAAAGAGGGATCTTAGAACATAGAATGTTAGAGAAAAGAGGGACCTTAGAACACGGAATGTTAGAGAAAAGAGGGATCT
i monDom5.chr5             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e taeGut2.chr1A            23692651 539 +  73657157 T

a score=43031.000000
s hg38.chr8_KI270814v1_alt    40171 28 +    141812 CAGGATTCGC---AGGAGCATCGGGAAAAGA
s panTro4.chr8             54975536 28 + 143986469 CAGGATTCGC---AGGAGCATCGGGAAAAGA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59014693 31 + 153482349 CAGGATTCACAGAAGGAGAATCGGGAGAAGA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48099658 31 + 100215132 CAGGATTCGCAGAAGGAGTATTGGGAGAAGA
i nomLeu3.chr16            T 2332 C 0
s rheMac3.chr8             61643604 31 + 150158102 CATGATTCGCAGAAGGAGCATCGGTAGAAGA
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58316638 31 + 146850525 CATGATTCGCAGAAGGAGCATCGGTAGAAGA
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53242598 31 + 139301422 CACGATTCGCAGAAGGAGCATCGGTAGAAGA
i chlSab2.chr8             C 0 C 0
s monDom5.chr5              9605935 26 - 304825324 TAGAACAT-----AGAATGTTAGAGAAAAGA
i monDom5.chr5             C 0 T 802
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e taeGut2.chr1A            23692651 539 +  73657157 T

a score=18029.000000
s hg38.chr8_KI270814v1_alt    40199 11 +    141812 TTGCCTGCTTG
s panTro4.chr8             54975564 11 + 143986469 TTGCCTATTTG
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59014724 11 + 153482349 TTGCCTGTTTG
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48099689 11 + 100215132 TTGCCTGTTTG
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61643635 11 + 150158102 CTGCCTGTTTG
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58316669 11 + 146850525 CTGCCTGTTTG
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53242629 11 + 139301422 TTGCCTCTTTG
i chlSab2.chr8             C 0 I 2318
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605961 802 - 304825324 T
e taeGut2.chr1A            23692651 539 +  73657157 T

a score=123430.000000
s hg38.chr8_KI270814v1_alt    40210 80 +    141812 CCCGAAGGAATGGCAAGTTCCAAAGGTCAGAGGCTCGCGTGAACTCTGTCGGGTTCGAGAGCAGCTCAGTGTTGCTGGTG
s panTro4.chr8             54975575 80 + 143986469 CCCGAAGGAATGGCAAGTTCCAAAGGTCAGAGGCTCGCGTGAACTCTGTCAGGTTCAGGAGCAGCTCAGTGTTGCTGCTG
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59014735 78 + 153482349 CCTGAAGGAATGGCAAGTTCCAAAGGTCAGAGGCTCGTGTGAA--CTGTCACGTTCAGGAGCAGCTCAGTTTTGCTGGTG
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48099700 80 + 100215132 CCCGAAGGAACTGCAAGTTCCAAAGGTCAGAGGCTCGCGTGAACTCTGTTGGGTTCAGGAACAGCTCAGTGTTGCTGGTG
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61643646 80 + 150158102 CCCAaaggaacgtcaagttccaaaggtcagaggctcgcgtgaactctgtcaggttcaggagcagctcagtgttgctggtg
i rheMac3.chr8             C 0 I 2309
s macFas5.chr8             58316680 80 + 146850525 CCCAAAGGAACGTCAAGTTCCAAAGGTCAGAGGCTCGCGTGAACTCTGTCAGGTTCAGGAGCAGCTCAGTGTTGCTGGTG
i macFas5.chr8             C 0 I 62981
s chlSab2.chr8             53244958 80 + 139301422 TCTGAAGGAACGTCAAGTTCCAAAGGTCAGAGACTCACATGAAGTCGTTTCGTTTTAGGAACCGCACATTGTTGCTCTTG
i chlSab2.chr8             I 2318 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605961 802 - 304825324 T
e taeGut2.chr1A            23692651 539 +  73657157 T

a score=2100.000000
s hg38.chr8_KI270814v1_alt    40290 1 +    141812 G
s panTro4.chr8             54975655 1 + 143986469 G
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59014813 1 + 153482349 G
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48099780 1 + 100215132 G
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61646035 1 + 150158102 G
i rheMac3.chr8             I 2309 C 0
s macFas5.chr8             58379741 1 + 146850525 G
i macFas5.chr8             I 62981 C 0
s chlSab2.chr8             53245038 1 + 139301422 G
i chlSab2.chr8             C 0 T 2319
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605961 802 - 304825324 T
e taeGut2.chr1A            23692651 539 +  73657157 T

a score=5303.000000
s hg38.chr8_KI270814v1_alt    40291 4 +    141812 CAAG
s panTro4.chr8             54975656 4 + 143986469 CAAG
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59014814 4 + 153482349 CAAG
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48099781 4 + 100215132 CAAG
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61646036 3 + 150158102 -AAA
i rheMac3.chr8             C 0 I 1
s macFas5.chr8             58379742 3 + 146850525 -AAA
i macFas5.chr8             C 0 I 1
s chlSab2.chr8             53242720 4 + 139301422 CAAG
i chlSab2.chr8             T 2319 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605961 802 - 304825324 T
e taeGut2.chr1A            23692651 539 +  73657157 T

a score=2210.000000
s hg38.chr8_KI270814v1_alt    40295 2 +    141812 AG
s panTro4.chr8             54975660 2 + 143986469 AG
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59014818 2 + 153482349 AG
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48099785 2 + 100215132 AG
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61646040 2 + 150158102 AG
i rheMac3.chr8             I 1 C 0
s macFas5.chr8             58379746 2 + 146850525 AA
i macFas5.chr8             I 1 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605961 802 - 304825324 T
e taeGut2.chr1A            23692651 539 +  73657157 T
e chlSab2.chr8             53242724 0 + 139301422 C

a score=63048.000000
s hg38.chr8_KI270814v1_alt    40297 45 +    141812 TGTGGTACGGGAATGGTTGGGTGTGGTTTGAATGTCTAGAAAAGG
s panTro4.chr8             54975662 45 + 143986469 TGTGGTACGGGAATGGTTGGGTGTGGTTTGAATGTCTAGAAAAGG
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59014820 45 + 153482349 TGTGGTACAGGAGTGGTTGGGCATGGTTTGAATGTCTAGAAAAGG
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48099787 45 + 100215132 TGTGGTACCGGAGTGGTTGGGCGTGGTTTGAATGTCTAGAAAAGG
i nomLeu3.chr16            C 0 T 291
s rheMac3.chr8             61646042 45 + 150158102 TGTGGTACTGATGTGGTTGGGCATGATTTGAATGTCTAGAAAAAG
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58379748 40 + 146850525 TGTGGCATGGGAGTGGT-----GTGGACTGAATACCTACATAAGG
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53242724 45 + 139301422 TGTGGTACAGAAGTGCTGGGGCGTGGTTTGAATGTCTAGAAAAGG
i chlSab2.chr8             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605961 802 - 304825324 T
e taeGut2.chr1A            23692651 539 +  73657157 T

a score=162634.000000
s hg38.chr8_KI270814v1_alt    40342 117 +    141812 CGAGCTGAGGGTAGATTTTTGAGCAGTCCAGAGCAGAAGGGGTAGAGGATATATTCTGTGGGCCACGGCCACATTCTCAGGATGCTCGTGGCTGTAAATAGTAGATGACCCA-----AGTAA
s panTro4.chr8             54975707 117 + 143986469 TGAGCTGAGGGTATATTTTTGAGCAGTCCAGAGCAGAAGGGGTAGAGGATGTATTCTGTGGGCCACAGCCACATTCTCAGGATGCTCGTGGCTGTAAATAGTAGATGACCCA-----AGTAA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59014865 117 + 153482349 CAAGCTGAGGGTAGATTTTTGAACAGTCCACAGCAGAAGGGGTAGAGGATATATTCTGTGGGCTATGGCCACATTCTTAGGATGCTCGTGGCTGTAAATAGTAGATGACCCA-----AGCAA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48099541 117 + 100215132 CGAGCTTAGGGAAGATTTTTGAGCAGTCCAGAGCAGGAGGGGTAGAGGATATATTTTGTGGGCCACGGCCACATTCTCAGGATGCTCGTGGCTTTAAATAGTAGATGACCCA-----AATAA
i nomLeu3.chr16            T 291 I 291
s rheMac3.chr8             61646087 117 + 150158102 TGAGCTTAGGGAAGATTTTTGAGCAATCCAGAGCAGGAGGGGTAGAGGATATATTTTGCGGGCCATGGCCACATTCTCAGGATGCTGTTGGCTATAAATAGTAGATGACCCA-----AGTAA
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58379788 115 + 146850525 CAAGCTTCAGAAAGCCTTTT-AATAGTATATA----AATGAGTAGAT--CTTATTCTGTGGGCCAGGGAAAAATTCTCTGAATACTTCTGGCTGTGAATATTAGCTGACCTAACTATAATAA
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53242769 117 + 139301422 CGAGCTGAGGGTAGATTTTTGAACAGTCCAGAGCAGGAGGGGTAGAGGATATATTTTGTGGGCCATGGCCACATTCTCAGGATGCTCTTGGCTATAAATAGTAGATGACCCA-----AGTAA
i chlSab2.chr8             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605961 802 - 304825324 T
e taeGut2.chr1A            23692651 539 +  73657157 T

a score=453731.000000
s hg38.chr8_KI270814v1_alt    40459 334 +    141812 GAGCGGCTGAAGCCATAGGCACCAGAATTGTGTCAGCATCGTCATGTCATGCTCATGTTTTCCCT--TCCAGCTGTGCTGTGGGCAGTGTTTAGTTCATGTCTGCTTTGCTGGCGGGCCGAGTAGCAACAGCTGCAGTTGGTGTGTTCTCTGAAGGCAGTATCCGAAGGCTGGAGGGGTTGCTTTTCTTCCCAGGTGTCTTTTGAAGAGGCAGTCAAGTCAGCAGCTCGCGGTGACCTTCTGGTAACATCGTATGGGCTGGGTTACAGcacatgccgactgctaagccggtcactggggaaaaccatgtgattgctgtgatgagcttagaatgatc
s panTro4.chr8             54975824 334 + 143986469 GAGTGGCTGAAGCCATAGGCACCAGAATTGTGGCAGCATCGTCGTGTCATGCTCACGTTTTCCCT--TCCAGCTGTGCTGTGGGCAGTGTTTAGTTCATGTCTGCTTTGCTGGCGGGCCGAGTAGCAACAGCTGCAGTTGGTGTGTTCTCTGAAGGCAGTATCTGAAAGCTGGAGGGGTTGCTTTTCTTCCCAGGTGTCTTTTGAAGAGGCAGTCAAGTCAGCAGCTCGCAGTGACCTTCTGGTAACATCGTAtgggctgggttacggcacatgctgactgctaagccggtcactggggaaaaccatgtgattgctgtgatgagcttagaatgatc
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59014982 334 + 153482349 GAGTGGCTGAAGCCGTAGGCAGCAGAATTGTGTCAGCATCCTTGTGTCACGCTCACGTTTTCCCT--TCCAGCCATTCTGTGGGCAGTGTTTAGTTCATGTCCGCTTTGCCGGTAGGCCGAGTAGCAACAGCTGCAGTTGGTGTGTTCTCTGAAGGCAGTATCTGAAGGGTGGAGGGGTTGCTTTTCTTCCCAGGTGTCTTTTGAAGAGGCAGTCAAGTCAGCAGTTCGCAGTGAGCTTCTGGTAATATCGTATGGACTGGGTTACAGcacattcccactgcgaagccagtcactggggaagaccatgtgattgctgtgatgagcttagaatgatc
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48099949 334 + 100215132 GAGTGGCTGAAGCCATACGCACCAGAGTTGTGTCAGCATCGTCGTGTCACGCTCACGTTTTCCCT--TCCAGCTGTGCTGTGGGCAGTGTTTAGTTCATGTCTGCTTTCCTGGCGGGCTGAGTAGCAACAGCTGCAGTCAGTGTGTTCTCTGAAGGCAGTATCTGAAGGGTGGAGGGGTTGCTCTTATTCCCAGGTGTCTTTTGAAGAGGCAGTCAAGTCAGCAGTTTGCAGTGACCTTCTGGTAACATCATATGGGCTGGGTTACAGCACAAGCCCACTGCTAAGCTGGTAACTGGGGAAGACCATGTGATTACTGTGATGAGCTTAGAATGATC
i nomLeu3.chr16            I 291 C 0
s rheMac3.chr8             61646204 333 + 150158102 GAGCGACTGAAGCCATAGGTACCAGAGTTGTGTTGGCATCATCATGTCACGCTCACGTTTTCCCT--TCCAGCCATGCTGCAGGCAGTTTTTAGTTCATGTCTGCTTTTCCGGTGGACTGAGTAGCAACAGCTGCAGTTGGCGTGTTGTCTGAAGGCAGTATCTGAAGTGTGGATGCGTTGGTCTTCTTCCCAGGTGTCTTTTGAAGAGGGCGTCAAGTCAGCAGCTCACAGTGACCTTCCGGAAATGTCATATGGGCTGTGTTACAGCACATGCCTATTGC-AAACCTGTCACTAGGGAAGGCCACGTGATTCCTGTGATGTGCTTAGAATGATC
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58379903 301 + 146850525 CAATGACTAAAACCATGGGAACCAAAGTTGTTTTGGTG------------GTTCAAGGATATCATAGCTTAGCTGTGCTACTGGCAGTGTTTTGTCCAT------------GGTTGGCTAATTAGCAATGACTTCAATCATCATGTTCTCTGAAGACAGTATGTGAAGGCTGGAAGGGTTGCCTTTCTTCAC--GTTTCTTTTAAATAGGGAGTAAACTCAGATGCTTGCAGTGATCTTCCTGTAACATTTTAGGG-------TACA--acatgctcattcctaaacgagtcaatatgaaagcaaatgtagttactttgattagctaagaataatc
i macFas5.chr8             C 0 T 60632
s chlSab2.chr8             53242886 332 + 139301422 GAGCAACTGAAGCCGTAGGCACCAGAGCTGTGTTGGCATCATCATGTCATGCTCACATTTTCCCT--TCCAG-TGTGCTGTGGTCAGTGTTTAGTTCATGTCTGCTTTCCCGGTGGGCCGAGTAGCAACAGCTGTAGTTGGC-TGTTCTCTGAAGGCAGTATTTGAAGGATGAAGGGGTTGCTCTTCTTCCCAGGTGTCTTTTGAAGAGGCAGTCAAGTCAGCAGCTCGCAGTGACCTTCTGGTAACATTGTATGGGCTGGGTTACAGcacatgcccactgctaagccagtcactggggaaggccatgtgattgctgtgatgagcttagaatggtc
i chlSab2.chr8             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605961 802 - 304825324 T
e taeGut2.chr1A            23692651 539 +  73657157 T

a score=5733.000000
s hg38.chr8_KI270814v1_alt    40793 3 +    141812 att
s panTro4.chr8             54976158 3 + 143986469 att
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59015316 3 + 153482349 att
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48100283 3 + 100215132 ATT
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61646537 3 + 150158102 ATT
i rheMac3.chr8             C 0 T 2311
s macFas5.chr8             58319572 3 + 146850525 ATT
i macFas5.chr8             T 60632 C 0
s chlSab2.chr8             53243218 3 + 139301422 att
i chlSab2.chr8             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605961 802 - 304825324 T
e taeGut2.chr1A            23692651 539 +  73657157 T

a score=16187.000000
s hg38.chr8_KI270814v1_alt    40796 11 +    141812 cctccttcggg
s panTro4.chr8             54976161 11 + 143986469 cctccttcggg
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59015319 11 + 153482349 cctcctttggg
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48100286 11 + 100215132 CCTCCTTCAGG
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61644229 11 + 150158102 cctccttcagg
i rheMac3.chr8             T 2311 C 0
s macFas5.chr8             58319575 11 + 146850525 TGTCTTTTGAg
i macFas5.chr8             C 0 T 2312
s chlSab2.chr8             53243221 11 + 139301422 cctccttcggg
i chlSab2.chr8             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605961 802 - 304825324 T
e taeGut2.chr1A            23692651 539 +  73657157 T

a score=1645814.000000
s hg38.chr8_KI270814v1_alt    40807 973 +    141812 agctggggtgggTTGAGGGAGTGATAAAGATCACGATAACCTTGCATTTCTCCAGCGAGAAAGAAGAAAGAAATTCCGTGGATAGGGAGCCAGCCAGGTTTCCTGCAGAAAATCATGGGAAGCTTTTGAGCAGGGGAGTCAGAAGATGAGCGGTGAGTATTAGGGCTTTCCGGTCACGGTGTGACAcagggattggccagctcttcctgtaaagggccaggtgggaagcactcgtaggccccgtggtctctgtcgtgtctgctgaagcctgccgtagtagcatggaagcagtcagagatgacgtgtaagcaaatggtcccgactgacctccggtaaagcattgattccggaagcaTTTAACAGACCTAACAACCTTTCAAACCGCATGGCGTTTCTTTCCCGGATCCCGTTTCAGGAACGTTTCTGTTGGC-TACAAGGACCGTCTCCAACATGCTTAGGCTCTGTGAACTTTCCCAGGAtcctgagtagggtatccgccattcgtccttagggctccgggatgtctcgttcttactgtgtccctgccaaccctggtcccatctcgtcatgatcacccactgcagaagagaggaggtgctagagtgaacagggtcaggg-gagccccgttcatccccagggtcccagaatgaaccagtgttaccatgtacccctgcccttgccttcctccctgctctaatggccgtgtgttagccggagatcagtttgggtctgggtgctatgggtctgttgcgcctgtggccttggtccggcctctgt-ccttgtctctgtgaaatgagagtgactgtgcctgagagcgttccagcaagacaatgatgatctccactgtctgattcccgcttcccaggttctcacagtagacgaggagcctgtttttcagctagctgccgcaagggggctggaaatttctcccttcagagtggacctggaaggcttggaagcatctggagaaggg
s panTro4.chr8             54976172 974 + 143986469 agctggggtgggTTGAGGGAATGATAAAGATCCCGATAACCTTGCATTTCTCCAGCGAGAAAGAAGAAAGAAATTCCGTGGATAGGGAGCCAGCCAGGTTTCCTGCAGAAAATCATGGGAAGCTTTTGAGCAGGGGAGTCAGAAGATGAGCGGTGAGTATTAGGGCTTTCCGGTCACGGCGTGACAcagggattggccagctcttcctgtaaagggccaggtgggaaacactcgtaggccccgtggtctctgtcgtgtctgctgaagcctgccgtagtagcgtggaagcagtcagagatgacgtgtaagcaaatggtcccgactgacctccagtaaagcattgattccggaagcaTTTAACAGACATAACAACCTTTCAAACCGCATGGCGTTTCTTTCCCAGATCCCGTTTCAGGAATGTTTCTGGTGGCTTACAAGGACCGTCTCCAGCATGCTTAGGctctcttaactttcctaggatcctgagtagggtatccgccattcgtccttagggctccgggatgtctcgttcttaccgtgtccctgccaaccctggtcccatctcgtcatgatcacccactgtagaagacaggaggtgctagaatgaacagggtcaggg-gagccccgttcatccccagggtcccagaatgaagcagtgttaccatgtacccctgcccttgccttcctccctgctctaatggccatgtgttacctagagatcagttttggtctgggtgctatgggtctgttgcgcctgtggccttggtctggcctctgt-ccttgtctctgtgaaatgagagtgactgtgcctgagagcattccagcaagacaatgatgatctccactgtctgattccggcttcccatgttctcacagtagacgaggagcctgtttttcagctagctgccgcaagggggctggaaatttctcccttcagagtggacctggaaggcttggaagcatctggagaaggg
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59015330 975 + 153482349 agctggggtgggTTGAGGGAACGATAAAGATCCCAATAACCTTGCATTTCTCCAGCGAGAAAGAAGAAAGAAATTCTGTGGATAGGGAGCTAGCCAGGTTTCCTGCAGAGAATCACGGGAAGCTTTTGAGCAGGGGAGTCAGAAGATGAGCGGTGAGTATTAGGGCTTTCCGATCATGGCGTGACAcacggattggccagctcttcctgtaaagggccaggtgggaaacactcgtaggccccgtggtctccgtcgtgtctgctgaagcctgctgtagtagcgtggaagcagtcagagatgacgtgtaagcaaatggtcccaactggcctccggtaaagcGTCGATTCCGgaagcatttaacagacctaacaacctttcaaaccacacagcgtttctttcccggatcccgtttcgggaatgtttctggtggcttacaaggaccgtctccaacatgcttaggctctcttaacttTGCCAGGAtcctgaatagggcatccaccattcgtccttagggctccgggatgtcttggtcttaccatctccctgccaaccctggtcccatctcgtcacgatcacccactggagaagagaggagatgctagagtgaacagggttgggg-gagccccgttcatccccggggtcccagaatgaaccagtgttaccatgtacccctgcccttgccttcctccctgctctattggccgtgtgttagcctgggatcagttttggtctgggtgctatgggtctgttgcgcctgtggccttggtccggcctctgtcccttgtctctgtgaaatgagagtgactgtgcctgagagcgttccagcaggacagtgatgatctccactgtctgattcccgcgtcccaggttctcacagtagacgagcatcctgtttttcagctagctgccgcaagggggctggacatttctcccttcagagtggacctggaaggcttggaagcatctggagaaggg
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48100297 975 + 100215132 AGCTGGGGTGGGTTGAGGGAACGATAAAGATCCTGACAACCTTGCGTTTCTCCAGAGAGAAAGAAGAAAGAAATTCCGTGGATAGGGAGCCAGCCAGGTTTCCTGCAGAGATTCACGGGAAGCTTTTGAGCAGGGGAGTCAGAAGATGAGTGGTGAGTATTAGGGCATTCCAGTCATGGCATGACGcagggtttggccagctcttcctgtaaagggccaggtgggaaatgcttgtaggccccgtggtcgcggtcatatctgctgaagcttgccgtagcagtgtggaagcagtctgagatgacacataagcaaatggtcctgactggcctctggtaaagcgtcaattccagaagcaTTGAATAGACCTAACAACCTTTCAAACTGCATGGCGTTTCTTTCCCGGGTCCTGCTTCAGGAATGTTTCTGGTGGCTTACAAGGACCGTGTCCAATGTGCTTGGGctctcttatctttcccaggatcctgaatagggcatcccctattcatccttagggctctgggatgtctcggtcttactgtgtccctgccaatcccggtgccgtctcgtcactatcacccactggagaagagaggaggtgctggagtgaactggttcggggaaagccccgttcatccctggggtcccggaatgaaccagtgttaccatgtgcccctgcccttgccttcctccctgctctaacggccgcgtgttagcctgggatcagccttggtctgagtgctacgggtctgttgcgcctgcggccttggtccggcctctgt-ccttgtctctctgacgtgagagtgactgtgggtgagagcattccagcaagacaatgatgatctctgctgtctgattcccgcttcccaggttctcacagtagacgaggagcctgtttttcagctagctgccgcaagggggctggacatttctcccttcaaataggaccgggaaggcctggaagcatctggagaaggg
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61644240 967 + 150158102 agctggggtgggTTGAGGGAACAATAAAGATCCTGATAACCCTGTGTTTCTCCAGTGAGGAAGAAGAAAGG----CTGTGGATAGGGAGCCAGCCAGGTTTCCTGTGGAGATTCACAGGAAGCTTTTAAGCAGGGGAGTCAGAAGATGAGCAGTGAGTATTAGGGCATTCCAGTCACGGCGTGATGCAGGGATTGTCCTGCTCTTCCTGTAAAGGGCCAGGTGGGAAACACTCGTAGGCCCCGTGGTGGCTGTCATGTCTGCTGAGGCTTCCCGTAGTAGCGTGGAAGCTGTCAGAGATGACGCTTAAGCAAATGGTCCTGACTGGCCTCTGGTAAAGCGTCAATTCTGGAAGGATTTAACAGACCTAACAACCTTTCAAGCTGCATGGCGTTTCTTTCCCATCTCCCGTTTTGGAAATGTTTCTGGCGGCTTACAAGGACTATCTCCAACGTGCTTGGTCTCTCTTAACTTTCCCAGGAtcctgaatcgggcatccactgttcatccttactgctctgggatgtctcggtcttaccatgtccctgccaatcctggtcccatctcatcacgatcacccact---gaagagaggaggtgctggagtgaacgtggttgggg-gagccccgttcatccccagggtcccagaatgaaccagtgttactgtgtacccctgatcttgccttcctccctgctctaacagccgtgtattagcctgggatcagctttggtcccagtgctattggtctgttgcgcctgcagccttggtccagcctctgt-ctttgtctccgtgacgtgagagtgactgtggctgagagcattccagcaagacaatgatgatctctgctgtctgattcccacttcccaggttctcacgatagatgaggagcctgtttttcagctagctgccgcaagggggctggacatttcacccttcagataggacctggaaggcctggaaacatctggagaaggg
i rheMac3.chr8             C 0 I 98
s macFas5.chr8             58317274 967 + 146850525 agctgggatgggTTGAGGGAACAATAAAGATCCTGATAACCCTGCGTTTCTCCAGTGAGGAAGAAGAAAGG----CTGTGGATAGGGAGCCAGCCAGGTTTCCTGTGGAGATTCACAGGAAGCTTTTAAGCAGGGGAGTCAGAAGATGAGCAGTGAGTATTAGGGCGTTCCAGTCACGGCGTGATGcagggattgtcctgctcttcctgtaaagggccaggtgggaaacactcgtaggccccgtggtggctgtcatgtctgctgaggcttcccgtagtagcgtggaagctgtcagagatgacgcttaagcaaatggtcctgactggcctctggtaaagcgtcagttctggaAGGATTTAACAGACCTAACAACCTTTCAAGCTGCATGGCGTTTCTTTCCCATCTCCCGTTTTGGAAATGTTTCTGGCGGCTTACAAGGACTATCTCCAACGTGCTTGGTCTCTCTTAACTTTCCCAGGAtcctgaatcgggcatccactgttcatccttactgctctgggatgtctcggtcttaccatgtccctgccaatcctggtcccatctcatcacgatcacccact---gaagagaggaggtgctggagtgaacgtggttgggg-gagccccgttcatccccagggtcccagaatgaaccagtgttactgtgtacccctggtcttgccttcctccctgctctaacagccgtgtattagcctgggatcagctttggtcccagtgctattggtctgttgcgcctgcagccttggtccagcctctgt-ctttgtctccgtgacgtgagagtgactgtggctgagagcattccagcaagacaatgatgatctctgctgtctgattcccacttcccaggttctcacgatagatgaggagcctgtttttcagctagctgccgcaagggggctggacatttcacccttcagataggacctggaaggcctggaaacatctggagaaggg
i macFas5.chr8             T 2312 C 0
s chlSab2.chr8             53243232 967 + 139301422 agctggggtgggTTGAGGGAACAATAAAGATCCTGATAACCCTGCGTTTCTCCAGTGAGGAAGAAGAAAGG----CTGTGGATAGGGAGCCAGCCAGGTTTCCTGCGGAGATTCACAGGAAGCTTTTAAGCAGGGGAGTCAGAAGATGAGCAGTGAGTATTAGGGCGTTCCAATCACGGTGTGATGcagggattgtcctgctcttcctgtaaagggccaggtgggaaacactcataggccccgtggtggctgtcatgtctgctgaagcctcccgtagtagcgtggaagcagtcagagatgacgcttaagcaaatggtcctggctggcctctggtaaagcgtcaattctggaAGGATTTAACAGACCTAACAACCTTTCAAACTGCATGGCGTTTCTTTCCCATCTCCCGTTTTGGAAATGTTTCTGGCGGCTTACAAGGACTATCTCCAACGTGCTTGGTCTCTCTTAAGTTTCCCAGGAtcctgaatcgggcatccactgttcgtccttactgctctgggatgtctcggtcttaccatgtccctgccaaccctggtcccatctcatcacgatcacccact---gaagagaggaggtgctggagtgaacgtggttgggg-gagccccgttcatccccagggtcccagaatgaaccagtgttactgtgtacccctggtcttgccttcctccctgctctaacagccgtgtattagcctgggatcagctttggtcccagtgctattggtctgttgcacctgcagccttggtccagcttctgt-ctttgtctccgtgacgtgagagtgactgtggctgagagcattccagcaagacaatgatgatctctgctgtctgattcccacttcccaggttctcacaatagatgaggagcctgtttttcagccagctgccgcaagggggctggacatttcacccttcagataggacctggaaggcctggaaacatctggagaaggg
i chlSab2.chr8             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605961 802 - 304825324 T
e taeGut2.chr1A            23692651 539 +  73657157 T

a score=96236.000000
s hg38.chr8_KI270814v1_alt    41780 100 +    141812 catggccacgagtagagaaatccaggctacaggcagaagtgggaggaagcgagagaggaagactcatggaaagccttgctgcactcgccaaaagagctgc
s panTro4.chr8             54977146 100 + 143986469 cgtggccacgagtagagaaatcgaggctacaggcagaagtgagaggaagcgagagaggaagactcatggaaagccttgctgcactcgccaaaagagctgc
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59016305 100 + 153482349 cgtggccatgagtagagaaatcgaggctacaggcagaagtgggaggaagcgagagaggaagactcatggaaagccttgctgcgctcaccaaaagagctgc
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48101272 100 + 100215132 cgtggctgtcagtagagaaacagaggCTACAGGCTGAGGCAGGAGGAAGCGAGAGAGGAAGACTCACGGAAGACCTTGCTGCGCTGTGCAAAAGAGCCGC
i nomLeu3.chr16            C 0 I 1782
s macFas5.chr8             58318241  88 + 146850525 tgtgactgtgagtagagaaaaggaCACTATT----------GGCGGAAGCAAGAGAGGAAGA--CACGGAAAGCCTTGCTGTGCTCTCCAAAAGAGCCGC
i macFas5.chr8             C 0 I 58561
s chlSab2.chr8             53244199  98 + 139301422 cgtgactgtgagtagagaaaaggaCACTATTGGCGGAAGCGGGCGGAAGCAAGAGAGGAAGA--CACGGAAAGCCTTGCTGTGCTCTCCAAAAGAGCCGC
i chlSab2.chr8             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605961 802 - 304825324 T
e taeGut2.chr1A            23692651 539 +  73657157 T
e rheMac3.chr8             61645207  98 + 150158102 I

a score=2910.000000
s hg38.chr8_KI270814v1_alt    41880 3 +    141812 cct
s panTro4.chr8             54977246 3 + 143986469 cct
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59016405 3 + 153482349 cct
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8             58376890 3 + 146850525 cct
i macFas5.chr8             I 58561 C 0
s chlSab2.chr8             53244297 3 + 139301422 CCT
i chlSab2.chr8             C 0 I 8
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605961 802 - 304825324 T
e taeGut2.chr1A            23692651 539 +  73657157 T
e nomLeu3.chr16            48101372 1782 + 100215132 I
e rheMac3.chr8             61645207 98 + 150158102 I

a score=91670.000000
s hg38.chr8_KI270814v1_alt    41883 248 +    141812 cggactcaagagggccacgttca-atgccaacctgacataaggtagtcacctctggagcacttgtggcctggggcaaaaacacagctggattgaaggaagagtcttccctgttcccagaggggcactg--actggaaatgagcatgaaggtggggtccctaaagggccacagaacgaggccctatgcaggtgtcggtacagactgccccaaaagccccctgagaagttggtcctggggtgtaagaggaaGG
s panTro4.chr8             54977249 246 + 143986469 cggactcaagagggccacgttca-atgccaacctgac--aaggtagtcacctctggagcactcttggcctggggcaaaaacacagccggattgaaggaagagtcttctctgttcccagaggggcactg--actggaaatgagcatgaaggtggggtccctaaagggccacagaacgaggccctgtgcaggtgtcggtacagactgccccaaaagccccctgagaagttggtcctggggcgtaagtggaaGG
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59016408 248 + 153482349 cggactcgagagggccacgttca-atgcctacctgacataaggtagtcacctttggagcacttgtggcctggagcaaaaacacggctggagtgaaggaagaatcttccctgttcccagaggggcactg--actggaaacaagcatgaaggtgggatccctaaagggccacagaaggaggccttatgcaggtgtcggtacagactgccccaaaagccccctgagaagttggtcctggggcgtaagaggaagg
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8             58376893 245 + 146850525 tgaatttgagagggccatatttatttgccctcttgacataaggtagtaacctccagaggatttgggccttagggtaaaaactcccaaaggttagaggaagaat-ttcccccctcccataggggtactatttccaaaaaaaagcaagtaggtagggttcttaaaaggccacagaatgaagctctatgcaggt----gaacaaatggcttcaaaagccactgaagaactgggccct-gagcataacagtaagg
i macFas5.chr8             C 0 T 57552
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605961 802 - 304825324 T
e taeGut2.chr1A            23692651 539 +  73657157 T
e nomLeu3.chr16            48101372 1782 + 100215132 I
e rheMac3.chr8             61645207  98 + 150158102 I
e chlSab2.chr8             53244300   8 + 139301422 I

a score=23145.000000
s hg38.chr8_KI270814v1_alt    42131 91 +    141812 CACAGTGAagagcaggagtgaaagctgcttcagcactttggagcaggaaggaaaggaag-----tgagatacagttggaagagggcgaagcgggca
s panTro4.chr8             54977495 91 + 143986469 CACAGTGAagagcaggagtgaaaggtgcttcagcactttggagcaggaaggaaaggaag-----cgagatacagttggaagagggcgaagcgggca
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59016656 96 + 153482349 cacggtgaagagcaggagtgaaagctgcttcagcactttggagcgggaagcaaaggaagtgagatgagatacagttggaagagggcgaagcaggca
i ponAbe2.chr8             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605961 802 - 304825324 T
e taeGut2.chr1A            23692651 539 +  73657157 T
e nomLeu3.chr16            48101372 1782 + 100215132 I
e rheMac3.chr8             61645207 98 + 150158102 I
e macFas5.chr8             58377138 57552 + 146850525 T
e chlSab2.chr8             53244300  8 + 139301422 I

a score=6228.000000
s hg38.chr8_KI270814v1_alt    42222 16 +    141812 acctgagggatggagt
s panTro4.chr8             54977586 16 + 143986469 acctgagggatggagt
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59016752 16 + 153482349 acctgagggatggagt
i ponAbe2.chr8             C 0 I 5737
s macFas5.chr8             58319586 16 + 146850525 acctgagttaacaagt
i macFas5.chr8             T 57552 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605961 802 - 304825324 T
e taeGut2.chr1A            23692651 539 +  73657157 T
e nomLeu3.chr16            48101372 1782 + 100215132 I
e rheMac3.chr8             61645207 98 + 150158102 I
e chlSab2.chr8             53244300  8 + 139301422 I

a score=192911.000000
s hg38.chr8_KI270814v1_alt    42238 500 +    141812 gcagggtttgaccttcgattctggatctcctccattagcaggcttccggggtggcgttgttgcctctctgccgatccttccttcgggtggggctgtcgactggcaccacggcctgtcagaccgtgggcggggggcgttgcaggcacagtgcggttcct--agtcttaggcatgctcacttgaggcgttcttcccctacctgtcgactgatctcagaggaaggagactgagctgctcagccctgccggtgtggctggcagggtgtcccgcattagcccatgtgcccgactcctgggatcttacagggaggctgctgatgtccaccttccagtgcttccgtccgttgggagcctgcccttccttggcgccggccggccgtgagcggttatcctccatagatagggttcaagaaccgcccaaccgtcacctcatggtcatctgacattcctggtggtggt-agggggaccccctggttccatgctcacatcagaccagctacctCG
s panTro4.chr8             54977602 502 + 143986469 gcagggtttgaccttcgattctggatctcctccattagcaggcttccggggtggcgttgttgcctctctgccgatccttcctttgggtggggctgtcgactggcgccacggactgtcagactgtgggcggggggcgttgcaggcacagtgcagttcctagagtcttaggcatgttcacttgaggcgttcttcccctacccgtcgactgatctcggaggaaggagactgagctgctcaagcctgccggtgtggctgtcagggtgtcccgcgttagcccatgtgcccgactcctgggatctgacagggaggctgctgatgtccaccttccagtgcttccgtccattgggagcctgcccttccttggtgccggccggccgtgagcggttatcctccatacatagggttcaagaaccgcccaaccgtcacctcgtggtcatctgacattcctggtggtggt-agggggaccccctggctccatgctcacatcagaccagctacctCG
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59022505 503 + 153482349 gcagggtttgaccctcaacttggggtctcctccgtgggcaggcttctggggtggcataattgcctctccactgatccttcccttgggcggtgctgtcaactggtgccgctctctgtcagcccatgggcggggggtgtcgcaggcacagtggtgttcttggagtcttaggcctgctcacttgaggcattcttcccctacccgttgagtgttctcagaggaaggggatggagctgctcaaccctgctggtgtggctgtcagggtgtcctgcgttatcccacatgcccaactcctgggatcttacagggaggctgctgatgtccaccttcctgcacttccatccgtcgggagcctgcccttccttggcttcggccggctgtgagcagttttcctccatagatagggttcaagtaccgcccaactgtcacctcatggtcatctgacattcctggtggtggtggggggggacccacagtactatgctcacgtgagaccaggtacctCA
i ponAbe2.chr8             I 5737 C 0
s macFas5.chr8             58319602 483 + 146850525 gcagggtttgac-------tcaaggtgtcatttgttggcaggctttcagggtggtgtttttgcctctcccctgatccttccttcgggtgggtctgtccactggtgccgcagcctgtcagcccatgggttttgggtgtcacatgagcagtgcagttcctagagtcttaggcttgt-----------gcccttttcttacccattgagtgttctcacaggaagggtatggagctgctaaacccaaccgttctggctgtta-ggtgtcctgcatgagcccacgcacatgattcctgggattttaccgggaagctgctgatgtccaccttccagctcttttgtcctttgggaggctgcccttttttggcactggcaggctgcgaacggttttcctccaaagaaacgtttcaacaactgcctgaccatcatctactggttgtctgacatttctggtggtggt-gggggaaacccctcataccctgctcatgtcagtccagctacctGG
i macFas5.chr8             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605961 802 - 304825324 T
e taeGut2.chr1A            23692651 539 +  73657157 T
e nomLeu3.chr16            48101372 1782 + 100215132 I
e rheMac3.chr8             61645207  98 + 150158102 I
e chlSab2.chr8             53244300   8 + 139301422 I

a score=26098.000000
s hg38.chr8_KI270814v1_alt    42738 61 +    141812 AGTGACAGGAACG-TCTGACAGGATTGCACATGTGGCAGAAGA-GCATCCGAGAAGGATGAAG
s panTro4.chr8             54978104 61 + 143986469 AGTGGCAGGAACG-TCTGACAGGATTGCAAATGTGGCAGAAGA-GCATCCGAGAAGGATGAAG
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59023008 61 + 153482349 AGTAACAGGAACC-TCTGACAGGGTTGCACATGTGGCAGAAGA-GCATCTGAGAAGATTGAAG
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8             58320085 61 + 146850525 AGTGACTGGAATG-TCTGACAGGATTGCACATTTGGCAGAAGA-ACATCTGAGACAATTCAGT
i macFas5.chr8             C 0 C 0
s monDom5.chr5              9605159 63 - 304825324 AGAGAAAAGAGGGATCTCAGAGCATGGAATGTTAGAGAAAAGAGGGATCTTAGGACATGGAAT
i monDom5.chr5             T 802 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e nomLeu3.chr16            48101372 1782 + 100215132 I
e rheMac3.chr8             61645207 98 + 150158102 I
e chlSab2.chr8             53244300  8 + 139301422 I

a score=110594.000000
s hg38.chr8_KI270814v1_alt    42799 164 +    141812 GTTTGGCAGAAGAAACACCTGCCAGATCAGACGTGAATGTGTGGCAGAAAGCCCATCTGGGAAGATTGCACACTGGGCAGAAGGAAGAGCTAAGAACGTTGTACAGACAGCGGAAGGAGTGCCTGTGGAGATTGCCCGGTGGGCGGTGGTAGCATCTGAGAGGA
s panTro4.chr8             54978165 164 + 143986469 GTTTGGCAGGAGAAACACCTACCAGATCAGATGTGAATGTGTGGCAGAAGGCCCATCTGGGAAGTTTGCACACTGGGCAGAAGGAAGAGCTAAGAACGTTGTACAGACAGCAGAAGGAGTGCCTCTGGAGATTGCCCGGTGGGCGGTGGTAGCATCTGAGAGGA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59023069 160 + 153482349 GTTTGGCAGAAGAAACACCTGCCAGATTAGACGTGAATGTGTGGTAGAAGGCCCATCTGGGAAGATTGCACACTGGGCAGTAGGAAGACCTAAGAACATTG----GACAGCAGAAGGAGTGCCTCATGAGATTGCCTGGTGGGTGGCGGAAGCATCTGAGAGGA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48103154 159 + 100215132 GTTTGGCAGAAGAAACCTCTGTCAGAT-----GTGAACGTGTGACAGAAGGACCATCCGGGAAGATTGCACACTGGGCAGAAAGAAGACTTAAGAACATTGCATGGACAGCAGAAGGAGTGCTTCGGGAGATTGCCTGGTGGGCAGCGGGAACACCTGAGATGA
i nomLeu3.chr16            I 1782 C 0
s macFas5.chr8             58320146 143 + 146850525 GTTTGGCAGA---------------------CATGAACATACAACAGAAGGGCCATCCAGGAAGACTGCACACTGGGCAGAAGGAAGACTTAAGAACATTGCATGGACAGCAGAAGGAGTGCTTCAGGAGATTGCCTGGTGGGCGGCAGGAACACCTGAGAGGA
i macFas5.chr8             C 0 I 62779
s monDom5.chr5              9605222 159 - 304825324 GTTAGAGAAAAGAGGGACCT--TAGAACACA---GAATGTTAGAGAAAAGAGGGATCTCAGAGCATGGAATGTTAGAGAAAAGAGGGACCTTAGAACACGGAATGTTAGAGAAAAGAGGGATCTCAGAGCATGGAATGTTAGAGAAAAGAGGGATCTTAGGACA
i monDom5.chr5             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e rheMac3.chr8             61645207  98 + 150158102 I
e chlSab2.chr8             53244300   8 + 139301422 I

a score=-750.000000
s hg38.chr8_KI270814v1_alt    42963 2 +    141812 TT-
s panTro4.chr8             54978329 2 + 143986469 TT-
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59023229 2 + 153482349 TT-
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48103313 2 + 100215132 CT-
i nomLeu3.chr16            C 0 T 1943
s monDom5.chr5              9605381 2 - 304825324 -TG
i monDom5.chr5             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e rheMac3.chr8             61645207 98 + 150158102 I
e macFas5.chr8             58320289 62779 + 146850525 I
e chlSab2.chr8             53244300 8 + 139301422 I

a score=12294.000000
s hg38.chr8_KI270814v1_alt    42965 63 +    141812 GCGGGGTGGGAGGGAGGATGAGCTGGGA----AGGATGCAA-----------GGCCTGGGGAGGCAACATGT------GAAGAC-----------
s panTro4.chr8             54978331 63 + 143986469 GTGGGGTGGGAGGGAGGATGAGCTGGGA----AGGATGCAA-----------AGCCTGGGGAGGCAACATGT------GAAGAC-----------
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59023231 63 + 153482349 GCGGGGTGGGCGGGAGGATGAGCTGGGA----AGGATTCAA-----------AGCCTCAGGAGGCAACATGT------GAAGAC-----------
i ponAbe2.chr8             C 0 C 0
s monDom5.chr5              9605383 95 - 304825324 GAATGTTAGAGAAAAGAGGGACCTTAGAACATAGAATGTTAGAGAAAAGAGGGACCTTAGAACACAGAATGTTAGAGAAAAGAGGGATCTCAGAG
i monDom5.chr5             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e nomLeu3.chr16            48103315 1943 + 100215132 T
e rheMac3.chr8             61645207 98 + 150158102 I
e macFas5.chr8             58320289 62779 + 146850525 I
e chlSab2.chr8             53244300  8 + 139301422 I

a score=82204.000000
s hg38.chr8_KI270814v1_alt    43028 259 +    141812 GATTAAATATGTGGCAGGAGAAACACCTGAGAAGATGGGATGCTTGGCAAGGGGAACAAGGCCCGGAATGGAGTGTTCGGGAGAAGAGACGCTTAGGGAGATTGCA-TGTGTGGCAGAAGGAACACGTG--------AGAAGGTTGCCATGGTGGACAGCAGAAAAATTGCAGCCGATGGCACAGCGGTGGGGAGGAAAACATAGGAAGCTTGCAAGCGCGTGGCCTGCGAAAGAAGCATCTGAA---------------------------------GAgatggcatgtctggcagagga
s panTro4.chr8             54978394 259 + 143986469 GATTAAATATGTGGCAGGAGAAACACCTGAGAAGATGGGATGCTTGGCAAGGGGAACAAGGCACAGAGCGGAGTGTTGGGGAGAAGAGACACTTAGGGAGATTGCA-TGTGTGGCAGAAGGAACACGTG--------AGAAGGTTGCCATGGTGGACAGCAGAAAAATTGCAGCCAATGGCACAGCGGTGGGAAGGAAATCATAGGAAGCTTGCAAGTGCGTGGCCTGCAAAAGAAGCATCTGAA---------------------------------GGGATGGCATGTCTGGCAGAGGA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59023294 258 + 153482349 GATTAAATATGTGGCAGAAGAAACACCTGAGAAGATGGGATACTTGCCAGAGGGAACAAGGGACAGAGTGGAGTGTTTGGGAGAAGGGACGCTTAGGGAGATTGCA-CGTGTGGCGGAAGGAACATGTG--------AGAAGGTTG-CATGGTGGACGGCAGAAACCTTGCAGCTGATGGCACAGCAGCAGGGAGGAAAACGTAGGAAGCATGCAAGTGTGTGGCCTGCGAAAGAACCATCTGAA---------------------------------GAGATGGCATGTCTGGCAGAGGA
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8             58383068 261 + 146850525 GATTGAATGTTTGTCAGAAAGAACACTTGACAAGAGTAATTTTTTGACAAAAGAAACATCTGACAATATTGAATGGTTGAGAGAAAAAAACATCTGAGAAGTGTCATTGTTTGGCAGAAGGAGTATATATATATCTTAGAAGATTG-CATGGTTAACA---------------------------------GAAGGAAGACCTAGGAA------AATAGCATGGCCTACAAAAGAAACATCTGAATAGAATGATGACTTAGGAGAAAAAGCATGTGATAGGATTAAATATTTTGCAGAGAA
i macFas5.chr8             I 62779 C 0
s monDom5.chr5              9605478 252 - 304825324 CATGGAATGTTAGAGAAAAGAGGGACCTTAGAACACGGAATGTTAGAGAAAAGAGGGATCTCAGAGCATGGAATGTTAGAGAAAAGAGGGATCTTAGGACATGGAA-TGTTAGAGAAAAGAGGGATCTC--------AGAGCATGG-AATGTTAGAGAAAAGAGGGATCTTAGAACACGGAATGTTAGAGAAAAGAGGGATCTTAGAA------CATAGAATGTTAGAGAAAAGAGGGACCTTAG---------------------------------AACACGGAATGTTAGAGAAAAGA
i monDom5.chr5             C 0 I 160
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e nomLeu3.chr16            48103315 1943 + 100215132 T
e rheMac3.chr8             61645207  98 + 150158102 I
e chlSab2.chr8             53244300   8 + 139301422 I

a score=155772.000000
s hg38.chr8_KI270814v1_alt    43287 529 +    141812 cacattgggcaagattccacgtttggcagc-AGGCCCGTGagcggcgacagacgcgtatgggcctgtggcaacctcggttcctgcctcctgagaagaaagacat----cgagtggcacacggtagagtgagagaccgaggcacgcattagagcaggggcgaaagttcctgaaatggtatcgtggcaggagccaaaggaagtcaaggaggcttggaagaggcccaggtgggcggtgacctgagaggt-ggagtacaggactggaccttggactcagggtctcccgcgtcggca-------------gcatcgctgcctgtcctctgatgcttccctcggcggggaagaggggactgttcactagcacagtggcctgtcaccatctcatgggggcgcgg---------------aggcgccgtgtgcttactggagttgttctcatgctctcttgaggcgttcctcccacaagcagatgaatgtgcccaggggaaaacatcccagatcagtgaaccttccaccagtttgcctctcagggtgcacgtgtgagcccattcacccaac
s panTro4.chr8             54978653 529 + 143986469 CACGTTGGGCAAGATTCCACGTTTGGCAGC-AGACCCGTGAGcggcggcagacgcgtatgggcctgtggcaacctcagttcctgcctcctgagaagaaagacat----cgagtggcacacggtagagtgagagaccaagacacgcattagagcaggggtgaaagttcctgaaatggtattgtggcaggagccaaagaaagtcaaggaggcttggaagaggcccaggtgggcggtgacctgagaggt-ggagtacaggacaggaccttggactcagggtctccagcgtcggca-------------gcatcgctgcgtgtcctctgatgcatcccttggcggggaagaaggggctgttcactagcacagtggcctgtcaccacctcatgagggcgcgg---------------aggcgccatgtgcttactggagttgttctcatactctctttaggcgttcctcccacaagcagatgaatgtgcccaggagaaaacatcctagatcagtgaaccttccgccagtttgcgtttcagggtgcatgtgtgagcccattcacccaac
i panTro4.chr8             C 0 T 1138
s ponAbe2.chr8             59023552 549 + 153482349 CACATTGGGCAAGATTCCACGTTTGGCAGTGGGGCCCGTGAGcggcggcagatgcgtacaggcctgcggcaacctcggttcctgcctcctgagaagaaagacatcgaccgaggggcacaaggcagagggagagactgaggcacacgttggagcaggggcgaaagttcctgaaaaggtgtcgtggtaggagccaaaggaagtcaaggaggcttggaagaggcccaggcaggcagcaacctgagaggt-ggagtgcggggctggaccttcgactcgggttctcccccactggca-------------gcattgctgccggtcccctgatgcttctcttgttggggaagagggggcagtccactggtgcagtggcctgtcagcatcttgttgtggggtggagggacgggggccacaggtgctgtgggcttactggagttgttagcatgcttgcttgaggcgttcctccagcaagcagacgaatgtgcccaggggtaaaggtcctagagcagtgaacctcccaccagtttgcctctcagggcacgtgcgtgagcccacttgcccaac
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8             58383329 523 + 146850525 AACACTAGAAAAGACTGAATGCTTGGAAGT-AGAAATTTCAGTGTCTGTGGATG-GAAAaggtctgccctaacctaaaatcttgccttattagaagaaagaattcaactgtggagcatagagcagagtgagagacactgacaagttttagagcaggagtgaaagtttattaaaaagtattaaagagggaatgaaaggaagcaaagtacacttggaagaggcccaagcatgc---aacctgagagatccaagtgcacagtttgacccttgacatgggtttttataggttggtagactttgggggatgcattac------ttctctgattcttccctt--------agaggaggct-ctcacatgtgcagtggcctgtcagc-tcttggaaggagccac---------------gtgtgcagagtctttattagagatatacgcacgctaacttgaggcattccacttttac-ctggtggattttttctgag--aatggtcatataccagttaaact-ctgccattttgcctcttactgtgcatgcatgagcccattagcccagc
i macFas5.chr8             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730 160 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e nomLeu3.chr16            48103315 1943 + 100215132 T
e rheMac3.chr8             61645207  98 + 150158102 I
e chlSab2.chr8             53244300   8 + 139301422 I

a score=124192.000000
s hg38.chr8_KI270814v1_alt    43816 1104 +    141812 tcccgaggtg-tgctggggag-------------gcttctgaggttcgtgactgctgtgggggagggggactgcctttccctggtgctgcctgtgatcagtgatttctctagagagtctgcttcgtgaccaccgggccatcaccttgcggctgcctgatgtttactggtggtggggaaccctctcgggccccgctcCACACGTGTGACTGAGAGGGACACCTGACAGGATTGAACGCGTGGCAGATCATCCGACGAGATGGAGTGTCTGGTGGAAGGAACATCTGACAGCCCTGAGCGTGTGGCAGAGGGAACATCTAAGCAGACTGCAGCGATTTCAGAAGGAACGGCTAAGAACATCGCATGGTCAGCAGGAGGAAACCTTAGGGTAGGGTGATTGCAGGGGTGCTGG-GGGGCAAGGGAACCCGTGAGAAGACTGCGGGATCAGCAGTTGGATGCCCTAGGGAGATTGCAAGGCCTGCCCAAGAGACATCTGGGTAGAGGAAGTATTGGGCCCATGGTGCGCCAGACAAAACTGAATGCTTGTCAGGGGAAGAAGTGGACGCAACTGGCTGTTTGGCAGAGGGAACCCTCAGGTAGATTGCACGTTTGGCAGAAGGCCCAAGTGTGAAGATGACATGGTAGACAGCAG-AAACCCTTTAGCAGGTCGCACGGTGGGCAGAAGGAACCTCTGAGCAGATTCCATGGTGGGCAGACGGAATGCCTAGGAAGAGTGCGTGGCTTGCAAAGGAAGCATCTGGAAAGAGGGAACATCTGGGAG-AGAAAACATCCACCAAGATGG---------------------------------AGCGTTTggcggtagggatgtcagcggtggcagatccataggggcctgcaggcagcaacccgagctctcacctcatcagaggg---agtttaactgaggggcgtgaggcggagtgaaagagaccgaggcctctttgagcgcaggagtgcaggtctcccagatggtaccagagcagaaagacgaggcagtaaggtatacttggaagagggccatgtgggcaactggagaggtcgggggcacgctttgttcgacctttgaggcgaggtctcacacattggcaggcttccaagagccaggggttgcattgcttcctcccctgag
s ponAbe2.chr8             59024101 1084 + 153482349 tccagaggtc-tgccagggag-------------gcgtccgatgttcctgactgctgtgggggacggggactgcctttccctggcactacctgcagccagtgatttctctcgagagtctgctttgcgaccacgtgaccatcacctcgcggctgccggacatttactggtggtggggaaccctctcgggccccgctcTGCACCTGTGACTGAGAGGGACACCTGACAGGATTGAACGCGTGCCAGATCATCCGACGAGATGGAGTGTCTGGCGGAAGGAACATCTGACAGGC----GAGTGTGACAGAGGTAACATCTAAGCAGACTGCAGCGATTTCGGAAGGAACTGCTAAGAACATCTCGTGGTCAGCATGAGGAAACCTTAGGGTAGGGAGATTGCAGGGGGGCTGGCAGGGTGAGGGAACCCGTGAGAAGACTGCGGGATTGGCAGTTGGACGCCCTAGGCAGATTGCAAGGCCTGCCCAAGAAACATCAGGGTAGAGGAAGTATTGGGCCCATGGTGCGTAGGACAAGACTGAGCACTTGTCAGGGGAGGGAGCGGACGCAACTGGCTGTTTGGCAGAAGGAACACTCAGGTAGACTGCACGTTTGGCAGAAGGCCTAAGTGCGAAGATGGCGTGGTCGACAGCAGAAAACCCTTAAGCAGGTCGCACGGTGGGCAGAAGGAACCTCTGAGCAAATTCCACGGTGGGTAGACGGAACACCTAGGAAGAGT------------------GCAGCTGGAAAGAGGGAACATTTGGGAG-AGAAAACATCCGCCAAGATGG---------------------------------GGTGTTTGGCAGTAGGGACGTCCGcggcggcggatccatagaggcctgcacgcagcaacctgagctctcccctcctcagagag---agtttgactgaggggagtgaggcggagggagagagaccgaggccacttagagcgcgggagcgccggtctcccagatggtaccggagcaggaaggtgaggcagtaaggtacacttagaagagggccacgtgggcaactggagaggtcaggggcacgctttgttcaacctttgaggcgaggtctcacacattggcaggctttcaggagccaggggttgcgtggcttcctcccctgag
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8             58383852 1003 + 146850525 tcttgaaatcttatcaggaagtcactgatcactagcttcagatgtttccctttactg--------ggagtctgccttttactggtg------gtgaccaatgattattttagagag--------------acctgaccatcacttcatggttgcctgacattc-ctagtgagaagaggccctctc-tgccctgct---aatgtctgact-----agctacctactgtaataGAAA-----------CATTGGCCAAGATTGAATGTTTGGTAGAAGAAACATCTGACAAGATTAAATATTTGACCAAAGAAACACTGGACAAGATT----CAATAT--------------------------TGGTTA----GAAGAAACATTGGACAAGATTGAATGT------------TTGGCAAGAAAAACAG--------------------------------CTGACAAGATTGGATGTTTGGTCTAAAAGACATCTGACAAGATTGAATGCTGGGGCAAAGAAACATCTGATAAAATTTAACATGTGGCAGGAGAAACAACTGA--CAATTGAATGGTTGGCAGAGGGAACATTTAAGAAGACTGCACATTTGGCAGAAGAAACATCTGAGAAGATTGCATGGTCGACAACAG-AAACATTTAAACAGATTTCATAGTGGGCAGAAAGAGTATCCAAGAAGACTGCATGGTTGGCAGAGAGAAAACCT-GAAAATGTGCAGGGCCTGCAAAAGAAACATGTAAAATAATTCAATATTTGGCAGAAGAAAACATCTGACAAGATCGAATATTTGGCCGAGAAAAAGGCTGACAAGATCTAATGTTTGGCAATAGGAATTttagcagctgtggatcagtagaagcctgca-gaagc--ctcaatttcttgcccctttagaagaaataattcaactgaggagcattaggcagagtg--agagacccaggcaagttttagagcaggagta-aaatttattaaaaagtaatagagcaagaaagaaaggaagtaaagtacactta-aagagggccaaacatgtgactttagatatcaggttcatgatttg----accttttacttggggccgtataggttggcaggcttctgaaa--------ttgcattacat----ttctgat
i macFas5.chr8             C 0 C 0
e ornAna1.Ultra479          3871811  995 -   6008416 T
e tetNig2.chr13             4300044  851 -  13302670 T
e punNye1.JH419232          4767720  338 +   5065651 T
e mayZeb1.JH720588          2493684  338 +   2778784 T
e hapBur1.JH425411          1657068  338 +   1983257 T
e neoBri1.JH422276          4185134  338 -  16571924 T
e araMac1.KE026486             3582  666 -     24340 T
e astMex1.KB882082          3904961  703 -   8876373 T
e takFla1.KE120500           511214  428 +    663757 T
e fr3.chr9                  3741472  428 -  13922460 T
e ficAlb2.chr1A            24321356  629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397  565 +  32995986 T
e zonAlb1.KB913045         12582078  625 +  16390125 T
e colLiv1.KB375358          1019695  647 +   1462937 T
e allMis1.JH737798            79979  829 +    106177 T
e falPer1.KB391107          2216113  646 -   3101084 T
e falChe1.KB398074          4263496  646 -   7151304 T
e macEug2.GL108065            83888  651 -    187545 T
e galGal4.chr1             24067632  655 + 195276750 T
e geoFor1.JH739914          5157808  631 -   7168866 T
e melGal1.chr1             24929366  674 + 204065131 T
e anaPla1.KB743807             6030  614 +     81650 T
e amaVit1.KB277496             7479  640 -     10329 T
e apaSpi1.KB929668          5961518  314 -  12308914 T
e cheMyd1.KB478633          2433661  653 +   6037886 T
e chrPic2.chr2             18523590  672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730  160 - 304825324 I
e taeGut2.chr1A            23692651  539 +  73657157 T
e nomLeu3.chr16            48103315 1943 + 100215132 T
e rheMac3.chr8             61645207   98 + 150158102 I
e chlSab2.chr8             53244300    8 + 139301422 I
e panTro4.chr8             54979182 1138 + 143986469 T

a score=2889.000000
s hg38.chr8_KI270814v1_alt    44920 11 +    141812 ccttttctcag
s ponAbe2.chr8             59025185 11 + 153482349 ccttttcgaag
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48101372 11 + 100215132 CCttttcacgt
i nomLeu3.chr16            T 1943 C 0
s macFas5.chr8             58384855 11 + 146850525 tcttttcttgg
i macFas5.chr8             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730 160 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e rheMac3.chr8             61645207 98 + 150158102 I
e chlSab2.chr8             53244300  8 + 139301422 I
e panTro4.chr8             54979182 1138 + 143986469 T

a score=229129.000000
s hg38.chr8_KI270814v1_alt    44931 320 +    141812 ggtgggccatccacatgggcagtggcctgtcatcacctgggagggaccgcaggcgtggcgtgtttcctggagtcataggggcgctcacatgag------------------------------------------gcgtgcctcccttggcagtcggatgttgcctggggagggtcgtaggacagtaaaacccggccggtttgcctgtgagtgtgcaagcatgagccccgtcacgcgccccctgagatcttctcagggagctgctaatcgccaccttccggggtttctgtctgtctgggggaccgcccgtccctggcaccggctcccggcaatcatttattatttgagacaggtagtttaat
s ponAbe2.chr8             59025196 316 + 153482349 ggcgggccatccacatgggcggtggcctgtcggcacttgggagggaccgcaggcgcggcgtgtttcctggagtcttaggggtgctcacttgag------------------------------------------gcgtgcctccctcggcagtcggatgttgcccagggagggtcataggacggtgaaacccggccggtttgcctgtgagtgcgcaagcgtgagccccctcgcctg-cccctgaaa---tctcgggttgttgctcatcgccaccttccagggtttgtgtctgtctgggggactgccggtccctggcgcgggctcccagcaatcatctgttatttgagagaggcagtttaac
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48101383 319 + 100215132 ggtgtgctgtccacattggctgtgtcctgttgacagctgggaggggccataggcatggcgtttttcctgcagttgcaggcactctcacttgag------------------------------------------gagtgtctttttcggcagtaggatgttgcccggggaaggtcatagggtagtgaaacctggccggtgtgcctgtgaggaggtgtgtgtgagccccctcgcctgcctcctgataccttcttgaggagctgctcatcaccaccttctgggatttctgtctgttgggggcactgcc-gtccctggcgccccctcgcagccatcatttcttatttgagaaaggcaatttaac
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61645305 320 + 150158102 ggtgggctgtccacatcggcggtgtcctgttgacagctgggaggggccacaggcatgacatttttcctgcagttgtaagtgctctcacttgag------------------------------------------gcgtgcctttttcggcagtaggatgttgcctggggagggtcatagggcagtaaaacctggccagtatgcctgtgaggaggtgtgtgtgagctcccttgtccgtctcctgagatcttcttggggagctgctcatcaccaccttctggaatttctttctgttgtggggactgcccatccctggtgacctctcccagccatcttttcttattttagaatggcaatttaac
i rheMac3.chr8             I 98 C 0
s macFas5.chr8             58384866 332 + 146850525 accagtctgtctgcatgcatagtagcctatcag--------------cacatgtacagtgtgtttactggagttgtatgcacattcagttaagCTTTCTTTATTCTGTTTTTTCATTTTTTATTGACTTTTTTTTTTTttttttttttaccagttgaatattcccagagaaaggtcataaatgttttaaactccaccattttgcccctta----gcgtacattagcctattcactcaactcttgagatcttattgggaaactgctgatcaacaactgtaggtgtttctatctattg-aaagactgcttttcctgggt-----------gtgaccaattattatctcatacaggcagtttaac
i macFas5.chr8             C 0 T 66538
s chlSab2.chr8             53244308 320 + 139301422 ggtgggctgtccacatcggcggtgtcctgttgacagctgggaggggccacaggcatgacgtttttcctgcagttgtaagtgctctcccttgag------------------------------------------gcgtgcctttttcggcagtaagatgttgcctggggagggtcatagggcagtaaaacctggccagtatgcctgtgaggaggtgtgtgtgagctcccttgcccgtctcctgagatcttcttggggagctgctcatcaccaccttctggaatttctgtctgttgtggggactgcccatccctggcgacccctgccagccatcttttcttattttggaatggcaatttaac
i chlSab2.chr8             I 8 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730 160 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e panTro4.chr8             54979182 1138 + 143986469 T

a score=113399.000000
s hg38.chr8_KI270814v1_alt    45251 102 +    141812 ggcagcctgacccgtcgcctcctggtcgcctgatgtgtctggtggggtgtgggcgtggccctctcccgcgctgctcctgtctgaccagccgcccacggtaac
s ponAbe2.chr8             59025512 102 + 153482349 ggtggcctgacccgtcacctcctggtcacctgaggtgtctggtggggtgtgggcgtggccctctcctgcactgctcctgtctgaccagccgcccacggtaac
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48101702 102 + 100215132 gatggcctgccccgtcacttcctggtcacctgacgtatctggtggggtgtgggctagaccctcttaggcgctactcctgtgtgtccagccatccacagtaac
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61645625 102 + 150158102 aacggcctgatccgtcatgtcctggtcacctgacatatctggtggcgtgtgggctagaccctctcctgcactgctcctgtgtgtccagccacccacagtaac
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58318660 102 + 146850525 aacggcctgatccgtcatgtcctggtcacctgacatatctggtggcgtgtgggctaggccctctcctgcactgctcctgtgtgtccagccacccacagtaac
i macFas5.chr8             T 66538 C 0
s chlSab2.chr8             53244628 102 + 139301422 agcggcctgacctgtcatgtcctggtcacctgacatctctggtggggtgtgggctaggccctctcctgcactgcttctgtgtgtccagccacccatggtaac
i chlSab2.chr8             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730 160 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e panTro4.chr8             54979182 1138 + 143986469 T

a score=152543.000000
s hg38.chr8_KI270814v1_alt    45353 132 +    141812 aCAGAAACATCTGGCAGGATGGAGTGGTTGGCGGAAGACACATCTGACGAGATCGAATGTTTTGCAGAAGAGCCATGTGACGGGATCCGTGGTTTGGCAGAGGAGACATGCGAGAAGACGGAACGTTTTGTC
s ponAbe2.chr8             59025614 132 + 153482349 aCAGAAATATCTGGCAGGATGGAATGGGTGGTGGAAGACACTTCTGAGGAGATCGAATGTTTTGCAGAAGAGCCATGTGACTGGTTCCCTGGTTGGGCAGAGGAGACATGCGAGAAGACGGAACGTTTTTGC
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48101804 131 + 100215132 aCGGAAACATCTGGCAGGATGGAATGGTTGGTGGAAGACACTTCTGATGAGGTCGAATGTTTTGCAGAAGAGCCGTGTGATCGGATCCCTGGTTTGGCAGAGTAGACATGTGAGAAGACTG-ACAGTTTCGT
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61645727 132 + 150158102 aTGGAAACATCTGGCAGGATGAAATGTTTGGTGGAAGACACTTCTGATGAGGTCGAATGTTTTGCAGAAGAACTATGCGATTGGATCCCTGCTTTGACAGAGTAGGCATGCGAGAAGACTGAACATTTCATC
i rheMac3.chr8             C 0 I 96
s macFas5.chr8             58318762 132 + 146850525 aTGGAAACATCTGGCAGGATGAAATGGTTGGTGGAAGACACTTCTGATGAGGTCGAATGTTTTGCAGAAGAACTATGCGATTGGATCCCTGGTTTGACAGAGTAGGCATGCGAGAAGACTGAACATTTCATC
i macFas5.chr8             C 0 I 2
s chlSab2.chr8             53244730 132 + 139301422 aTGGAAACATCTGGCAGGATGGAATGGTTGATGGAAGACACTTCTGATGAGGTCGAATGTTTTGCAGAAGAACTATGTGATTGGATCCCTGGTTTGACAGAGTAGGCATGCGAGAAGACTGAACGTTTCATC
i chlSab2.chr8             C 0 T 2331
s monDom5.chr5              9605890 131 - 304825324 AAAGAGGGACCTTAGAACACGGAATGTTAGAGAAAAGAGGGATCTTAGAACATAGAATGTTAGAGAAAAGAGGGATCTTAGAACATAGAATGTTAGAGAAAAGAGGGATCTTAGAACACGGAACGTTAGAG-
i monDom5.chr5             I 160 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e panTro4.chr8             54979182 1138 + 143986469 T

a score=31081.000000
s hg38.chr8_KI270814v1_alt    45485 67 +    141812 CGAATAGACATCTGGCAGGGTGGAACG---GAGAGAACAGGTATGGTGGAG---AGAACGTCTGAGAAGGTCG------
s ponAbe2.chr8             59025746 67 + 153482349 CAAAGAGACATCTGGCAGGGTGGAACG---GAGAGAACAGGTGTGGCAGAG---AGAACGTCTGAGAAGCTCG------
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48101935 55 + 100215132 CGTTGAAACCTCTTA-AAGGTGGAAT--------------GTATGGCAGAA---AGAACGTCTGAGAAGCTCA------
i nomLeu3.chr16            C 0 T 2332
s macFas5.chr8             58318896 53 + 146850525 ---TGAAACATCTTATAAGGTGGAAT--------------GTGTGGCAGAA---AGAACATCTTAGAAGCTCA------
i macFas5.chr8             I 2 C 0
s chlSab2.chr8             53242531 67 + 139301422 CGAAGAGACATCTGGCAGGGTGGAACA---GAGAGAACAGGTGTGGCAGAG---AGAACGTCTGAGAAGCTTG------
i chlSab2.chr8             T 2331 C 0
s monDom5.chr5              9606021 79 - 304825324 AAAAGAGGGATCTCAGAGCATGGAACGTTAGAGAAAAGAGGGATCTCAGAGCATGGAACGTTAGAGAAAAGAGGGATCT
i monDom5.chr5             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e rheMac3.chr8             61645859 96 + 150158102 I
e panTro4.chr8             54979182 1138 + 143986469 T

a score=2778.000000
s hg38.chr8_KI270814v1_alt    45552 10 +    141812 CAGGATTCGC
s ponAbe2.chr8             59025813 10 + 153482349 CAGTATTCGC
i ponAbe2.chr8             C 0 I 3
s nomLeu3.chr16            48099658 10 + 100215132 CAGGATTCGC
i nomLeu3.chr16            T 2332 C 0
s macFas5.chr8             58318949 10 + 146850525 TGTAGTTTGC
i macFas5.chr8             C 0 I 56208
s chlSab2.chr8             53242598 10 + 139301422 CACGATTCGC
i chlSab2.chr8             C 0 C 0
s monDom5.chr5              9606100  8 - 304825324 TAGAACAC--
i monDom5.chr5             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e rheMac3.chr8             61645859 96 + 150158102 I
e panTro4.chr8             54979182 1138 + 143986469 T

a score=2255.000000
s hg38.chr8_KI270814v1_alt    45562 2 +    141812 AG
s ponAbe2.chr8             59025826 2 + 153482349 AG
i ponAbe2.chr8             I 3 C 0
s nomLeu3.chr16            48099668 2 + 100215132 AG
i nomLeu3.chr16            C 0 I 2335
s macFas5.chr8             58375167 2 + 146850525 AG
i macFas5.chr8             I 56208 C 0
s chlSab2.chr8             53242608 2 + 139301422 AG
i chlSab2.chr8             C 0 I 2348
s monDom5.chr5              9606108 2 - 304825324 GG
i monDom5.chr5             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e rheMac3.chr8             61645859 96 + 150158102 I
e panTro4.chr8             54979182 1138 + 143986469 T

a score=5688.000000
s hg38.chr8_KI270814v1_alt    45564 16 +    141812 GAGCATCGG-GAAAAGA
s ponAbe2.chr8             59025828 16 + 153482349 GAGCATCGG-GAGAAGA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48102005 16 + 100215132 GAACATTTG-TAGAAGA
i nomLeu3.chr16            I 2335 C 0
s macFas5.chr8             58375169 15 + 146850525 GAACATCTG--ACAAGA
i macFas5.chr8             C 0 C 0
s monDom5.chr5              9606110 16 - 304825324 -AACGTTAGAGAAAAGA
i monDom5.chr5             C 0 T 967
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e rheMac3.chr8             61645859 96 + 150158102 I
e chlSab2.chr8             53242610 2348 + 139301422 I
e panTro4.chr8             54979182 1138 + 143986469 T

a score=3003.000000
s hg38.chr8_KI270814v1_alt    45580 11 +    141812 TTGCCTGCTTG
s ponAbe2.chr8             59025844 11 + 153482349 TTGCCTGTTTG
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48102021 10 + 100215132 TTCCCTGTTT-
i nomLeu3.chr16            C 0 C 0
s macFas5.chr8             58375184 11 + 146850525 TTGCATGTTTG
i macFas5.chr8             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9606126 967 - 304825324 T
e taeGut2.chr1A            23692651 539 +  73657157 T
e rheMac3.chr8             61645859 96 + 150158102 I
e chlSab2.chr8             53242610 2348 + 139301422 I
e panTro4.chr8             54979182 1138 + 143986469 T

a score=42192.000000
s hg38.chr8_KI270814v1_alt    45591 46 +    141812 CCCGAAGGAATGGCAAGTTCCAAAGGTCAGAGGCTCGCGTGAACTC
s ponAbe2.chr8             59025855 46 + 153482349 CCTGAAGGAAGGGCAAGTTCCACAGGTCAGAGGCTCATGTGAACTC
i ponAbe2.chr8             C 0 I 1
s nomLeu3.chr16            48102031 46 + 100215132 TCCGAAGGAACGTCAAGTTCCAAAAGTCAGAGACTCACATGAACTC
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61645955 46 + 150158102 TCTGAAGGAACGTCAAGTTCCAAAGGTCAGAGACTCACATGAAGTC
i rheMac3.chr8             I 96 I 12
s macFas5.chr8             58375195 46 + 146850525 GCAGAAGGAATAGCAAATACAAAAGGGCAGACCCTTGAGTGAATTT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53244958 46 + 139301422 TCTGAAGGAACGTCAAGTTCCAAAGGTCAGAGACTCACATGAAGTC
i chlSab2.chr8             I 2348 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9606126 967 - 304825324 T
e taeGut2.chr1A            23692651 539 +  73657157 T
e panTro4.chr8             54979182 1138 + 143986469 T

a score=1934.000000
s hg38.chr8_KI270814v1_alt    45637 12 +    141812 TGTCGGGTTCGA
s ponAbe2.chr8             59025902 12 + 153482349 TATCAGGTTCAG
i ponAbe2.chr8             I 1 C 0
s nomLeu3.chr16            48102077 12 + 100215132 TTTACGTTTTAG
i nomLeu3.chr16            C 0 C 0
s macFas5.chr8             58375241 12 + 146850525 TGTAGGGTTTAT
i macFas5.chr8             C 0 I 3
s chlSab2.chr8             53245004  7 + 139301422 -----GTTTCGT
i chlSab2.chr8             C 0 I 5
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9606126 967 - 304825324 T
e taeGut2.chr1A            23692651 539 +  73657157 T
e rheMac3.chr8             61646001 12 + 150158102 I
e panTro4.chr8             54979182 1138 + 143986469 T

a score=15609.000000
s hg38.chr8_KI270814v1_alt    45649 23 +    141812 GAGCAGCTCAGTGTTGCTGGTGG
s ponAbe2.chr8             59025914 23 + 153482349 GAGCAGCTCAGTGTTGCTGGTGG
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48102089 23 + 100215132 GAACCGTACATTGTTGCTATTGT
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61646013 23 + 150158102 GAACCGCACATTGTTGCTCTTGG
i rheMac3.chr8             I 12 T 2310
s macFas5.chr8             58375256 20 + 146850525 AAATT---CAATGTTGCTAGTGG
i macFas5.chr8             I 3 T 58516
s chlSab2.chr8             53245016 23 + 139301422 GAACCGCACATTGTTGCTCTTGG
i chlSab2.chr8             I 5 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9606126 967 - 304825324 T
e taeGut2.chr1A            23692651 539 +  73657157 T
e panTro4.chr8             54979182 1138 + 143986469 T

a score=5749.000000
s hg38.chr8_KI270814v1_alt    45672 6 +    141812 CAAGAG
s ponAbe2.chr8             59025937 6 + 153482349 CAACAG
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48102112 6 + 100215132 AAAGAG
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61643726 6 + 150158102 caagag
i rheMac3.chr8             T 2310 C 0
s macFas5.chr8             58316760 6 + 146850525 CAAGAG
i macFas5.chr8             T 58516 C 0
s chlSab2.chr8             53245039 6 + 139301422 AAAGAG
i chlSab2.chr8             C 0 T 2321
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9606126 967 - 304825324 T
e taeGut2.chr1A            23692651 539 +  73657157 T
e panTro4.chr8             54979182 1138 + 143986469 T

a score=276750.000000
s hg38.chr8_KI270814v1_alt    45678 232 +    141812 TGTGGTACGGGAATGGTTGGGTGTGGTTTGAATGTCTAGAAAAGGCGAGCTGAGGGTAGATTTTTGAGCAGTCCAGAGCAGAAGGGGTAGAGGATATATTCTGTGGGCCACGGCCACATTCTCAGGATGCTCGTGGCTGTAAATAGTAGATGACCCAAGTAAGAGCGGCTGAAGCCATAGGCACCAGAATTGTGTCAGCATCGTCATGTCATGCTCATGTTTTCCCTTCCAG
s ponAbe2.chr8             59025943 231 + 153482349 TGTGGTATGGGAGTGGTTGGGCTTGGTTTGAATGTCTAGAAAAGGCGAGCCGAGAGTAGATTTTTGAACAGTCTGGAGTATGAGGGGTAGAGAACATATTCTGTGGGCCACGGCCACATTCTCAGGATGCTCGTGGCTGTAAATAGTAG-TGATCCAAGTAAGAGCGGCTGAAACCATAGGCACTAGAGTTGTGTCGGCATCGTCGTGTCACACTCACGTTTTCCCTTCCAG
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48102118 230 + 100215132 TGTGGTACTGACGTGGTTGGGCATGATTTGAATGTCTAGAAAA-GCGAGCTTAGGGAAGATTTTTGAGCAGTCCAGAGCAGGAGGGGTAGAGGATATATTCTGTGGGCCACGGCCACATTCTCAGGATGCTCGTAGCTTTAAATAGTAGTTGACCCAAATAACAGCAGCTGAAGCCATAGGCACCAGAGTTGTGTTGGCATCGTCGTGTCACGCTCACA-TTTCCCTTCTAG
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61643732 232 + 150158102 tgTGGTACAGAAGTGGTTGGGCGTGGTTTGAATGTCTAGAAAAGGTGAGCTGAGGGTAGATTTTTGAACAGTTCAGAGCAGGAGGGGTAGAGGATATATTTTGCGGGCCACGGCCACATTCTCAGGATGCTCTTGGCTGTAAATAGTAGATGACCCAAGTAAGAGCGGCTGAAGGCATAGGCACCAGAGCTGTGTCGGCATCATCATGTTATGCTCACATTTTCCCTTCCAG
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58316766 232 + 146850525 TGTGGTACAGAAGTGGTTGGGCGTGGTTTGAATGTCTAGAAAAGGTGAGCTGAGGGTAGATTTTTGAACAGTTCAGAGCAGGAGGGGTAGAGGATATATTTTGCGGGCCACGGCCACATTCTCAGGATGCTCTTGGCTGTAAATAGTAGATGACCCAAGTAAGAGCGGCTGAAGGCATAGGCACCAGAGCTGTGTCGGCATCATCATGTTATGCTCACATTTTCCCTTCCAG
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53242724 232 + 139301422 TGTGGTACAGAAGTGCTGGGGCGTGGTTTGAATGTCTAGAAAAGGCGAGCTGAGGGTAGATTTTTGAACAGTCCAGAGCAGGAGGGGTAGAGGATATATTTTGTGGGCCATGGCCACATTCTCAGGATGCTCTTGGCTATAAATAGTAGATGACCCAAGTAAGAGCAACTGAAGCCGTAGGCACCAGAGCTGTGTTGGCATCATCATGTCATGCTCACATTTTCCCTTCCAG
i chlSab2.chr8             T 2321 I 2322
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9606126 967 - 304825324 T
e taeGut2.chr1A            23692651 539 +  73657157 T
e panTro4.chr8             54979182 1138 + 143986469 T

a score=1500.000000
s hg38.chr8_KI270814v1_alt    45910 1 +    141812 C
s ponAbe2.chr8             59026174 1 + 153482349 C
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48102348 1 + 100215132 C
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61643964 1 + 150158102 C
i rheMac3.chr8             C 0 I 2310
s macFas5.chr8             58316998 1 + 146850525 C
i macFas5.chr8             C 0 I 58521
s chlSab2.chr8             53245278 1 + 139301422 C
i chlSab2.chr8             I 2322 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9606126 967 - 304825324 T
e taeGut2.chr1A            23692651 539 +  73657157 T
e panTro4.chr8             54979182 1138 + 143986469 T

a score=154732.000000
s hg38.chr8_KI270814v1_alt    45911 180 +    141812 TGTGCTGTGGGCAGTGTTTAGTTCATGTCTGCTTTGCTGGCGGGCCGAGTAGC-----AACAGCTGCAGTTGGTGTGTTCTCTGAAGGCAGTATCCGAAGGCTGGAGGGGTTGCTTTTCTTCCCAGG---------------TGTCTTTTGAAGAGGCAGTCAAGTCAGCAGCTCGCGGTGACCTTCTGGTAACATCGTA
s ponAbe2.chr8             59026175 180 + 153482349 TGTGCTGTGGGCACTGTTTAGTTCATGTCTGCTTTCCCGGCGGGCCAAGTAGC-----AACAGCTGTAGTCAGCGTGTTCTCTGAAGGCAGTGTGTGAAGGGTGGAGGGGTTGCTCTTCTTCCCAGG---------------TGTCTTTTGAAGAGGCAGTCAAGTCAGCAGTTCGCAGTGAGCTTCTGGTAACATCGTA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48102349 180 + 100215132 CATGCTGTGGGCAGTTTTTAGTTCATGTGTGCTTTTCCGGTGGACTGAGTAGC-----AACAGCTGCAGTTGGCATGTTGTCTGAAGGCAGTATCTGAGGTGTGGATGGGTTGCCCTTCTTCCCAGG---------------TGTCTTTTCAACAGGGAGTCAAGTCTGCAGCTCATAGTGACCTTCCGGAAACATCATA
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61646275 180 + 150158102 CATGCTGCAGGCAGTTTTTAGTTCATGTCTGCTTTTCCGGTGGACTGAGTAGC-----AACAGCTGCAGTTGGCGTGTTGTCTGAAGGCAGTATCTGAAGTGTGGATGCGTTGGTCTTCTTCCCAGG---------------TGTCTTTTGAAGAGGGCGTCAAGTCAGCAGCTCACAGTGACCTTCCGGAAATGTCATA
i rheMac3.chr8             I 2310 C 0
s macFas5.chr8             58375520 184 + 146850525 TGTGCTCTTGGCAGTATTTTGTTAATGTCTCTTTTCATGGTTAGCTAAGTAGCCAATGAGTAGC--CAGTCATTATGTTCTCTCAAGACAGTATCTGAAGGCTGGAAGGGTT--TCTTTGTTTCATGATTTTTTGTTTGTTTTATTTTCAAAACAGGGAGCCAACTCAGAAGTTTGCAT------------AGGATCATA
i macFas5.chr8             I 58521 T 56214
s chlSab2.chr8             53245279 180 + 139301422 CATACTGCAGGCAGTTTTTAGTTCATGTCTGCTTTTCCGGTGGACTGCGTAGC-----AACAGCTGCAGTTGGCGTGTTGTCTGAAGGCAGTATCTGAAGTGTGGATGCATTGCTCTTCTTCCCAGG---------------TGTCTTTTGAAGAGGGAGTCAAGTCAGCAGCTCACAGTGACCTTCCGGAAATGTCATA
i chlSab2.chr8             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9606126 967 - 304825324 T
e taeGut2.chr1A            23692651 539 +  73657157 T
e panTro4.chr8             54979182 1138 + 143986469 T

a score=51012.000000
s hg38.chr8_KI270814v1_alt    46091 46 +    141812 TGGGCTGGGTTACAGcacatgccgactgctaagccggtcactgggg
s ponAbe2.chr8             59026355 46 + 153482349 TGGGCTGGGTTACAGcacatgcccactgctaagccggtcactgggg
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48102529 46 + 100215132 TGGTCTGTGTTACAGcacatgcctattgctaaacccatcactgggg
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61646455 45 + 150158102 TGGGCTGTGTTACAGCACATGCCTATTGC-AAACCTGTCACTAGGG
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58319490 45 + 146850525 TGGGCTGTGTTACAGCACATGCCTATTGC-AAACCCGTCACTAGGG
i macFas5.chr8             T 56214 I 56169
s chlSab2.chr8             53245459 45 + 139301422 TGGGCTGTGTTACAGCACATGCCTATTGC-AAACCCGTCACTAGGG
i chlSab2.chr8             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9606126 967 - 304825324 T
e taeGut2.chr1A            23692651 539 +  73657157 T
e panTro4.chr8             54979182 1138 + 143986469 T

a score=43342.000000
s hg38.chr8_KI270814v1_alt    46137 40 +    141812 aaaaccatgtgattgctgtgatgagcttagaatgatcatt
s ponAbe2.chr8             59026401 40 + 153482349 aagaccatgtgattgctgtgatgagcttagaatgatcatt
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48102575 40 + 100215132 aaggccatgtgattcatgtgatgtgcttagaatgatcaTT
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61646500 40 + 150158102 AAGGCCACGTGATTCCTGTGATGTGCTTAGAATGATCATT
i rheMac3.chr8             C 0 T 2311
s macFas5.chr8             58375704 40 + 146850525 AGATCAATGTAATTCCTATGATTAGCTTAGAATAATCAtt
i macFas5.chr8             I 56169 C 0
s chlSab2.chr8             53245504 40 + 139301422 AAGGCCACGTGATTCCTGTGATGTGCTTAGAATGATCATT
i chlSab2.chr8             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9606126 967 - 304825324 T
e taeGut2.chr1A            23692651 539 +  73657157 T
e panTro4.chr8             54979182 1138 + 143986469 T

a score=7028.000000
s hg38.chr8_KI270814v1_alt    46177 7 +    141812 cctcctt
s ponAbe2.chr8             59026441 7 + 153482349 cctcctt
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48102615 7 + 100215132 TCTCTTT
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61644229 7 + 150158102 cctcctt
i rheMac3.chr8             T 2311 C 0
s macFas5.chr8             58375744 7 + 146850525 tcttttt
i macFas5.chr8             C 0 I 114
s chlSab2.chr8             53245544 7 + 139301422 TCTCTTT
i chlSab2.chr8             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9606126 967 - 304825324 T
e taeGut2.chr1A            23692651 539 +  73657157 T
e panTro4.chr8             54979182 1138 + 143986469 T

a score=952.000000
s hg38.chr8_KI270814v1_alt    46184 2 +    141812 cg
s ponAbe2.chr8             59026448 2 + 153482349 tg
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48102622 2 + 100215132 CG
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61644236 2 + 150158102 ca
i rheMac3.chr8             C 0 C 0
s chlSab2.chr8             53245551 2 + 139301422 CG
i chlSab2.chr8             C 0 T 2323
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9606126 967 - 304825324 T
e taeGut2.chr1A            23692651 539 +  73657157 T
e macFas5.chr8             58375751 114 + 146850525 I
e panTro4.chr8             54979182 1138 + 143986469 T

a score=9225.000000
s hg38.chr8_KI270814v1_alt    46186 9 +    141812 ggagctggg
s ponAbe2.chr8             59026450 9 + 153482349 ggagctgga
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48102624 9 + 100215132 Agacctgag
i nomLeu3.chr16            C 0 T 2329
s rheMac3.chr8             61644238 9 + 150158102 ggagctggg
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58375865 9 + 146850525 GGAACTGAG
i macFas5.chr8             I 114 C 0
s chlSab2.chr8             53243230 9 + 139301422 ggagctggg
i chlSab2.chr8             T 2323 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9606126 967 - 304825324 T
e taeGut2.chr1A            23692651 539 +  73657157 T
e panTro4.chr8             54979182 1138 + 143986469 T

a score=69189.000000
s hg38.chr8_KI270814v1_alt    46195 64 +    141812 gtgggTTGAGGGAGTGATAAAGATCACGATAACCTTGCATTTCTCCAGCGAGAAAGAAGAAAGA
s ponAbe2.chr8             59026459 64 + 153482349 gtgggTTGCGGGAACGATAAAGATCCCAATAACCTTGCATTTCTTCAGCGAGAAAGAAGAAAGA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48100304 64 + 100215132 GTGGGTTGAGGGAACGATAAAGATCCTGACAACCTTGCGTTTCTCCAGAGAGAAAGAAGAAAGA
i nomLeu3.chr16            T 2329 C 0
s rheMac3.chr8             61644247 64 + 150158102 gtgggTTGAGGGAACAATAAAGATCCTGATAACCCTGTGTTTCTCCAGTGAGGAAGAAGAAAGG
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58375874 64 + 146850525 GTGGGATAATGGAATGATAAATATTCAAATAAATTTGTGTTTCTCCAGTGAGAAAGAAGAAAGA
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53243239 64 + 139301422 gtgggTTGAGGGAACAATAAAGATCCTGATAACCCTGCGTTTCTCCAGTGAGGAAGAAGAAAGG
i chlSab2.chr8             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9606126 967 - 304825324 T
e taeGut2.chr1A            23692651 539 +  73657157 T
e panTro4.chr8             54979182 1138 + 143986469 T

a score=-111.000000
s hg38.chr8_KI270814v1_alt    46259 4 +    141812 AATT-
s ponAbe2.chr8             59026523 4 + 153482349 AATT-
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48100368 4 + 100215132 AATT-
i nomLeu3.chr16            C 0 C 0
s macFas5.chr8             58375938 4 + 146850525 -ATAG
i macFas5.chr8             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9606126 967 - 304825324 T
e taeGut2.chr1A            23692651 539 +  73657157 T
e rheMac3.chr8             61644311 0 + 150158102 C
e chlSab2.chr8             53243303 0 + 139301422 C
e panTro4.chr8             54979182 1138 + 143986469 T

a score=642863.000000
s hg38.chr8_KI270814v1_alt    46263 648 +    141812 CCGTGGATAGGGAGCCAGCCAGGTTTCCTGCAGAAAATCATGGGAAGCTTTTGAGCAGGGGAGTCAGAAGATGAGCGGTGAGTATTAGGGCTTTCCGGTCACGGTGTGACAcagggattggccagctcttcctgtaaagggccaggtgggaagcactcgtaggccccgtggtctctgtcgtgtctgctgaagcctgccgtagtagcatggaagcagtcagagatgacgtgtaagcaaatggtcccgactgacctccggtaaagcattgattccggaagcaTTTAACAGACCTAACAACCTTTCAAACCGCATGGCGTTTCTTTCCCGGATCCCGTTTCAGGAACGTTTCTGTTGGC-TACAAGGACCGTCTCCAACATGCTTAGGCTCTGTGAACTTTCCCAGGAtcctgagtagggtat-ccgccattcgtccttagggctccgggatgtctcgttcttactgtgtccctgccaaccctggtcccatctcgtcatgatcacccactgcagaagagaggaggtgctagagtgaacagggtcaggg-gagccccgttcatccccagggtcccagaatgaaccagtgttaccatgtacccctgcccttgccttcctccctgctctaatggccgtgtgttagccggagatcagt
s ponAbe2.chr8             59026527 649 + 153482349 CCGTGGATAGGGAGCCAGCCAGGTTTCCTGCAGAGAATCATGGGAAGCTTTTGAGCAGGGGAGTCAGAAGATGAGCAGTGAGTATTAGGGCTTTCCGATCACGGCGTGACGcagggtttggccagctcttcctgtaaagggccaggtgggaaacgcttgtagtccccgtcgtctctgtcatgtctgctgaagcctgccatagcagtgtggaagcagtcggagatgacacgtaagcaaatggtcctgactggcctccggtaaagcattgattccagaagcaTTTAACAGACCTAACAACCTTTCAAACCGCACAGCGTTTCTTTCTCGGGTCCTGTTTCAGGAATGTTTTTGGCGGCTTACAAGGACCATGTCCAACGTGCTTGGGctctcttatctttcccaggatcctgaatagggcaa-cccccattcatccttagggctctgggatgtctcggtcttactgtgtccctgccaaccccggtgccatcttgtcatgatcacccactggagaagagaggaggtgctggagtgaaccgattcgggg-aagccccattcatccctggggtcccggaatgaaccggtgttaccatatgcccctgttcttgccttcttccctgctctaacggccatgtgttagcctgggatcagc
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48100372 650 + 100215132 CCGTGGATAGGGAGCCAGCCAGGTTTCCTGCAGAGATTCACGGGAAGCTTTTGAGCAGGGGAGTCAGAAGATGAGTGGTGAGTATTAGGGCATTCCAGTCATGGCATGACGcagggtttggccagctcttcctgtaaagggccaggtgggaaatgcttgtaggccccgtggtcgcggtcatatctgctgaagcttgccgtagcagtgtggaagcagtctgagatgacacataagcaaatggtcctgactggcctctggtaaagcgtcaattccagaagcaTTGAATAGACCTAACAACCTTTCAAACTGCATGGCGTTTCTTTCCCGGGTCCTGCTTCAGGAATGTTTCTGGTGGCTTACAAGGACCGTGTCCAATGTGCTTGGGctctcttatctttcccaggatcctgaatagggcat-cccctattcatccttagggctctgggatgtctcggtcttactgtgtccctgccaatcccggtgccgtctcgtcactatcacccactggagaagagaggaggtgctggagtgaactggttcggggaaagccccgttcatccctggggtcccggaatgaaccagtgttaccatgtgcccctgcccttgccttcctccctgctctaacggccgcgtgttagcctgggatcagc
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61644311 646 + 150158102 CTGTGGATAGGGAGCCAGCCAGGTTTCCTGTGGAGATTCACAGGAAGCTTTTAAGCAGGGGAGTCAGAAGATGAGCAGTGAGTATTAGGGCATTCCAGTCACGGCGTGATGCAGGGATTGTCCTGCTCTTCCTGTAAAGGGCCAGGTGGGAAACACTCGTAGGCCCCGTGGTGGCTGTCATGTCTGCTGAGGCTTCCCGTAGTAGCGTGGAAGCTGTCAGAGATGACGCTTAAGCAAATGGTCCTGACTGGCCTCTGGTAAAGCGTCAATTCTGGAAGGATTTAACAGACCTAACAACCTTTCAAGCTGCATGGCGTTTCTTTCCCATCTCCCGTTTTGGAAATGTTTCTGGCGGCTTACAAGGACTATCTCCAACGTGCTTGGTCTCTCTTAACTTTCCCAGGAtcctgaatcgggcat-ccactgttcatccttactgctctgggatgtctcggtcttaccatgtccctgccaatcctggtcccatctcatcacgatcacccact---gaagagaggaggtgctggagtgaacgtggttgggg-gagccccgttcatccccagggtcccagaatgaaccagtgttactgtgtacccctgatcttgccttcctccctgctctaacagccgtgtattagcctgggatcagc
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58375942 626 + 146850525 TCATGGATAGGGAGCCAGTGAGGTTTTCTGCAGGGATTCATGCAAAGATTTTGGGTAGGGGGGCCCCAAGAGGAGGTGTGAGTATTAGGGCATTCTGGTTACGATATAAAGTagggattggcaagcttttcctgtaaagggccagatagcaaacatttctaggtcttgtagtctctgttgtatgttttcaaccctgttgttgcagtgtgaaaggagtcagaaataatatggaagcaaataggcacatttgtgctccagtaaagcttcctttCCtgaagcatttgatagacataacaacctttaaagttgtataacatttctttcctaaggttcctttcacaaagctttctcataactcacacagaccatctacaagatgcttgaactttcttaaatttcttatGAtcctgaatagggcatccccccattcatccttagtattctggagcaaatcgttcttactgtgtgtcc-ctaatcttggtcccatctcattacaattacccccttgagaacataaaacatactgaagtgaaca-----gagg-atcccctgtttatccttggggttccagaatgaaccagttttactgtgtactgctaaccttgccttcatc------------------ttctagcctgggaccaat
i macFas5.chr8             C 0 T 58577
s chlSab2.chr8             53243303 646 + 139301422 CTGTGGATAGGGAGCCAGCCAGGTTTCCTGCGGAGATTCACAGGAAGCTTTTAAGCAGGGGAGTCAGAAGATGAGCAGTGAGTATTAGGGCGTTCCAATCACGGTGTGATGcagggattgtcctgctcttcctgtaaagggccaggtgggaaacactcataggccccgtggtggctgtcatgtctgctgaagcctcccgtagtagcgtggaagcagtcagagatgacgcttaagcaaatggtcctggctggcctctggtaaagcgtcaattctggaAGGATTTAACAGACCTAACAACCTTTCAAACTGCATGGCGTTTCTTTCCCATCTCCCGTTTTGGAAATGTTTCTGGCGGCTTACAAGGACTATCTCCAACGTGCTTGGTCTCTCTTAAGTTTCCCAGGAtcctgaatcgggcat-ccactgttcgtccttactgctctgggatgtctcggtcttaccatgtccctgccaaccctggtcccatctcatcacgatcacccact---gaagagaggaggtgctggagtgaacgtggttgggg-gagccccgttcatccccagggtcccagaatgaaccagtgttactgtgtacccctggtcttgccttcctccctgctctaacagccgtgtattagcctgggatcagc
i chlSab2.chr8             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9606126 967 - 304825324 T
e taeGut2.chr1A            23692651 539 +  73657157 T
e panTro4.chr8             54979182 1138 + 143986469 T

a score=31492.000000
s hg38.chr8_KI270814v1_alt    46911 28 +    141812 ttgggtctgggtgctatgggtctgttgc
s ponAbe2.chr8             59027176 28 + 153482349 cttggtctgggtgctatgggtctgttgc
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48101022 28 + 100215132 cttggtctgagtgctacgggtctgttgc
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61644957 28 + 150158102 tttggtcccagtgctattggtctgttgc
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58317991 28 + 146850525 tttggtcccagtgctattggtctgttgc
i macFas5.chr8             T 58577 I 58549
s chlSab2.chr8             53243949 28 + 139301422 tttggtcccagtgctattggtctgttgc
i chlSab2.chr8             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9606126 967 - 304825324 T
e taeGut2.chr1A            23692651 539 +  73657157 T
e panTro4.chr8             54979182 1138 + 143986469 T

a score=234617.000000
s hg38.chr8_KI270814v1_alt    46939 216 +    141812 gcctgtggccttggtccggcctctgtccttgtctctgtgaaatgagagtgactgtgcctgagagcgttccagcaagacaatgatgatctccactgtctgattcccgcttcccaggttctcacagtagacgaggagcctgtttttcagctagctgccgcaagggggctggaaatttctcccttcagagtggacctggaaggcttggaagcatctgga
s ponAbe2.chr8             59027204 216 + 153482349 gcctgtggccttggtccggcctctgtccttgtctctgtgaggtgagagtgactgtgggtgagagcattccagcaagacaatgatgatctctgctgtctgattcctgcttcccaggttctcacagtagacgaggagcctgtttttcagctagctgccgcaagggggctggacatttctcccttcaaataggacctggaaggcctGAGAGCATCTGGA
i ponAbe2.chr8             C 0 T 5379
s nomLeu3.chr16            48101050 216 + 100215132 gcctgcggccttggtccggcctctgtccttgtctctctgacgtgagagtgactgtgggtgagagcattccagcaagacaatgatgatctctgctgtctgattcccgcttcccaggttctcacagtagacgaggagcctgtttttcagctagctgccgcaagggggctggacatttctcccttcaaataggaccgggaaggcctggaagcatctgga
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61644985 216 + 150158102 gcctgcagccttggtccagcctctgtctttgtctccgtgacgtgagagtgactgtggctgagagcattccagcaagacaatgatgatctctgctgtctgattcccacttcccaggttctcacgatagatgaggagcctgtttttcagctagctgccgcaagggggctggacatttcacccttcagataggacctggaaggcctggaaacatctgga
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58376568 216 + 146850525 gccctcaatcttggcctggcctccatccatgtctccatgatcttagagtgactctcgctcagagcattctagcaggaaaatgatgatctctttactcaaattcccgtttgtcatcttctttaactagatgagaagcctgtttttcagctaagtgctgcaagggggtttgactttactccatttgaatttgaccttgaagaccttgatgcatattga
i macFas5.chr8             I 58549 C 0
s chlSab2.chr8             53243977 216 + 139301422 acctgcagccttggtccagcttctgtctttgtctccgtgacgtgagagtgactgtggctgagagcattccagcaagacaatgatgatctctgctgtctgattcccacttcccaggttctcacaatagatgaggagcctgtttttcagccagctgccgcaagggggctggacatttcacccttcagataggacctggaaggcctggaaacatctgga
i chlSab2.chr8             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9606126 967 - 304825324 T
e taeGut2.chr1A            23692651 539 +  73657157 T
e panTro4.chr8             54979182 1138 + 143986469 T

a score=8730.000000
s hg38.chr8_KI270814v1_alt    47155 6 +    141812 gaaggg
s ponAbe2.chr8             59022041 6 + 153482349 gaaggg
i ponAbe2.chr8             T 5379 C 0
s nomLeu3.chr16            48101266 6 + 100215132 gaaggg
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61645201 6 + 150158102 gaaggg
i rheMac3.chr8             C 0 I 98
s macFas5.chr8             58376784 6 + 146850525 gaaggg
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53244193 6 + 139301422 gaaggg
i chlSab2.chr8             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9606126 967 - 304825324 T
e taeGut2.chr1A            23692651 539 +  73657157 T
e panTro4.chr8             54979182 1138 + 143986469 T

a score=61283.000000
s hg38.chr8_KI270814v1_alt    47161 100 +    141812 catggccacgagtagagaaatccaggctacaggcagaagtgggaggaagcgagagaggaagactcatggaaagccttgctgcactcgccaaaagagctgc
s ponAbe2.chr8             59022047 100 + 153482349 catggccatgagtagagaaatcgaggctatgggcggaagtgggaagaagcaagagaggaagactcatggaaagccttgctgtgctcgccaaaagagctgc
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48101272 100 + 100215132 cgtggctgtcagtagagaaacagaggCTACAGGCTGAGGCAGGAGGAAGCGAGAGAGGAAGACTCACGGAAGACCTTGCTGCGCTGTGCAAAAGAGCCGC
i nomLeu3.chr16            C 0 I 1782
s macFas5.chr8             58376790 100 + 146850525 catagaagtgattagagaaatagaagctacaggaggaagtgggaggaagcgagtgaggaatactcatggaaagcctccctgtgctccccaaaacagccac
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53244199  98 + 139301422 cgtgactgtgagtagagaaaaggaCACTATTGGCGGAAGCGGGCGGAAGCAAGAGAGGAAGA--CACGGAAAGCCTTGCTGTGCTCTCCAAAAGAGCCGC
i chlSab2.chr8             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9606126 967 - 304825324 T
e taeGut2.chr1A            23692651 539 +  73657157 T
e rheMac3.chr8             61645207  98 + 150158102 I
e panTro4.chr8             54979182 1138 + 143986469 T

a score=1746.000000
s hg38.chr8_KI270814v1_alt    47261 3 +    141812 cct
s ponAbe2.chr8             59022147 3 + 153482349 cct
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8             58376890 3 + 146850525 cct
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53244297 3 + 139301422 CCT
i chlSab2.chr8             C 0 I 8
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9606126 967 - 304825324 T
e taeGut2.chr1A            23692651 539 +  73657157 T
e nomLeu3.chr16            48101372 1782 + 100215132 I
e rheMac3.chr8             61645207 98 + 150158102 I
e panTro4.chr8             54979182 1138 + 143986469 T

a score=37200.000000
s hg38.chr8_KI270814v1_alt    47264 248 +    141812 cggactcaagagggccacgttca-atgccaacctgacataaggtagtcacctctggagcacttgtggcctggggcaaaaacacagctggattgaaggaagagtcttccctgttcccagaggggcactg--actggaaatgagcatgaaggtggggtccctaaagggccacagaacgaggccctatgcaggtgtcggtacagactgccccaaaagccccctgagaagttggtcctggggtgtaagaggaaGG
s ponAbe2.chr8             59022150 248 + 153482349 gggacttgagagggccacgttca-atgcctaactgacataaggtagtcacctttggagcacttgtggcctgaggcgaaaacgcagctggggtgaaggaataatcttccctgttcccagaggggcgctg--actggaaatgaccatgaaggtggagtccctaaagggccagagaacgaggccctatgcaggcgtcagtacagactgtcccaaaagccccctgagaagttggccctggggcTTCAGAGGTagg
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8             58376893 245 + 146850525 tgaatttgagagggccatatttatttgccctcttgacataaggtagtaacctccagaggatttgggccttagggtaaaaactcccaaaggttagaggaagaat-ttcccccctcccataggggtactatttccaaaaaaaagcaagtaggtagggttcttaaaaggccacagaatgaagctctatgcaggt----gaacaaatggcttcaaaagccactgaagaactgggccct-gagcataacagtaagg
i macFas5.chr8             C 0 T 57552
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9606126 967 - 304825324 T
e taeGut2.chr1A            23692651 539 +  73657157 T
e nomLeu3.chr16            48101372 1782 + 100215132 I
e rheMac3.chr8             61645207  98 + 150158102 I
e chlSab2.chr8             53244300   8 + 139301422 I
e panTro4.chr8             54979182 1138 + 143986469 T

a score=6840.000000
s hg38.chr8_KI270814v1_alt    47512 78 +    141812 CACAGTGAagagcaggagtgaaagctgcttcagcactttggagcaggaaggaaaggaagtgagatacagttggaagag
s ponAbe2.chr8             59022398 78 + 153482349 cacggtgaagagcaggagtgaaagctgcttcagcactttggagcaggaagaaaagcaagcgagatacagttggaagag
i ponAbe2.chr8             C 0 T 5381
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9606126 967 - 304825324 T
e taeGut2.chr1A            23692651 539 +  73657157 T
e nomLeu3.chr16            48101372 1782 + 100215132 I
e rheMac3.chr8             61645207 98 + 150158102 I
e macFas5.chr8             58377138 57552 + 146850525 T
e chlSab2.chr8             53244300  8 + 139301422 I
e panTro4.chr8             54979182 1138 + 143986469 T

a score=1142.000000
s hg38.chr8_KI270814v1_alt    47590 13 +    141812 ggcgaagcgggca
s ponAbe2.chr8             59017095 13 + 153482349 ggcgaagcaggca
i ponAbe2.chr8             T 5381 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9606126 967 - 304825324 T
e taeGut2.chr1A            23692651 539 +  73657157 T
e nomLeu3.chr16            48101372 1782 + 100215132 I
e rheMac3.chr8             61645207 98 + 150158102 I
e macFas5.chr8             58377138 57552 + 146850525 T
e chlSab2.chr8             53244300  8 + 139301422 I
e panTro4.chr8             54979182 1138 + 143986469 T

a score=75359.000000
s hg38.chr8_KI270814v1_alt    47603 423 +    141812 acctgagggatggagtgcagggtttgaccttcgattctggatctcctccattagcaggcttccggggtggcgttgttgcctctctgccgatccttccttcgggtggggctgtcgactggcaccacggcctgtcagaccgtgggcggggggcgttgcaggcacagtgcggttcctag--tcttaggcatgctcacttgaggcgttcttcccctacctgtcgactgatctcagaggaaggagactgagctgctcagccctgccggtgtggctggcagggtgtcccgcattagcccatgtgcccgactcctgggatcttacagggaggctgctgatgtccaccttccagtgcttccgtccgttgggagcctgcccttccttggcgccggccggccgtgagcggttatcctccatagatagggttcaag
s ponAbe2.chr8             59017108 421 + 153482349 ac-tgagggatggagtgcagggtt-gac-ttcgattctgggtctcctctgttagcaggcttctggggtggcgttgttgcctctccgccgatccttcctttgggtggggctgttgactggtgccacggcctgtcagaccgtgggctgggggcattgcaggcacagtgtggttcctagagtcttaggtgtgctcacttgaggcattcttcccctgcccattgactgatctcagaggaaggagactgagctgctca-ccccgccagtgtggctgtcagggtgtcctgcattagcccacgtgcccgactcctgggatcttacagggaggctgctgatgtccaccttcctgcacttccgtccattgggagcctgcccttccttggcgccggccagccgtgagcagttatcctccacagatagggttcaag
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8             58319586 406 + 146850525 acctgagttaacaagtgcagggtttgac-------tcaaggtgtcatttgttggcaggctttcagggtggtgtttttgcctctcccctgatccttccttcgggtgggtctgtccactggtgccgcagcctgtcagcccatgggttttgggtgtcacatgagcagtgcagttcctagagtcttaggctt-----------gtgcccttttcttacccattgagtgttctcacaggaagggtatggagctgctaaacccaaccgttctggctgtta-ggtgtcctgcatgagcccacgcacatgattcctgggattttaccgggaagctgctgatgtccaccttccagctcttttgtcctttgggaggctgcccttttttggcactggcaggctgcgaacggttttcctccaaagaaacgtttcaac
i macFas5.chr8             T 57552 I 65206
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9606126 967 - 304825324 T
e taeGut2.chr1A            23692651 539 +  73657157 T
e nomLeu3.chr16            48101372 1782 + 100215132 I
e rheMac3.chr8             61645207  98 + 150158102 I
e chlSab2.chr8             53244300   8 + 139301422 I
e panTro4.chr8             54979182 1138 + 143986469 T

a score=14406.000000
s hg38.chr8_KI270814v1_alt    48026 93 +    141812 aaccgcccaaccgtcacctcatggtcatctgacattcctggtggtggt-agggggaccccctggttccatgctcacatcagaccagctacctCG
s ponAbe2.chr8             59017529 92 + 153482349 aaccgcccaaccatcacctcatggtcatctgacattcctggtggtgat--gggggaccccctggtaccatgctcacgtcagaccagctacctCG
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8             58385198 91 + 146850525 aaccacctgaccatcaactcatggacaactggcatttttggtggggatgaaaaagattttctg---tcctgatcacatctgactagctaactac
i macFas5.chr8             I 65206 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9606126 967 - 304825324 T
e taeGut2.chr1A            23692651 539 +  73657157 T
e nomLeu3.chr16            48101372 1782 + 100215132 I
e rheMac3.chr8             61645207 98 + 150158102 I
e chlSab2.chr8             53244300  8 + 139301422 I
e panTro4.chr8             54979182 1138 + 143986469 T

a score=8987.000000
s hg38.chr8_KI270814v1_alt    48119 61 +    141812 -AGTGACAGGAACGTCTGACAGGATTGCACATGTGGCAGAAG-AGCATCCGAGAAGGATGAAG
s ponAbe2.chr8             59017621 61 + 153482349 -AGTGACAAGAACGTCTGACAGGATTGCACGTGTGGCAGAAG-AGCATCAGAGAAGGATGAAG
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8             58385289 62 + 146850525 -tataacaGAAATAGCAAACAAGATTGAATGTCTGACAGAAGAAACATCTGTAACGGTTGAAT
i macFas5.chr8             C 0 C 0
s monDom5.chr5              9605159 63 - 304825324 AGAGAAAAGAGGGATCTCAGAGCATGGAATGTTAGAGAAAAGAGGGATCTTAGGACATGGAAT
i monDom5.chr5             T 967 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e nomLeu3.chr16            48101372 1782 + 100215132 I
e rheMac3.chr8             61645207 98 + 150158102 I
e chlSab2.chr8             53244300  8 + 139301422 I
e panTro4.chr8             54979182 1138 + 143986469 T

a score=41807.000000
s hg38.chr8_KI270814v1_alt    48180 166 +    141812 GTTTGGCAGAAGAAACACCTGCCAGATCAGACGTGAATGTGTGGCAGAAAGCCCATCTGGGAAGATTGCACACTGGGCAGAAGGAAGAGCTAAGAACGTTGTACAGACAGCGGAAGGAGTGCCTGTGGAGATTGCCCGGTGGGCGGTGGTAGCATCTGAGAGGATT
s ponAbe2.chr8             59017682 166 + 153482349 GTTTGTCAGAAGAAACACCTGCCAGATCAGATGTGAATGTGTGGCAGAAGGCCCATCTGGGAAGATTGCACACTGGGCAGAAGGAAGAGCTAAGAATGTTGGATGGACAGCAGAAGGAGTGCCTCCGGAGATTGCCCGGTGGGCGGCGGTAGCATCTGAGAGGATT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48103154 161 + 100215132 GTTTGGCAGAAGAAACCTCTG-----TCAGATGTGAACGTGTGACAGAAGGACCATCCGGGAAGATTGCACACTGGGCAGAAAGAAGACTTAAGAACATTGCATGGACAGCAGAAGGAGTGCTTCGGGAGATTGCCTGGTGGGCAGCGGGAACACCTGAGATGACT
i nomLeu3.chr16            I 1782 T 1943
s macFas5.chr8             58385351 134 + 146850525 GTTTGG-AGAAGAAACATCTG-----ACAACCTCGCATGTTTGGAAGTAGAAACAACTGATTAGACTGCATGTTAAAAAGGAAAAGCATCTGAAAAGTTTGAACATTTGGCAGAA--AATACATCTGAA------------------------ATTTGAAATGTTT
i macFas5.chr8             C 0 C 0
s monDom5.chr5              9605222 161 - 304825324 GTTAGAGAAAAGAGGGACCTT-----AGAACACAGAATGTTAGAGAAAAGAGGGATCTCAGAGCATGGAATGTTAGAGAAAAGAGGGACCTTAGAACACGGAATGTTAGAGAAAAGAGGGATCTCAGAGCATGGAATGTTAGAGAAAAGAGGGATCTTAGGACATG
i monDom5.chr5             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e rheMac3.chr8             61645207  98 + 150158102 I
e chlSab2.chr8             53244300   8 + 139301422 I
e panTro4.chr8             54979182 1138 + 143986469 T

a score=36586.000000
s hg38.chr8_KI270814v1_alt    48346 322 +    141812 GCGGGGTGGGAGGGAGGATGAGC----------------TGGGAAGGATGCAAGGCCTGGGGAGGCAACATGTGA-----------------AGACGATTAAATATGTGGCAGGAGAAACACCTGAGAAGATGGGATGCTTGGCAAGGGGAACAAGGCCCGGAATGGAGTGTTCGGGAGAAGAGACGCTTAGGGAGATTGCATGTGTGGCAGAAGGAACACGTGAGAAGGTTGCCATGGTGGACAGCAGAAAAATTGCAGCCGATGGCACAGCGGTGGGGAGG--------AAAACATAGGAAGCTTGCAAGCGCGTGGCCTGCGAAAGAAGCATCTGAAGAGATGGCATGTCTGGC------------------------AGAGGA
s ponAbe2.chr8             59017848 322 + 153482349 GCGGTGTGGGAGGGAGGACAAGC----------------TGGGAAGGATGCAAGGCCTGGGGAGGCAAAATGTGA-----------------AGACGATTAAATATGTGGCAGGAGAAACACCTGAGAAGATGGGATGCTTCGCAAGGGGAACAAGGCACAGAGTGGAGTGTTTGGGAGAAGAGACGCTTAGGGAGATTGCATGTGTGGCAGAAGGAACATGTGAGAAAGTTGCCATGGTGGACAGCAGAAAAATTGCAGCCGATGGCACAGTGGCAGGGAGG--------AAAACATAGGAAGCTTGCAAGTGCGTGGCCTGCAAAAGAAACATCTGAAGAGACGGCATGTCTGGC------------------------AGAGGA
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8             58385485 275 + 146850525 ------------------------------------------------GGCAA--------AAAGCCACATCTGA-----------------CAAAGGTTGCATGTTTGGCAGAAGAAACATCTGACAAATTAGAACGTTAGACAAAAGAAACACTTGGCACAATTGATTGTGTGGCAGAAGAAACATTTTAGAAAATTTCAGGTTTAGCAGAAGGAACATTTAAGAAGACTG-CAGGTCTGGCAGAAAAGAAA-------------CATATT------------------AAAAGATAGTATGGTTG-------ACAGCTTGCAAAATAGACATCTTAAACAATAGAATATTTGACATAAGTCATCTGACAAAAAATGTTAGAAGA
i macFas5.chr8             C 0 C 0
s monDom5.chr5              9605383 347 - 304825324 -GAATGTTAGAGAAAAGAGGGACCTTAGAACATAGAATGTTAGAGAAAAGAGGGACCTTAGAACACAGAATGTTAGAGAAAAGAGGGATCTCAGAGCATGGAATGTTAGAGAAAAGAGGGACCTTAGAACACGGAATGTTAGAGAAAAGAGGGATCTCAGAGCATGGAATGTTAGAGAAAAGAGGGATCTTAGGACATGGAATGTTAGAGAAAAGAGGGATCTCAGAGCATGG-AATGTTAGAGAAAAGAGGGATCTTAGAACACGGAATGTTAGAGAAAAGAGGGATCTTAGAACATAGAATGTTAG--------------AGAAAAGAGGGACCTTAGAACACGGAATGTTAGAG------------------------AAAAGA
i monDom5.chr5             C 0 n 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e nomLeu3.chr16            48103315 1943 + 100215132 T
e rheMac3.chr8             61645207  98 + 150158102 I
e chlSab2.chr8             53244300   8 + 139301422 I
e panTro4.chr8             54979182 1138 + 143986469 T

a score=4748.000000
s hg38.chr8_KI270814v1_alt    48668 33 +    141812 CACATTGGGCAAGATTCCACGTTTGGCAGCAGG
s ponAbe2.chr8             59018170 32 + 153482349 CACATTGGGCAAGATTT-GCATTTGGCAGCGGG
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8             58385760 33 + 146850525 AACATTTGACAAGTTTGTATGTTTGGCAGAAGG
i macFas5.chr8             C 0 T 1884
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730  0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e nomLeu3.chr16            48103315 1943 + 100215132 T
e rheMac3.chr8             61645207 98 + 150158102 I
e chlSab2.chr8             53244300  8 + 139301422 I
e panTro4.chr8             54979182 1138 + 143986469 T

a score=46648.000000
s hg38.chr8_KI270814v1_alt    48701 547 +    141812 CCCGTGagcggcgacagacgcgtatgggcctgtggcaacctcggttcctgcctcctgagaagaaagacatcgagtggcacacggtagagtgagagaccgaggcacgcattagagcaggggcgaaagttcctgaaatggtatcgtggcaggagccaaaggaagtcaaggaggcttggaagaggcccaggtgggcggtgacctgagaggtggagtacaggactggaccttggactcagggtctcccgcgtcggcagcatcgctgcctgtcctctgatgcttccctcggcggggaagagggggctgttcactagcacagtggcctgtcaccatctcatgggggtgcggaggcgccgtgtgcttactggagttgttctcatgctctcttgaggcgttcctcccacaagcagatgaatgtgcccaggggaaaacatcccagatcagtgaaccttccaccagtttgcctctcagggtgcacgtgtgagcccattcacccaactcccgaggtgtgctggggaggcttctgaggttcgtgactgctgtgggggag
s ponAbe2.chr8             59018202 547 + 153482349 CCTGTGAGcggcggcagaggcatatgggcctgcggcaacctcagttcctgcctcctgagaagaaagacattgagtggcacacggtagagtgatagactgaggcacgcatgagagcaggggcgaaagttcctgaaacggtattgtggcaggagccaaaggaagtcaaggaggcttggaagaggcccaggtgggcggcgacttgagaggtggagtgcaggactggaccttggactccgggtctcccgcgttggcagcatcgctgcctgtcccctgatgcttcccttggtggggaagagggggctgttcactggcacagtggcctgtcacaacctcgtgtgggggcggaggcgctgtgtgcttactggagttgtttgcatgctctcttgaggcattcctcccacaagcagacgaatgtgcccaggggaaaacatcctagatcagtgaacctcccgccagtttgcctctcagggcgcatgtgtgagcccatttacccaactcccaaggtgtgctggggaggcttctgaccttcgtgactgctgtggaggag
i ponAbe2.chr8             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730   0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e nomLeu3.chr16            48103315 1943 + 100215132 T
e rheMac3.chr8             61645207  98 + 150158102 I
e macFas5.chr8             58385793 1884 + 146850525 T
e chlSab2.chr8             53244300   8 + 139301422 I
e panTro4.chr8             54979182 1138 + 143986469 T

a score=17129.000000
s hg38.chr8_KI270814v1_alt    49248 119 +    141812 ggggactgcctttccctggtgctgcctgtgatcagtgatttctctagagagtctgcttcgtgaccaccgggccatcaccttgcggctgcctgatgtttactggtggtggggaaccctct
s ponAbe2.chr8             59018749 119 + 153482349 ggggactgcctgtccctggcgctgcctgtgatcagtgatttttctagcgagtctgcttcgtgaccaccgggccatcaccttgcggctgcatgatgtttaccggtggtggggaaccctct
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8             58383909  98 + 146850525 ggagtctgccttttactggtg------gtgaccaatgattattttagagag--------------acctgaccatcacttcatggttgcctgacattc-ctagtgagaagaggccctct
i macFas5.chr8             T 1884 I 202
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730   0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e nomLeu3.chr16            48103315 1943 + 100215132 T
e rheMac3.chr8             61645207  98 + 150158102 I
e chlSab2.chr8             53244300   8 + 139301422 I
e panTro4.chr8             54979182 1138 + 143986469 T

a score=2728.000000
s hg38.chr8_KI270814v1_alt    49367 28 +    141812 cgggccccgctcCACACGTGTGACTGAG
s ponAbe2.chr8             59018868 28 + 153482349 cgggccccgctcCACACGTGTGACTGAG
i ponAbe2.chr8             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730  0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e nomLeu3.chr16            48103315 1943 + 100215132 T
e rheMac3.chr8             61645207 98 + 150158102 I
e macFas5.chr8             58384007 202 + 146850525 I
e chlSab2.chr8             53244300  8 + 139301422 I
e panTro4.chr8             54979182 1138 + 143986469 T

a score=42286.000000
s hg38.chr8_KI270814v1_alt    49395 279 +    141812 AGGGACACCTGACAGGATTGAACGC-GTGGCAGAT---CATCCGACGAGATGGAGTGTCTGGTGGAAGGAACATCTGACAGCCCTGAGCGTGTGGCAGAGGGAACATCTAAGCAGACTGCAGCGATTTCAGAAGGAACGGCTAAGAACATCGCATGGTCAGCAGGAGGAAACCTTAGGGTAGGGTGATTGCAGGGGTGCTGGGGGGCAAGGGAACCCGTGAGAAGACTGCGGGATCAGCAGTTGGATGCCCTAGGGAGATTGCAAGGCCTGCCCAAGAGACAT
s ponAbe2.chr8             59018896 279 + 153482349 AGGGACACCTGACAGGATTGAACGC-GTGGCAGAT---CATCCGACGAGATGGAGTGTCTGGTGGAAGGAACATCTGACAGCCCTGAGCGTGTGGCAGAGGGAACATCTAAGCAGACTGCAGCGATTTCAGAAGGAACGACTAAGAACATCGCATGGTCAGCAGGAGGAAACCTTAGGGTAGGGAGATTGCAGGGGAGCTGGGGGACAAGGGAACCCGTGAGAAGACTGCGGGATCAGCAGTTGGATGCCCTAGGGAGATTGCAAGGCCTGCCTAAGAGACAT
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8             58384209 269 + 146850525 AAAGACATCTGACAAGATTGAATGCTGGGGCAAAGAAACATCTGATAAAATTTAACATGTGGCAGGAGAAACAACTGACAA--TTGAATGGTTGGCAGAGGGAACATTTAAGAAGACTGCACATTTGGCAGAAGAAACATCTGAGAAGATTGCATGGTCGACAACA-GAAACATT----TAAACAGATTTCATAG----TGGGCAGAAAGAGTATCC--AAGAAGACTGCATGGTTGGCAGAGAGAAAACCT-GAAAATGTGCAGGGCCTGCAAAAGAAACAT
i macFas5.chr8             I 202 T 5884
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730   0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e nomLeu3.chr16            48103315 1943 + 100215132 T
e rheMac3.chr8             61645207  98 + 150158102 I
e chlSab2.chr8             53244300   8 + 139301422 I
e panTro4.chr8             54979182 1138 + 143986469 T

a score=3243.000000
s hg38.chr8_KI270814v1_alt    49674 35 +    141812 CTGGGTAGAGGAAGTATTGGGCCCATGGTGCGCCA
s ponAbe2.chr8             59019175 35 + 153482349 CTGGGTAGAGGAAGTATTGGGCCCATGGTGCACCA
i ponAbe2.chr8             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730  0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e nomLeu3.chr16            48103315 1943 + 100215132 T
e rheMac3.chr8             61645207 98 + 150158102 I
e macFas5.chr8             58384478 5884 + 146850525 T
e chlSab2.chr8             53244300  8 + 139301422 I
e panTro4.chr8             54979182 1138 + 143986469 T

a score=77350.000000
s hg38.chr8_KI270814v1_alt    49709 503 +    141812 GACAAAACTGAATGCTTGTCAGGGGAAGAAGTGGACGCAACTGGCTGTTTGGCAGAGGGAACCCTCAGGTAGATTGCACGTTTGGCAGAAGGCCCAAGTGTGAAGATGACATGGTAGACAGCAGAAACCCTTTAGCAGGTCGCACGGTGGGCAGAAGGAACCTCTGAGCAGATTCCATGGTGGGCAGACGGAATGCCTAGGAAGAGTGCGTGGCTTGCAAAGGAAG-------CATCTGGAAAGAGGGAACATCTGGGAGAGAAAACATCCACCAAGATGGAGCGTTTggcggtagggatgtcagcggtggcagatccataggggcctgcaggcagcaacccgagctctcacctcatcagacggagtttaactgaggggcgtgaggcggagtgaaagagaccgaggcctctttgagcgcaggagtgcaggtctcccagatgataccagaacagaaagacgaggcagtaaggtatacttggaagagggccatgtgggcaactggagaggtc
s ponAbe2.chr8             59019210 503 + 153482349 GACAAGACTGAGTGCTTGTCAGGGGAAGAAGTGGACGCAACTGGCTGTTTGGCAGAAGGAACACTCGGGTAGATTGCACGTTTGGCAGAAGGCCCAAGTGCGAAGATGACATGGTAGACAGCAGAAATCCTTTAGCAGGTCGCACGGTGGGCAGAAGGAACCTCTGAGCAGATTCCACGATGGGCAGACGGAATGCCTAGGAAGAGTGCGTGGTGTGCAAAGGAAA-------CATCTGGAAAGAGGGAACATTTGGGAGAGAAAACATCCGCCAAGATGGAGCATTTGGCGGTAGGGAagtcagcggtggcagatccataggggcctgcacgcagcaacccgagctcttgcctcgtcagagggagttcaactgagggttgtgaggtgtagtgaaagagaccgaggccactttgagcacgggagtgcgggtctcccagatagtaccagagcagaaaggcgaggcagtaaggtatacttggaagagggccatgtgggcaactggagaggtc
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8             58378594 497 + 146850525 GACAAGACTGAATGTTTGGCGGAAGAACATCT-GACATATTTGAATTTTTGGCAGAAGAAACATCTA---AGATGTAGTATTTGGCAGAAGAGACATCTAAGAGCATTGCGTGGT---CAGCAGGAACCCTGAGGGAGATGGCATGGTAGGCAGAGGAAGTATCTAAAAAGATTGCACAGTCTGCATAAGGATGACCTAGGAAGAGTGCATGGCCTGCAAAAGAAAAGATTCTAATCTGAAAAGATTAAATATTTGGCACGGGAAACATCTGATAAGGTTCAATGTTTGTTAGTAAAAATgttagtggtggcagatttgcatgtgtc----ggcagcaacctgaattgcctccccagaagaaagaattcaacggagggatataaggcagagtg--agaggcaaaggcaagttttagagcaggagtgaaagtttcttaaaaagcattagagcagaaacaaaagaaaataaagtacatgtggaagaaagcaaagtgggtggcttgagagatc
i macFas5.chr8             T 5884 I 30
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730   0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e nomLeu3.chr16            48103315 1943 + 100215132 T
e rheMac3.chr8             61645207  98 + 150158102 I
e chlSab2.chr8             53244300   8 + 139301422 I
e panTro4.chr8             54979182 1138 + 143986469 T

a score=5526.000000
s hg38.chr8_KI270814v1_alt    50212 65 +    141812 gggggcacgctttgttcgacctttgaggcgaggtctcacacattggcaggcttccaagagccagg
s ponAbe2.chr8             59019713 65 + 153482349 aggggcatgcttcattcgacctttgaggggaggtctcacacattggcaggcttccaagagccagg
i ponAbe2.chr8             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730  0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e nomLeu3.chr16            48103315 1943 + 100215132 T
e rheMac3.chr8             61645207 98 + 150158102 I
e macFas5.chr8             58379091 30 + 146850525 I
e chlSab2.chr8             53244300  8 + 139301422 I
e panTro4.chr8             54979182 1138 + 143986469 T

a score=3897.000000
s hg38.chr8_KI270814v1_alt    50277 24 +    141812 ggttgcattgcttcctcccctgag
s ponAbe2.chr8             59019778 24 + 153482349 ggttgcatcacttcctcccctgag
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8             58379121 23 + 146850525 ggttgtgtta-tttttcccctgat
i macFas5.chr8             I 30 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730  0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e nomLeu3.chr16            48103315 1943 + 100215132 T
e rheMac3.chr8             61645207 98 + 150158102 I
e chlSab2.chr8             53244300  8 + 139301422 I
e panTro4.chr8             54979182 1138 + 143986469 T

a score=2790.000000
s hg38.chr8_KI270814v1_alt    50301 11 +    141812 ccttttctcag
s ponAbe2.chr8             59019802 11 + 153482349 ccttttcgcag
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48101372 11 + 100215132 CCttttcacgt
i nomLeu3.chr16            T 1943 C 0
s macFas5.chr8             58379144 11 + 146850525 tcttcccttag
i macFas5.chr8             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730  0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e rheMac3.chr8             61645207 98 + 150158102 I
e chlSab2.chr8             53244300  8 + 139301422 I
e panTro4.chr8             54979182 1138 + 143986469 T

a score=417842.000000
s hg38.chr8_KI270814v1_alt    50312 501 +    141812 ggtgggccatccacatgggcagtggcctgtcatcacctgggagggaccgcaggcgtggcgtgtttcctggagtcataggggcgctcacatgaggcgtgcctcccttggca-gtcggatgttgcctggggagggtcgtaggacagtaaaacccggccggtttgcctgtgagtgtgcaagcatgagccccgtcacgcgccccctgagatcttctcagggagctgctaatcgccaccttccggggtttctgtctgtctgggggaccgcccgtccctggcaccggctcccggcaatcatttattatttgagacaggtagtttaatggcagcctgacccgtcgcctcctggtcgcctgatgtgtctggtggggtgtgggcgtggccctctcctgcgctgctcctgtctgaccagccgcccacggtaacaCAGAAACATCTGGCAGGATGGAGTGGTTGGCGGAAGACACATCTGACGAGATCGAATGTTTTGCAGAAGAGCCATGTG
s ponAbe2.chr8             59019813 501 + 153482349 ggtgggcaatccacatgggtggtggcctgtcgtcacctggcagggaccgcaggcgcggcgtgtttcctggagtcataggggcgctcacttgaggagtgcctccctcagca-gttggatgttgcccggggagggtcataggacagtaaaacccggccggtttgcctgtgagtgcgcaagcataagccccctctcccgccccctgagatcttcttagggagctgctaatcgccaccttccagggtttctgtctgtctgggggactgcccgtccctggcgccagctcccagcaatcatttgttatttgagagaggcagtttaacggcggcctgacctgtcacctcctggtcacctgatgtgtctgatggggtgtgggcgtggccctctcctgcactgctcctgtctgaccagctgcccccggtaacaCAGAAACATCTGGCAGGATGGAGTGGTTGGCAGAAGAAACATATGACGAGATCGAATGTTTTGCAGAAGAGCCATGTG
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48101383 500 + 100215132 ggtgtgctgtccacattggctgtgtcctgttgacagctgggaggggccataggcatggcgtttttcctgcagttgcaggcactctcacttgaggagtgtctttttcggca-gtaggatgttgcccggggaaggtcatagggtagtgaaacctggccggtgtgcctgtgaggaggtgtgtgtgagccccctcgcctgcctcctgataccttcttgaggagctgctcatcaccaccttctgggatttctgtctgttgggggcactg-ccgtccctggcgccccctcgcagccatcatttcttatttgagaaaggcaatttaacgatggcctgccccgtcacttcctggtcacctgacgtatctggtggggtgtgggctagaccctcttaggcgctactcctgtgtgtccagccatccacagtaacaCGGAAACATCTGGCAGGATGGAATGGTTGGTGGAAGACACTTCTGATGAGGTCGAATGTTTTGCAGAAGAGCCGTGTG
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61645305 501 + 150158102 ggtgggctgtccacatcggcggtgtcctgttgacagctgggaggggccacaggcatgacatttttcctgcagttgtaagtgctctcacttgaggcgtgcctttttcggca-gtaggatgttgcctggggagggtcatagggcagtaaaacctggccagtatgcctgtgaggaggtgtgtgtgagctcccttgtccgtctcctgagatcttcttggggagctgctcatcaccaccttctggaatttctttctgttgtggggactgcccatccctggtgacctctcccagccatcttttcttattttagaatggcaatttaacaacggcctgatccgtcatgtcctggtcacctgacatatctggtggcgtgtgggctagaccctctcctgcactgctcctgtgtgtccagccacccacagtaacaTGGAAACATCTGGCAGGATGAAATGTTTGGTGGAAGACACTTCTGATGAGGTCGAATGTTTTGCAGAAGAACTATGCG
i rheMac3.chr8             I 98 C 0
s macFas5.chr8             58379155 489 + 146850525 ggtgtgctgtccatacatgcagtggcctgccagcacctgggagactgcatttgcagtgtgttttt--tggagttgtatgcctgctcacttaaggtattgttttttcaaaatgtaaggtgttctcagagacaggtcacaaatcaattaaa-atcaccatgttgcctcttactgcacacatctaagcccaccagctcaaatcctgagatattattatgaagctgctgatcaccaattttagatgtttctatttattg-gaaaactgcctttccctga-----gctagctgcaactaattattattttagaaaggtagtttaataaccacctcatct-tcaactcatggttttcttatattcctggtgaag-gtgggagcggggcttttctgtcctgctcatatctgactaggtacctaATGT--CATGGGAACATCGGACAAGATTGAATGTTTGGCAGAAGAAACATCTGATAAGTTTGCACGTTAAGCAGAATAAACATCTG
i macFas5.chr8             C 0 T 60803
s chlSab2.chr8             53244308 501 + 139301422 ggtgggctgtccacatcggcggtgtcctgttgacagctgggaggggccacaggcatgacgtttttcctgcagttgtaagtgctctcccttgaggcgtgcctttttcggca-gtaagatgttgcctggggagggtcatagggcagtaaaacctggccagtatgcctgtgaggaggtgtgtgtgagctcccttgcccgtctcctgagatcttcttggggagctgctcatcaccaccttctggaatttctgtctgttgtggggactgcccatccctggcgacccctgccagccatcttttcttattttggaatggcaatttaacagcggcctgacctgtcatgtcctggtcacctgacatctctggtggggtgtgggctaggccctctcctgcactgcttctgtgtgtccagccacccatggtaacaTGGAAACATCTGGCAGGATGGAATGGTTGATGGAAGACACTTCTGATGAGGTCGAATGTTTTGCAGAAGAACTATGTG
i chlSab2.chr8             I 8 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730   0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e panTro4.chr8             54979182 1138 + 143986469 T

a score=58234.000000
s hg38.chr8_KI270814v1_alt    50813 53 +    141812 ACGGGATCCGTGGTTTGGCAGAGGAGACATGCGAGAAGACGGAACGTTTTGTC
s ponAbe2.chr8             59020314 53 + 153482349 ACCGGATCCCTGGTTTGGCAGAGGAGACATGCGAGAAGACGGAACGTTTTGGC
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48101883 53 + 100215132 ATCGGATCCCTGGTTTGGCAGAGTAGACATGTGAGAAGACTGACAGTTTCGTC
i nomLeu3.chr16            C 0 I 25
s rheMac3.chr8             61645806 53 + 150158102 ATTGGATCCCTGCTTTGACAGAGTAGGCATGCGAGAAGACTGAACATTTCATC
i rheMac3.chr8             C 0 T 2322
s macFas5.chr8             58318841 53 + 146850525 ATTGGATCCCTGGTTTGACAGAGTAGGCATGCGAGAAGACTGAACATTTCATC
i macFas5.chr8             T 60803 I 2
s chlSab2.chr8             53244809 53 + 139301422 ATTGGATCCCTGGTTTGACAGAGTAGGCATGCGAGAAGACTGAACGTTTCATC
i chlSab2.chr8             C 0 T 2331
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730  0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e panTro4.chr8             54979182 1138 + 143986469 T

a score=21380.000000
s hg38.chr8_KI270814v1_alt    50866 38 +    141812 CGAATAGACATCTGGCAGGGTGGAACGGAGAGAACAGG
s ponAbe2.chr8             59020367 38 + 153482349 TGAAGAGACATCTGGCAGGGTGGAACGGAGAGAACAGG
i ponAbe2.chr8             C 0 C 0
s rheMac3.chr8             61643537 38 + 150158102 CGAAGAGACATCTAGCAGGGTGGAACAGAGAGAACAGG
i rheMac3.chr8             T 2322 C 0
s macFas5.chr8             58318896 24 + 146850525 ---TGAAACATCTTATAAGGTGGAAT-----------G
i macFas5.chr8             I 2 C 0
s chlSab2.chr8             53242531 38 + 139301422 CGAAGAGACATCTGGCAGGGTGGAACAGAGAGAACAGG
i chlSab2.chr8             T 2331 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730  0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e nomLeu3.chr16            48101936 25 + 100215132 I
e panTro4.chr8             54979182 1138 + 143986469 T

a score=39732.000000
s hg38.chr8_KI270814v1_alt    50904 39 +    141812 TATGGTGGAGAGAACGTCTGAGAAGGTCGCAGGATTCGC
s ponAbe2.chr8             59020405 39 + 153482349 TATGGTAGAGAGAACGTCTGAGAAGCTTGCAAGATTCGC
i ponAbe2.chr8             C 0 I 3
s nomLeu3.chr16            48101961 39 + 100215132 TATGGCAGAAAGAACGTCTGAGAAGCTCACGCGATTTGC
i nomLeu3.chr16            I 25 C 0
s rheMac3.chr8             61643575 39 + 150158102 TGTGGCAGAGAGAAAGTCTGAGAAGCTTGCATGATTCGC
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58318920 39 + 146850525 TGTGGCAGAAAGAACATCTTAGAAGCTCATGTAGTTTGC
i macFas5.chr8             C 0 I 60685
s chlSab2.chr8             53242569 39 + 139301422 TGTGGCAGAGAGAACGTCTGAGAAGCTTGCACGATTCGC
i chlSab2.chr8             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730  0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e panTro4.chr8             54979182 1138 + 143986469 T

a score=1910.000000
s hg38.chr8_KI270814v1_alt    50943 2 +    141812 AG
s ponAbe2.chr8             59020447 2 + 153482349 AG
i ponAbe2.chr8             I 3 C 0
s nomLeu3.chr16            48102000 2 + 100215132 AG
i nomLeu3.chr16            C 0 T 2329
s rheMac3.chr8             61643614 2 + 150158102 AG
i rheMac3.chr8             C 0 I 2339
s chlSab2.chr8             53242608 2 + 139301422 AG
i chlSab2.chr8             C 0 I 3
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730 0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e macFas5.chr8             58318959 60685 + 146850525 I
e panTro4.chr8             54979182 1138 + 143986469 T

a score=4017.000000
s hg38.chr8_KI270814v1_alt    50945 10 +    141812 GAGCATCGGG
s ponAbe2.chr8             59020449 10 + 153482349 GAGCATCAGG
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48099673 10 + 100215132 GAGTATTGGG
i nomLeu3.chr16            T 2329 C 0
s chlSab2.chr8             53242613 10 + 139301422 GAGCATCGGT
i chlSab2.chr8             I 3 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730  0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e rheMac3.chr8             61643616 2339 + 150158102 I
e macFas5.chr8             58318959 60685 + 146850525 I
e panTro4.chr8             54979182 1138 + 143986469 T

a score=11349.000000
s hg38.chr8_KI270814v1_alt    50955 17 +    141812 AAAAGATTGCCTGCTTG
s ponAbe2.chr8             59020459 17 + 153482349 AAAAGATTGCCTGTTTG
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48099683 17 + 100215132 AGAAGATTGCCTGTTTG
i nomLeu3.chr16            C 0 C 0
s macFas5.chr8             58379644 17 + 146850525 AGATGATTTCATGTTTG
i macFas5.chr8             I 60685 C 0
s chlSab2.chr8             53242623 17 + 139301422 AGAAGATTGCCTCTTTG
i chlSab2.chr8             C 0 I 2318
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730  0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e rheMac3.chr8             61643616 2339 + 150158102 I
e panTro4.chr8             54979182 1138 + 143986469 T

a score=41235.000000
s hg38.chr8_KI270814v1_alt    50972 46 +    141812 CCCGAAGGAATGGCAAGTTCCAAAGGTCAGAGGCTCGCGTGAACTC
s ponAbe2.chr8             59020476 46 + 153482349 CCCGAAGGAACGGCAAGTTCCAAAGGTCAGAGGCTCGCGTGAACTC
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48099700 46 + 100215132 CCCGAAGGAACTGCAAGTTCCAAAGGTCAGAGGCTCGCGTGAACTC
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61645955 46 + 150158102 TCTGAAGGAACGTCAAGTTCCAAAGGTCAGAGACTCACATGAAGTC
i rheMac3.chr8             I 2339 I 12
s macFas5.chr8             58379661 46 + 146850525 ACAGAAGGAAGAGCAAGTGCAAAATGTTGTATGCTTGATTAATCTT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53244958 46 + 139301422 TCTGAAGGAACGTCAAGTTCCAAAGGTCAGAGACTCACATGAAGTC
i chlSab2.chr8             I 2318 I 1
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730  0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e panTro4.chr8             54979182 1138 + 143986469 T

a score=-236.000000
s hg38.chr8_KI270814v1_alt    51018 12 +    141812 TGTCGGGTTCG-A
s ponAbe2.chr8             59020522 12 + 153482349 TGTCGAGTTCA-G
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48099746 12 + 100215132 TGTTGGGTTCA-G
i nomLeu3.chr16            C 0 C 0
s macFas5.chr8             58379707 12 + 146850525 TGTAGTGTTTAT-
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53245005 11 + 139301422 TTTCGTTTTAG--
i chlSab2.chr8             I 1 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730  0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e rheMac3.chr8             61646001 12 + 150158102 I
e panTro4.chr8             54979182 1138 + 143986469 T

a score=212948.000000
s hg38.chr8_KI270814v1_alt    51030 229 +    141812 GAGCAG-CTCAGTGTTGCTGGTGGCAAGAGTGTGGTACGGGAATGGTTGGGTGTGGTTTGAATGTCTAGAAAAGGCGAGC-TGAGGGTAGATTTTTGAGCAGTCCAGAGCAGAAGGGGTAGAGGATATATTCTGTGGGCCACGGCCACATTCTCAGGATGCTCGTGGCTGTAAATAGTAGATGACCCA-----AGTAAGAGCGGCTGAAGCCATAGGCACCAGAATTGTGTCAGCA
s ponAbe2.chr8             59020534 229 + 153482349 GAGCAG-CTCAGTGTTGCTGGTGGCAAGAGTGTGGTAAGGGAGTGGTTGGGCATGGTTTGAATGTCTAGAAAAGGCAAGC-TGAGGGTAGATTTTTGAACAGTCCACAGCAGGAGGGGTAGAGGATATATCCTGTGGGCCACGGCCACATTCTCAGGATGCTCATGGCTGTAAATAGTAGATGACCCA-----AATAAGAGCGGCTGAAGCCATAGGCACCAGAGTTGTTTCGGCA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48099758 229 + 100215132 GAACAG-CTCAGTGTTGCTGGTGGCAAGAGTGTGGTACCGGAGTGGTTGGGCGTGGTTTGAATGTCTAGAAAAGGCGAGC-TAAGGGTAGATTTTTGAACAGTCCAGAGCAGGAGGGATAGAGGATATATTCTGTGGGCCATGGCCACATTCTCAGGATGCTCGTGGCTGTAAATAGTAGATGACCCA-----AGTAAGAGTGGCTGAAGCCATACGCACCAGAGTTGTGTCAGCA
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61646013 229 + 150158102 GAACCG-CACATTGTTGCTCTTGGAAAGAGTGTGGTACTGATGTGGTTGGGCATGATTTGAATGTCTAGAAAAAGTGAGC-TTAGGGAAGATTTTTGAGCAATCCAGAGCAGGAGGGGTAGAGGATATATTTTGCGGGCCATGGCCACATTCTCAGGATGCTGTTGGCTATAAATAGTAGATGACCCA-----AGTAAGAGCGACTGAAGCCATAGGTACCAGAGTTGTGTTGGCA
i rheMac3.chr8             I 12 C 0
s macFas5.chr8             58379719 222 + 146850525 GAGCAGTTACACT-TTGCTAGTGGAAATAATGTGGCATGGGAGTGGT-----GTGGACTGAATACCTACATAAGGCAAGC-TTCAGAAAGCCTTTT-AATAGTATATA----AATGAGTAGAT--CTTATTCTGTGGGCCAGGGAAAAATTCTCTGAATACTTCTGGCTGTGAATATTAGCTGACCTAACTATAATAACAATGACTAAAACCATGGGAACCAAAGTTGTTTTGGTG
i macFas5.chr8             C 0 I 20
s chlSab2.chr8             53245016 230 + 139301422 GAACCG-CACATTGTTGCTCTTGGAAAGAGTGTGGTACTGATGTGGTTGGGCATGATTTGAATGTCTAGAAAAAGTGAGCTTTAGGGAAGATTTTTGAGCAGTCCAGAGCAGGAGGGGTAGAGGATATATTTTGCAGGCCACGGCCACATTCTCAGGATGCTTTTGGCTGTAAATAGTAGATGACCCA-----AGTAAGAGCGACTGAAGCCATAGGCACCAGAGCTGTGTTGGCA
i chlSab2.chr8             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730   0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e panTro4.chr8             54979182 1138 + 143986469 T

a score=25939.000000
s hg38.chr8_KI270814v1_alt    51259 30 +    141812 TCGTCGTGTCATGCTCATGTTTTCCCTTCC
s ponAbe2.chr8             59020763 30 + 153482349 TCGTCGTGTCACGCTCACGTTTTCCCTTCC
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48099987 30 + 100215132 TCGTCGTGTCACGCTCACGTTTTCCCTTCC
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61646242 30 + 150158102 TCATCATGTCACGCTCACGTTTTCCCTTCC
i rheMac3.chr8             C 0 C 0
s chlSab2.chr8             53245246 30 + 139301422 TCGTCATGTCACGCTCACATTTTCCCTTCC
i chlSab2.chr8             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730  0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e macFas5.chr8             58379941 20 + 146850525 I
e panTro4.chr8             54979182 1138 + 143986469 T

a score=4365.000000
s hg38.chr8_KI270814v1_alt    51289 3 +    141812 AGC
s ponAbe2.chr8             59020793 3 + 153482349 AGC
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48100017 3 + 100215132 AGC
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61646272 3 + 150158102 AGC
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58379961 3 + 146850525 AGC
i macFas5.chr8             I 20 C 0
s chlSab2.chr8             53245276 3 + 139301422 AGC
i chlSab2.chr8             C 0 T 2323
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730 0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e panTro4.chr8             54979182 1138 + 143986469 T

a score=755.000000
s hg38.chr8_KI270814v1_alt    51292 1 +    141812 T
s ponAbe2.chr8             59020796 1 + 153482349 T
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48100020 1 + 100215132 T
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61646275 1 + 150158102 C
i rheMac3.chr8             C 0 T 2311
s macFas5.chr8             58379964 1 + 146850525 T
i macFas5.chr8             C 0 T 62966
s chlSab2.chr8             53242956 1 + 139301422 T
i chlSab2.chr8             T 2323 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730 0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e panTro4.chr8             54979182 1138 + 143986469 T

a score=431029.000000
s hg38.chr8_KI270814v1_alt    51293 349 +    141812 GTGCTGTGGGCAGTGTTTAGTTCATGTCTGCTTTGCTGGCGGGCCGAGTAGCAACAGCTGCAGTTGGTGTGTTCTCTGAAGGCAGTATCCGAAGGCTGGAGGGGTTGCTTTTCTTCCCAGGTGTCTTTTGAAGAGGCAGTCAAGTCAGCAGCTCGCGGTGACCTTCTGGTAACATCGTATGGGCTGGGTTACAGcacatgccgactgctaagccggtcactggggaaaaccatgtgattgctgtgatgagcttagaatgatcattcctccttcgggagctggggtgggTTGAGGGAGTGATAAAGATCCCGATAACCTTGCATTTCTCCAGCGAGAAAGAAGAAAGAAA
s ponAbe2.chr8             59020797 349 + 153482349 GTGCTGTGGGCAGTGTTTAGTTCATGTCTGCTTTCCCGGCAGGCCAAGTAGCAACAGCTGCAGTCGGCGTGTTCTCTGAAGGCAGCGTGTGAAGGGTGGAGGGGTTGCTCTTCTTCCCAGGTGTCTTTTGAAGAGGCAGTCAAGTCAGCAGTTCGCAGTGAGCTTCTGGTAACATCGTATGGAATGGGTTACAGcacatgcccactgctaagccggtcactggggaagaccatgtgtttgctgtgatgagcttagaatgatcattcctccttcgggagctggggtgggTTGAGGGAATGATAAAGATCCCAATAACCTTGCATTTCTCCAGCGAGAAAGAAGAAAGAAA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48100021 349 + 100215132 GTGCTGTGGGCAGTGTTTAGTTCATGTCTGCTTTCCTGGCGGGCTGAGTAGCAACAGCTGCAGTCAGTGTGTTCTCTGAAGGCAGTATCTGAAGGGTGGAGGGGTTGCTCTTATTCCCAGGTGTCTTTTGAAGAGGCAGTCAAGTCAGCAGTTTGCAGTGACCTTCTGGTAACATCATATGGGCTGGGTTACAGCACAAGCCCACTGCTAAGCTGGTAACTGGGGAAGACCATGTGATTACTGTGATGAGCTTAGAATGATCATTCCTCCTTCAGGAGCTGGGGTGGGTTGAGGGAACGATAAAGATCCTGACAACCTTGCGTTTCTCCAGAGAGAAAGAAGAAAGAAA
i nomLeu3.chr16            C 0 T 2121
s rheMac3.chr8             61643965 346 + 150158102 GTGCTGTGGTCAGTGTTTAGTTCATATCTGCTTTCCCGGTGAGCCAAGTAGCAACAGCTATAGTTGGC-TGTAATCTGAAGGCAGTATCTGAAGGGTGAAGGGGTTGCTCTTCTTCCCAGGTATCTTTTGAAGAGGCAGTCAAGTCAGCAGCTCGCAGTGACCTTCCAGTAACATCGTATGGGCTGGGTTACAGcacatgcccactgccaagccagtcactggggaaggccatgtgattgctgtgatgagcttagaatggtcattcctccttcaggagctggggtgggTTGAGGGAACAATAAAGATCCTGATAACCCTGTGTTTCTCCAGTGAGGAAGAAGAAAGG--
i rheMac3.chr8             T 2311 C 0
s macFas5.chr8             58316999 346 + 146850525 GTGCTGTGGTCAGTGTTTAGTTCATATCTGCTTTCCCGGTGGGCCAAGTAGCAACAGCTATAGTTGGC-TGTTCTCTGAAGGCAGTATCTGAAGGGTGAAGGGGTTGCTCTTCTTCCCAGGTATCTTTTGAAGAGGCAGTCAAGTCAGCAGCTCGCAGTGACCTTCCAGTAACATCGTATGGGCTGGGTTACAGcacatgcccactgccaagccagtcactggggaaggccatgtgattgctgtgatgagcttagaatggtcattcctccttcaggagctgggatgggTTGAGGGAACAATAAAGATCCTGATAACCCTGCGTTTCTCCAGTGAGGAAGAAGAAAGG--
i macFas5.chr8             T 62966 C 0
s chlSab2.chr8             53242957 346 + 139301422 GTGCTGTGGTCAGTGTTTAGTTCATGTCTGCTTTCCCGGTGGGCCGAGTAGCAACAGCTGTAGTTGGC-TGTTCTCTGAAGGCAGTATTTGAAGGATGAAGGGGTTGCTCTTCTTCCCAGGTGTCTTTTGAAGAGGCAGTCAAGTCAGCAGCTCGCAGTGACCTTCTGGTAACATTGTATGGGCTGGGTTACAGcacatgcccactgctaagccagtcactggggaaggccatgtgattgctgtgatgagcttagaatggtcattcctccttcgggagctggggtgggTTGAGGGAACAATAAAGATCCTGATAACCCTGCGTTTCTCCAGTGAGGAAGAAGAAAGG--
i chlSab2.chr8             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730   0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e panTro4.chr8             54979182 1138 + 143986469 T

a score=220638.000000
s hg38.chr8_KI270814v1_alt    51642 264 +    141812 TTCCGTGGATAGGGAGCCAGCCAGGTTTCCTGCAGAAAATCATGGGAAGCTTTTGAGCAGGGGAGTCAGAAGATGAGCGGTGAGTATTAGGGCTTTCCGGTCACGGTGTGACAcagggattggccagctcttcctgtaaagggccaggtgggaagcactcgtaggccccgtggtctctgtcgtgtctgctgaagcctgccgtagtagcgtggaagcagtcagagatgacgtgtaagcaaatggtcccgactgacctccggtaaa
s ponAbe2.chr8             59021146 264 + 153482349 TTCCGTGGATAGGGAGCTAGCCAGGTTTCCTGCAGAGAATCACGGGAAGCTTTTGAGCAGGGGAGTCAGAAGATGAGCAGTGAGTATTAGGGCTTTCCGATCACGGCGTGACAcagggattggccagctcttcctgtaaagggccgggtgggaaacactcgtaggccccgtggtctccgtcgtgtctgctgaagcctgctgtagtagtgtggaagcagtcagagatgacgtgtaagcaaatggtcccaactggcctccggtaaa
i ponAbe2.chr8             C 0 C 0
s rheMac3.chr8             61644311 262 + 150158102 --CTGTGGATAGGGAGCCAGCCAGGTTTCCTGTGGAGATTCACAGGAAGCTTTTAAGCAGGGGAGTCAGAAGATGAGCAGTGAGTATTAGGGCATTCCAGTCACGGCGTGATGCAGGGATTGTCCTGCTCTTCCTGTAAAGGGCCAGGTGGGAAACACTCGTAGGCCCCGTGGTGGCTGTCATGTCTGCTGAGGCTTCCCGTAGTAGCGTGGAAGCTGTCAGAGATGACGCTTAAGCAAATGGTCCTGACTGGCCTCTGGTAAA
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58317345 262 + 146850525 --CTGTGGATAGGGAGCCAGCCAGGTTTCCTGTGGAGATTCACAGGAAGCTTTTAAGCAGGGGAGTCAGAAGATGAGCAGTGAGTATTAGGGCGTTCCAGTCACGGCGTGATGcagggattgtcctgctcttcctgtaaagggccaggtgggaaacactcgtaggccccgtggtggctgtcatgtctgctgaggcttcccgtagtagcgtggaagctgtcagagatgacgcttaagcaaatggtcctgactggcctctggtaaa
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53243303 262 + 139301422 --CTGTGGATAGGGAGCCAGCCAGGTTTCCTGCGGAGATTCACAGGAAGCTTTTAAGCAGGGGAGTCAGAAGATGAGCAGTGAGTATTAGGGCGTTCCAATCACGGTGTGATGcagggattgtcctgctcttcctgtaaagggccaggtgggaaacactcataggccccgtggtggctgtcatgtctgctgaagcctcccgtagtagcgtggaagcagtcagagatgacgcttaagcaaatggtcctggctggcctctggtaaa
i chlSab2.chr8             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730   0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e nomLeu3.chr16            48100370 2121 + 100215132 T
e panTro4.chr8             54979182 1138 + 143986469 T

a score=34713.000000
s hg38.chr8_KI270814v1_alt    51906 30 +    141812 gcattgattccggaagcaTTTAACAGACCT
s ponAbe2.chr8             59021410 30 + 153482349 gcGTCGATTCCGgaagcatttaacagacct
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48098249 30 + 100215132 GTGTCCATTCTggaagcatttaacagactt
i nomLeu3.chr16            T 2121 I 2450
s rheMac3.chr8             61644573 30 + 150158102 GCGTCAATTCTGGAAGGATTTAACAGACCT
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58317607 30 + 146850525 gcgtcagttctggaAGGATTTAACAGACCT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53243565 30 + 139301422 gcgtcaattctggaAGGATTTAACAGACCT
i chlSab2.chr8             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730  0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e panTro4.chr8             54979182 1138 + 143986469 T

a score=50612.000000
s hg38.chr8_KI270814v1_alt    51936 64 +    141812 AACAACCTTTCAAACCGCATGGCGTTTCTTTCCCGGATCCCGTTTCAGGAACGTTTCTGTTGGC
s ponAbe2.chr8             59021440 64 + 153482349 aacaacctttcaaaccacacagcgtttctttcccggatcccgtttcgggaatgtttctggtggc
i ponAbe2.chr8             C 0 I 1
s rheMac3.chr8             61644603 64 + 150158102 AACAACCTTTCAAGCTGCATGGCGTTTCTTTCCCATCTCCCGTTTTGGAAATGTTTCTGGCGGC
i rheMac3.chr8             C 0 I 1
s macFas5.chr8             58317637 64 + 146850525 AACAACCTTTCAAGCTGCATGGCGTTTCTTTCCCATCTCCCGTTTTGGAAATGTTTCTGGCGGC
i macFas5.chr8             C 0 I 1
s chlSab2.chr8             53243595 64 + 139301422 AACAACCTTTCAAACTGCATGGCGTTTCTTTCCCATCTCCCGTTTTGGAAATGTTTCTGGCGGC
i chlSab2.chr8             C 0 I 1
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730  0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e nomLeu3.chr16            48098279 2450 + 100215132 I
e panTro4.chr8             54979182 1138 + 143986469 T

a score=587215.000000
s hg38.chr8_KI270814v1_alt    52000 485 +    141812 TACAAGGACCGTCTCCAACATGCTTAGGCTCTGTGAACTTTCCCAGGAtcctgagtagggtatccgccattcgtccttagggctccgggatgtctcgttcttactgtgtccctgccaaccctggtcccatctcgtcatgatcacccactgcagaagagaggaggtgctagagtgaacagggtcaggg-gagccccgttcatccccagggtcccagaatgaaccagtgttaccatgtacccctgcccttgccttcctccctgctctaatggccgtgtgttagccggagatcagtttgggtctgggtgctatgggtctgttgcgcctgtggccttggtccggcctctgtccttgtctctgtgaaatgagagtgactgtgcctgagagcgttccagcaagacaatgatgatctccactgtctgattcccgcttcccaggttctcacagtagacgaggagcctgtttttcagctagctgccgcaaggggg
s ponAbe2.chr8             59021505 485 + 153482349 tacaaggactgtctccaacatgcttaggctctcttaacttTGCCAGGAtcctgaatagggcatccaccattcgtccttagggctccgggatgtcttggtcttaccgtctccctgccaaccctggtcccatctcgtcacgatcacccactggagaagagaggagatgctagagtgaacagggttgggg-gagccccgttcatccccggggtcccagaatgaaccagtgttaccatgtacccctgcccttgccttcctccctgctctattggccgtgtgttagtctgggatcagctttggtcttggtgctatcggtctgttgcgcctgtggccttgatctggcctctgtccttgtctctgtgaaatgagagtgactgtggctgagagcattccagcaagaaaatgatgatctccactgtctgattcccgcgtcccagattctcacaatagacgagcatcctgtttttcagccagctgccacgaagggg
i ponAbe2.chr8             I 1 C 0
s nomLeu3.chr16            48100729 486 + 100215132 TACAAGGACCGTGTCCAATGTGCTTGGGctctcttatctttcccaggatcctgaatagggcatcccctattcatccttagggctctgggatgtctcggtcttactgtgtccctgccaatcccggtgccgtctcgtcactatcacccactggagaagagaggaggtgctggagtgaactggttcggggaaagccccgttcatccctggggtcccggaatgaaccagtgttaccatgtgcccctgcccttgccttcctccctgctctaacggccgcgtgttagcctgggatcagccttggtctgagtgctacgggtctgttgcgcctgcggccttggtccggcctctgtccttgtctctctgacgtgagagtgactgtgggtgagagcattccagcaagacaatgatgatctctgctgtctgattcccgcttcccaggttctcacagtagacgaggagcctgtttttcagctagctgccgcaaggggg
i nomLeu3.chr16            I 2450 C 0
s rheMac3.chr8             61644668 482 + 150158102 TACAAGGACTATCTCCAACGTGCTTGGTCTCTCTTAACTTTCCCAGGAtcctgaatcgggcatccactgttcatccttactgctctgggatgtctcggtcttaccatgtccctgccaatcctggtcccatctcatcacgatcacccact---gaagagaggaggtgctggagtgaacgtggttgggg-gagccccgttcatccccagggtcccagaatgaaccagtgttactgtgtacccctgatcttgccttcctccctgctctaacagccgtgtattagcctgggatcagctttggtcccagtgctattggtctgttgcgcctgcagccttggtccagcctctgtctttgtctccgtgacgtgagagtgactgtggctgagagcattccagcaagacaatgatgatctctgctgtctgattcccacttcccaggttctcacgatagatgaggagcctgtttttcagctagctgccgcaaggggg
i rheMac3.chr8             I 1 I 238
s macFas5.chr8             58317702 482 + 146850525 TACAAGGACTATCTCCAACGTGCTTGGTCTCTCTTAACTTTCCCAGGAtcctgaatcgggcatccactgttcatccttactgctctgggatgtctcggtcttaccatgtccctgccaatcctggtcccatctcatcacgatcacccact---gaagagaggaggtgctggagtgaacgtggttgggg-gagccccgttcatccccagggtcccagaatgaaccagtgttactgtgtacccctggtcttgccttcctccctgctctaacagccgtgtattagcctgggatcagctttggtcccagtgctattggtctgttgcgcctgcagccttggtccagcctctgtctttgtctccgtgacgtgagagtgactgtggctgagagcattccagcaagacaatgatgatctctgctgtctgattcccacttcccaggttctcacgatagatgaggagcctgtttttcagctagctgccgcaaggggg
i macFas5.chr8             I 1 I 58549
s chlSab2.chr8             53243660 482 + 139301422 TACAAGGACTATCTCCAACGTGCTTGGTCTCTCTTAAGTTTCCCAGGAtcctgaatcgggcatccactgttcgtccttactgctctgggatgtctcggtcttaccatgtccctgccaaccctggtcccatctcatcacgatcacccact---gaagagaggaggtgctggagtgaacgtggttgggg-gagccccgttcatccccagggtcccagaatgaaccagtgttactgtgtacccctggtcttgccttcctccctgctctaacagccgtgtattagcctgggatcagctttggtcccagtgctattggtctgttgcacctgcagccttggtccagcttctgtctttgtctccgtgacgtgagagtgactgtggctgagagcattccagcaagacaatgatgatctctgctgtctgattcccacttcccaggttctcacaatagatgaggagcctgtttttcagccagctgccgcaaggggg
i chlSab2.chr8             I 1 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730   0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e panTro4.chr8             54979182 1138 + 143986469 T

a score=72418.000000
s hg38.chr8_KI270814v1_alt    52485 119 +    141812 ctggaaatttctcccttcagagtggacctggaaggcttggaagcatctggagaagggcatggccacgagtagagaaatccaggctacaggcagaagtgggaggaagcgagagaggaaga
s ponAbe2.chr8             59021990 119 + 153482349 ctggacatttctcccttcagacaggaccaggaaggcccggaagcatctgaggaagggcatggccatgagtagagaaatcgaggctatgggcggaagtgggaagaagcaagagaggaaga
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48101215 119 + 100215132 ctggacatttctcccttcaaataggaccgggaaggcctggaagcatctggagaagggcgtggctgtcagtagagaaacagaggCTACAGGCTGAGGCAGGAGGAAGCGAGAGAGGAAGA
i nomLeu3.chr16            C 0 C 0
s macFas5.chr8             58376733 119 + 146850525 tttgactttactccatttgaatttgaccttgaagaccttgatgcatattgagaagggcatagaagtgattagagaaatagaagctacaggaggaagtgggaggaagcgagtgaggaata
i macFas5.chr8             I 58549 C 0
s chlSab2.chr8             53244142 119 + 139301422 ctggacatttcacccttcagataggacctggaaggcctggaaacatctggagaagggcgtgactgtgagtagagaaaaggaCACTATTGGCGGAAGCGGGCGGAAGCAAGAGAGGAAGA
i chlSab2.chr8             C 0 T 1950
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730   0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e rheMac3.chr8             61645150 238 + 150158102 I
e panTro4.chr8             54979182 1138 + 143986469 T

a score=14938.000000
s hg38.chr8_KI270814v1_alt    52604 38 +    141812 ctcatggaaagccttgctgcactcgccaaaagagctgc
s ponAbe2.chr8             59022109 38 + 153482349 ctcatggaaagccttgctgtgctcgccaaaagagctgc
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48101334 38 + 100215132 CTCACGGAAGACCTTGCTGCGCTGTGCAAAAGAGCCGC
i nomLeu3.chr16            C 0 I 1783
s macFas5.chr8             58376852 38 + 146850525 ctcatggaaagcctccctgtgctccccaaaacagccac
i macFas5.chr8             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730  0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e rheMac3.chr8             61645150 238 + 150158102 I
e chlSab2.chr8             53244261 1950 + 139301422 T
e panTro4.chr8             54979182 1138 + 143986469 T

a score=37231.000000
s hg38.chr8_KI270814v1_alt    52642 237 +    141812 cctcggactcaagagggccacgttca-atgccaacctgacataaggtagtcacctctggagcacttgtggcctggggcaaaaacacagctggattgaaggaagagtcttccctgttcccagaggggcactg--actggaaatgagcatgaaggtggggtccctaaagggccacagaacgaggccctatgcaggtgtcggtacagactgccccaaaagccccctgagcagttggccctagg
s ponAbe2.chr8             59022147 237 + 153482349 cctgggacttgagagggccacgttca-atgcctaactgacataaggtagtcacctttggagcacttgtggcctgaggcgaaaacgcagctggggtgaaggaataatcttccctgttcccagaggggcgctg--actggaaatgaccatgaaggtggagtccctaaagggccagagaacgaggccctatgcaggcgtcagtacagactgtcccaaaagccccctgagaagttggccctggg
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8             58376890 235 + 146850525 ccttgaatttgagagggccatatttatttgccctcttgacataaggtagtaacctccagaggatttgggccttagggtaaaaactcccaaaggttagaggaagaat-ttcccccctcccataggggtactatttccaaaaaaaagcaagtaggtagggttcttaaaaggccacagaatgaagctctatgcaggt----gaacaaatggcttcaaaagccactgaagaactgggccctgag
i macFas5.chr8             C 0 I 862
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730   0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e nomLeu3.chr16            48101372 1783 + 100215132 I
e rheMac3.chr8             61645150 238 + 150158102 I
e chlSab2.chr8             53244261 1950 + 139301422 T
e panTro4.chr8             54979182 1138 + 143986469 T

a score=1055.000000
s hg38.chr8_KI270814v1_alt    52879 11 +    141812 gcTTCAGAGGT
s ponAbe2.chr8             59022384 11 + 153482349 gcTTCAGAGGT
i ponAbe2.chr8             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730  0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e nomLeu3.chr16            48101372 1783 + 100215132 I
e rheMac3.chr8             61645150 238 + 150158102 I
e macFas5.chr8             58377125 862 + 146850525 I
e chlSab2.chr8             53244261 1950 + 139301422 T
e panTro4.chr8             54979182 1138 + 143986469 T

a score=2074.000000
s hg38.chr8_KI270814v1_alt    52890 11 +    141812 aggcacggtga
s ponAbe2.chr8             59022395 11 + 153482349 aggcacggtga
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8             58377987 11 + 146850525 aggcaaagtta
i macFas5.chr8             I 862 I 5477
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730  0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e nomLeu3.chr16            48101372 1783 + 100215132 I
e rheMac3.chr8             61645150 238 + 150158102 I
e chlSab2.chr8             53244261 1950 + 139301422 T
e panTro4.chr8             54979182 1138 + 143986469 T

a score=66224.000000
s hg38.chr8_KI270814v1_alt    52901 472 +    141812 agagccggagtgaaagctgcttcagcact-ttggagcaggaaggaaagaaagcgagatacagttggaagatagtgaagtggacaacctgagggat-ggagtgcagggtttgaccttcaacttggggtctcctccttgggcagccttctggggtggcgtcattgcctctccactgatccttcccttgggcggtgctgtcaaccggtgccgctgcctgtcagcccatgggcgaggtgagtcacaggcactgtggggttcttggagtcttaggcctgctcacttgaggcattcttcccctattcgttgagtgttctcagagggaggggacggagctgctcaaccctgctcttgtggctgtcaaggtgtcctgcattatcccacacgcccaactcctgggatcttacagggaggctgctgatgtccaccttcctgcgcttccatccatcaggtgcctgcccttccttggctgcagccg
s ponAbe2.chr8             59022406 472 + 153482349 agagcaggagtgaaagctgcttcagcact-ttggagcaggaagaaaagcaagcgagatacagttggaagagggcaaagtggacaacctgagggat-ggagtgcagggtttgaccctcaacttggggtctcctccgtgggcaggcttctggggtggcataattgcctctccactgatccttcccttgggcggtgctgtcaactggtgccgctctctgtcagcccatgggcggggggtgtcgcaggcacagtggtgttcttggagtcttaggcctgctcacttgaggcattcttcccctacccgttgagtgttctcagaggaaggggatggagctgctcaaccctgctggtgtggctgtcagggtgtcctgcgttatcccacatgcccaactcctgggatcttacagggaggctgctgatgtccaccttcctgcacttccatccgtcgggagcctgcccttccttggcttcggccg
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8             58383475 462 + 146850525 agagcaggagtgaaagtttattaaaaagtattaaagagggaatgaaaggaagcaaagtacacttggaagaggcccaagcatgcaacctgagagatccaagtgcacagtttgacccttgacatgggtttttataggttggtagactttgggggatgcatta------cttctctgattcttcccttagaggaggctctc-acatgtgcagtggcctgtcagctcttggaag----gagccacgtgtgcagagtctttattagagatatacgcacgctaacttgaggcattccacttttacctggtggattttttctgagaatggtcatataccagttaaactctgccattttgcctcttactgtg-catgcatgagcccattagcccagctcttgaaatcttatcaggaagtcactgatcactagcttcagatgtttccctttactgggagtctgccttttactggtggtgacca
i macFas5.chr8             I 5477 I 18
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730   0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e nomLeu3.chr16            48101372 1783 + 100215132 I
e rheMac3.chr8             61645150 238 + 150158102 I
e chlSab2.chr8             53244261 1950 + 139301422 T
e panTro4.chr8             54979182 1138 + 143986469 T

a score=3564.000000
s hg38.chr8_KI270814v1_alt    53373 41 +    141812 gccgtgaggagttttcctccatagatagggttcaagtaccg
s ponAbe2.chr8             59022878 41 + 153482349 gctgtgagcagttttcctccatagatagggttcaagtaccg
i ponAbe2.chr8             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730  0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e nomLeu3.chr16            48101372 1783 + 100215132 I
e rheMac3.chr8             61645150 238 + 150158102 I
e macFas5.chr8             58383937 18 + 146850525 I
e chlSab2.chr8             53244261 1950 + 139301422 T
e panTro4.chr8             54979182 1138 + 143986469 T

a score=6025.000000
s hg38.chr8_KI270814v1_alt    53414 28 +    141812 cccaactgtcacctcatggtcatctgac
s ponAbe2.chr8             59022919 28 + 153482349 cccaactgtcacctcatggtcatctgac
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8             58383955 28 + 146850525 cctgaccatcacttcatggttgcctgac
i macFas5.chr8             I 18 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730  0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e nomLeu3.chr16            48101372 1783 + 100215132 I
e rheMac3.chr8             61645150 238 + 150158102 I
e chlSab2.chr8             53244261 1950 + 139301422 T
e panTro4.chr8             54979182 1138 + 143986469 T

a score=25304.000000
s hg38.chr8_KI270814v1_alt    53442 87 +    141812 attcctggtggtggt--ggggggaccccc-ggtactatgctcacgtcagaccaagtacctCAAGTGATAGGAACGTCTGACAGGATTGCA
s panTro4.chr8             54978044 88 + 143986469 attcctggtggtggt--agggggaccccctggctccatgctcacatcagaccagctacctCGAGTGGCAGGAACGTCTGACAGGATTGCA
i panTro4.chr8             T 1138 C 0
s ponAbe2.chr8             59022947 89 + 153482349 attcctggtggtggtggggggggacccac-agtactatgctcacgtgagaccaggtacctCAAGTAACAGGAACCTCTGACAGGGTTGCA
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8             58383983 83 + 146850525 attcctagtga------gaagaggccctc-tctgccctgctaatgtctgactagctacctactgtaataGAAACATTGGCCAAGATTGAA
i macFas5.chr8             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730  0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e nomLeu3.chr16            48101372 1783 + 100215132 I
e rheMac3.chr8             61645150 238 + 150158102 I
e chlSab2.chr8             53244261 1950 + 139301422 T

a score=11697.000000
s hg38.chr8_KI270814v1_alt    53529 34 +    141812 CATGTGGCAGAAG-AGCATCCGAGAAGATTGAAGC--
s panTro4.chr8             54978132 34 + 143986469 AATGTGGCAGAAG-AGCATCCGAGAAGGATGAAGG--
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59023036 34 + 153482349 CATGTGGCAGAAG-AGCATCTGAGAAGATTGAAGG--
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8             58384066 35 + 146850525 TGTTTGGTAGAAGAAACATCTGACAAGATTAAATA--
i macFas5.chr8             C 0 C 0
s xenTro7.KB022022            52993 36 -     65699 CATGGGGTATGAC-AGTACCCCATGTGGTCGAAGGCC
i xenTro7.KB022022         N 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730  0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e nomLeu3.chr16            48101372 1783 + 100215132 I
e rheMac3.chr8             61645150 238 + 150158102 I
e chlSab2.chr8             53244261 1950 + 139301422 T

a score=11979.000000
s hg38.chr8_KI270814v1_alt    53563 33 +    141812 TTTGGCAGAAGAAACACCTGCCAGATCAGATGT
s panTro4.chr8             54978166 33 + 143986469 TTTGGCAGGAGAAACACCTACCAGATCAGATGT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59023070 33 + 153482349 TTTGGCAGAAGAAACACCTGCCAGATTAGACGT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48103155 28 + 100215132 TTTGGCAGAAGAAACCTCTG-----TCAGATGT
i nomLeu3.chr16            I 1783 C 0
s macFas5.chr8             58384101 22 + 146850525 TTTGACCAAAGAAACACTGGAC-----------
i macFas5.chr8             C 0 C 0
s xenTro7.KB022022            53029 33 -     65699 TTGGGTGGCCGAAAGGTGTGGGAGGGCTTGAGT
i xenTro7.KB022022         C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221193          9789397 565 +  32995986 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730  0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e rheMac3.chr8             61645150 238 + 150158102 I
e chlSab2.chr8             53244261 1950 + 139301422 T

a score=40996.000000
s hg38.chr8_KI270814v1_alt    53596 128 +    141812 GAATGTGT----GGCAGAAGGCCCATCTGGGAAGATTGCACATTGGGTAGTAGGAAGACCTAAGAGCA-CTG----GACAGCA-GAAGGAGTGCCTCTGGAGATTGCCCGGTGGGCGGCG------------GTAGCATCTGGGAGGATT
s panTro4.chr8             54978199 132 + 143986469 GAATGTGT----GGCAGAAGGCCCATCTGGGAAGTTTGCACACTGGGCAGAAGGAAGAGCTAAGAACG-TTGTACAGACAGCA-GAAGGAGTGCCTCTGGAGATTGCCCGGTGGGCGGTG------------GTAGCATCTGAGAGGATT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59023103 128 + 153482349 GAATGTGT----GGTAGAAGGCCCATCTGGGAAGATTGCACACTGGGCAGTAGGAAGACCTAAGAACA-TTG----GACAGCA-GAAGGAGTGCCTCATGAGATTGCCTGGTGGGTGGCG------------GAAGCATCTGAGAGGATT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48103183 132 + 100215132 GAACGTGT----GACAGAAGGACCATCCGGGAAGATTGCACACTGGGCAGAAAGAAGACTTAAGAACA-TTGCATGGACAGCA-GAAGGAGTGCTTCGGGAGATTGCCTGGTGGGCAGCG------------GGAACACCTGAGATGACT
i nomLeu3.chr16            C 0 T 1943
s macFas5.chr8             58384123  72 + 146850525 -------------------------------AAGATTCAATATTGGTTAGAAGAAA----------CA-TTG----GACA--------------------AGATTGAATGTTTGGCAAGA------------AAAACAGCTGACAAGATT
i macFas5.chr8             C 0 C 0
s pseHum1.KB221293          1179250 129 -   1495300 GAATGGGT----TCCCAAAGGACCATGAAGGAAGGTGGGA---TGGGTTCCCGAAGGACCATGAAG----------GACAGTG-GGATGGGTTCCC---GAAGGACCATGATGGGCAGTGGAATGGGTTCCCGAAGGACCATGAAGGACG
i pseHum1.KB221293         n 565 C 0
s xenTro7.KB022022            53062 109 -     65699 --ATATGTAAGGGGTAGGAGGGCT-------------------TGGGTGGAAGAAAGGGGTGGGAGCGCTTG----GATTGAATTTAGGGGTG----GGGGGGTGGGGGCTTGGGTGGAA------------GGAAGGGGTGGGAGGTTG
i xenTro7.KB022022         C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730   0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e rheMac3.chr8             61645150 238 + 150158102 I
e chlSab2.chr8             53244261 1950 + 139301422 T

a score=1500.000000
s hg38.chr8_KI270814v1_alt    53724 1 +    141812 G
s panTro4.chr8             54978331 1 + 143986469 G
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59023231 1 + 153482349 G
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8             58384195 1 + 146850525 G
i macFas5.chr8             C 0 I 16
s pseHum1.KB221293          1179379 1 -   1495300 G
i pseHum1.KB221293         C 0 C 0
s xenTro7.KB022022            53171 1 -     65699 G
i xenTro7.KB022022         C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730 0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e nomLeu3.chr16            48103315 1943 + 100215132 T
e rheMac3.chr8             61645150 238 + 150158102 I
e chlSab2.chr8             53244261 1950 + 139301422 T

a score=9022.000000
s hg38.chr8_KI270814v1_alt    53725 49 +    141812 CGGGGTGTG-------------CGGGAGGATGAGCTGGGAA-----------GGATTCAAGGC----CTTGGGAGGC
s panTro4.chr8             54978332 49 + 143986469 TGGGGTGGG-------------AGGGAGGATGAGCTGGGAA-----------GGATGCAAAGC----CTGGGGAGGC
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59023232 49 + 153482349 CGGGGTGGG-------------CGGGAGGATGAGCTGGGAA-----------GGATTCAAAGC----CTCAGGAGGC
i ponAbe2.chr8             C 0 C 0
s pseHum1.KB221293          1179380 52 -   1495300 TGGGATGGGTTCCTGAAGTGCCAGGAAGGA--AGGTGGAAT-----------GGGTTC-----------CTGAAGG-
i pseHum1.KB221293         C 0 C 0
s xenTro7.KB022022            53172 64 -     65699 GGGCTTGGG-------------TGGAAGGAAGGGGTGGGAGGGTGGGAGCTTGGGTTGAAAGAAGGGATGGGAGAGC
i xenTro7.KB022022         C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730  0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e nomLeu3.chr16            48103315 1943 + 100215132 T
e rheMac3.chr8             61645150 238 + 150158102 I
e macFas5.chr8             58384196 16 + 146850525 I
e chlSab2.chr8             53244261 1950 + 139301422 T

a score=110155.000000
s hg38.chr8_KI270814v1_alt    53774 430 +    141812 --------------------AACATGTGAAGATGATTAAATATGTGGCAGAAGAAACACCTGAGAAGATGGGATGCTTGCCAGGGGGAACAAGGGACAGAGTGGAGCGTTTGGGAGAAGGGATGCTTAGGGAGATTGCACGTGTGGTGGAAGGAACATGTGAGAAGGTTG-CATGGTGGACAGCAGAAACCTTGCAGCTGATGGCACAGCAGCAGGGAGGAAAACGTAGGAAGCATGC--------------------------AAGTGCGTGGCCTGCGAAAG----------------------------------AAGCATCTGAAGGGATGGCATGTCTGGCTGAGGACAGGCACATTGGGCAAGATTCCACGTTTGGCAGTGGGGCCCGTGAGTGgcgg---c-agatgcgt-----gcaggcctg------cggcaacctcgg-ttcctgcctcctgagcagaaggacatcgaccgaggggcacaaggcagagggagagactgaggaacacgttggagcag
s panTro4.chr8             54978381 422 + 143986469 --------------------AACATGTGAAGACGATTAAATATGTGGCAGGAGAAACACCTGAGAAGATGGGATGCTTGGCAAGGGGAACAAGGCACAGAGCGGAGTGTTGGGGAGAAGAGACACTTAGGGAGATTGCATGTGTGGCAGAAGGAACACGTGAGAAGGTTGCCATGGTGGACAGCAGAAAAATTGCAGCCAATGGCACAGCGGTGGGAAGGAAATCATAGGAAGCTTGC--------------------------AAGTGCGTGGCCTGCAAAAG----------------------------------AAGCATCTGAAGGGATGGCATGTCTGGCAGAGGA----CACGTTGGGCAAGATTCCACGTTTGGCAGC-AGACCCGTGAGcggcgg---c-agacgcgt-----atgggcctg------tggcaacctcag-ttcctgcctcctgagaagaaagacat----cgagtggcacacggtagagtgagagaccaagacacgcattagagcag
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59023281 426 + 153482349 --------------------AACATGTGAAGACGATTAAATATGTGGCAGAAGAAACACCTGAGAAGATGGGATACTTGCCAGAGGGAACAAGGGACAGAGTGGAGTGTTTGGGAGAAGGGACGCTTAGGGAGATTGCACGTGTGGCGGAAGGAACATGTGAGAAGGTTG-CATGGTGGACGGCAGAAACCTTGCAGCTGATGGCACAGCAGCAGGGAGGAAAACGTAGGAAGCATGC--------------------------AAGTGTGTGGCCTGCGAAAG----------------------------------AACCATCTGAAGAGATGGCATGTCTGGCAGAGGA----CACATTGGGCAAGATTCCACGTTTGGCAGTGGGGCCCGTGAGcggcgg---c-agatgcgt-----acaggcctg------cggcaacctcgg-ttcctgcctcctgagaagaaagacatcgaccgaggggcacaaggcagagggagagactgaggcacacgttggagcag
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8             58384212 483 + 146850525 --------------------GACATCTGACAA-GATTGAATGCTGGGGCAAAGAAACATCTGATAAAATTTAACATGTGGCAGGAGAAACAACTGAC--AATTGAATGGTTGGCAGAGGGAACATTTAAGAAGACTGCACATTTGGCAGAAGAAACATCTGAGAAGATTG-CATGGTCGACAACAGAAACATTTAAACAGATTTCATAGTGGGCAGAAAGAGTATCCAAGAAGACTGCATGGTTGGCAGAGAGAAAACCTGAAAATGTGCAGGGCCTGCAAAAGAAACATGTAAAATAATTCAATATTTGGCAGAAGAAAACATCTGACAAGATCGAATATTTGGCCGAGAA----AAAGGCTGACAAGATCTAATGTTTGGCAAT-AGGAATTttagcagctg---t-ggatcagt-----agaagcctg------cagaagcctcaatttcttgcccctttagaagaaataattcaactgaggagcattaggcagagtgagagacccaggcaagttttagagcag
i macFas5.chr8             I 16 C 0
s pseHum1.KB221293          1179432 412 -   1495300 --------------------ACCATG-ATGGGCAGTGGAATGGGTTCCCAAAGGACCATGAAGGAAGGTGGGATGGGTTCCCAAGGGACCATGAAGGACAGTGGGATGGGTTCCCAAAGGACCATGAAGGAAGGTGGGATGGGTTCCCGAAGGACCATGAAGGAAGGTGG-GATGGGTTCCCAAAGGACCATGAAGGAAGGTGGGATGGGTTCCTGAAGGACCATGAAGGAAGGTGGG--------------------------------ATGGGTTCCTGAAG----------------------------------GACCATGATGGGCAGTGGAATGGGTTCCCGAAGG----ACCATGAAGGAAGGTGGGATGGGTTCCCAA-GGGACCATGAAGGAAGG---TGGGATGGGTTCCTGAAGTGCCAGGAAGGATGGTGGGATGag-ctcc--cctccccaggcctgctgccagggcagaggggcagagggcaggg----------------acactGCAGTGA
i pseHum1.KB221293         C 0 C 0
s xenTro7.KB022022            53236 357 -     65699 AGGGAGTTGGGTTGAAGGAAGGGATGGGAGAGCAGGGGCATGGGTGG---AAGGAAGGTGTGGGAGGGTGGTGGGTTGGGTGGAAGGAAGGGGTGGGAGGGTGGTGGGTTGGGTGGAAGGAAGGGGTGGGAGGGTGGTGGGTTGGGTGGAAGAAAGGGGTGGTAGGGTGG-TGGGTTGGGTGGAAGGAAGGGATGGGATTGTAGGGGCATGGGTGGAAGGAAGATATGGGAG---TGC--------------------------AGGGGCATGG---GTGGAAG----------------------------------GGCGAAGTTGAAGGAAGGGGTGG------GAGGG----C------------------------------AGGGGCTTGGGTGGAAGGAAT-AGGAGGGC-----AAGGGCTTG------------------------------------------------------GGTAAAAGGAAGGGGTGAGAAGCAGGATAAGCGCTGAAGCAG
i xenTro7.KB022022         C 0 N 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730   0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e nomLeu3.chr16            48103315 1943 + 100215132 T
e rheMac3.chr8             61645150 238 + 150158102 I
e chlSab2.chr8             53244261 1950 + 139301422 T

a score=21561.000000
s hg38.chr8_KI270814v1_alt    54204 84 +    141812 gggcgaaagttcctgaaa-----cggtattgtggcaggagccaaaggaagtcaaggaggcttggaagaggcccaggcaggcagcagcct
s panTro4.chr8             54978803 84 + 143986469 gggtgaaagttcctgaaa-----tggtattgtggcaggagccaaagaaagtcaaggaggcttggaagaggcccaggtgggcggtgacct
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59023707 84 + 153482349 gggcgaaagttcctgaaa-----aggtgtcgtggtaggagccaaaggaagtcaaggaggcttggaagaggcccaggcaggcagcaacct
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8             58384695 79 + 146850525 gagtaaaatttattaaaa------agtaatagagcaagaaagaaaggaagtaaagtacactt-aaagagggccaaacat---gtgactt
i macFas5.chr8             C 0 C 0
s pseHum1.KB221293          1179844 87 -   1495300 CACCAGAGAGTCCTCACAGCTGTCGGTGTCGTTGGCCACGGCGATGATGCCCATGGGCTGCTGGGGGATGTCCA--CACGCAGCAGTTT
i pseHum1.KB221293         C 0 n 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730  0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e nomLeu3.chr16            48103315 1943 + 100215132 T
e rheMac3.chr8             61645150 238 + 150158102 I
e chlSab2.chr8             53244261 1950 + 139301422 T

a score=30144.000000
s hg38.chr8_KI270814v1_alt    54288 123 +    141812 gagaggtgcagtgcagggctggaccttcgactcggggtctcccccattggca-------------gcattgctgccggtcccctgatgcttctcttgtcggggaagagggggcagtccactggcgcagtggcctgt
s panTro4.chr8             54978887 123 + 143986469 gagaggtggagtacaggacaggaccttggactcagggtctccagcgtcggca-------------gcatcgctgcgtgtcctctgatgcatcccttggcggggaagaaggggctgttcactagcacagtggcctgt
i panTro4.chr8             C 0 T 5364
s ponAbe2.chr8             59023791 123 + 153482349 gagaggtggagtgcggggctggaccttcgactcgggttctcccccactggca-------------gcattgctgccggtcccctgatgcttctcttgttggggaagagggggcagtccactggtgcagtggcctgt
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8             58384774 122 + 146850525 tagatatcaggttcatgatttgaccttttacttggggccgtataggttggcaggcttctgaaattgcattac------atttctgattcttttcttg--------gaccagtctgtctgcatgcatagtagcctat
i macFas5.chr8             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221293          1179931   0 -   1495300 I
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730   0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e nomLeu3.chr16            48103315 1943 + 100215132 T
e rheMac3.chr8             61645150 238 + 150158102 I
e chlSab2.chr8             53244261 1950 + 139301422 T

a score=126609.000000
s hg38.chr8_KI270814v1_alt    54411 500 +    141812 tagcatcttcttgtggggtggaggggcgggggc-cgcaggtgctgtgtgcttactggagttgttagcgtgcttgcttgag-----------------------------------------gcatttctccagcaagcagacgaatgtgtccaggggtaaaggtcctacagcagtgaacctcccaccagtttgcctctcagggcacgtgcgtgagcccacttgcccaactcacaaggtctgccagggatgcttccgatgttcctgactgctgtggggg-----------agggggactgcctttccctggcactgcctgcg-ccagtgatttctctagagagtctgctttgagaccacacgaccatcacctcgcggctgcctaacatttac--tggtggtggggaaccctctcgggccccgctcTGCACGTGTGAC-------------GGAGAGGGACACCTGACAGGATTGAACGTGTGCCAGAAG-ATCATCTGACGAGATGGAGTGTCTGGCGGAAGGAACATCTGACAGCC----GAGTGTGACAGAGGTAACATCTAAGCAGACTGCA
s panTro4.chr8             54973646 487 + 143986469 caccacctcct----------------gggggcacggaggcgccgtgtgcttactggagttgttctcgtgctctcttgag-----------------------------------------gctttcctcccccaagcagacgaatgtgcccaggggaaaacatcctagatgagtgaaccttccgccagtttgcgtctcagggcgcatgtgtgagcccattcacccaactcccgaggtgtgctggggaggcttctgaggttcgtgactgctgtggggg-----------agggggactgcctttccctggcgctgcctgtgatcagtgatttctctagagagtctgcttcgtgaccaccgggccgtcaccttgcggctgcctgatgtttac--tggtggtggggaaccctctcgggccccgctcCACACATGTGAC-------------TGAGAGGGACACCTGACAGGATTGAACGCGTGGCAGA----TCATCCGACGAGATGGAGTGTCTGGTGGAAGGAACATCTGACAGCCCTGAGCGTGTGGCAGAGGGAACATCTAAGCAGACTGCA
i panTro4.chr8             T 5364 C 0
s ponAbe2.chr8             59023914 498 + 153482349 cagcatcttgttgtggggtggagggacgggggc-cacaggtgctgtgggcttactggagttgttagcatgcttgcttgag-----------------------------------------gcgttcctccagcaagcagacgaatgtgcccaggggtaaaggtcctagagcagtgaacctcccaccagtttgcctctcagggcacgtgcgtgagcccacttgcccaactccagaggtctgccagggaggcgtccgatgttcctgactgctgtggggg-----------acggggactgcctttccctggcactacctgcagccagtgatttctctcgagagtctgctttgcgaccacgtgaccatcacctcgcggctgccggacatttac--tggtggtggggaaccctctcgggccccgctcTGCACCTGTGAC-------------TGAGAGGGACACCTGACAGGATTGAACGCGTGCCAGA----TCATCCGACGAGATGGAGTGTCTGGCGGAAGGAACATCTGACAGGC----GAGTGTGACAGAGGTAACATCTAAGCAGACTGCA
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8             58384896 519 + 146850525 --------------------------cag-----cacatgtacagtgtgtttactggagttgtatgcacattcagttaagCTTTCTTTATTCTGTTTTTTCATTTTTTATTGACTTTTTTTTTTTttttttttttaccagttgaatattcccagag--aaaggtcataaatgttttaaact-ccaccattttgccccttag----cgtacattagcctattcactcaactcttgagatcttattgggaaactgctgat-----caacaactgtaggtgtttctatctattgaaagactgcttttcctggg-------tgtgaccaattattatctcatacaggcagtttaacaaccacctgaccatcaactcatggacaactggcatttttggtggggatgaaaaagattttctgtcctgat----cacatctgactagctaactactataacaGAAATAGCAAACAAGATTGAATGTCTGACAGAAGAAACATCTGTAACGGTTGAATGTTTGG-AGAAGAAACATCTGACAACCTCGCATGTTTGGAAGTAGAAACAACTGATTAGACTGCA
i macFas5.chr8             C 0 T 6717
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221293          1179931   0 -   1495300 I
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730   0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e nomLeu3.chr16            48103315 1943 + 100215132 T
e rheMac3.chr8             61645150 238 + 150158102 I
e chlSab2.chr8             53244261 1950 + 139301422 T

a score=74609.000000
s hg38.chr8_KI270814v1_alt    54911 307 +    141812 GCGATTTCGGAAGGAACTGCTAAGAACATCTGGTGATCAGCATGAGGAAACCTTAGGGTAGGGAGATTGCAGGGGGGGCTGGCAGGGTGAGGGAACCCGTGAGAAGACTGCAGGATGGGCAGTTGGACGCCCTAGGCAGATTGCAAGGCCTGCCCAAGAAACATCTGGGTGGAGGAAGTATTGGGCCCATGGTGCGCCGGACAAGACTGAGCGCTTGTCAGGGGAGGGAGCGGACACAACTAGCTGTTTGGCAGAAGGAACACTCAGGTAGACTGCACGTTTAGCAGAAGGCCTAAGTGCGAAGATG
s panTro4.chr8             54974133 305 + 143986469 GCGATTTCAGAAGGAACGGCTAAGAATGTCGCATGGTCAGCAGGAGGAAACCGTAGGGTAGGGTGATTGCAGGGGGG-CTGG-GGGGCAAGGGAACCCGTGAGAAGACTGCAGGATCAGCAGTTGGATGCCCTAGGGAGATTGCAAGGCCTGCCCAAGAGACATCTGGGTAGAGGAAGTACTGGGCCCATGGTGCGCCAGACAAAACTGAGTGCTTGTCAGGGGAAGAAGTGGACGCAACTGGCTGTTTGGCAGAAGGAACCCTCAGGTAGATTGCACGTTTGGCAGAAGGCCCAAGTGCGAAGATG
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59024412 306 + 153482349 GCGATTTCGGAAGGAACTGCTAAGAACATCTCGTGGTCAGCATGAGGAAACCTTAGGGTAGGGAGATTGCAGGGGGG-CTGGCAGGGTGAGGGAACCCGTGAGAAGACTGCGGGATTGGCAGTTGGACGCCCTAGGCAGATTGCAAGGCCTGCCCAAGAAACATCAGGGTAGAGGAAGTATTGGGCCCATGGTGCGTAGGACAAGACTGAGCACTTGTCAGGGGAGGGAGCGGACGCAACTGGCTGTTTGGCAGAAGGAACACTCAGGTAGACTGCACGTTTGGCAGAAGGCCTAAGTGCGAAGATG
i ponAbe2.chr8             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221293          1179931   0 -   1495300 I
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730   0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e nomLeu3.chr16            48103315 1943 + 100215132 T
e rheMac3.chr8             61645150 238 + 150158102 I
e macFas5.chr8             58385415 6717 + 146850525 T
e chlSab2.chr8             53244261 1950 + 139301422 T

a score=144680.000000
s hg38.chr8_KI270814v1_alt    55218 477 +    141812 GCGTGGTCAACAGCAGAAAACCCTTAAGCAGGTCTCATGGTGGGCAGAAGGAACCTCTGAGCAGATTCCACGGTGGGTAGACGGAACACCTAGGAAGATTGCATGCCGTGCAAAGGAAA-------CAGCTGGAAAGAGGGAACATTTGGGAGAGAAAACATCCGCTAAGATGGGGTGTTTGGCGGTAGGGACGTCCGcggcggtggatccatagaggcctgcacgcagcaacctgagctcttgcctcgtcagagggagtttgactgaggggcatgaggcggagggagagaaaccgaggccactttaagcgcggg--------tctcccagatggtaccggagcagggaggcgaggcaataaggtacacttagaagaatgccatgtgtgcaactggagaggtcaggggcatgcattgttcgacctttgaggagaggtctcacacattggcaggcttccaggagccaggggttgcgtcgcttcctcccctgag
s panTro4.chr8             54974438 484 + 143986469 ACATGGTAGACAGCAGAAA-CCCTTCAGCAGGTCGCACGGTGGGCGGAAGGGACCTCTGAGCAGATTCCATGGTGGGCAGATGGAATGCGTAGGAAGAGTGCGTGGCTTGCAAAGGAAG-------CATCTGGAAAGAGGGAACATCTGGGAGAGAAAACATCCACCAAGGTGGAGCGTTTggcggtagggatgtcagcggtggcagatccataggggcctgcacgcagcaacccgagctctcgcctcatcagagggagtttaactgaggggcgtgaggcggggtgaaagagaccgaggccactttgagcgcaggagtgcaggtctcccagatagtaccagagcagaaagatgaggcagtaaggtatacttggaagagggccatgtgggcaactggagaggtcaggggcacactttgttcgacctttgaggtgaggtctcacagattggcaggcttccaagagccaggggttgcattgcttcctcccctgag
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59024718 467 + 153482349 GCGTGGTCGACAGCAGAAAACCCTTAAGCAGGTCGCACGGTGGGCAGAAGGAACCTCTGAGCAAATTCCACGGTGGGTAGACGGAACACCTAGGAAGAGTG-------------------------CAGCTGGAAAGAGGGAACATTTGGGAGAGAAAACATCCGCCAAGATGGGGTGTTTGGCAGTAGGGACGTCCGcggcggcggatccatagaggcctgcacgcagcaacctgagctctcccctcctcagagagagtttgactgaggggagtgaggcggagggagagagaccgaggccacttagagcgcgggagcgccggtctcccagatggtaccggagcaggaaggtgaggcagtaaggtacacttagaagagggccacgtgggcaactggagaggtcaggggcacgctttgttcaacctttgaggcgaggtctcacacattggcaggctttcaggagccaggggttgcgtggcttcctcccctgag
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8             58378698 446 + 146850525 GCGTGGT---CAGCAGGAA-CCCTGAGGGAGATGGCATGGTAGGCAGAGGAAGTATCTAAAAAGATTGCACAGTCTGCATAAGGATGACCTAGGAAGAGTGCATGGCCTGCAAAAGAAAAGATTCTAATCTGAAAAGATTAAATATTTGGCACGGGAAACATCTGATAAGGTTCAATGTTTGTTAGTAAAAATgttagtggtggcagatttgcatgtgtcg----gcagcaacctgaattgcctccccagaagaaagaattcaacggagggatataaggcagagtg--agaggcaaaggcaagttttagagcaggagtgaaagtttcttaaaaagcattagagcagaaacaaaagaaaataaagtacatgtggaagaaagcaaagtgggtggcttgagagatccatgg-------------acct-----gagaagatccaagccttctca-----------------ggttgtgtta-tttttcccctgat
i macFas5.chr8             T 6717 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221293          1179931   0 -   1495300 I
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730   0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e nomLeu3.chr16            48103315 1943 + 100215132 T
e rheMac3.chr8             61645150 238 + 150158102 I
e chlSab2.chr8             53244261 1950 + 139301422 T

a score=52587.000000
s hg38.chr8_KI270814v1_alt    55695 94 +    141812 ccttttcacagggcgggccatccacatgggcagtggcctgtcggcacttgggagggaccgcaggcgcagcgtgtttcctggagtcgtaggggtg
s panTro4.chr8             54974922 94 + 143986469 ccttttcgcagggtgggccatccacatgggcagtggcctgtcgtcacctgggagggaccgcaggcgtggcgtgtttcctggagtcataggggcg
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59025185 94 + 153482349 ccttttcgaagggcgggccatccacatgggcggtggcctgtcggcacttgggagggaccgcaggcgcggcgtgtttcctggagtcttaggggtg
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48101372 94 + 100215132 CCttttcacgtggtgtgctgtccacattggctgtgtcctgttgacagctgggaggggccataggcatggcgtttttcctgcagttgcaggcact
i nomLeu3.chr16            T 1943 C 0
s macFas5.chr8             58379144 92 + 146850525 tcttcccttagggtgtgctgtccatacatgcagtggcctgccagcacctggga--gactgcatttgcagtgtgttttttggagttgtatgcctg
i macFas5.chr8             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221293          1179931  0 -   1495300 I
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730  0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e rheMac3.chr8             61645150 238 + 150158102 I
e chlSab2.chr8             53244261 1950 + 139301422 T

a score=119013.000000
s hg38.chr8_KI270814v1_alt    55789 151 +    141812 ctcacttgaggcgtgcctccctcggca-gttggatgttgcccagggagggtcataggacagtgaaacccggccggtttgcctgtgaatgcgcaagcgtgaaccccctcgcccaccccctgagatct---cggggagctgctcatcgccaccttcc
s panTro4.chr8             54975016 154 + 143986469 ctcacatgaggcgtgcctcccttggca-gtcggctgttgcctggggagggtcataggacagtaaaacccggccggtttgcctgtgagggtgcaagcgtgagccccctcacccgccccctgagatcttctcagggagctgctaatcgccaccttcc
i panTro4.chr8             C 0 I 1069
s ponAbe2.chr8             59025279 150 + 153482349 ctcacttgaggcgtgcctccctcggca-gtcggatgttgcccagggagggtcataggacggtgaaacccggccggtttgcctgtgagtgcgcaagcgtgagccccctcgcctg-cccctgaaatct---cgggttgttgctcatcgccaccttcc
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48101466 154 + 100215132 ctcacttgaggagtgtctttttcggca-gtaggatgttgcccggggaaggtcatagggtagtgaaacctggccggtgtgcctgtgaggaggtgtgtgtgagccccctcgcctgcctcctgataccttcttgaggagctgctcatcaccaccttct
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61645388 154 + 150158102 ctcacttgaggcgtgcctttttcggca-gtaggatgttgcctggggagggtcatagggcagtaaaacctggccagtatgcctgtgaggaggtgtgtgtgagctcccttgtccgtctcctgagatcttcttggggagctgctcatcaccaccttct
i rheMac3.chr8             I 238 C 0
s macFas5.chr8             58379236 154 + 146850525 ctcacttaaggtattgttttttcaaaatgtaaggtgttctcagagacaggtcacaaatcaattaaa-atcaccatgttgcctcttactgcacacatctaagcccaccagctcaaatcctgagatattattatgaagctgctgatcaccaatttta
i macFas5.chr8             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221293          1179931   0 -   1495300 I
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730   0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e chlSab2.chr8             53244261 1950 + 139301422 T

a score=40556.000000
s hg38.chr8_KI270814v1_alt    55940 96 +    141812 agggtttctgtctgtctgggggactgcccgtccccggcg-gggctcccagcaatcatctgttatttgagagaggcagtttaatggtggcctgaccca
s ponAbe2.chr8             59025429 97 + 153482349 agggtttgtgtctgtctgggggactgccggtccctggcgcgggctcccagcaatcatctgttatttgagagaggcagtttaacggtggcctgacccg
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48101620 96 + 100215132 gggatttctgtctgttgggggcactgcc-gtccctggcgccccctcgcagccatcatttcttatttgagaaaggcaatttaacgatggcctgccccg
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61645542 97 + 150158102 ggaatttctttctgttgtggggactgcccatccctggtgacctctcccagccatcttttcttattttagaatggcaatttaacaacggcctgatccg
i rheMac3.chr8             C 0 T 2322
s macFas5.chr8             58379390 90 + 146850525 gatgtttctatttattg-gaaaactgcctttccctga-----gctagctgcaactaattattattttagaaaggtagtttaataaccacctcatct-
i macFas5.chr8             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221293          1179931  0 -   1495300 I
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730  0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e chlSab2.chr8             53244261 1950 + 139301422 T
e panTro4.chr8             54975170 1069 + 143986469 I

a score=177738.000000
s hg38.chr8_KI270814v1_alt    56036 187 +    141812 tcacctcctggtcacctgaggtgtcaggtg-gggtgtgggcgtggccctctcctgcgctgctcctgtctgaccagccgcccacggtaacaCAGAAACATCTGGCAGGATGGAGTGGTTGGCGGAAGACACATCTGACGAGATCGAATGTTTTGCAGAAGAGCCATGTGACCAGATCCCTGGTTTGGCA
s ponAbe2.chr8             59025526 187 + 153482349 tcacctcctggtcacctgaggtgtctggtg-gggtgtgggcgtggccctctcctgcactgctcctgtctgaccagccgcccacggtaacaCAGAAATATCTGGCAGGATGGAATGGGTGGTGGAAGACACTTCTGAGGAGATCGAATGTTTTGCAGAAGAGCCATGTGACTGGTTCCCTGGTTGGGCA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48101716 187 + 100215132 tcacttcctggtcacctgacgtatctggtg-gggtgtgggctagaccctcttaggcgctactcctgtgtgtccagccatccacagtaacaCGGAAACATCTGGCAGGATGGAATGGTTGGTGGAAGACACTTCTGATGAGGTCGAATGTTTTGCAGAAGAGCCGTGTGATCGGATCCCTGGTTTGGCA
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61643317 187 + 150158102 tcacctcctgttcacctgacatgtctggtg-gggtgtgggcggggccctctcctgcgctgctcctgtctgaccagctgcccacggtaacaCAGAAACATCTGGCAGGATGGAATGGTTGGCAGAAGACACGTCTGACGACATCAAATGTTTTGCAGAAGAGCCATGTGACTGGATCCCTAGTTTGGCA
i rheMac3.chr8             T 2322 C 0
s macFas5.chr8             58379480 184 + 146850525 tcaactcatggttttcttatattcctggtgaaggtgggagcgggg--cttttctgtcctgctcatatctgactaggtacctaATGT--CATGGGAACATCGGACAAGATTGAATGTTTGGCAGAAGAAACATCTGATAAGTTTGCACGTTAAGCAGAATAAACATCTGAGATGATTTCATGTTTGACA
i macFas5.chr8             C 0 T 60803
s chlSab2.chr8             53242311 187 + 139301422 tcacctcctggtcacctgacatgtctggtg-gggtgtgggtggggccctctcctgcgctgctcctgtctgaccagccacccacggtaacaCAGAAACATCTGGCAGGATGGAATGGTTGGCGGAAGAAATGTCTGATGACATCAAATGTTTTGCAGAAGAGCCATGTGACCGGATCCCCAGTTTGGCA
i chlSab2.chr8             T 1950 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221293          1179931   0 -   1495300 I
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730   0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e panTro4.chr8             54975170 1069 + 143986469 I

a score=123858.000000
s hg38.chr8_KI270814v1_alt    56223 144 +    141812 GAGGAGACATGCGAGAAGACGGA-ACGTTTTGGCCGAGGAGACATCTGGCAGGGTGGAACGGAGGGAACAGGTGTGGCAGAGAGAATATCTGAGAAGCTCGCAGGATTCCCAGAAGGAGCACTGGGAGTAGATTGCCTGTTTTCC
s ponAbe2.chr8             59025713 144 + 153482349 GAGGAGACATGCGAGAAGACGGA-ACGTTTTTGCCAAAGAGACATCTGGCAGGGTGGAACGGAGAGAACAGGTGTGGCAGAGAGAACGTCTGAGAAGCTCGCAGTATTCGCAGAAGGAGCATCGGGAGAAGATTGCCTGTTTGCC
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48101903 131 + 100215132 GAGTAGACATGTGAGAAGACTG--ACAGTTTCGTCGTTGAAACCTCTTA-AAGGTGGAAT-----------GTATGGCAGAAAGAACGTCTGAGAAGCTCACGCGATTTGCAGAAGGAACATTTGTAGAAGATTCCCTGTTTTCC
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61643504 144 + 150158102 GAG-GGACATGTGAGAGGACAGATACGTTTTGGCCGAAGAGACATCTAGCAGGGTGGAACAGAGAGAACAGGTGTGGCAGAGAGAAAGTCTGAGAAGCTTGCATGATTCGCAGAAGGAGCATCGGTAGAAGACTGCCTGTTTGCC
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58318861 132 + 146850525 GAGTAGGCATGCGAGAAGACTGA-ACATTTC-ATCGTTGAAACATCTTATAAGGTGGAAT-----------GTGTGGCAGAAAGAACATCTTAGAAGCTCATGTAGTTTGCAGAAGGAACATCTGTAGAAGATTCCCTATTTTCT
i macFas5.chr8             T 60803 I 60671
s chlSab2.chr8             53242498 144 + 139301422 GAGGAGACATGTGAGAGGACAGA-ACGTTTTGGCCGAAGAGACATCTGGCAGGGTGGAACAGAGAGAACAGGTGTGGCAGAGAGAACGTCTGAGAAGCTTGCACGATTCGCAGAAGGAGCATCGGTAGAAGATTGCCTCTTTGCC
i chlSab2.chr8             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221293          1179931   0 -   1495300 I
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730   0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e panTro4.chr8             54975170 1069 + 143986469 I

a score=207.000000
s hg38.chr8_KI270814v1_alt    56367 1 +    141812 C
s ponAbe2.chr8             59025857 1 + 153482349 T
i ponAbe2.chr8             C 0 C 0
s rheMac3.chr8             61643648 1 + 150158102 C
i rheMac3.chr8             C 0 C 0
s chlSab2.chr8             53242642 1 + 139301422 C
i chlSab2.chr8             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221293          1179931 0 -   1495300 I
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730 0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e nomLeu3.chr16            48102034 0 + 100215132 C
e macFas5.chr8             58318993 60671 + 146850525 I
e panTro4.chr8             54975170 1069 + 143986469 I

a score=247433.000000
s hg38.chr8_KI270814v1_alt    56368 283 +    141812 GAAGGAACGGCAAGTTCCAAAGGTCAGAGGCTCATGTGAACTC-TGTCGGGTTCAGGAGCAGCTCAGTGTTGCTGGTGGCAAGAGTGTGGTACGAGAGTGGTTGGGCGTGGTTTGAATATCTAGAAAAGGCGAGCTGAGGGTAGATTTTTGAACAGTCCGGAGTAGGAGGGGTAGAG-ACATATTCTATGGGCCACAGCCACATTCTCAGGATGCTCGTGGCTGTAAATAGTAGATGACCCA-----AGTAAGAGCGGCTGAAGCCATAGGCACCAGAATTGTGTTGGCA
s ponAbe2.chr8             59025858 284 + 153482349 GAAGGAAGGGCAAGTTCCACAGGTCAGAGGCTCATGTGAACTCTTATCAGGTTCAGGAGCAGCTCAGTGTTGCTGGTGGCAACAGTGTGGTATGGGAGTGGTTGGGCTTGGTTTGAATGTCTAGAAAAGGCGAGCCGAGAGTAGATTTTTGAACAGTCTGGAGTATGAGGGGTAGAGAACATATTCTGTGGGCCACGGCCACATTCTCAGGATGCTCGTGGCTGTAAATAGTAG-TGATCCA-----AGTAAGAGCGGCTGAAACCATAGGCACTAGAGTTGTGTCGGCA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48102034 283 + 100215132 GAAGGAACGTCAAGTTCCAAAAGTCAGAGACTCACATGAACTC-TTTACGTTTTAGGAACCGTACATTGTTGCTATTGTAAAGAGTGTGGTACTGACGTGGTTGGGCATGATTTGAATGTCTAGAAAA-GCGAGCTTAGGGAAGATTTTTGAGCAGTCCAGAGCAGGAGGGGTAGAGGATATATTCTGTGGGCCACGGCCACATTCTCAGGATGCTCGTAGCTTTAAATAGTAGTTGACCCA-----AATAACAGCAGCTGAAGCCATAGGCACCAGAGTTGTGTTGGCA
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61643649 283 + 150158102 Aaaggaacgtcaagttccaaaggtcagaggctcgcgtgaactc-tgtcaggttcaggagcagctcagtgttgctggtgcaag-agtgTGGTACAGAAGTGGTTGGGCGTGGTTTGAATGTCTAGAAAAGGTGAGCTGAGGGTAGATTTTTGAACAGTTCAGAGCAGGAGGGGTAGAGGATATATTTTGCGGGCCACGGCCACATTCTCAGGATGCTCTTGGCTGTAAATAGTAGATGACCCA-----AGTAAGAGCGGCTGAAGGCATAGGCACCAGAGCTGTGTCGGCA
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58379664 277 + 146850525 GAAGGAAGAGCAAGTGCAAAATGTTGTATGCTTGATTAATCTT-TGTAGTGTTTATGAGCAGTTACACTTTGCTAGTGGAAATAATGTGGCATGGGAGTGGT-----GTGGACTGAATACCTACATAAGGCAAGCTTCAGAAAGCCTTTT-AATAGTATATA----AATGAGTAGAT--CTTATTCTGTGGGCCAGGGAAAAATTCTCTGAATACTTCTGGCTGTGAATATTAGCTGACCTAACTATAATAACAATGACTAAAACCATGGGAACCAAAGTTGTTTTGGTG
i macFas5.chr8             I 60671 I 17
s chlSab2.chr8             53242643 281 + 139301422 AAAGGAACGTCAAGTTCCAAAAGTCAGAGGCTTGCGTGAACTC-TGTCAGGTTCAGGAGCAGCTCAGTGTTGCTGGTGCA---AGTGTGGTACAGAAGTGCTGGGGCGTGGTTTGAATGTCTAGAAAAGGCGAGCTGAGGGTAGATTTTTGAACAGTCCAGAGCAGGAGGGGTAGAGGATATATTTTGTGGGCCATGGCCACATTCTCAGGATGCTCTTGGCTATAAATAGTAGATGACCCA-----AGTAAGAGCAACTGAAGCCGTAGGCACCAGAGCTGTGTTGGCA
i chlSab2.chr8             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221293          1179931   0 -   1495300 I
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730   0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e panTro4.chr8             54975170 1069 + 143986469 I

a score=19590.000000
s hg38.chr8_KI270814v1_alt    56651 27 +    141812 TCGTCGTGTCACGCTCACGTTTTCCCT
s ponAbe2.chr8             59026142 27 + 153482349 TCGTCGTGTCACACTCACGTTTTCCCT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48102317 26 + 100215132 TCGTCGTGTCACGCTCACA-TTTCCCT
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61643932 27 + 150158102 TCATCATGTTATGCTCACATTTTCCCT
i rheMac3.chr8             C 0 C 0
s chlSab2.chr8             53242924 27 + 139301422 TCATCATGTCATGCTCACATTTTCCCT
i chlSab2.chr8             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221293          1179931  0 -   1495300 I
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730  0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e macFas5.chr8             58379941 17 + 146850525 I
e panTro4.chr8             54975170 1069 + 143986469 I

a score=3758.000000
s hg38.chr8_KI270814v1_alt    56678 6 +    141812 TCCAGC
s ponAbe2.chr8             59026169 6 + 153482349 TCCAGC
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48102343 6 + 100215132 TCTAGC
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61643959 6 + 150158102 TCCAGC
i rheMac3.chr8             C 0 I 2310
s macFas5.chr8             58379958 6 + 146850525 CTTAGC
i macFas5.chr8             I 17 C 0
s chlSab2.chr8             53242951 5 + 139301422 TCCAG-
i chlSab2.chr8             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221293          1179931 0 -   1495300 I
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730 0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e panTro4.chr8             54975170 1069 + 143986469 I

a score=60594.000000
s hg38.chr8_KI270814v1_alt    56684 69 +    141812 TGTGCTGTGGGCAGTGTTTACTTCATGTCTGCTTTGCTGGCGGGCCAAGTAGCAACAGCTGCAGTCGGC
s ponAbe2.chr8             59026175 69 + 153482349 TGTGCTGTGGGCACTGTTTAGTTCATGTCTGCTTTCCCGGCGGGCCAAGTAGCAACAGCTGTAGTCAGC
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48102349 69 + 100215132 CATGCTGTGGGCAGTTTTTAGTTCATGTGTGCTTTTCCGGTGGACTGAGTAGCAACAGCTGCAGTTGGC
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61646275 69 + 150158102 CATGCTGCAGGCAGTTTTTAGTTCATGTCTGCTTTTCCGGTGGACTGAGTAGCAACAGCTGCAGTTGGC
i rheMac3.chr8             I 2310 C 0
s macFas5.chr8             58379964 57 + 146850525 TGTGCTACTGGCAGTGTTTTGTCCAT------------GGTTGGCTAATTAGCAATGACTTCAATCATC
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53242956 69 + 139301422 TGTGCTGTGGTCAGTGTTTAGTTCATGTCTGCTTTCCCGGTGGGCCGAGTAGCAACAGCTGTAGTTGGC
i chlSab2.chr8             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221293          1179931  0 -   1495300 I
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730  0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e panTro4.chr8             54975170 1069 + 143986469 I

a score=205.000000
s hg38.chr8_KI270814v1_alt    56753 1 +    141812 G
s ponAbe2.chr8             59026244 1 + 153482349 G
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48102418 1 + 100215132 A
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61646344 1 + 150158102 G
i rheMac3.chr8             C 0 T 2312
s macFas5.chr8             58380021 1 + 146850525 A
i macFas5.chr8             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221293          1179931 0 -   1495300 I
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730 0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e chlSab2.chr8             53243025 0 + 139301422 C
e panTro4.chr8             54975170 1069 + 143986469 I

a score=193395.000000
s hg38.chr8_KI270814v1_alt    56754 193 +    141812 TGTTCTCTGAAGGCAGCGTGTGAAGGGTGGAGGGGTTGCTCTTCTTCCCAGGTGTCTTTTGAAGAGGCAGTCAAGTCAGCAGCTCACAGTGGCCTTCTGGTAACATCGTATGGGCTGGGTTACAGcacatgccgactgctaagccagtcactggggaaaaccatgtgattgctgtgatgagcttagaatgatc
s ponAbe2.chr8             59026245 193 + 153482349 TGTTCTCTGAAGGCAGTGTGTGAAGGGTGGAGGGGTTGCTCTTCTTCCCAGGTGTCTTTTGAAGAGGCAGTCAAGTCAGCAGTTCGCAGTGAGCTTCTGGTAACATCGTATGGGCTGGGTTACAGcacatgcccactgctaagccggtcactggggaagaccatgtgattgctgtgatgagcttagaatgatc
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48102419 193 + 100215132 TGTTGTCTGAAGGCAGTATCTGAGGTGTGGATGGGTTGCCCTTCTTCCCAGGTGTCTTTTCAACAGGGAGTCAAGTCTGCAGCTCATAGTGACCTTCCGGAAACATCATATGGTCTGTGTTACAGcacatgcctattgctaaacccatcactggggaaggccatgtgattcatgtgatgtgcttagaatgatc
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61644033 193 + 150158102 TGTAATCTGAAGGCAGTATCTGAAGGGTGAAGGGGTTGCTCTTCTTCCCAGGTATCTTTTGAAGAGGCAGTCAAGTCAGCAGCTCGCAGTGACCTTCCAGTAACATCGTATGGGCTGGGTTACAGcacatgcccactgccaagccagtcactggggaaggccatgtgattgctgtgatgagcttagaatggtc
i rheMac3.chr8             T 2312 C 0
s macFas5.chr8             58380022 182 + 146850525 TGTTCTCTGAAGACAGTATGTGAAGGCTGGAAGGGTTGCCTTTCTTCAC--GTTTCTTTTAAATAGGGAGTAAACTCAGATGCTTGCAGTGATCTTCCTGTAACATTTTA-------GGGTACA--acatgctcattcctaaacgagtcaatatgaaagcaaatgtagttactttgattagctaagaataatc
i macFas5.chr8             C 0 T 62944
s chlSab2.chr8             53243025 193 + 139301422 TGTTCTCTGAAGGCAGTATTTGAAGGATGAAGGGGTTGCTCTTCTTCCCAGGTGTCTTTTGAAGAGGCAGTCAAGTCAGCAGCTCGCAGTGACCTTCTGGTAACATTGTATGGGCTGGGTTACAGcacatgcccactgctaagccagtcactggggaaggccatgtgattgctgtgatgagcttagaatggtc
i chlSab2.chr8             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221293          1179931   0 -   1495300 I
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730   0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e panTro4.chr8             54975170 1069 + 143986469 I

a score=24159.000000
s hg38.chr8_KI270814v1_alt    56947 21 +    141812 attcctccttcaggagctggg
s ponAbe2.chr8             59026438 21 + 153482349 attcctcctttgggagctgga
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48102612 21 + 100215132 aTTTCTCTTTCGAgacctgag
i nomLeu3.chr16            C 0 T 2329
s rheMac3.chr8             61644226 21 + 150158102 attcctccttcaggagctggg
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58317260 21 + 146850525 attcctccttcaggagctggg
i macFas5.chr8             T 62944 C 0
s chlSab2.chr8             53243218 21 + 139301422 attcctccttcgggagctggg
i chlSab2.chr8             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221293          1179931  0 -   1495300 I
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730  0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e panTro4.chr8             54975170 1069 + 143986469 I

a score=68905.000000
s hg38.chr8_KI270814v1_alt    56968 56 +    141812 gtgggTTGAGGGAACGATAAAGATCCTGATAACCTTGCATTTCTCCAGCGAGAAAG
s ponAbe2.chr8             59026459 56 + 153482349 gtgggTTGCGGGAACGATAAAGATCCCAATAACCTTGCATTTCTTCAGCGAGAAAG
i ponAbe2.chr8             C 0 I 4
s nomLeu3.chr16            48100304 56 + 100215132 GTGGGTTGAGGGAACGATAAAGATCCTGACAACCTTGCGTTTCTCCAGAGAGAAAG
i nomLeu3.chr16            T 2329 C 0
s rheMac3.chr8             61644247 56 + 150158102 gtgggTTGAGGGAACAATAAAGATCCTGATAACCCTGTGTTTCTCCAGTGAGGAAG
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58317281 56 + 146850525 atgggTTGAGGGAACAATAAAGATCCTGATAACCCTGCGTTTCTCCAGTGAGGAAG
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53243239 56 + 139301422 gtgggTTGAGGGAACAATAAAGATCCTGATAACCCTGCGTTTCTCCAGTGAGGAAG
i chlSab2.chr8             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221293          1179931  0 -   1495300 I
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730  0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e panTro4.chr8             54975170 1069 + 143986469 I

a score=11655.000000
s hg38.chr8_KI270814v1_alt    57024 6 +    141812 AAGAAA
s panTro4.chr8             54976239 6 + 143986469 AAGAAA
i panTro4.chr8             I 1069 C 0
s ponAbe2.chr8             59026519 6 + 153482349 AAGAAA
i ponAbe2.chr8             I 4 C 0
s nomLeu3.chr16            48100360 6 + 100215132 AAGAAA
i nomLeu3.chr16            C 0 I 4
s rheMac3.chr8             61644303 6 + 150158102 AAGAAA
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58317337 6 + 146850525 AAGAAA
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53243295 6 + 139301422 AAGAAA
i chlSab2.chr8             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221293          1179931 0 -   1495300 I
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730 0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T

a score=846004.000000
s hg38.chr8_KI270814v1_alt    57030 508 +    141812 TTCCGTGGATAGGGAGCCAGCCAGGTTTCCTGCAGAGATTCACGGGAAGCTTTTGAGCAGGGGAGTCAGAAGATGAGCGGTGAGTATTAGGACTTTCCAGTCACGGCGTGACGcagggtttggccagttcttcctgtaaaggggcaggtgggaaacgcttgtaggcccggtggtctctgtcatgtctgctgaagcctgctgtagcagtgtggaagcagtcagagatgacacgtaagcaaatggtcctgactggcctctggtaaagcgtcgattccagaagcaTTTAACAGACCTAATAACCTTTCAAACCGCACAGGGTTTCTTTCCCAGGTCCTGTTTCAGGAAAGTTTTTGGCGGCTTACAAGGACTGTGTCCATCATGCTTGGGctctcttatctttcccaggatcctgaatagggcatcccccgttcatccatagggctctgggatgtcttggtcttactgtttccctgccaaacccggtgccatctcgtcatgatcacccact
s panTro4.chr8             54976245 508 + 143986469 TTCCGTGGATAGGGAGCCAGCCAGGTTTCCTGCAGAAAATCATGGGAAGCTTTTGAGCAGGGGAGTCAGAAGATGAGCGGTGAGTATTAGGGCTTTCCGGTCACGGCGTGACAcagggattggccagctcttcctgtaaagggccaggtgggaaacactcgtaggccccgtggtctctgtcgtgtctgctgaagcctgccgtagtagcgtggaagcagtcagagatgacgtgtaagcaaatggtcccgactgacctccagtaaagcattgattccggaagcaTTTAACAGACATAACAACCTTTCAAACCGCATGGCGTTTCTTTCCCAGATCCCGTTTCAGGAATGTTTCTGGTGGCTTACAAGGACCGTCTCCAGCATGCTTAGGctctcttaactttcctaggatcctgagtagggtatccgccattcgtccttagggctccgggatgtctcgttcttaccgtgtccctgccaaccctggtcccatctcgtcatgatcacccact
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59026525 508 + 153482349 TTCCGTGGATAGGGAGCCAGCCAGGTTTCCTGCAGAGAATCATGGGAAGCTTTTGAGCAGGGGAGTCAGAAGATGAGCAGTGAGTATTAGGGCTTTCCGATCACGGCGTGACGcagggtttggccagctcttcctgtaaagggccaggtgggaaacgcttgtagtccccgtcgtctctgtcatgtctgctgaagcctgccatagcagtgtggaagcagtcggagatgacacgtaagcaaatggtcctgactggcctccggtaaagcattgattccagaagcaTTTAACAGACCTAACAACCTTTCAAACCGCACAGCGTTTCTTTCTCGGGTCCTGTTTCAGGAATGTTTTTGGCGGCTTACAAGGACCATGTCCAACGTGCTTGGGctctcttatctttcccaggatcctgaatagggcaacccccattcatccttagggctctgggatgtctcggtcttactgtgtccctgccaaccccggtgccatcttgtcatgatcacccact
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48100370 508 + 100215132 TTCCGTGGATAGGGAGCCAGCCAGGTTTCCTGCAGAGATTCACGGGAAGCTTTTGAGCAGGGGAGTCAGAAGATGAGTGGTGAGTATTAGGGCATTCCAGTCATGGCATGACGcagggtttggccagctcttcctgtaaagggccaggtgggaaatgcttgtaggccccgtggtcgcggtcatatctgctgaagcttgccgtagcagtgtggaagcagtctgagatgacacataagcaaatggtcctgactggcctctggtaaagcgtcaattccagaagcaTTGAATAGACCTAACAACCTTTCAAACTGCATGGCGTTTCTTTCCCGGGTCCTGCTTCAGGAATGTTTCTGGTGGCTTACAAGGACCGTGTCCAATGTGCTTGGGctctcttatctttcccaggatcctgaatagggcatcccctattcatccttagggctctgggatgtctcggtcttactgtgtccctgccaatcccggtgccgtctcgtcactatcacccact
i nomLeu3.chr16            I 4 C 0
s rheMac3.chr8             61644309 508 + 150158102 GGCTGTGGATAGGGAGCCAGCCAGGTTTCCTGTGGAGATTCACAGGAAGCTTTTAAGCAGGGGAGTCAGAAGATGAGCAGTGAGTATTAGGGCATTCCAGTCACGGCGTGATGCAGGGATTGTCCTGCTCTTCCTGTAAAGGGCCAGGTGGGAAACACTCGTAGGCCCCGTGGTGGCTGTCATGTCTGCTGAGGCTTCCCGTAGTAGCGTGGAAGCTGTCAGAGATGACGCTTAAGCAAATGGTCCTGACTGGCCTCTGGTAAAGCGTCAATTCTGGAAGGATTTAACAGACCTAACAACCTTTCAAGCTGCATGGCGTTTCTTTCCCATCTCCCGTTTTGGAAATGTTTCTGGCGGCTTACAAGGACTATCTCCAACGTGCTTGGTCTCTCTTAACTTTCCCAGGAtcctgaatcgggcatccactgttcatccttactgctctgggatgtctcggtcttaccatgtccctgccaatcctggtcccatctcatcacgatcacccact
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58317343 508 + 146850525 GGCTGTGGATAGGGAGCCAGCCAGGTTTCCTGTGGAGATTCACAGGAAGCTTTTAAGCAGGGGAGTCAGAAGATGAGCAGTGAGTATTAGGGCGTTCCAGTCACGGCGTGATGcagggattgtcctgctcttcctgtaaagggccaggtgggaaacactcgtaggccccgtggtggctgtcatgtctgctgaggcttcccgtagtagcgtggaagctgtcagagatgacgcttaagcaaatggtcctgactggcctctggtaaagcgtcagttctggaAGGATTTAACAGACCTAACAACCTTTCAAGCTGCATGGCGTTTCTTTCCCATCTCCCGTTTTGGAAATGTTTCTGGCGGCTTACAAGGACTATCTCCAACGTGCTTGGTCTCTCTTAACTTTCCCAGGAtcctgaatcgggcatccactgttcatccttactgctctgggatgtctcggtcttaccatgtccctgccaatcctggtcccatctcatcacgatcacccact
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53243301 508 + 139301422 GGCTGTGGATAGGGAGCCAGCCAGGTTTCCTGCGGAGATTCACAGGAAGCTTTTAAGCAGGGGAGTCAGAAGATGAGCAGTGAGTATTAGGGCGTTCCAATCACGGTGTGATGcagggattgtcctgctcttcctgtaaagggccaggtgggaaacactcataggccccgtggtggctgtcatgtctgctgaagcctcccgtagtagcgtggaagcagtcagagatgacgcttaagcaaatggtcctggctggcctctggtaaagcgtcaattctggaAGGATTTAACAGACCTAACAACCTTTCAAACTGCATGGCGTTTCTTTCCCATCTCCCGTTTTGGAAATGTTTCTGGCGGCTTACAAGGACTATCTCCAACGTGCTTGGTCTCTCTTAAGTTTCCCAGGAtcctgaatcgggcatccactgttcgtccttactgctctgggatgtctcggtcttaccatgtccctgccaaccctggtcccatctcatcacgatcacccact
i chlSab2.chr8             C 0 I 452
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221293          1179931   0 -   1495300 I
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730   0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T

a score=397846.000000
s hg38.chr8_KI270814v1_alt    57538 335 +    141812 ggagaagagaggaggtgctggagtgaaccggttcgggg-aagccccattcatccctggggtcccagaatgaaccgttgttaccatgtgcccctgttcttgccttcctccctgctctaatggacgtgtgttagcctgggatcagccttggtctgggtgctatcgttctgttgcacctgtggcctttgtccggactctgtccttgtctgcgtgacgtgagagtgactgtgggtgagagcgttccagcaagacaatgatgatctctgctgtctgattcccacttcccagattctcacagtagacgaggagcctgtttttcagctagctgctgcaa-ggag
s panTro4.chr8             54976753 336 + 143986469 gtagaagacaggaggtgctagaatgaacagggtcaggg-gagccccgttcatccccagggtcccagaatgaagcagtgttaccatgtacccctgcccttgccttcctccctgctctaatggccatgtgttacctagagatcagttttggtctgggtgctatgggtctgttgcgcctgtggccttggtctggcctctgtccttgtctctgtgaaatgagagtgactgtgcctgagagcattccagcaagacaatgatgatctccactgtctgattccggcttcccatgttctcacagtagacgaggagcctgtttttcagctagctgccgcaaggggg
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59027033 336 + 153482349 ggagaagagaggaggtgctggagtgaaccgattcgggg-aagccccattcatccctggggtcccggaatgaaccggtgttaccatatgcccctgttcttgccttcttccctgctctaacggccatgtgttagcctgggatcagccttggtctgggtgctatgggtctgttgcgcctgtggccttggtccggcctctgtccttgtctctgtgaggtgagagtgactgtgggtgagagcattccagcaagacaatgatgatctctgctgtctgattcctgcttcccaggttctcacagtagacgaggagcctgtttttcagctagctgccgcaaggggg
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48100878 337 + 100215132 ggagaagagaggaggtgctggagtgaactggttcggggaaagccccgttcatccctggggtcccggaatgaaccagtgttaccatgtgcccctgcccttgccttcctccctgctctaacggccgcgtgttagcctgggatcagccttggtctgagtgctacgggtctgttgcgcctgcggccttggtccggcctctgtccttgtctctctgacgtgagagtgactgtgggtgagagcattccagcaagacaatgatgatctctgctgtctgattcccgcttcccaggttctcacagtagacgaggagcctgtttttcagctagctgccgcaaggggg
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61644817 332 + 150158102 ---gaagagaggaggtgctggagtgaacgtggttgggg-gagccccgttcatccccagggtcccagaatgaaccagtgttactgtgtacccctgatcttgccttcctccctgctctaacagccgtgtattagcctgggatcagctttggtcccagtgctattggtctgttgcgcctgcagccttggtccagcctctgtctttgtctccgtgacgtgagagtgactgtggctgagagcattccagcaagacaatgatgatctctgctgtctgattcccacttcccaggttctcacgatagatgaggagcctgtttttcagctagctgccgcaagggg-
i rheMac3.chr8             C 0 I 1
s macFas5.chr8             58317851 332 + 146850525 ---gaagagaggaggtgctggagtgaacgtggttgggg-gagccccgttcatccccagggtcccagaatgaaccagtgttactgtgtacccctggtcttgccttcctccctgctctaacagccgtgtattagcctgggatcagctttggtcccagtgctattggtctgttgcgcctgcagccttggtccagcctctgtctttgtctccgtgacgtgagagtgactgtggctgagagcattccagcaagacaatgatgatctctgctgtctgattcccacttcccaggttctcacgatagatgaggagcctgtttttcagctagctgccgcaagggg-
i macFas5.chr8             C 0 I 1
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221293          1179931   0 -   1495300 I
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730   0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e chlSab2.chr8             53243809 452 + 139301422 I

a score=13120.000000
s hg38.chr8_KI270814v1_alt    57873 10 +    141812 ctggacattt
s panTro4.chr8             54977089 10 + 143986469 ctggaaattt
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59027369 10 + 153482349 ctggacattt
i ponAbe2.chr8             C 0 I 370
s nomLeu3.chr16            48101215 10 + 100215132 ctggacattt
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61645150 10 + 150158102 ctggacattt
i rheMac3.chr8             I 1 C 0
s macFas5.chr8             58318184 10 + 146850525 ctggacattt
i macFas5.chr8             I 1 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221293          1179931  0 -   1495300 I
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730  0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e chlSab2.chr8             53243809 452 + 139301422 I

a score=63191.000000
s hg38.chr8_KI270814v1_alt    57883 51 +    141812 ctcccttcaaataggacctggaaggcctggaagcatctggagaagggcatg
s panTro4.chr8             54977099 51 + 143986469 ctcccttcagagtggacctggaaggcttggaagcatctggagaagggcgtg
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59027749 51 + 153482349 ctcccttcaaataggacctggaaggcctgggagcatctggagaagggcatg
i ponAbe2.chr8             I 370 C 0
s nomLeu3.chr16            48101225 51 + 100215132 ctcccttcaaataggaccgggaaggcctggaagcatctggagaagggcgtg
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61645160 51 + 150158102 cacccttcagataggacctggaaggcctggaaacatctggagaagggtgtg
i rheMac3.chr8             C 0 I 47
s macFas5.chr8             58318194 51 + 146850525 cacccttcagataggacctggaaggcctggaaacatctggagaagggtgtg
i macFas5.chr8             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221293          1179931  0 -   1495300 I
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730  0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e chlSab2.chr8             53243809 452 + 139301422 I

a score=31691.000000
s hg38.chr8_KI270814v1_alt    57934 55 +    141812 gctgtgagtagagaaacagaggatacaggctaaagcaggaggaagcgagag-----gact
s panTro4.chr8             54977150 60 + 143986469 gccacgagtagagaaatcgaggctacaggcagaagtgagaggaagcgagagaggaagact
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59027800 60 + 153482349 gctgtgagtagagaaacagaggctacgggctgaagcaggaggaagcgagagaggaagact
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48101276 60 + 100215132 gctgtcagtagagaaacagaggCTACAGGCTGAGGCAGGAGGAAGCGAGAGAGGAAGACT
i nomLeu3.chr16            C 0 C 0
s macFas5.chr8             58318245 48 + 146850525 actgtgagtagagaaaaggaCACTATTGGC----------GGAAGCAAGAGAGGAAGA--
i macFas5.chr8             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221293          1179931  0 -   1495300 I
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730  0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e rheMac3.chr8             61645211 47 + 150158102 I
e chlSab2.chr8             53243809 452 + 139301422 I

a score=66543.000000
s hg38.chr8_KI270814v1_alt    57989 39 +    141812 cacggaaagccttgctgcactctccaaaagagctgccct
s panTro4.chr8             54977210 39 + 143986469 catggaaagccttgctgcactcgccaaaagagctgccct
i panTro4.chr8             C 0 I 47550
s ponAbe2.chr8             59027860 39 + 153482349 catggagagccttgctgcgctctccaaaagagccgccct
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48101336 39 + 100215132 CACGGAAGACCTTGCTGCGCTGTGCAAAAGAGCCGCCCt
i nomLeu3.chr16            C 0 C 0
s rheMac3.chr8             61645258 39 + 150158102 CACGGAAAGCCTTGCTGTGCTCTCCAAAAGAGCCACCCT
i rheMac3.chr8             I 47 C 0
s macFas5.chr8             58318293 39 + 146850525 CACGGAAAGCCTTGCTGTGCTCTCCAAAAGAGCCGCCCT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53244261 39 + 139301422 CACGGAAAGCCTTGCTGTGCTCTCCAAAAGAGCCGCCCT
i chlSab2.chr8             I 452 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221293          1179931  0 -   1495300 I
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730  0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T

a score=2074167.000000
s hg38.chr8_KI270814v1_alt    58028 1673 +    141812 tttcacgtggtatgctgtccacattggctgtgtcctgttgacagctgggaggggccgtaggcatggcgtttttcctgcagttgcaggcactctcacttgaggcgtgtctttttcggcagtaggatgttgcccggggaaggtcatagggtagtgaaacctggcc----ggtatgcctgtgaggaggtgtgtgtgagccccctcgcctgcctcctgataccttcttggggagctgctcatcaccaccttctgggatttctgtctgttgggggcactg-ccgtccctggcgctgcctcccagccatcatttcttatttgagaaaggcaatttaacgacggcctgccctgtcacttcctggtcacctgacatatctggtggggtgtgggctagaccctctcatgcgctgatcctgtgtgtccagccatccacagtaacaCAGAAACATCTGGCAAGATGGAATGGTTGGTGGAAGACACTTCTGATGAGGTCGAATGTTTTGCAGAAGAGCTATGTGATCGGATCCCCGGTTTGGCAGAGTAGACATGCGAGAAGACTGAACGTTTCATCGTTGAAACCTCTTA-AAGGTGGAATGTGTGGCAGAAAGAACGTCTGAGAAGCTCACGCGATTTGCAGAAGGAACATTTGTAGAAGATTCCCTGTTTTCCGAAGGAATGTCAAGTTCCAAAGGTCAGAGACTCACATGAATTCTTTCCGTTTTAGGAACCATACATTGTTGCTATTGTAAAGAGTGTGGTACTGACGTCGTTGGGCATAATTTGAATGTCTAGAAAAAGTGAGC-TTAGGGAAGATTTTTGAGCAGTCCAGAACAGGAGGGGTAGAGGATATATTTTGCGGGCCACGGCCACATTCTCAGGATGCTCGTGGCTTTAAATAGTAGACGACCCAAATAATAGCAGCTGACGCCATAGGCACCAGAGTTGTGTTGGTATCGTTGTGTCATGCTCACA-TTTCCCTTCCAGCCATGCCGTGGGCAGTTTTTAGTTCATGTGTGCTTTTCCGGTGGACTGAGTAGCAACAGCTGCAGTTGGCGTGTTGTCTGAAGGCAGTATCTGAAGTGTGGATGGGTTGGTCTTCTTCCCAGGTGTCTTTTCAACAGGCAGTCAAGTCTGCAGCTCATAGTGACCTTCCGGAAACAtcatatggtctgtattacagcacatgcctattgctaaacccatcactggtgaaggccatgtgattcctgtgatgtgcttagaatgatcaTTTCTCTTTCGAgacctgagttaacaagtgcagggtttgactcag---ggtgtcatttgttggcaggctttcagggtagtgtttttgcctctcccctgatccttcctttgtgtgggtctc----ccagtgccgtggcctgtcagcccatgggttttgggtgtcacacgtgca-tgtggttcctggagtcttaggcatgtgctcttttcttacccattgagtgtttttagaggaaggttatggagctgctaaacccagcccttctggctgttaagtgtcctgcatgagcccacgcacctgattcctgggattttactgggaagctgctgatgtccaccttccggctcttttgttctttgggaggctgcccttttttggcaccggcaggctgcgaatggttttcttccatagaaacatttcaacaactgcctggccgtcatcta
s ponAbe2.chr8             59027899 1677 + 153482349 tttcacgtggtatgctgtccacatcggctgtgtcctgttgacagctgggaggggccgtaggcatggcgtttttcctgcagttgcaggcactctcacttgaggcgtgtcttttttggcagtaggatgttgcccggggaaggtcatagggtagtgaaacctggccatacggcatgcctgtgaggaggtgtgtgtgagccccctcgcctgcctcctgataccttcttggggagctgctcatcaccaccttctgggatttctgtctgttgggggcactg-tggtccctggcgccccctcccagccatcatttcttatttgagaaaggcaatttaacgacagcctgccccatcacttcctggtcacctgacatatctggtggggtgtgggctagaccctctcatgcgctgctcctgtgtatccagccatccacagtaacaCGGAAAGATGTGGCAGGATGGAATGGTTGGTGGAAGACACTTCTGATGAGGTCGAATGTTTTGCAGAAGAGCCATGCGATCGGATCCCGGGTTTGGCAGAGTAGACATGCGAGAAGACTGAACATTTCGTCGTTAAAACCTCTTA-AAGGTGGAATGTGTGGCAGAAAGGACGTCTGAGAAGCTCACGCGATTTGCAGAAGGAACATTTGTAGAAGATTCCCTGTTTTCCGAAGGAACGTCAAGTTCCAAAGGTCAGAGACTCACATGAACTCTTCCCGTTTTAGGAACCATACATTGTTGCTATTGTAAAGAGTGTGGTACTGATGTGGTTGGGCATGATTTGAATGTCTAGAAAAAGTGAGC-TTAGGGAAGATTTTTGAGCAGTCCAGAGCAGGAGGGGTAGAGGATATATTTTGCGGGCCACGGCCACATTCTCAGGATGCTCGTGGCTTTAAATAGTAGATGACCCAAATAACAGCAGCTGAAGCCATAGGCACCAGAGTTGTGTTAGCATCGTCACGTCATGCTCACA-TTTCCCTTCCAGCCATGCCGTGGGCAGTTTTTAGTTCATGTGTGCTTTTCCAGTGGACTGAGTAGCAACAGCTGCAGTTGGCGTGTTGTCTGAAGGCAGTATCTGAAGTGTGGATGGGTTGCTCTTCCTCCCAGGTGTCTTTTCAACAGGCAGTCAAGTCTGCAGCTCATAGTGACCTTCCAGAAACATCATATGGGCTGTGTTACAGcacatgcctattgctaaacccatcactggggaaggccatgtgattcctgtgatgtgcttagaatgatcaTTTCTCTTTCGAgacctgagttaacaagtgcaggatttgactcag---ggtgtcatttgttggcaggctttcagggtagtgtttttgcctctcccctgatccttcctttgtgtgggtctg----ccggtgccgcggcctgtcagcccatgggttttgggtgtcacatgcgca-tgtggttcctggagtcttaggcatgtgttcttttcttacctgttgagtgtttttagaggaagggtatggagctgctaaacccagcctttctggctgttaagtgtcctgcatgatcccacgcacctgattcctgggattttatcgggaagctgcagatgtccaccttccggctcttttgttctttgggaggctgcccatttttggcaccggcaggctgcgaacggttttcttccatagaaacatttcaacaactgcctgaccgtcatcta
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48101375 1677 + 100215132 tttcacgtggtgtgctgtccacattggctgtgtcctgttgacagctgggaggggccataggcatggcgtttttcctgcagttgcaggcactctcacttgaggagtgtctttttcggcagtaggatgttgcccggggaaggtcatagggtagtgaaacctggcc----ggtgtgcctgtgaggaggtgtgtgtgagccccctcgcctgcctcctgataccttcttgaggagctgctcatcaccaccttctgggatttctgtctgttgggggcactg-ccgtccctggcgccccctcgcagccatcatttcttatttgagaaaggcaatttaacgatggcctgccccgtcacttcctggtcacctgacgtatctggtggggtgtgggctagaccctcttaggcgctactcctgtgtgtccagccatccacagtaacaCGGAAACATCTGGCAGGATGGAATGGTTGGTGGAAGACACTTCTGATGAGGTCGAATGTTTTGCAGAAGAGCCGTGTGATCGGATCCCTGGTTTGGCAGAGTAGACATGTGAGAAGACTGACAGTTTCGTCGTTGAAACCTCTTA-AAGGTGGAATGTATGGCAGAAAGAACGTCTGAGAAGCTCACGCGATTTGCAGAAGGAACATTTGTAGAAGATTCCCTGTTTTCCGAAGGAACGTCAAGTTCCAAAAGTCAGAGACTCACATGAACTCTTTACGTTTTAGGAACCGTACATTGTTGCTATTGTAAAGAGTGTGGTACTGACGTGGTTGGGCATGATTTGAATGTCTAG-AAAAGCGAGC-TTAGGGAAGATTTTTGAGCAGTCCAGAGCAGGAGGGGTAGAGGATATATTCTGTGGGCCACGGCCACATTCTCAGGATGCTCGTAGCTTTAAATAGTAGTTGACCCAAATAACAGCAGCTGAAGCCATAGGCACCAGAGTTGTGTTGGCATCGTCGTGTCACGCTCACA-TTTCCCTTCTAGCCATGCTGTGGGCAGTTTTTAGTTCATGTGTGCTTTTCCGGTGGACTGAGTAGCAACAGCTGCAGTTGGCATGTTGTCTGAAGGCAGTATCTGAGGTGTGGATGGGTTGCCCTTCTTCCCAGGTGTCTTTTCAACAGGGAGTCAAGTCTGCAGCTCATAGTGACCTTCCGGAAACATCATATGGTCTGTGTTACAGcacatgcctattgctaaacccatcactggggaaggccatgtgattcatgtgatgtgcttagaatgatcaTTTCTCTTTCGAgacctgagttaacaagtgcagggtttgactcag---ggtgtcatttgttggcaggctttcagggtagtgtttttgcctctcccctgatccttcctttgtgtgggtctgtccaccggtgccatggcctgtcagtccatggttttggggtgtcacacgtgcagtgtggttcctggagtcttaggcatgtgctcttttcttacccattgagtgttcttagaggaagggtatggagctgctaaacccagcccttctggctgttaagtgtcctgcatgagcccacgcacctgattgctgggattttactgggaagctgctgatgtccaccttccggctcttttgttctttgggaggctgcccttttttggcaccagcacgttgcgaacagttttcttccatagaaacatttcaacaactgcctgactgtcatctA
i nomLeu3.chr16            C 0 M 100
s rheMac3.chr8             61645297 1680 + 150158102 TTTTGCATggtgggctgtccacatcggcggtgtcctgttgacagctgggaggggccacaggcatgacatttttcctgcagttgtaagtgctctcacttgaggcgtgcctttttcggcagtaggatgttgcctggggagggtcatagggcagtaaaacctggcc----agtatgcctgtgaggaggtgtgtgtgagctcccttgtccgtctcctgagatcttcttggggagctgctcatcaccaccttctggaatttctttctgttgtggggactgcccatccctggtgacctctcccagccatcttttcttattttagaatggcaatttaacaacggcctgatccgtcatgtcctggtcacctgacatatctggtggcgtgtgggctagaccctctcctgcactgctcctgtgtgtccagccacccacagtaacaTGGAAACATCTGGCAGGATGAAATGTTTGGTGGAAGACACTTCTGATGAGGTCGAATGTTTTGCAGAAGAACTATGCGATTGGATCCCTGCTTTGACAGAGTAGGCATGCGAGAAGACTGAACATTTCATCGTTGAAACATCTTATAAGGTGGAATGTGTGGCAGAAAGAACATCTTAGAAGCTCATGTAGTTTGCAGAAGGAACATCTGTAGAAGATTCCCTATTTTCTGAAGGAACGTCAAGTTCCAAAGGTCAGAGACTCACATGAAGTCGTATCGTTTTAGGAACCGCACATTGTTGCTCTTGGAAAGAGTGTGGTACTGATGTGGTTGGGCATGATTTGAATGTCTAGAAAAAGTGAGC-TTAGGGAAGATTTTTGAGCAATCCAGAGCAGGAGGGGTAGAGGATATATTTTGCGGGCCATGGCCACATTCTCAGGATGCTGTTGGCTATAAATAGTAGATGACCCAAGTAAGAGCGACTGAAGCCATAGGTACCAGAGTTGTGTTGGCATCATCATGTCACGCTCACGTTTTCCCTTCCAGCCATGCTGCAGGCAGTTTTTAGTTCATGTCTGCTTTTCCGGTGGACTGAGTAGCAACAGCTGCAGTTGGCGTGTTGTCTGAAGGCAGTATCTGAAGTGTGGATGCGTTGGTCTTCTTCCCAGGTGTCTTTTGAAGAGGGCGTCAAGTCAGCAGCTCACAGTGACCTTCCGGAAATGTCATATGGGCTGTGTTACAGCACATGCCTATTGC-AAACCTGTCACTAGGGAAGGCCACGTGATTCCTGTGATGTGCTTAGAATGATCATTTGTCTTTTGAgacctgagttaacaagtgcagggtttgactcaa---ggtatcatttgttggcaggctttcagggtggtgtttttgcctctcccctgatccttccttcgggtgggtctgtccactggtgcagcagcctgtcagcccatgggttttgggtgtcacacgcgcagtgcagttcctagagtcttaggcttgtgcccttttcttacccattgagtgttcttacaggaagggtatggagctgctaaacccaaccgttctggctgttaggtgtcctgcatgagcccacgcacatgattcctgggattttaccaggaagctgctgatgtccaccttccagctcttttgtcctttgggaggctgcccttttttggcactggcaggctgcgaacggttttcctccaaagaaacgtttcaacaactgcctgaccatcatcta
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58318332 1680 + 146850525 TTTTGCATggtgggctgtccacatcggcggtgtcctgttgacagctgggaggggccacaggcatgacgtttttcctgcagttgtaagtgctctcacttgaggcgtgcctttttcggctgtaggatgttgcctggggagggtcatagggcagtaaaacctggcc----agtatgcctgtgaggaggtgtgtgtgagctcccttgtccgtctcctgagatcttcttggggagctgctcatcaccaccttctggaatttctttctgttgtggggactgcccatccctggtgacctctcccagccatcttttcttattttagaatggcaatttaacaacggcctgatccgtcatgtcctggtcacctgacatatctggtggcgtgtgggctaggccctctcctgcactgctcctgtgtgtccagccacccacagtaacaTGGAAACATCTGGCAGGATGAAATGGTTGGTGGAAGACACTTCTGATGAGGTCGAATGTTTTGCAGAAGAACTATGCGATTGGATCCCTGGTTTGACAGAGTAGGCATGCGAGAAGACTGAACATTTCATCGTTGAAACATCTTATAAGGTGGAATGTGTGGCAGAAAGAACATCTTAGAAGCTCATGTAGTTTGCAGAAGGAACATCTGTAGAAGATTCCCTATTTTCTGAAGGAACGTCAAGTTCCAAAGGTCAGAGACTCACATGAAGTCGTATCGTTTTAGGAACCGCACATTGTTGCTCTTGGAAAGAGTGTGGTACTGATGTGGTTGGGCATGATTTGAATGTCTAGAAAAAGTGAGC-TTAGGGAAGATTTTTGAGCAATCCAGAGCAGGAGGGGTAGAGGATATATTTTGCAGGCCATGGCCACATTCTCAGGATGCTCTTGGCTATAAATAGTAGATGACCCAAGTAAGAGCGACTGAAGCCATAGGTACCAGAGTTGTGTTGGCATCATCATGTCACGCTCACGTTTTCCCTTCCAGCCATGCTGCAGGCAGTTTTTAGTTCATGTCTGCTTTTCCGGTGGACTGAGTAGCAACAGCTGCAGTTGGCGTGTTGTCTGAAGGCAGTATCTGAAGTGTGGATGCGTTGGTCTTCTTCCCAGGTGTCTTTTGAAGAGGGCGTCAAGTCAGCAGCTCACAGTGACCTTCCGGAAATGTCATATGGGCTGTGTTACAGCACATGCCTATTGC-AAACCCGTCACTAGGGAAGGCCACGTGATTCCTGTGATGTGCTTAGAATGATCATTTGTCTTTTGAgacctgagttaacaagtgcagggtttgactcaa---ggtgtcatttgttggcaggctttcagggtggtgtttttgcctctcccctgatccttccttcgggtgggtctgtccactggtgccgcagcctgtcagcccatgggttttgggtgtcacatgagcagtgcagttcctagagtcttaggcttgtgcccttttcttacccattgagtgttctcacaggaagggtatggagctgctaaacccaaccgttctggctgttaggtgtcctgcatgagcccacgcacatgattcctgggattttaccgggaagctgctgatgtccaccttccagctcttttgtcctttgggaggctgcccttttttggcactggcaggctgcgaacggttttcctccaaagaaacgtttcaacaactgcctgaccatcatcta
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53244300 1660 + 139301422 TTTTGCATggtgggctgtccacatcggcggtgtcctgttgacagctgggaggggccacaggcatgacgtttttcctgcagttgtaagtgctctcccttgaggcgtgcctttttcggcagtaagatgttgcctggggagggtcatagggcagtaaaacctggcc----agtatgcctgtgaggaggtgtgtgtgagctcccttgcccgtctcctgagatcttcttggggagctgctcatcaccaccttctggaatttctgtctgttgtggggactgcccatccctggcgacccctgccagccatcttttcttattttggaatggcaatttaacagcggcctgacctgtcatgtcctggtcacctgacatctctggtggggtgtgggctaggccctctcctgcactgcttctgtgtgtccagccacccatggtaacaTGGAAACATCTGGCAGGATGGAATGGTTGATGGAAGACACTTCTGATGAGGTCGAATGTTTTGCAGAAGAACTATGTGATTGGATCCCTGGTTTGACAGAGTAGGCATGCGAGAAGACTGAACGTTTCATCGTTGAAACATCTTATAAGGTGGAATGTGTGGCAGAAAGAACGTCTTAGAAGCTCATGCAGTTTGCAGAAGGAACATCTGTAGAAGATTCCCTGTTTTCTGAAGGAACGTCAAGTTCCAAAGGTCAGAGACTCACATGAAGTCGTTTCGTTTTAGGAACCGCACATTGTTGCTCTTGGAAAGAGTGTGGTACTGATGTGGTTGGGCATGATTTGAATGTCTAGAAAAAGTGAGCTTTAGGGAAGATTTTTGAGCAGTCCAGAGCAGGAGGGGTAGAGGATATATTTTGCAGGCCACGGCCACATTCTCAGGATGCTTTTGGCTGTAAATAGTAGATGACCCAAGTAAGAGCGACTGAAGCCATAGGCACCAGAGCTGTGTTGGCATCGTCATGTCACGCTCACATTTTCCCTTCCAGCCATACTGCAGGCAGTTTTTAGTTCATGTCTGCTTTTCCGGTGGACTGCGTAGCAACAGCTGCAGTTGGCGTGTTGTCTGAAGGCAGTATCTGAAGTGTGGATGCATTGCTCTTCTTCCCAGGTGTCTTTTGAAGAGGGAGTCAAGTCAGCAGCTCACAGTGACCTTCCGGAAATGTCATATGGGCTGTGTTACAGCACATGCCTATTGC-AAACCCGTCACTAGGGAAGGCCACGTGATTCCTGTGATGTGCTTAGAATGATCATTTCTCTTTCGAgacctgagttaacaagtgcagggtttgactcaaggtggtgtcatttgttggcaggctttcagggtggtgtttttgcctctcccctgatccatccttcgggtgggtctgtccactggtgccgtggcctgccatcctgtgggttttgggtgtcacacgcgcagtgcggttcctagagtcttaggcttgtgcccttttcttaccc------------------------atggagctgctaaacccagccgttctggctgttaggtgtcctgcatgagcccacgcacgtgattcctgggattttaccagaaagctgctgatgtccagcttccagctcttttgtcctttgggaggctgcccttttttggcactggcaggctgcgaacggttttcctccaaagaaacgtttcaacaactgcctgaccatcatcta
i chlSab2.chr8             C 0 C 0
e ornAna1.Ultra479          3871811  995 -   6008416 T
e tetNig2.chr13             4300044  851 -  13302670 T
e punNye1.JH419232          4767720  338 +   5065651 T
e mayZeb1.JH720588          2493684  338 +   2778784 T
e hapBur1.JH425411          1657068  338 +   1983257 T
e neoBri1.JH422276          4185134  338 -  16571924 T
e araMac1.KE026486             3582  666 -     24340 T
e astMex1.KB882082          3904961  703 -   8876373 T
e takFla1.KE120500           511214  428 +    663757 T
e fr3.chr9                  3741472  428 -  13922460 T
e ficAlb2.chr1A            24321356  629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221293          1179931    0 -   1495300 I
e zonAlb1.KB913045         12582078  625 +  16390125 T
e colLiv1.KB375358          1019695  647 +   1462937 T
e allMis1.JH737798            79979  829 +    106177 T
e falPer1.KB391107          2216113  646 -   3101084 T
e falChe1.KB398074          4263496  646 -   7151304 T
e macEug2.GL108065            83888  651 -    187545 T
e galGal4.chr1             24067632  655 + 195276750 T
e geoFor1.JH739914          5157808  631 -   7168866 T
e melGal1.chr1             24929366  674 + 204065131 T
e anaPla1.KB743807             6030  614 +     81650 T
e amaVit1.KB277496             7479  640 -     10329 T
e apaSpi1.KB929668          5961518  314 -  12308914 T
e cheMyd1.KB478633          2433661  653 +   6037886 T
e chrPic2.chr2             18523590  672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730    0 - 304825324 I
e taeGut2.chr1A            23692651  539 +  73657157 T
e panTro4.chr8             54977249 47550 + 143986469 I

a score=113120.000000
s hg38.chr8_KI270814v1_alt    59701 132 +    141812 atggttgtctgacatttctcgtggtggtgggggaagcccctcataccctgcttatgtcagaccagttacctaGAGTGACTGGAATGTCTGACAGGATTGCACATTTGGCAGAAGAACGTCCGAGAAGATTCA
s ponAbe2.chr8             59029576 132 + 153482349 atggttgtctgacatttctcatggtggtgggggaagcccgtcgtaccctgcttatgtcagaccagctacctaGAGTGACTGGAATGTCTGACAGGATTGCACATTTGGCAGAAGAACATCCGAGAAGATTCC
i ponAbe2.chr8             C 0 C 0
s rheMac3.chr8             61646977 132 + 150158102 ctggttgtctgacatttctggtggtggtgggggaaacccctcataccctgctcatgtcagtccagctacctGGAGTGACTGGAATGTCTGACAGGATTGCACATTTGGCAGAAGAACATCTGAGACGATTCA
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58320012 132 + 146850525 ctggttgtctgacatttctggtggtggtgggggaaacccctcataccctgctcatgtcagtccagctacctGGAGTGACTGGAATGTCTGACAGGATTGCACATTTGGCAGAAGAACATCTGAGACAATTCA
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53245960 132 + 139301422 ctggttgtctgacatttctggtggtggtgggggaagcccctcataccctgctcatgtcagtccagctacctGGAGTGACTGGAATGTCTGACAGGATTGCACATTTGGCAGAAGAATATCTGAGACGATTCA
i chlSab2.chr8             C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221293          1179931   0 -   1495300 I
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730   0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e nomLeu3.chr16            48103052 100 + 100215132 M
e panTro4.chr8             54977249 47550 + 143986469 I

a score=4794205.000000
s hg38.chr8_KI270814v1_alt    59833 3817 +    141812 GTGTTTGGCAGAAGAAACCTCTGTCAGACGTGAACGTGTGACAGAAGGGCCATCCAGGAAGATTGCACACTGGGCAGAAAGAAGACTTAAGAACATTGCATGGACAGCAGAAGGAGTGCTTCGGGAGATTGCCTGGTGGGCGCCAGGAACACCTGAGATGATGTCATGGCAAACAGTGGAAATgagaggtttacatttaatgtcttgtttacataaggtagtaaactctggagcacttgtggttaggggtgaaaactcaccctgggtgaaggaagaatcttccctcttcccagaggggcaatgactggaaacgagcaagtaggtggggtctttaaagggccacagtactaggctctatcctgacagctgttcagactgccccaaaaggcttgtgagaagttgttgctagggcataacaggaCAGTTagattaagagtaggagtgatagcttcttcaacactttggagcaggaaggaatggaagcaagatacagttggaagagggtgtagtgggtgacttgatgaatcgagttcatggtattatttttgacttggattctccttcattggcatgcttctgagttggcgtcattgcctctgccctgatccttcccttgagtggggctgttcaccagtgcagcggccagtgagctctttgggcggggtgtgtggcatacacagtgcgatgtctggaatcttacacgtgcttacttgaggcat---tcttactccaccggtcgagtgttctcaaagaaagatgatggagctgctaaaccttgcccattttgATctgttatgtgagacttgcctttcgccttctgtcatgattgtgaagtgtccccagccatgtggaactgtgagtccattaatcttttttccatttaaattaccctctctcaggtatgtttttgtcagcagttttaaaacagactaatTTTAGAAGCTTGGCCCTAGTTCTTTGTAGGCCTTTCAATATTAAAAATGtccaatattgaatattaaaagtattcagtatttctattaaactcttgagtcattggggt---------tccaatcagggttgtcaatatgtactgcccctcttccttttggtaatggagtttcccttgtttcttttctttccctattttgtcttgcatttttatttatttatttatttttatatgtttttttgtcgcactgtaggacacatattgcttgtctctgaacttctcagctgcctgcagatcttcctgtttttcagctgcagttagggtttgtctgaggagaagcataacatccctccaggtaaggtccgacacctgagttaaattttggaaagcttctttatacctgtcagggtcattcgaaaaccagcctaattctctttatctgcctgtggttctgcaatgagaagggaactggaaccttagtgacattgtctccattaggcattgcctgcagtggtaagcgtcagactgtggaatgaggagtgatgacactggaggggctgacattgcatttggaaggggccctgaataagggggaccaagaggggcctgaac-------aactgccttagatgtttttcccagaatttgtttcgctagtgtgggggagttacttcctttgggcctgcctgatatgactgttaaaatagctgtgttgattgtgcaatgcttacaaatgtctagtaacctttggttctccactggtga------ttgtttttttttgactttgtaaacctgtgtgacctgtatggttcctcaatagatggatcttggaaaataggatgtaatagttgtatttgggcaaggcctctttaatggagacagtgtactgagttgagctctctattttgctatcatggcctcgagtcatgtacttattcttaggcagtgattctggttaactttcagacataaaatgttactatttaagtaacatgttaattggaggcagaataggtgccttaaaataatgtaaggaatgaaaggtggttttcctgctcatgggacagtactggggctaaaacttcattttggaggacattttccccctcattgttgagttttcccattcacagaagcagcataaagcctggtctctagtagagagtgcaaaagt---gagaattcagaaactagaatgtttcagcaaagggctgacaagctgtctcatggagaggattctaattgcaataggtggtgctgttgaccttgaaataccatgtgctctacagaccaagggctgagagagagagagagagagagagagagagagagagagagagagtcgttcactggatgggatgggtgagaccctctgtttctagaaaatcacaaaaatggcactcccttgatctatattcccagttaccagagcatttccaaatcttgcctaacaggattatttccctgagctttaaaaatttctgcagcattgcacacacacagtagataagagacatggttgtcttagacaggaaaggaggaaaattgcaataggaaaggctccaagatcctgttgcagatgcccatccggcagtc--agagggtggagttagtccagaagcctttgggtaacagtggggtatggtcctgggaaggaagcattagttgcctctggacctcttccagacccacatgacacctaggctgtctgtgaaagaaaactggttcaaaagagagtcaacattcccagcactttgagggccctgggggattcactaagttttctctgttgtcttagtattgagaatggttgccaccctaaagg--tttttttaatttgctatcagttgcccagtttttagtttataattttaaagttgagggcagaagccctcaaaatcaaagtaaaggtttagggtccactcctctactcacctttccgatgaatctaccttggatccccaaccagcccccacaatgaaatggcattattgtctgtggtaaatatctgagattcgttgtctcacagacctggaaaactaggccacagacactcagagtgaggctcagagcagaagtttaataggtgaaagaaagagaaaagctctcttgctacagagaagggtcccagagaaatgggttgctggttcggcagtgaagtgcaaggggctttatagatgagcttgaagtggggaggtgtctgatttacctaagacacaaaagattggtttgaccaggtgtgccatttgcatagggcatgaaaagctggctgcccccaccataaccttttattatgcagatggcttttctgcctggccagtgtcacattgccctttt---------------ttctttttttttcttttttactgtaaacatagtaacaataaaagggaagatggagcctctgtgttggacatgcctggcccccaggtagcccttttctattggcgcagctactagcatCCTAAATCATTTATTTCTACCTCCTGTATCA-TGgcagcagatctgtatgggtctgcagcaacctcaattcttgtcttctaagaagaaagaatttgactgaagggagtaagccagagggagagaccaaggaaagttttaaaacaggagtgaaagtttattaaacagcatcagaataagagccaaaggtaataaagtacatctggaagtgggccaaacgggtgacctgagagatcaagtgcatggtttgatttttgacttggggtctcataggttagcaggcttcggggat--tgttttttctcactgatgcttcccttggggcaggttgtccacatgcagagtggtccatcagcacttggtaggggctgaatgtgcagtatggttactggagttgtatgcacgctcgcttgatgtgttcctcctgaaccagtcaaatgttgccagagaaaggtactagag
s ponAbe2.chr8             59029708 3784 + 153482349 GTGTTTGGCAGAAGAAACCTTTGTCAGACGTGAACGTGTGACAGAAGGGCCATCCAGGAAGATTGCACACTGGGCAGAAAGAAGACTTAAGAACATTGCATGGACAGCAGAAGGAGTGCTTCGGGAGATTGCCTGGTGGGTGGCAGGAACACCTGAGATGACGTCATGgcagacagtggaaatgagaggtttacatttaatgccttgtttacataaggtagtaaactctggagtacttgtggttaggggcgaaaactcaccctgggtgaaggaagaatcttccctcttcccagaggggcaatgactggaaacgagcaagtaggt-gggtttttaaagggccacattgctaggctctatccagacagctgttcagactgccccaaaaggcttctgagaagttgttgctagggagtaacaggaCAGTTagattaagagtaggagtgatagcttcttcaacgctttggagcaggaaggaatggaagcaagatacagttggaagagggtgtagtgggtgacttgatgaatcgagttcatggtattatttttgacttaggttctccttcgttggcatgcttctgagttggcgtcattgcctctgccctgatccttccctcgggtggggctgttcaccaacgcagcggccagtgagatctttgggcggggtgtgtggcatacacagtacaatgtctggaatcttacacgtgcttacttgaggcat---tcttactccaccggtcaagtgttctcagagaaagatgatggagctgctaaaccttgcccattttgatctgttatgtgagacatgcctttcgccttctgtcatgattgtgaagtgtccccagccatgtggaactgtgagtccattaatcttttttccatttaaattaccctctcttaggaatgtttttgtcagcagttttaaaatggactaatTTTAGACGCTTGGCCCTAGTTCTTTGTAGGCCTTTCAATAGGAAAAATGtccaatattgaatattaaaagtattcagtatttctgttaaactcttgagtcattggggt---------tccaatcagggtcgtcaatatgtactgcccatcttccttttggtaatggagtttcccttgtttcttttctttccttattttatcttgcattcctatttatttattta--tttatatg-gtttttgtcgcactgtaggatacatattgcttgtctctgaacttctcagctgcctgcagatcttcttgttttttagctgcagttagggtttgtctgagaagaagcataacatccctccatgtaaggtccgacacctgagttaaattttggaaagcttctttatacctatcagggtcattcgaaaaccagcctaattctctttatctgcctgtggttctgcaatgagaagggaactggaatcttagtgacattgtctccattaggcatttcctgcagtggtaagtgtcagactgtggaatgaggagtgatgacactggaggggctgacattgcatttggaaggggccctgaataagggtgaccaagaggggcctgaacactcaataactgccttagatgtttttcccagaatttgtttcgctagtgtgggggagtgacttcctttgggcctgcctgatatgactgttaaaagagctgtgttgattgtgtaatgcttacaaaggtctagTAACCTTTGGTTCTGTACTGGTGA------TTG-ttttttttgactttgtaaacctgtgtgacctgtatggttcctcaatagatggatcttggaaaatagtatgtaatagttgtatttgggcaaggcccctttaatggaggcagtgtactgagttgagctctatattttgctatcatggcctcgagtcatgtatttattcttaggcagtgattctggttaactttcagacataaaatgttactatttaagtaacatgttaattggaggcagaacaggtgccttaaaataatgtaaggaatgaaaggtggttttcctgctcatgggacagtactgggcctaaaacttcattttggaggacatttgcctcctcattgttgagttttcccattcacagaagcagcatgaagcctggtctctagtagagagtgcaaaagt---gagaattcaaaaactagaatgtttcagcaaagggctgacaaggtgtctcatggagaggattctaattgcactaggtggtgctgttgaccttgaaataccatgtgctctacagaccaagggct--------------------------gagagagagagagagagtcgttcactgggtgggatgggtgagaccctctgtttctagaaaatcacaaaaatggcactcccttgatctatattcccagttaccagagcatttccaaatcttgcctaacaggattatttccctgagctttaaaaatttctgcagcattgcacacacacagtagataagagacatggttgtcttagacaggaaaggaggaaaattgcaataggaaaggctccaagatcctgttgctgatgcccatctggcagtt--ggagggtggagttagtccagaagcctttgggtaacagtggggtgtggtcctgggaaggaagcattagttgcctctggacctcttccagacccacatgatacctaggctgtctgtgaaagaaaactggttcaaaacagagtcaacattcccagcactttgagggccctgggggattcactaagttttctctgttgtcttagtattgagaatggttgccaccctaaagg--tttttttaatttgctatcagttgcccagttttcagtttataattttaaagttgagggcagaaggcctcaaaatcaaagtaaaggtttagggtccactcctctactcacctttccgatgaatctaccttggctccccaaccagcccccacaatgaaatggcattattgtctgtggtaaatatctgagattcgttgtctcacagacctgaaaaactaggccacagacactcagagtgaggctcagagcagaagtttaatagttgaaagaaagagaaaagctctcttgctacagagaagggtcccagggaaatgggttgctggttcggcagtgaagtgcaaggggctttatagatgagcttgaagtggg--ggtgtctgatttacgtaagacacaaaagattggttcgaccagatgtgccatttgcatagggcatgaaaagctggcttcccccaccataaccttttattatgcagatggcttttctgcctggccagtgtcgtattgccc-------------------------ttttttcttttttactgtaaacatagtaacaataaaagggaagatggagcctctgtgttggacatacctggcccccagGTAGCCCTTTTCTATTGCCGCAGCTGCTAGCATCCTAAATCATTTATTTCTACCTCCTGTAACAGTGgcagcagatctgtatgggtctgcagcaacctcaattcttgtcttctaagaagaaagaatttgactgaagggagtaagccagagggagagaccaaggaaagttttaaaacaggagtgaaagtttattaaacagcatcagaataagagccaaaggtaataaagtacatctggaagtgggccaagcgggtgacctgagagatcaagtgcatggtttgatttttgacttggggtctcataggttagcaggcttcagggattgtgtttcttctcgctgatgcttcccttggggcaggttgtccacatgcaaagtggtccatcagcacttggtaggagctgaatgtgcagaatagttactggagttgtatgcatgctcacttgatgtgttcctcctgaaccagtcaaatgttgccagagaaaggtactagag
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48103152 3772 + 100215132 GTGTTTGGCAGAAGAAACCTCTGTCAGATGTGAACGTGTGACAGAAGGACCATCCGGGAAGATTGCACACTGGGCAGAAAGAAGACTTAAGAACATTGCATGGACAGCAGAAGGAGTGCTTCGGGAGATTGCCTGGTGGGCAGCGGGAACACCTGAGATGACTTCATGgcagacagtggaaatgagagatttacatttaatgccttgtttacataaggtagtaaactctggagcacttgtggtca-gggcgaaaactcaccctgggtgaaggaagaatcttccctcttcccagaggggcaatgactggaaacgagcaagtaggtggggtctttaaagggccacagtactaggctctatccagacagctgttcagactgccccaaaagccttctgagaagttgttgctagggcataacaggaCAATTAGATTAagagtaggagtgatagcttcttcaacactttggagcaggaaggaatggaagcaagatacagttggaagagggtgtagtgggtgacttgatgaatcgagttcatagtattatttttgacttgggttctcctttgttggcatgcttctgagttggcatcattgcctctgccctgatccttcccttggatggggctgttcaccagtgcagcggccagcgagctctttgggcggggtgtgtggcatacacagtgcgatgtctggaatcttacacgtgcttacttgaggcat---tcttactccaccggtcgagtgttctcagagaaagatgatggagctgctaaaccttgcccattttgatctgttatgtgagacatgcctttcgccttctgtcatgattgtgaagtgtccccagccatgtggaactgtgggtccattaatcttttttccatttaaattaccctctctcaggtatgtttttgtcagcagttttaaaacggactaatTTTagacgcttggccctagttctttgtaggcctttcaatattaaaaatgtccaatattgaatattaaaagtattcagtatttctattaagctcttgagtcattggggt---------tccaatcagggttgtcaatatgtactgcctctcttcc-tttggtaatggagtttcccttgtttcttttctttccttattttgtcttgtatttttatttatttatttatttttatgtatttttttgtcacactgtaggacacatattgcttgtctctgaacttctcagctgcctgcagatcttcctgtttttcagctgcagttaggatttgtctgaggagaagcataacatccctccatgtgaggttcgacacctgagttaaattttggaaagcttctttatacctatcagggtcgttcaaaaaccagcctaattctctttatctgcctgtggttctgcaatgagaagggaactggaaccttagtgacattgtctccattaggcatttcctgcagtggtaagtgtcagtctgtggaatgaggagtgatgacactggaggggctgacattgcatttggaagggaccctgaataagggagactaagaggggcctgaacactcaataactgccttagatgtttttcccagaatttgtttcgctagtgttggggagttatttcctttgggcctgcctgatatgactgttaaaagagctctgttgattgtgcaatgcttacaaaggtctagtaacctttggttctccactggtga------ttg-ttttttttgactttgcaaacctgtgtgacctgtatggttcctcaatagatggatcttggaaagtagtatgtaatagttgtatttgggcaaggcccctttaatggagacagtgtactgagttgagctctatattttgctattatggcctcgagtcatgtatttattcttaggcagtgattctggttaactttcagacataaaatgttactatttaagtaa-aggttaattggaggcagaataggtgccttaaaataatgtaaggaatgaaaggtggttttcctgctcatgggacagtactggggctaaaacttcattttggaggacattttcctcctcattgttgagttttcccattcacagaagcagcataaagcctggtctctagtagagagtgcaaaa-----gagaattcagaaactagaatgtttcagcaaagggctgacaaggtgtctcatggagaggagtctaattgcactaggtggtgctgttgaccttgaaataccgtgtgctctacagaccaagggct----------------------------------gagagagagtcgttcactgggtgggatgggtgagaccctctgtttctagaaaatcacagaaatggcactcccttgatctatattcccagttaccagaacatttccaaatcttgcctaacaggat------------ctttaaaaattgctgcagcattgcacacacagagtagataagagacatggttgtcttagacaggaaaggaggaaaattgcaataggaaaggctccaagatcctgttgctgatgcccatcgggcagtc--ggagggtggagttagtccagaagcctttgggtaacagtggggtgtggtcctgggaaggaagcattagttgcctctggacctcttccagacccacatgacacctaggctgtctgtgaaagaaaactggttcaaaacagagtcaacattcccagcactttgagggccctgggggattcactaagttttctctgttgtcttagtattgagaatggttgccaccctaaagg--ttttttaaatttgctatcagttgcccagtttttagtttataattttaaagttgagggcagaaagcctcaaaatcaaagtaaaggtttagggttcactcctctactcacctttccgatgaatctatcttggatccCCAACCAGCCCTCACAAtgaaatggcattattgtctgcggtaaatatctgagattcgttgtctcacagacctggaaaactaggccaca-acactcagagtgaggctcagagcagaagtttaataggtgaaagaaagagaaaagttctcttgctacagagaagggtcccagagaaatgggttgctggtttggcagtgaagtgcaaggggctttatagatgagcttgaagtggg--ggtgtctgatttacgtaagacacaaaagattggttcgaccaggtgtgccatttgcatagggcatgaaaagctggctgctcccaccataaccttttattatgcagacggcttttctgcctggccagtgtcatattgccctttt---------------ttctttttttttcttttttactgtaaacatagtaacaataaaagggaagatggagcctctgtgttggacatgcctggctcccagttagcccttttctattggcgcagctactagcatCCTAAATCATTTATTTCTACCTCCTGTATCAGTGgcagcagatctgtatgggtctgcagcaacctcaattcttgtcttctaagaagaaagaatttgactgaagggagtaagccagagggagagaccaaggaaagttttaaaacaggagtgaaagtttattaaacagcatcagaataagagccaaaggtaataaagtacatctggaagtgggccaagcgggtgacctgagagatcaagcgcatgatttgatttttgacttggggtcttataggttagcaggcttctggtattgtgtttcttctcactgatgcttcccttggggcaggttgtccacatgcagagtggtccctcagcacttggtaggggctgaatgtgcagtatggttactggagttgtatgcatgctcacttgatgtgttcctcctgacccagtcaaatgttgccagagaaaggtactagag
i nomLeu3.chr16            M 100 C 0
s rheMac3.chr8             61647109 3772 + 150158102 GTGTTTGG----------------CAGACATGAACATACGACAGAAGGGCCATCCAGGAAGACTGCACACTGGGCAGAAGGAAGACTTAAGAACATTGCATGGACAGCAGAAGGAGTGCTTCAGGAGATTGCCTGGTGGGCGGCAGGAACACCTGAGAGGACATCATGGCGGACAGTGGAAATgagaggtttacatttactgccttgtttacataaggtggtaaactctggagcacttgtggttaagggtgaaaattcgccctgggtgaaggaagaatcttccctcttcccagaggggcaatgactggaaatgagcaagtaggtgcagtctttaaagggccacagtactaggctctatccagagagctgttcagactgccccaaaaggcttctgagaagttgttgctagggcgtaacaggaCAGTTAGATTAagagtaggaatgatagcttcttcagcactttggagcaggaaggaatggaagcaagatacagttggaagagggtatagtgagtgacttgacagatcgagtgcatggtattatttttgacttgggttctccttcgttggcatgcttctgggttggcatcatcgcctctcccctgatccttccctgggatagggctgtt---cagtgcagcagccagcgagctccttgggcggggtgtgtggcgtacacagtgcgatgtctagaatcttacacgtacttacttgaggcat---tcttccttcaccagtcgagtgttctcagagaaagatgatggagctgctaaaccttgcccattttgATccgttatatgagacatgccttttgccttctctcatgattgtgacgtgtccccagccatgtggaactgtgagtccattaatcttttttccatttaaattgctctctctccagtatgtttttgtcagcaattttaaaacagactaatTTTAGACGCTTGGCCCTAGTTCTCTGTAGGCCTTTCAATATCAAAAATGTCCGATATTGAATATTAAAAGTATCCAGTAtttctattaaactgttgagtcattgggatgtcaagatgtccagccagggttgtcaagatgtactgcctctcttcc-tttggtaatggagtttcctttgtttcttttctttccctattttgtcttgtatttttatttatttatttattttta-----ttttttgtcacactgtaggacacatattgcttgtctctgaacttctcagctgcctgcacatcttcctgtttttcagctgcagttagggtttgtctgaggagcagcataacatccctccatgcgaggtccaacacctgagttaaattttggaaagcttctttatacctatcagggtcattcgaaaaccagccgaattctccttatctgcctgtggttctgcaatgagaagggaactggaaccttggtgacatcatctccattaggtatttcctgcagtggtaagtgtcagaccatggaatgaggagtgatgacactggaggggctgacattgcatttggaaggtgccgtgaataagggggaccatgaggagcctgaacact----aactgccttcagtgtttttcccagaacttgttttgccactgttggggagttatttcctttgggcctgcctgatatgactattaaaagagctgtgttgattgtgcagtgcttacaagggtctagtaacctttggttctccattggtga------ttgttttcttttgactttgtaaacctgtgtgacctgtgtggctcctcagtagatagatcttggaaaatagtatgtaatagttgtatttgggcaaggcccctttaatggagacagtgtactgagttgaattctttattttgctattatggccttgactaatgtatttattcttaggcagtgattctggttaactttcagacataaaatgttactatttgagtaacatgttaattggaggcagaataggtgccttaaaataatgtaaggaatgaaaggtggttttcctgctcatgggacagtattggggctaagacttcattttggaggacattttcctcctcattgttgagttttcccattcacagaagcagcataaaggctggtctctagtagagggtgcaaaagtgagaagaattcagaaactagaatgtttcagcaaagaactgacaaggtgtctcatggagaggattctaattgcattaggtggtgctgttgaccttgaaataccatgtgctctacagaccaagggc------------------------------ggagagagagagagaggttcactgggtggggtgggtgagaccctctgtttctagaaaatcacaaaaacggcactcccttgatccatattcccagttaccagagcgtttccaaatcttgcctaacaggattatttccctgagctttgaaaatttctgcagcattg--cacacacagtggagaagggacatggttgtcttggacaggaaaggaggaaaattacagtaggcaagactccaagatcctgttgctggtgcccatcaggcagtcagggagggtggagttagttcagaagcctttgggtaacagtgggttgttgtcccggaaagcaagcattag-----tctgtacgtcttccagacccacatgacatctaggctgtctg---------------tcaaaacagagtcaaccttcccagcactttgagggccctgggggattcactaagttttctctgttgtcttagtattgagaatggtggccaccctaaagatttttttttaatttgctatcagttgcccagtttttagtttataattttaaagttgagagcagaaggcctcaaaatgaaagtaagggtttagggtccactcgtttactcacctttctgatgaatctaccttggatccccaaccagcccccacaatgaaatggcgttattgtctgcggtaaatatctgaaattcgttgtctcagagacctggaaaactaggccacagacactgagagtgaggctcggagcagaagtttaataggtgaaagaaagagaaaagctctcttgctacagagaagggtcccagagaaataggtcgctggttctgcagtgaagtgcaagggtctttatagatgagcttgaagtggg--ggtgtctgatttacataagacacaaaagattggttggaccaggtataccatttgcatagggcatgaaaagctggatgtccccaccataaccttttattatgcaaatggcttttctacctggccggtgttgaattgcccttttttctttttctg--ttttttttttttttttttttcactgtaaacatagtaacaataaaagggaacatggagcctctgtgttggacatgcctggcccccaagtagctcttttctattggcgcagctactagcGTCCTAAATCATTTATTTCTACCTCCTGTATCAGTGgcagcagatctgtatgggtctgcagcaacctcaattcttgtcttctaagaagaaagaatttggctgacaagagtaagccagagggagagacctaggaaagttttaaaacaggagtgaaagtttattaaagagcatcagaataagagccaaaggtaataaagtacccctggaagtgggccaagtgggtgacctgagagatcaagtgcatggtttgatttttgacttggggtctcataggttagcaagcttctgggattg-gtttcttctcgctgatgcttcccttggggcaggttgtccacatgcagagtggtccgtcagcacttggtaagggctgaatgtgcagtgtggttactggagctgtatgcatgctcacttgatgtgttcctcctgaaccagtcaaatcttgctagagagaggtACTAGAG
i rheMac3.chr8             C 0 I 41461
s macFas5.chr8             58320144 3767 + 146850525 GTGTTTGG----------------CAGACATGAACATACAACAGAAGGGCCATCCAGGAAGACTGCACACTGGGCAGAAGGAAGACTTAAGAACATTGCATGGACAGCAGAAGGAGTGCTTCAGGAGATTGCCTGGTGGGCGGCAGGAACACCTGAGAGGACATCATGGCGGACAGTGGAAATgagaggtttacatttaatgccttgtttacataaggtggtaaactctggagcacttgtggttaagggtgaaaattcgccctgggtgaaggaagaatcttccctcttcccagaggggcaatgactggaaatgagcaagtaggtgcagtctttaaagggccacagtactaggctctatccagagagctgttcagactgccccaaaaggcttctgagaagttgttgctagggcgtaacaggaCAGTTagattaagagtaggaatgatagcttcttcagcactttggagcaggaaggaatggaagcaagatacagttggaagagggtatagtgagtgacttgacagatcgagtgcatggtattatttttgacttgggttctccttcgttggcatgcttctgggttggcgtcatcgcctctcccctgatccttccctgggatagggctgtt---cagtgcagcagccagcgagctccttgggcggggtgtgtggcgtacacagtgcgatgtctagaatcttacacgtacttacttgaggcat---tcttccttcaccagtcgagtgttctcagagaaagatgatggagctgctaaaccttgcccattttgATccgttatgtgagacatgccttttgccttctctcatgattgtgaagtgtccccagccatgtggaactgtgagtccattaatcttttttccatttaaattgctctctctccagtatgtttttgtcagcaattttaaaacagaccaattttagacgcttggccctagttctctgtaggcctttcaatatcaaaaatgtccgatattgaatattaaaagtatccagtatttctattaaactgttgagtcattgggat---------tccagccagggttgtcaagatgtactgcctctcttcc-tttggtaatggagtttcctttgtttcttttctttccctattttgtcttgtatttttatttatttatttattttta-----ttttttgtcacactgtaggacacatattgcttgtctctgaacttctcagctgcctgcacatcttcctgtttttcagctgcagttagggtttgtctgaggagcagcataacatccctccatgcgaggtccaacacctgagttaaattttggaaagcttctttatacctatcagggtcattcgaaaaccagccgaattctccttatctgcctgtggttctgcaatgagaagggaactggaaccttggtgacatcatctccattaggtatttcctgcagtggtaagtgtcagaccatggaatgaggagtgatgacactggaggggctgacattgcatttggaaggtgccgtgaataagggggaccatgaggagcctgaacact----aactgccttcagtgtttttcccagaacttgttttgccactgttggggagttatttcctttgggcctgcctgatatgactattaaaagagctgtgttgattgtgcagtgcttacaagggtctagtaacctttggttctccattggtga------ttgttttcttttgactttgtaaacctgtgtgacctgtgtggctcctcaatagatagatcttggaaaatagtatgtaatagttgtatttgggcaaggcccctttaatggagacagtgtactgagttgaattctttattttgctattatggccttgactaatgtatttattcttaggcagtgattctggttaactttcagacataaaatgttactatttgagtaacatgttaattggaggcagaatgggtgccttaaaataatgtaaggaatgaaaggtggttttcctgctcatgggacagtattggggctaagacttcattttggaggacattttcctcctcattgttgagttttcccattcacagaagaagcataaaggctggtctctagtagagggtgcaaaagtgagaagaattcagaaactagcatgtttcagcaaagaactgacaaggtgtctcatggagaggattctaattgcattaggtggtgctgttgaccttgaaataccatgtgctctacagaccaagggc------------------------------ggagagagagagagaggttcactgggtggggtgggtgagaccctctgtttctagaaaatcacaaaaacggcactcccttgatccatattcccagttaccagagcgtttccaaatcttgcctaacaggattatttccctgagctttgaaaatttctgcagcattgcacacacacagtggagaagagacatggttgtcttggacaggaaaggaggaaaattacagtaggaaagactccaagatcctgttgctggtgcccatcaggcagtcggggagggtggagttagttcagaagcctttgggtaacagtgggttgttgtcccggaaagcaagcattag-----tctgtacgtcttccagacccacatgacatctaggctgtctg---------------tcaaaacagagtcaaccttcccagcactttgagggccctgggggattcactaagttttctctgttgtcttagtattgagaatggtggccaccctaaagatttttttttaatttgctatcagttgcccagtttttagtttataattttaaagttgagggcagaaggcctcaaaatgaaagtaagggtttagggtccactcgtttactcacctttctgatgaatctaccttggatccccaaccagcccccacaatgaaatggcgttattgtctgcggtaaatatctgaaattcgttgtctcagagacctggaaaactaggccacagacactgagagtgaggctcggagcagaagtttaataggtgaaagaaagagaaaagctctcttgctacagagaagggtcccagagaaataggtcgctggttctgcagtgaagtgcaagggtctttatagatgagcttgaagtggg--ggtgtctgatttacataagacacaaaagattggttggaccaggtataccatttgcatagggcatgaaaagctggatgtccccaccataaccttttattatgcaaatggcttttctacctggccggtgttgaattgcccttttttctttttctgttttttttttttttttttttttcactgtaaacatagtaacaataaaagggaagatggagcctctgtgttggacatgcctggcccccaagtagctcttttctattggcgcagctactagcatCCTAAATCATTTATTTCTACCTCCTGTATCAGTGgcagcagatctgtatgggtctgcagcaacctcaattcttgtcttctaagaagaaagaatttggctgacaagagtaagccagagggagagacctaggaaagttttaaaacaggagtgaaagtttattaaacagcatcagaataagagccaaaggtaataaagtacccctggaagtgggccaagtgggtgacctgagagatcaagtgcatggtttgatttttgacttggggtctcataggttagcaagcttctgggattg-gtttcttctcgctgatgcttcccttggggcaggttgtccacatgcagagtggtccgtcagcacttggtaagggctgaatgtgcagtgtggttactggagctgtatgcatgctcacttgatgtgttcctcctgaaccagtcaaatcttgctagagagaggtACTAGAG
i macFas5.chr8             C 0 I 42259
s chlSab2.chr8             53246092 3781 + 139301422 GTGTTTGG----------------CAGACATGAACATACGACAGAAGGGCCATCCAGGAAGACTGCACACTGGGCAGAAGGAAGACTTAAGAACATTGCATGGACAGCAGAAGGAGTGCTTCAGGAGATTGCCTGGTGGGCGGCAGGAACACCTGAGAGGACATCATGGCGGACAGTGGAAATgagaggtttacatttaatgccttgtttacataaggtggtaaactctggagcacttctggttaagggtggaaattcgccctgggtgaaggaagaatcttccctcttcccagaggggcaatgactggaaacgagcaagtaggtgcagtctttaaagggccacagtactaggctctatccagagagctgttcagactgctccaaaaggcttctgagaagttgttgctagggcgtaacaggaCAGTTAGATTAagagtaggaatgatagcttcttcagcactttggagcaggaaggaatggaagcaagatacagttggaagagggtatagtgagtgacttgacagatcgagtgcatggtattatttttgactt-ggttctccttcgttggcatgcttctgggttggcgtcgtcgcctctcccctgatccttccctgggatagggctgtt---cagtgcagcagccagcgagctccttgggcggggtgtgtggcgtacacagtgtgatgtctagaatcttacatgtacttacttgaggcatgtacttaccttcaccagtcgagtgttctcagagaaagatgatggagctgctaaaccttgcccattttgATccgttatgtgagacatgccttttgccttctctcatgattgtgaagtgtccccagcc-tgtggagctgtgagtccgttaatcttttttccatttaaattgctctctctccagtatgtttttgtcagcaattttaaaacggactaatTTTagacgcttggccctagttctctgtaggcctttcaatatcaaaaatgtctgatattgaatattaaaagtatccagtatttctattaaactgttgagtcattggagt---------tccaaccagggttgtcaagatgtactgcctctcttcc-tttggtaatggagtttcccttgtttcttttctttccctattttgtcttgtatttttatttatttatttatttttat----ttttttgtcacactgtaggacacatattgcttgtctctgaacttctcagctgcctgcacatcttcctgtttttcatctgcagttagggtttgtctgaggagcagcataacatccctccatgcgaggtccaacacctgagttaaattttggaaagcttctttatacctatcagggtcattcgaaaaccagccgaattctccttatctgcctgtggttctgcaatgagaagggaactggaaccttggtgacatcatctccattaggtatttcctacagtggtaagtgtcagaccgtggaatgaggagtgatgacgctggaggggctgacattacatttggaaggggccgtgaataagggggaccatgaggagcctgaacact----aactgccttcagtgtttttcccagaacttgttttgctgctgttggggagttaattcctttgggcctgcctgatatgactattaaaagagctatgttgattgtgcaatgcttacaagggtctagTAACCTTTGGTTCTCCATTGGTGATTTTTTTTTtttttttttgactttgtaaacctgtgtgacctgtgtggctcctcaatagatagatcttggaaaatagtatgtaatagttgtatttgggcaaggcccctttaatggagacagtgtactgagttgaactctttattttgctattatggccttgactaatgtatttatttttaggcagtgattctggttaactttcagacataaaatgttactatttaagtaacacgttaattggaggcagaataggtgccttaaaataatgtaaggaatgaaaggtggttttcctgctcatggtacagtactggggctaaaacttcattttggaggacattttcctcctcattgttgagttttcctattcacagaagaagcataaaggctggtctctagtagagggtgcaaaagtgagaagaattcagaaactagaatgtttcagcaaagaactgacaaggtgtctcatggagaggattctaattgcattaggtggtgctgttgaccttgaaataccatgtgctctacagaccaagggca------------------------gagagagagagagagagagaggttcactgggtggggtgggtgagaccctctgtttctagaaaatcacaaaaacggcactcccttgatctatattcccagttaccagagcgtttccaaatcttgcctaacaggattatttccctgagctttgaaaatttctgcagcattgcacacacacagtggagaagagacatggttgtcttggacaggaaaggaggaagattacagtaggaaagactccaagatcctgttgctggtgcccatcaggcagtcggggagggtggagttagtccagaagcctttgggtaacagtggggtgttgtcctggtaaggaagcattagttgcctctggacctcttccagacccacatgacatctagactctctg---------------tcaaaacagagtcaacctccccagcactttgagggccctgggggattcactaagttttctctgttgtcttagtattgagaatggtggccaccctaaaga-ttttttttaatttgctatcagttgcccagtttttagtttataattttaaagttgagggcagaaggcctcaaaatgaaagtaaaggtttagggtccactcctttactcacctttctgatgaatctaccttggatccCCAACCAGCCCCGACAAtgaaatggcgttattgtctgtggtaaatatctgagattcgttgtctcacagacctggaaaactaggccacagacattcagagtgaggctcggagcagaagtttaataggtgaaagaaagagaaaagctctcttgctacagagaagggtcccagagaaataggtcgctggttctgcagtgaagtgcaagggtctttatagatgaacttgaagtggg--ggtgtctgatttacataagacacaaaagattggttggaccaggtataccatttgcatagggcatgaaaagctggatgtccccaccataaccttttattatgcaaatgacttttctacctgactggtgttgaattgcccatttttctttttctg----tttttttttttttttttccactgtaaacatagtaacaataaaagggaagatggagcctctgtgatggacatacctggcccccaagtagctcttttctattggcgcagctactagcGTCCTAAATCATTTATTTCTACCTCCTGTATCAGTGgcagcagatctgtatgggtctgcagcaacctcaattcttgtcttctaagaagaaagaatttgactgacaagagtaagccagagggagagacctaggaaagttttaaaacaggagtgaaagtttattaaacagcatcagaataagagccaaaggtaataaagtacccctggaagtgggccaagtgggtgacctgagagatcaagtgcatggtttgatttttgacttgggatctcctaggttagcaagcttctgggattg-gtttcttcttgctgatgcttcctttggggcaggttgtccacatgcagagtggtccgtcagcacttggtaagggctgaatgtgcagtgtggttactggagctgtatgcatgctcacttgatgtgttcctcctgaaccagactaatattgctagagaaaggtACTAGAG
i chlSab2.chr8             C 0 I 36839
e ornAna1.Ultra479          3871811  995 -   6008416 T
e tetNig2.chr13             4300044  851 -  13302670 T
e punNye1.JH419232          4767720  338 +   5065651 T
e mayZeb1.JH720588          2493684  338 +   2778784 T
e hapBur1.JH425411          1657068  338 +   1983257 T
e neoBri1.JH422276          4185134  338 -  16571924 T
e araMac1.KE026486             3582  666 -     24340 T
e astMex1.KB882082          3904961  703 -   8876373 T
e takFla1.KE120500           511214  428 +    663757 T
e fr3.chr9                  3741472  428 -  13922460 T
e ficAlb2.chr1A            24321356  629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221293          1179931    0 -   1495300 I
e zonAlb1.KB913045         12582078  625 +  16390125 T
e colLiv1.KB375358          1019695  647 +   1462937 T
e allMis1.JH737798            79979  829 +    106177 T
e falPer1.KB391107          2216113  646 -   3101084 T
e falChe1.KB398074          4263496  646 -   7151304 T
e macEug2.GL108065            83888  651 -    187545 T
e galGal4.chr1             24067632  655 + 195276750 T
e geoFor1.JH739914          5157808  631 -   7168866 T
e melGal1.chr1             24929366  674 + 204065131 T
e anaPla1.KB743807             6030  614 +     81650 T
e amaVit1.KB277496             7479  640 -     10329 T
e apaSpi1.KB929668          5961518  314 -  12308914 T
e cheMyd1.KB478633          2433661  653 +   6037886 T
e chrPic2.chr2             18523590  672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730    0 - 304825324 I
e taeGut2.chr1A            23692651  539 +  73657157 T
e panTro4.chr8             54977249 47550 + 143986469 I

a score=82572.000000
s hg38.chr8_KI270814v1_alt    63650 319 +    141812 ctcttaaactacacccactaccatgcgtgagcccactagccgaactcctttgagcttatcaggaagctgctgaacactatctggtgtttctgtctgtggcaggaaccatttttccctggcaccagctggcactggctgcgaacagtaaatatttcagagatgcagtttacaaccacctgaccatcacctcctgatcaccttacatttttggtt-gggggcccccccctcgtgccctgtttatgtttgactaacCGGAACATATGACAGGATGAAATGTTTGGCAGAAGAAacattgtattggacacttaatagcctattg
s ponAbe2.chr8             59033492 320 + 153482349 ctcttaaactacacccactaccatgcgtgagcccactagctgaactcctttgagcttatcaagaagctgctgaacactatctggtgtttctgtctgtggcagggaccatttttccctggcaccagctggcactggctgtaaacagtaaatatttcagagatgcagtttacaaccacctgaccatcacctcctgatcaccttacattttttgttgggggggccccccctcgtgccctgtttatgtttgactaacCGGAACATATGACAGGATGAAATGTTTGGCAGAAGAAACATCGTATTGGACACTTAATAGCCTGTTC
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16            48106924 316 + 100215132 ctcttaaactacaccgactaccatgcgtgagcccaccagctgaactcctttgagcttatcaggaagctgatgaacactatctggtgtttctgtctgtggcagggaccattttaccctggcaccagctggcactggctgcaaacagtaaatatttcagagatgcagtttacaatcacctgatcatcacctcctgatcaccttaca-ttttggttgggggg---ccccctcgtgccctgtttatgtttgactaacCGGAACATATGACAGGATGAAACGTTTGGCAGAAGAAacattgtattggacacttaatagcctattg
i nomLeu3.chr16            C 0 C 0
e ornAna1.Ultra479          3871811 995 -   6008416 T
e tetNig2.chr13             4300044 851 -  13302670 T
e punNye1.JH419232          4767720 338 +   5065651 T
e mayZeb1.JH720588          2493684 338 +   2778784 T
e hapBur1.JH425411          1657068 338 +   1983257 T
e neoBri1.JH422276          4185134 338 -  16571924 T
e araMac1.KE026486             3582 666 -     24340 T
e astMex1.KB882082          3904961 703 -   8876373 T
e takFla1.KE120500           511214 428 +    663757 T
e fr3.chr9                  3741472 428 -  13922460 T
e ficAlb2.chr1A            24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195      44418 8752 +     59083 T
e pseHum1.KB221293          1179931   0 -   1495300 I
e zonAlb1.KB913045         12582078 625 +  16390125 T
e colLiv1.KB375358          1019695 647 +   1462937 T
e allMis1.JH737798            79979 829 +    106177 T
e falPer1.KB391107          2216113 646 -   3101084 T
e falChe1.KB398074          4263496 646 -   7151304 T
e macEug2.GL108065            83888 651 -    187545 T
e galGal4.chr1             24067632 655 + 195276750 T
e geoFor1.JH739914          5157808 631 -   7168866 T
e melGal1.chr1             24929366 674 + 204065131 T
e anaPla1.KB743807             6030 614 +     81650 T
e amaVit1.KB277496             7479 640 -     10329 T
e apaSpi1.KB929668          5961518 314 -  12308914 T
e cheMyd1.KB478633          2433661 653 +   6037886 T
e chrPic2.chr2             18523590 672 -  68452538 T
e pelSin1.JH208680          8419308 1978 -  16024077 T
e melUnd1.JH556589          7668572 10921 -   7952740 I
e monDom5.chr5              9605730   0 - 304825324 I
e taeGut2.chr1A            23692651 539 +  73657157 T
e rheMac3.chr8             61650881 41461 + 150158102 I
e macFas5.chr8             58323911 42259 + 146850525 I
e chlSab2.chr8             53249873 36839 + 139301422 I
e panTro4.chr8             54977249 47550 + 143986469 I

a score=88987.000000
s hg38.chr8_KI270814v1_alt     63969 143 +    141812 tcctaatagactacatacagcatagtgtaaacatcacctt-----tatgcactggaaaaccaacaaatttgtgtgactcactctattgtgatgtttgctttgcgtcattggtctggaacttagcttgaaatattttcagtgtatgcct
s ponAbe2.chr8              59033812 143 + 153482349 Tcttaatagactacatacagcatagtgtaaacatcacctt-----taagcactggaaaaccaacaaatttgtgtgactcactgtattgtgatgtttgctttgcgtcattggtctggaagttagcttgaaatattttcagtgtatgcct
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48107240 143 + 100215132 tcctaatagactacatacagcgtagtgtaaacatcacctt-----tatgcactgaaaaaccaacaaatttgtgtgactcactgtattgtgatgtttgctttgcgtcattggtctggaacttagcttgaaatattttcagtgtatgcct
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190746646 143 - 190850796 tcttaatagac----tacaatttagtgtaaacatgactttcatcatgttttttgcaaaaccaaaaaa-ttgtgtgactctctttattgcaatgtttgctttatttgagtagtctggaactgaacttgcaatatttccaaggtatgccC
i calJac3.chr3             N 0 C 0
s saiBol1.JH378165          14111008 144 -  14256875 tcttaacagac----tagaatatagcgtaaacatgactttcatcatgttttttgcaaaaccaaaaaatttatgtgactcactttattgcaatgtttgctttatttgagtagtctggaactgaacttgtaatatttccaaggtatgtcC
i saiBol1.JH378165         N 0 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221293           1179931   0 -   1495300 I
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5               9605730   0 - 304825324 I
e taeGut2.chr1A             23692651 539 +  73657157 T
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=-347.000000
s hg38.chr8_KI270814v1_alt     64112 1 +    141812 T
s ponAbe2.chr8              59033955 1 + 153482349 T
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48107383 1 + 100215132 T
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190746789 1 - 190850796 A
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14111152 1 -  14256875 A
i saiBol1.JH378165         C 0 C 0
s capHir1.chr27             17921644 1 +  44118849 T
i capHir1.chr27            N 0 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221293           1179931 0 -   1495300 I
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5               9605730 0 - 304825324 I
e taeGut2.chr1A             23692651 539 +  73657157 T
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=6247.000000
s hg38.chr8_KI270814v1_alt     64113 2 +    141812 TA
s ponAbe2.chr8              59033956 2 + 153482349 TA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48107384 2 + 100215132 TA
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190746790 2 - 190850796 CA
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14111153 2 -  14256875 CA
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3010205 2 -  10937097 ta
i orcOrc1.KB316932         N 0 C 0
s panHod1.KE114653           1493970 2 -   2937107 TA
i panHod1.KE114653         N 0 C 0
s bosTau8.chr27             18209894 2 +  45407902 TA
i bosTau8.chr27            N 0 C 0
s oviAri3.chr26             17836126 2 +  44077779 TA
i oviAri3.chr26            N 0 C 0
s capHir1.chr27             17921645 2 +  44118849 TA
i capHir1.chr27            C 0 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221293           1179931 0 -   1495300 I
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5               9605730 0 - 304825324 I
e taeGut2.chr1A             23692651 539 +  73657157 T
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=573969.000000
s hg38.chr8_KI270814v1_alt     64115 194 +    141812 AATGGGACTGAGATACAGTAAGTGA--GTCATTAGTGATCAAGAAACCAAAAAAATTAAGGATAATAGAGTAG-CTTAAATTTGAGAGAAAATGTTCAGAAAGAATTTGAGGTGCTTATTATGTGTTTGTTTGTTTTCTTTTTTTAACAAATGAATATTCAGCATCTCATCC-ACTGAAACAACCTTTAATATGATTT
s ponAbe2.chr8              59033958 190 + 153482349 AATGGGACCAAGATACAGTAAGTGA--GTCATTAGTGATCAAGAAACCGAAAAAATTAAGGATAATAGAGTAG-CTTAAATTTGAGAGAAAATGTTCAGAAAGAATTTGAGGCCCTTATTATG----TGTTTGTTTTCTTTTTTTAACAAATGAATATTCAGCATCTCATCC-ACCGAAACAACCTTTAATATGATTT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48107386 188 + 100215132 AATGGGACCGAGATACGGTAAGTGA--GTCATTAGTGATCAAGAAACCAAAAAAATTAAGGATAATAGAGTAG-CTTAAATTTGAGAGAAAAT-TTTAGAAAGAATTTGAGGCCCTTATTATG----TGTTTG-TTTCGTTTTTTAACAAATGAATATTCAGCATCTCATCC-ACTGAAACAACCTTTAATATGATTT
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190746792 113 - 190850796 AACGAGACAGAGATAC----AGTGA--GTCAATAATGGTGAAGAAACCAAGAAATATGGTGATAGTAAACTAGCCTTAAGATTGAG---GAACTTTCAAGAAGAATTTGGGCCCATTATTGT----------------------------------------------------------------------------
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14111155 114 -  14256875 AACGGGACAGAGATAC----AGTGA--GTCATTAATGGTCAAGAAACCAAGATATCTGGTGATAGTAAACTGGCCTTAAGATTGAG---GAACTGTCAAGAAGAATGTGGGCCCGTTATTGTC---------------------------------------------------------------------------
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3010207 188 -  10937097 aatgggacagagacac----agtaagtgtcattaagagtcaagacacagagagacttgggggtatgaagctagcccaaatattgagggaaaactttctgaaagGATTTGGGCTCCCTATCATT----TGTTTGGGTTTTTTTCCC-ACAAATAAATATTCAGCACCTAGCCT-ACTGAAACAACCTTTAAAATAGTTT
i orcOrc1.KB316932         C 0 I 1
s panHod1.KE114653           1493972 186 -   2937107 GATGGAACAGAGACAC----AGTGA--GTCATTAGAAGTAAAGAAGCTGCGAGACTTGGGAGTACTAAACTAGCCCAAAGATTGAGGGAAAATATTCAGAAAAGATTTGAGCTCTTTGTCGTT----TGCTTGTTTGTCTTTTCT-ACAAATAAATATTCAGCACCTAGCTG-CTTGAGACAACCTTTAAAATGGTTT
i panHod1.KE114653         C 0 I 1
s bosTau8.chr27             18209896 186 +  45407902 AATGGAACAGAGGCAC----AGTGA--GTCATTAGAAGTAAAGAAGCTGCGAGACTTGGGAGTACTAAACTAGCCCAAAGATTGA-GAAATATATTCAGAAAAGATTTGAGCTCTTTATCGTT----TGCTTGTTTGTCTTTTCT-ACAAATAAATATTCAGCACCTAGCCGATTTGAGACAATCTTTAAGATAGTTC
i bosTau8.chr27            C 0 I 1
s oviAri3.chr26             17836128 186 +  44077779 GATGGGACAGAGACAC----AGTGA--GTCATTAGGAGTAAAGAAGCTGCGAGACTTGGGAGTACTAAACTAGCCCAAAGATTGAGGGAAAATATTCAGAAAAGATTTGAGCTCTTTGTCGTT----TGCTTGTTCGTCTTTTCT-ACAAATAAATATTCAGCACTTAGCTG-CTTGAGACAACCTTTAAAATGGTGT
i oviAri3.chr26            C 0 I 1
s capHir1.chr27             17921647 186 +  44118849 GATGGAACAGAGACAC----AGTGA--GTCATTAGGAGTAAAGAAGCTGTGAGACTTGGGAGTACTAAACTAGCCCAAAGATTGAGGGAAAATATTCAGAAAAGATTTGAGCTCTTTGTCGTT----TGCTTGTTTGTCTTTTCT-ACAAATAAATATTCAGCACCTAGCTG-CTTGAGACAACCTTTAAAATGGTTT
i capHir1.chr27            C 0 I 1
s equCab2.chr27             18738068 185 -  39960074 aatgggacagaaacac----agtga--gtcactaagagtcaagaaaccaagagacttggggTTA-CAAGCTAGCCCAAAGATTGAGGGAAAGCTTTCAGAAAGGATTTAGGCTCCCTATTGTT----TGTTTGTTTTTCTTTTTT-AGAAATGAATCTTCAGCACCTAGCCT-ACTGAAACAACCTTTAAAATAACTT
i equCab2.chr27            N 0 M 1479
s felCat8.chrB1             20466202 187 + 206538554 AATGGGCCAGAGACAC----AGTGA--GTCATGAAGAGTCCAGAAACGAAGAGATGTGGGGGTATTAAGCTAGTCCAAAGATTGAGGGAAAACTTGCAGAAATGATTTGGGCCCCCTATTATT----TGTTTGTTTCTCTTCTTTCAGAAATGAATATTCAGCACCCAGCCC-ACTAAAACAACCTTTAAAATAACTT
i felCat8.chrB1            N 0 I 501
s canFam3.chr16             18184490 181 -  59632846 AATGGGACAGAAACAC----AGTGA--ATCATGAAGAGTCAAGAAACCAAGAAATTTGGGGGTATTAAGCTAGCCCAAAGATTGAGGGAAAACTTGCAGAAATTATTTGGG-CCCCTATTGTT----TCTTTGTTTCTCTTTTTCCACAAA-AAATATGCAG-ACCTAGCCC-ACTAAAATAAGCTTTAAAATAA---
i canFam3.chr16            N 0 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221293           1179931   0 -   1495300 I
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5               9605730   0 - 304825324 I
e taeGut2.chr1A             23692651 539 +  73657157 T
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=606131.000000
s hg38.chr8_KI270814v1_alt     64309 195 +    141812 ACTGTATCTCTTGA--ATactcattcatgcatgcaatacta-acctgcatgcctactatctgctaagcagtatttgaagagctagagatacagcaaggaacaaaata-aagcctctcctcttatagatcttacatagtggggagagtgggagcaaccagtgaacaaactggaaaatgtgtatataaaatagatgaggtg
s ponAbe2.chr8              59034148 195 + 153482349 ACTGTATCTCTTGA--ATactcattcatgcatgcaatacta-acctgcatgcctactatgtgctaagcagtatttgaagaactagagatacagcaaggaacaaaata-aagcctctccccttacagatcttacatagtggggagagtgggagcaaccagtgaacaaactggaaaatgtgtatataaaatagatgaggtg
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48107574 195 + 100215132 ACTGTATCTCTTGA--ATactcattcatgcatgcaatacta-acctgcatgcctaccgtctgctaagcagtattggaagaactagagatacagcaaggaacaaaata-aagcctctcctcttatagatcttacatagtggggagagtgggagcaaccagtgaacaaactggaaaacgtgtatataaaatagatgaggtg
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190746905 170 - 190850796 -------------------Ctcattcacgcatgcaatactc-acctgcatgcc-act-taggccaagaactattttaagag--agagatgcagcaatgaataaaaca-g--tctctgctctcatggagcttgcata--ggggagagcgggagcagccagtgaagaaatccgaaagtgtgtatacaagataggtcagatg
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14111269 174 -  14256875 -------------------Ctcattcatgcttgcaatacta-acctgcatgcc-act-tacgccaagaactattttaagagacagagatgcagcaacgaacaaaaca-gtctctctgctctcatgcagcttgcata--ggggacagtgggagcagacagtgaagaaatctgaaagtgtgtatacaagatgggtcagatg
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3010396 197 -  10937097 ACTGTACCTCTTGAATACatgcattcatgcgtgcagtacttaacctgtatgcctaccatataccaagtactatttttaaaaccggagatagagcaaaaaacaaaattaaagcccctgatctcatggggtttacata--agggagagggggagcaaccagtacagaaatttttaaatgtgtatataaaatatgtcaggtt
i orcOrc1.KB316932         I 1 C 0
s panHod1.KE114653           1494159 195 -   2937107 ACTGTGCCTCTTGAACACactcattcatgtgtgcaatactt-acctgcatgcctaccatataccaagtactatttttaaaactggcaatacagcaaaaaacaaaatt-aagtccctgagctcatgaggatcacatt--agagaagggggaagctaccaggaaagacattttttttaatgtatataaaacatgtcaggtt
i panHod1.KE114653         I 1 C 0
s bosTau8.chr27             18210083 195 +  45407902 ACTGTACCTCTTGAATACactcattcatgtgtgcgatatgt-acctgcatgcctaccatataccaagtactatttttaaaactggtgatacagcaaaaaacaaaatt-aagtccctgatctcgtgaggatcacatt--agagaaggggggagctaccaggaaagacattttttaaagtgtatatgaaacatgtcaggtt
i bosTau8.chr27            I 1 C 0
s oviAri3.chr26             17836315 195 +  44077779 ACTGTGCCTCTTGAACACactcattcatgtctgcaatactt-acctgcatgcctaccatataccgagtactatttttaaaactggcgatacagcaaaacacaaaatt-aaatccctgatctcgtgaggatcacatt--agagaagggggaagctaccaggaaagacattttttaaaatgtatataaaacatgtcaggtt
i oviAri3.chr26            I 1 C 0
s capHir1.chr27             17921834 195 +  44118849 ACTGTGCCTCTTGAACACactcattcatgtgtgtaatactt-gcctgcatgcctaccatataccaagtactatttttaaaactggcgatacagcaaaaaacaaaatt-aagtccctgagctcgtgaagatcacatt--agagaagggggaagctaccaggaaagacatttttttaaatgtatataaaacatgtcaggtt
i capHir1.chr27            I 1 C 0
s felCat8.chrB1             20466890 195 + 206538554 ACTGTACCTCTGGAAAACACCTatccatgcatgcaatactt-accttcatgcttactatatgccaagtactatttttaaaactggagatatggcaataaacaaaatt-aagtccctgatctcatggagctcacata--ggggagaggtgaagcaaccagtgaggaagttttaaaatgtgcacagaaaataagccgggta
i felCat8.chrB1            I 501 I 31
s canFam3.chr16             18184671 185 -  59632846 -CTGTACTTCTGGAAAATATCTATCTGTGCATGTAATACCT-ATCTACAAgcttattatatgcaa------tttttaaaaactggagatatagcaataaacaaaatt-aagtccctgatctcatagagcttacata--ggggagagatagagcaattagt---gaagttttaaaatatgcacataaaatatgtcacgta
i canFam3.chr16            C 0 I 162
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221293           1179931   0 -   1495300 I
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5               9605730   0 - 304825324 I
e taeGut2.chr1A             23692651 539 +  73657157 T
e equCab2.chr27             18738253 1479 -  39960074 M
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=13198.000000
s hg38.chr8_KI270814v1_alt     64504 22 +    141812 ataa------aaagtgctttaaaaaa---------ta
s ponAbe2.chr8              59034343 22 + 153482349 ataa------aaagtgctttaaaaaa---------ta
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48107769 22 + 100215132 ataa------aaagtgctttaaaaaa---------ta
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190747075 30 - 190850796 gtaa------gaagtgctttaaagaggaatgaag-ta
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14111443 31 -  14256875 gtaa------gaagtgctttaaaggggaatgaagtta
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3010593 22 -  10937097 gtaa------gaggtgctatgaagaaga---------
i orcOrc1.KB316932         C 0 I 4
s panHod1.KE114653           1494354 22 -   2937107 gtaa------gaggtgctatggaaaaga---------
i panHod1.KE114653         C 0 I 36
s bosTau8.chr27             18210278 22 +  45407902 gtaa------gaggtgctatggaaaaga---------
i bosTau8.chr27            C 0 I 229
s oviAri3.chr26             17836510 15 +  44077779 gtaa------gaggtgctatg----------------
i oviAri3.chr26            C 0 I 1
s capHir1.chr27             17922029 15 +  44118849 gtaa------gaggtgctatg----------------
i capHir1.chr27            C 0 I 1
s felCat8.chrB1             20467116 27 + 206538554 ataagggaataggtaatgatagaaatg----------
i felCat8.chrB1            I 31 I 22
s canFam3.chr16             18185018 21 -  59632846 ataa------aagtcattttaaaaata----------
i canFam3.chr16            I 162 I 43
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221293           1179931  0 -   1495300 I
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5               9605730  0 - 304825324 I
e taeGut2.chr1A             23692651 539 +  73657157 T
e equCab2.chr27             18738253 1479 -  39960074 M
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=-63166.000000
s hg38.chr8_KI270814v1_alt     64526 22 +    141812 g---aagagatt-------------------------------------------------------------agagaatgaagta----------------------------------
s ponAbe2.chr8              59034365 22 + 153482349 g---aagagatt-------------------------------------------------------------agagaatgaagta----------------------------------
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48107791 22 + 100215132 g---aagagatt-------------------------------------------------------------agagaatgaagta----------------------------------
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190747105 24 - 190850796 gaataagagaat-------------------------------------------------------------agagagtg-agaa----------------------------------
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14111474 24 -  14256875 gaataacagaat-------------------------------------------------------------agagagtg-agaa----------------------------------
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3010619 29 -  10937097 ----agtaaaat-------------------------------------------------------------aagggact-agag-------------------aatggtggg------
i orcOrc1.KB316932         I 4 C 0
s panHod1.KE114653           1494412 64 -   2937107 ----aaaagact---------------------------------ctaaagctgggaaagactgaa--ggca-aaaggaga-agaaggcagcagaggatgagata---------------
i panHod1.KE114653         I 36 I 155
s bosTau8.chr27             18210529 20 +  45407902 ----aaagggac-------------------------------------------------------------tagagaat-ggtg----------------------------------
i bosTau8.chr27            I 229 I 2
s oviAri3.chr26             17836526 20 +  44077779 ----aaaagaat-------------------------------------------------------------aaaggaaa-agaa----------------------------------
i oviAri3.chr26            I 1 I 2
s capHir1.chr27             17922045 20 +  44118849 ----aaaagaat-------------------------------------------------------------aaaggaaa-ataa----------------------------------
i capHir1.chr27            I 1 I 2
s felCat8.chrB1             20467165 86 + 206538554 ----aaaaaaatttttttttcaacgttttttatttatttttgggacagagagagacagagcatgaacggggg-aggggcag-agag----------------------------agaggg
i felCat8.chrB1            I 22 C 0
s canFam3.chr16             18185082 77 -  59632846 ----agaaaaataaataaataaatagaccataagaattgctg---caaaga-------agaataaactgatacaagggaat-aggg----------------------------aatggg
i canFam3.chr16            I 43 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221293           1179931  0 -   1495300 I
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5               9605730  0 - 304825324 I
e taeGut2.chr1A             23692651 539 +  73657157 T
e equCab2.chr27             18738253 1479 -  39960074 M
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=-29685.000000
s hg38.chr8_KI270814v1_alt     64548  10 +    141812 gg--------------------------------------------------------------------------------------------------------------------------------------------t----actattt
s ponAbe2.chr8              59034387  10 + 153482349 gg--------------------------------------------------------------------------------------------------------------------------------------------t----actattt
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48107813  10 + 100215132 gg--------------------------------------------------------------------------------------------------------------------------------------------t----actattt
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190747129  10 - 190850796 gg--------------------------------------------------------------------------------------------------------------------------------------------t----gCCCttt
i calJac3.chr3             C 0 I 1264
s saiBol1.JH378165          14111498  10 -  14256875 gg--------------------------------------------------------------------------------------------------------------------------------------------t----gccattt
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3010648  10 -  10937097 gg--------------------------------------------------------------------------------------------------------------------------------------------g----accattt
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1494631  10 -   2937107 ga--------------------------------------------------------------------------------------------------------------------------------------------t----accgttt
i panHod1.KE114653         I 155 C 0
s bosTau8.chr27             18210551  10 +  45407902 ga--------------------------------------------------------------------------------------------------------------------------------------------c----accattt
i bosTau8.chr27            I 2 C 0
s oviAri3.chr26             17836548  14 +  44077779 gA--------------------------------------------------------------------------------------------------------------------------------------------CTACagccgact
i oviAri3.chr26            I 2 C 0
s capHir1.chr27             17922067  14 +  44118849 gA--------------------------------------------------------------------------------------------------------------------------------------------CTACAGCCAact
i capHir1.chr27            I 2 C 0
s felCat8.chrB1             20467251 150 + 206538554 agacacagaatcggaaacagcctccaggctctgagccatcagcccagagcctgacgcggggctcaaactcacggaccgcgagatcgtgacctggctgaagtcggacgcttaaccaactgcgccacccaggcgcccctagaaat----gccattt
i felCat8.chrB1            C 0 C 0
s canFam3.chr16             18185159  10 -  59632846 gg--------------------------------------------------------------------------------------------------------------------------------------------t----tccattt
i canFam3.chr16            C 0 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221293           1179931   0 -   1495300 I
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5               9605730   0 - 304825324 I
e taeGut2.chr1A             23692651 539 +  73657157 T
e equCab2.chr27             18738253 1479 -  39960074 M
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=27707.000000
s hg38.chr8_KI270814v1_alt     64558 24 +    141812 gaagtcaaatggtcacaaaatact
s ponAbe2.chr8              59034397 24 + 153482349 gaagtcaaatggtcacaaaatact
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48107823 24 + 100215132 gaagtcaaatggtcacaaaatact
i nomLeu3.chr16            C 0 C 0
s saiBol1.JH378165          14111508 24 -  14256875 taagtgaaatggtcagagaagatt
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3010658 24 -  10937097 taaatgaagtggtcagaaaagact
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1494641 24 -   2937107 taaatgaaggagtcagaaaagact
i panHod1.KE114653         C 0 C 0
s bosTau8.chr27             18210561 24 +  45407902 taaatgaaggagtcagaaaagact
i bosTau8.chr27            C 0 C 0
s oviAri3.chr26             17836562 12 +  44077779 ca----------ttggaaaaga--
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17922081 12 +  44118849 ca----------ttggaaaaga--
i capHir1.chr27            C 0 C 0
s felCat8.chrB1             20467401 23 + 206538554 taaatgtagtggtcag-agagact
i felCat8.chrB1            C 0 C 0
s canFam3.chr16             18185169 23 -  59632846 taaatgtagtaggcag-aaagact
i canFam3.chr16            C 0 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221293           1179931  0 -   1495300 I
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e calJac3.chr3             190747139 1264 - 190850796 I
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5               9605730  0 - 304825324 I
e taeGut2.chr1A             23692651 539 +  73657157 T
e equCab2.chr27             18738253 1479 -  39960074 M
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=122700.000000
s hg38.chr8_KI270814v1_alt     64582 43 +    141812 cctcttatgacagggtaa----taagcaaaggcctggataaaagagg
s ponAbe2.chr8              59034421 43 + 153482349 cctcttatgacagggtaa----taagcaaaggcctggataaaagagg
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48107847 43 + 100215132 cctcttatgacagggtaa----taagcaaaggcctggataaaagagg
i nomLeu3.chr16            C 0 C 0
s saiBol1.JH378165          14111532 47 -  14256875 cttcttatgacagtgtaataattaagcaaaggcctggataagagagg
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3010682 46 -  10937097 cctctaatgatagggtaa-tgttaagctgaggtttggataaagagag
i orcOrc1.KB316932         C 0 I 1
s panHod1.KE114653           1494665 46 -   2937107 cctctgatgatagggtaa-tattaagcagaggcttggataaagggag
i panHod1.KE114653         C 0 I 3
s bosTau8.chr27             18210585 46 +  45407902 cctctgatgacagggcaa-tattaagcagaggcttggataaagggag
i bosTau8.chr27            C 0 I 3
s oviAri3.chr26             17836574 35 +  44077779 -ctctgaagctgggaaaa-gactga----------aggcaaaaggag
i oviAri3.chr26            C 0 I 1130
s capHir1.chr27             17922093 35 +  44118849 -ctctgaagctgggaaaa-gactga----------aggcaaaaggag
i capHir1.chr27            C 0 I 1137
s felCat8.chrB1             20467424 45 + 206538554 cctct-atcatagggtaa-tattaagcagaagcttggataaagagag
i felCat8.chrB1            C 0 I 1
s canFam3.chr16             18185192 46 -  59632846 cctttaatgatagggtaa-tattcagcagaatcttgaataaagagtg
i canFam3.chr16            C 0 I 1
s odoRosDiv1.KB229312         742328 46 -   2017862 cctctaatgatagggtaa-tattaagcagaatcttggaaaaagagtg
i odoRosDiv1.KB229312      N 0 I 1
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221293           1179931  0 -   1495300 I
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e calJac3.chr3             190747139 1264 - 190850796 I
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5               9605730  0 - 304825324 I
e taeGut2.chr1A             23692651 539 +  73657157 T
e equCab2.chr27             18738253 1479 -  39960074 M
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=43915.000000
s hg38.chr8_KI270814v1_alt     64625 38 +    141812 aaataaaccatactgttgtctgattt------aaaaaaaaaaaa
s ponAbe2.chr8              59034464 35 + 153482349 aaataaaccatactgttgtctgattt---------aaaaaaaaa
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48107890 37 + 100215132 aaataaaccatactgttgtctgattt-------aaaaaaaaaaa
i nomLeu3.chr16            C 0 C 0
s saiBol1.JH378165          14111579 28 -  14256875 aagtaagccatgctgatacctgat----------------gaaa
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3010729 28 -  10937097 aagtgagccatggtgatatttggt----------------ggaa
i orcOrc1.KB316932         I 1 C 0
s panHod1.KE114653           1494714 44 -   2937107 aagtgagctctggtgatatttggCTCTTTTTTATGGGAAAGGAA
i panHod1.KE114653         I 3 I 205
s bosTau8.chr27             18210634 42 +  45407902 aagtgagctatggtgatatttggctc--ttttatgggaaaggaa
i bosTau8.chr27            I 3 I 156
s felCat8.chrB1             20467470 28 + 206538554 aagtaagccatggtgatatctcgt----------------ggaa
i felCat8.chrB1            I 1 C 0
s canFam3.chr16             18185239 28 -  59632846 aagtaagccatggtactatctggt----------------ggaa
i canFam3.chr16            I 1 C 0
s odoRosDiv1.KB229312         742375 28 -   2017862 aagtgagcaatggtgatatctggt----------------ggaa
i odoRosDiv1.KB229312      I 1 C 0
e oviAri3.chr26             17836609 1130 +  44077779 I
e capHir1.chr27             17922128 1137 +  44118849 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221293           1179931  0 -   1495300 I
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e calJac3.chr3             190747139 1264 - 190850796 I
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5               9605730  0 - 304825324 I
e taeGut2.chr1A             23692651 539 +  73657157 T
e equCab2.chr27             18738253 1479 -  39960074 M
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=48053.000000
s hg38.chr8_KI270814v1_alt     64663 31 +    141812 aagcactccaggaaaagagcaccac-------atatgc
s ponAbe2.chr8              59034499 31 + 153482349 aagcactccaggaaaagagcaccac-------acatgc
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48107927 31 + 100215132 aagcactccagaaaaagagcaccac-------acatgc
i nomLeu3.chr16            C 0 C 0
s saiBol1.JH378165          14111607 31 -  14256875 aagcattccaggccaaggggagcac-------acgtgc
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3010757 31 -  10937097 gagcttcccgggcaaagggtgtcac-------aagtgc
i orcOrc1.KB316932         C 0 C 0
s bosTau8.chr27             18210832 38 +  45407902 gaagtcccagagccctgggtgacacttggtggaagagt
i bosTau8.chr27            I 156 I 8
s felCat8.chrB1             20467498 31 + 206538554 gagcattccaggcaaagggcaccac-------aagtgc
i felCat8.chrB1            C 0 C 0
s canFam3.chr16             18185267 31 -  59632846 gagcattccaggcaaagggcaccac-------aagtgc
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         742403 30 -   2017862 gagcattccagacaaagagcaccac-------aagtg-
i odoRosDiv1.KB229312      C 0 C 0
e oviAri3.chr26             17836609 1130 +  44077779 I
e panHod1.KE114653           1494758 205 -   2937107 I
e capHir1.chr27             17922128 1137 +  44118849 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221293           1179931  0 -   1495300 I
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e calJac3.chr3             190747139 1264 - 190850796 I
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5               9605730  0 - 304825324 I
e taeGut2.chr1A             23692651 539 +  73657157 T
e equCab2.chr27             18738253 1479 -  39960074 M
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=417987.000000
s hg38.chr8_KI270814v1_alt     64694 176 +    141812 aaaggccctgggataga---agcacacacgcctggcgtctttgaagattgcagtaagcaaggggagaatgaccgaactgcagatcagagaagtgtt-aggggacaag----tttgagatcttgtttgccatgacaggatattggcttttactttgatctgcaaaatcattggaaggttttaagc
s ponAbe2.chr8              59034530 180 + 153482349 aaaggccctgggataga---agcacacatgcctggtgtctttgaagactgcagtaagcaaggggagaatgactgaactgcagatcagagaagtatt-aggggacaagtttatttaagatcttgtttgccatgacaggatattggcttttactttgatctgcaaaatcattggaaggttttaatc
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48107958 180 + 100215132 aaaggccctcggataga---agcacacacgcctggtgtcttcgaagattgcagtaagcaaggggagaatgactggactgcagatcagagaagtgtt-aggggacaagtttatttaagatcttgtttgccatgacaggatattggcttttactttaatctgcaaaatcattggaaagttttaagc
i nomLeu3.chr16            C 0 C 0
s saiBol1.JH378165          14111638 141 -  14256875 aaaggccttgaggcaga---agcacatctggttggtgtctctgaagactgcaagaatagagcggagactgattggactaaagatctgagaagggtc-aggggacaagatggtttaagaccttgctagccg---------------------------------------cagaaggttttaagc
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3010788 182 -  10937097 aaaggccctgaggcagaagaagcaaccctgcctgacaccttcgaggattaccgaggaagaggggaacatg-ttggacttgagaacaggaaagtgtc-agggaacaagatgatttaaggccttgttcactgtggtgagatagtggcttttactttgatctgaaaaacgattgcgaggttttaagc
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1494963 183 -   2937107 aaaggccctgaggcagaagaagcacgtttgcctggcatcttggaggattatcataaaagagggggacttgactggacttgagatcagggaagagtc-agggaacaagatgatccaaagccttgttcactgtggcaagttagtgacttttactttgatctgaaaaatgactgcaagtttttaagc
i panHod1.KE114653         I 205 I 439
s bosTau8.chr27             18210878 183 +  45407902 aaaggccctgaggcaggagaagcacgtttgcctggcatcttggaggattatcatggaagagggggacttgattggacttgagatcagggaagagtc-agggaacaagatgatccaaagccttgttcactgtagcaagttagtgacttttactttgatctgaaaaatgattgcaagtttttaagc
i bosTau8.chr27            I 8 I 440
s felCat8.chrB1             20467529 179 + 206538554 aaagaccctgaggcaga----acacatattcctggcatcttttaggatggcaatgagagaggagaacatgattggatttgagatcgaggaagtatc-agggaacaagatgattgaaggcctagccagctgtggcaagacattggcttttactttgatctggaaagccactggaagattttaagc
i felCat8.chrB1            C 0 C 0
s canFam3.chr16             18185298 181 -  59632846 aaacaccctgaggcaga---agcacatctgcttggcatcttcgaggattgcagtgtgagaggggaacatgattggacttgagatcaggggagtgtcaagagaacaagatgatttaagtctttgtcagctgtggcaagatactggcttttactttgatctggaaaattactggaaggttttaagc
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         742433 175 -   2017862 ---ccccctgaggcaga---cacacatct--ttggtatctttgaggattgcagtgagagaggggaacatgattgaacttgagatcaggaaagtgtc-agggaacaagatgatttaaggctttgtcagctgtggcaagatactggcttttactttgatctggaaaaccactggaaggttttaaaa
i odoRosDiv1.KB229312      C 0 C 0
e oviAri3.chr26             17836609 1130 +  44077779 I
e capHir1.chr27             17922128 1137 +  44118849 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221293           1179931   0 -   1495300 I
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e calJac3.chr3             190747139 1264 - 190850796 I
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5               9605730   0 - 304825324 I
e taeGut2.chr1A             23692651 539 +  73657157 T
e equCab2.chr27             18738253 1479 -  39960074 M
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=128345.000000
s hg38.chr8_KI270814v1_alt     64870 35 +    141812 agacaaaaaacattaattgtcttatgcttttaagg-
s ponAbe2.chr8              59034710 35 + 153482349 agacaaaaaacattaattgtcttatgcttttaagg-
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48108138 35 + 100215132 agacaaaaaacattaattgtcttatgcttttaagg-
i nomLeu3.chr16            C 0 C 0
s saiBol1.JH378165          14111779 35 -  14256875 agatgaaaaacattatttgccttatgctttaaaag-
i saiBol1.JH378165         C 0 I 245
s orcOrc1.KB316932           3010970 35 -  10937097 -agatgaaaacatgacctgtctcatgtttttaaagg
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1495585 36 -   2937107 AAAAAGAAAatattatctgtctcatgtttcaaaagg
i panHod1.KE114653         I 439 C 0
s bosTau8.chr27             18211501 36 +  45407902 AAAAAGAAAatattatctgtctcatgtttcaaaagg
i bosTau8.chr27            I 440 C 0
s oviAri3.chr26             17837739 36 +  44077779 aaaaagaaaatattatctgtctcatgtttcaaaagg
i oviAri3.chr26            I 1130 C 0
s capHir1.chr27             17923265 36 +  44118849 aaaAAGAAAatattatctgtctcatgtttcaaaagg
i capHir1.chr27            I 1137 C 0
s felCat8.chrB1             20467708 36 + 206538554 agataagaaacattatctgtcttatatttttaaagg
i felCat8.chrB1            C 0 C 0
s canFam3.chr16             18185479 36 -  59632846 agatgaaaaacattatctgtcttatatgttaaaagg
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         742608 36 -   2017862 agatgaaaaacatgatctgtcttatgttttaaaagg
i odoRosDiv1.KB229312      C 0 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221293           1179931  0 -   1495300 I
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e calJac3.chr3             190747139 1264 - 190850796 I
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5               9605730  0 - 304825324 I
e taeGut2.chr1A             23692651 539 +  73657157 T
e equCab2.chr27             18738253 1479 -  39960074 M
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=13323.000000
s hg38.chr8_KI270814v1_alt     64905 3 +    141812 ctt
s ponAbe2.chr8              59034745 3 + 153482349 ctt
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48108173 3 + 100215132 ctt
i nomLeu3.chr16            C 0 C 0
s orcOrc1.KB316932           3011005 3 -  10937097 ctt
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1495621 3 -   2937107 ctt
i panHod1.KE114653         C 0 C 0
s bosTau8.chr27             18211537 3 +  45407902 ctt
i bosTau8.chr27            C 0 C 0
s oviAri3.chr26             17837775 3 +  44077779 ctc
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17923301 3 +  44118849 ctc
i capHir1.chr27            C 0 C 0
s felCat8.chrB1             20467744 3 + 206538554 ctt
i felCat8.chrB1            C 0 C 0
s canFam3.chr16             18185515 3 -  59632846 ctt
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         742644 3 -   2017862 ctt
i odoRosDiv1.KB229312      C 0 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221293           1179931 0 -   1495300 I
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e calJac3.chr3             190747139 1264 - 190850796 I
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5               9605730 0 - 304825324 I
e taeGut2.chr1A             23692651 539 +  73657157 T
e equCab2.chr27             18738253 1479 -  39960074 M
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e saiBol1.JH378165          14111814 245 -  14256875 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=283586.000000
s hg38.chr8_KI270814v1_alt     64908 62 +    141812 accctggttgctcagtgaagaataaagtacagggaacatgagagaatacatgggagatcaat
s ponAbe2.chr8              59034748 62 + 153482349 accctggttgctcagtgaagaataaagtacagggaacatgagagaatacatgggagagcagt
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48108176 62 + 100215132 accctgcttgctcagtgaagaataaactacagggaacataagagaatacatgggagagcagt
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190748403 62 - 190850796 attctggttgctcagtgaagagcaaagagcagggagcatgagagagtaagtgggagaggaga
i calJac3.chr3             I 1264 C 0
s saiBol1.JH378165          14112059 62 -  14256875 actctgtttgctcagtgaagagcaaagagcagggagcatgagagagtaagtgggagaggagt
i saiBol1.JH378165         I 245 C 0
s orcOrc1.KB316932           3011008 62 -  10937097 actctggctgctcagtgaagaataaaatgcagcggacaagagtgaataaatcagaaatgagt
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1495624 62 -   2937107 actctagcagatgagtgaagaataaaatgcaggggacaagagtgaatatatgagaaatgagt
i panHod1.KE114653         C 0 C 0
s bosTau8.chr27             18211540 62 +  45407902 actctagcagatgagtgaagaataaaatgcaagggacaagagtgaatatatgagaaatgagt
i bosTau8.chr27            C 0 C 0
s oviAri3.chr26             17837778 62 +  44077779 actctagcagataagtgaagaataaaatgcaggggacaagactgaatatatgagaaatgagt
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17923304 62 +  44118849 actctagcagatgagtgaagaataaaatgcaggggacaagagtgaatatatgagaaatgagt
i capHir1.chr27            C 0 C 0
s felCat8.chrB1             20467747 62 + 206538554 tctctggctgctcagtaaaaaataaaacacagggggagagaatgattaaatgagaaaccagt
i felCat8.chrB1            C 0 C 0
s canFam3.chr16             18185518 62 -  59632846 tctctggctactcagtgaagaataaaatgcagggggcaagagtgaataaatgagaaaccagt
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         742647 62 -   2017862 tctctagctgctcagtgaagaataaaatgcagggggcaagaatgaataaatgagaaaccagt
i odoRosDiv1.KB229312      C 0 I 252
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221293           1179931  0 -   1495300 I
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5               9605730  0 - 304825324 I
e taeGut2.chr1A             23692651 539 +  73657157 T
e equCab2.chr27             18738253 1479 -  39960074 M
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=58233.000000
s hg38.chr8_KI270814v1_alt     64970 18 +    141812 caagatgctacttc-agta
s ponAbe2.chr8              59034810 18 + 153482349 taagatgctacttc-agta
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48108238 18 + 100215132 taagatgctacttc-agta
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190748465 18 - 190850796 caggaggctgtttc-cata
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14112121 18 -  14256875 caggaggctgttgc-cata
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3011070 18 -  10937097 taagaagctgtt-tcaata
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1495686 17 -   2937107 taagaggctgtt-t-aata
i panHod1.KE114653         C 0 C 0
s bosTau8.chr27             18211602 17 +  45407902 taagaggctgtt-t-aata
i bosTau8.chr27            C 0 C 0
s oviAri3.chr26             17837840 17 +  44077779 taagaggctgtt-t-aata
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17923366 17 +  44118849 taagaggctgtt-t-aata
i capHir1.chr27            C 0 C 0
s felCat8.chrB1             20467809 18 + 206538554 taagaagctgctat-aaca
i felCat8.chrB1            C 0 C 0
s canFam3.chr16             18185580 18 -  59632846 taagaaactgctat-agta
i canFam3.chr16            C 0 I 228
s odoRosDiv1.KB229312         742961 18 -   2017862 caagaagctgctat-aata
i odoRosDiv1.KB229312      I 252 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221293           1179931  0 -   1495300 I
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5               9605730  0 - 304825324 I
e taeGut2.chr1A             23692651 539 +  73657157 T
e equCab2.chr27             18738253 1479 -  39960074 M
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=2037782.000000
s hg38.chr8_KI270814v1_alt     64988 591 +    141812 atccatgacaatgacaacgtaaagtaatgcaaggtgcacgtgatgggtatggta---aggaga--ttagattctgaatagagctcaacagtgtatgctgatatgaggtgtaagaaacaaaaaggagtcagggtgagttttctggcctagtagctggtacactagagagattatttactgagatggggaagaccgatga--------gtggagggtccaggggttaagagt------ggaggatcaaggatttccttgtggaagtgtgctgttttcattgtatattaatcttcctagtggcaataattagcaggcaatt--atataggagtctagacttcagaggaaatgtaagagctggagatatacatttatgtatcatgtgcatatagatggaatttaataccatcaggctttgtgagatcccatagggatgagtgcacatagaaaaagggctgaagactgaggcctgggatactcccatgttaaaagatGAATGTTTCTTTGACAGTTCGCATTTATAGAAATGATGGCACAATAGCCTAATGCTGAAACCCTACTCAGTTCATGG--------TAAAACACAATTTTTATTTTTTTGGGTCGCTGAATAGCATTTA
s ponAbe2.chr8              59034828 597 + 153482349 atccatgacaatgacaacgtaaagtaatgcaaggtgcacgtgatagatatggta---aggaga--ttagattctgaatagagctcaacagcgtatgctgatatgaggtgtaagaaacaaaaaggagtcagggtgagttttctggcctagtagccggtacactagagagattatttactgcgatggggaagactgatga--------gtggagggtccaggggttgagagtggaggaggaggatcaaggatttccttgtggaagtgtgctgttttcattgtttattaatcttcctagtggcaataattagcaggcaatt--atataggagtctagacttcagaggaaatgtaagagctggagatatacatttatgtatcatgttcatatagatggaatttaataccatcaggcttcgtgagatcccatagggatgagtgcacatagaaaaagggctgaagactgaggcctgggatactcccatgttaaaagatGAAAGTTTCTTTGACAGTTTACATTTATAGAAATGATGGCACAATAGCCTAATGCTGCAACCCTACTCAGTTCATGG--------TAAAACACAATTTTTATTTTATTGGGTCGCTGAATAGCATTTA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48108256 576 + 100215132 atccatgacaatgacaacgtaaagtaacgcaaggtgcacatgatgggtatggta---aggaga--ttagattctgaatagagctcaacagtgcatgctgatatgaggtgtaagaaacaaaaaggagtcagggtgagttttctggcctagtagctggtacactagagagattatttaatgagatggggaagactgatga--------gtggagggtccaggggttgagagt------ggaggatcaaggatttccttgtggaagtgtgctgttttcattgtttattaatcttcctagtggcaatgattagcaggcaatt--atataggagtctagacttcagaggaa---------------atatacatttatgtatcttgtgcatatagatggaatttaataccattaggcttcgtgagatcccatagggatgagtgcacatagaaaaagggctgaggactgaggcctgggatactcccatgtgaaaagatGAATGTTTCTTTGACAGTTTGCATTTATAGAAATGATGACACAATAGCCTAGTGCTGAAACCCTACTCAGTTCATGG--------TAAAACACAATTTTTATTTTATTGGGTCACTGAATAGCATTTA
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190748483 583 - 190850796 atctattaaaacaatgacaaaaagtgaagctgggtgcacacagtgggtgtggaa---aggggagctcgggtgctgaatatggttcaacagtgtatgctgataggaggtgtaagaagcaaagaggggtcagggaaagttttctggcctaacagctggtatgctggaggtgctatttactgagatggagaggactgagta--------gggtagggcccagggcttgaaggt------ggaggatcaagaattccctt------atatgatagttgagttgtctattaatcttccaagtagttataattaacagataatt--aaatatgagtctaaattttagaggagaggtgggagctagaaatacacattcatgaaccatgcacatatacgtggaatttaatgcaatccggtttcatgagatcacatagtcatgagtgcacctaagaaaagggctgaggact-----------TTTAACCATGTTAAAAGATAAATGTTCCTTTTACATTTTGAATTTATGGCAATGATGGGACAGTAGACAACTGCTG-AACTTTACTCAGTTCATAGTAAAATATTAAAACAAAATTTCTGTTTCATCGAATCACTGAATGGCATTTA
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14112139 583 -  14256875 atccatgaaaacaatgacacaaagtgaggctgggtgcacacagtgggtgtggca---agcggacctggggagctgaatacagttcaacactgtatgctgataggaggggtaagaagcaaagaggggtcagggcaagttttctggcctaacagctggtatgatggaggtactatttactgagatggagaggactgagca--------gggtagggcccagggcttgaaggt------ggaggatcaagaattccctt------atatgataactgagttgtctattaagcttccaagtagttataattagcagataatt--aaatatgagtttaaattttagaggagaggtaggagctggaaatatgcattcatgaaccgtgcacatatacgtggaatttaatgtcatccggcttcatgagatcatatagtcatgagtgtacccaagaaaagggctgaggact-----------TTTAAGCATGTTAAAAGATAAATGTTCCTTTTACATGTTGAATTTATGGCAATGATGGCACAGTAGACAACTGCTG-AACTATACTCAGTTCATAGTAAAATGTTAAAACAAAATTCCAGTTTCATTGAATCACCGAATGGAATTTA
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3011088 587 -  10937097 atctaggaaaatgat--tacaaagtgaactagagtgaactcaatagatgtggtg---agaaaaggtgagattctgaatatagttcaacagtgtttgctggt-tggggtgtaagaaacaaagaggagtcagggtgaaccttctgacctagtaactggtacagtggagctgccacttactgagatcgggaagactgagaacagagcaggggtgggggccgaagaatgggagt------gagggagcaagaattctcctgtgtttgtgtg--gtttgagttgtctattactattccaagcagcaagaattagcaggcagttagagatacgagcctggagttca-gggtgcagctggaactagagattcatatttgtgcagctttagcacgtagatggcatttaatgccattgggcttcac---------cagggatgagcgtagacagcaagagggctaaggattgagacctgggatgctcttgtgttaaaaaatgaaggTTTCTTTTACATTTTGAATCTATAAGAATTATGATACAATAGTCAAATGCTGAAACTCTGCTCAGTTCATAA--------TAAAACAAAATTCCTA-TTTTTCAGGTCACCAAATGGCACTTA
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1495703 586 -   2937107 acccaggaaaatgatg-tacagagggaagtagagtgaactcaatagatgtggtg---agaaaa-gtgaggttc-gaatacagttcaacagtgtttgctggt-tggggtgtacaaagtaaagaggagtcaaggtgagcttttttgcccagcaac-ggtagtatggagtggccccttgctgagatggggaagatcgagggcagagcaggtgtaggggcccaaggatgtccgc------gagggagcaagaatcctcctgtgcatatgtaatgtttgaattgtctatgactcttgcaagaggcaacaattagcaggcagttagagataggagcctggagctca-ggatgcagttgaaactagagatacacacttgtgtgtcttcaccgtgtaggtgacatttaataccattggacttctt---------tggggataagtctagatagaaaga-ggctaaggactgaaatctgagatactcttgggttaaaagatgaagatTTCTTTTACATTTTGAACCTACAGAAATGATGATACAACAGTCAAATGCTGAAATGCTGCTCAGTTCATAG--------TAACACTAAATTCCTG-TTTATCAGGTCACCAAGTAGCACTGA
i panHod1.KE114653         C 0 C 0
s bosTau8.chr27             18211619 583 +  45407902 acccaggaaaatgatg-tacggagggaagtagagtgaactcaatagatgtggtg---agaaaa-gtgaggttc-gaatatagttc----gtgtttgctggt-tggggtgtacgaagtaaagaggagtcaaggtgagcttttttgcccagcaatgggtagcatggagtggccccttgctaagatggggaagatcaaaggcagagcaggtgtaggggcccaaggatgtcagc------gagggagcaggaatcctcctgtgcatatgtaatgtttgacttgtctatgactcttccaagaggcaagaattagcatgcaattagagatatgagcctggagctca-ggatgcagttgaaaccagagatacacatttgtgtgtcttcagcgtgtaggtgacatttaataccactggacttctt---------tggggatgagtctagatagaaaga-ggctaaggactgaaacctgagatactcttgggttaaaaggtAAAGATTTCTTTTACATTTTGAACTTACAGAAACGACGATACAACAGTCAAATGCTGAAATGCTGCTCAGTTCATAG--------TAACACAAAATTCCTG-TTTATCAGGTCACCAAGTGGCACTGA
i bosTau8.chr27            C 0 C 0
s oviAri3.chr26             17837857 583 +  44077779 acccaggaaaatgatg-tatggagggaagtagagtgaactcaatagatgtggtg---agaaaa-gtgaagttc-gaatacagttcagcagtgtttgctggc-tggggtgtacgaagtaaagaggagtcaaggtgagcttttttgcccagtgac-ggtagcgtggagtggccccttgctgagatggggaagatcgagggcagagcaggtgcaggggcccaaggatgcccgc------gagggaacaagaatccctctgtgcatatgtaatgtttgaattgtctatgactcttccaagaggcaacaattagcaggcagttagagacaggagcctggagctca-ggatgcagttgaaactagagatacacatttgtgtgtcttcaccgtgtaggtgacatttaataccattggacttctt---------tggggataagtctagatagaaaga-ggctaaggactgaaatctgagatactcTTGGGATAAAAGATGAAGATTTCTTTTACATTTTGAACCTACAGAAAC---GATACAACAGTCAAATGCTGAAACGCTGCTCAGTTCATAG--------TAACACTAAATTCCTG-TTTATCAGGTCACCAAGTGGCACTGA
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17923383 585 +  44118849 acccaggaaaatgatg-tatggagggaagtagagtgaactcgatagatgtggtg---agaaaa-gtgaggttc-gaatacagttcaacagtgtttgctggt-tggggtgtacgaagtaaagaggagtcaaggtgagctttttcgcccagcaat-ggtagcatggagtggccccttgctgagatggggaagatcgagggcagagcaggtgtaggggcccaaggatgtcagc------gagggagcaagaatcctcctgtgcatatgtaatgtttgaattgtctatgactcttccaagaggcaacaattagcaggcagttagagataggagcctggagctca-ggatgcagttgaaactagagatacacatttgtgtgtcttcaccgtgtaggtgacatttaataccattggacttctt---------tgggg-taagtctagatagaaaga-ggctaaggactgaaatctgagatactcttgggttaaaagatgaagatTTCTTTTACATTTTGAACCTACAGAAACGATGATACAACAGTCAAATGCTGAAACGCTGCTCAGTTCATAG--------TAACACTAAATTCCTG-TTTATCAGGTCACCAAGTGGCACTGA
i capHir1.chr27            C 0 C 0
s felCat8.chrB1             20467827 556 + 206538554 atctaagaaaacaatgatgtaaaatgcagtacagtgaactcaatgaatgtggtgagaagaaga-------ttctgaatgtagctcaacagtgtttgttgat-tggggtgtaagaaacaaagaggagtcagggtgaattttctggcctggcaacaggtaccctggagctgatatttactgagttgagaaaggtagagggcagagcaggtgt-ggggcccaaggttaggagt------ggaggaccgagaattctctcatggatatacgatgcctgagttgtctcttagtcttccaagtggtgataattagcaggtagttggagatatgagtctggagttcatgggagcggtcagagctagagatctccatttgtgaacctccagcatagagacgata--taatgccattgggctgcat---------gatggc-------------------agctaagggCTGAGACCTGTGATACTCCC--ATTCAAAGATGAA---------TGAATTTTGAATCTATAGAAATGATGATATAGTAGTTAAACACTGAAACTCTGCTCTGTTCACAG--------TAAAACAAAATTGCTGTTTTACCAGGTCCCTGAATGGCATTTA
i felCat8.chrB1            C 0 C 0
s canFam3.chr16             18185826 551 -  59632846 atccaggaaaacgatgatataaaatgcagcacagtgaactcaatggatgtggtg---agaaga-------ttctgaatgtagttcaatagtgtttgctgac-tgaggtgtaaaaaacaaaaaggagtcagggtgagttttctggtctggcaactggtatcctggaactgacatttgctaagatggggaaagtgaagagcagtgcagatgt-ggggcctgagattagaagt------ggaggaccaagaattatctcatggaagt---atgtgtgaattgtctattagcctactaaataattataattagcagacagttggagatatgagtgtggagttcaagggagcagtcagagctggacatctccatttgtgaacctccagcatatagat-atatttaatgccatcaagctgCAG---------CATGAT-------------------GGCTGAGGGCTGAGACCCATGATATTCCC--ATTCAAAGATGAA---------TTAATTTTGAATCTACAAAAATGATGATAAAATAGCCAAACACTGAAACTTTGCTCAGTTTACAG--------TAAAACAAAATTCCTATTTTATCAGATCGCTGAATGGCATTTA
i canFam3.chr16            I 228 I 413
s odoRosDiv1.KB229312         742979 552 -   2017862 atgcgggaaaacaatgatgtaaaatgcagtacagtgaactcagtggatgtggtg---agaaga-------ttctgaatgtagtttgacagtgtttgttgac-tggaatgtaagaaacaaagaggactcagggtgagttttctggcctggcaactggtatcctggagctgacgtttgctgagttggggtaagtgaagggcagcacaggcat-gaggact-aggttaggagt------gggggaccaagaattctctcatggaagtataatgtctgagttgtctattagtcttccaagtggttaaaaatagtagacagttggagatatgagtgtggagttcaagggagcagtcagagcgggacatctccatttgtgaacctccagtatgtagatgatatttaatgccatCAAGCC-CAC---------CATGGT-------------------GGCTGAGGGCTGAGACCTATGATACTCCC--ATTAAAAGATGAA---------TGAA-TTTGAATCTATAGAAATGATGATAAAATAGTCAAACACTGATACTCTGCTCAGTTCACAG--------TAAAACAAAATTCCTATTTTATCAGGTCACTGAATGGCATTTA
i odoRosDiv1.KB229312      C 0 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221293           1179931   0 -   1495300 I
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5               9605730   0 - 304825324 I
e taeGut2.chr1A             23692651 539 +  73657157 T
e equCab2.chr27             18738253 1479 -  39960074 M
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=418739.000000
s hg38.chr8_KI270814v1_alt     65579 87 +    141812 AAATTCAGAATATTTGCAGTGATCCCAAATATCTTAATAAAGATGAAAACCTAAGTTCAGATTGGTGGCCTAGACTCTGCCTTCCTT
s ponAbe2.chr8              59035425 87 + 153482349 AAATTCAGAATATTTGCAGTGATCCCAAATATCTTAATAAAGATTAAAACCTAAGTTGAGATTGGTGGCCTAGACTCTGCCTTCCTT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48108832 87 + 100215132 AAATTCAGAATATTTGCAGTGATCCCAAATATCTTAATAAAGATTAAAGCTTAAGTTCAGATTGGTGGCCTAGACTCTGCCTTCCTT
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190749066 87 - 190850796 AAATTCAGAATACTTGGAGAGATGCCAAATATCTTAATAAAGATGAAAGTCTAAATTCAGATTGGTGGCCTAGACTCTGCCTTCCTT
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14112722 87 -  14256875 AAATTCAGAATACTTGCACAGATGTCAAATATCTTAATAAAGATGAAAGCCTAAATTCAGATTGGTGGCCTAGACTCTGCCTTCCTT
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3011675 87 -  10937097 AAGTTCAGAATTTTAGCAGGGATCACAAACCTTCTAAGAAAGGTTAAAGTCTAAACTCAGATCACTGGCCAAGACTCTGCCTTCCTT
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1496289 86 -   2937107 AAATTCAGAATTCTAGCAGGGATCACAAACAGGA-AAGAAAAGTTAAAGTCTAAACTCAGATCAGTGGCCAAAACCCTGCCTTCCTT
i panHod1.KE114653         C 0 I 138
s bosTau8.chr27             18212202 86 +  45407902 AAATTCAGAATTCTAGCAGGGATCACAAACAGGA-AAGAAAAGTTAAAGTCTAAACTCAGATCAGTGGCCAAAACCCCGCCTTCCTT
i bosTau8.chr27            C 0 I 137
s oviAri3.chr26             17838440 86 +  44077779 AAATTCAGAATTCTAGCAGGGATCACAAACAGGA-AAGAAAAGTTAAAGTCTAAACTCAGATCAGTGGCCAAAACCCTGCCTTCCTT
i oviAri3.chr26            C 0 I 137
s capHir1.chr27             17923968 86 +  44118849 AAATTCAGAATTCTAGCAGGGATCACAAACAGGA-AAGAAAAGTTAAAGTCTAAACTCAGATCAGTGGCCAAAACCCTGCCTTCCTT
i capHir1.chr27            C 0 I 133
s felCat8.chrB1             20468383 87 + 206538554 AAGTTCAGAATTTTAGTGGGGATCATAAATATCCTAAGAAAGGTTAAAGCCTAAGCTTGCATTGCTGGCCAAGACTCTGCATTCCTT
i felCat8.chrB1            C 0 C 0
s canFam3.chr16             18186790 87 -  59632846 AAGTTCAGAATTTTAGCGAGGATCGCAAATATCCTAAGAAAGGTTAAAACCTAAGCTCAGATTGCTGGCCAAAACTCTGCCTTCCTT
i canFam3.chr16            I 413 C 0
s odoRosDiv1.KB229312         743531 87 -   2017862 AAGTTCAGAATTTTAGCAGGGATCACAAATATCCTAAGAAAGGTTAAAGCCTAAGCTCAGATTGCTGGCCAAGCCACTACCTTTTAT
i odoRosDiv1.KB229312      C 0 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221293           1179931  0 -   1495300 I
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5               9605730  0 - 304825324 I
e taeGut2.chr1A             23692651 539 +  73657157 T
e equCab2.chr27             18738253 1479 -  39960074 M
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=35743.000000
s hg38.chr8_KI270814v1_alt     65666 10 +    141812 GATCCTCC-CA
s ponAbe2.chr8              59035512 10 + 153482349 GATCCTCC-CA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48108919 10 + 100215132 GATCCTCC-CA
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190749153  9 - 190850796 GATTGT-C-TA
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14112809  9 -  14256875 GATCGT-C-TA
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3011762 10 -  10937097 GATCCTCC-CA
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1496513 10 -   2937107 GACCCTCC-CA
i panHod1.KE114653         I 138 C 0
s bosTau8.chr27             18212425 10 +  45407902 GACCCTCC-CA
i bosTau8.chr27            I 137 C 0
s oviAri3.chr26             17838663 10 +  44077779 GACCCTCC-CA
i oviAri3.chr26            I 137 C 0
s capHir1.chr27             17924187 10 +  44118849 GACCCTCC-CA
i capHir1.chr27            I 133 C 0
s felCat8.chrB1             20468470 10 + 206538554 GACCCTCC-Ca
i felCat8.chrB1            C 0 I 1
s canFam3.chr16             18186877 10 -  59632846 GACCCTCC-CA
i canFam3.chr16            C 0 I 1
s odoRosDiv1.KB229312         743618 11 -   2017862 AATTTTTTATA
i odoRosDiv1.KB229312      C 0 I 1
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221293           1179931  0 -   1495300 I
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5               9605730  0 - 304825324 I
e taeGut2.chr1A             23692651 539 +  73657157 T
e equCab2.chr27             18738253 1479 -  39960074 M
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=283283.000000
s hg38.chr8_KI270814v1_alt     65676 89 +    141812 TTtaaaaata---acaataat--------gataaaaataagaaga-aaaTATTTATGGGTCACTAGATA---ATGTAATACACTCAAAGGCAGATCCATTT-TTT
s ponAbe2.chr8              59035522 89 + 153482349 TTtaaaaata---acaataat--------gataaaaataagaaga-aaaTATTTATGGGTCACTAGATA---ATGTAATACACTCAAAGGTAGATCCATTT-TTT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48108929 89 + 100215132 TTtaaaaata---acaataat--------gataaaaataagaaga-aaataTTTATGTGTCACTAGATA---ATGTAATACACTCAAAGGTAGATCCATTT-TTT
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190749162 91 - 190850796 TTTAAAAA-A---ACAATAAT--------GATAAGAGTAAGAAGA-AAATATGTATGAATCACTAAATA-TGTTGCAATACACTCAAAGATAGATTCATTTCTTT
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14112818 92 -  14256875 TTTAAAAATA---ACAATAAT--------GATAATAGTAAGAAGA-AAATACATATGAATCACTAGATA-TGTTGCAATACACTGAAAGATAGATCCATTTCTTT
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3011772 89 -  10937097 TTAGGGAATAACCACATCAAT--------AATAACA-----AAAA-ATATATTTATGGATCACAAGGTAATGTCATAATATACTCAAAGACAGATCCATT--TCA
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1496523 83 -   2937107 TTAGAAAATA---ACATCAGT--------AATAACA-----CAGATATATATTTATGCATCACAAGATAAAGTCATAATACACTCAA----AGATCCATT--TTA
i panHod1.KE114653         C 0 C 0
s bosTau8.chr27             18212435 80 +  45407902 TTAGAA---A---ATATCAGT--------AATAACA-----CAAATATATATTTATGCATCACAAGGTAAAGTCATAATACACTCAA----AGATCCATT--TTA
i bosTau8.chr27            C 0 C 0
s oviAri3.chr26             17838673 83 +  44077779 TTAGAAAATA---ATATGAGT--------AATAACA-----CAGATATATATTTATGCATCACAAGATAAAGTCATAATACACTCAA----AGATCCATT--TTA
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17924197 83 +  44118849 TTAGAAAATA---ATATCAGT--------AATAACA-----CAGATATATATTTATGCATCACAAGATAAAGTCATAATACACTCAA----AGATCCATT--TTA
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18739786 80 -  39960074 ttaaaaaaTA---AT--------------AATAATA-----AAGA-AAATATTTATGGATCTCTAAGTAATGTTGCAATATGCTCAAAAGTGGATCCATT--TTG
i equCab2.chr27            M 1479 C 0
s felCat8.chrB1             20468481 86 + 206538554 ttaagaaata---acaataaa--------aattata-----aaga-aaataTTTATGGATCACTAAGTAATGTTGCAATACACTCAAAGGTAGAGTCATT--TTG
i felCat8.chrB1            I 1 C 0
s canFam3.chr16             18186888 94 -  59632846 TTAGAAAATA---ACAATAACAACAATACAAATCAA-----ACAA-AAATATTTATGGGTCACCAAATAATGTTGCAACATACTCAAAGGCAGAGCCATT--TTG
i canFam3.chr16            I 1 C 0
s odoRosDiv1.KB229312         743630 75 -   2017862 TTATAAAA---------------------AATTATA-----GCAA-AAAAATTTATGGATCACTAAATAATGTTGCAACACACT-AAATGTAGAGCCAGT--TTG
i odoRosDiv1.KB229312      I 1 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chrUn_GL344195       44418 8752 +     59083 T
e pseHum1.KB221293           1179931  0 -   1495300 I
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5               9605730  0 - 304825324 I
e taeGut2.chr1A             23692651 539 +  73657157 T
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=77069.000000
s hg38.chr8_KI270814v1_alt     65765 16 +    141812 TCTACTGTACCATTTT
s ponAbe2.chr8              59035611 16 + 153482349 TCTACTGTACCATTTT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48109018 16 + 100215132 TCTACTGTACCATTTT
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190749253 16 - 190850796 TCTACTATACCATCGT
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14112910 16 -  14256875 TCTACTATACCATTGT
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3011861 14 -  10937097 TCTACTGTACCATT--
i orcOrc1.KB316932         C 0 I 3
s panHod1.KE114653           1496606 16 -   2937107 TCTACTGCCCCATTAT
i panHod1.KE114653         C 0 I 217
s bosTau8.chr27             18212515 16 +  45407902 TCTACTGCACCATTAT
i bosTau8.chr27            C 0 I 230
s oviAri3.chr26             17838756 16 +  44077779 TCTACTGCCCCATTAT
i oviAri3.chr26            C 0 I 215
s capHir1.chr27             17924280 16 +  44118849 TCTACTGCCCCATTAT
i capHir1.chr27            C 0 I 213
s equCab2.chr27             18739866 14 -  39960074 TCTACTGTACCGTT--
i equCab2.chr27            C 0 C 0
s felCat8.chrB1             20468567 14 + 206538554 CCTACTATACCACC--
i felCat8.chrB1            C 0 C 0
s canFam3.chr16             18186982 14 -  59632846 TCTACTGGACCACC--
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         743705 14 -   2017862 TCTACTGGACCACT--
i odoRosDiv1.KB229312      C 0 C 0
s anoCar2.chr3             144851528 16 + 204416410 TCCACCATTCCATTTT
i anoCar2.chr3             n 8752 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e pseHum1.KB221293           1179931  0 -   1495300 I
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5               9605730  0 - 304825324 I
e taeGut2.chr1A             23692651 539 +  73657157 T
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=-60025.000000
s hg38.chr8_KI270814v1_alt     65781 30 +    141812 ---AGCTATCAGTCTATA----C--------ACAGTACTTTG-------------------------------------------------------------------------------------ATT
s ponAbe2.chr8              59035627 30 + 153482349 ---AGCTATCAGTCTGTA----C--------ACAGGACTTTG-------------------------------------------------------------------------------------ATT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48109034 30 + 100215132 ---AGCTATCAGTCTATA----C--------ACAGTACTTTG-------------------------------------------------------------------------------------ATT
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190749269 28 - 190850796 ---AAATATCAATCTAT--------------AAAATAGTTTT-------------------------------------------------------------------------------------ATT
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14112926 28 -  14256875 ---AAATATCAATCTAT--------------AAATTAGTTTT-------------------------------------------------------------------------------------ATC
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3011878 30 -  10937097 -------ATGGACCTATAGCAAC--------AAAACAGTTTG-------------------------------------------------------------------------------------ATT
i orcOrc1.KB316932         I 3 C 0
s panHod1.KE114653           1496839 85 -   2937107 -------atatatatgtataact--------gaggcactttgctgtacatcagaaatcaatacattgtaaatcaacta------------------------------ttttttcaattaaaaatTTATT
i panHod1.KE114653         I 217 I 21
s bosTau8.chr27             18212761 85 +  45407902 -------atatatatatatcact--------gaggcattttgctgtacatcagaaatcaatacattgtaaatcaactattttt------------tcaattaaaaaATT------------------ATT
i bosTau8.chr27            I 230 I 19
s oviAri3.chr26             17838987 85 +  44077779 -------atatatatgtataact--------gaggcactttgctgtacatcagaaatcaatacattgtaaatcaactattttttcaattaaaaaGTT------------------------------ATT
i oviAri3.chr26            I 215 I 21
s capHir1.chr27             17924509 85 +  44118849 -------atatatatgtataACT--------GAGGCACTTTGCTGTACATCAGAAATCAATACATTGTAAATCAACTATTTTTTCAATTAAAAAATT------------------------------ATT
i capHir1.chr27            I 213 I 21
s equCab2.chr27             18739880 33 -  39960074 ----GTCATGGACCTATTGCAAT--------AAAATAGTTTG-------------------------------------------------------------------------------------ATT
i equCab2.chr27            C 0 C 0
s felCat8.chrB1             20468581 33 + 206538554 ----ACCATAAACCTAGAGCAAC--------AAAATAGTTTG-------------------------------------------------------------------------------------ATt
i felCat8.chrB1            C 0 I 622
s canFam3.chr16             18186996 33 -  59632846 ----ATCACGGACCTATAGCAAC--------GAAACAGTTTT-------------------------------------------------------------------------------------ATT
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         743719 33 -   2017862 ----GTCATGGACCTATAGCAAC--------AAAATAGTTAG-------------------------------------------------------------------------------------ATT
i odoRosDiv1.KB229312      C 0 C 0
s anoCar2.chr3             144851544 44 + 204416410 ATGCATTAGAAGCCTAGTATAACTCAAGACACAAACACTTCC-------------------------------------------------------------------------------------TT-
i anoCar2.chr3             C 0 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e pseHum1.KB221293           1179931  0 -   1495300 I
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5               9605730  0 - 304825324 I
e taeGut2.chr1A             23692651 539 +  73657157 T
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=378889.000000
s hg38.chr8_KI270814v1_alt     65811 92 +    141812 AGAAATGCACAGTCACTCTCAAGTCAATAGCAGTTTATAAATACAGGACAAAAAGCCTGGCCTGGGCAGGCTG-AGCAATAATTGAGAGAACA
s ponAbe2.chr8              59035657 92 + 153482349 AGAAATGCACAGTCACTTTCAAGCCAATAGCAGTTTATAAATACAGGACAAAAAGCCTGGCCTGGGGAGGCTG-AGCAATAATTGAGAGAACA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48109064 92 + 100215132 AGAAATGCACAGTCACTCTCAGGCCAATAGCAGTTTATAAATACAGGACAAAAAGCCTGGCCTGGGGAAGCTG-AGCAATAATTGAGACAACA
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190749297 89 - 190850796 AGAAAGGCACAGTCACTCTCAAGCCAA-AGTAACTTATAAATATGGGGCAA--GGCCTGATGTGGGTAGGCTG-AAAAATAGTTGAGATAACA
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14112954 91 -  14256875 AGAAAGGCACAGTCACTCTCAAGCCAA-CGCAACTTATAAATACAGGGCAA-GGGCCTGATGTGGGTAGGCTGAAAAAATAATTGAGAGAACA
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3011908 90 -  10937097 AGAAATACACTGTCACTCTCAAGCCAACAGCAGTTCATAGATTCAAAACAAGGACCGTGATCCAGGGAGGCTA-AAAAATAATT--GAGAACA
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1496945 92 -   2937107 AATAATACACTGCCACTCTCAAGCCAACAGCAGTTTATAGATACAAGACAAGGAGCTTGGTCTAAGGAGGCTA-AAAAATAATTGAGAGAACA
i panHod1.KE114653         I 21 C 0
s bosTau8.chr27             18212865 92 +  45407902 AATAATACACTGCCACTCTCAAGCCAACAGCAGTTTATAGATACAAGACAAGGAGCTTGGTCTAAGGAAGCTA-AAAAATAATTGAGAGAACA
i bosTau8.chr27            I 19 C 0
s oviAri3.chr26             17839093 92 +  44077779 AATAATACACTGCCACTCTCAAGCCAACAGCAGTTTATAGATATAAGACAAGGAGCTTGGTCTAAGGAGGCTA-AAATATAATTGAGAGAACA
i oviAri3.chr26            I 21 C 0
s capHir1.chr27             17924615 92 +  44118849 AATAATACACTGCCACTCTCAAGCCAACAGCAGTTTATAGATACAAGACAAGGAGCTTGGTCTAAGGAGGCTA-AAAAATAATTGAGAGAACA
i capHir1.chr27            I 21 C 0
s equCab2.chr27             18739913 92 -  39960074 AGAAATACACTGTCACTCTCAAGCCAACAGCAGTTTATAGATACAGGGCAAGGAGCCTGGTCTTGGGAGGCTT-AAAAACAATAGAGAGAACA
i equCab2.chr27            C 0 C 0
s felCat8.chrB1             20469236 92 + 206538554 aGAAATACACTGTCACTCTCAAGCCAAAAGCATTTTGTAGATACAGAGCCAGGAGCCTGGTCTGGGGAGGCTG-AATAATAATTGAGAGGACA
i felCat8.chrB1            I 622 C 0
s canFam3.chr16             18187029 41 -  59632846 AGAAATACA--------------------------------------------------ATCTGG-GGGAAAG-AACAGTAATTGAGAGGACA
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         743752 42 -   2017862 AGAAATACA--------------------------------------------------ATCTGGTGAGACTG-AAAAATATTTGTGAGGATA
i odoRosDiv1.KB229312      C 0 C 0
s anoCar2.chr3             144851588 92 + 204416410 ATTAATAGAAGATAACACTTAACGTAACAACAGTTTATACATTTAATGGATCAAATCAGTTGTGACCAGCAGG-ATCAGAAATGTGCATAACA
i anoCar2.chr3             C 0 I 80
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e pseHum1.KB221293           1179931  0 -   1495300 I
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5               9605730  0 - 304825324 I
e taeGut2.chr1A             23692651 539 +  73657157 T
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=937407.000000
s hg38.chr8_KI270814v1_alt     65903 254 +    141812 AGTAGATATGAAGCTAACAAATAGCACTGTGAATCAGAAGTAGGGAGATAAGCCAGAGGCAGCACAAGTGGCAGGTCAAGACAGGTAGAT-AGA-CAGAAGCCAGGAGTG--------------------AGAGGTGAGATGTCCAAA-TTGCAATAAAATACTCAAGCACGAGTCAATCCACTGAAGCTTACACCAGGAGG--GGTAGCTGAGGGAAGGGCCGTTCAGGTAAAGTGAAAGGAATGAAGATGTG-AACAGGAGACAGG----AGGGTG------------------------------------------------------------------CAAGCT
s ponAbe2.chr8              59035749 254 + 153482349 AGTAGATATGAAGCTAACAAATAGCACTGTGAATCAGAAGTAGGGAGATAAGCCAGAGGCAGCACAAGTGGCAGGTCAAGACAGGTAGAT-AGA-CAGAAGCCAGGAGTG--------------------AGAGGTGAGATGTCCAAA-TTGCAATAAAATACTCAAGCATGAGTCAATCCACTGAAGCTTATACCAGGAGG--GGTAGCTGAGGGAAGGGCCATTCAGGTAGAGTGAAAGGAATGAAGATGTG-AACAGGAGACAGG----AGGGTG------------------------------------------------------------------CAAGCT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48109156 254 + 100215132 AGTAGATATGAAGCTAACAAATAGCACTGTGAATCAGAAGTAGGGAGATAAGCCAGAGGCAGCACAAGTGGCAGGTCAAGACAGGTAGAT-AGA-CAGAAGCCAGGAGTG--------------------AGAGGTGAGATGCCCAAA-TTGCAATAAAATACTCAAGCACGAGTCAATCCACTGAAGCTTACACCAGGAGG--GGTAGCTGAGGGAAGGGCCATTCAGGTAGAGTGAAAGGAATGAAGATGTG-AACAGGAGACAGG----AGGGTG------------------------------------------------------------------CAAGGT
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190749386 249 - 190850796 AGTACATATGAAGCTAACAAATAACACTGTCAACCAGAGTTAGGCAGATAAGCCAGAGGCAGCACAAGTGACAGGTCGAGACAGGTAGAC-AGA-CAAATGCCAGGAGTG--------------------AGAGGCAAGAAGTCCAAA-GTGCAATGAAACACTCAAGCACCAGTCAATCCGTGGAAATTTA-AGCAGGAAG--GGCGGCTGAAAGGAGGAGCATCCAGGCAGAGGGAAAGGAGTAGATGCATG-AGCAGGAGGCAGG----AGGGTG------------------------------------------------------------------C----T
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14113045 248 -  14256875 AGTAGATATGAAGCTAACAAATAACACTGTCAACCAGAATTAGGGAGATGAGCCAGAAGCAGCACAAGTGACAGGTCGAGACAGGTAGAC-AGA-CAAATGCCAGGAGTG--------------------AGAGGTGAG-AGTCCAAA-GTGCAATGAAACACTCAAGCACCAGTCAATCCGTGGAAACTTA-AGCAGGAAG--GGCAGCTGAAAGGAAGAGCATCCAAGTAGAGGGAAAGGAGTAGATGTGTG-AGCAGGAGGCAGG----AGGGAG------------------------------------------------------------------C----T
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3011998 263 -  10937097 AGTAGATATGAAGCTTACAAGTAACACAATCAACCAGAATCAGGCAGATAAGCCAGAGGCAGTACAAGTGGCAGGTGAAGCCAGGTAGGA-AGACCAAAAACCAGGAGTGTACAAATACCAGAGAACACAACAGATGGGAGGTCCACACAGTTGAGACACCAGTCAGGTACCAGTCAATCAACTGAAGTTTA-AACAAGAGGTAGGTAGCCGAGGG-------------GTAGAGGGAAAGGCATGGAGGTCTGCAACAGGAGACAGG----AGGGTG------------------------------------------------------------------CAGG--
i orcOrc1.KB316932         C 0 I 2
s panHod1.KE114653           1497037 238 -   2937107 AGTAGGTATGAAATTTGCAAGGAACATAATCAACCAGAATCAGGCAGATAAGCCAGAGACTGTACAAGTGGCGAACAAAGCCAGGTCGA-------AAAAGCCAGGAGTGGACAAATACCAGAACACACAACAGGTGGGGTGT------GTTCAATGAAAGAGTCAGTCACCAGCTAACCCATCGAAGTTTA-AACA---------------AGAG-------------GGAGAGGGAAAGGGGCGGAGGTCTGCAACAGAAGGCAGG----AGGGTG------------------------------------------------------------------CAAAAT
i panHod1.KE114653         C 0 I 2
s bosTau8.chr27             18212957 257 +  45407902 AGTAGATATGAAACTTGCAAGGAA----------CAGAATCAGGCAGATAAGCCAGAGACAGTACAAGTGGCAAACAAAGCCAGGTAGAA-AGA-CAAAACCCAGGAGTGGACAAATACCAGAACACACAAGAGGTGGGGTGTGCA-AAGTTCAATGAAACAGTCAGTCACCAGCTAACCCATCGAAGTTTA-AGCAAGAGGAAGGTAGCCGAGAG-------------GGAGAGGGAGAGGGCCGGAGGTCTGCAACAGAAGACGGGTGCAGGGGTG------------------------------------------------------------------GGGGAT
i bosTau8.chr27            C 0 I 2
s oviAri3.chr26             17839185 238 +  44077779 TGTAGGTATGAAATTTGCAAGGAACATAATCAACCAGAATCAGGCAGATAAGCCAGAGACTATACAAGTGGCGAACAAAGGCAGGTCGA-------AAAACCCAGGAGTGGACAAATACCAGAACACACAACAGGTGGGGTGT------GTTCAATGACAGAGTCAGTCACCAGCTAACCCATCGAAGCTTA-AACA---------------AGAG-------------GGAGAGGGAAAGGGGCGGAGGTCTGCAACAGAAGGCAGG----AGGGTG------------------------------------------------------------------CAAAAT
i oviAri3.chr26            C 0 I 2
s capHir1.chr27             17924707 243 +  44118849 AGTAGGTATGAAATTGGCAAGGAACATAATCAACCAGAATCAGGCAGATAAGCCAGAGACTATACAAGTGGTGAACAAAGGCAGGTCGAA-AGA-CAAAACCCAGGAGTGGACAAATACCAGAACACACAACAGGTGGGGTGT------GTTCAATGAAAGAGTCAGTCACCAGCTAACCCATCGAAGTTTA-AACA---------------AGAG-------------GGAGAGGGAAAGGGGCGGAGGTCTGCAACAGAAGGCAGG----AGGGTG------------------------------------------------------------------CAAAAT
i capHir1.chr27            C 0 I 2
s equCab2.chr27             18740005 240 -  39960074 AGTAGATATGGAATTTACAAGTAACACCGTCACCCAGAATCAGGCAGATAAGCTAGAGGCA---CAAGTGGCAGATCAAGCCAGA-AGAC-AGA-CAAAAACCAGGAGTGTATGAATACCAGAAATCATGAAAGGTGGGAGGTCCACA-GCTCAATGAAACAGTCAGACCCCAGTCAATT--TCAAAGGTTA-AACAAGGGG------------------------------gaggaaaaagcatggaagtctccaacaggagacagg----aggggg------------------------------------------------------------------caagat
i equCab2.chr27            C 0 C 0
s felCat8.chrB1             20469328 263 + 206538554 AGTAGATATGAAGCTTACAAACAACACAGCCAACCAGAATCAGGCAGGTAAGCCAGAGTCAGTACCAATGGCAGATCAAGCCAAGTAGAC-AAA-CAAAAGCCAGGAGTGTACAAATACCATAAAACACAACAGGTTTGGGGTCCAAA-GTTCAACAAAACAACCAGGCACCAGTCAATCAATTAAAGTTTA-AACAAGGGGAAGTTGGTCAGGAG-------------GTAGAGGAAAAGGCACAGAGGTCTGCAACAGGAAACAGG----CTGGTG------------------------------------------------------------------CAAGTT
i felCat8.chrB1            C 0 C 0
s canFam3.chr16             18187070 312 -  59632846 AGTAGATATGAAGCTTACAAGTAACACAGTTGATCAGAATCAGGCAGATAAGGCTGAGGCAGTATCAATGGCAGATTGAGGCTGGTGGGCAAAA-CAAAAACCAGGAGTGTACAAA-----------ACTTTA---TGGGGGTCCAAA-GTTTAATAAACCAGCCAGGCAC----CAATCAATTGAAGTTTA-AACAAGGGGCAGTTGGCCAAGGG-------------GTGGAGTAAAAACCATGGAGGTCTGCAACAGGAAACAGG----CTGGTGATggggcggctgcatggctcagtcagttaagcatctgcctttggctcaggtcatgatcccaggtcccaagat
i canFam3.chr16            C 0 I 138
s odoRosDiv1.KB229312         743794 262 -   2017862 AGTAGATATGAAGCTTATAAGTAACACAGTCAACCAGAATCTGGCTGATAAGCCTGAGGCAGTCCCAATGGCAA--CAAGGCAGGTAGGCAAAA-CAAAAATCAGGAGTGTACAAATACCAGAAAACACAATAGGTTGGGGGGCCAAA-GTTCTACAAAACAGCCAGGTACCAGTCAGTCAACCGAAGTTTA-AACAAGGGGGAGTTGGCCAAAGG-------------GTAGAGAGAAAGGCATGAAGGTCTGCAACAGGAAACAGG----CTGGTG------------------------------------------------------------------CAAGTT
i odoRosDiv1.KB229312      C 0 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chr3             144851680  80 + 204416410 I
e pseHum1.KB221293           1179931   0 -   1495300 I
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5               9605730   0 - 304825324 I
e taeGut2.chr1A             23692651 539 +  73657157 T
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=326143.000000
s hg38.chr8_KI270814v1_alt     66157 81 +    141812 ATTTGATATATTAGGAGAG-GAGGTACTTTTTTGAGGCT-AAGAAAATAACTTGTAGTCAGAATTTGAAGGACTATTTAGA-CC
s ponAbe2.chr8              59036003 82 + 153482349 ATTTGATATATTAGGAGAGTGAGGTACTTTTTTGAGGCT-AAGAAAATAACTTGTAGTCAGAATCTGAAGGACTATTTAGA-CC
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48109410 82 + 100215132 ATTTGATATATTAGGAGAGTGAGGTACTTTTTTGAGGCT-AAGAAAATAACTTGTAGTCAGAGTCTGAAGGACTATTTAGA-CC
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190749635 82 - 190850796 CTTTGATAAGTTTGGAGAGTGAGGTGCTTTTCTGAGGCT-GAGAAAATAACTGGAATACAGAATCTGGAGGACCGTGTAGA-CC
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14113293 82 -  14256875 CTTTGATATGTTTGGAGAGTGAGGTGCTTTTGTGAGGCT-GAGAAAATAACTGGAATACAGAATCTGGAGGACCGTGTAGA-CC
i saiBol1.JH378165         C 0 I 200
s orcOrc1.KB316932           3012263 70 -  10937097 ATTTGATTACTTTggagaatgaggtgtt------------gagaaaataagtggaagccagaacatggaagactatctaaa-c-
i orcOrc1.KB316932         I 2 C 0
s panHod1.KE114653           1497277 70 -   2937107 ACTTGATTACTTTGCAGAATGAGAGGCT------------CAGAAAATAACTGAGAGCCAGAACTTGGAAGACCATCTAAA-C-
i panHod1.KE114653         I 2 C 0
s bosTau8.chr27             18213216 70 +  45407902 ACTTGATTACTTTGCAGAATGAGAGGCT------------CAGAAAATAACTGAGAGCCAGAGCTCGGAAGACTATCTAAA-C-
i bosTau8.chr27            I 2 C 0
s oviAri3.chr26             17839425 70 +  44077779 ACTTGATTACTTTGCAGAATGAGAGGCT------------CAGAAAATAACTGAGAGCCAGAACTCGGAAGACCGTCTAAA-C-
i oviAri3.chr26            I 2 C 0
s capHir1.chr27             17924952 70 +  44118849 ACTTGATTACTTTGCAGAATGAGAGGCT------------CAGAAAATAACTGACAGCCAGAACTCGGAAGACCATCTAAA-C-
i capHir1.chr27            I 2 C 0
s equCab2.chr27             18740245 82 -  39960074 atttgattagtttggagagcgaggtgcttttctgagact-gagaaaaaaattgggagccagaccatggaggaccctctagatt-
i equCab2.chr27            C 0 C 0
s felCat8.chrB1             20469591 82 + 206538554 ATTTGATTAGTTTGGAGAGTAAGGTGCTTTTCTGACGCT-AAGAAAATAATTGGGAGCCTAAACATGGAGGACTATCTAGATC-
i felCat8.chrB1            C 0 C 0
s canFam3.chr16             18187520 83 -  59632846 ATTTGATTAGTTTGGAGAGTAAGGTGCTTTTCTGAGGCTGAAAAAAACAATTAGGAGCCAGAACACGGGGGACCATCTGGACC-
i canFam3.chr16            I 138 C 0
s odoRosDiv1.KB229312         744056 82 -   2017862 ATTTGATTAGTTTGGAGAGTAAGGTGCTTTTCTGAGACT-AAGAAAATAATTGGGAGCCAGAACATGGAGGACTATCTATACC-
i odoRosDiv1.KB229312      C 0 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chr3             144851680 80 + 204416410 I
e pseHum1.KB221293           1179931  0 -   1495300 I
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5               9605730  0 - 304825324 I
e taeGut2.chr1A             23692651 539 +  73657157 T
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=81590.000000
s hg38.chr8_KI270814v1_alt     66238 22 +    141812 ATGTTAAACAGCGAG----------CAGTTGA
s ponAbe2.chr8              59036085 22 + 153482349 ATGTTAAACAGTGAG----------CAGTTGA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48109492 22 + 100215132 ATGTTAAACAGCGAG----------CAGTTGA
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190749717 22 - 190850796 ATGTGAAACAGCAAG----------CACTTGA
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14113575 22 -  14256875 ATGTTAAACAGCAAG----------CACCTGA
i saiBol1.JH378165         I 200 C 0
s orcOrc1.KB316932           3012333 32 -  10937097 atattaaggagttggcgcttgattctgtatgt
i orcOrc1.KB316932         C 0 I 20
s panHod1.KE114653           1497347 22 -   2937107 ATATTAAAGAGTTGG----------TGTTCAT
i panHod1.KE114653         C 0 I 20
s bosTau8.chr27             18213286 22 +  45407902 ATATTAAACAGCTGG----------TGTTCAT
i bosTau8.chr27            C 0 I 20
s oviAri3.chr26             17839495 22 +  44077779 ATATTAAAGAGCTGG----------TGTTCAT
i oviAri3.chr26            C 0 I 20
s capHir1.chr27             17925022 22 +  44118849 ATATTAAAGAGCTGG----------TGTTCAT
i capHir1.chr27            C 0 I 20
s equCab2.chr27             18740327 22 -  39960074 atattaaagagttag----------cacttga
i equCab2.chr27            C 0 C 0
s felCat8.chrB1             20469673 22 + 206538554 ATATTAAAAAGTTAG----------CACTTga
i felCat8.chrB1            C 0 I 394
s canFam3.chr16             18187603 22 -  59632846 ATACTAAAGAGTCAG----------CACTTGG
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         744138 22 -   2017862 ATATTAAAGACTCAG----------CACTTGA
i odoRosDiv1.KB229312      C 0 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chr3             144851680 80 + 204416410 I
e pseHum1.KB221293           1179931  0 -   1495300 I
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5               9605730  0 - 304825324 I
e taeGut2.chr1A             23692651 539 +  73657157 T
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=35502.000000
s hg38.chr8_KI270814v1_alt     66260 9 +    141812 TTCTACATG
s ponAbe2.chr8              59036107 9 + 153482349 TTCTGCATG
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48109514 9 + 100215132 TTCTGCATG
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190749739 9 - 190850796 TTCTGCCTG
i calJac3.chr3             C 0 I 147
s saiBol1.JH378165          14113597 9 -  14256875 TTCTGCACG
i saiBol1.JH378165         C 0 I 143
s orcOrc1.KB316932           3012385 9 -  10937097 ttcttagtg
i orcOrc1.KB316932         I 20 I 61
s panHod1.KE114653           1497389 9 -   2937107 TTCTTCGTG
i panHod1.KE114653         I 20 I 63
s bosTau8.chr27             18213328 9 +  45407902 TTCTTTGTG
i bosTau8.chr27            I 20 I 67
s oviAri3.chr26             17839537 9 +  44077779 TTCTTCGTG
i oviAri3.chr26            I 20 I 66
s capHir1.chr27             17925064 9 +  44118849 TTCTTCGTG
i capHir1.chr27            I 20 I 66
s equCab2.chr27             18740349 9 -  39960074 ttttgtaag
i equCab2.chr27            C 0 I 101
s canFam3.chr16             18187625 9 -  59632846 TTGTGTATG
i canFam3.chr16            C 0 I 110
s odoRosDiv1.KB229312         744160 9 -   2017862 TTCTGTATG
i odoRosDiv1.KB229312      C 0 I 111
e felCat8.chrB1             20469695 394 + 206538554 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chr3             144851680 80 + 204416410 I
e pseHum1.KB221293           1179931 0 -   1495300 I
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5               9605730 0 - 304825324 I
e taeGut2.chr1A             23692651 539 +  73657157 T
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=41769.000000
s hg38.chr8_KI270814v1_alt     66269 21 +    141812 AGAATTCTTAAGAGAAGATTT
s ponAbe2.chr8              59036116 21 + 153482349 AGAATTCTTAAGAGAAGATTT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48109523 21 + 100215132 AGAATTCTTAAGAGAAGATTT
i nomLeu3.chr16            C 0 C 0
s orcOrc1.KB316932           3012455  9 -  10937097 GGAATTTCT------------
i orcOrc1.KB316932         I 61 I 48
s panHod1.KE114653           1497461 21 -   2937107 GGAATCTCTTACAATAAATGA
i panHod1.KE114653         I 63 I 39
s bosTau8.chr27             18213404 21 +  45407902 GGAATCTCTTACAATAAACGA
i bosTau8.chr27            I 67 I 39
s oviAri3.chr26             17839612 21 +  44077779 GGAATCTCTTACAATAAATGA
i oviAri3.chr26            I 66 I 39
s capHir1.chr27             17925139 21 +  44118849 GGAATCTCTTACAATAAATGA
i capHir1.chr27            I 66 I 39
s equCab2.chr27             18740459 21 -  39960074 ggaatctcttacaataaatga
i equCab2.chr27            I 101 I 40
s canFam3.chr16             18187744 21 -  59632846 AGGATCCCTCACAAGAAATAA
i canFam3.chr16            I 110 I 17
s odoRosDiv1.KB229312         744280 21 -   2017862 GGAATTCCTTACAAGAAATGA
i odoRosDiv1.KB229312      I 111 I 17
e felCat8.chrB1             20469695 394 + 206538554 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chr3             144851680 80 + 204416410 I
e pseHum1.KB221293           1179931  0 -   1495300 I
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e calJac3.chr3             190749748 147 - 190850796 I
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5               9605730  0 - 304825324 I
e taeGut2.chr1A             23692651 539 +  73657157 T
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e saiBol1.JH378165          14113606 143 -  14256875 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=6801.000000
s hg38.chr8_KI270814v1_alt     66290 2 +    141812 AA
s ponAbe2.chr8              59036137 2 + 153482349 GA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48109544 2 + 100215132 AA
i nomLeu3.chr16            C 0 C 0
s orcOrc1.KB316932           3012512 2 -  10937097 AA
i orcOrc1.KB316932         I 48 C 0
s panHod1.KE114653           1497521 2 -   2937107 AA
i panHod1.KE114653         I 39 C 0
s bosTau8.chr27             18213464 2 +  45407902 AA
i bosTau8.chr27            I 39 C 0
s oviAri3.chr26             17839672 2 +  44077779 AA
i oviAri3.chr26            I 39 C 0
s capHir1.chr27             17925199 2 +  44118849 AA
i capHir1.chr27            I 39 C 0
s equCab2.chr27             18740520 2 -  39960074 aa
i equCab2.chr27            I 40 C 0
s felCat8.chrB1             20470089 2 + 206538554 AA
i felCat8.chrB1            I 394 C 0
s canFam3.chr16             18187782 2 -  59632846 CA
i canFam3.chr16            I 17 C 0
s odoRosDiv1.KB229312         744318 2 -   2017862 CA
i odoRosDiv1.KB229312      I 17 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chr3             144851680 80 + 204416410 I
e pseHum1.KB221293           1179931 0 -   1495300 I
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e calJac3.chr3             190749748 147 - 190850796 I
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5               9605730 0 - 304825324 I
e taeGut2.chr1A             23692651 539 +  73657157 T
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e saiBol1.JH378165          14113606 143 -  14256875 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=1178763.000000
s hg38.chr8_KI270814v1_alt     66292 260 +    141812 GAAGACTTA-----------------------AGAGACTTC-AGAAGACAGGCTCCGCAGGACCTGGATGAG-----------------------GGGGTGT-GAGATACTCACAGTATTTTAACCCAAAAT-------TAAGGATATTAGAAGCTACAGGAATAAAAGAAACAGTCCCA-GGGCTG--------TGGGTAGGAGGATTAATGGGGTTCCATTTTAGACA---GGAAGAGG-AAAAAAATTTGGTAATTCATTTTGATTGAGCAAGC-----------------------------A-A--AAAAAATTGAAGCTGAGCATTATGGAAGTAACAACAATGTTTTGTGATG
s ponAbe2.chr8              59036139 259 + 153482349 GAAGACTTA-----------------------AGAGACTTC-AGAAGACAGGCT-CGCAGGACCTAGATGAG-----------------------GGGGTGT-GAGATACTCGCAGTCTTTTAACCCAAAAT-------TAAGGACATTAGAAACTACAGGAATAAAAGAAACAGTCCCA-GGGCTG--------TGGGTAGGAGGATGAATGGGGTTCCATTTTAGACA---GGAAGAGG-AAAAAAATTTGGTAATTCATTTTGATTGATCAAGC-----------------------------A-A--AAAAAATTGAAGCTGAGCCTTATGGAAGTAACAACAATGTTTTGTGATG
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48109546 261 + 100215132 GAAGACTTA-----------------------AGAGACTTC-AGAAGACAGGCTCCGCAGGACCTGGATGAG-----------------------GGGGTGT-GAGATACTCACAGTCTTTTAACCCAAAAT-------TAAGGATATTAGAAACTACAGGAATAAAAGAAACCGTCCCA-GGGCTG--------TGGGTAGGAGGATGAATGGGGTTCCATTTTAGACA---GGAAGAGGAAAAAAAATTTGGTAATTCATTTTGATTGATCAAGC-----------------------------A-A--AAAAAATTGAAGCTGAGCATTACGGAAGTAACAACAATGTTTTGTGATG
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190749895 260 - 190850796 GAAGACTGA-----------------------AGACACTTT-AGAACGCAGGCTCCACAGGATCTGAGTGAA-----------------------GGGGTTT-GGGAGACTCACAGCTTTCTACAGTGAAAT-------CAAGGATATCAGAAACTATCGGAATAAAAGAAACAGTCCTA-GGGCTG--------GGGGTGGGAGGATGAATGGGGTTCCATTTTAGACA---GGAGAAGG-AGTAAATTCAGGTAATTCATTTTGATTGATCAAGC-----------------------------A-A--AAGAATTGGCAGCTGAACATTATGGAAGTGACAACAAGGTTTTATGAGG
i calJac3.chr3             I 147 C 0
s saiBol1.JH378165          14113749 260 -  14256875 GAAGACTGA-----------------------AGACACTTT-AGAAGGCAGGCTCCACAGCACCTAAGTGAA-----------------------AGGGTGT-GGGAGACTCACAGTTTTCTATAGTGAAAT-------CAAGGATATCAGAAACTATTGGAATAAAAGAAACAGTCCTA-GGGCTG--------GGGGTAGGAGGATGAATGGGGTTCCATTTTGGACA---GGAGAAGG-AGAAAATTCAGGTAATTCATTTTAATTGATCAAGC-----------------------------A-A--AAAAATTTGAAGCTGAACATTACAGAAGTGACAACAATGTTTTATGAGG
i saiBol1.JH378165         I 143 C 0
s orcOrc1.KB316932           3012514 300 -  10937097 GTGGAC--A-----------------------AGAGATTTTTAGAAGGCAAAATAAACAGAAACTAGAAGGGGGA---ATATAGGAGGGGGT---GGAGGGTAAGGAGACTCACAGCTTTCTGACCTGAACA----AGGTGGAAATAATAGGGACTACAGGAGTAAAAGAAATAGTCCCAGGGGTTGGGGGCGGTGGGGTAGAAGGATATATTAGGTTCCATTTTGAACAGGAGGAGGAGG-AGAAAATTCAAGTAATTCATTTTGATTGTTTAAGC-----------------------CAAAAAA-AAGAAAAAATTGAAGCTAAACATTATAGAAGTGTCAAGAATGTTTTATGATG
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1497523 291 -   2937107 GTGGACGTA-----------------------AGCGATTTCTAGAAGGCAGAATAAACAGAAACTAGAAGGGAGA---ACACAGGAGGGGGT---GGGGTGTAAGGAGACTTACAACTTTCCAACCTGAACA----AGGCAGAAATAATAGAGACTACAGAAGTAAAAGGAACGGTCCCA-GGGTTG--------GGAGTAGAAGGATAAATTGGGTTCCATTTTGTATAGGAGGAGGAGG-AGAACATTCAAGTAATTCATTTTGATTGTTTAATC-----------------------CAAGAAA-A--AAATAATTGAAGCTAAACATTATAGAAGTGTCAAGAATGTTTTATGATG
i panHod1.KE114653         C 0 C 0
s bosTau8.chr27             18213466 292 +  45407902 GTGGATGTA-----------------------AGAGATTTCTAGAAGGCAGAATAAACAGAAACTAGAAGGGAGA---ATACAGGAGGGGGT---GGGGTGTAAGAAGACTTACAACTTTCCAACCTGAACA----AGGTGGAAATAATAGAGACTACAGAAGTAAAAGGAATGGTCCCAGGGGTTG--------GGAATAGAAGGATAAATTAGGTTCCATTTTGTACAGGAGAAGGAGG-AGAAAATTCAAGTAATTCATTTTGATTGTTTAAGC-----------------------CAAGAAA-A--AAAAAATTGAAGTTAAAGATTATAGAAGTGTCAAGAATGTTTTATGATG
i bosTau8.chr27            C 0 C 0
s oviAri3.chr26             17839674 291 +  44077779 GTGGATGTA-----------------------AGCGATTTCTAGAAGGCAGAATAAACAGAAACTAGAAGGGAGA---ACACAGGAGGGGGT---GGGGTGTAAGGAGACTTACAACTTTCCAACCTGAACA----AGGTGGAAATAATAGAGACTACAGAAGTAAAAGGAACGGTCCCA-GGGTTG--------GGAGTAGAAGGATGAATTAGGTTCCATTTTGTACAGGAGGAGGAGG-AGAACATTCAAGTAATTCATTTTGATTGTTTAAGC-----------------------CAAGAAA-A--AAATAATTGAAGCTAAACATTATAGAAGTGTCAAGAATGTTTTATGATG
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17925201 291 +  44118849 GTGGACGTA-----------------------AGCGATTTCTAGAAGGCAGAAGAAACAGAAACTAGAAGGGAGA---ACACAGGAGGGGGT---GGGGTGTAAGGAGACTTACAACTTTCCAACCTGAACA----AGGCAGAAATAATAGAGACTACAGAAGTAAAAGGAACGGTCCCA-GGGTTG--------GGAGTAGAAGGATACATTAGGTTCCATTTTGTACAGGAGGAGGAGG-AGAACATTCAAGTAATTCATTTTGATTGTTTAAGC-----------------------CAAGAAA-A--AAATAATTGAAGCTAAACATTATAGAAGTGTCAAGAATGTTTTATGATG
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18740522 277 -  39960074 gtagactta-----------------------agagatttttagagggcagaataaacagaaactagacggggga---acatggcagggggttggggagggt-gggagactcaccgttttctgagctgaaca-tcaaggtagaaataatagggactgcaggaataaaagaaa------caagggtag--------g-------aggatgaactgggttccattttggaca---GGAGGAGG-AGAAAATTCAGATAATTAATTTTGATTGTTTAAGC---------------------------AAA-A--AGAAAATTGAAACTGAAGATCATAGAAGTGCCAAGAATGTTTTATCAGG
i equCab2.chr27            C 0 C 0
s felCat8.chrB1             20470091 321 + 206538554 GTAGCCTTA-----------------------AGAGAATTTTAGAAGGTGGAATAAACAGGAACTAGAAGGGAGAGATACAGGAGAGGAGAT---GGAGAAC-AGGAGACTTACAGCTTTCTGACCTGAAAA-TCAAGGTGGAAATAGTAGGGACTATAGGGATAAAAGAAACTCTCTCAGGGGTGG--------GAGGAAGAAGGATGAATTGAGTTCCATTTTGGACAGACGGAGGAGG-AGAAAATTCTGGTAATACATTTTGATTGTTTATacacacacacacacacaaagaaagaaagaaaagg--gaaaaaatgaaGCTGAACATTATAGAAGTGACAAGAATATTTTATAATG
i felCat8.chrB1            C 0 C 0
s canFam3.chr16             18187784 326 -  59632846 ATGGCCATGGACAGGGAAAGAGAGCAGATTGAAGGGATTCACAGGAGGCAAAATAAACAGAAAGCAGAAGGGAGAGACACAAGAGGGGAGAC---ATAAGG--GGAGGACTCACAGGTTTTTGATCTGAACA-TCAGGATGGAAATAATAGGGGCTACGAGAATAAAAGAAACAGTCCCAGGGGTGG--------GAGGTAAAAAGATGAATTGCGTTCCATTTCACACAGGAGGAGGAGG-AGAAAATTCTGGTTATTCACT-TGATTGTTTAAGC---------------AAAAAAGAATGGAGA-G--GAAAAAATGAAGCTGAGCATTTTAGAAGCGACAAGACTATTTTATAATG
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         744320 294 -   2017862 GTAGACTTA---------------------------------AAAAGGCAGAACAAACAGAAACTAGAAGGGAGAGACACAGGAGGGGAGAT---GGAAGGT-AGGAGACTCATAGCTTTCTGACCTGAACATTCAAGGTAGAAATAATAGGGGCTACAAGAGTAAAAGAACTAGTCCCAGGGATGA--------GGGGT---AGGATGAATTGAGTTCCATTTTGCACAGAAGGAGGGGG-AGAAAATTCTGGTAATTCATTCTGATTGTTTAAGC--------------AAAAAAAGAAAGGAAA-G--AAAAAAATGAAGCTGAACATTATCGAAGTGACAAGAGTATTTTACAATG
i odoRosDiv1.KB229312      C 0 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chr3             144851680  80 + 204416410 I
e pseHum1.KB221293           1179931   0 -   1495300 I
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737798             79979 829 +    106177 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5               9605730   0 - 304825324 I
e taeGut2.chr1A             23692651 539 +  73657157 T
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=130448.000000
s hg38.chr8_KI270814v1_alt     66552 25 +    141812 TTGAG--ATAGAAAACAGGCCCAAGAG
s ponAbe2.chr8              59036398 25 + 153482349 TTGAG--ATAGAAAACAGGCCCAAGAG
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48109807 25 + 100215132 TTGAG--ATAGAAAACAGGCCCAAGAG
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190750155 27 - 190850796 TCAACTTACAGGAAACAGGCCCGAGAA
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14114009 26 -  14256875 TCGAGTTACAGG-AACAGGCCCAAGAA
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3012814 27 -  10937097 TTGAAGTATAGAAAGCAGGCCCAAGAA
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1497814 27 -   2937107 TTGAGACACAGAAAGCAGGTCCAAGAA
i panHod1.KE114653         C 0 C 0
s bosTau8.chr27             18213758 27 +  45407902 TTGAGACACAGAAAGCAGGTCCAAGAA
i bosTau8.chr27            C 0 C 0
s oviAri3.chr26             17839965 27 +  44077779 TTGAGACACAGAAAGCAGGTCCAAGAA
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17925492 27 +  44118849 TTGAGACACAGAAAGCAGGTCCAAGAA
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18740799 13 -  39960074 TCGAGGTATAAAA--------------
i equCab2.chr27            C 0 C 0
s felCat8.chrB1             20470412 27 + 206538554 TTGAGATATAGAAAACAGGCCCAAGAA
i felCat8.chrB1            C 0 I 188
s canFam3.chr16             18188110 27 -  59632846 TTGACATATAGAAAACAGGCCCAAGAA
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         744614 27 -   2017862 TTGACGTATAGAAAACAGGCCCAAGAA
i odoRosDiv1.KB229312      C 0 C 0
s allMis1.JH737334             56469 25 -    565068 TTGGA--GTCTAAATTAGGTCCCAGAA
i allMis1.JH737334         n 829 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chr3             144851680 80 + 204416410 I
e pseHum1.KB221293           1179931  0 -   1495300 I
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5               9605730  0 - 304825324 I
e taeGut2.chr1A             23692651 539 +  73657157 T
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=1578766.000000
s hg38.chr8_KI270814v1_alt     66577 374 +    141812 ------AGCCAAATATTTTACA--TTTCCCTTCTGGTTAGA--TAAATAATAAGAAT-CTTCCTGTTAAGGTTTATGAAATCCCATTGTTTCAA------TTAATCAAAAGGAGAGAG-------------GATCAATTTAAACT----TTATAAAGTAC--A-------------------------------------------------AGAAAATCAGT-TGTCTCTTTAGAAAAAGTG--------AGTCAGTATTTCCT--GTGGTCTCAAATCATCC--TAAAATAATGGTCTATGAGACAAATGAGA--------ATCCGCTTACTTATCTAGCTTTGTCTTTGATAGATTAAAAGTCTGTA-CAAAA--TCTTGC-----------------TATATCACAAA---GACACTAATGTGCCCAACTGTATATAAAATATATAATTCACAGTATA-TAAAAATATACATCAAGAAATTTT--AAAAAACA----TTGTATTCT
s ponAbe2.chr8              59036423 374 + 153482349 ------AGCCAAATATTTTACA--TTTCCCTTCTGGTTAGA--TAAATAATAAGAAT-CTTTCTGTTAAGGTTTATGAAAACCCATTGTTTCAA------TTAATCAAAAGGAGAAAG-------------AATCAATTTAAACT----T--TAAAGTAC--A-------------------------------------------------AGAAAATCAGT-TGCCTCTTTAGAAAAAGTG--------AGTCAGTATTTCCT--GTGGTCTCAAATCATCC--TAAAATAATGGTCTATGAGACAAATGAGA--------CTCTGCTTACTTATCTAGCTTTGTCTTTGATAGATTAAAAATCTGTA-CAAAA--TCTTGC-----------------TATATCACAAA---GACACTAATGTGCCCAATTGTATATAAAATATATAATTCACAGTATA-TAAAAATATACATCAAGAAATTTTTAAAAAAACA----TTGTATTCT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48109832 373 + 100215132 ------AGCCAAATATTTTACA--TTCCTCTTCTGGTTAGA--TAAATAATAAGAAT-CTTTCTGTTAAGATTTATGAAAACCCATTGTTTCAA------TTAATCAAAAGGAGAGAG-------------GATCAATTTAAACT----T--TAAAGTAC--A-------------------------------------------------AGAAAATCAGC-TGTCTCTTTAGAAAAAGTG--------AGTCAGTATTTCCT--GTGGTCGCAAATCATCC--TAAAATAATGGTCTGTGAGACAAATGAGA--------CTCCGCTTACTTATATAGCTTTGTCTTTGATAGATTAAAAATCTGTA-CAAAA--TCTTGC-----------------TATATCACAAA---GACACTAATGTGCCCAACTGTATATAAAATATATAATTCACAGTATA-TAAAAATATACATCAAGAAATTTT-AAAAAAGCA----TTGTATTCT
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190750182 355 - 190850796 ------ACCACAGTATGTCCTG--TTTCTTTTCTGATTACA--TAAATAATAAGGATATTTTCTGTTAAGTTTTTTGATAACCTGTTGT-----------TTAATCAGAAGGAGACAA-------------GATGAATTTGAACT----T--AAAAGTAT--A-------------------------------------------------AGAAAATCAGT-------ATAAGAAAAGGTG--------AGTCTGTATTTCTT--ATGGTCTTAAATCATCC-TTCAAAGAATGGGCTATGAGAAAAATGAGA--------TCCTACTTATTTATCTAGCCTTTTCCTTGATAGATTAAAAA-CTATATCAAAA--TCTTAC-----------------TATATTGCAAA---GACGCTGATACACTCAAGTG------------AGAATCCACAGTATA-CAAACATATAAATCAAGGGAATTT--AAAAAACAATCACTGTTTTCA
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14114035 355 -  14256875 ------AACACAGTATGTCCTG--TTTCTTTTCTGATTAAA--TAAATAATAAGGATATTTTCTGTTAAGTTTTTTGAAAACCTGTTAT-----------TTAATCAAAAGGAGACAA-------------GATAAATTTGAACT----T--GAAAGTAT--A-------------------------------------------------AGAAAAGCAGT-------ATAAGAAAAGGTG--------AGTCTGTATTTCTT--ATGGTCTTAAATCATCC-TTCAAATAATGGGCTATGAGAAAAATGAGA--------TCCTACTTATTTATCTAGCCTTTTCCTTGATAGATTAAAAA-CTATATCAAAA--TCTTAC-----------------TATATTGCAAA---GACACTAATACATTCAACTG------------AGAATCCACAGTATA-TAAACATATAAATCAAGGTAATTT--AAAAAACAATCTTTGTGTTCA
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3012841 365 -  10937097 ------AGCAAAACATTTCACG--TTTCTCTTCTGGT--AAAAAAAAGAAGAAGAAT-TTTTCTGTTAAGGTTTATGATAACATATTGTTTCAA------TTAATCAAAGGTAGGCAG-------------CATGAATTTGGATAAAACT--AAAAATAC--A-------------------------------------------------AAAAAATTAGT-TGCCTCTCTGGAAAAGGTA--------AGTCAGTATTTCCT--ATGGTCTTAAATCATCCTTCAAAATGATGGG-------ACAAATGTGA--------TCCTATTTATTTATCTAGCCTTCTCCTTGATAAATTAAAAATTTATA-CAAAAA-TCTTAA-----------------TACATCTCAAG---GACACTAATACACTCCATTG------------CTAATCTACACTACACTAAAAGTATAAATCAAGGGAATTT--AAAAACCAGACATGGTGTTCT
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1497841 368 -   2937107 ------AGCAAGGCATTTCACA--TTTCTCTTCTGGTTAAAACAGAAGAAGAAGAAT-TTTTCTGTTAAGGTTTATGATAACATACTGTTTCAA------TTAATCAAAGGTAGGCAG-------------GATAAATTTGGCTATAAGT--AAAAATAC-AA-------------------------------------------------AAAAAATTAGT-TGCCTCTCTGGAAAAGGTA--------AGTCAGCGTTTCCT--ATGGTCTTAAATCGTTCTTCAGAATGATGGG-------ACAATTGTGA--------TCCTATTTATTTACCTAGCCTTTTCCTTGATAGATTAAAGATTTATA-CAAAAA-TATTAC-----------------TACATCTCAAG---GACAATAATACACTCCATTG------------CTAATCTACACAATGCTAAAAGTATAAATCAAGGGAATTT--AAAAACCAGACACAGTGTTCT
i panHod1.KE114653         C 0 C 0
s bosTau8.chr27             18213785 363 +  45407902 ------AGCAAAACATTTCACA--TTTCTCTTCTGGTTAAAACAGAAGAAGAATAAT-TTTTCTGTTAAGGTTTATGATAACATACTGTTTCAA------TCAATCAAAGGTAGGCAG-------------GATAAATTTGGCTATAAGT--AAAAATAC--A-------------------------------------------------AAAAAATTAGT-TGCCTCTCTGGAAAAGGTA--------AGTCAGTATTTCCT--ATGGTCTTAAATCGTTCTTCAAAATGATGGG-------ACAATTGTGA--------TCC----TATTTACCTAGCCTTCTCCTTGATAGATTAAAGATTTATA-CAAAAA-TATTAC-----------------TACATCTCAAG---GACAATAATACACTCCATTG------------CTAATCTACACAATGCTAAAAGTATAAATCAAGGGAATTT--GAAAACCAGACACAGTGTTCT
i bosTau8.chr27            C 0 C 0
s oviAri3.chr26             17839992 368 +  44077779 ------AGCAAGGCATTTCACA--TTTCTCTTCTGGTTAAAACAGAAGAAGAAGAAT-TTTTCTGTTAAGGTTTATGATAACATACTGTTTCAA------TTAATCAAAGGTAGGCAG-------------GATAAATTTGACTCTAAGT--AAAAATACAAA-------------------------------------------------AAAAAATTAGT-TGCCTCTCTGGAAAAGGTA--------AGTCAGTATTTCCT--ATGGTCTTAAATCGTTCTTCAAAATGATGGG-------ACAATTGTGA--------TCCTATTTATTTACCTAGTCTTTTCCTTGATAGATTAAAGATTTATA-CAAAAA-TATTAC-----------------TACATCTCAAG---GACAATAATACACTCCATTG------------CTAATCTACACAATGCT-AAAGTATAAATCAAGGGAATTT--AAAAACCAGACACAGTGTTCT
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17925519 369 +  44118849 ------AGCAAGGCATTTCACA--TTTCTCTTCTGGTTAAAACAGAAGAAGAAGAAT-TTTCCTGTTAAGGTTTATGATAACATACTGTTTCAA------TTAATCAAAGGTAGGCAG-------------GATAAATTTGGCTCTAAGT--AAAAATACAAA-------------------------------------------------AAAAAATTAGT-TGCCTCTCTGGAAAAGGTA--------AGTCAGTATTTCCT--ATGGTCTTAAATCGTTCTTCAAAATGATGGG-------ACAATTGTGA--------TCTTATTTATTTACCTAGCCTTTTCCTTGATAGATTAGAGATTTATA-CAAAAA-TATTAC-----------------TACATCTCAAG---GACAATAATACACTCCATTG------------CTAATCTACACAATGCTAAAAGTATAAATCAAGGGAATTT--AAAAACCAGACACAGTGTTCT
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18740812 363 -  39960074 ------AGCAAAACATT---TG--TTTCTCTTCTGGTTCAAAAAGAAGAG---GGAT-TTTTCTGTTAAAGTTTGTGATAACCTATTGTTTCAA------TTAATCAAAGGTAGGCAG-------------GATGAATTTGGATT----T--AAAAGCAC-AA-------------------------------------------------A-AAAATTACT-TGCCTCTTTGGAAAAGGTG--------AGTCAGTACTTCCT--AAGGTTTTAAATCATCCTCCAAAATGATGAACTATGAGACAAATGCAA--------TCCTATTTATTTATCCAGCCTCTTCCTTGATAGATTAAAAATTTATA-CAAAA--TCTTAC-----------------TACATCGCAAA---GACTATAATACACTCAACTG------------CTAATTGCTAATATACTAAGAGTATAAATCAAGAGAATTT--AAAAACCAGCCATGGAGTTCT
i equCab2.chr27            C 0 C 0
s felCat8.chrB1             20470627 396 + 206538554 ------AGCAAAATATTTCATG--GTTCTCTTCTGGTTAACAAAAAAGA----GTAT-TTTTCTGTTAAAGTTTGTGATACCCTATTGTTTCAA------TTAAT-AAAGGTAGGCAG-------------GATGAATATGGATT----T--AAAAATAC-AA-------AAAAATTAAAAATTCAAAATAAATAAAAATACAA--------AAAAAATTAGT-TGCCTGTTTGGAAAAGGTG--------AGTCAGTATTTCCT--ATGTTCTTAAACCATCCTTCAAAATGATGGGCTATGACAGTAATGCAA--------TCCTATTTATTTACACAGACTTTTCCTTGATAGAGTAAAAATTTACA-CAAAA--TCT--------------------TACATCACAAA---GACACTAATACAGTCAATTG------------CTAATGTGCAGTATACTAAAAGTATAAATCAAGGGAATTT--TAAAACTGGTCACGGTGTTTT
i felCat8.chrB1            I 188 C 0
s canFam3.chr16             18188137 407 -  59632846 ------AGCAAGACATTTCATG--TTTCTCTTCCGGTTAACAAAAAAGAA-ATGTTC-TTTTCTGTTAGAGTCTGTGATAACCTATTGTTTCAA------TTAAT-AAAGCTAGGCAG-------------GATAAATATGGATC----T--AAAAACAC-AATATTGGaaaaaattgaaaa---gaagaagaaaaaaataaaaataaaaacacaaaaTTAGT-TGCCTCTTTGGAAAAGATG--------AATCAGTATTTCCT--ATGGTCTTAAATTATTCTTCAAAATGATGGGCTTTGAGACA-----AA--------TCCTATTCATTTATGTAGCC-TTTCCTTGATAGATTAAGAATTTACA-TAAAAATCTT--------------------TACATCGCAAA---GATACTAATACACTCAATTG------------GTAATCTGCAGTACACTGAAAGTATAAATCAAGGGAACTT--TAAAACTAGTCATGGTGTTCT
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         744641 365 -   2017862 ------AGCAAAACATTTCATG--TTTCTCTTCTGTTTAACAAAAAAGAA-ATTTTC-TTTTCTGTTAAAGTTTGTGGTAACCTATTGTTTCAA------TTAAT-AAAGGTAAGCAG-------------GATAAGTATGGATT----T--TAAAATAC-AA-------------------------------------------------ATAAAATTAGT-TGCCTCTTTGGAAAAGATG--------AGTCAGTATTTCCT--ATGGTCTTAAATCATCCCTTAAAATGGTGGGCTCTGAGACAAATGCAA--------TCCTATTTATTTATGTAGCCTTTTCCTTGATAGAGTAAAAATTTACA-CAAAA--TCT--------------------TACATCACAAA---GACACTAATACACTCTACTG------------CTAATCTGCAGTACACTAAATGTACAAATCAAGGGAATTT--TAAAACCAGTCATGCCCTTCT
i odoRosDiv1.KB229312      C 0 C 0
s allMis1.JH737334             56494 409 -    565068 TTCCATGGTGATGTCTTCTGTGAATTTCAGTGCTGAT-------GACCAATAAGTAT-TGTTTGGTCAA-------TATAACTGATTattccaagtccactgaaatcaagagagagagtcgcattgacttcaatggattttggat----c--aagcccAC----------------------------------------------------CACAAATTATTATTATTTTTTTAAAACAGTGAACATAGTAATAATTATCTGCTGAATAGCTTTTGATCATAT------ATATCTGGTTGGGCAAAAAGGGCAAATAATTATTCTTGATTATTAGAAGGATGATCTCTTTGAGTACATGATGGGCTCTA-ATAAT--TTTGGCGCTCTGATTTTGTAGTACACATCTATAATTTGGCAAACAAAAGTTCAGGCT------------AAAAATTGCAATTAA-AAAAAATATGATTGAAGAATTCCT--ATAAGACT----TTGCAGTCT
i allMis1.JH737334         C 0 I 4702
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chr3             144851680  80 + 204416410 I
e pseHum1.KB221293           1179931   0 -   1495300 I
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5               9605730   0 - 304825324 I
e taeGut2.chr1A             23692651 539 +  73657157 T
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=155742.000000
s hg38.chr8_KI270814v1_alt     66951 27 +    141812 AAAGGGAAAGATCATTTCAAATTGTTT
s ponAbe2.chr8              59036797 27 + 153482349 AAAGGGAAAGATCATTTCAAATTGTTT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48110205 27 + 100215132 AAAGGAAAAGATCATTTCAAGTTGTTT
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190750537 26 - 190850796 AAAGGGAAAGATTATTCCAAATT-TTT
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14114390 26 -  14256875 AAAGGGAAAGACTATTCCAAATT-TTT
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3013206 27 -  10937097 AAAGGGAAAGATTATTCCAAAATTCTT
i orcOrc1.KB316932         C 0 I 189
s panHod1.KE114653           1498209 27 -   2937107 AAAGACAAAGATTATTCCAAAATGCTT
i panHod1.KE114653         C 0 I 194
s bosTau8.chr27             18214148 27 +  45407902 AAAGGGAAAGATTATTCCAAAATGCTT
i bosTau8.chr27            C 0 I 194
s oviAri3.chr26             17840360 27 +  44077779 AAAGGCAAAGATTATTCCAAAATGCTT
i oviAri3.chr26            C 0 I 193
s capHir1.chr27             17925888 27 +  44118849 AAAGGCAAAGATTATTCCAAAATGCTT
i capHir1.chr27            C 0 I 194
s equCab2.chr27             18741175 27 -  39960074 AAAGGGAAAGGTTATTAAAAAATTCTT
i equCab2.chr27            C 0 I 195
s felCat8.chrB1             20471023 27 + 206538554 AATGGAAAGGATTATTCCAAAATTCTT
i felCat8.chrB1            C 0 I 203
s canFam3.chr16             18188544 27 -  59632846 AATGGGAAAGATTATTCCAAAATTCTT
i canFam3.chr16            C 0 I 209
s odoRosDiv1.KB229312         745006 27 -   2017862 AATGGGAAAGATTATTCCAAAATTCTT
i odoRosDiv1.KB229312      C 0 I 203
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chr3             144851680 80 + 204416410 I
e pseHum1.KB221293           1179931  0 -   1495300 I
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737334             56903 4702 -    565068 I
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5               9605730  0 - 304825324 I
e taeGut2.chr1A             23692651 539 +  73657157 T
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=12617.000000
s hg38.chr8_KI270814v1_alt     66978 14 +    141812 TTTATAAACATTAG
s ponAbe2.chr8              59036824 14 + 153482349 TTTACAAACATTAG
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48110232 14 + 100215132 TTCACAAACATTAG
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190750563 14 - 190850796 TCTACATGTTTTAG
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14114416 14 -  14256875 TCTACATGTTTTAG
i saiBol1.JH378165         C 0 I 187
s orcOrc1.KB316932           3013422  8 -  10937097 TTTGGAAG------
i orcOrc1.KB316932         I 189 C 0
s panHod1.KE114653           1498430  8 -   2937107 TTTGGAAG------
i panHod1.KE114653         I 194 C 0
s bosTau8.chr27             18214369  8 +  45407902 TTTGGAAG------
i bosTau8.chr27            I 194 C 0
s oviAri3.chr26             17840580  8 +  44077779 TTTGGAAG------
i oviAri3.chr26            I 193 C 0
s capHir1.chr27             17926109  8 +  44118849 TTTGGAAG------
i capHir1.chr27            I 194 C 0
s equCab2.chr27             18741397  8 -  39960074 TTTGGAAG------
i equCab2.chr27            I 195 C 0
s felCat8.chrB1             20471253  8 + 206538554 TTTGCAAG------
i felCat8.chrB1            I 203 C 0
s canFam3.chr16             18188780  8 -  59632846 TTTGCAAG------
i canFam3.chr16            I 209 C 0
s odoRosDiv1.KB229312         745236  8 -   2017862 TTTGTAGG------
i odoRosDiv1.KB229312      I 203 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chr3             144851680 80 + 204416410 I
e pseHum1.KB221293           1179931  0 -   1495300 I
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737334             56903 4702 -    565068 I
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5               9605730  0 - 304825324 I
e taeGut2.chr1A             23692651 539 +  73657157 T
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=14955.000000
s hg38.chr8_KI270814v1_alt     66992 4 +    141812 ACTA
s ponAbe2.chr8              59036838 4 + 153482349 ACTA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48110246 4 + 100215132 ACTA
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190750577 4 - 190850796 AATA
i calJac3.chr3             C 0 I 227
s saiBol1.JH378165          14114617 4 -  14256875 ATTA
i saiBol1.JH378165         I 187 C 0
s orcOrc1.KB316932           3013430 4 -  10937097 ACTG
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1498438 4 -   2937107 ACAG
i panHod1.KE114653         C 0 C 0
s bosTau8.chr27             18214377 4 +  45407902 ACGA
i bosTau8.chr27            C 0 C 0
s oviAri3.chr26             17840588 4 +  44077779 ACAG
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17926117 4 +  44118849 ACAG
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18741405 4 -  39960074 ACTG
i equCab2.chr27            C 0 C 0
s felCat8.chrB1             20471261 4 + 206538554 ACTG
i felCat8.chrB1            C 0 C 0
s canFam3.chr16             18188788 4 -  59632846 ACTA
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         745244 4 -   2017862 ACTG
i odoRosDiv1.KB229312      C 0 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chr3             144851680 80 + 204416410 I
e pseHum1.KB221293           1179931 0 -   1495300 I
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737334             56903 4702 -    565068 I
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5               9605730 0 - 304825324 I
e taeGut2.chr1A             23692651 539 +  73657157 T
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=1323556.000000
s hg38.chr8_KI270814v1_alt     66996 291 +    141812 CCTTTGTTCATGCAAAT----GTGTTT-AAACTATTTCTTA-CCCCTGATAATAGGTATAAGCCTAGGAATTATTTTTGATTATGATTTGGTCTGTAAATAAATCAT-GAAGGTAGACCATCCTCCCT-GGAAGCATTGAGGTACCATAAAACTTTGACATTGGAGGTGACAGATTGTAATATGGTTTAAT---CATGTATTTGTTATGAGAACTCTGACAAGCCTGAGTTAC--A-AGTAAGCTTGGAAACAC----AAATTCTGTG-A--AAAATACTacacact----------cacacacacacagacagacacacac
s ponAbe2.chr8              59036842 291 + 153482349 CATTTGTTCATGCAAAT----GGGTTT-AAACTATTTCTTA-CCCCTGATAATAGGTATAAGCCTAGGAATTATTTTTGATTATGATTTGGTCTATAAATAAATCAT-GAAGGTAGACCATCCTCCCT-GGAAGCATTGAGGTACCATAAAACATTGACATTGGAGGTGACAGATTGTAATTTGGTTTAAT---CATGTATTGGTTATGAGAACTCTGACAAGCCTCAGTTAC--A-AGTAAGCTTGGAAACAC----AAATTCTGTG-A--AAAATACTACACACT----------CACACACAGACAGACAGACACACAC
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48110250 302 + 100215132 CATTTGTTCATGCAAAT----GGGTTT-AAACTATTTCTTACCCCCTGATAATAGGTATAAGCATAGGAATTATTTTTGATTATGATTTGGTCTGTAAATAAATCAT-GAAGGTAGGCCATCCTCCCT-GGAAGCATTGAGGTACCATAAAACTTTGACATTGGAGGTGGCAGACTGTAATTTGGTTTAAT---CATGTATTTGTTATGAGAACTCTGACAAGCCTCAGTTAC--A-AGTAAGCTTGGAAACAC----AAATTCTGTG-A--AAAATACTACACACTGacacacacacacacacacacacacagacacacac
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190750808 296 - 190850796 CATTTGTTCATGTAAGTCAGAAAGTTT-AAACTACTTCCTA-TCCCTGCT-ATAGGTTCAAGGCTAAGCACTGTTATTCATTATGATTTGTTCTTTAAATAAATCAT-GACGGTAGACCATACCCCAT-GAGAGCCTTGAGGTGCCGTAAAGCTCCAGAGCCAGAAGCAACGGGTTGTAATTTAGTTCAGC---CACACATTTGTCATGAGAACTCTGGCAAGCTTCAGCTCTA-A-AGTAAGCTTGGAAACACAAAGAAATTCTGTG-A--AAAATACTacacaca----------cacacacacacacacacacaca---
i calJac3.chr3             I 227 C 0
s saiBol1.JH378165          14114621 299 -  14256875 CATTTGTTCATGTAAGTCAGAAAGTTT-AAACTATTTCCTA-TCCCTGCT-ATAGGTTCAAGGCTAAGAATTGTTATTCATTATGATTTGGTCTTTAAATAAATCAT-GACAGTAGACCATACCCCAT-GAGAGCCCTGAGGTGCTGTAAAGCTCCAGCGCCAGAAGCAACGGGTTGTAATTTAGTTCAGT---CACACATTTGTTGTGCGAACTCTGGCAAGCTTCAGCTCTA-A-AGTAAGCTTGGAGACACAAAGAAATTATGTG-A--AAAATACcacacaca----------cacacacacacacacacacacacac
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3013434 273 -  10937097 CATTTATTAATGCAAATCACAAAGTTT------ATTTCTGA-CCCCTGCT-ATAGGTTTAAGCCCGGCAATTGGTATTGGTTATCATTTGGTCTGTAAATAAATTGCAGAAGGCAGACCATCCCCCCT-GGAAGCATTAGGGTAGC--AAGGCTCCAGTGCCAGAGGTGA--GGTTGTAATTTAGTTCAAT---CATGCATGTGTTATGAGAACTCTGACAAGCTTCAGCTCATCAGAGTAAGCTTGGCAACACAAAGAAATTCTGTGAA--AAAATATTGCACAAA----------AAGA---------------------
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1498442 277 -   2937107 CATTTATAAGTGGAAATCACAAAGTTT-AAGTAATTTCTGA-CCCCTTCT-ATTGGTTTAAGCCCAGGAATTGCAATTGTTCATCATTCAGTCTGTAAATAAATCACAGAAGGCAGACCATCCCCGCT-GGGAGCCTT-GGGTAGCATAAGGCTCCAGGGGCAGAGGTGAAGGGTTGTAATTTAGTTCAAT---CATACATTTG-AACTAAAGCTCTGACCGGCTTCAGCTCTACA-AGTAAGC-TGGCAACACAAAGAAATTCTGTG-A--AAAGTACTGCACACA----------AAGA---------------------
i panHod1.KE114653         C 0 C 0
s bosTau8.chr27             18214381 278 +  45407902 CATTTATAAGTGCAAATCACAAAATTT-AAGTAATTTCTGA-CCCCTGCT-ATTGGTTTAAGCCTAGGAATTGCGATTGTTTATCATTCGGTCTGTAAATAAATCACAGAAGGCGGACTATCCCCACT-GGGAGCCTT-GGGTAGCAGAAGGCTCCAGGGGCAGAGGTGAAGGGTTGTAATTTAGTTCAAT---CATACATTTG-AACTAAAGCTCTGACAGGCTTCAGCTCTATG-GGTAAGCTTGGCAACACAAAGAAATTCTGTG-A--AAAGTACTGCACACA----------AAGA---------------------
i bosTau8.chr27            C 0 C 0
s oviAri3.chr26             17840592 278 +  44077779 CATTTATAAGTGGAAATCACAAAGTTT-AAGTAATTTCTGA-CCCCTGCT-ATTGGTTTAAGCCCAGGAATTGCAATTGTTCATCATTCAGTCTGTAAATAAATCACAGAAGGCAGACCATCCCCGCT-GGGAGCCTT-GGGTAGCATAAGGCTCCAGGGGCAGAGGTGAAGGGTTATAATTTAGTTCAAT---CATACATTTG-AACTAAAGCTCTGACCGGCTTCAGCTCTACA-AGTAAGCTTGGCAACACAAAGAAATTCGGTG-A--AAAGTACTGCACACA----------AAGA---------------------
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17926121 277 +  44118849 CATTTATAAGTGGAAATCACAAAGTTT-AAGTAATTTCTGA-CCCCTGCT-ATTGGTTTAAGCCCAGGAATTGCAATTGTTCATCATTCAGTCTGTAAATAAATCACAGAAGGCAGACCATCCCCGCT-GGGAGCCTT-GGGTAGCATAAGGCTCCAGGGGCAGAGGTGAAGGGTTGTAATTTAGTTCAAT---CATACATTTG-AACTAAAGCTCTGACCGGCTTCAGCTCTACA-AGTAAGCTTGGCAACACAAAGAAATTC-GTG-A--AAAGTACTGCACACA----------AAGA---------------------
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18741409 283 -  39960074 CCTTTGTTGGTGCAAATCACAAAGTTTAAAACTATTTCTGA-CCCCTGTT-ACAGGTTTAAGCCTGAGAATTGTTATTCCTTATTATCTGGTCTGTAAATAAATCACAGAAGGCAGGTCATCGCCCC--TGGAGCTTTGGGATAGCATAGGGCTCCAACGCTGGAGGTGAAAGGTTGTAATTTGGTTCAATGACCATGCATTTGTTATAAGAACTCTGACAAGCTTCAGCTCTACA-AGTAAGCTTGGCAACACCAAGAAATTCTGTG-A--AAAATACTGCAGAGA----------AAGA---------------------
i equCab2.chr27            C 0 C 0
s felCat8.chrB1             20471265 271 + 206538554 CACTTGTTAGTGCAAATCACAAAGTTT-AAACTATCCCTGA-CCCCTGCT-ATAGGTGTCAGCCTGGGAATTGTTATTTGTTATCATTTGGTCTGTAAATAAATCACAGACGGCAGACCAGCGCCCCCAGGAAGCATTGGGGTAGCGTAAGGCTCCAATGCCAGAGGCGAA-----------CTGCTCAAT---CATGCATTTGTTATGAGGACTCTGACAAGCTTCAGCTCTACA-AGTGAACTTGGCAACACAAAGAAATTCTGTG-AA-AAAATATTGCACAAT----------AAGG---------------------
i felCat8.chrB1            C 0 C 0
s canFam3.chr16             18188792 281 -  59632846 CATTTGTTAGTGCAAATCACGAAGTTT-AAACTATTTCTGA-CCCCTGCT-ATAGGTTTAAGCCTGGGAATTGTTATTTGTTATCATTTGCTCTGTAAATAAATCACAGAAGGCAGACCATCCCCCCT-GGAAGCACTGAGGTAGCGTAAGACTCCAGTGCCAGCGGCAAAGGGTTGTAATTTAGTTCAAT---CATGCATTTGTTATGAGAACTCTGACAAGCTTCAGCTCTACA-AGTAAACCTGGC-ACACAGAGAAATTCTGTG-AAGAAAATACCATGCAAA----------AAAG---------------------
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         745248 281 -   2017862 CATTTGTTAGTGCAACTCACAAAGTTT-GGACTATTTCCGA-CCCCTGAT-ACAGGTTTAAGCCTGGGAATTGTTATTTGTTATCATTTTGTCCATAAATAAATCACAGAAGGGAAACCATCCCCCC--GGAAGCTTTGGGGTAGCATAAGGTTCCAGTGCCACAGGCAAAGGGTTGTAATTTAGTTCAAT---CATGCATTTGTTATGAGAACTCTGACAAGCTTCAGCTCTACA-AGTAAACTTGGCAACACAGAGAAATTCTGTG-AAAAAAATACTGCGCACA----------AAGG---------------------
i odoRosDiv1.KB229312      C 0 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chr3             144851680  80 + 204416410 I
e pseHum1.KB221293           1179931   0 -   1495300 I
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737334             56903 4702 -    565068 I
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5               9605730   0 - 304825324 I
e taeGut2.chr1A             23692651 539 +  73657157 T
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=205534.000000
s hg38.chr8_KI270814v1_alt     67287 60 +    141812 T-ATCACTTCTCTCTTTTTATCTTGACATAGAAAAT---GTAAGTATACCAAGAAGTAATCTCC
s ponAbe2.chr8              59037133 60 + 153482349 T-ATCACTTCTCTCTTTTTATCTTAACATAAAAAAT---GTAAGTATACCAAGAAGTAATCTCC
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48110552 60 + 100215132 T-ATCACTTCTCTCTTTTTATCTTGACATAGACAAT---GTAGGTATACCAAGAAGTAATCTCC
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190751104 59 - 190850796 --ATCACTCCTCTCTTTTTACTCTGGCATAGAAGAT---GTAAGCGTACCAACAAGTGACCTCC
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14114920 61 -  14256875 acaTCACTCTTCTCTTTTTACTCTGGCAAAGAAGAT---GTAAGTGTAACAACAAGTGACCTCC
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3013707 51 -  10937097 --ATCGATCCTCTCTTCTTATCCTGAGGTATAAAAT---GTGAGTTTTGT--------ATCTCT
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1498719 51 -   2937107 --ATCAATCCTCTCTTCTTATCTTAAGGTACAAAAT---GTGAGTTTTGT--------ATCTCT
i panHod1.KE114653         C 0 C 0
s bosTau8.chr27             18214659 46 +  45407902 --ATCGATCCTCTCTTC-----TTAAGATACAAAAT---GTGAGTTTTGT--------ATCTCT
i bosTau8.chr27            C 0 C 0
s oviAri3.chr26             17840870 51 +  44077779 --ATCAGTCCTCTCTTCTTCTCTTAAGGTACAAAGT---GTGAGTTTTGT--------CTCTCT
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17926398 51 +  44118849 --ATCGGTCCTCTCGTCTTCTTTTAAGGTACAAAAT---GTGAGTTTTGT--------CTCTCT
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18741692 59 -  39960074 --ATCACTCCTCCCTTCTTATCCTGAGATAGAAAAT---GTGAGTTTCCCAAGAACTGATCTCT
i equCab2.chr27            C 0 C 0
s felCat8.chrB1             20471536 57 + 206538554 --ATCATTCCTCTCTTATTATCCTAAA--AGAAAAT---GTGAGTTTCCTAAGAACTGATCCCT
i felCat8.chrB1            C 0 C 0
s canFam3.chr16             18189073 59 -  59632846 --ATCACTCCACTCTTCTCATTCTGAGATAGAAAAT---GTGAGTTTCCCAAGAGCTGATCTCT
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         745529 55 -   2017862 --ATCACTCCTCTCTTC----TCTGAGATAGAAAAC---GTGAGTTCCCCAACAGCTGATCTCT
i odoRosDiv1.KB229312      C 0 C 0
s monDom5.chr5             230631913 63 - 304825324 -TACCACTGTTTTATGCATATATATGTATAAATTATCCGGGAAGTTTCCAGAAAAGAAGATTCC
i monDom5.chr5             n 0 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chr3             144851680 80 + 204416410 I
e pseHum1.KB221293           1179931  0 -   1495300 I
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737334             56903 4702 -    565068 I
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e taeGut2.chr1A             23692651 539 +  73657157 T
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=87930.000000
s hg38.chr8_KI270814v1_alt     67347 14 +    141812 AAAGAGCAAATAAA
s ponAbe2.chr8              59037193 14 + 153482349 AAAGAGCAAATAAA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48110612 14 + 100215132 AAAGAGCAAATAAA
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190751163 14 - 190850796 AAGGAGCAAATGAA
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14114981 14 -  14256875 AAAGAGCAAATGAA
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3013758 14 -  10937097 AAAAAGCAAATGAA
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1498770 14 -   2937107 AAAGAGCCAGTGAA
i panHod1.KE114653         C 0 C 0
s bosTau8.chr27             18214705 14 +  45407902 AAAGAGCCAGTGAA
i bosTau8.chr27            C 0 C 0
s oviAri3.chr26             17840921 14 +  44077779 AAAGAGCCAGTGAA
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17926449 14 +  44118849 AAGGAGCCAGTGAA
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18741751 14 -  39960074 GAAGAGCGAATGAA
i equCab2.chr27            C 0 C 0
s felCat8.chrB1             20471593 14 + 206538554 GAAGAGCAAATGAA
i felCat8.chrB1            C 0 I 696
s canFam3.chr16             18189132 14 -  59632846 GAAGAGCAAATGAA
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         745584 14 -   2017862 GAAGAGCAAATGAA
i odoRosDiv1.KB229312      C 0 C 0
s monDom5.chr5             230631976  5 - 304825324 AGAAA---------
i monDom5.chr5             C 0 C 0
s taeGut2.chrZ              13215536 14 +  72861351 AGAGGGTAGAGGGA
i taeGut2.chrZ             n 539 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chr3             144851680 80 + 204416410 I
e pseHum1.KB221293           1179931  0 -   1495300 I
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737334             56903 4702 -    565068 I
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=183741.000000
s hg38.chr8_KI270814v1_alt     67361  88 +    141812 ACAGAAATTTCAAACAAGTGCCTGGGTAGGAGATGCAATTT----------TAACATT--TGTTTAAATTTAACGTTGTTTAACATTG----TTTAAGTGCCTC
s ponAbe2.chr8              59037207  88 + 153482349 ACAGAAATTTCAAACAAGTGCCTGGGTAGGAGATGCAACTT----------TAACATT--TGTTTAAATTTCATGTTGTTTAACATTG----TTTAAGTGCCTC
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48110626  83 + 100215132 ACAGAAATTTCAAACAAGTGCCTGGGTAGGAGATGCAACTT----------TAACA------TTTAAGTTTAACGTTGTTTAACATTG----TTTAAGTGCC-C
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190751177  55 - 190850796 ATAGAAATTTCAAACCAGTGCCTGAGTAGGAGTCGTAACTT----------TAACA---------------------------------------AAGTGCCTC
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14114995  55 -  14256875 ACAGAAATTTCAAATCAGTGCCTGAGTAGGAGCTGTAACTT----------TAACA---------------------------------------CAGTGCCTC
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3013772  53 -  10937097 ATAGAAATTCCGAACAAGTACCAAAGTAGGACATGTGAC------------TAACA---------------------------------------AAATGcctc
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1498784  53 -   2937107 ATAGAAATTCCAAACAGGGACCGAAGTAGGACATGTAAC------------TAACA---------------------------------------AAATACCCC
i panHod1.KE114653         C 0 C 0
s bosTau8.chr27             18214719  53 +  45407902 ATAGAAATTCCAAACAGGGACCGAAGTCGGACATGTAAC------------TAACA---------------------------------------AAATACCCC
i bosTau8.chr27            C 0 C 0
s oviAri3.chr26             17840935  53 +  44077779 ACAGAAATTCCAAACAGGGACCAAAGTAGGACATGTAAC------------TAACA---------------------------------------AAATACCCC
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17926463  53 +  44118849 ACAGAAATTCCAAACAGGGACCGAAGTAGGACATGTAAC------------TAACA---------------------------------------AAATACCCC
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18741765  53 -  39960074 ATAGAAATTCCCAACAAATGCTTATGAAGGACATGTAAC------------TAACA---------------------------------------Aaatgcccc
i equCab2.chr27            C 0 C 0
s felCat8.chrB1             20472303  53 + 206538554 acaGAAATTCCAAATGAGTGCCTAGGTAGAACACATAAC------------TAACA---------------------------------------AAATGCCTC
i felCat8.chrB1            I 696 C 0
s canFam3.chr16             18189146  51 -  59632846 ATAGCAATCCCAAACAAGTGCCTAGGAAGAACATGTAAC--------------ACA---------------------------------------AAATGcctc
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         745598  53 -   2017862 ATAGAAATTCCAAACGAGTACCTAGGAAGAACGTGTAGC------------TAACA---------------------------------------AAATGCCTC
i odoRosDiv1.KB229312      C 0 C 0
s monDom5.chr5             230631981  87 - 304825324 TGAGAAATTTCAGAAAAGTACCAGAGCAGGAGATAGAGT-C----------TACCAGA--CAGAGAGATTGGATATCACTTAACAGGG----TCAACTTGTCCC
i monDom5.chr5             C 0 I 10
s taeGut2.chrZ              13215550 104 +  72861351 AGGGACATCCACAAAATTGGCCTAGTAACATCATCCAATTTCCTTCTTTGCCAATATTCCCGCTCCAAACCCAAGCCTTTTAACTGAATCACTTAAAACGCGAC
i taeGut2.chrZ             C 0 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chr3             144851680  80 + 204416410 I
e pseHum1.KB221293           1179931   0 -   1495300 I
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737334             56903 4702 -    565068 I
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=214335.000000
s hg38.chr8_KI270814v1_alt     67449 60 +    141812 TCATCTCTGCC-------------------------TCATAAACCTATAGTC--ATTTTTCATAACTGCCTG-AAATAGCACCTCCTC
s ponAbe2.chr8              59037295 60 + 153482349 TTATCTCTGCC-------------------------TCATAAACCTATAGTC--ATTTTTCATAACCGCCTG-AAATAGCACCTCCTC
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48110709 60 + 100215132 TCATCTCTGCC-------------------------TCATAAACCTATAGTC--ATTTTTCATAACTGCCTG-AAATAGCACCTCCTC
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190751232 60 - 190850796 TCATATCTGCC-------------------------TCATAAACCCGTCCTC--ATTTTTCACAACTAACTC-AAAAAGCACCCCCTC
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14115050 59 -  14256875 TCATATCTGCC-------------------------GCATACACCCGTACTC--A-TTTTCACAACTAACTC-AAACAGCACCCCCTC
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3013825 60 -  10937097 tcatatctgcc-------------------------ttataaaatcctactc--attcttcaggactaactc-agttagcaccttctc
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1498837 61 -   2937107 TCGTATCTGTT-------------------------GTATAAAATCCTACTT--GTTCTTCGGGACTAACTCAAAATAGTCCAGTCTC
i panHod1.KE114653         C 0 C 0
s bosTau8.chr27             18214772 60 +  45407902 TCGTATCTGTT-------------------------GTATACAATCCTACTC--GATATTCAGGACTAACTC-AAATAGTGCGATCTC
i bosTau8.chr27            C 0 C 0
s oviAri3.chr26             17840988 60 +  44077779 TCGTATCTGTT-------------------------GCATAAAATCCTACTC--ATTCTTCGGGACTAACTC-AAATAGTCCAATCTC
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17926516 60 +  44118849 TCGTATCTGTT-------------------------GCATAAAATCCTACTC--GTTCTTCGGGACTAACTC-AAATAGTCCAATCTC
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18741818 60 -  39960074 tcatatctgcc-------------------------ttacaaaatcctaccc--attcttcaggactaattt-aaatagcgcctcctc
i equCab2.chr27            C 0 C 0
s felCat8.chrB1             20472356 61 + 206538554 ATATAAAGGCC-------------------------TCATAAAACCCGAGTTGAATTCTTCAGG-CAAACTC-GGATAGCACCTCCTC
i felCat8.chrB1            C 0 C 0
s canFam3.chr16             18189197 59 -  59632846 ctctgttggcc-------------------------tcataaaatccaaccc--attcttcagg-caaactc-aagtagcatctcctc
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         745651 84 -   2017862 TTCTGTTGGCCTCATAAAATCAAGGTCTTTAGAGTTTCATAaaatccaactc--attctttagg-caaactt-aaacagcacctcctc
i odoRosDiv1.KB229312      C 0 C 0
s taeGut2.chrZ              13215654 60 +  72861351 TCATTTATATT-------------------------TTATCACCCTGTTGTC--ATTTTTGAAACATGAATG-ATATTTCATGTTCTC
i taeGut2.chrZ             C 0 I 90
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chr3             144851680 80 + 204416410 I
e pseHum1.KB221293           1179931  0 -   1495300 I
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737334             56903 4702 -    565068 I
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5             230632068 10 - 304825324 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=2172938.000000
s hg38.chr8_KI270814v1_alt     67509 539 +    141812 TGTAACAACTTTCCTGTTCTACCCATCAAATATACTTGCTGGTTGACTGTATCCTCTTGCTCAGAACACATGACACTTTCTACAGGGTGCTGTCTATGCTTTGACAGTAAC------AGGACTTTTGGGCAGGGATTTTCCAATTCAT-TGTCTAACTCCCACTAC--AATTGTCCTTCACCATGCACCCGGCAGGCACTTG-AAG--TGCTGGTTGAGCAC--TAAAatcttggaatgctacatagccattccaacgtaaataatcattgtttaaaacattttgaaagttcttttggaactga--ctttttagaatttt-taaatatctcagtgataa--gtcttcactcttc-aagttagatc-----gtattttattttagaaac-atcaaaagccatacaaaaccaagcctgTATATTTGTGCATTCTGTCTTCTTCCCCC--TCAATGCTAAGGAAGG----TTTCTTTTTCCTAGGCCAAATGCTCCACAAATAAATGTGTtgaatgaatgaacaaatgaataagcgaagtgaatgGAACATCAAACTGCATAAAAATATATTTA
s ponAbe2.chr8              59037355 537 + 153482349 TGTAACAACTTTTCTGTTCTACCCATCAAATATACTTGCTGATTGACTGTATCCTCTTGCTCAGAACACATGACACTTTCTACTGGGTGCTCTCTATGCTTTCACAGTAAC--------GACTTTTGGGCAGGGATTTTCCAATTCAT-TGTCTAACTCCCACTAC--AATTGTCCTTCACCATGCACCCGGCAGGCACTTG-AAG--TGCTGGTTGAGCAC--TAAAatcttggaatggtacatagccattccaacgtaaataatcattgtttaaaacattttgaaagttcttttggaactga--ctttttagaatttt-taaatatctcagtgataa--gtcttcactcgtc-aagttagatc-----gtattttattttagaaac-atcgaaagccatacaaaaccaagcctgTATATTTGTGCATTCTGTCTTCTTCCCCC--TCAATGCTAAGGAAGG----TTTCTTTTTCCTAGGCCAAATGCTCCACAAATAAATATGTtgaatgaatgaacaaatgaataagtgaagtgaatgGAACATCAAACTGCATAAAAATATATTTA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48110769 536 + 100215132 --TAACAACTTTCCTGTTCTACCCACCAAATATACTTGCTGATTGACTGTATCCTCTTGCCCAGAACACATGACACTTTCTACAGGGTGCTCTCTATGTTTTGACAGTAAC------AGGACTTTTGGGCAGGGATTTTCCAATTCAT-TGTCTAACTCCCACTAC--AATTGTCCTTCACCATGTACCCAGCAGGCACTTG-AAG--TGCTGGTTGAGCAC--TAAAatcttggaatgctacatagccattccaatgtaaataatcattgtttaaaacattttgaaagttcttttggaactga--ctttttagaatttt-taaatatctcaatgatag--gtcttcactcttc-aagttagatc-----gtattttattttagaaac-atcaaaagccatacaaaaccaagcctgTATATTTGTGCATTCTGTCTTCTTCCCCC--TCAATGCTAAGGAAGG----TTTCTTTCTCCTAGGCCAAATGCTCCACAAATAAATGTGTtgaatgaatgaaaaaatgaataagtg-aGTCAGTGTAACATCAAACTGCATAAAAATATATTTA
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190751292 542 - 190850796 AGTGACACCCCTCCTGTTCTGCGCACCACATATGCTGGCTGACTGACGGTATCCTCTCACCCAGAATACACGGCACTTTCTACAGGGGGC--TCTATGCTTTGATACTAACT----GAGGACCTGTGGGCAGAGGGTTTTCAATGCATGTCTGTGGCTCTCATT-C--AATTGTCCTGCATCAGGCACCCAGCAAGTGGTAATAAA--TACTGGTTTAATAC--TAAAACCTTGGAATGCT-CATAATTATTCTAAAG--GATAGTCATTTTAAAAAACATTTTGGAAGCTTTTTTGAAACTGA--CTTTTTAGAGTATT-AAACTATCTCAGTGATAG--GTCTTTGGTCTTCTACGTTAGAAC-----TTGTTTTATCTTAGAAACTGTCAAAAGCTATACAAAACCAAGCATGTA--TCTGTGCATTTTGTTTTCCCTCCCCTGTTAATGCTAAGGAAGGGTTTCTTCTCTTTCCTAGGCCAAATGTTCCACAAATGAATGTGTT-AATGAATGAGCAAATTAGTAAATGACATGAATGGGAGATCAAACTGCTTAAAAGTATATTTA
i calJac3.chr3             C 0 I 347
s saiBol1.JH378165          14115109 545 -  14256875 AGTGATACCCCTCCTGTTCTGCCCACCACATATGCTTGCTGACCGATGGTATCCTCTCACCCAGAATACACGGCACTTTCTACAGGGGGC--TCTAGGCTTTGATACTAACT----GAGGACCTATGGGCAGAGGGTTTTCAATTCATGTCTGTGGCTCTCATT-C--AATTGTCCTGCATCAGGCACCCAGCAGGTGGTAATAAA--TACTGGTTTAATAC--TGAAACCTTGGAATGCTACATAATTATTCTAAAG--GATAGTCATTTTTAAAAACATTTTGAAAGCTTTTTTGAAACTGA--CTTTTTAGATTATT-AAACTATCTCAGTGATAG--GTCTTTGGTCCTCTAGGTTAGAAC-----TTGTTTTATCTTAGAAACTGTCAAAAGTTATACAAAACCAAGCATGTATCTCTGTGCATTTAGTTTTCTCTCCCGTGTTAATGGTAAGGAAGGGTTTCTTCTCTTTCCTAGGCCAAATGTTCCACAAATGAATGTGTT-AATGAATGAGCAAATTAGTAAATGACATGAATGGGAGATCGAACTGCATAAAAGTGTATTTA
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3013885 543 -  10937097 cttgataccagctctgttcctcTCACCAGATACACTTGCT----GACTGCGTCCTCTTGCCCAGAACACGAGGTACTGTCTCTGAGG---TATTTACCCTTACATGGTAACT----GAGTACCTATGGTCAGGGACTTTCCAATTCA--TTTGTGACTCCCACTAC--AATTGTCCTGCATCAGGCACACAGAAGACACTCA------CATTGGTTGAACACTTTGAAACCTTGGAATGCTACACAGTCGTTCCAATAAGGGTAATCATTTTTAATAACATTTTGGAAGTTCTTTTGGTGCTGA--CTTTTTTGATGCCT-TAATATTTCCCGTGATAGCAGGTCTTGCCCTTCCAGGTTAGATCTTATTTTATTTTATTTTAGAAACTGTCAAAAGTCATACAAAATCACGCTTATATCTCTGAACATTCTTTCTTCTTTCCCCC-TTGATGCTAAGGAATGGC---CTCTTCTTCCCACGTCAGCTGCTCCAAAAATAAATGTGTTGGATGAACGAACAAGTGAATAAGTGAAGTAAATGGGATATGAAATTGTATAAGGGTTTATTTA
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1498898 549 -   2937107 CGTGAAAGCATCTCTGTTTCTCTCACCAGATGTACTTGCT----GACTGCATCCTCTCACCCAGAGCATGAAGTACATTCTCTGAGGT--TGTCTACCTTTAGACGGTAACT----GAGTGCCTATGGTCAAGGACTTTCCGATTCAT-TTTGTGACTCCCACTCCCAGGTTATCCTGCACCAAGTACACAGAGGATACTAATTAAAGCGTTGATTGAATGCTTTGAAAGCTTGGAATGCCACGCGGTCATTGCAACATGGGTAATCATTTTTAAAAACATTTTGCAAGTTCTTTCAGTGTCAATTTTTTTTAGATGTTT-TAATACTTCCAGTGATAGCAGCTCTTGCCCTTCCAAGTTAAATC-----TTATTTTAATTTAGAAACTGTCAAAAGTCATACAAAATCAGGCTTAAATATATGAACAGCCTCTCTTCTTTCCCCC-TTGATTGTAAGAAAAGGC---CC-TTCTTTCCAGGGCAACTGCTTCAGGAAGAAATCTGTTGAATGAACGGACAAGTGAGTAAGTGAAGTAAACGAGAGATGAAATTGTATACAGGTTTATTTA
i panHod1.KE114653         C 0 C 0
s bosTau8.chr27             18214832 544 +  45407902 CATGAAAGCGTCTCTGTTTCTCTCACCAGATGTACTTGCT----GACTGCATCCTCTCACCCAGAGCATGAAGTACGTTCTCTGAGGT--TTTCTACCTTTAGACGGTAACT----GAGTGCCTATGGTCAAGGACTTCACGGTCCGT-TTTGTGACTCCCAATAC--AGTTGTcctgcaccaagcacacagaggatactaattaa--tgttggttgaatgCTGTGAAaccttggaatgccacacggtcattgcaacatgggtaatcatttttaaaaacattttgcaagttctttcggtgtcaa--ttttttagatattt-taatacttccagggatagcagctcttgcccttccaagttaaatc-----ttattttaatttaaaaactgtcaaaagtcatacaaaatcagtcttaaataTCTGAACAGCCTCTCTTCCTTCCCCC-TTGATGCTAAGGAAAGGC---CCTTTCTTTCCCGGGGAACTGCTTCATAAATAAATCTGTTGAATGAACGAACAAGTGAATAAGTGAAGTAAATGAGAGATGAAATTGTATACGGGTTTATTTA
i bosTau8.chr27            C 0 C 0
s oviAri3.chr26             17841048 527 +  44077779 CGTGAAAGCGTCTCTGTTTCTCTCA--AGATGTACTTGCT----GACTGCTTCCTCTCACCCAGAGCATGAAGTACGTTCTCTGAGGT--TGTCTACCTTCAGACGGTAGCT----GAGTGCCTATGGTCAAGGACTTTCCGATTCAT-TTTGTGACTC---------------------CCACTCCCACAGAGGATACTAATTAAAGCGTTGATTGCACGCTTTGAAAGcttggaatgccacacggtcattgcaacatgggtaatcatttttaaaaacattttgcaagttctttcagggtcgattttttttagatgttt-taatacttccagtgatagcagctcttgcccttccaagttaaatc-----ttattttaatttagaaactgtcaaaagtcatacaaaatcaggCTTAACTATATGAACAGCCTCTCTTCTTTCCCCC-TTGATGGTAAGAAAAGGC---CCTTTCTTTCCAGGGCAACTGCTTCCGGAAGAAATCTGTTGAATGAACGGACAAGTGAGTAAGTGAAGTAAACAAGAGATGAAACTGTATACGGTTTAATTTA
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17926576 506 +  44118849 CATGAAAGCGTCTCTGTTTCTCTCACCAGATGTACTTGCT----GACAGCATCCTCTCACCCAGAGCACGAAGTACGTTCTCTGAGGT--TGTCTACCTTCAGACGGTAGCT----GAGTGCCTATGGTCAAGGA---------------------------------------------CCAAGTACACAGAGGATACTAATTAAAGCGTTGATTGGACGCTTTGAAAGCTTGGAATGCCGCTCGGTCATTGCAACATGGGTAATCATTTTTAAAAACATTTTGCAAGTTCTTTCAGGGTCGATTTTTTTTAGATGTTT-TAATATTTCCAGTGATAGCAGCTCTTGCCCTTCCAAGTTAAATC-----TTATTTTAATTTAGAAACTGTCAAAAGTCATACTAAATCAGGCTTAACTATATGAACAGCCTCTCTTCTTTCCCCC-TTGATGATAAGAAAAGGC---GGTTTCTTTCCAGGGCAACTGCTTCAGGAAGAAATCTGTTGAATGAACGGACAAGTGAGTAAGTGAAGTAAACGAGAGATGAAATTGTATATGGGTTTATTTA
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18741878 543 -  39960074 catgacatcttccctagtcctccCACCAGATGCACTTGCT----GACCACATCCTCTCTCCTAGAACACGTGGTACTTTCCGCAAGA---TATTGACACTTAGACAGTAACT----GAGTGCCTATTGTCAGGGACTTTCCAGTTTAT-TTTGTGACTCCCACTAT--AGTTGTCCTCCGCCAGGCACACAGCAGACACTAATAAA--CGTCGGTTGAACAGTTTGAAACCTGAGAATGCTACATAATCTTTCCAACATGGCTAATCATTCTTTAATGCATTTTGGAAGTTTTTTTGGAACGGA-TTTTTTTAGATTTTTTTAATATTTCCAGAGATAGTAGGTCTTGCCCTTTCAGGTTTGATC-----TTATTTTATTTCACAAACTGTCAAACGTCATAA-AAATCAAGTCTGTATCTCTATACATTCCCTCTTCTTTCCCCC-TTGGTGCTGAAGAATAGT---TTCTCCTTCCCAGGGCAGCCACTCCACAAATAAATGTGTTGAATGAATGAACAAGTGAAGAAGTGAAGTAAAT-AGAAATCAAACTGTATAAGGATATATTTT
i equCab2.chr27            C 0 C 0
s felCat8.chrB1             20472417 530 + 206538554 CATGACCCCTTCCCTGTTCCACCCACCAGGCACATTTGCT----GACCATATCACCTCTCC-AGAGCACATGGTACTTTCTACATGG---TATCTACACTTAGACTGTAATT----GAATACCTACGGTCATGGACTTTACAACTCAT-TTCGTGACTCCCACTAC--AATTGTCCTGCATCAG----------GACACTAATAAA--TGTTGGTGGGACACTTTGAAGCCTCAGAAATCTAAGTAGTCATTCCAACATCACTAATCCTTTTtcaaaacattttggaagttcttttggaact-a--tttttcatatttttaaagtatttccagtaacagcatatcttgacc-ttcaagttagatc-----ttattttattttagaaactgtcaaaagtcaagcaaagtcaagcctgTAGCTCTATACTTTCTCTCTTCTTTCCTCC-CTGATGCTAAAGAATGGTCCCTTTTCCTTCCCAGGACAACCATTCCACAAATAAACGTGTTAAATGAATGAAAAAGTGAATAAGAG----AAGTGGGAGATAAGAGTGCATAAGGGTATATTTG
i felCat8.chrB1            C 0 C 0
s canFam3.chr16             18189256 541 -  59632846 catgacaccttccctgttccacacaccagatACACTTGCT----GACCACATCCCCTTTTC-AGAACACATA---CTTTCTACATGC---TACCTACACATAGACAATAACTGAAGGAATGCCTATAGTCAGGGACTTTTCAATTCAT-TTAGTGACTTCCACTAT--AACTGTCCTGTACAAAGCACAGTGTAGACACTAATAAA--TGTTGATGGAACACTTTGGAaccttggaaaggtaactagtcattccaacatggctaatgatttttcaagacattttggaagttcttttggaactga--tttttcagatttttaaaacgtttccagtgatagcaggttttgccc-tttaagttagatc-----ttattttattttagaaacagtcaaaagtcaagc-aagtcaagcctgTAGCTCTCTACATTCTCTCTCCTTTCCCCC-TTGATGCT-AAGAATGGTCCCTTTTCCTCCCTAGGACAATCATTCCACAAATAAATGTGTTGAATGAATGAAAAAGTGAATAAGTCAAGTAAGTGGGAGATCAG---TTATAAGGATATATTTA
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         745735 530 -   2017862 catgataccctccctgttcttccCACCAGATACACTTGTT----GACCACACCGCCTCTCC-AGGACACATG-----------GTAC---TTTCTACACTTAGACAGTAACT----GAATGCCTATGGTCAGGGGTTCTCCAACCCAT-TTTGTGACTCCCACTAC--AATtttcctgcaccaggcacacagtagatgctcataaa--cattggtggaaCACTTTGAAaccctggaaagctaagtagtcattccaacatggctaataatttttcaaaacattttggaagttcttttggaactga--tttttcagatttttaaaatatttccagtgatatcaggtcttgccc-ttcaagttagatc-----ttactttattttagaaactgtcaaaagtcatccaaaatcaagcctgTAGCTCTGTACAT----TCTTCTTTCCCCC-TTGATGCTAAAGAATAGTCCCTTTCTCTGCCCAGGGCAACCATTCCACAAATAAATGTGTTGAATGAATGAAAAAGTGAGTAAGTGAAGTAAGTGGGAGATCAAATTGTATAAGGGTATCTTTA
i odoRosDiv1.KB229312      C 0 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chr3             144851680  80 + 204416410 I
e pseHum1.KB221293           1179931   0 -   1495300 I
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737334             56903 4702 -    565068 I
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5             230632068  10 - 304825324 I
e taeGut2.chrZ              13215714  90 +  72861351 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=21396.000000
s hg38.chr8_KI270814v1_alt     68048 5 +    141812 TTCAT
s ponAbe2.chr8              59037892 5 + 153482349 TTCAG
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48111305 5 + 100215132 TTCAG
i nomLeu3.chr16            C 0 C 0
s saiBol1.JH378165          14115654 2 -  14256875 ---AA
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3014428 5 -  10937097 TTCAA
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1499447 5 -   2937107 TTCAA
i panHod1.KE114653         C 0 C 0
s bosTau8.chr27             18215376 5 +  45407902 TTCAA
i bosTau8.chr27            C 0 C 0
s oviAri3.chr26             17841575 5 +  44077779 TTCAA
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17927082 5 +  44118849 TTCAA
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18742421 5 -  39960074 TTCAA
i equCab2.chr27            C 0 C 0
s felCat8.chrB1             20472947 5 + 206538554 TTCAA
i felCat8.chrB1            C 0 C 0
s canFam3.chr16             18189797 5 -  59632846 TTTTA
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         746265 5 -   2017862 TCCAA
i odoRosDiv1.KB229312      C 0 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chr3             144851680 80 + 204416410 I
e pseHum1.KB221293           1179931 0 -   1495300 I
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737334             56903 4702 -    565068 I
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e calJac3.chr3             190751834 347 - 190850796 I
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5             230632068 10 - 304825324 I
e taeGut2.chrZ              13215714 90 +  72861351 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=40420.000000
s hg38.chr8_KI270814v1_alt     68053 12 +    141812 AAATGAGAGGT-G
s ponAbe2.chr8              59037897 12 + 153482349 AAATGAGAGGT-G
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48111310 12 + 100215132 AAATGAGAGGT-G
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190752181 12 - 190850796 aAATAAGAAGT-G
i calJac3.chr3             I 347 C 0
s saiBol1.JH378165          14115656 12 -  14256875 AAATAAAAAGT-G
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3014433 12 -  10937097 ATATGAGGGATA-
i orcOrc1.KB316932         C 0 I 172
s panHod1.KE114653           1499452 11 -   2937107 AAATGAGGGAT--
i panHod1.KE114653         C 0 C 0
s bosTau8.chr27             18215381 11 +  45407902 AAATGAGGGAT--
i bosTau8.chr27            C 0 C 0
s oviAri3.chr26             17841580 11 +  44077779 AAATGAGGGAT--
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17927087 11 +  44118849 AAATGAGGGAT--
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18742426 12 -  39960074 AAATAAGAGTT-A
i equCab2.chr27            C 0 C 0
s felCat8.chrB1             20472952 12 + 206538554 AAGTCAGGGAT-G
i felCat8.chrB1            C 0 C 0
s canFam3.chr16             18189802 12 -  59632846 AAATAAGGGAT-G
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         746270 12 -   2017862 AAATAAGAGAT-G
i odoRosDiv1.KB229312      C 0 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chr3             144851680 80 + 204416410 I
e pseHum1.KB221293           1179931  0 -   1495300 I
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737334             56903 4702 -    565068 I
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5             230632068 10 - 304825324 I
e taeGut2.chrZ              13215714 90 +  72861351 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=936098.000000
s hg38.chr8_KI270814v1_alt     68065 184 +    141812 ATGATTGCCAACATATCATAATCAGAC-----TCTGACCTTGGTTACTTATGAGTTTGACAACGAAGAGGAAAGAGGATCAGGTAAGTCCCTAAACA-CCGAAGATGTACTGAGACCTTTCCACATGCCCAAAGAAGATACTCTTGCAGAGGAGAA---ATGA---TGAAGAGGCCCAGTCACAGATGCAGGAGGA
s ponAbe2.chr8              59037909 189 + 153482349 ATGATTGCCAACATACCATAATCAGACTCCGTTCTGACCTTGGTTACTTATGAGTTTGACAATGAAGAGGAAAAAGGACCAGATAAGTCCCTAAACA-CTGAAGATGCACTGAGACCTTTCCACATGCCCAAAGAAGGTACTCTTGCAGAGGAGAA---ATGA---TGAAGAGGCCCAGTCACAGATGCAGGAGGA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48111322 189 + 100215132 ATGATTGCCAACATATCATAATCAGACTCTGTTCTGACCTTGGTTACTTATGAGTTTGACAACGAAGAGGAAAGAGGACCAGGTAAGTCCCTAAACA-CCGAAGATGCACTGAGACCTTTCCACATGCCCAAAGAAGATACTCTTGCAGAGGAGAA---ATGA---TAAAAAGGCCCAGTCACAGATGCAGGAGGA
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190752193 188 - 190850796 ACAGTTGCTAACATGTCATAACCAGACTCCGTCCTGATCTCGGCAACCCACAACTTTGACAATGAAGATGAAAGAGGATC----GAATCCCTAAATA-CCACAGGTGTACTAAGACCATCCCACATGCCCAAAGAAGAGAGCCTTGCAGAGGGGAAATGATGA---TGAAGAGGTCTGGTCAGAGATTCAGGAGGA
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14115668 188 -  14256875 ATGGTTGCTAACATGTCATAGCCAGACTCTGTCCTGATCTCGGCAACCCACAACTTTGACAATGAAGATGAAAGAGGATC----AAATCCCTAAATA-CCACAGGTGCACTAAGACCTTCCCACATGCCCAAAGAAGACAGCCTTGCAGAGGGGAAATGATGA---TGAAGAGGCCTGGTCAGAGATTCAGGAGGA
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3014617 188 -  10937097 ATGATTGCCAAACTGCTATAACTAGGCTCTGTCCTGACCTTGGCAACTTACAGCTTTGACAATGAAGAGGAAAGAGCCCT----GGGTCCCTACCTG-CCCCACGTGCACTAAGACTTTTCCATTTGCCCAAAGAAGATGCCCTTGCAGATGAGAAATAATGG---TACAGAGACCTGATCATAAATGTAGGAGGA
i orcOrc1.KB316932         I 172 C 0
s panHod1.KE114653           1499463 191 -   2937107 ATGACTGCCATACTGCTATCACTAGGCTCTGTCCTTACCTTGGAAACCCATGGCTTTGACAATGCAGAAGAAAGAGCATA----GCGGCCCTACTAG-CCCCAGGTGCACTAAGACTTTTCCGTTTCCCTTAAGAAGATGCCCCTGCAGATGAGAAATAATGGAGAAACAGAGACCTGATCAGAAATGTAGGAGGA
i panHod1.KE114653         C 0 C 0
s bosTau8.chr27             18215392 191 +  45407902 ATGACTGCCATACTGCTATCACTAGGCTCTGTCCTTACCTTGGAAACCTATGGCTTTGACAATGAAGAAGAAAGAACAGA----GAGTCCCTACCCA-CCCCAGGTGCACTAAGGCTTTTCTGTTTACCTTAAGAAGATGCCCTTGCAGGTGAGAAATAATGGAGAAACAGAGGCCTGATCAGAAATGTAGGAGGA
i bosTau8.chr27            C 0 C 0
s oviAri3.chr26             17841591 191 +  44077779 ATCACTGCCATGCTGCTATCACTAGGCTCTGTCCTTACCTTGGAAACCCATGGCTTTGACAATGAAGAAGAAAGAGCATA----GAGGCCCTACTAG-CCCCAGGTGCACTAAGACTTTTCTGTTTACCTTAAGAAGATGCCCTTGAAGATGAGAAATAATGGAGAAACAGAGACCTGATCAGAAATGTAGGAGGA
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17927098 189 +  44118849 ATGACTGCCA--CTGCTATCACTAGGCTCTGTCCTTACCTTGGAAGCCCATGGCTTTGACAATGAAGAAGAAAGAGCATA----GAGGCCCTACTAG-CCCCAGGTGCACTAAGACTTTTCTGTTTACCTTGAGAAGATGCCCTTGAAGATGAGAAATAATGGAGAAACAGCGACCTGACCAGAAATGTAGGAGGA
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18742438 187 -  39960074 -CGATCTTCAAACTGCTATGAGCAGGCTCTGTCCTGACTTAGGCAACATACAGCTTTGACAATGAAGAGGAAAGAGGACC----GAGTCCCTATCTG-CCCCAGGTGCACTAAGACTTTCCCATTTGCCAGAAGAAGATGCCCTTGAAGATGAGACGGGATGG---TGCAGAGACCTGGTCAGAAATGTAGGAAGA
i equCab2.chr27            C 0 C 0
s felCat8.chrB1             20472964 188 + 206538554 -TGATTATCAAACTACTATAATCAGGTTCTATCCTAACCTTGGCAACCCACATCTTTGACAATGAAGAGGAAAGAGTACC----AGGCCCCTACGTGCCCCCAGGTACACTAAAACTTTCCCATTTGCCCCAAGAAGATGCCTTTGCAGATGAGAAATGATGG---TGCAGAGACCTGATCATAAATGTCAGAAAA
i felCat8.chrB1            C 0 C 0
s canFam3.chr16             18189814 187 -  59632846 -TGATCATCAAACTGCTATAACCAGGCTCTATCCTAACCTTGGCAACCCACAGCTTTGACAATGAAGAGGAAAAAGGACC----AAGTCCCCACCTG-CCCCAAGTACACTGAAACTTCCCCATTTGACCAAGGAAGATGCCCTTGCAGATGAGAAACGATGA---TACAGAGACCTGATCAGAAATGTGGGAAGA
i canFam3.chr16            C 0 I 233
s odoRosDiv1.KB229312         746282 187 -   2017862 -TGATTATCAAACTGCTATAATCAGGCTCTATCCTAACCTTGGCAACCCATGGCTTTGACAATGAAGAGGAAAAAGGACC----AAGTCCCTACCTG-CCCCTGGTACTCTAAAACTTTCCCATTTGCCCAAAGAAGATGCCCTTGCAGATGAGAAATTATGG---TACAGAGACCTGATCAGAAATATGGGAAGA
i odoRosDiv1.KB229312      C 0 I 14
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chr3             144851680  80 + 204416410 I
e pseHum1.KB221293           1179931   0 -   1495300 I
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737334             56903 4702 -    565068 I
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5             230632068  10 - 304825324 I
e taeGut2.chrZ              13215714  90 +  72861351 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=45456.000000
s hg38.chr8_KI270814v1_alt     68249 12 +    141812 AGTTTAATTGAC
s ponAbe2.chr8              59038098 12 + 153482349 AGTTTAATTGAC
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48111511 12 + 100215132 AGTTTAATTGAC
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190752381 12 - 190850796 AGTTTAATTGCC
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14115856 12 -  14256875 AATTTACTTGCC
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3014805  8 -  10937097 ACT----TTGTC
i orcOrc1.KB316932         C 0 I 2
s panHod1.KE114653           1499654 12 -   2937107 AATTTAATTGCC
i panHod1.KE114653         C 0 I 2
s bosTau8.chr27             18215583 12 +  45407902 GATTTAATTGCC
i bosTau8.chr27            C 0 I 2
s oviAri3.chr26             17841782 12 +  44077779 AATTTAATTGCC
i oviAri3.chr26            C 0 I 2
s capHir1.chr27             17927287 12 +  44118849 AATTTAATTGCC
i capHir1.chr27            C 0 I 2
s equCab2.chr27             18742625 12 -  39960074 ACTTTAACTGCC
i equCab2.chr27            C 0 I 2
s felCat8.chrB1             20473152 12 + 206538554 ACTTGAATTGCC
i felCat8.chrB1            C 0 I 2
s odoRosDiv1.KB229312         746483 12 -   2017862 ggttcagttggt
i odoRosDiv1.KB229312      I 14 I 191
e canFam3.chr16             18190001 233 -  59632846 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chr3             144851680 80 + 204416410 I
e pseHum1.KB221293           1179931  0 -   1495300 I
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737334             56903 4702 -    565068 I
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5             230632068 10 - 304825324 I
e taeGut2.chrZ              13215714 90 +  72861351 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=98521.000000
s hg38.chr8_KI270814v1_alt     68261 34 +    141812 TG--AATTTGTCTAGGATGGGAGGGA---------TTAAATGAGG
s ponAbe2.chr8              59038110 34 + 153482349 TG--AATTTGTCTAGGATGGGAGGGA---------TTAAATGAGG
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48111523 34 + 100215132 TG--AATTTGTCTAGAGTGGGTGGGA---------TTAAATGAGG
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190752393 36 - 190850796 TGTTAATTTGACTGGGATGGAAGGGA---------TTAAACAAGG
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14115868 36 -  14256875 TGTTAATTTGACTGGGATGGAAGGGA---------TTAAATAAGG
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3014815 33 -  10937097 TG--AATTTGACTGGGACAGAAGAGATTAAACTGG----------
i orcOrc1.KB316932         I 2 C 0
s panHod1.KE114653           1499668 24 -   2937107 TG--AATTTGACTGGGACAGAAGAGA-------------------
i panHod1.KE114653         I 2 C 0
s bosTau8.chr27             18215597 24 +  45407902 TG--AATTTGACTAGGACAGAAGAGA-------------------
i bosTau8.chr27            I 2 C 0
s oviAri3.chr26             17841796 24 +  44077779 TG--AATTTGACTGGGACAGAAGAGA-------------------
i oviAri3.chr26            I 2 C 0
s capHir1.chr27             17927301 24 +  44118849 TG--AATTTGACTGGGACAGAAGAGA-------------------
i capHir1.chr27            I 2 C 0
s equCab2.chr27             18742639 34 -  39960074 TG--AATTTGACAGGGATAAAAGGGA---------GTAAACTGAG
i equCab2.chr27            I 2 C 0
s felCat8.chrB1             20473166 34 + 206538554 TG--AATTTGATCGAGACAGAAGAAA---------TTAATCTAGG
i felCat8.chrB1            I 2 C 0
s odoRosDiv1.KB229312         746686 34 -   2017862 TG--AATTTGACTGGGACAGAAGAAA---------TTAATCTAGG
i odoRosDiv1.KB229312      I 191 C 0
e canFam3.chr16             18190001 233 -  59632846 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chr3             144851680 80 + 204416410 I
e pseHum1.KB221293           1179931  0 -   1495300 I
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737334             56903 4702 -    565068 I
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5             230632068 10 - 304825324 I
e taeGut2.chrZ              13215714 90 +  72861351 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=275749.000000
s hg38.chr8_KI270814v1_alt     68295 60 +    141812 TTTGAAATGA--AATAGAAATTG---------------CTAAACTCCTGACTAGACAATTACTGCCATCCATCTCTT
s ponAbe2.chr8              59038144 60 + 153482349 TTTGAAATGA--AATAGAAATTG---------------CTAAACTCCTGACTAGACAATTACTGCCATCCATCTCTT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48111557 60 + 100215132 TTTGAAATGA--AATAGAAATTG---------------CTAAACTCCTGACTAGACAATTACTGCCATCCATCTCTT
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190752429 60 - 190850796 TTTGGAAGGA--AATAGGAATTG---------------TTAAACTCATGACTAGGCAATAACTGCCACCCTCTTCTT
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14115904 60 -  14256875 TTTGAAAGGA--AACAGGAATTG---------------TTAAACTCCTGACTAGGCAATAACTGCCATCCTCTTCTT
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3014848 57 -  10937097 ---ACTCTGG--ACTTAAAGCTA---------------CTAGACTCTCGACAAGGCAATAACTACCATCCATCTCTT
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1499692 57 -   2937107 ---AAGCTGG--ACTTAAAGCCT---------------CTAGACTCTTGACAAGGCAATAACTACCATCCATCTCTA
i panHod1.KE114653         C 0 C 0
s bosTau8.chr27             18215621 57 +  45407902 ---AAGCTGG--ACTTAAAGCCT---------------CTAGACTCTTGACAAGGCAATAACTACCATCCATCTCTA
i bosTau8.chr27            C 0 C 0
s oviAri3.chr26             17841820 57 +  44077779 ---AAGCTGG--ACTTAAAGCCT---------------CTAGACTCTTGACAAGGCAATAACTACCATCCATCTCTA
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17927325 57 +  44118849 ---AAGCTGG--ACTTAAAGCCT---------------CTAGACTCTTGACAAGGCAATAACTACCATCCATCTCTA
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18742673 60 -  39960074 CTTAACAGGA--AACAGAAGTTG---------------CTGGACTCTTGACAGGGCAATAACTGCCATCCATCTCTT
i equCab2.chr27            C 0 C 0
s felCat8.chrB1             20473200 60 + 206538554 CTTAACAGGA--AACAGAAGTTA---------------CTGGACTCTTGACAAGCCAATAACTACCATCCATCTTTT
i felCat8.chrB1            C 0 C 0
s canFam3.chr16             18190234 77 -  59632846 TTTGACTGGAACAACAGAAATTAATCTGGGCTTAACTCTTGGACTCTCGACAAGATAATAACTGCCATCCATCTTTT
i canFam3.chr16            I 233 C 0
s odoRosDiv1.KB229312         746720 60 -   2017862 CTTAACAGGA--AACGGAAGTTA---------------CTGGACTCTTGACAAGGCAGTAACTGCCATCCCTTTTTT
i odoRosDiv1.KB229312      C 0 I 210
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chr3             144851680 80 + 204416410 I
e pseHum1.KB221293           1179931  0 -   1495300 I
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737334             56903 4702 -    565068 I
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5             230632068 10 - 304825324 I
e taeGut2.chrZ              13215714 90 +  72861351 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=50018.000000
s hg38.chr8_KI270814v1_alt     68355 9 +    141812 ACATGTGCC
s ponAbe2.chr8              59038204 9 + 153482349 ATATGTGCC
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48111617 9 + 100215132 ATATGTGCC
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190752489 9 - 190850796 ATATCGGCC
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14115964 9 -  14256875 TTATCGGCC
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3014905 9 -  10937097 ATATCTGCC
i orcOrc1.KB316932         C 0 I 1
s panHod1.KE114653           1499749 9 -   2937107 ACATCTGCC
i panHod1.KE114653         C 0 I 566
s bosTau8.chr27             18215678 9 +  45407902 ACATCTGCC
i bosTau8.chr27            C 0 I 1
s oviAri3.chr26             17841877 9 +  44077779 ACATCTGCC
i oviAri3.chr26            C 0 I 565
s capHir1.chr27             17927382 9 +  44118849 ACATCTGCC
i capHir1.chr27            C 0 I 530
s equCab2.chr27             18742733 9 -  39960074 ATGTCTGCC
i equCab2.chr27            C 0 I 12
s felCat8.chrB1             20473260 9 + 206538554 ATGTCTGCT
i felCat8.chrB1            C 0 I 12
s canFam3.chr16             18190311 9 -  59632846 ATATCTGCT
i canFam3.chr16            C 0 I 12
s odoRosDiv1.KB229312         746990 9 -   2017862 ATATCTGCT
i odoRosDiv1.KB229312      I 210 I 12
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chr3             144851680 80 + 204416410 I
e pseHum1.KB221293           1179931 0 -   1495300 I
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737334             56903 4702 -    565068 I
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5             230632068 10 - 304825324 I
e taeGut2.chrZ              13215714 90 +  72861351 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=4576.000000
s hg38.chr8_KI270814v1_alt     68364 2 +    141812 CC
s ponAbe2.chr8              59038213 2 + 153482349 CC
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48111626 2 + 100215132 CC
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190752498 2 - 190850796 CC
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14115973 2 -  14256875 CC
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3014915 1 -  10937097 -C
i orcOrc1.KB316932         I 1 I 16
s bosTau8.chr27             18215688 1 +  45407902 -T
i bosTau8.chr27            I 1 I 252
s equCab2.chr27             18742754 2 -  39960074 TC
i equCab2.chr27            I 12 I 4
s felCat8.chrB1             20473281 2 + 206538554 TC
i felCat8.chrB1            I 12 I 4
s canFam3.chr16             18190332 2 -  59632846 TC
i canFam3.chr16            I 12 I 4
s odoRosDiv1.KB229312         747011 2 -   2017862 TC
i odoRosDiv1.KB229312      I 12 I 4
e oviAri3.chr26             17841886 565 +  44077779 I
e panHod1.KE114653           1499758 566 -   2937107 I
e capHir1.chr27             17927391 530 +  44118849 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chr3             144851680 80 + 204416410 I
e pseHum1.KB221293           1179931 0 -   1495300 I
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737334             56903 4702 -    565068 I
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5             230632068 10 - 304825324 I
e taeGut2.chrZ              13215714 90 +  72861351 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=180687.000000
s hg38.chr8_KI270814v1_alt     68366 43 +    141812 T------------AAATA----AGCAC------TAACAGTGCCTTGGGCAGAGACCCCAGTG--ACT
s ponAbe2.chr8              59038215 43 + 153482349 T------------AAATA----AGCAC------TAACAGTGCCTTGGGCAGAGACCCCAGTG--ACT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48111628 43 + 100215132 T------------AAATA----AGCAC------TAACAGTGCCTTGAGCAGAGACCCCAGTG--ATT
i nomLeu3.chr16            C 0 I 266
s calJac3.chr3             190752500 59 - 190850796 TACCTTGGGCCCCAAATAACTCAGCAC------TAACAGTGCCTTGAGCAGAGGCTCCAGTG--ACT
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14115975 59 -  14256875 TACCTTGGGCCCCAAATAACTCAGCAC------TAACAGTGCCTTGAGCAGAGGCTCCAGTG--ACT
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3014932 43 -  10937097 ----------------TAACTCAGCAC------TAATAATGCCTTGACCAGAGATCCCAGGG--ACT
i orcOrc1.KB316932         I 16 C 0
s panHod1.KE114653           1500324 43 -   2937107 ----------------TAACTCAGCAC------TAATAATGCCTTGACCAGAGATGCCAGAG--ACT
i panHod1.KE114653         I 566 C 0
s bosTau8.chr27             18215941 43 +  45407902 ----------------TAACTCAGCAC------TAATAATGCCTTGACCAGAGATGCCAGGG--ACT
i bosTau8.chr27            I 252 C 0
s oviAri3.chr26             17842451 43 +  44077779 ----------------TAACTCAGCAC------TAATAATGCCTTGACCAGAGATGCCAGAG--ACT
i oviAri3.chr26            I 565 C 0
s capHir1.chr27             17927921 43 +  44118849 ----------------TAACTCAGCAC------TAATAATGCCTTGACCAGAGATGCCAGAG--ACT
i capHir1.chr27            I 530 C 0
s equCab2.chr27             18742760 42 -  39960074 ----------------TAACTCAGCAC------TAACAATGCCATGACTAG-GACCCCAGTG--ACG
i equCab2.chr27            I 4 C 0
s felCat8.chrB1             20473287 44 + 206538554 ----------------TAAGTCAGAAC------TAGAAACACCTTGAGCAAAGATCCCAGTCT-AAT
i felCat8.chrB1            I 4 C 0
s canFam3.chr16             18190338 45 -  59632846 ----------------TAACTCAGGAC------TAGAAATTCTTTGACCAGAGATCCCAATCTAAAT
i canFam3.chr16            I 4 C 0
s odoRosDiv1.KB229312         747017 50 -   2017862 ----------------TAACTCAGCACTAGAAATAGAAATACCTTGACCAGAGACCTCAGTCT-AAT
i odoRosDiv1.KB229312      I 4 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chr3             144851680 80 + 204416410 I
e pseHum1.KB221293           1179931  0 -   1495300 I
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737334             56903 4702 -    565068 I
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5             230632068 10 - 304825324 I
e taeGut2.chrZ              13215714 90 +  72861351 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=1041006.000000
s hg38.chr8_KI270814v1_alt     68409 269 +    141812 ACCTAATAGTAGCCTTCAAGAGCATCACTTCCCACTCTCCTGCCCTGCCTCACTTTCCTCCTAGGTCTTATGGGAT------GGATGATAGATGTCATTC--------CCTGGTTCCCTAACGCTCAAGTCTAGCCCCTCATTTCCTGGCAAGCATCAAGCTTGATTGTGTCTGTAACCTCTCAGAAGTCAGACCTCAGAAGTGTGCTTTTCTGGGAAATCGGGGTCAGGGAGGAAAGAAGGAGGGAATAAagacattgtaatagatttatatatatcattgt
s ponAbe2.chr8              59038258 269 + 153482349 ACCTAATAGTAGCCTTCAAGAGCATCACTTCCCACTCTCCTGCCCTGCCTCACTTTCCTCCTAGGTCTTATGGGAT------GGATGGTAGATGTCATTC--------CCTGGTTCCCTAACGCTCAAGTCTAGCCCCTCATTTCCTGGCAAGCATCAAGCTTGATTGTGTCTGTAACCTCTCAGAAGTCAGACCTCAGAAGTGTGCTTTTCTGGGAAATCAGGGTCAGAGAGGAAAGAAGGAGGGAATAAAGACATTGTAATAGATTTATATATATCATTGT
i ponAbe2.chr8             C 0 C 0
s calJac3.chr3             190752559 252 - 190850796 GCCTAAAAGTGGCCTTCAAGAGCAGCACCTCCCA--------------CTCGCTTTCCTCCTAGGCCTTATCAGAG------GGATGACAGATGCCATTC--------CCTGGTTCCATAACACTCAAGTCTACCCCCTCATATTCTAGCAAGAATCCAGCTTCACTGTGTGTCTAACCTCTCAGGAGTCAGACCTCAGAAGTACACCTTGGTGGAAATTCAGaggcagggaggaaagaaggaaggaaagaagACCCTGACCTGGAttcatacacattat---
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14116034 265 -  14256875 GCCTAAAAGTGGACTTCCAGGGCAGCACTTTCCACTCTGCTGCCCTGCCTCGCTTTCCTCCTAAGCCTTATCAGAG------GGATGACAGATGCCATTC--------CCTGGTTCCATAACACTCAAGTCTACCACCTCATATTCTAGCAAGAATCCAGCTTCACTGCATGTCAAACCTCTCAGGAGTCAGACCTCAGAAGTACACCTTGGTGGAAATTCAGAGGCAGGGAGGAAGGAAGG-AGGAAAGAAGACCCTGACCTGGATCCacacacattac---
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3014975 270 -  10937097 GCCTA--AGGAGCCTGC-AGAGCATCATTTCCCACTCTCCTGACCTGCCTCACTTTCCTCCTAGGACTTGCAGGGGCCTCCAGCATCACAGATACCATTC--------CCTAGTTTCCTAACACCCAAGTCCAGCTCCTCATTTCCTAGCAAGCACCAAGCTTGATTGTGTACCTAACCTCTCAGAAGTCAAACCTCAG-CATAAGCCTTGATGGAAAATCAGGGGC-AGTTAAAGAGAAGGAGGGAAAGAaggcactgtactggatttacacacatgaccac
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1500367 270 -   2937107 GCCCA--GGAAGCCTTC-AGAGCATCACTTCCCACTCTCCTGACCTGCCTCACTTTCCTTGTAGGACTTACAGGGCCCTCCAGCATCACAGATACCATTC--------CCCAGTGTGCTAACATCCAAGTCTAGCTCCTCACTCTCTAGCAAGCACCAAGCTTGATTGTGTATCTAACCTCTCAGAAGTC-AACCTCAG-AGTGAGCCTGGATGGAAAAACAGGGGCAAAGAAAATAGAAGGAGGGAAAGAaggcactgtagtggatttacacacgtgaccac
i panHod1.KE114653         C 0 C 0
s bosTau8.chr27             18215984 270 +  45407902 GCCCA--GGGAGCCTTC-AGAGCATCACTTCCCACTCTCCTGACCTGCCTCACTTTCCTTGTAGGACTTGCAGGGCCCTCCAGCATCACAGATACCATTC--------CCCAATGTCCTAACATCCAAGTCTAGCTCCTCACTCTCTAGCAAGCACCAAGCTTGATTGTGTATCTAACCTCTCAGAAGTC-AACCTCAG-AGTAAGCCTGGATGGAAAAACAGGGGCAAGGAAAATAGAAGCAGGGAAAGAaggcactgtagtggatttacacacatgaccac
i bosTau8.chr27            C 0 C 0
s oviAri3.chr26             17842494 270 +  44077779 GCCCA--GGAAGCCTTC-AGAGCATCACTTCCCACTCTCCTGACCTGCCTCACTTTCCTTGTAGGACTTACAGGGCCCTCCAGCATCACAGATACCATTC--------CCCAGTGTGCTAACATCCAAGTCTAGCTCCTCACTCTCTAGCAAGCACCAAGCTTGATTGTGTATCTAACCTCTCAGAAGTC-AACCTCAG-AGTGAGCCTGGATGGAAAAACAGGGGCAAGGAAAACAGAAGGAGGGAAAGAaggcactgtagtggatttacacacgtgaccac
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17927964 270 +  44118849 GCCCA--GGAAGCCTTC-AGAGCGTCACTTCCCACTCTCCTGACCTGCCTCACTTTCCTTGTAGGACTTACAGGGCCCTCCAGCATCACAGATACCATTC--------CCCAGGGTGCTAACATCCAAGTCTAGCTCCTCACTCTCTAGCAAGCACCAAGCTTGATTGTGTATCTAACCTCTCAGAAGTC-AACCTCAG-AGTGAGCCTGGATGGAAAAAGAGGGGCAAGGAAAACAGAAGGAGGGAACGAaggcactgtagtggatttacacacgtgaccac
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18742802 279 -  39960074 GCCTA--AGTGCCCTTCAAGAGCATCACTTGCTACTCTCCTGACCTGCCTCACTTTCCTCCCAGGCCTTACAGGGGCCTCCAGCATCATCGATACCCCCCGCCCCCCACCCAGTTCCCTAACACCA-AGTCTAGCTCCTCAACTTCCAGCAAGCATCATGCTTGATTGTGTGTCTAACCTCTTAGAAGTCATACCTCAG-AGTAAGCTCTGATAGGGAATCAGCAACAGGGGAGAGAGAAGGAGGGAAAGAagacattgtactggatttatacccatgactgc
i equCab2.chr27            C 0 C 0
s felCat8.chrB1             20473331 262 + 206538554 GCTTA--AGTGGCCTTCAAAAGAATCACTTC-------CCTGATCTGCCTCGCTTTCCTCCTAGA-TTTCCAAGGGCCTCTGGCATCATGAATACCATTC--------CCTGGTTCCCTAACACCC--ATCTTGCTCATTATTTTCTAGTAAGCGTCAAGCTTGATTGTGTGTCTAACCTTTGAGAGGTCAGACCTCAT-AGTAAGCCTTGATGAGAAATCAGGATCAGGGAAGAGAGAAGGAGGGATAGAATATACTACACTGGAtttatgtacattaacac
i felCat8.chrB1            C 0 C 0
s canFam3.chr16             18190383 195 -  59632846 GCCTT--TATGGCCTTCCAAAGCATCACTTCCCAC---TTTGATCTGCCTCACTTTCC-CCTAGGCCTTAAAGGGTCTGCCAGCATAATAGTTACTGTTT--------CCTGGTTCCCTAACACCA--------------------------------------------------------------------------AGTAAGCCCTGAAGAGAAACCAGGAGCAGGTAAGAGGGAAGAAAGGAAAGAATACGTTATACAGGAtttatatacatgatcat
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         747067 272 -   2017862 ACCTA--AGTGGCCTTCAAAATCATCACTTCCCACTCTTCTGATCTACCTCACTTTCCTCCTAGGCTTTACAGGGGCCTCCAGCATCATAGTTACCATTC--------CCTGGTTCCCTAACACCCAAGTCTAGTTCCTCATTTTCTAGTAAACATCAAGCTTGATTGTGTGTCTAACCTTTGAGAGGTCAGACCTCAT-AGTAAGCCTTGATGAGAAATCAGGGGCAGGGAAGAGGGAAGGAGGGAAAGAATAcactgtaccggattcatatacatgatcac
i odoRosDiv1.KB229312      C 0 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chr3             144851680  80 + 204416410 I
e pseHum1.KB221293           1179931   0 -   1495300 I
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737334             56903 4702 -    565068 I
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5             230632068  10 - 304825324 I
e taeGut2.chrZ              13215714  90 +  72861351 I
e nomLeu3.chr16             48111671 266 + 100215132 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=1727725.000000
s hg38.chr8_KI270814v1_alt     68678 423 +    141812 aactcatccacacaacaatcctgtaaggtgtg-gccactgtactcagaaaact-gaggctcaaagagattgagtaacttacc-aaaacttcacatgt--actaaaagtggagcctagatttcaaacacctgtaagactctgaaatctatattagctcttCTATACATGAGCCtaaaatgcaactgtaaaccaataagactgacttcctcttgaggcttatcactagctctgaa-----------tagaagcattcccaa-atgctgtctaagcaattgttgcgtcatggg------------------------------------------------------------------------------------aataagttgataaattctcagggttacatactCCTTTAGATGCACTGGAA-CTT-TTCTCAGTATGTAGAATCAAGTGTAAGGAAAA--AGGATTT-GAAGGGGAAGGGGA--GAAATAA---------------AACAGGACTGAGCCTTACACGTGTTGACCAGAACAGA
s ponAbe2.chr8              59038527 412 + 153482349 AACTCATCCACACAACAATCTTGTAAGGTGTGTGCCACTGta-------------aggctcaaagagattgagtaacttatc-aaaacttcacatgt--actaaaagtggagcctagatttcaaacacctgtaagactctgaagtctattttagctcttCTATACATGAGCCtaaaatgcaactgtaaaccaataagactgacttcctcttgaggcttatcactagctctgaa-----------taggagcattcccaa-atactgtctgagcaatcgttgcgtcatggg------------------------------------------------------------------------------------aataagttgataaattctcagggttacatactCCTTTAGATGCACTGGAA-CTT-TTCTCAATACATAGAATCAAGTGTAAGGAAAA--AGGATTT-GAAGGGGAAGGGGA--GAAATAA---------------AACAGGACTGAGTCTTACACGTGTTGACCAGAACAGA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48111937 421 + 100215132 AGCCCatccatacaacaatcctgtaaggtgtgtgccactgtactcagaaaact-gaggctcaaagagattgagtaacttatc-aaaacctcacatgt--actaaaagtggag-ctagatttcaaacacctgtaaga--ctgaagtctatgttAGCCCTTCTATACATGAGCCTAAAAAGCAactgtaaaccgataagactgacttcctcttgaggcttatcaatagctctgaa-----------tagaagcattcccaa-atgctgtctgagcaatcgttgcgtcatggg------------------------------------------------------------------------------------aataagttgataaattctcagggttacatactCCTTTAGATGCACTGGAA-CTT-TTCTCAATACATAGTTTCAAGTATAAGGAAAA--AGGATTT-GAAAGGGAAGGGGA--GAAATAA---------------AACAGGACTGAGCCTTACACGTGTTGACCAGAACAGA
i nomLeu3.chr16            I 266 C 0
s calJac3.chr3             190752811 416 - 190850796 aattcatccacataacaatcctgtaaggaatgtaccattgtactcagaaaact-gagactcaaggagattgagtaacttgtctaagatctcacaggt--actgagtgtagagtctggattccaaa-gcctgtgaga--ctgacatccaTGTTAG---TTCTATACATGAGCCCAAAACGCAGCTGTAAACCAGCAAGACTGACTTCCTCTTGCAGCTTATCACTAGCTCTGAA-----------TAGAAGAATTATCAAAATATTTTATAAGCAATAATAGCCTCATGGG------------------------------------------------------------------------------------AATAAGTTGACAAGTTCCTAGCAT----TCCTGCTTTAGATCCACTTGAA-CTT-TTCTCCATATATAGAGTCAAGAATAAGAAAAA--AGGATCT-AAAGGGGAAGGGGA--GAAATAA---------------AACGGGACTAAGCCTTATACTTGTTGACCAGAACAGA
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14116299 503 -  14256875 aattcatccacatgacaatcctgtaagggatgtaccattgtactcagaaaatt-gagactcaaggagactgagtaacttgtctaagacctcacaggt--actgagcacagagcctggattccaaa-acctgtgaga--ctgaaatccatgttagttcttctataAGTGAGCCCAAAACACAGCTGTAAACCAGCAAGACTGACTTCCTCTTGCAGCTTATCACTAGCTCTGAA-----------TAGAAGAATTCTCAACATGCTTTATAAGCAATAATAGCCTCATGGGAATAAGTTGACAATAATAGCCTCATGGGAATAAGTTGACAATAATAGCCTCATGGGAATAAGTTGACAATAATAGCCTCATGGAAATAAGTTGACAAGTTCCCAGCAT----TACTGCTTTAGATGCACTTGAA-TTT-TTCTCCACATACAGAGTCAAGAATAAGAAAAA--AGGATCT-AAAGGGGAAGGGGA--GAAATAA---------------AACGGGACTGAGACTTATACTTGTTGACCGGAACAGA
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3015245 384 -  10937097 atttaatccacataccaaccctataaggtatgtgttgttgta-cccagaaaatggagactcaaagagcttaaataatttgtctgaaacttcacatctctactgagaacagagcctggattctgaacAGTT--------------------------------------------AAAtgtagct-taaaccagtaagactgacttcatcacaagtcttatcactagctctgaagaccaatccaatagaagaatcttcaaaatgctttatcagcaatggtagcatcCAGG-----------------------------------------------------------------------------------------------------------GT----TACTACTTGGGACTCATTTGAG-TTTCTTCTCTATACATAAAGTC-AGAGTGAGGAAAA--AGAATCT-AAAGAGGAAGGGGCGGGAAGGGGTGGGGGGTAGGGGCCAATAGGGCTAAGGCTTACACAAGTGAACCCTAACAGA
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1500637 447 -   2937107 atttcatccacataccaaccctataaggtatgtgttgctgca-agcagaaaat-gaggttcaaagagcttaagtaatttgcctaagatttcgcatgtctactgaaaacagagcctggattctgaatagttacgagacttcaaagtccacgttagttccactgtaTGTGACCCTAAAAGGCAGCT-taaatcagtaaaactgacttcatcacacatcttatcaccagctctgaagaccaagccaacagaagaatcttcaaaatgctttatgagcaatggtagcatcctggg------------------------------------------------------------------------------------aataagtTGATAAATGTGCACAGT----TGGTACCTGTGATTCACTTGAG-CTTCTTCTGTAAACGTGAGGTC-AGAGTAAGGAAAA--AGAATCT-AAAGGGGAAGGGTT--GACGTGGGTGGGAGTGAAGGTCAATAAGGCTGAGCCGCATACAAGTCAACTT-GACAGA
i panHod1.KE114653         C 0 C 0
s bosTau8.chr27             18216254 447 +  45407902 atttcatccacataccaaccctataaggtatgtgttgctacg-accagaaaat-gaggttcaaagagcttaagtaatttgcctaagacttcacatgtctactgagaacagagcctggattctgaatagttatgagacttcaaaatccacgttagttccactgtaTGTGACCCTAAAAGGCAGCT-taaatcagtaagactgacttcattgcacatcttatcaccagctctgaagaccaagccaacagaaaaatcttcaaaatgctttatgagcaacggtagcatcctggg------------------------------------------------------------------------------------aataagtTGATAAATGTGCGCAGT----TAGTACCTGTGACTCACTTGAG-TTTCTTCTCTAAACGTGAAGTC-AGAGCAAGGAAAA--AGAATCT-AAAGAGGAAGGGCT--GAGGTAGGTGGGAGTGCAGGCCAATAAGGCTGAGCCGCATACAAGTCAACCC-AACAGA
i bosTau8.chr27            C 0 C 0
s oviAri3.chr26             17842764 447 +  44077779 atttcatccacataccaaccctataaggtatgtgttgctgca-accagaaaat-gaggttcaaagagcttaagtaatttgcctaagatttcacatgtctactgagaacagagcctggattctgaatagttatgagacttcaaagtccacgttagttccactgtaTGTGACCCTAAAAGGCAGCT-taaatcagtaagactgacttcatcacacatcttatcaccagctctgaagaccaagacaaaagaagaatcttcaaaatgttttataagcaatggtagcatcctggg------------------------------------------------------------------------------------aataagtTGATAAATGTGCACAGT----TGGTACCTGTGACTCAGTTGAG-CTTCTTCTCTAAACGTGAGGTC-AGAGTAAGGAAAA--AGAATCT-AAAGGGGAAGGGTT--AACGTGGGTGGGAGTGAAGGTCAATAAGGCTGAGCCGCATACAAGTCAACTC-AACAGA
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17928234 447 +  44118849 atttcatccacataccaaccttataaggtatgtgttgctgca-accagaaaat-gaggttcaaagagcttaagtaatttgcctaagatttcacatgtctactgagaacagagcctggattctgaatagttatgagacttcacagtccatgttagttccactgtaTGTGACCCTAAAAGGCAGCT-taaatcagtaagactgacttcatcacacatcttatcaccagctctgaagaccaagccaacagaagaatcttcaaaatgctttatgagcaatggtagcatcctggg------------------------------------------------------------------------------------aataagtTGGTAAATGTGCACAGT----TGGTACCTGTGACTCAGTTGAG-CTTTTTCTCTAAACGTGAGGTC-AGAGTAAGGAAAA--AGAATCT-AAAGGGGAAGGGTT--GATGTGGGTGGGAATGAAGGTCAATAAGGCTGAGCCGCATACAAGTCAACTC-GACAGA
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18743081 429 -  39960074 atttaatccacacaataaccctacacagtatg---tcttgtatccagaaaact-gaggcttacagagcttaaataacttgtctgaaatctcacatctctattgacagcagatcctggattccaaacagtcatgggactctgaagtccatgtt----ctACTATATGTGACCCTAAAATGCAGCT-TAAACCAGTAGGACCAACATCATCA-AGGGGTTGTCTCCAgctctgaagaccaatacaacagaagaatcttcaaaatactttatgagcaatggtagtgtcatgcg------------------------------------------------------------------------------------aataagttgatagatttccagggt----tacaacttGAGACTCATTTGAG-TTTCTTTTTTGGACATGGAGTC-AGAGTAAGGAAAA--AGGATCTGAAGAGGATAGGAGG--G-------------GAGGCACAAAGAGGCCCAAGCTTTACACGTGTGAACCAGAACAGA
i equCab2.chr27            C 0 C 0
s felCat8.chrB1             20473593 430 + 206538554 atgtaatccacacaacaaccctataaagtctg---tattgta-ccagaaaact-caggctcggagagcttaaatatcttgtctaaaacttcacatctctactgagggcagagcctggattctagacagttatgggactctgaagtccatgttagttccactataTGTGACCCT-AAATGTAGCT-TACACCAGTAAGATCAACTTCATCATAGGGCTTATCACTAGCTTTGAAGACCAATTCAGT---AGAATTTTCAAAATGCTTTATGAGCAATTATAGTGTCATGAG------------------------------------------------------------------------------------AATAATTTGATAAATTTTCAGGGT----CACTATTTGAGAGTCATTTGAG-TTTCTTCTCTATATATGGAGTC-TGAGTAAGGGAAAAAAAGATCT-AAAAGGGTGGCGGC--A-------------GGGGTGCTAACAGGGCTGAACCTTACACATGTTGACCAGAACAGA
i felCat8.chrB1            C 0 C 0
s canFam3.chr16             18190578 432 -  59632846 gcttcattcacacaacaaccctaaaaagtatgtgatgttgta-ccacaaaact-gaggctcaaagagcttaaataacttgcctaaaacctcacatccccactgggagaagaacctggattctagacaattatgagaccatgaagtccatgttagtcccactataTGTGATCCTAAAATGCGGTT-TATATCAGTAAGATCAGCTTCATCATAAggcttatcactagctttgaaaaccaattcaatagaagaatcttcaaaatgctttatgagcaattatagtgtcatgag------------------------------------------------------------------------------------aataagttgataaatttccagggt----tgctg-ttgagagtcatttggGTTTTTTTCTCCATATATGGAGT--TGAGTAAGGAAAA----GATCT-AAAAGGATGAGAGC--A------------GAGGACGCTAACA-GGCTGAGCCTTATACATGCAGACCAGAACAGA
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         747339 431 -   2017862 atttcatccacacaacaaccctataaagtatgtgttgttgta-acagaaaact-gaggctcaagaagcttaaataactcttctaaaatcttatatctgcactgagagcagagcctgaattctagacagttatgagaccctgaagtccatgttagtcccactataTGTGACCCTAAAATGC------AAACCAGTAAGATCAACTTCAACATTGGACTTATCAGtagctttgaagaccaattcaatagaagaatcttcaaaatgctttttgagcacttatagtatcatcag------------------------------------------------------------------------------------aataagttgataaatttccagggt----aactatttgaaagtcaTTTGAG-TTTTTTCTCCATATATGGAATC-TGAGTAAGAAAAA-AGGGACCT-AAAAGGATGGGGGC--A------------TGGGGCTCTAACAGGGCTGAACC-TACACGTGTCAACCAGAACAAA
i odoRosDiv1.KB229312      C 0 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321356 629 +  74947036 T
e anoCar2.chr3             144851680  80 + 204416410 I
e pseHum1.KB221293           1179931   0 -   1495300 I
e zonAlb1.KB913045          12582078 625 +  16390125 T
e colLiv1.KB375358           1019695 647 +   1462937 T
e allMis1.JH737334             56903 4702 -    565068 I
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr1              24067632 655 + 195276750 T
e geoFor1.JH739914           5157808 631 -   7168866 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB743807              6030 614 +     81650 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556589           7668572 10921 -   7952740 I
e monDom5.chr5             230632068  10 - 304825324 I
e taeGut2.chrZ              13215714  90 +  72861351 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=254139.000000
s hg38.chr8_KI270814v1_alt     69101 25 +    141812 TAATGTTTGGATTTTCTTTAC-TTTT-
s ponAbe2.chr8              59038939 26 + 153482349 TAATGTTGGGATTTTCTTTACTTTTT-
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48112358 25 + 100215132 TAATGTTGGGATTTTCTTTAC-TTTT-
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190753227 24 - 190850796 TAACATTGGGATTTTTCTTAC--TTT-
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14116802 24 -  14256875 TAATGTTGGGATTTTTCTTAG--TTT-
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3015629 24 -  10937097 TAATTTGGGGATTTTTCTTCC--TTT-
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1501084 24 -   2937107 TAATTTGGGGATTTTTCTTCC--TTT-
i panHod1.KE114653         C 0 C 0
s bosTau8.chr27             18216701 24 +  45407902 CAATTTGGGGGTTTTTCTTCC--TTT-
i bosTau8.chr27            C 0 C 0
s oviAri3.chr26             17843211 24 +  44077779 TAATTTGGGGATTTTTCTTCC--TTT-
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17928681 24 +  44118849 TAATTTGGGGATTTTTCTTCC--TTT-
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18743510 24 -  39960074 TAATGTTGGGATTTTCCTTCC--TTT-
i equCab2.chr27            C 0 C 0
s felCat8.chrB1             20474023 24 + 206538554 TAACGTTAGAATTTTATTTCT--CTT-
i felCat8.chrB1            C 0 C 0
s canFam3.chr16             18191010 22 -  59632846 TAATGTTAGAATTT--TCTCT--CTT-
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         747770 24 -   2017862 TAATGTTAGAATTTTCTCTCT--CTT-
i odoRosDiv1.KB229312      C 0 C 0
s colLiv1.KB375452           1389035 25 +   4234233 TAACGTTTGGATTTTACTTAC--TTTT
i colLiv1.KB375452         n 647 C 0
s ficAlb2.chrZ              55056009 25 +  59856998 TAATGTTTGGATTTTACTTAC--TTTT
i ficAlb2.chrZ             n 629 C 0
s zonAlb1.KB913240            786582 25 -    852449 TAATGTTTGGATTTTACTTAC--TTTT
i zonAlb1.KB913240         n 625 C 0
s geoFor1.JH739942           1278491 25 +   5104860 TAATGTTTGGATTTTACTTAC--TTTT
i geoFor1.JH739942         n 631 C 0
s pseHum1.KB221303            458694 25 -   1055857 TAATGTTTGGATTTTACTTAC--TTTT
i pseHum1.KB221303         n 0 C 0
s melUnd1.JH556568           2078029 25 +   4296882 TAATGTTTGGATTTTACTTAC--TCTT
i melUnd1.JH556568         n 10921 C 0
s anaPla1.KB742960            138923 25 +    531124 TAATGTTTGGATTTTACTTAC--TTTT
i anaPla1.KB742960         n 614 I 1155
s galGal4.chrZ              23193453 25 -  82363669 TAACGTTTGGATTTTACTTAC--TTTT
i galGal4.chrZ             n 655 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e anoCar2.chr3             144851680 80 + 204416410 I
e allMis1.JH737334             56903 4702 -    565068 I
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e melGal1.chr1              24929366 674 + 204065131 T
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e monDom5.chr5             230632068 10 - 304825324 I
e taeGut2.chrZ              13215714 90 +  72861351 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=124418.000000
s hg38.chr8_KI270814v1_alt     69126 14 +    141812 TTCCCAGAGAAATC
s ponAbe2.chr8              59038965 14 + 153482349 TTCCCAGAGAAATC
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48112383 14 + 100215132 ATCCCAGAGAAATC
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190753251 14 - 190850796 CTTCCAGACAAATC
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14116826 14 -  14256875 CTTCCAGACAAATC
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3015653 14 -  10937097 TTTCCAGATAAATC
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1501108 14 -   2937107 TCTCCAGATAAATC
i panHod1.KE114653         C 0 C 0
s bosTau8.chr27             18216725 14 +  45407902 TCTCCAGATAAATC
i bosTau8.chr27            C 0 C 0
s oviAri3.chr26             17843235 14 +  44077779 TCTCCAGATAAATC
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17928705 14 +  44118849 TCTCCAGATAAATC
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18743534 14 -  39960074 TTTCCAGACAAATT
i equCab2.chr27            C 0 C 0
s felCat8.chrB1             20474047 14 + 206538554 TTTCCAGACAAATC
i felCat8.chrB1            C 0 C 0
s canFam3.chr16             18191032 14 -  59632846 TTTCCAGACAAATC
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         747794 14 -   2017862 TTTCCAGACAAATC
i odoRosDiv1.KB229312      C 0 C 0
s colLiv1.KB375452           1389060 14 +   4234233 CCCTAATTCAGATC
i colLiv1.KB375452         C 0 C 0
s ficAlb2.chrZ              55056034 14 +  59856998 TCCTAATTCAGATC
i ficAlb2.chrZ             C 0 C 0
s zonAlb1.KB913240            786607 14 -    852449 TCCTAATTCAGATC
i zonAlb1.KB913240         C 0 C 0
s geoFor1.JH739942           1278516 14 +   5104860 TCCTAATTCAGATC
i geoFor1.JH739942         C 0 C 0
s pseHum1.KB221303            458719 14 -   1055857 TCCAAATTCAGATC
i pseHum1.KB221303         C 0 C 0
s melUnd1.JH556568           2078054 14 +   4296882 TCCTAGTTCAGATC
i melUnd1.JH556568         C 0 C 0
s galGal4.chrZ              23193478 14 -  82363669 TCCTAATTCAGATC
i galGal4.chrZ             C 0 I 1096
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e anoCar2.chr3             144851680 80 + 204416410 I
e allMis1.JH737334             56903 4702 -    565068 I
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB742960            138948 1155 +    531124 I
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e monDom5.chr5             230632068 10 - 304825324 I
e taeGut2.chrZ              13215714 90 +  72861351 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=416881.000000
s hg38.chr8_KI270814v1_alt     69140 77 +    141812 GAATAAAGAAGTTTGTTTCTGTTACCTAAAATCAA-----------------CTCCCTCCCACCTTAAGTGGTTTTGTATAGAGCCCATAGTTG
s ponAbe2.chr8              59038979 77 + 153482349 CAATAAAGAAGTTTGTTTCTGTTACCTAAAATCAA-----------------CTCCTTCCCACCTTAAGTGGTTTTGTATAGAGCCCATAGTTG
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48112397 77 + 100215132 CAATAAAGAAGTTTGTTTCTGTTACCTAAAATCAA-----------------CTCCCTCCCACCTTAAGTGGTTTTCTATAGAGCCCATAGCTG
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190753265 90 - 190850796 CAATAAAGATGTCGGTTTCTGTTACCTAAAATCAACTTCAGAAGT----TTGCTCCCTCCCACTTTAAGTGGCTTTGCATAGAACCCACAATTG
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14116840 89 -  14256875 CAATAAAGATGTCTGTTTCTGTTACCTAAAATCAACTTGAGAGGT----TTGCTCCCTCCCACTTTAAGTGGCTTTGCA-AGTGCCCACAACTG
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3015667 89 -  10937097 CAATAAAGTTGTCTATATCTACTATCTAAAATCAATTTGAAATGT----GTTCCCCCTCCCACCTT-AGTGACTTTATAGACAGCACATAATTC
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1501122 94 -   2937107 CAATAAAGATGTCTGTATCTACTATCTAAAATCAATTTGAAAGGTCCCCCACCCCTCTCCCACCTTAAATGACTTTATAGCAAGCACATAATTC
i panHod1.KE114653         C 0 C 0
s bosTau8.chr27             18216739 94 +  45407902 CAATAAAGATGTCTGTATCTACTATCTAAAATCAATTTGAAAGGTCCCCCTCCCCCCTCCCATCTTAAGTGACTTTATAGTGAGCACATAATTC
i bosTau8.chr27            C 0 C 0
s oviAri3.chr26             17843249 94 +  44077779 CAATAAAGATGTCTGTATCTACTATCTAAAATCAATTTGAAAGGTCCCCCTCCCCTCTCCCATCTTAAATGACTTTATAGCAAGCACATAATTC
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17928719 94 +  44118849 CAATAAAGATGTCTGTATCTACTATCTAAAATCAACTTGAAAGGTCCCCCTCCCCTCTCCCATCTTAAATGACTTTATAGCAAGCACATAATTC
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18743548 90 -  39960074 CAATGAAGATGTCTGTATCTGTTATTTAAAACCAATTTAAAAGGT----TTGGCCCCTCCCACCTTAAGTGTCTTTGTATAGAGCACATAATTC
i equCab2.chr27            C 0 C 0
s felCat8.chrB1             20474061 90 + 206538554 CAATAAAGATGTCTGTATCTGTTATCTAAAATCACCTTGAAAGGT----TTGCCCCCTCCCACCTTAAGTGACTTTGTACAGAGAACATAATTC
i felCat8.chrB1            C 0 C 0
s canFam3.chr16             18191046 90 -  59632846 CAATAAAGATGTCTGTATCTGTTATCTAAAATCAACTTGAAAGGT----TTGCCCCCTCACACCTAAAGTGACTTTGTATAAAGAACATAATTC
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         747808 90 -   2017862 CAATAAAGATGTCTGTATCTGTTATCTAAAATCAACCTGGAAAGT----TTACCCCCTCCCACCTTAAGTGACTTTGAATAGAGAACATAATTC
i odoRosDiv1.KB229312      C 0 C 0
s colLiv1.KB375452           1389074 63 +   4234233 ------AGAATTCTATATCAAATACTGGGCTACAACCATGA--------------------ACCTCATG-----TCTTATAATGCTGAGAATTG
i colLiv1.KB375452         C 0 I 874
s ficAlb2.chrZ              55056048 63 +  59856998 ------AGAATTCTCTATCAAATATTGGGCTAAAACTGTGA--------------------ACCTCAAG-----TTTTATAATGCTGAGAATTG
i ficAlb2.chrZ             C 0 C 0
s zonAlb1.KB913240            786621 63 -    852449 ------AGAATTCTCTATCAAACACTGGGTTTCAACTGTGA--------------------CCCTGAAG-----TTTTATAATGCTGAGAACTG
i zonAlb1.KB913240         C 0 C 0
s geoFor1.JH739942           1278530 63 +   5104860 ------AGAATTCTCTAACAAATACTGGGTTTCAACTGTGA--------------------ACCTGAAG-----TTTTATAATGCTGAGAATTG
i geoFor1.JH739942         C 0 C 0
s pseHum1.KB221303            458733 63 -   1055857 ------AAAATTCTCTATCAAATACTGGGCTAAAACCGTGA--------------------ACCTCTAG-----TTTTATAATGCTGAGAATTG
i pseHum1.KB221303         C 0 C 0
s melUnd1.JH556568           2078068 63 +   4296882 ------AGAATTCTCTATCAAATACTGGGCTACAACTGTGA--------------------ACCTCATG-----TTTTGTAATGCTGAGAACTG
i melUnd1.JH556568         C 0 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e anoCar2.chr3             144851680 80 + 204416410 I
e allMis1.JH737334             56903 4702 -    565068 I
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chrZ              23193492 1096 -  82363669 I
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB742960            138948 1155 +    531124 I
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e monDom5.chr5             230632068 10 - 304825324 I
e taeGut2.chrZ              13215714 90 +  72861351 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=71728.000000
s hg38.chr8_KI270814v1_alt     69217 10 +    141812 AACTCTGTTT
s ponAbe2.chr8              59039056 10 + 153482349 AACTCTGTTT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48112474 10 + 100215132 AACTTTGTTT
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190753355 10 - 190850796 AACATTGGTT
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14116929 10 -  14256875 AATATTGGTT
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3015756 10 -  10937097 AACTTTAGTT
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1501216 10 -   2937107 AACTTTAGTT
i panHod1.KE114653         C 0 C 0
s bosTau8.chr27             18216833 10 +  45407902 AACTTTAGTT
i bosTau8.chr27            C 0 C 0
s oviAri3.chr26             17843343 10 +  44077779 AACTTTAGTT
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17928813 10 +  44118849 AACTTTAGTT
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18743638 10 -  39960074 AACTTCAGTT
i equCab2.chr27            C 0 C 0
s felCat8.chrB1             20474151 10 + 206538554 AACTTTAGTT
i felCat8.chrB1            C 0 C 0
s canFam3.chr16             18191136 10 -  59632846 AACTTTAGTT
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         747898 10 -   2017862 AACTTTAGTA
i odoRosDiv1.KB229312      C 0 C 0
s ficAlb2.chrZ              55056111 10 +  59856998 ACCAATATTT
i ficAlb2.chrZ             C 0 I 830
s zonAlb1.KB913240            786684 10 -    852449 ACCAATATTT
i zonAlb1.KB913240         C 0 C 0
s geoFor1.JH739942           1278593 10 +   5104860 ACCAATATTT
i geoFor1.JH739942         C 0 I 862
s pseHum1.KB221303            458796 10 -   1055857 ACCAATATTT
i pseHum1.KB221303         C 0 C 0
s melUnd1.JH556568           2078131 10 +   4296882 ACCAATACTT
i melUnd1.JH556568         C 0 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e anoCar2.chr3             144851680 80 + 204416410 I
e colLiv1.KB375452           1389137 874 +   4234233 I
e allMis1.JH737334             56903 4702 -    565068 I
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chrZ              23193492 1096 -  82363669 I
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB742960            138948 1155 +    531124 I
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e monDom5.chr5             230632068 10 - 304825324 I
e taeGut2.chrZ              13215714 90 +  72861351 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=182705.000000
s hg38.chr8_KI270814v1_alt     69227 51 +    141812 TCTACAGCAGAG--A-TTCATTTTAATGTTTTTATATTAT--ATCAAG--G-CAAG-----TTT
s ponAbe2.chr8              59039066 51 + 153482349 TCTACAGCAGAG--A-TTCATTTTAATGTTTTTATATTAT--GTCAAG--G-CAAG-----TTT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48112484 51 + 100215132 TCTACAGCAAAG--A-TTCATTTTAATGTTTTTGTATTAT--ATCAAG--G-CAAG-----TTT
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190753365 53 - 190850796 CCTACAGCAAAG--A-TCCATATCGATGTTTTTATAATATTATTCAAG--G-CAAA-----TTT
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14116939 53 -  14256875 CCTATGGCAAAG--A-TCCATATCGATGTTTTTATAGTATTATTCAAA--G-CAAG-----TTT
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3015766 57 -  10937097 CCTATACCAAAATTA-TTTCTTTCAATATTTTTGTAGTATCATTCAAA--G-CAAG--T-TTTT
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1501226 57 -   2937107 CCTATATCAAAGTTA-TTTC-TTTAATATTTTTATAGTAGCATTCAAA--G-CAAG--TCTTTT
i panHod1.KE114653         C 0 C 0
s bosTau8.chr27             18216843 58 +  45407902 CCTATATCAAAGTTA-TTTCTTTTAATATTTTTATAGTATCATTCAAA--G-CAAG--TCTTTT
i bosTau8.chr27            C 0 C 0
s oviAri3.chr26             17843353 57 +  44077779 CCTCTATCAAAGCTA-TTTC-TTTAATATTTTTATAGTAGCATTCAAA--G-CAAG--TCTTTT
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17928823 57 +  44118849 CCTATATCAAAGTTA-TTTC-TTTAATATTTTTATAGTAGCATTCAAA--G-CAAG--TCTTTT
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18743648 57 -  39960074 CTTATAGCAAAGTTA-TTTCTTTCAACGTTTTTAGAATATCATCCAAA--G-CAAG---TTTTT
i equCab2.chr27            C 0 C 0
s felCat8.chrB1             20474161 58 + 206538554 CTGACAGCAAAGTTATTTTCTTTCAATGTTTTTATAATATCATTCAAA--G-CAAG---TTTTT
i felCat8.chrB1            C 0 C 0
s canFam3.chr16             18191146 59 -  59632846 CTGACAGCAAA-TTA-TTTCTTACAATGTTTTCATAATATCATTCAAA--G-CAGGTTTTTTTT
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         747908 58 -   2017862 CTGACAGCAAAGTTA-TTTCTTTCAATGTTTTTATAATATCATTCAAA--G-CAAG--TTTTTT
i odoRosDiv1.KB229312      C 0 C 0
s zonAlb1.KB913240            786694 41 -    852449 ---GTGGGAGAGTAA-TGCCTCAGA-------------GTAATTTAAACTG-GAAG-----TCT
i zonAlb1.KB913240         C 0 I 23
s pseHum1.KB221303            458806 49 -   1055857 ---GTGGAAGAGAAA-TGCCTCTGAGTAAC-----AATGTAATTTGAAATG-CAAG-----TCT
i pseHum1.KB221303         C 0 I 896
s melUnd1.JH556568           2078141 53 +   4296882 ---GTGCAAGAGTAA-TGCCTCTGAATGact--aaaatgtaatttcaacTGAAAAG-----TCT
i melUnd1.JH556568         C 0 I 1
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55056121 830 +  59856998 I
e anoCar2.chr3             144851680 80 + 204416410 I
e colLiv1.KB375452           1389137 874 +   4234233 I
e allMis1.JH737334             56903 4702 -    565068 I
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chrZ              23193492 1096 -  82363669 I
e geoFor1.JH739942           1278603 862 +   5104860 I
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB742960            138948 1155 +    531124 I
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e monDom5.chr5             230632068 10 - 304825324 I
e taeGut2.chrZ              13215714 90 +  72861351 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=25190.000000
s hg38.chr8_KI270814v1_alt     69278 5 +    141812 GATTT
s ponAbe2.chr8              59039117 5 + 153482349 GATTT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48112535 5 + 100215132 GATTT
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190753418 5 - 190850796 GATTT
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14116992 5 -  14256875 GATTC
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3015823 5 -  10937097 TACGT
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1501283 5 -   2937107 TATGT
i panHod1.KE114653         C 0 C 0
s bosTau8.chr27             18216901 5 +  45407902 TATGT
i bosTau8.chr27            C 0 C 0
s oviAri3.chr26             17843410 5 +  44077779 TATGT
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17928880 5 +  44118849 TATGT
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18743705 5 -  39960074 TATTT
i equCab2.chr27            C 0 C 0
s felCat8.chrB1             20474219 5 + 206538554 TATTT
i felCat8.chrB1            C 0 C 0
s canFam3.chr16             18191205 5 -  59632846 TATTT
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         747966 5 -   2017862 TATTT
i odoRosDiv1.KB229312      C 0 C 0
s zonAlb1.KB913240            786758 3 -    852449 --TTT
i zonAlb1.KB913240         I 23 C 0
s melUnd1.JH556568           2078195 5 +   4296882 GATTT
i melUnd1.JH556568         I 1 I 807
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55056121 830 +  59856998 I
e anoCar2.chr3             144851680 80 + 204416410 I
e pseHum1.KB221303            458855 896 -   1055857 I
e colLiv1.KB375452           1389137 874 +   4234233 I
e allMis1.JH737334             56903 4702 -    565068 I
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chrZ              23193492 1096 -  82363669 I
e geoFor1.JH739942           1278603 862 +   5104860 I
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB742960            138948 1155 +    531124 I
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e monDom5.chr5             230632068 10 - 304825324 I
e taeGut2.chrZ              13215714 90 +  72861351 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=14508.000000
s hg38.chr8_KI270814v1_alt     69283 3 +    141812 CTT
s ponAbe2.chr8              59039122 3 + 153482349 CTT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48112540 3 + 100215132 CTT
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190753423 3 - 190850796 CAT
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14116997 3 -  14256875 CAT
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3015828 3 -  10937097 TAT
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1501288 3 -   2937107 TAT
i panHod1.KE114653         C 0 C 0
s bosTau8.chr27             18216906 3 +  45407902 TAT
i bosTau8.chr27            C 0 C 0
s oviAri3.chr26             17843415 3 +  44077779 TAT
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17928885 3 +  44118849 TAT
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18743710 3 -  39960074 TAT
i equCab2.chr27            C 0 C 0
s felCat8.chrB1             20474224 3 + 206538554 TAT
i felCat8.chrB1            C 0 C 0
s canFam3.chr16             18191210 3 -  59632846 TAT
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         747971 3 -   2017862 TAT
i odoRosDiv1.KB229312      C 0 C 0
s zonAlb1.KB913240            786761 3 -    852449 CAT
i zonAlb1.KB913240         C 0 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55056121 830 +  59856998 I
e anoCar2.chr3             144851680 80 + 204416410 I
e pseHum1.KB221303            458855 896 -   1055857 I
e colLiv1.KB375452           1389137 874 +   4234233 I
e allMis1.JH737334             56903 4702 -    565068 I
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chrZ              23193492 1096 -  82363669 I
e geoFor1.JH739942           1278603 862 +   5104860 I
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB742960            138948 1155 +    531124 I
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556568           2078200 807 +   4296882 I
e monDom5.chr5             230632068 10 - 304825324 I
e taeGut2.chrZ              13215714 90 +  72861351 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=189107.000000
s hg38.chr8_KI270814v1_alt     69286 26 +    141812 TCTGGGTAACTATAGGCAGAATGTCA
s ponAbe2.chr8              59039125 26 + 153482349 TCTGGGTAACTATAGGCAGAATGTCA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48112543 26 + 100215132 TCTCGGTAACTATAGGCAGAATGTCA
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190753426 26 - 190850796 CCTTGGCAACTTTAGGCAGAATGTCA
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14117000 26 -  14256875 CCTTGGCAACTGTAGGCAGAATGTCA
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3015831 26 -  10937097 CCTTGGCAACCACAAGCAGAATGTTA
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1501291 26 -   2937107 CCTTGGCAACCATAAGCAGAATGTCA
i panHod1.KE114653         C 0 C 0
s bosTau8.chr27             18216909 26 +  45407902 CCTTGGCAACCATAAGCAGAATGTCA
i bosTau8.chr27            C 0 C 0
s oviAri3.chr26             17843418 26 +  44077779 CCTTGGCAACCATAAGCAGAAAGTCA
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17928888 26 +  44118849 CCTTGGCAACCATAAGCAGAATGTCA
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18743713 26 -  39960074 CCTTGGCAAACATAAGCAGAATGTCA
i equCab2.chr27            C 0 C 0
s felCat8.chrB1             20474227 26 + 206538554 CCTTGGCAACTATAAGCAGAATGTCA
i felCat8.chrB1            C 0 C 0
s canFam3.chr16             18191213 26 -  59632846 CCTTGGCAACTATAAGCTGAATGTCA
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         747974 26 -   2017862 CCTTGGCAACTATAAGCAGAATGTCA
i odoRosDiv1.KB229312      C 0 C 0
s monDom5.chr5             230632078 26 - 304825324 TCTAGACAACCAGAAGTTTAGCTACA
i monDom5.chr5             I 10 C 0
s zonAlb1.KB913240            786764 25 -    852449 -TCCGATCACAAAGGCTGAAATGCCA
i zonAlb1.KB913240         C 0 I 751
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55056121 830 +  59856998 I
e anoCar2.chr3             144851680 80 + 204416410 I
e pseHum1.KB221303            458855 896 -   1055857 I
e colLiv1.KB375452           1389137 874 +   4234233 I
e allMis1.JH737334             56903 4702 -    565068 I
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chrZ              23193492 1096 -  82363669 I
e geoFor1.JH739942           1278603 862 +   5104860 I
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB742960            138948 1155 +    531124 I
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556568           2078200 807 +   4296882 I
e taeGut2.chrZ              13215714 90 +  72861351 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=534264.000000
s hg38.chr8_KI270814v1_alt     69312 82 +    141812 GCAATA----CTCCACGTATTAGC--TATTAGAGATAAAACACTGTGAAACTCTAAAGGCCTTGATTATTGGGCCAATGAGATATTTA
s ponAbe2.chr8              59039151 82 + 153482349 GCAATA----CTCCACGTATTAGC--TATTAGAGATAAAACACTGTGAAACTCTAAAGGCCTTGATTATTGGGCCAATGAGATATTTA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48112569 82 + 100215132 GCAATA----CTCCATGTATTAGC--TATTAGAGATAAAACACTGTGAAACTCTAAAGGCCTTGATTATTGGGCCAATGAGATACTTA
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190753452 82 - 190850796 GCAACG----CCCTCCATATTAGC--TATTAGAGAGAAAACATTGTGAAACTCTAAAGGCCTTGATTATCGGGCCAATGAAACATTTA
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14117026 82 -  14256875 GTGACG----CTCTCCATATTAGC--TATTAGAGAGAAAACACTGTGAAACTCTAAAGGCCTTGATGATTGGGCCAATGAAACATTAA
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3015857 84 -  10937097 ACAATG----CTCAACATATTAGCTCTATTAGAGAGAAAACACCATGAAACTCTAAAGACCTTGATTATTGAGGCAATGAAAAATTCA
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1501317 83 -   2937107 ACAATG----CTCAACATATTAGCACTATTAGAGAGAAACTACCATGAAACTCTAAAGACTTTGCTTATTG-GGCAATGAAAAATTCA
i panHod1.KE114653         C 0 C 0
s bosTau8.chr27             18216935 83 +  45407902 ACAATG----CTCAACATATTAGCACTATTAGAGAGAAACTACCGTGCAATTCTAAAGACTCTGCTTATTG-GGCAATGAAAAATTCA
i bosTau8.chr27            C 0 C 0
s oviAri3.chr26             17843444 83 +  44077779 ACAATG----CTCAACATATTAGCACTATTAGAGAGAAACTACCATGAAACTCTAAAGACTTTGCTTATTG-GGCAATGAAAAATTCA
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17928914 83 +  44118849 ACAATG----CTCAACATATTAGCACTATTAGAGAGAAACTACCATGAAACTCTAAAGACTTTGCTTATTG-GGCAATGAAAAATTCA
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18743739 84 -  39960074 ACAATG----CTCAACATATTAGCTATATTAGAGAGAAAACGCCATGAAACTCTAAAGACCTTGATTATTGGGGCAATGAAAAATTCA
i equCab2.chr27            C 0 C 0
s felCat8.chrB1             20474253 84 + 206538554 ACAATG----CTCAACGTATTAGGTATATTAAAGAGAAAACACAATGAAACTCTAAAGACCTTGATTATTGGGGCAATGAAAAATTCA
i felCat8.chrB1            C 0 C 0
s canFam3.chr16             18191239 84 -  59632846 ACAATG----TTCAACATATTAGCTATATTAGAGAGAAAACACAATGAAACTCTAAAGACCTTGATTATTGGGGCAATGAAAAATTCA
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         748000 84 -   2017862 ACAATG----TTCAACATATTAGCTATATTAGAGAGAAAGCACAATGAAACTCTAAAGACCTTGATTATTGGGGCAATGAAAAATTCA
i odoRosDiv1.KB229312      C 0 C 0
s monDom5.chr5             230632104 81 - 304825324 AAGATATCCTCTTCACTTAGGAGCAAGGAAAGAGAAAAAATCCCATGAAACT-------CCTTGATTACTGGGGCAATGAAAAATTCA
i monDom5.chr5             C 0 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55056121 830 +  59856998 I
e anoCar2.chr3             144851680 80 + 204416410 I
e pseHum1.KB221303            458855 896 -   1055857 I
e zonAlb1.KB913240            786789 751 -    852449 I
e colLiv1.KB375452           1389137 874 +   4234233 I
e allMis1.JH737334             56903 4702 -    565068 I
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chrZ              23193492 1096 -  82363669 I
e geoFor1.JH739942           1278603 862 +   5104860 I
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB742960            138948 1155 +    531124 I
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556568           2078200 807 +   4296882 I
e taeGut2.chrZ              13215714 90 +  72861351 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=103557.000000
s hg38.chr8_KI270814v1_alt     69394 19 +    141812 TGCTGTGATCTGATGGAGC
s ponAbe2.chr8              59039233 19 + 153482349 TGCTGTGATCTGATGGAGC
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48112651 19 + 100215132 TGCTGTGATCTGATGGAGC
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190753534 19 - 190850796 TGCCCTGATCGGATAGAGC
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14117108 19 -  14256875 TGCTCTGATCGGATGGAGC
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3015941 13 -  10937097 TGCCCTGCTCT------GC
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1501400 19 -   2937107 TGCCCTGCTCTGGTGGAGC
i panHod1.KE114653         C 0 C 0
s bosTau8.chr27             18217018 19 +  45407902 TGCCCTGCTCTGGTGGAGC
i bosTau8.chr27            C 0 C 0
s oviAri3.chr26             17843527 19 +  44077779 TGCCCTGCTCTGGTGGAGC
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17928997 19 +  44118849 TGCCCTGCTCTGGTGGAGC
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18743823 19 -  39960074 TGTCCTGCTCTGGTGGAGC
i equCab2.chr27            C 0 C 0
s felCat8.chrB1             20474337 19 + 206538554 TGCCCTGCTCTGGTGGAGC
i felCat8.chrB1            C 0 C 0
s canFam3.chr16             18191323 19 -  59632846 TGCCCTGCTCTGGTGGAGC
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         748084 19 -   2017862 TGCTCTGCTCTAGTGGAGC
i odoRosDiv1.KB229312      C 0 C 0
s monDom5.chr5             230632185 14 - 304825324 CATTTTGTTCTCAC-----
i monDom5.chr5             C 0 C 0
s allMis1.JH732700            227122 16 -   1095808 --TGCTGCTATCATATAG-
i allMis1.JH732700         n 4702 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55056121 830 +  59856998 I
e anoCar2.chr3             144851680 80 + 204416410 I
e pseHum1.KB221303            458855 896 -   1055857 I
e zonAlb1.KB913240            786789 751 -    852449 I
e colLiv1.KB375452           1389137 874 +   4234233 I
e falPer1.KB391107           2216113 646 -   3101084 T
e falChe1.KB398074           4263496 646 -   7151304 T
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chrZ              23193492 1096 -  82363669 I
e geoFor1.JH739942           1278603 862 +   5104860 I
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB742960            138948 1155 +    531124 I
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556568           2078200 807 +   4296882 I
e taeGut2.chrZ              13215714 90 +  72861351 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=12376.000000
s hg38.chr8_KI270814v1_alt     69413 1 +    141812 A
s ponAbe2.chr8              59039252 1 + 153482349 A
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48112670 1 + 100215132 A
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190753553 1 - 190850796 A
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14117127 1 -  14256875 A
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3015954 1 -  10937097 A
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1501419 1 -   2937107 A
i panHod1.KE114653         C 0 C 0
s bosTau8.chr27             18217037 1 +  45407902 A
i bosTau8.chr27            C 0 C 0
s oviAri3.chr26             17843546 1 +  44077779 A
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17929016 1 +  44118849 A
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18743842 1 -  39960074 A
i equCab2.chr27            C 0 C 0
s felCat8.chrB1             20474356 1 + 206538554 A
i felCat8.chrB1            C 0 C 0
s canFam3.chr16             18191342 1 -  59632846 A
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         748103 1 -   2017862 A
i odoRosDiv1.KB229312      C 0 C 0
s falChe1.KB398104           5465007 1 -   9141934 A
i falChe1.KB398104         n 646 C 0
s falPer1.KB390515           2967208 1 -   4376501 A
i falPer1.KB390515         n 646 C 0
s anoCar2.chr3             144851760 1 + 204416410 A
i anoCar2.chr3             I 80 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55056121 830 +  59856998 I
e pseHum1.KB221303            458855 896 -   1055857 I
e zonAlb1.KB913240            786789 751 -    852449 I
e colLiv1.KB375452           1389137 874 +   4234233 I
e allMis1.JH732700            227138 0 -   1095808 C
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chrZ              23193492 1096 -  82363669 I
e geoFor1.JH739942           1278603 862 +   5104860 I
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB742960            138948 1155 +    531124 I
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556568           2078200 807 +   4296882 I
e monDom5.chr5             230632199 0 - 304825324 C
e taeGut2.chrZ              13215714 90 +  72861351 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=13923.000000
s hg38.chr8_KI270814v1_alt     69414 1 +    141812 A
s ponAbe2.chr8              59039253 1 + 153482349 A
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48112671 1 + 100215132 A
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190753554 1 - 190850796 A
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14117128 1 -  14256875 A
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3015955 1 -  10937097 A
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1501420 1 -   2937107 A
i panHod1.KE114653         C 0 C 0
s bosTau8.chr27             18217038 1 +  45407902 A
i bosTau8.chr27            C 0 C 0
s oviAri3.chr26             17843547 1 +  44077779 A
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17929017 1 +  44118849 A
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18743843 1 -  39960074 A
i equCab2.chr27            C 0 C 0
s felCat8.chrB1             20474357 1 + 206538554 A
i felCat8.chrB1            C 0 C 0
s canFam3.chr16             18191343 1 -  59632846 A
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         748104 1 -   2017862 A
i odoRosDiv1.KB229312      C 0 C 0
s falChe1.KB398104           5465008 1 -   9141934 A
i falChe1.KB398104         C 0 C 0
s falPer1.KB390515           2967209 1 -   4376501 A
i falPer1.KB390515         C 0 C 0
s taeGut2.chr4              40872849 1 +  69780378 A
i taeGut2.chr4             n 90 C 0
s anoCar2.chr3             144851761 1 + 204416410 A
i anoCar2.chr3             C 0 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55056121 830 +  59856998 I
e pseHum1.KB221303            458855 896 -   1055857 I
e zonAlb1.KB913240            786789 751 -    852449 I
e colLiv1.KB375452           1389137 874 +   4234233 I
e allMis1.JH732700            227138 0 -   1095808 C
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chrZ              23193492 1096 -  82363669 I
e geoFor1.JH739942           1278603 862 +   5104860 I
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB742960            138948 1155 +    531124 I
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556568           2078200 807 +   4296882 I
e monDom5.chr5             230632199 0 - 304825324 C
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=8295.000000
s hg38.chr8_KI270814v1_alt     69415 1 +    141812 A
s ponAbe2.chr8              59039254 1 + 153482349 A
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48112672 1 + 100215132 A
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190753555 1 - 190850796 A
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14117129 1 -  14256875 A
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3015956 1 -  10937097 A
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1501421 1 -   2937107 A
i panHod1.KE114653         C 0 C 0
s bosTau8.chr27             18217039 1 +  45407902 A
i bosTau8.chr27            C 0 C 0
s oviAri3.chr26             17843548 1 +  44077779 A
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17929018 1 +  44118849 A
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18743844 1 -  39960074 A
i equCab2.chr27            C 0 C 0
s felCat8.chrB1             20474358 1 + 206538554 A
i felCat8.chrB1            C 0 C 0
s canFam3.chr16             18191344 1 -  59632846 A
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         748105 1 -   2017862 A
i odoRosDiv1.KB229312      C 0 C 0
s colLiv1.KB375368            171884 1 +  19163802 a
i colLiv1.KB375368         n 874 C 0
s falChe1.KB398104           5465009 1 -   9141934 G
i falChe1.KB398104         C 0 C 0
s falPer1.KB390515           2967210 1 -   4376501 G
i falPer1.KB390515         C 0 C 0
s taeGut2.chr4              40872850 1 +  69780378 G
i taeGut2.chr4             C 0 C 0
s anoCar2.chr3             144851762 1 + 204416410 G
i anoCar2.chr3             C 0 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE026486              3582 666 -     24340 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55056121 830 +  59856998 I
e pseHum1.KB221303            458855 896 -   1055857 I
e zonAlb1.KB913240            786789 751 -    852449 I
e allMis1.JH732700            227138 0 -   1095808 C
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chrZ              23193492 1096 -  82363669 I
e geoFor1.JH739942           1278603 862 +   5104860 I
e melGal1.chr1              24929366 674 + 204065131 T
e anaPla1.KB742960            138948 1155 +    531124 I
e amaVit1.KB277496              7479 640 -     10329 T
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556568           2078200 807 +   4296882 I
e monDom5.chr5             230632199 0 - 304825324 C
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=2346153.000000
s hg38.chr8_KI270814v1_alt     69416 194 +    141812 GCTTTGACAGGGTT-ATT--------GAGCCACCTTCAAAGTG-TATCAGTGAAGTTCTTGGCTTGCTATTTTAGATAAACAGCTTTCATTTTTAC----TAGTTGCTTGTACTTAATAAGGTTACTGGATTGATTCAAGTTGTTTGCAATGCGTTGAAGGTGAAGAGTATTGT------------ATCTAGTGTCC-TCATAACACACTATTACTTTTCT-
s ponAbe2.chr8              59039255 194 + 153482349 GCTTTAACAGGGTT-ATT--------GAGCCACCTTCAAAGTG-TATCAGTGAAGTTCTTGGCTTGCTGTTTTAGATAAACAGCTTTCATTTTTAC----TAGTTGCTTGTACTTAATAAGGTTACTGGATTGATTCAAGTTGTTTGCAATACCTTGAAGGTGAAGAGTATTGT------------ATCTAGTGTCC-TCATAACACACTATTACTTTTCT-
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48112673 195 + 100215132 GCTTTGACAGGGTT-ATT--------GAGCCACCTTCAAAGTGTTATCAGTGAAGTTCTTGGCTTGCTGTTTTAGATAAACGACTTTCATTTTTAC----TAGTTGCTTGTACTTAATAAGGTTACTGGATTGATTCAAGCTGTTTGCAATGCTTTGAAGGTGAAGAGTATTGT------------ATCTAGTGTCC-TCATAACACACTATTACTTTCCT-
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190753556 195 - 190850796 GCTTTGGCAGGGAT-AGT--------GAGCCACCTTCCAAGTA-TACCAGTGAAACTCTC-GCCTGCTGTTTCAGATAAATGACTTTCA-TTTTAC----TGTTGGCTTGTGCCTGATAAGGTTACGAGATTGATTCAAGTTGTTTTCAATGCCTTGAAGGCAAAGAATGTTGT---------AGCAGCCAGCGTCC-TCATAACGCACTATTACTTGTCT-
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14117130 195 -  14256875 GCTTTGGCAGGGAT-AGT--------GAGCCACCTTCCGAGGA-CACCAGTAAAGCTCTC-GCCTGCTGCTTCAGATAAATGACTTTCA-TTTTAC----TGTTGGCTTGTGCTTGATAAGGTTATGAGATTGATTCGAGTTGTTTTCAATGCTGTGAAGGCAAAGAATGTCGT---------AGCATCTAGTGTTC-TCGTAACGCACTATTACTTGTCT-
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3015957 196 -  10937097 GCTTTGGCAGTGGT-AGT--------GAGACAACGTCAATGTG-TACCAATGAAGTTTCCAATCTTCTGCTTCAGATAAATGGTTTTCA-TTTTAC----AGTTTGCTTGTATTTGATAAGGTTATTGGATTGATTCAAGTTGTTCACAGTGCCTTGAAGGCAAAGGATGTTAT---------AGCATCCAGTGTCC-TCACAGCTCACTAATGCTTTTCT-
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1501422 193 -   2937107 GTTTTGGCAGCGTT-AGT--------GACACAACATCAA--GG-TACAAATTAAGTCTCCAACCTGCTGTTTCAGATAAACGGCTTTCA-TTTTAC----TGTTTGCTTGTGTTTAATAAGGTTACC-AACTGATTCAAGTTGTTCACAATGCCTTGAAGGCAAAGGATGTCAT---------AGCACGCAGCATCC-TCACAACCCACCAATGCTTTTCT-
i panHod1.KE114653         C 0 I 2
s bosTau8.chr27             18217040 192 +  45407902 GTTCTGGCAGCGTT-AGT--------GACACAACGTCAA--GG-TACAAATGAAGTTTCCAACCTGCTGTTTCAGATAAATGGCTTTCA-TTTTAC----TGTTTGCTTGTGTTTAATAAGG-TACC-AATTGATTCAAGTTGTTCACAACACCTTGAAGGCAAAGGATGTCGT---------AGCACGCAGCATCC-TCACAACTCACCAATGCTTTTCT-
i bosTau8.chr27            C 0 I 2
s oviAri3.chr26             17843549 193 +  44077779 GTTTTGGCAGCGTT-AGT--------GACACAACATCAA--GG-TACAAATTAAGTCTCCAACCTGCTGTTTCAGATAAACGGCTTTCA-TTTTAC----TGTTTGCTTGTGTTTAATAAGGTTACC-GATTGATTCAAGTTGTTCACAATGCCTTGAAGGCAAAGGATGTCAT---------AGCACGCAGCATCC-TCACAACACACCAGTGCTTTTCT-
i oviAri3.chr26            C 0 I 2
s capHir1.chr27             17929019 193 +  44118849 GTTTTGGCAGCGTT-AGT--------GACACAACATCAA--GG-TACAAATTAAGTCTCCAACCTGCTGTTTCAGATAAACGGCTTTCA-TTTTAC----TGTTTGCTTGTGTTTAATAAGGTTACC-GATTGATTCAAGTTGTTCACAATGCCTTGAAGGCAAAGGATGTCAT---------AGCACGCAGCATCC-TCACAACCCACCAGTGCTTTTCT-
i capHir1.chr27            C 0 I 2
s equCab2.chr27             18743845 196 -  39960074 GCTTTGGCAGGGTT-AGC--------GAGACGCCTTTAAAGTA-TACTAATGAAGTTTCCAACCTGCTGTTTCAGATAAATGGTTTTCA-TTTCAC----TGTTTGGTTGTGCTTGATAAGGTTACTGGATGGATTCAAGTTGTTCACAATGCCTTGAAGGCAAAGGATATTAT---------AGCATCCAGTGTCT-TCAAAGCTCACTCTTGCTTTTCT-
i equCab2.chr27            C 0 C 0
s felCat8.chrB1             20474359 196 + 206538554 GCTTTGGCAGGGTT-AGT--------AAGATGCCTTCAAAACA-TACCAATGAATTTTCCAACCTGCTGTTTCAGATAAGTGTTTTTCA-TTTTTC----TGTTTACTTGTGTTTGATAAGTTTACTGCATTGATTCCAGTTGTTTGCAACACCTTGAAGGCAAAGGGTGTTAC---------AGCATCCAGGGTCC-TCCTGACTCACTATTGCTTTTCT-
i felCat8.chrB1            C 0 C 0
s canFam3.chr16             18191345 196 -  59632846 GCTTTGGCAGGGTT-AGT--------GAGACGCCTTCAAAGTA-TACCAATGAATTTTCCAACCTGCTGTTTCAGATAAATGGTTTTCA-TTTTTC----TGTTTGCTTGTGTTTGATAAGGTTACTGGATTGATTCAAGTTGTTTGCAATGCCTTGAAGGCAAAGGATGTTAC---------AGCATCCAGTGTCC-TCATGAGTCACTATTGCTTTTCT-
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         748106 196 -   2017862 GCTTTGGCAGGGTT-AGT--------GAGATGCCTTCAAAGTA-TACCAATGAATTTTCCAACCTGCTGTTTCAGATAAATGGTTTTCA-TTTTTC----TGTTTGCTTGTGTTTGATAAGGTTACTGGATTGATTCAAGTTGTTTGCAACGCCTTGAAGGCAAAGGATGTTAC---------AGCATCCAGTGTCC-TCATGACTCACTATTGCTtttct-
i odoRosDiv1.KB229312      C 0 I 800
s monDom5.chr5             230632199 191 - 304825324 ------ATAGGTTA-AGT--------GGACTACCTTCAACATG-TGCTATTGAACTTTCCAGTCGACTGTTCCAGATAAATTGTTTTCA-TTTTAC----TGTTTGTTTGTGCCTGATACGGTTATTGGATTGATTCAAGTTGTTTGTGTTGCCTTGCAGGCAAAGGATGCTAC---------TGTATCTAATGCCCTTTATAACACTTTATTGTTTTTGT-
i monDom5.chr5             C 0 C 0
s colLiv1.KB375368            171885 197 +  19163802 gCTTTGAGACGGTTAAGT--------GAGCTTTCCTCATATCA-TA---------CATTTGTACTGCTGGTTCAGATAAATGggtttca-ttttat----tgtttacTTGTATTTGATAAGGTTCTTGGATTGATTCCGGTGGCTCGCAATGCCTTCCAGGCACAGGATGTTATTCTTACTACTGCGCCCAACGCCTTTAACAACACAGTG--GCTTTCTCT
i colLiv1.KB375368         C 0 C 0
s falChe1.KB398104           5465010 210 -   9141934 GCTTTGACAGAATTAAGTGAACCATAGTGAAAGTATACCATGG-AA--------GCATCTGGTCTGTGGTTTCAGCTGAATGCCCTTCA-TTTCATTGTCTGTTTGCTTGTGTGTGATGAATTTCATGGACTGGCTCAGGTTGTTTGCACTGCCTTGCAGGCAAAGGATGTTACCCTCACCACAGCACTCAATGTCCTTCACAACAGATTG--ACTTCCCTG
i falChe1.KB398104         C 0 C 0
s falPer1.KB390515           2967211 210 -   4376501 GCTTTGACAGAATTAAGTGAACCATAGTGAAAGTATACCATGG-AA--------GCATCTGGTCTGTGGTTTCAGCTGAATGCCCTTCA-TTTCATTGTCTGTTTGCTTGTGTGTGATGAATTTCATGGACTGGCTCAGGTTGTTTGCGCTGCCTTGCAGGCAAAGGATGTTACCCTCACCACAGCACTCAATGTCCTTCACAACAGATTG--ACTTCCCTG
i falPer1.KB390515         C 0 C 0
s taeGut2.chr4              40872851 184 +  69780378 GCATTGACAGAGTTAAAT---------TGAGTGTC--------------------CATTTGTACTGCTGGTTCAGATAAATGGGTTTCA-TTTCAT----TGTTTCCTTGTACTTGATAAGGTTCTTGGATTGATTCTGGTGGCTCACAATGCCTTCCAGGCACAGGATGTTATTCATACTACTGCATCCAAAACCTTTCACAACACTG----GTTTCCTCT
i taeGut2.chr4             C 0 C 0
s melUnd1.JH556598           4025878 199 +  13137711 gcttTGACAGGGTTAAGT--------GTGAACTCCTCATATTC-TA---------CGTTTGTACTGCTGGCTCAGATAAATGggtttca-ttttat----tgtttaCTTGTACTTGATAAGGCTCTTGGATTGATTCCGGTGGCTCACAATGCCTTCCAGGCACAGGATGTTATTCTTACTACTGCATGCAATGCCTTCCACaacacagtgtttttttctct
i melUnd1.JH556598         n 807 C 0
s amaVit1.KB267266             44108 199 +     45143 GCTTTGACAGGGTTAAGT--------GTGAATTCCTCATATTC-TA---------CGTTTGTACTGCTGGTTCAGATAAATGggtttca-ttttat----tgtttaCTTGTACTTGATAAGGCTCTTGGATTGATTCCGGCGGCTCACAATGCCTTCCAGGCACAGGATGTTATTCTTACTACTGCATCCAATGCCTTCCACAAcacagtgtttttttctct
i amaVit1.KB267266         n 640 C 0
s araMac1.KE027501              2528 198 +     16385 gctttgaCAGGGTTAAGT--------GTGAACTCCTCATATTC-TA---------CGTTTGTACTGTTGGTACAGATAAATGggtttca-ttttat----tgtttacTTGTACTTGATAAGGCTCCTGGATTGATTCCGGCGGCTCACAATGCCTTCCAGGCACAGGATGTTATTCTTACTACCGCATCCAATGCCTTCCACAacacagtg-ttttttctct
i araMac1.KE027501         n 666 C 0
s galGal4.chr4              62357520 194 +  90216835 gttttGACAGGGTTAAGT--------GCACAGTCCTCAGACCA-TG---------CATCTGTACTGCCCATTCAGATAAATGggtttca-ttttat----tgtttaCTTGTACTTGATAAGGTTTTTGGATTGATTCTGGTGGCTCACAATGCCTCCCAGGCACAGGATGTTATTCTTACTACTGCATCCAAAGTCTTTCACAACAGT-----TTTTTCTCT
i galGal4.chr4             n 1096 C 0
s melGal1.chr4              45133677 194 +  74864452 GTTTTGATAGGGTTAAGT--------GCACAGCCCTCAGATCA-TA---------CATCTGTACTGCCCATTCAGATAAATGGGTTTCA-TTTTAT----TGTTTACTTGTACTTGATAAGGTTTTTGGATTGATTCTGATGGCTTACAATGCCTCCCAGGCACAGGATGTTATTCTTACTACTGCATTCAAAGTCTTTCACAACAGT-----TTTTTCTCT
i melGal1.chr4             n 674 C 0
s allMis1.JH732700            227138 197 -   1095808 GTTTTGACAGGGTTAAGT--------AAGCTTTCCTCAGGGTA-CT---------CTGTTGTACTTCTGGTTCAGATAAATGGGCTTCA-TTTTAT----TGTTTACTTGGGTTTGATAAGATTCTTGGATTGATTCTGGTGGGTCTCAATGCCTTACAGGCACATGATGTTATTCTCTGCACAGTATCCAGTGCCCTTCACAACACAGTG--GCTTTCCTT
i allMis1.JH732700         C 0 C 0
s anoCar2.chr3             144851763 211 + 204416410 GTTTTGACAGAATCAAGTGAACCATGCTGAAAGCCTACCATGG-AA--------GCATCTGGTCTTTGGTTTCAGATGAATGCTTTTCA-TTTCATTGTCTGCTTGCTTGTGTGTGATGAATTTCATGGACTGACTGAGGTTGCTCACAATGCCTTGCAGGCAAAGGATGTTACCCTGGGCAAAACATCTAGTGTCCTTCACAACAGATTGG-TTTTCCCCT
i anoCar2.chr3             C 0 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55056121 830 +  59856998 I
e pseHum1.KB221303            458855 896 -   1055857 I
e zonAlb1.KB913240            786789 751 -    852449 I
e macEug2.GL108065             83888 651 -    187545 T
e geoFor1.JH739942           1278603 862 +   5104860 I
e anaPla1.KB742960            138948 1155 +    531124 I
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=30439.000000
s hg38.chr8_KI270814v1_alt     69610 60 +    141812 GAGGAAGGGT---CTTGTCATTTTA-----CCC--TA-------GATATCAACAGAA-AATATTC-CATTTCTTAT---AT---A
s ponAbe2.chr8              59039449 60 + 153482349 GAGGAAGGGT---CTTATCATTTTA-----CCC--TA-------GATATCAACAGAA-AATATTC-CATTTCTTAT---AT---A
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48112868 60 + 100215132 GAGGAAGGGT---CTTGTCATTTTA-----CCC--TA-------GATATCAACAGAA-AATATTC-CCTTTCTTAT---AT---A
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190753751 58 - 190850796 AAGGAAGGTT---CT-----TAATA-----CCC--TA-------GACATCAACAGAA-AATATTC-TACTTCTTATCACAT---G
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14117325 63 -  14256875 AAGGAAGGTT---CTTGTCATAATA-----CCC--TA-------GACATCAACAGAA-AATATTC-TACTTCTTATCACAT---A
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3016153 63 -  10937097 AAGGAAGGTT---CTTCTCATAATA-----CCT--GA-------GAGGGCAACAGAA-AATACTC-TGCTTCTCATCATAT---A
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1501617 62 -   2937107 AAAGAAGGTT---CTTGTCATAATA-----CCT--GA-------AAAGGC-ACTGGA-AATACTC-TGCTTTTCATCATAT---A
i panHod1.KE114653         I 2 C 0
s bosTau8.chr27             18217234 62 +  45407902 AAGGAAGGTT---CTTGTCATAATA-----CCT--GA-------GAAGGC-AATGGA-AATACTC-CGCTTTTCATCATAT---A
i bosTau8.chr27            I 2 C 0
s oviAri3.chr26             17843744 62 +  44077779 AAGGAAGATT---CTTGTCATAATA-----CCT--GA-------AAAAGC-ACTGGA-AATACTC-TGCTTTTCATCATAT---A
i oviAri3.chr26            I 2 C 0
s capHir1.chr27             17929214 62 +  44118849 AAGGAAGGTT---CTTGTCATAATA-----CCT--GA-------AAAGGC-GCTGGA-AATACTC-TGCTTTTCATCATAT---A
i capHir1.chr27            I 2 C 0
s equCab2.chr27             18744041 61 -  39960074 AAGGAAAGTT---CTTCTTGTAATA-----TCC--AA-------GATAGCAACAG---AATATTC-TACTTCATATCATAT---A
i equCab2.chr27            C 0 C 0
s felCat8.chrB1             20474555 63 + 206538554 AAGGAAGGTT---CTGGTCATAATA-----CAT--CA-------GATAGCAACAGAA-AATATCC-CACTCTGTATCATAT---A
i felCat8.chrB1            C 0 C 0
s canFam3.chr16             18191541 62 -  59632846 -AAGAAGTTT---CTGGTCATAATA-----TCT--AA-------GATAACAACAGAA-AATATTC-CATTTCTTATCATAT---A
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         749102 63 -   2017862 AAGGAAGGTT---CTGGTCATAATA-----CCT--GA-------GATAGCAACAGAA-AATATTC-CACTTTTTATCCTAT---A
i odoRosDiv1.KB229312      I 800 C 0
s monDom5.chr5             230632390 71 - 304825324 AAGTGAGGTA---TGTGTCAGAATAGCCAGCCC--GT-------GATAGCTAAAGCA-ACACAAT-TGTTTGTGATCGAATGAAG
i monDom5.chr5             C 0 C 0
s colLiv1.KB375368            172082 59 +  19163802 AAGAAAGGCA---GGCATTGTGAAA-----CCA--AA----AT-GTCAGCAAAatca-gtttctt-catttttgta---------
i colLiv1.KB375368         C 0 I 110
s falChe1.KB398104           5465220 64 -   9141934 GAGAAACACA---AGTGTCATTCAA-----GCA--GAGATGAT-ACAATGGAAAGCA-CATTCTCATGGTTTTATG---------
i falChe1.KB398104         C 0 I 3
s falPer1.KB390515           2967421 64 -   4376501 GAGAAACACA---AGTGTCATTCAA-----GCA--GAGATGAT-AAAATGGAAAGCA-CATTCTCATGGTTTTATG---------
i falPer1.KB390515         C 0 I 3
s taeGut2.chr4              40873035 59 +  69780378 TACAAAGACA---GGCATTACAAAA-----CTA--AA----AT-ATCAGCAAAATCA-GTTTCTC-CATTTTTGTA---------
i taeGut2.chr4             C 0 I 3
s melUnd1.JH556598           4026077 59 +  13137711 aagaaaGGTA---GGCATTGTGAAa-----cta--aa----at-gtcagaaaaatca-gtttctc-catttttgga---------
i melUnd1.JH556598         C 0 I 3
s amaVit1.KB267266             44307 59 +     45143 aagaaagGCA---GGCATTGTGAAa-----cta--aa----at-gtcagaaaaatca-gtttctt-catttttgga---------
i amaVit1.KB267266         C 0 I 3
s araMac1.KE027501              2726 59 +     16385 aaGAAAGGCA---GGCATTGTGAAA-----Cta--aa----at-gtcataaaaatca-gtttctc-catttttgga---------
i araMac1.KE027501         C 0 I 3
s galGal4.chr4              62357714 57 +  90216835 AAGAAAGGCA---GGCACTGTGAAA-----CTC--AA----AT-atcagcaaaat---gtttttc-cacGTTTGTA---------
i galGal4.chr4             C 0 I 2
s melGal1.chr4              45133871 56 +  74864452 AAGAAAGGCA---GGCACTGTGAAA-----CTC--AA----AT-ATCAGCAAAAT---GTTTTCC-C-CTTTTGTA---------
i melGal1.chr4             C 0 I 2
s allMis1.JH732700            227335 60 -   1095808 AAGAAAGCCA---GGTATTGTCAAA-----CTA--AA----ATGATTAGCAGAAACA-GTTTCTC-AGTTTTTGTG---------
i allMis1.JH732700         C 0 I 7
s anoCar2.chr3             144851974 63 + 204416410 GAATAACACAAATGGCATTTGAACA-----GTATTGA----AT-GCAACAAAAAGCACATTCctt-catctctc-----------
i anoCar2.chr3             C 0 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55056121 830 +  59856998 I
e pseHum1.KB221303            458855 896 -   1055857 I
e zonAlb1.KB913240            786789 751 -    852449 I
e macEug2.GL108065             83888 651 -    187545 T
e geoFor1.JH739942           1278603 862 +   5104860 I
e anaPla1.KB742960            138948 1155 +    531124 I
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=57975.000000
s hg38.chr8_KI270814v1_alt     69670 13 +    141812 TTAATTTTGC---TCT
s ponAbe2.chr8              59039509 13 + 153482349 TTAATTTTGC---TCT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48112928 13 + 100215132 TTAATTTTGC---TCT
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190753809 13 - 190850796 TTAATTTTGC---TCT
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14117388 13 -  14256875 TTAATTTTGC---TCT
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3016216 13 -  10937097 TTAACTTTGC---TCC
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1501679 13 -   2937107 TTAACTTTGC---TCT
i panHod1.KE114653         C 0 C 0
s bosTau8.chr27             18217296 13 +  45407902 TTAACTTTGC---TCT
i bosTau8.chr27            C 0 C 0
s oviAri3.chr26             17843806 13 +  44077779 TTAACTTTGC---TCT
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17929276 13 +  44118849 TTAACTTTGC---TCT
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18744102 13 -  39960074 TTAGTTTTGC---TCT
i equCab2.chr27            C 0 C 0
s felCat8.chrB1             20474618 13 + 206538554 TTAACTCTTC---TCT
i felCat8.chrB1            C 0 C 0
s canFam3.chr16             18191603 13 -  59632846 TTAATTTTGC---TCT
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         749165 13 -   2017862 TTAATTTTGC---TCT
i odoRosDiv1.KB229312      C 0 C 0
s monDom5.chr5             230632461 13 - 304825324 GAAATTCTGC---CCT
i monDom5.chr5             C 0 C 0
s falChe1.KB398104           5465287 16 -   9141934 TGAAAGAAATCGCCCT
i falChe1.KB398104         I 3 C 0
s falPer1.KB390515           2967488 16 -   4376501 TGAAAGAAATCGCCCT
i falPer1.KB390515         I 3 C 0
s taeGut2.chr4              40873097 13 +  69780378 TGAAGAAAAT---TCT
i taeGut2.chr4             I 3 C 0
s melUnd1.JH556598           4026139 13 +  13137711 tgaagaaaaa---tct
i melUnd1.JH556598         I 3 C 0
s amaVit1.KB267266             44369 13 +     45143 tgaataaaaa---cct
i amaVit1.KB267266         I 3 C 0
s araMac1.KE027501              2788 13 +     16385 tgaataaaaa---cct
i araMac1.KE027501         I 3 C 0
s galGal4.chr4              62357773 14 +  90216835 --AAGACAATGACTCT
i galGal4.chr4             I 2 C 0
s melGal1.chr4              45133929 14 +  74864452 --AAGAAAACAACTCT
i melGal1.chr4             I 2 C 0
s allMis1.JH732700            227402 13 -   1095808 TGAAATCAAT---TCT
i allMis1.JH732700         I 7 C 0
s anoCar2.chr3             144852037  5 + 204416410 -----------tttct
i anoCar2.chr3             C 0 n 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55056121 830 +  59856998 I
e pseHum1.KB221303            458855 896 -   1055857 I
e zonAlb1.KB913240            786789 751 -    852449 I
e colLiv1.KB375368            172141 110 +  19163802 I
e macEug2.GL108065             83888 651 -    187545 T
e geoFor1.JH739942           1278603 862 +   5104860 I
e anaPla1.KB742960            138948 1155 +    531124 I
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=-219230.000000
s hg38.chr8_KI270814v1_alt     69683 20 +    141812 GCAAT-----------AAGGA---AA--TAT-AA------CTA
s ponAbe2.chr8              59039522 20 + 153482349 GCAAT-----------AAGGA---AA--TAT-AA------CTA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48112941 20 + 100215132 GCAAT-----------AAGGA---AA--TAT-AA------CTA
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190753822 20 - 190850796 GGAGT-----------AAGTA---AA--TAT-AA------CTA
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14117401 20 -  14256875 GGAAT-----------AAGTA---AA--TAT-AA------CTA
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3016229 20 -  10937097 GGAAT-----------AAGTA---AA--TGT-AA------CTA
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1501692 21 -   2937107 GGAATGA---------AAGTC---GA--Agt--g------cta
i panHod1.KE114653         C 0 C 0
s bosTau8.chr27             18217309 21 +  45407902 GGAATGA---------AAGTC---AA--Agt--g------cta
i bosTau8.chr27            C 0 C 0
s oviAri3.chr26             17843819 21 +  44077779 GGAATGA---------AAGTC---AA--Agt--g------cta
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17929289 21 +  44118849 GGAATGA---------AAGTC---AA--Agt--g------cta
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18744115 20 -  39960074 GGAAT-----------AAGTA---AA--TAC-AA------CTT
i equCab2.chr27            C 0 C 0
s felCat8.chrB1             20474631 20 + 206538554 GGAAT-----------AAGTA---AA--TAT-AC------CTA
i felCat8.chrB1            C 0 C 0
s canFam3.chr16             18191616 26 -  59632846 GGGAT-----------CAGTA---AA--TAT-AATATTGGTCA
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         749178 20 -   2017862 GGAAT-----------AAATA---AA--TAT-AA------TTA
i odoRosDiv1.KB229312      C 0 C 0
s monDom5.chr5             230632474 24 - 304825324 GGCAC-----------AAGTAATGAA--TGTTAA------CGA
i monDom5.chr5             C 0 C 0
s falChe1.KB398104           5465303 20 -   9141934 -----GTTTCTAGTACAAATG---AA--CA-------------
i falChe1.KB398104         C 0 I 2
s falPer1.KB390515           2967504 20 -   4376501 -----GTTTCTAGTACAAATG---AA--CA-------------
i falPer1.KB390515         C 0 I 2
s taeGut2.chr4              40873110 14 +  69780378 -----GTG--------AAATG---AAATCA-------------
i taeGut2.chr4             C 0 I 29
s melUnd1.JH556598           4026152 14 +  13137711 -----gcG--------AAATA---AAATCA-------------
i melUnd1.JH556598         C 0 n 0
s amaVit1.KB267266             44382 14 +     45143 -----gtg--------aaata---aaatca-------------
i amaVit1.KB267266         C 0 I 29
s araMac1.KE027501              2801 14 +     16385 -----gtg--------aaata---aaatca-------------
i araMac1.KE027501         C 0 I 29
s galGal4.chr4              62357787 13 +  90216835 -----AA---------ACATA---AAGTCA-------------
i galGal4.chr4             C 0 I 8
s melGal1.chr4              45133943 13 +  74864452 -----AA---------ACACA---AAGTCA-------------
i melGal1.chr4             C 0 I 13
s allMis1.JH732700            227415 18 -   1095808 -----ATGCCAGCA--AAATA---AC--CA-------------
i allMis1.JH732700         C 0 I 6
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55056121 830 +  59856998 I
e anoCar2.chr3             144852042  0 + 204416410 I
e pseHum1.KB221303            458855 896 -   1055857 I
e zonAlb1.KB913240            786789 751 -    852449 I
e colLiv1.KB375368            172141 110 +  19163802 I
e macEug2.GL108065             83888 651 -    187545 T
e geoFor1.JH739942           1278603 862 +   5104860 I
e anaPla1.KB742960            138948 1155 +    531124 I
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=-64504.000000
s hg38.chr8_KI270814v1_alt     69703  7 +    141812 CC----------AA------AAA
s ponAbe2.chr8              59039542  7 + 153482349 CC----------AA------AAA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48112961  7 + 100215132 CC----------AA------AAA
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190753842  6 - 190850796 CC-----------A------GAA
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14117421  6 -  14256875 CC-----------A------GAA
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3016249 12 -  10937097 CCAGAAATGCCC-----------
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1501713  2 -   2937107 tt---------------------
i panHod1.KE114653         C 0 C 0
s bosTau8.chr27             18217330  2 +  45407902 tt---------------------
i bosTau8.chr27            C 0 C 0
s oviAri3.chr26             17843840  2 +  44077779 tt---------------------
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17929310  2 +  44118849 tt---------------------
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18744135  7 -  39960074 CC----------AG------AAA
i equCab2.chr27            C 0 C 0
s felCat8.chrB1             20474651  7 + 206538554 CC----------AA------AAA
i felCat8.chrB1            C 0 C 0
s canFam3.chr16             18191642  7 -  59632846 TC----------AA------AAA
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         749198  7 -   2017862 CC----------AA------AAA
i odoRosDiv1.KB229312      C 0 C 0
s monDom5.chr5             230632498  7 - 304825324 TC----------AG------AAA
i monDom5.chr5             C 0 I 1244
s falChe1.KB398104           5465325 13 -   9141934 CC----------AGATAAAAATA
i falChe1.KB398104         I 2 C 0
s falPer1.KB390515           2967526 13 -   4376501 CC----------AGATAAAAATA
i falPer1.KB390515         I 2 C 0
s taeGut2.chr4              40873153  7 +  69780378 CC----------AG------AAA
i taeGut2.chr4             I 29 C 0
s amaVit1.KB267266             44425  7 +     45143 CC----------AG------AAA
i amaVit1.KB267266         I 29 C 0
s araMac1.KE027501              2844  7 +     16385 CC----------AG------AAA
i araMac1.KE027501         I 29 C 0
s galGal4.chr4              62357808  7 +  90216835 CC----------GG------CAA
i galGal4.chr4             I 8 C 0
s melGal1.chr4              45133969  7 +  74864452 CC----------AG------CAA
i melGal1.chr4             I 13 C 0
s allMis1.JH732700            227439  7 -   1095808 CC----------AG------AAA
i allMis1.JH732700         I 6 C 0
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55056121 830 +  59856998 I
e anoCar2.chr3             144852042  0 + 204416410 I
e pseHum1.KB221303            458855 896 -   1055857 I
e zonAlb1.KB913240            786789 751 -    852449 I
e colLiv1.KB375368            172141 110 +  19163802 I
e macEug2.GL108065             83888 651 -    187545 T
e geoFor1.JH739942           1278603 862 +   5104860 I
e anaPla1.KB742960            138948 1155 +    531124 I
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556598           4026166  0 +  13137711 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=7649.000000
s hg38.chr8_KI270814v1_alt     69710 4 +    141812 TGCC
s ponAbe2.chr8              59039549 4 + 153482349 TGCC
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48112968 4 + 100215132 TGCC
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190753848 4 - 190850796 TGCC
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14117427 4 -  14256875 TGCC
i saiBol1.JH378165         C 0 C 0
s equCab2.chr27             18744142 4 -  39960074 GGCC
i equCab2.chr27            C 0 I 1
s felCat8.chrB1             20474658 4 + 206538554 TGCC
i felCat8.chrB1            C 0 I 206
s canFam3.chr16             18191649 4 -  59632846 TGAC
i canFam3.chr16            C 0 I 1
s odoRosDiv1.KB229312         749205 4 -   2017862 TGAC
i odoRosDiv1.KB229312      C 0 I 1
s falChe1.KB398104           5465338 4 -   9141934 TGTC
i falChe1.KB398104         C 0 C 0
s falPer1.KB390515           2967539 4 -   4376501 TGTC
i falPer1.KB390515         C 0 C 0
s taeGut2.chr4              40873160 4 +  69780378 TATC
i taeGut2.chr4             C 0 C 0
s amaVit1.KB267266             44432 4 +     45143 TATC
i amaVit1.KB267266         C 0 C 0
s araMac1.KE027501              2851 4 +     16385 TATC
i araMac1.KE027501         C 0 C 0
s galGal4.chr4              62357815 4 +  90216835 AACA
i galGal4.chr4             C 0 C 0
s melGal1.chr4              45133976 4 +  74864452 AACA
i melGal1.chr4             C 0 C 0
s allMis1.JH732700            227446 3 -   1095808 TAC-
i allMis1.JH732700         C 0 C 0
e oviAri3.chr26             17843842 0 +  44077779 C
e bosTau8.chr27             18217332 0 +  45407902 C
e panHod1.KE114653           1501715 0 -   2937107 C
e capHir1.chr27             17929312 0 +  44118849 C
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55056121 830 +  59856998 I
e anoCar2.chr3             144852042 0 + 204416410 I
e pseHum1.KB221303            458855 896 -   1055857 I
e zonAlb1.KB913240            786789 751 -    852449 I
e colLiv1.KB375368            172141 110 +  19163802 I
e macEug2.GL108065             83888 651 -    187545 T
e geoFor1.JH739942           1278603 862 +   5104860 I
e anaPla1.KB742960            138948 1155 +    531124 I
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556598           4026166 0 +  13137711 I
e monDom5.chr5             230632505 1244 - 304825324 I
e orcOrc1.KB316932           3016261 0 -  10937097 C
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=9090.000000
s hg38.chr8_KI270814v1_alt     69714 1 +    141812 A
s ponAbe2.chr8              59039553 1 + 153482349 A
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48112972 1 + 100215132 A
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190753852 1 - 190850796 A
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14117431 1 -  14256875 A
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3016261 1 -  10937097 A
i orcOrc1.KB316932         C 0 C 0
s equCab2.chr27             18744147 1 -  39960074 G
i equCab2.chr27            I 1 C 0
s canFam3.chr16             18191654 1 -  59632846 A
i canFam3.chr16            I 1 C 0
s odoRosDiv1.KB229312         749210 1 -   2017862 A
i odoRosDiv1.KB229312      I 1 C 0
s falChe1.KB398104           5465342 1 -   9141934 A
i falChe1.KB398104         C 0 C 0
s falPer1.KB390515           2967543 1 -   4376501 A
i falPer1.KB390515         C 0 C 0
s taeGut2.chr4              40873164 1 +  69780378 A
i taeGut2.chr4             C 0 I 66
s amaVit1.KB267266             44436 1 +     45143 A
i amaVit1.KB267266         C 0 C 0
s araMac1.KE027501              2855 1 +     16385 A
i araMac1.KE027501         C 0 n 0
s galGal4.chr4              62357819 1 +  90216835 A
i galGal4.chr4             C 0 C 0
s melGal1.chr4              45133980 1 +  74864452 A
i melGal1.chr4             C 0 C 0
e felCat8.chrB1             20474662 206 + 206538554 I
e oviAri3.chr26             17843842 0 +  44077779 C
e bosTau8.chr27             18217332 0 +  45407902 C
e panHod1.KE114653           1501715 0 -   2937107 C
e capHir1.chr27             17929312 0 +  44118849 C
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55056121 830 +  59856998 I
e anoCar2.chr3             144852042 0 + 204416410 I
e pseHum1.KB221303            458855 896 -   1055857 I
e zonAlb1.KB913240            786789 751 -    852449 I
e colLiv1.KB375368            172141 110 +  19163802 I
e allMis1.JH732700            227449 0 -   1095808 C
e macEug2.GL108065             83888 651 -    187545 T
e geoFor1.JH739942           1278603 862 +   5104860 I
e anaPla1.KB742960            138948 1155 +    531124 I
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556598           4026166 0 +  13137711 I
e monDom5.chr5             230632505 1244 - 304825324 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=14942.000000
s hg38.chr8_KI270814v1_alt     69715 6 +    141812 TCGAAG
s ponAbe2.chr8              59039554 6 + 153482349 TTGAAG
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48112973 6 + 100215132 TTGAAG
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190753853 6 - 190850796 ATGAGG
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14117432 6 -  14256875 GTGAGG
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3016262 6 -  10937097 ATGAGG
i orcOrc1.KB316932         C 0 C 0
s equCab2.chr27             18744148 6 -  39960074 ACGAGG
i equCab2.chr27            C 0 C 0
s canFam3.chr16             18191655 6 -  59632846 ATGGGG
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         749211 6 -   2017862 ATGAGG
i odoRosDiv1.KB229312      C 0 C 0
s falChe1.KB398104           5465343 5 -   9141934 -TGGAG
i falChe1.KB398104         C 0 I 1
s falPer1.KB390515           2967544 5 -   4376501 -TGGAG
i falPer1.KB390515         C 0 I 1
s amaVit1.KB267266             44437 4 +     45143 --AGAC
i amaVit1.KB267266         C 0 I 1
s galGal4.chr4              62357820 6 +  90216835 GTAAAG
i galGal4.chr4             C 0 I 92
s melGal1.chr4              45133981 6 +  74864452 GCAAAG
i melGal1.chr4             C 0 I 86
s allMis1.JH732700            227449 4 -   1095808 --CGAG
i allMis1.JH732700         C 0 I 1
e felCat8.chrB1             20474662 206 + 206538554 I
e oviAri3.chr26             17843842 0 +  44077779 C
e bosTau8.chr27             18217332 0 +  45407902 C
e panHod1.KE114653           1501715 0 -   2937107 C
e capHir1.chr27             17929312 0 +  44118849 C
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE027501              2856 0 +     16385 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55056121 830 +  59856998 I
e anoCar2.chr3             144852042 0 + 204416410 I
e pseHum1.KB221303            458855 896 -   1055857 I
e zonAlb1.KB913240            786789 751 -    852449 I
e colLiv1.KB375368            172141 110 +  19163802 I
e macEug2.GL108065             83888 651 -    187545 T
e geoFor1.JH739942           1278603 862 +   5104860 I
e anaPla1.KB742960            138948 1155 +    531124 I
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556598           4026166 0 +  13137711 I
e monDom5.chr5             230632505 1244 - 304825324 I
e taeGut2.chr4              40873165 66 +  69780378 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=-19169.000000
s hg38.chr8_KI270814v1_alt     69721 31 +    141812 GTTTTAGGTTGATGCTT--ATTTGTG--------TTTCCTA
s ponAbe2.chr8              59039560 31 + 153482349 GTTTTAGGTTGATGCTT--ATTTGTG--------TTTCCTA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48112979 31 + 100215132 GTTTTAGGTTGATGCTT--ATTTGTG--------TTTCCTA
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190753859 31 - 190850796 ATGTGAAGTTGATGTTT--ATTTGTG--------TGTTCTA
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14117438 31 -  14256875 ATGTTAGGTTGATGTTT--ATTTGTG--------TGTTCTA
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3016268 24 -  10937097 ATTTCATGTTGATGCTT--ATGTGTG---------------
i orcOrc1.KB316932         C 0 I 13
s panHod1.KE114653           1501715 20 -   2937107 ------------tgctc--agttgtgtctggctg-------
i panHod1.KE114653         C 0 C 0
s bosTau8.chr27             18217332 12 +  45407902 ------------tgctc--cgtcgtg---------------
i bosTau8.chr27            C 0 C 0
s oviAri3.chr26             17843842 12 +  44077779 ------------tgctc--agtcgtg---------------
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17929312 12 +  44118849 ------------tgctc--agtcgtg---------------
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18744154 31 -  39960074 ATTTCATGTTGATGTTT--ATGTGTG--------TTCTCTA
i equCab2.chr27            C 0 C 0
s canFam3.chr16             18191661 31 -  59632846 ATTCCATATTGGTACAT--AAGAGTA--------TTCTTTA
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         749217 31 -   2017862 ATTCCAGGTTGGTGCTT--ATGCATG--------TTCTTTA
i odoRosDiv1.KB229312      C 0 C 0
s falChe1.KB398104           5465349 30 -   9141934 -GACCCAGTCAAGAATA--GATTATG--------TTCTTAC
i falChe1.KB398104         I 1 I 3
s falPer1.KB390515           2967550 30 -   4376501 -GACCCAGTCAAGAATA--GATTATG--------TTCTTAC
i falPer1.KB390515         I 1 I 3
s amaVit1.KB267266             44442 27 +     45143 -GATAGA---aaaaatt--gattatt--------tttcctc
i amaVit1.KB267266         I 1 n 1
s allMis1.JH732700            227454 32 -   1095808 -GACCTAGACAAAAATAATGATTTTT--------TTTCTTC
i allMis1.JH732700         I 1 I 9
e felCat8.chrB1             20474662 206 + 206538554 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE027501              2856  0 +     16385 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55056121 830 +  59856998 I
e anoCar2.chr3             144852042  0 + 204416410 I
e pseHum1.KB221303            458855 896 -   1055857 I
e zonAlb1.KB913240            786789 751 -    852449 I
e colLiv1.KB375368            172141 110 +  19163802 I
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr4              62357826 92 +  90216835 I
e geoFor1.JH739942           1278603 862 +   5104860 I
e melGal1.chr4              45133987 86 +  74864452 I
e anaPla1.KB742960            138948 1155 +    531124 I
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556598           4026166  0 +  13137711 I
e monDom5.chr5             230632505 1244 - 304825324 I
e taeGut2.chr4              40873165 66 +  69780378 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=2865.000000
s hg38.chr8_KI270814v1_alt     69752 1 +    141812 A
s ponAbe2.chr8              59039591 1 + 153482349 A
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48113010 1 + 100215132 A
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190753890 1 - 190850796 A
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14117469 1 -  14256875 A
i saiBol1.JH378165         C 0 C 0
s equCab2.chr27             18744185 1 -  39960074 A
i equCab2.chr27            C 0 C 0
s canFam3.chr16             18191692 1 -  59632846 A
i canFam3.chr16            C 0 I 28
s odoRosDiv1.KB229312         749248 1 -   2017862 A
i odoRosDiv1.KB229312      C 0 C 0
s falChe1.KB398104           5465382 1 -   9141934 A
i falChe1.KB398104         I 3 C 0
s falPer1.KB390515           2967583 1 -   4376501 A
i falPer1.KB390515         I 3 C 0
s allMis1.JH732700            227495 1 -   1095808 T
i allMis1.JH732700         I 9 C 0
e felCat8.chrB1             20474662 206 + 206538554 I
e oviAri3.chr26             17843854 0 +  44077779 C
e bosTau8.chr27             18217344 0 +  45407902 C
e panHod1.KE114653           1501735 0 -   2937107 C
e capHir1.chr27             17929324 0 +  44118849 C
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE027501              2856 0 +     16385 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55056121 830 +  59856998 I
e anoCar2.chr3             144852042 0 + 204416410 I
e pseHum1.KB221303            458855 896 -   1055857 I
e zonAlb1.KB913240            786789 751 -    852449 I
e colLiv1.KB375368            172141 110 +  19163802 I
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr4              62357826 92 +  90216835 I
e geoFor1.JH739942           1278603 862 +   5104860 I
e melGal1.chr4              45133987 86 +  74864452 I
e anaPla1.KB742960            138948 1155 +    531124 I
e amaVit1.KB267266             44469 1 +     45143 I
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556598           4026166 0 +  13137711 I
e monDom5.chr5             230632505 1244 - 304825324 I
e taeGut2.chr4              40873165 66 +  69780378 I
e orcOrc1.KB316932           3016292 13 -  10937097 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=1927.000000
s hg38.chr8_KI270814v1_alt     69753 5 +    141812 TCTGT--
s ponAbe2.chr8              59039592 5 + 153482349 TCTGT--
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48113011 5 + 100215132 TCTGT--
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190753891 5 - 190850796 TCTGT--
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14117470 5 -  14256875 TCTGT--
i saiBol1.JH378165         C 0 C 0
s panHod1.KE114653           1501735 5 -   2937107 tttgt--
i panHod1.KE114653         C 0 I 24
s equCab2.chr27             18744186 5 -  39960074 CCTGT--
i equCab2.chr27            C 0 C 0
s odoRosDiv1.KB229312         749249 5 -   2017862 CCTGT--
i odoRosDiv1.KB229312      C 0 C 0
s falChe1.KB398104           5465383 5 -   9141934 --TATGC
i falChe1.KB398104         C 0 C 0
s falPer1.KB390515           2967584 5 -   4376501 --TATGC
i falPer1.KB390515         C 0 C 0
s allMis1.JH732700            227496 5 -   1095808 --TGGAC
i allMis1.JH732700         C 0 C 0
e canFam3.chr16             18191693 28 -  59632846 I
e felCat8.chrB1             20474662 206 + 206538554 I
e oviAri3.chr26             17843854 0 +  44077779 C
e bosTau8.chr27             18217344 0 +  45407902 C
e capHir1.chr27             17929324 0 +  44118849 C
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE027501              2856 0 +     16385 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55056121 830 +  59856998 I
e anoCar2.chr3             144852042 0 + 204416410 I
e pseHum1.KB221303            458855 896 -   1055857 I
e zonAlb1.KB913240            786789 751 -    852449 I
e colLiv1.KB375368            172141 110 +  19163802 I
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr4              62357826 92 +  90216835 I
e geoFor1.JH739942           1278603 862 +   5104860 I
e melGal1.chr4              45133987 86 +  74864452 I
e anaPla1.KB742960            138948 1155 +    531124 I
e amaVit1.KB267266             44469 1 +     45143 I
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556598           4026166 0 +  13137711 I
e monDom5.chr5             230632505 1244 - 304825324 I
e taeGut2.chr4              40873165 66 +  69780378 I
e orcOrc1.KB316932           3016292 13 -  10937097 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=5005.000000
s hg38.chr8_KI270814v1_alt     69758 1 +    141812 A
s ponAbe2.chr8              59039597 1 + 153482349 A
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48113016 1 + 100215132 A
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190753896 1 - 190850796 A
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14117475 1 -  14256875 A
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3016305 1 -  10937097 A
i orcOrc1.KB316932         I 13 C 0
s equCab2.chr27             18744191 1 -  39960074 A
i equCab2.chr27            C 0 C 0
s odoRosDiv1.KB229312         749254 1 -   2017862 A
i odoRosDiv1.KB229312      C 0 I 21
s falChe1.KB398104           5465388 1 -   9141934 A
i falChe1.KB398104         C 0 C 0
s falPer1.KB390515           2967589 1 -   4376501 A
i falPer1.KB390515         C 0 C 0
s allMis1.JH732700            227501 1 -   1095808 A
i allMis1.JH732700         C 0 C 0
e canFam3.chr16             18191693 28 -  59632846 I
e felCat8.chrB1             20474662 206 + 206538554 I
e oviAri3.chr26             17843854 0 +  44077779 C
e bosTau8.chr27             18217344 0 +  45407902 C
e panHod1.KE114653           1501740 24 -   2937107 I
e capHir1.chr27             17929324 0 +  44118849 C
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE027501              2856 0 +     16385 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55056121 830 +  59856998 I
e anoCar2.chr3             144852042 0 + 204416410 I
e pseHum1.KB221303            458855 896 -   1055857 I
e zonAlb1.KB913240            786789 751 -    852449 I
e colLiv1.KB375368            172141 110 +  19163802 I
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr4              62357826 92 +  90216835 I
e geoFor1.JH739942           1278603 862 +   5104860 I
e melGal1.chr4              45133987 86 +  74864452 I
e anaPla1.KB742960            138948 1155 +    531124 I
e amaVit1.KB267266             44469 1 +     45143 I
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556598           4026166 0 +  13137711 I
e monDom5.chr5             230632505 1244 - 304825324 I
e taeGut2.chr4              40873165 66 +  69780378 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=4500.000000
s hg38.chr8_KI270814v1_alt     69759 1 +    141812 G
s ponAbe2.chr8              59039598 1 + 153482349 G
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48113017 1 + 100215132 G
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190753897 1 - 190850796 G
i calJac3.chr3             C 0 I 4
s saiBol1.JH378165          14117476 1 -  14256875 G
i saiBol1.JH378165         C 0 I 4
s orcOrc1.KB316932           3016306 1 -  10937097 G
i orcOrc1.KB316932         C 0 I 19
s equCab2.chr27             18744192 1 -  39960074 G
i equCab2.chr27            C 0 C 0
s falChe1.KB398104           5465389 1 -   9141934 G
i falChe1.KB398104         C 0 C 0
s falPer1.KB390515           2967590 1 -   4376501 G
i falPer1.KB390515         C 0 C 0
s allMis1.JH732700            227502 1 -   1095808 G
i allMis1.JH732700         C 0 C 0
e odoRosDiv1.KB229312         749255 21 -   2017862 I
e canFam3.chr16             18191693 28 -  59632846 I
e felCat8.chrB1             20474662 206 + 206538554 I
e oviAri3.chr26             17843854 0 +  44077779 C
e bosTau8.chr27             18217344 0 +  45407902 C
e panHod1.KE114653           1501740 24 -   2937107 I
e capHir1.chr27             17929324 0 +  44118849 C
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE027501              2856 0 +     16385 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55056121 830 +  59856998 I
e anoCar2.chr3             144852042 0 + 204416410 I
e pseHum1.KB221303            458855 896 -   1055857 I
e zonAlb1.KB913240            786789 751 -    852449 I
e colLiv1.KB375368            172141 110 +  19163802 I
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr4              62357826 92 +  90216835 I
e geoFor1.JH739942           1278603 862 +   5104860 I
e melGal1.chr4              45133987 86 +  74864452 I
e anaPla1.KB742960            138948 1155 +    531124 I
e amaVit1.KB267266             44469 1 +     45143 I
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556598           4026166 0 +  13137711 I
e monDom5.chr5             230632505 1244 - 304825324 I
e taeGut2.chr4              40873165 66 +  69780378 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=-2531.000000
s hg38.chr8_KI270814v1_alt     69760 4 +    141812 -ATAG
s ponAbe2.chr8              59039599 4 + 153482349 -ATAG
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48113018 4 + 100215132 -ATAG
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190753902 4 - 190850796 -ATAG
i calJac3.chr3             I 4 C 0
s saiBol1.JH378165          14117481 4 -  14256875 -ATAG
i saiBol1.JH378165         I 4 C 0
s equCab2.chr27             18744193 4 -  39960074 -GTAG
i equCab2.chr27            C 0 I 4
s falChe1.KB398104           5465390 4 -   9141934 CTTG-
i falChe1.KB398104         C 0 C 0
s falPer1.KB390515           2967591 4 -   4376501 CTTG-
i falPer1.KB390515         C 0 C 0
s allMis1.JH732700            227503 4 -   1095808 CATG-
i allMis1.JH732700         C 0 I 17
e odoRosDiv1.KB229312         749255 21 -   2017862 I
e canFam3.chr16             18191693 28 -  59632846 I
e felCat8.chrB1             20474662 206 + 206538554 I
e oviAri3.chr26             17843854 0 +  44077779 C
e bosTau8.chr27             18217344 0 +  45407902 C
e panHod1.KE114653           1501740 24 -   2937107 I
e capHir1.chr27             17929324 0 +  44118849 C
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE027501              2856 0 +     16385 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55056121 830 +  59856998 I
e anoCar2.chr3             144852042 0 + 204416410 I
e pseHum1.KB221303            458855 896 -   1055857 I
e zonAlb1.KB913240            786789 751 -    852449 I
e colLiv1.KB375368            172141 110 +  19163802 I
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr4              62357826 92 +  90216835 I
e geoFor1.JH739942           1278603 862 +   5104860 I
e melGal1.chr4              45133987 86 +  74864452 I
e anaPla1.KB742960            138948 1155 +    531124 I
e amaVit1.KB267266             44469 1 +     45143 I
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556598           4026166 0 +  13137711 I
e monDom5.chr5             230632505 1244 - 304825324 I
e taeGut2.chr4              40873165 66 +  69780378 I
e orcOrc1.KB316932           3016307 19 -  10937097 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=4480.000000
s hg38.chr8_KI270814v1_alt     69764 4 +    141812 CAGG
s ponAbe2.chr8              59039603 4 + 153482349 CAAG
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48113022 4 + 100215132 CAAG
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190753906 4 - 190850796 CAAG
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14117485 4 -  14256875 CAAA
i saiBol1.JH378165         C 0 C 0
s falChe1.KB398104           5465394 4 -   9141934 TAGG
i falChe1.KB398104         C 0 n 0
s falPer1.KB390515           2967595 4 -   4376501 TAGG
i falPer1.KB390515         C 0 n 0
e odoRosDiv1.KB229312         749255 21 -   2017862 I
e canFam3.chr16             18191693 28 -  59632846 I
e felCat8.chrB1             20474662 206 + 206538554 I
e oviAri3.chr26             17843854 0 +  44077779 C
e bosTau8.chr27             18217344 0 +  45407902 C
e panHod1.KE114653           1501740 24 -   2937107 I
e capHir1.chr27             17929324 0 +  44118849 C
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE027501              2856 0 +     16385 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55056121 830 +  59856998 I
e anoCar2.chr3             144852042 0 + 204416410 I
e pseHum1.KB221303            458855 896 -   1055857 I
e zonAlb1.KB913240            786789 751 -    852449 I
e colLiv1.KB375368            172141 110 +  19163802 I
e allMis1.JH732700            227507 17 -   1095808 I
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr4              62357826 92 +  90216835 I
e geoFor1.JH739942           1278603 862 +   5104860 I
e melGal1.chr4              45133987 86 +  74864452 I
e anaPla1.KB742960            138948 1155 +    531124 I
e amaVit1.KB267266             44469 1 +     45143 I
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556598           4026166 0 +  13137711 I
e monDom5.chr5             230632505 1244 - 304825324 I
e taeGut2.chr4              40873165 66 +  69780378 I
e equCab2.chr27             18744197 4 -  39960074 I
e orcOrc1.KB316932           3016307 19 -  10937097 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=1000.000000
s hg38.chr8_KI270814v1_alt     69768 1 +    141812 G
s ponAbe2.chr8              59039607 1 + 153482349 G
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48113026 1 + 100215132 G
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190753910 1 - 190850796 G
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14117489 1 -  14256875 G
i saiBol1.JH378165         C 0 C 0
e odoRosDiv1.KB229312         749255 21 -   2017862 I
e canFam3.chr16             18191693 28 -  59632846 I
e felCat8.chrB1             20474662 206 + 206538554 I
e oviAri3.chr26             17843854 0 +  44077779 C
e bosTau8.chr27             18217344 0 +  45407902 C
e panHod1.KE114653           1501740 24 -   2937107 I
e capHir1.chr27             17929324 0 +  44118849 C
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE027501              2856 0 +     16385 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55056121 830 +  59856998 I
e anoCar2.chr3             144852042 0 + 204416410 I
e pseHum1.KB221303            458855 896 -   1055857 I
e zonAlb1.KB913240            786789 751 -    852449 I
e colLiv1.KB375368            172141 110 +  19163802 I
e allMis1.JH732700            227507 17 -   1095808 I
e falPer1.KB390515           2967599 0 -   4376501 I
e falChe1.KB398104           5465398 0 -   9141934 I
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr4              62357826 92 +  90216835 I
e geoFor1.JH739942           1278603 862 +   5104860 I
e melGal1.chr4              45133987 86 +  74864452 I
e anaPla1.KB742960            138948 1155 +    531124 I
e amaVit1.KB267266             44469 1 +     45143 I
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556598           4026166 0 +  13137711 I
e monDom5.chr5             230632505 1244 - 304825324 I
e taeGut2.chr4              40873165 66 +  69780378 I
e equCab2.chr27             18744197 4 -  39960074 I
e orcOrc1.KB316932           3016307 19 -  10937097 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=7756.000000
s hg38.chr8_KI270814v1_alt     69769 40 +    141812 TCtttttttaaatttttattttttgttttggtacagggtc
s ponAbe2.chr8              59039608 40 + 153482349 TCTTTTTTAAAAtttttattttttgttttggtacagggtc
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48113027 40 + 100215132 TCtttttttaaatttttattttttgttttggtacagggtc
i nomLeu3.chr16            C 0 C 0
s bosTau8.chr27             18217344 12 +  45407902 -------------tctgactctttg---------------
i bosTau8.chr27            C 0 C 0
s oviAri3.chr26             17843854 12 +  44077779 -------------tctgactctttg---------------
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17929324 12 +  44118849 -------------tctgactctttg---------------
i capHir1.chr27            C 0 C 0
e odoRosDiv1.KB229312         749255 21 -   2017862 I
e canFam3.chr16             18191693 28 -  59632846 I
e felCat8.chrB1             20474662 206 + 206538554 I
e panHod1.KE114653           1501740 24 -   2937107 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE027501              2856  0 +     16385 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55056121 830 +  59856998 I
e anoCar2.chr3             144852042  0 + 204416410 I
e pseHum1.KB221303            458855 896 -   1055857 I
e zonAlb1.KB913240            786789 751 -    852449 I
e colLiv1.KB375368            172141 110 +  19163802 I
e allMis1.JH732700            227507 17 -   1095808 I
e falPer1.KB390515           2967599  0 -   4376501 I
e falChe1.KB398104           5465398  0 -   9141934 I
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr4              62357826 92 +  90216835 I
e geoFor1.JH739942           1278603 862 +   5104860 I
e melGal1.chr4              45133987 86 +  74864452 I
e anaPla1.KB742960            138948 1155 +    531124 I
e amaVit1.KB267266             44469  1 +     45143 I
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e calJac3.chr3             190753911  0 - 190850796 C
e melUnd1.JH556598           4026166  0 +  13137711 I
e monDom5.chr5             230632505 1244 - 304825324 I
e taeGut2.chr4              40873165 66 +  69780378 I
e equCab2.chr27             18744197  4 -  39960074 I
e orcOrc1.KB316932           3016307 19 -  10937097 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e saiBol1.JH378165          14117490  0 -  14256875 C
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=88482.000000
s hg38.chr8_KI270814v1_alt     69809 150 +    141812 ggctttgttgcccacttgg----------------agtgtagt---ggcacaaccttggctcactgcaaccttctcctgaagtacatatta----------gctcacctgggctcaagtgatcctcccacctcagtctt-----ttgagtatctgggattattggca--------------tgtgccaccaag-----ccttg
s ponAbe2.chr8              59039648 150 + 153482349 ggctttgttgcccacctgg----------------agtgtagt---ggcacaaccttggctcactgcaaccttctcctgaagtacatatta----------cctcacctgggctcaagtgatcctcccacctcagtctt-----ttgagtatctgggattataggca--------------tgtgccaccaag-----ccttg
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48113067 150 + 100215132 ggctttgctgcccacctgg----------------agtgtagt---ggcacaaccttggctcactgcaaccttctcctgaagtacatatta----------gctcacctgggctcaagtgatcctcccacctcagtctt-----ttgagtatctgggattataggca--------------tgtgccaccaag-----cctgg
i nomLeu3.chr16            C 0 C 0
s panHod1.KE114653           1501764 151 -   2937107 ggctcctctgcccacaggattctccagacaagaatactgcagtgggctgcca--ttcccttctccaagggatcttc-------------------------ccaatcc--------ggggat--------------gaaaa---ccaggtctcctgcactgcaggcagattctttactatctgagccaccagggaagccctTG
i panHod1.KE114653         I 24 C 0
s bosTau8.chr27             18217356 176 +  45407902 --------tgaccccatgg----------------actgtagc---ctcccaggttcctctgtccacgggattctccagacaagaatactgcagtgggctgccattccctcctccaagggatcttcccaatccagggatgaaacccgggtctcctgcattgcaggcagattctttactatctgagccaccagagaagccctTG
i bosTau8.chr27            C 0 I 102
s oviAri3.chr26             17843866 176 +  44077779 --------tgtccccatgg----------------actgtagc---ctcccaggttcctctgcccacaggattctccagacaagaatactgcagtgggctgccattctcttctccaagggatgttcccaatccagggatgaaagccaggtctcctgcattgcaggcagattctttactatctgagccaccagggaagccctTG
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17929336 176 +  44118849 --------tgaccccatgg----------------actgtagc---ctcccaggttcctctgtccacgggattctccagacaagaatactgcagtgggctgccattcccttctccaagggatcttcccaatccagggatgaaagccgggtctcctgcattgcaggcagattctgtactatctgagccaccagggaagccctTG
i capHir1.chr27            C 0 C 0
e odoRosDiv1.KB229312         749255  21 -   2017862 I
e canFam3.chr16             18191693  28 -  59632846 I
e felCat8.chrB1             20474662 206 + 206538554 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE027501              2856   0 +     16385 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55056121 830 +  59856998 I
e anoCar2.chr3             144852042   0 + 204416410 I
e pseHum1.KB221303            458855 896 -   1055857 I
e zonAlb1.KB913240            786789 751 -    852449 I
e colLiv1.KB375368            172141 110 +  19163802 I
e allMis1.JH732700            227507  17 -   1095808 I
e falPer1.KB390515           2967599   0 -   4376501 I
e falChe1.KB398104           5465398   0 -   9141934 I
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr4              62357826  92 +  90216835 I
e geoFor1.JH739942           1278603 862 +   5104860 I
e melGal1.chr4              45133987  86 +  74864452 I
e anaPla1.KB742960            138948 1155 +    531124 I
e amaVit1.KB267266             44469   1 +     45143 I
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e calJac3.chr3             190753911   0 - 190850796 C
e melUnd1.JH556598           4026166   0 +  13137711 I
e monDom5.chr5             230632505 1244 - 304825324 I
e taeGut2.chr4              40873165  66 +  69780378 I
e equCab2.chr27             18744197   4 -  39960074 I
e orcOrc1.KB316932           3016307  19 -  10937097 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e saiBol1.JH378165          14117490   0 -  14256875 C
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=2865.000000
s hg38.chr8_KI270814v1_alt     69959 2 +    141812 ct
s ponAbe2.chr8              59039798 2 + 153482349 ct
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48113217 2 + 100215132 ct
i nomLeu3.chr16            C 0 C 0
s panHod1.KE114653           1501915 2 -   2937107 CT
i panHod1.KE114653         C 0 I 87
s oviAri3.chr26             17844042 2 +  44077779 CT
i oviAri3.chr26            C 0 I 87
s capHir1.chr27             17929512 2 +  44118849 CT
i capHir1.chr27            C 0 I 87
e odoRosDiv1.KB229312         749255 21 -   2017862 I
e canFam3.chr16             18191693 28 -  59632846 I
e felCat8.chrB1             20474662 206 + 206538554 I
e bosTau8.chr27             18217532 102 +  45407902 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE027501              2856 0 +     16385 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55056121 830 +  59856998 I
e anoCar2.chr3             144852042 0 + 204416410 I
e pseHum1.KB221303            458855 896 -   1055857 I
e zonAlb1.KB913240            786789 751 -    852449 I
e colLiv1.KB375368            172141 110 +  19163802 I
e allMis1.JH732700            227507 17 -   1095808 I
e falPer1.KB390515           2967599 0 -   4376501 I
e falChe1.KB398104           5465398 0 -   9141934 I
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr4              62357826 92 +  90216835 I
e geoFor1.JH739942           1278603 862 +   5104860 I
e melGal1.chr4              45133987 86 +  74864452 I
e anaPla1.KB742960            138948 1155 +    531124 I
e amaVit1.KB267266             44469 1 +     45143 I
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e calJac3.chr3             190753911 0 - 190850796 C
e melUnd1.JH556598           4026166 0 +  13137711 I
e monDom5.chr5             230632505 1244 - 304825324 I
e taeGut2.chr4              40873165 66 +  69780378 I
e equCab2.chr27             18744197 4 -  39960074 I
e orcOrc1.KB316932           3016307 19 -  10937097 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e saiBol1.JH378165          14117490 0 -  14256875 C
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=34905.000000
s hg38.chr8_KI270814v1_alt     69961 125 +    141812 aatttttgtattttttgtagacacaggattttgccacgttggccagatttgtcttgaactcctaagctccagtgatccacccaccttggcctcccaaagtgctaggattacacgtgtcaccatcg
s ponAbe2.chr8              59039800 125 + 153482349 aatttttgtattttttgtagacacaggattttgccacattggccaggtttgtcttgaactcctaagctccagtgatccacccactttggcctcccaaagtgctaggattacacgtgtcaccatcg
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48113219 125 + 100215132 aatttttgtattttttgtagacacaggattttgccacgttggccaggtttgtcttgaactcctaagctccagtgatccacccaccttggcctcccaaagtgctaggattacacgtgtcaccatcg
i nomLeu3.chr16            C 0 C 0
e odoRosDiv1.KB229312         749255  21 -   2017862 I
e canFam3.chr16             18191693  28 -  59632846 I
e felCat8.chrB1             20474662 206 + 206538554 I
e oviAri3.chr26             17844044  87 +  44077779 I
e bosTau8.chr27             18217532 102 +  45407902 I
e panHod1.KE114653           1501917  87 -   2937107 I
e capHir1.chr27             17929514  87 +  44118849 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE027501              2856   0 +     16385 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55056121 830 +  59856998 I
e anoCar2.chr3             144852042   0 + 204416410 I
e pseHum1.KB221303            458855 896 -   1055857 I
e zonAlb1.KB913240            786789 751 -    852449 I
e colLiv1.KB375368            172141 110 +  19163802 I
e allMis1.JH732700            227507  17 -   1095808 I
e falPer1.KB390515           2967599   0 -   4376501 I
e falChe1.KB398104           5465398   0 -   9141934 I
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr4              62357826  92 +  90216835 I
e geoFor1.JH739942           1278603 862 +   5104860 I
e melGal1.chr4              45133987  86 +  74864452 I
e anaPla1.KB742960            138948 1155 +    531124 I
e amaVit1.KB267266             44469   1 +     45143 I
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e calJac3.chr3             190753911   0 - 190850796 C
e melUnd1.JH556598           4026166   0 +  13137711 I
e monDom5.chr5             230632505 1244 - 304825324 I
e taeGut2.chr4              40873165  66 +  69780378 I
e equCab2.chr27             18744197   4 -  39960074 I
e orcOrc1.KB316932           3016307  19 -  10937097 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e saiBol1.JH378165          14117490   0 -  14256875 C
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=1146.000000
s hg38.chr8_KI270814v1_alt     70086 2 +    141812 tg
s ponAbe2.chr8              59039925 2 + 153482349 tg
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48113344 2 + 100215132 tg
i nomLeu3.chr16            C 0 C 0
s colLiv1.KB375368            172251 2 +  19163802 TG
i colLiv1.KB375368         I 110 C 0
e odoRosDiv1.KB229312         749255 21 -   2017862 I
e canFam3.chr16             18191693 28 -  59632846 I
e felCat8.chrB1             20474662 206 + 206538554 I
e oviAri3.chr26             17844044 87 +  44077779 I
e bosTau8.chr27             18217532 102 +  45407902 I
e panHod1.KE114653           1501917 87 -   2937107 I
e capHir1.chr27             17929514 87 +  44118849 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE027501              2856 0 +     16385 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55056121 830 +  59856998 I
e anoCar2.chr3             144852042 0 + 204416410 I
e pseHum1.KB221303            458855 896 -   1055857 I
e zonAlb1.KB913240            786789 751 -    852449 I
e allMis1.JH732700            227507 17 -   1095808 I
e falPer1.KB390515           2967599 0 -   4376501 I
e falChe1.KB398104           5465398 0 -   9141934 I
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr4              62357826 92 +  90216835 I
e geoFor1.JH739942           1278603 862 +   5104860 I
e melGal1.chr4              45133987 86 +  74864452 I
e anaPla1.KB742960            138948 1155 +    531124 I
e amaVit1.KB267266             44469 1 +     45143 I
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e calJac3.chr3             190753911 0 - 190850796 C
e melUnd1.JH556598           4026166 0 +  13137711 I
e monDom5.chr5             230632505 1244 - 304825324 I
e taeGut2.chr4              40873165 66 +  69780378 I
e equCab2.chr27             18744197 4 -  39960074 I
e orcOrc1.KB316932           3016307 19 -  10937097 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e saiBol1.JH378165          14117490 0 -  14256875 C
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=1930.000000
s hg38.chr8_KI270814v1_alt     70088 6 +    141812 gccaac
s ponAbe2.chr8              59039927 6 + 153482349 cccagc
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48113346 6 + 100215132 cccagc
i nomLeu3.chr16            C 0 C 0
s monDom5.chr5             230633749 6 - 304825324 GACAAC
i monDom5.chr5             I 1244 C 0
s colLiv1.KB375368            172253 6 +  19163802 GACAAT
i colLiv1.KB375368         C 0 C 0
e odoRosDiv1.KB229312         749255 21 -   2017862 I
e canFam3.chr16             18191693 28 -  59632846 I
e felCat8.chrB1             20474662 206 + 206538554 I
e oviAri3.chr26             17844044 87 +  44077779 I
e bosTau8.chr27             18217532 102 +  45407902 I
e panHod1.KE114653           1501917 87 -   2937107 I
e capHir1.chr27             17929514 87 +  44118849 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE027501              2856 0 +     16385 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55056121 830 +  59856998 I
e anoCar2.chr3             144852042 0 + 204416410 I
e pseHum1.KB221303            458855 896 -   1055857 I
e zonAlb1.KB913240            786789 751 -    852449 I
e allMis1.JH732700            227507 17 -   1095808 I
e falPer1.KB390515           2967599 0 -   4376501 I
e falChe1.KB398104           5465398 0 -   9141934 I
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr4              62357826 92 +  90216835 I
e geoFor1.JH739942           1278603 862 +   5104860 I
e melGal1.chr4              45133987 86 +  74864452 I
e anaPla1.KB742960            138948 1155 +    531124 I
e amaVit1.KB267266             44469 1 +     45143 I
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e calJac3.chr3             190753911 0 - 190850796 C
e melUnd1.JH556598           4026166 0 +  13137711 I
e taeGut2.chr4              40873165 66 +  69780378 I
e equCab2.chr27             18744197 4 -  39960074 I
e orcOrc1.KB316932           3016307 19 -  10937097 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e saiBol1.JH378165          14117490 0 -  14256875 C
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=-880.000000
s hg38.chr8_KI270814v1_alt     70094 1 +    141812 -c
s ponAbe2.chr8              59039933 1 + 153482349 -c
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48113352 1 + 100215132 -c
i nomLeu3.chr16            C 0 C 0
s panHod1.KE114653           1502004 1 -   2937107 -C
i panHod1.KE114653         I 87 C 0
s oviAri3.chr26             17844131 1 +  44077779 -C
i oviAri3.chr26            I 87 C 0
s capHir1.chr27             17929601 1 +  44118849 -C
i capHir1.chr27            I 87 C 0
s equCab2.chr27             18744201 1 -  39960074 -C
i equCab2.chr27            I 4 C 0
s monDom5.chr5             230633755 1 - 304825324 -C
i monDom5.chr5             C 0 C 0
s colLiv1.KB375368            172259 1 +  19163802 A-
i colLiv1.KB375368         C 0 C 0
e odoRosDiv1.KB229312         749255 21 -   2017862 I
e canFam3.chr16             18191693 28 -  59632846 I
e felCat8.chrB1             20474662 206 + 206538554 I
e bosTau8.chr27             18217532 102 +  45407902 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE027501              2856 0 +     16385 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55056121 830 +  59856998 I
e anoCar2.chr3             144852042 0 + 204416410 I
e pseHum1.KB221303            458855 896 -   1055857 I
e zonAlb1.KB913240            786789 751 -    852449 I
e allMis1.JH732700            227507 17 -   1095808 I
e falPer1.KB390515           2967599 0 -   4376501 I
e falChe1.KB398104           5465398 0 -   9141934 I
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr4              62357826 92 +  90216835 I
e geoFor1.JH739942           1278603 862 +   5104860 I
e melGal1.chr4              45133987 86 +  74864452 I
e anaPla1.KB742960            138948 1155 +    531124 I
e amaVit1.KB267266             44469 1 +     45143 I
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e calJac3.chr3             190753911 0 - 190850796 C
e melUnd1.JH556598           4026166 0 +  13137711 I
e taeGut2.chr4              40873165 66 +  69780378 I
e orcOrc1.KB316932           3016307 19 -  10937097 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e saiBol1.JH378165          14117490 0 -  14256875 C
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=8263.000000
s hg38.chr8_KI270814v1_alt     70095 7 +    141812 AGCAAGC
s ponAbe2.chr8              59039934 7 + 153482349 AGCAAGC
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48113353 7 + 100215132 AGCAAGC
i nomLeu3.chr16            C 0 C 0
s panHod1.KE114653           1502005 7 -   2937107 AGGAAGA
i panHod1.KE114653         C 0 C 0
s oviAri3.chr26             17844132 7 +  44077779 AGGAAGA
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17929602 7 +  44118849 AGGAAGA
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18744202 7 -  39960074 AGGAAGA
i equCab2.chr27            C 0 C 0
s canFam3.chr16             18191721 7 -  59632846 AGGAAGA
i canFam3.chr16            I 28 C 0
s monDom5.chr5             230633756 5 - 304825324 TACAA--
i monDom5.chr5             C 0 C 0
s colLiv1.KB375368            172260 7 +  19163802 TGAAGGC
i colLiv1.KB375368         C 0 C 0
e odoRosDiv1.KB229312         749255 21 -   2017862 I
e felCat8.chrB1             20474662 206 + 206538554 I
e bosTau8.chr27             18217532 102 +  45407902 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE027501              2856 0 +     16385 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55056121 830 +  59856998 I
e anoCar2.chr3             144852042 0 + 204416410 I
e pseHum1.KB221303            458855 896 -   1055857 I
e zonAlb1.KB913240            786789 751 -    852449 I
e allMis1.JH732700            227507 17 -   1095808 I
e falPer1.KB390515           2967599 0 -   4376501 I
e falChe1.KB398104           5465398 0 -   9141934 I
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr4              62357826 92 +  90216835 I
e geoFor1.JH739942           1278603 862 +   5104860 I
e melGal1.chr4              45133987 86 +  74864452 I
e anaPla1.KB742960            138948 1155 +    531124 I
e amaVit1.KB267266             44469 1 +     45143 I
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e calJac3.chr3             190753911 0 - 190850796 C
e melUnd1.JH556598           4026166 0 +  13137711 I
e taeGut2.chr4              40873165 66 +  69780378 I
e orcOrc1.KB316932           3016307 19 -  10937097 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e saiBol1.JH378165          14117490 0 -  14256875 C
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=-2699.000000
s hg38.chr8_KI270814v1_alt     70102 6 +    141812 TCTCTT---
s ponAbe2.chr8              59039941 6 + 153482349 TCTCTT---
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48113360 6 + 100215132 TCTCTT---
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190753911 6 - 190850796 TCTCTT---
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14117490 6 -  14256875 TCTCTT---
i saiBol1.JH378165         C 0 C 0
s panHod1.KE114653           1502012 3 -   2937107 TCC------
i panHod1.KE114653         C 0 C 0
s oviAri3.chr26             17844139 3 +  44077779 TCC------
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17929609 3 +  44118849 TCC------
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18744209 6 -  39960074 CCTCTT---
i equCab2.chr27            C 0 C 0
s canFam3.chr16             18191728 6 -  59632846 TCCCCT---
i canFam3.chr16            C 0 C 0
s colLiv1.KB375368            172267 6 +  19163802 ---ACTATG
i colLiv1.KB375368         C 0 I 3
e odoRosDiv1.KB229312         749255 21 -   2017862 I
e felCat8.chrB1             20474662 206 + 206538554 I
e bosTau8.chr27             18217532 102 +  45407902 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE027501              2856 0 +     16385 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55056121 830 +  59856998 I
e anoCar2.chr3             144852042 0 + 204416410 I
e pseHum1.KB221303            458855 896 -   1055857 I
e zonAlb1.KB913240            786789 751 -    852449 I
e allMis1.JH732700            227507 17 -   1095808 I
e falPer1.KB390515           2967599 0 -   4376501 I
e falChe1.KB398104           5465398 0 -   9141934 I
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr4              62357826 92 +  90216835 I
e geoFor1.JH739942           1278603 862 +   5104860 I
e melGal1.chr4              45133987 86 +  74864452 I
e anaPla1.KB742960            138948 1155 +    531124 I
e amaVit1.KB267266             44469 1 +     45143 I
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556598           4026166 0 +  13137711 I
e monDom5.chr5             230633761 0 - 304825324 C
e taeGut2.chr4              40873165 66 +  69780378 I
e orcOrc1.KB316932           3016307 19 -  10937097 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=5885.000000
s hg38.chr8_KI270814v1_alt     70108 3 +    141812 TTA
s ponAbe2.chr8              59039947 3 + 153482349 GTA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48113366 3 + 100215132 TCA
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190753917 3 - 190850796 TTA
i calJac3.chr3             C 0 I 4
s saiBol1.JH378165          14117496 3 -  14256875 TTA
i saiBol1.JH378165         C 0 I 4
s equCab2.chr27             18744215 3 -  39960074 TTA
i equCab2.chr27            C 0 I 4
s canFam3.chr16             18191734 3 -  59632846 TTA
i canFam3.chr16            C 0 I 4
s monDom5.chr5             230633761 3 - 304825324 TTA
i monDom5.chr5             C 0 C 0
s colLiv1.KB375368            172276 3 +  19163802 TCC
i colLiv1.KB375368         I 3 C 0
s galGal4.chr4              62357918 3 +  90216835 TTC
i galGal4.chr4             I 92 C 0
s melGal1.chr4              45134073 3 +  74864452 TTC
i melGal1.chr4             I 86 C 0
e odoRosDiv1.KB229312         749255 21 -   2017862 I
e felCat8.chrB1             20474662 206 + 206538554 I
e oviAri3.chr26             17844142 0 +  44077779 C
e bosTau8.chr27             18217532 102 +  45407902 I
e panHod1.KE114653           1502015 0 -   2937107 C
e capHir1.chr27             17929612 0 +  44118849 C
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE027501              2856 0 +     16385 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55056121 830 +  59856998 I
e anoCar2.chr3             144852042 0 + 204416410 I
e pseHum1.KB221303            458855 896 -   1055857 I
e zonAlb1.KB913240            786789 751 -    852449 I
e allMis1.JH732700            227507 17 -   1095808 I
e falPer1.KB390515           2967599 0 -   4376501 I
e falChe1.KB398104           5465398 0 -   9141934 I
e macEug2.GL108065             83888 651 -    187545 T
e geoFor1.JH739942           1278603 862 +   5104860 I
e anaPla1.KB742960            138948 1155 +    531124 I
e amaVit1.KB267266             44469 1 +     45143 I
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556598           4026166 0 +  13137711 I
e taeGut2.chr4              40873165 66 +  69780378 I
e orcOrc1.KB316932           3016307 19 -  10937097 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=530088.000000
s hg38.chr8_KI270814v1_alt     70111 83 +    141812 ATGATTCAGAGTCTCAGGCCATAGCAGTATAAGTATCAAAACATCTATTCCCAACTTGGAGTTGAGATTTC-TAATACGAATTC------
s ponAbe2.chr8              59039950 83 + 153482349 ATGATTCAGAGTCTCAGGCCATAGCAGTACGAGTATCAAAACATCTATTCTCAACTTGGAGTTGAGATTTC-TAATACGAATTC------
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48113369 83 + 100215132 ATGATTCAGAGTTTCAGGCCATAGCAGTACGAGTATCAAAACATCTATTCTCAACTTGGAGTTGAGATTTC-TAATACGAATTC------
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190753924 83 - 190850796 ATGATTCCAAGTCTCAGGCCACAGTAGTACAAGTATCAAAACATCTATTCTCAGTTCAGAGTTAAGATTTC-TAATAAGAATTC------
i calJac3.chr3             I 4 C 0
s saiBol1.JH378165          14117503 83 -  14256875 ATGACTCCAAGTCTCAGGCCACAGTAGTACAAGTATCAAAACATCTATTCTCAGTTCAGAGTTAAGATTTC-TAGTAAGAATTC------
i saiBol1.JH378165         I 4 C 0
s orcOrc1.KB316932           3016326 83 -  10937097 ATGGCTCCAAGTATCAGACCACAGCAGGACAAGTATCAAAATATCTATTTTCAATATGGAGCTGAGAATGC-TAATAAGAATTC------
i orcOrc1.KB316932         I 19 C 0
s panHod1.KE114653           1502015 83 -   2937107 ATGGTGCCAAGTCTCAGACCACAGCAGGACAAGTATCGAAACATCTGTTCTCAACTTGGAGCTGAAAATGC-TAGTAAGAATTC------
i panHod1.KE114653         C 0 C 0
s bosTau8.chr27             18217634 83 +  45407902 ATGGTGCCAAGTCTCAGACCGCAGCAGGACAAGTATCAAAACATCTATTCTCAACTTGGAGCTGAAAATTC-TAGTAAGAATTT------
i bosTau8.chr27            I 102 C 0
s oviAri3.chr26             17844142 83 +  44077779 ATGGTGCCAAGTCTCAGACCACAGCAGGACAAGTATCAAAACATCTGTTCTCAACTTGGAGCTGAAAATAC-TAGTAAGAATTC------
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17929612 83 +  44118849 ATGGTGCCAAGTCTCAGACCACAGCAGGACAAGTATCAAAACATCTGTTCTCAACTTGGAGCTGAAAATAC-TAGTAAGAATTC------
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18744222 83 -  39960074 ATGATCCCAAGTCTCAAGCCACAGCAGGACAAGTATCAAAATATCTGTTCTCAACTTGGAGCTGAGAATCC-TAGTAAGAATTC------
i equCab2.chr27            I 4 I 366
s canFam3.chr16             18191741 83 -  59632846 ATAATTCCAAGGCTCTGGTCACAGCAGGACATGTATCAAAATACTGATTCTCAACTTGGGGCTGAGAATTC-TAATAAGAATTC------
i canFam3.chr16            I 4 C 0
s odoRosDiv1.KB229312         749276 83 -   2017862 ATGATTCCAAGGCTCAGGCCACAGCAGGACATGTATCAAAATACTGATTCTCAACTTGGAGCTGAGAATTC-TAATAAGAATTC------
i odoRosDiv1.KB229312      I 21 C 0
s monDom5.chr5             230633764 81 - 304825324 ATGCCTCCCAATCTCAGTCCTCTGCAGGAAAAG--TCAAAATATCTCCTCTAATCTTTTAGTTGCCATTTC-TAAAATAAATTC------
i monDom5.chr5             C 0 C 0
s colLiv1.KB375368            172279 86 +  19163802 ATGATTCGCTTTGTTAACCCACAGCTAGAAAAGCATCTAAACATGTAATTTCAAATCACA---GAAGCTGC-TCTTCCAGAGTAGGCAAG
i colLiv1.KB375368         C 0 C 0
s taeGut2.chr4              40873231 83 +  69780378 ATGATTCACCAGAGTAATCCACAGCTATAAAAGTATCTAAACATG---TTTCAAATCATA---AAAGCTGC-TCTTACAGAGCAGGAAAG
i taeGut2.chr4             I 66 C 0
s galGal4.chr4              62357921 90 +  90216835 ATGATTCACCTTTCTAACCCAGAGCTGGAAAAGTACCTGAACATGCTGTTTGAAATCACAGATGAAACTGCTTTTTACAGGgaaggaaag
i galGal4.chr4             C 0 C 0
s melGal1.chr4              45134076 89 +  74864452 ATGATTCACCCTTTTAATCCACAGCTGGAAAAGTACCTGAACACGTTGTTTGAAATCACTGATGAAACTGC-TCTTACAGAGAAGGAAAG
i melGal1.chr4             C 0 C 0
s allMis1.JH732700            227524 86 -   1095808 ATGATTCATAATCCCAATCCACAGCAGGAGTAGTGTCAAAATATGTTCTTTCAAGTTGCA---AGAGCAGT-TCTTAATGAGGTGAAAAG
i allMis1.JH732700         I 17 C 0
e felCat8.chrB1             20474662 206 + 206538554 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE027501              2856  0 +     16385 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55056121 830 +  59856998 I
e anoCar2.chr3             144852042  0 + 204416410 I
e pseHum1.KB221303            458855 896 -   1055857 I
e zonAlb1.KB913240            786789 751 -    852449 I
e falPer1.KB390515           2967599  0 -   4376501 I
e falChe1.KB398104           5465398  0 -   9141934 I
e macEug2.GL108065             83888 651 -    187545 T
e geoFor1.JH739942           1278603 862 +   5104860 I
e anaPla1.KB742960            138948 1155 +    531124 I
e amaVit1.KB267266             44469  1 +     45143 I
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556598           4026166  0 +  13137711 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=76680.000000
s hg38.chr8_KI270814v1_alt     70194 14 +    141812 TA-TTTTCTCCATAA
s ponAbe2.chr8              59040033 14 + 153482349 TA-TTTTCTCCATAA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48113452 14 + 100215132 TA-TTTTCTCCATAA
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190754007 14 - 190850796 TA-TTTTCTCCATAA
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14117586 14 -  14256875 TA-TTTTCTCCATAA
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3016409 14 -  10937097 TA-TTTTCTCCATAA
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1502098 14 -   2937107 TA-TTTTCTCCATAA
i panHod1.KE114653         C 0 C 0
s bosTau8.chr27             18217717 14 +  45407902 TA-TTTTCTCCATAA
i bosTau8.chr27            C 0 I 826
s oviAri3.chr26             17844225 14 +  44077779 TA-TTTTCTCCATAA
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17929695 14 +  44118849 TA-TTTTCTCCATAA
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18744671 14 -  39960074 ta-gcagctcaaatg
i equCab2.chr27            I 366 C 0
s canFam3.chr16             18191824 14 -  59632846 TA-TTTGCTCCATAA
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         749359 14 -   2017862 TA-TTTTCTCCATAA
i odoRosDiv1.KB229312      C 0 C 0
s monDom5.chr5             230633845 11 - 304825324 ----CTTTTCATTGA
i monDom5.chr5             C 0 I 2
s colLiv1.KB375368            172365 15 +  19163802 TGTTTTTTAACCTAA
i colLiv1.KB375368         C 0 C 0
s taeGut2.chr4              40873314 14 +  69780378 TA-TTTTTAACTGAG
i taeGut2.chr4             C 0 C 0
s galGal4.chr4              62358011 14 +  90216835 ta-tttttaatttaa
i galGal4.chr4             C 0 C 0
s melGal1.chr4              45134165 11 +  74864452 TA-TTTTTA---TCA
i melGal1.chr4             C 0 C 0
s allMis1.JH732700            227610 13 -   1095808 CA-TTTTCT-CTGGA
i allMis1.JH732700         C 0 C 0
e felCat8.chrB1             20474662 206 + 206538554 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE027501              2856  0 +     16385 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55056121 830 +  59856998 I
e anoCar2.chr3             144852042  0 + 204416410 I
e pseHum1.KB221303            458855 896 -   1055857 I
e zonAlb1.KB913240            786789 751 -    852449 I
e falPer1.KB390515           2967599  0 -   4376501 I
e falChe1.KB398104           5465398  0 -   9141934 I
e macEug2.GL108065             83888 651 -    187545 T
e geoFor1.JH739942           1278603 862 +   5104860 I
e anaPla1.KB742960            138948 1155 +    531124 I
e amaVit1.KB267266             44469  1 +     45143 I
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556598           4026166  0 +  13137711 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=3451.000000
s hg38.chr8_KI270814v1_alt     70208 4 +    141812 TCAT
s ponAbe2.chr8              59040047 4 + 153482349 TCAT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48113466 4 + 100215132 TCGT
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190754021 4 - 190850796 TCAT
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14117600 4 -  14256875 TCAT
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3016423 4 -  10937097 GTAT
i orcOrc1.KB316932         C 0 I 349
s panHod1.KE114653           1502112 4 -   2937107 GTAT
i panHod1.KE114653         C 0 I 831
s oviAri3.chr26             17844239 4 +  44077779 GTAT
i oviAri3.chr26            C 0 I 831
s capHir1.chr27             17929709 4 +  44118849 GTAT
i capHir1.chr27            C 0 I 830
s equCab2.chr27             18744685 4 -  39960074 gatt
i equCab2.chr27            C 0 C 0
s canFam3.chr16             18191838 4 -  59632846 TCAT
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         749373 4 -   2017862 TCAT
i odoRosDiv1.KB229312      C 0 C 0
s monDom5.chr5             230633858 4 - 304825324 TCAC
i monDom5.chr5             I 2 C 0
s colLiv1.KB375368            172380 4 +  19163802 TCaa
i colLiv1.KB375368         C 0 C 0
s taeGut2.chr4              40873328 4 +  69780378 TCAA
i taeGut2.chr4             C 0 C 0
s galGal4.chr4              62358025 4 +  90216835 tcaa
i galGal4.chr4             C 0 C 0
s melGal1.chr4              45134176 4 +  74864452 CAGA
i melGal1.chr4             C 0 C 0
s allMis1.JH732700            227623 4 -   1095808 ATAA
i allMis1.JH732700         C 0 C 0
e felCat8.chrB1             20474662 206 + 206538554 I
e bosTau8.chr27             18217731 826 +  45407902 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE027501              2856 0 +     16385 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55056121 830 +  59856998 I
e anoCar2.chr3             144852042 0 + 204416410 I
e pseHum1.KB221303            458855 896 -   1055857 I
e zonAlb1.KB913240            786789 751 -    852449 I
e falPer1.KB390515           2967599 0 -   4376501 I
e falChe1.KB398104           5465398 0 -   9141934 I
e macEug2.GL108065             83888 651 -    187545 T
e geoFor1.JH739942           1278603 862 +   5104860 I
e anaPla1.KB742960            138948 1155 +    531124 I
e amaVit1.KB267266             44469 1 +     45143 I
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556598           4026166 0 +  13137711 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=3482.000000
s hg38.chr8_KI270814v1_alt     70212 10 +    141812 AAAATAGCAT---
s ponAbe2.chr8              59040051 10 + 153482349 AAAATAGCAT---
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48113470 10 + 100215132 AAAATAGCAT---
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190754025 10 - 190850796 AAAATAGGAT---
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14117604 10 -  14256875 AAAATAGTAT---
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3016776 10 -  10937097 aaacaAGCAT---
i orcOrc1.KB316932         I 349 C 0
s panHod1.KE114653           1502947 10 -   2937107 AGACTAGTAT---
i panHod1.KE114653         I 831 C 0
s bosTau8.chr27             18218557 10 +  45407902 AGACTAGTAT---
i bosTau8.chr27            I 826 C 0
s oviAri3.chr26             17845074 10 +  44077779 AGACTAGTAT---
i oviAri3.chr26            I 831 C 0
s capHir1.chr27             17930543 10 +  44118849 AGACTAGTAT---
i capHir1.chr27            I 830 C 0
s equCab2.chr27             18744689 10 -  39960074 aagTAAGTAT---
i equCab2.chr27            C 0 C 0
s canFam3.chr16             18191842 10 -  59632846 AAAATAGTAT---
i canFam3.chr16            C 0 I 371
s odoRosDiv1.KB229312         749377 10 -   2017862 AAAATAGTAT---
i odoRosDiv1.KB229312      C 0 I 350
s monDom5.chr5             230633862  9 - 304825324 -TAATCATAC---
i monDom5.chr5             C 0 C 0
s colLiv1.KB375368            172384 10 +  19163802 ---ttagcagcag
i colLiv1.KB375368         C 0 C 0
s taeGut2.chr4              40873332 10 +  69780378 ---TTAGCAGCAG
i taeGut2.chr4             C 0 C 0
s galGal4.chr4              62358029 10 +  90216835 ---tTAGCAACAT
i galGal4.chr4             C 0 C 0
s melGal1.chr4              45134180  6 +  74864452 ---T--GAAAC--
i melGal1.chr4             C 0 C 0
s allMis1.JH732700            227627 10 -   1095808 ---TTAGCAATAG
i allMis1.JH732700         C 0 C 0
e felCat8.chrB1             20474662 206 + 206538554 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE027501              2856  0 +     16385 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55056121 830 +  59856998 I
e anoCar2.chr3             144852042  0 + 204416410 I
e pseHum1.KB221303            458855 896 -   1055857 I
e zonAlb1.KB913240            786789 751 -    852449 I
e falPer1.KB390515           2967599  0 -   4376501 I
e falChe1.KB398104           5465398  0 -   9141934 I
e macEug2.GL108065             83888 651 -    187545 T
e geoFor1.JH739942           1278603 862 +   5104860 I
e anaPla1.KB742960            138948 1155 +    531124 I
e amaVit1.KB267266             44469  1 +     45143 I
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556598           4026166  0 +  13137711 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=113637.000000
s hg38.chr8_KI270814v1_alt     70222 38 +    141812 CAGGAAAAGTCTCTTGACATCTTAAAATACATATCACT
s ponAbe2.chr8              59040061 38 + 153482349 CAGGAAAAGTCTCTTGACATCTTAAAATACATATCACT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48113480 38 + 100215132 CAGGAAAAGTCTCTTGACACCTTAAAATACATATAACT
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190754035 33 - 190850796 -AAGAAAAGTC----AATATCTTAAAATAGAGATCATT
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14117614 34 -  14256875 CAAGAAAAGTC----AATATCTTAAAATACAGATCGTT
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3016786 38 -  10937097 GAAGAAAACTATCTTGACATCTTAAAATACAGATCATT
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1502957 38 -   2937107 CAAGAAAAATATCTCAACATCTTAAAATATAGATCATT
i panHod1.KE114653         C 0 C 0
s bosTau8.chr27             18218567 38 +  45407902 CAAGAAAAATATCTCAACATCTTAAAATATAGATCATT
i bosTau8.chr27            C 0 C 0
s oviAri3.chr26             17845084 37 +  44077779 CAAGAAAAATATCTCAACATCTTAAAA-ATAGATCATT
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17930553 38 +  44118849 CAAGAAAAATATCTCAACATCTTGAAATATAGATCATT
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18744699 38 -  39960074 CAAGAATAATCTCTTGACATCTTAAAATACAAATCATT
i equCab2.chr27            C 0 C 0
s canFam3.chr16             18192223 38 -  59632846 CAAGAAAAATGTTTTGACAAATTAAAATATAGATCTTT
i canFam3.chr16            I 371 C 0
s odoRosDiv1.KB229312         749737 38 -   2017862 CAAGAAAAATGTTTTGACCTCTCAAAATATAGATCTTT
i odoRosDiv1.KB229312      I 350 C 0
s monDom5.chr5             230633871 38 - 304825324 CAGAAAATATGACTTGACCTTTGAAAATATGGATAATT
i monDom5.chr5             C 0 C 0
s colLiv1.KB375368            172394 29 +  19163802 cagca--------gcaacaactc-AGGGTCCTATAATT
i colLiv1.KB375368         C 0 I 2
s taeGut2.chr4              40873342 23 +  69780378 CAG--------------CAATTC-AGGTTCCTATAACT
i taeGut2.chr4             C 0 n 0
s galGal4.chr4              62358039 23 +  90216835 CAG--------------CATTCC-AGGTTcctaaattg
i galGal4.chr4             C 0 I 37
s melGal1.chr4              45134186 13 +  74864452 -------------------------TGCTCTTACAGAG
i melGal1.chr4             C 0 I 22
s allMis1.JH732700            227637 37 -   1095808 CAAGAATTGTAATATCACCTTTT-GAATGCAAACAACT
i allMis1.JH732700         C 0 C 0
e felCat8.chrB1             20474662 206 + 206538554 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE027501              2856  0 +     16385 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55056121 830 +  59856998 I
e anoCar2.chr3             144852042  0 + 204416410 I
e pseHum1.KB221303            458855 896 -   1055857 I
e zonAlb1.KB913240            786789 751 -    852449 I
e falPer1.KB390515           2967599  0 -   4376501 I
e falChe1.KB398104           5465398  0 -   9141934 I
e macEug2.GL108065             83888 651 -    187545 T
e geoFor1.JH739942           1278603 862 +   5104860 I
e anaPla1.KB742960            138948 1155 +    531124 I
e amaVit1.KB267266             44469  1 +     45143 I
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556598           4026166  0 +  13137711 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=83274.000000
s hg38.chr8_KI270814v1_alt     70260 17 +    141812 G----------GAAAGTAGATCTTTTT
s ponAbe2.chr8              59040099 17 + 153482349 G----------GAAAGTAGATCTTTTT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48113518 17 + 100215132 G----------GAAAGTAGATCTTTTT
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190754068 17 - 190850796 G----------AAAAGTAGATCTTTCT
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14117648 17 -  14256875 G----------AAAAGTAGATCTTTCT
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3016824 17 -  10937097 G----------GAAAGTAAATCCCTCT
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1502995 17 -   2937107 G----------AAAAGCAACTCCTTCC
i panHod1.KE114653         C 0 C 0
s bosTau8.chr27             18218605 17 +  45407902 G----------AAAAGCAACTCCTTCT
i bosTau8.chr27            C 0 C 0
s oviAri3.chr26             17845121 17 +  44077779 G----------AAAAGCAACTCCTTCT
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17930591 17 +  44118849 G----------AAAAGCAACTCCTTCT
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18744737 17 -  39960074 G----------GAAAATAGATCCTTCT
i equCab2.chr27            C 0 C 0
s canFam3.chr16             18192261 17 -  59632846 G----------GAAAGCAAATCCTTCT
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         749775 17 -   2017862 G----------GAAAGTAAATCCTTCT
i odoRosDiv1.KB229312      C 0 C 0
s monDom5.chr5             230633909 17 - 304825324 A----------GAAAATAGATCTCTCT
i monDom5.chr5             C 0 C 0
s colLiv1.KB375368            172425 16 +  19163802 -----------AAAAGTATGTCTCTCT
i colLiv1.KB375368         I 2 n 2
s galGal4.chr4              62358099 15 +  90216835 -----------CAGAGT-TAATGCTCa
i galGal4.chr4             I 37 I 2
s melGal1.chr4              45134221  3 +  74864452 ------------------------TCA
i melGal1.chr4             I 22 I 2
s allMis1.JH732700            227674 27 -   1095808 GGAGAAAAGACTAGAAGAGACTTTTCT
i allMis1.JH732700         C 0 C 0
e felCat8.chrB1             20474662 206 + 206538554 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE027501              2856  0 +     16385 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55056121 830 +  59856998 I
e anoCar2.chr3             144852042  0 + 204416410 I
e pseHum1.KB221303            458855 896 -   1055857 I
e zonAlb1.KB913240            786789 751 -    852449 I
e falPer1.KB390515           2967599  0 -   4376501 I
e falChe1.KB398104           5465398  0 -   9141934 I
e macEug2.GL108065             83888 651 -    187545 T
e geoFor1.JH739942           1278603 862 +   5104860 I
e anaPla1.KB742960            138948 1155 +    531124 I
e amaVit1.KB267266             44469  1 +     45143 I
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556598           4026166  0 +  13137711 I
e taeGut2.chr4              40873365  0 +  69780378 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=112931.000000
s hg38.chr8_KI270814v1_alt     70277 48 +    141812 -----------GTCCTTCAGATAAACATACT-GTAAAATTTGAAATGAAAATTATTCTTT
s ponAbe2.chr8              59040116 48 + 153482349 -----------GTCCTTCAGATAAACATATT-GTAAAATTTGAAATGAAAATTATTCTTT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48113535 48 + 100215132 -----------GTCCTTCAGATAAACAAATT-GTAAAATTTGAAATGAAAATTATTCTTC
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190754085 48 - 190850796 -----------GCCCTTAACATAAACAAACT-GCAAAATCTGGAGTTAAAGTTATTCCTT
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14117665 48 -  14256875 -----------GCCCTTAACATAAACAAACT-GTAAAATCTGGAGTTAAAATTATTCCTT
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3016841 48 -  10937097 -----------ACCCTTCACATAAACAAACT-GAAATTTTTGAAGTAAAACTTACCTCTT
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1503012 48 -   2937107 -----------ACCCTTCACACTGACAGACT-GAAATGTTTGAAGTAAAACTTAACTCTT
i panHod1.KE114653         C 0 C 0
s bosTau8.chr27             18218622 48 +  45407902 -----------ACCCTTCACACTGACAAATT-GAAATGTTTGAAGTAAAACTTAGCTCTT
i bosTau8.chr27            C 0 C 0
s oviAri3.chr26             17845138 48 +  44077779 -----------ACCCTTCACACTGACAGATT-GAAATGTTTGAAGTAAAACTTAACTCTT
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17930608 48 +  44118849 -----------ACCCTTCACACTGACAGATT-GAAATGTTTGAAGTAAAACTTAACTCTT
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18744754 48 -  39960074 -----------ACCCTTCACCTAAACAAATT-GAAATCTTTGAGGTAAAATTTATCTCTT
i equCab2.chr27            C 0 C 0
s canFam3.chr16             18192278 48 -  59632846 -----------ACCCTTCACATAAACAAATT-GAATATTTTGAAGTAAAATTTACCTCCA
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         749792 48 -   2017862 -----------ACTCTTCACATAAACAAATT-GAACATTTTGAAGTAAAATTTATCCTTG
i odoRosDiv1.KB229312      C 0 C 0
s monDom5.chr5             230633926 44 - 304825324 -----------AATTCT-ACATGAACAAATT-CTAAAAACTGAGAC--AATTtctctct-
i monDom5.chr5             C 0 n 0
s galGal4.chr4              62358116 47 +  90216835 gaaatccagaaggatctgctATGAGTTAGCT------ATGGGAAATAC----ACTAC---
i galGal4.chr4             I 2 C 0
s melGal1.chr4              45134226 44 +  74864452 ------CAGCAACATCAGCAAT---TTAGGTTCCTAGATTGGAAAAAG----TATCT---
i melGal1.chr4             I 2 C 0
s allMis1.JH732700            227701 43 -   1095808 -----------ATCTCTGCTATAACCAAATT---TAGAACTGAAGCACGTTTTCTTT---
i allMis1.JH732700         C 0 C 0
e felCat8.chrB1             20474662 206 + 206538554 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE027501              2856  0 +     16385 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55056121 830 +  59856998 I
e anoCar2.chr3             144852042  0 + 204416410 I
e pseHum1.KB221303            458855 896 -   1055857 I
e zonAlb1.KB913240            786789 751 -    852449 I
e colLiv1.KB375368            172441  2 +  19163802 I
e falPer1.KB390515           2967599  0 -   4376501 I
e falChe1.KB398104           5465398  0 -   9141934 I
e macEug2.GL108065             83888 651 -    187545 T
e geoFor1.JH739942           1278603 862 +   5104860 I
e anaPla1.KB742960            138948 1155 +    531124 I
e amaVit1.KB267266             44469  1 +     45143 I
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556598           4026166  0 +  13137711 I
e taeGut2.chr4              40873365  0 +  69780378 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=-15822.000000
s hg38.chr8_KI270814v1_alt     70325 2 +    141812 GT-
s ponAbe2.chr8              59040164 2 + 153482349 GT-
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48113583 2 + 100215132 TT-
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190754133 2 - 190850796 GT-
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14117713 2 -  14256875 GT-
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3016889 2 -  10937097 GT-
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1503060 2 -   2937107 AC-
i panHod1.KE114653         C 0 C 0
s bosTau8.chr27             18218670 2 +  45407902 AC-
i bosTau8.chr27            C 0 C 0
s oviAri3.chr26             17845186 2 +  44077779 AC-
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17930656 2 +  44118849 AC-
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18744802 2 -  39960074 GT-
i equCab2.chr27            C 0 C 0
s canFam3.chr16             18192326 2 -  59632846 GT-
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         749840 2 -   2017862 GA-
i odoRosDiv1.KB229312      C 0 C 0
s galGal4.chr4              62358163 2 +  90216835 -CT
i galGal4.chr4             C 0 C 0
s melGal1.chr4              45134270 2 +  74864452 -CC
i melGal1.chr4             C 0 C 0
s allMis1.JH732700            227744 2 -   1095808 -CC
i allMis1.JH732700         C 0 C 0
e felCat8.chrB1             20474662 206 + 206538554 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE027501              2856 0 +     16385 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55056121 830 +  59856998 I
e anoCar2.chr3             144852042 0 + 204416410 I
e pseHum1.KB221303            458855 896 -   1055857 I
e zonAlb1.KB913240            786789 751 -    852449 I
e colLiv1.KB375368            172441 2 +  19163802 I
e falPer1.KB390515           2967599 0 -   4376501 I
e falChe1.KB398104           5465398 0 -   9141934 I
e macEug2.GL108065             83888 651 -    187545 T
e geoFor1.JH739942           1278603 862 +   5104860 I
e anaPla1.KB742960            138948 1155 +    531124 I
e amaVit1.KB267266             44469 1 +     45143 I
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556598           4026166 0 +  13137711 I
e monDom5.chr5             230633970 0 - 304825324 I
e taeGut2.chr4              40873365 0 +  69780378 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=38297.000000
s hg38.chr8_KI270814v1_alt     70327 14 +    141812 ACCACCATTCTGAT
s ponAbe2.chr8              59040166 14 + 153482349 ACCACCATTCTGAT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48113585 14 + 100215132 ACCACCATTCTAAT
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190754135 14 - 190850796 AGCAGCCTCCTGCT
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14117715 14 -  14256875 ATCAGCCTCCTGCT
i saiBol1.JH378165         C 0 C 0
s panHod1.KE114653           1503062 14 -   2937107 ACCATCACCCTACC
i panHod1.KE114653         C 0 C 0
s bosTau8.chr27             18218672 14 +  45407902 ACCGTCACCCTCCC
i bosTau8.chr27            C 0 C 0
s oviAri3.chr26             17845188 14 +  44077779 ACCGTCACCCTACC
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17930658 14 +  44118849 ACCGTCACCCTACC
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18744804 14 -  39960074 GCCATCACCTTACC
i equCab2.chr27            C 0 C 0
s canFam3.chr16             18192328 14 -  59632846 ACCATCACCCTACC
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         749842 14 -   2017862 ACCTTCACTCTACC
i odoRosDiv1.KB229312      C 0 C 0
s galGal4.chr4              62358165 14 +  90216835 GTGACTATTTCAAT
i galGal4.chr4             C 0 n 0
s melGal1.chr4              45134272 14 +  74864452 TTATTCATCTTCAT
i melGal1.chr4             C 0 C 0
s allMis1.JH732700            227746 14 -   1095808 TTTTTCATCCTCAC
i allMis1.JH732700         C 0 C 0
e felCat8.chrB1             20474662 206 + 206538554 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE027501              2856  0 +     16385 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55056121 830 +  59856998 I
e anoCar2.chr3             144852042  0 + 204416410 I
e pseHum1.KB221303            458855 896 -   1055857 I
e zonAlb1.KB913240            786789 751 -    852449 I
e colLiv1.KB375368            172441  2 +  19163802 I
e falPer1.KB390515           2967599  0 -   4376501 I
e falChe1.KB398104           5465398  0 -   9141934 I
e macEug2.GL108065             83888 651 -    187545 T
e geoFor1.JH739942           1278603 862 +   5104860 I
e anaPla1.KB742960            138948 1155 +    531124 I
e amaVit1.KB267266             44469  1 +     45143 I
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556598           4026166  0 +  13137711 I
e monDom5.chr5             230633970  0 - 304825324 I
e taeGut2.chr4              40873365  0 +  69780378 I
e orcOrc1.KB316932           3016891  0 -  10937097 C
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=187171.000000
s hg38.chr8_KI270814v1_alt     70341 63 +    141812 TTTACCCAGGGTTAACACAAAAG-TTATAGCAGTACATGAAGCTCTGAGGCTTCAATGGGTGTA-----------
s ponAbe2.chr8              59040180 63 + 153482349 TTTACCCAGAGTTAACACAAAAG-TTATAGCAGTACATGAAGCTCTGAGGCTTCAATGGGTGTA-----------
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48113599 63 + 100215132 TTTACCCAGAGTTAACACAAAAG-TTATAGCAGTACATGAAGCTCTGAGGCTTCAATGGGTGTA-----------
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190754149 64 - 190850796 TTTACCCAGAGTTAACAGAAAAGTTTATAGCCTTGCATGAAGCTTTGAGGCTTTGATGGGTGTA-----------
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14117729 64 -  14256875 TTTACCCAGAGTTAACGGAAAAGTTTATAGCCTTGCATGACACTTTGAGGCTTCGATGGGTGTA-----------
i saiBol1.JH378165         C 0 C 0
s panHod1.KE114653           1503076 63 -   2937107 TTTATCCAGAGTTAAGAGAAATGTTTATAGTAGCGCTTTAAG-TTTGTGGCCTTGATAGATTTA-----------
i panHod1.KE114653         C 0 C 0
s bosTau8.chr27             18218686 63 +  45407902 TTTATCCAGAGTTAACAGAAATGTTTATAGTACTGCTTGAAG-TTTGTGGCTTTGATGGATTTA-----------
i bosTau8.chr27            C 0 C 0
s oviAri3.chr26             17845202 63 +  44077779 TTTATCCAGAGTTAACAGGAATGTTTACAGTAGTGCTTAAAG-TCTGCGGCCTTGATAGATTTA-----------
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17930672 63 +  44118849 TTTATCCAGAGTTAACAGAAATGTTTACAGTAGTGCTTAAAG-TCTGTGGCCTTGATAGATTTA-----------
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18744818 63 -  39960074 TTTATCTAGAGTTAACAGAAAAG-TTGTAGCAGTGCATGAAGCTTTACAGCTTTGAGGAGTTTA-----------
i equCab2.chr27            C 0 C 0
s canFam3.chr16             18192342 63 -  59632846 TTTATTCAGAGTTGACAGAAAAG-TTGTAGTGTTACATGAAGCTTTGTGGCTATGATGGGTTTA-----------
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         749856 54 -   2017862 TTTATCCAGAGTTGACAGAA----------TGGTGCATGAAGTTTTGTGGCTTTGACAGGTTTA-----------
i odoRosDiv1.KB229312      C 0 C 0
s melGal1.chr4              45134286 63 +  74864452 TTCAAACAGAGTTAATACCCA---GTGA---AATCCAAAAGAATCTG------CTATGAGTTTGCTACGGGGATA
i melGal1.chr4             C 0 n 0
s allMis1.JH732700            227760 48 -   1095808 CTTACACTGAGCTAATACAAATG-GTGAATGAACCCAAAAAA----------------------CTTCAAA----
i allMis1.JH732700         C 0 C 0
e felCat8.chrB1             20474662 206 + 206538554 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE027501              2856  0 +     16385 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55056121 830 +  59856998 I
e anoCar2.chr3             144852042  0 + 204416410 I
e pseHum1.KB221303            458855 896 -   1055857 I
e zonAlb1.KB913240            786789 751 -    852449 I
e colLiv1.KB375368            172441  2 +  19163802 I
e falPer1.KB390515           2967599  0 -   4376501 I
e falChe1.KB398104           5465398  0 -   9141934 I
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr4              62358179  0 +  90216835 I
e geoFor1.JH739942           1278603 862 +   5104860 I
e anaPla1.KB742960            138948 1155 +    531124 I
e amaVit1.KB267266             44469  1 +     45143 I
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556598           4026166  0 +  13137711 I
e monDom5.chr5             230633970  0 - 304825324 I
e taeGut2.chr4              40873365  0 +  69780378 I
e orcOrc1.KB316932           3016891  0 -  10937097 C
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=65604.000000
s hg38.chr8_KI270814v1_alt     70404 17 +    141812 GATATAGACATCCAAAC
s ponAbe2.chr8              59040243 17 + 153482349 GATATAGACATCCAAAC
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48113662 17 + 100215132 GATACAGACATCCAAAC
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190754213 17 - 190850796 GATATAGATATCTAAAC
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14117793 17 -  14256875 GATATAGGTATCTAAAC
i saiBol1.JH378165         C 0 C 0
s panHod1.KE114653           1503139 17 -   2937107 GTTATTGACATCTACAC
i panHod1.KE114653         C 0 C 0
s bosTau8.chr27             18218749 17 +  45407902 GTTATTGACATCTATAC
i bosTau8.chr27            C 0 I 205
s oviAri3.chr26             17845265 17 +  44077779 GTTATTGACATCTACAC
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17930735 17 +  44118849 GTTATTGACATCTACAC
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18744881 17 -  39960074 GATATAGATATCTTAAT
i equCab2.chr27            C 0 C 0
s canFam3.chr16             18192405 17 -  59632846 GATACAGACATCTAAAC
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         749910 17 -   2017862 GATACAAACATCTAAAC
i odoRosDiv1.KB229312      C 0 C 0
s allMis1.JH732700            227808 10 -   1095808 AATATGGATA-------
i allMis1.JH732700         C 0 C 0
e felCat8.chrB1             20474662 206 + 206538554 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE027501              2856  0 +     16385 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55056121 830 +  59856998 I
e anoCar2.chr3             144852042  0 + 204416410 I
e pseHum1.KB221303            458855 896 -   1055857 I
e zonAlb1.KB913240            786789 751 -    852449 I
e colLiv1.KB375368            172441  2 +  19163802 I
e falPer1.KB390515           2967599  0 -   4376501 I
e falChe1.KB398104           5465398  0 -   9141934 I
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr4              62358179  0 +  90216835 I
e geoFor1.JH739942           1278603 862 +   5104860 I
e melGal1.chr4              45134349  0 +  74864452 I
e anaPla1.KB742960            138948 1155 +    531124 I
e amaVit1.KB267266             44469  1 +     45143 I
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556598           4026166  0 +  13137711 I
e monDom5.chr5             230633970  0 - 304825324 I
e taeGut2.chr4              40873365  0 +  69780378 I
e orcOrc1.KB316932           3016891  0 -  10937097 C
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=45635.000000
s hg38.chr8_KI270814v1_alt     70421 14 +    141812 CTATAATTTTACAT
s ponAbe2.chr8              59040260 14 + 153482349 CTATAATTTTACAT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48113679 14 + 100215132 CTATAATTTTACAT
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190754230 14 - 190850796 CTATCATTTCACAC
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14117810 14 -  14256875 CTATCACTTCACAC
i saiBol1.JH378165         C 0 C 0
s panHod1.KE114653           1503156 14 -   2937107 TTATTGTTTCACAC
i panHod1.KE114653         C 0 C 0
s oviAri3.chr26             17845282 14 +  44077779 TTATTGTTCCACAC
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17930752 14 +  44118849 TTATTGTTCCATAC
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18744898 14 -  39960074 CTGTTGTTTCACAC
i equCab2.chr27            C 0 C 0
s canFam3.chr16             18192422 14 -  59632846 CTATTGTTTCACAC
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         749927 14 -   2017862 CCATTGTTTCACGC
i odoRosDiv1.KB229312      C 0 C 0
s allMis1.JH732700            227818 10 -   1095808 ----AATTTTCCAT
i allMis1.JH732700         C 0 n 0
e felCat8.chrB1             20474662 206 + 206538554 I
e bosTau8.chr27             18218766 205 +  45407902 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE027501              2856  0 +     16385 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55056121 830 +  59856998 I
e anoCar2.chr3             144852042  0 + 204416410 I
e pseHum1.KB221303            458855 896 -   1055857 I
e zonAlb1.KB913240            786789 751 -    852449 I
e colLiv1.KB375368            172441  2 +  19163802 I
e falPer1.KB390515           2967599  0 -   4376501 I
e falChe1.KB398104           5465398  0 -   9141934 I
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr4              62358179  0 +  90216835 I
e geoFor1.JH739942           1278603 862 +   5104860 I
e melGal1.chr4              45134349  0 +  74864452 I
e anaPla1.KB742960            138948 1155 +    531124 I
e amaVit1.KB267266             44469  1 +     45143 I
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556598           4026166  0 +  13137711 I
e monDom5.chr5             230633970  0 - 304825324 I
e taeGut2.chr4              40873365  0 +  69780378 I
e orcOrc1.KB316932           3016891  0 -  10937097 C
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=408694.000000
s hg38.chr8_KI270814v1_alt     70435 154 +    141812 TAATCAGAATACTATTCATATAAATCACAAATGGCAAAACCATTTCTGAAGGTATTTGGTTTT---ATAGATTATAAAATTAAACTTCCTTATAATTGTGTCCAAACT----GAAATATGCTTCCTGTAC--------------------AAAAAAG-CTTTCTTCTAACAGTAAAGGCCTC
s ponAbe2.chr8              59040274 154 + 153482349 TAACCAGAATACCATTCATATAAATCACAAATGGAAAAACCATTTCTGAAGGTATTTGGTTTT---ATAGATTATAAAATTAAACTTCCTTATAATTGTATCCAAACT----AAAATATGCTTCCTGTAC--------------------AAAAAAG-CTTTCTTCTAAGAGTAAAGGCCTC
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48113693 154 + 100215132 TAATCAGAATACCATTCATATAAATCACAAATGGAAAAACCATTGCTGAAGGTATTTGGTTTT---ATAGATTATAAAATTAAGCTTCCTTATAATTGTATCCAAACT----GAAATATGCTTCCTGTAC--------------------AAAGAAG-CTTTCTTCTAAGAGTAAAGGCCTC
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190754244 153 - 190850796 TAGTCAGAATACCAGTCCTAGAAATCCCACATGGAAAAACCATTCCTGAAGGTATCTGGCCTT---ATGGATTATAAAATTAACCTTTCCTATCATTGTACCTAAACC----AAAGTATGCTTCCTATA---------------------AAAGAAG-GTTTCTTTCAAGAGTTAAGGCCTC
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14117824 152 -  14256875 TAGTCAGAATACCAGTCATAGAAATCCCACATGG-AAAACCATTGCTGAAGGTATCTGGCCTT---ATGGATTATAAAATTAAACTTTCTTATCATTGTACCTAAATC----AAAGTATGCTTCCTATA---------------------AAAGAAG-GTTTCTTTCAAGAGTTAAGGCCTC
i saiBol1.JH378165         C 0 C 0
s panHod1.KE114653           1503170 138 -   2937107 --------ATATCAACCATAGAAATCTCATATGGAAAAACCATTTCTGAAGGTATATG--------CTAGATTTCAAATTCCAACTTTCTTATCATTGTTCTCAAACTAGG-AAGCTATACTTCCCACAC--------------------AAAG----TTTTTTTCTAAGAGCAAATGC---
i panHod1.KE114653         C 0 C 0
s oviAri3.chr26             17845296 138 +  44077779 --------ATATCAACCAGAGAAATCTCATATGGAAAAACCATTTCTGAAGGTATATG--------CTAGATTTCAAATTCCAACTTTCTTATCATTGTTCTCAAACTAGG-AAGCTATACTTCCCACAC--------------------AAAG----TTTTTTTCTAAGAGCAAATAC---
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17930766 142 +  44118849 --------ATATCAACCAGAGAAATCTCATATGGAAAAACCATTTCTGAAGGTATATG--------CTAGATTTCAAATTCCAACTTTCTTATCATTGTTCTCAAACTAGG-AAGCTATACTTCCCACAC--------------------AAAGAAGTTTTTTTTCTAAGAGCAAATAC---
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18744912 161 -  39960074 TAATCAGAGAACCAGCCATAGCAGTCTCACATGCAAAGACCATTTCTGAGGGTATCTGGTCTTCCTCTAGATTGCAAATTCCGACTTTCTTATCCCTGTGCCCAAACTAGGAAAGCTACACCTCCCTCAC--------------------AAAGAAG-TTTTCTTCTAAGAGTAAAGGCCTC
i equCab2.chr27            C 0 I 63
s canFam3.chr16             18192436 176 -  59632846 TAATCAAAATATCAACCATAGAAGTCTCAAATGGGAAGGCCATTTCTGAAGATATCTGG---TCTTCTGGATTGCAAATTTCAACTTTCTTATCACTGTGCCCAAACTAGGAAAGCTATACTTCCCATACAAGTTATGTTTCTTTTGAGTAAAGATG-TTTTCTTTT--GAGTAAAGACCTC
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         749941 159 -   2017862 TAATCAGAATACCAGACATAGAAATCTCAAACGGGAAGACCATTTCTGAAGATATCTGGTCTTCTTCTGGATTGCAAATTTCAACTTTCTCATCACTGTGCCCAAGCTAGGAAAGCTATACTTCTCACAC--------------------AAAGATG-TTTTCTTCT--GAATAATGACCTC
i odoRosDiv1.KB229312      C 0 C 0
e felCat8.chrB1             20474662 206 + 206538554 I
e bosTau8.chr27             18218766 205 +  45407902 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE027501              2856   0 +     16385 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55056121 830 +  59856998 I
e anoCar2.chr3             144852042   0 + 204416410 I
e pseHum1.KB221303            458855 896 -   1055857 I
e zonAlb1.KB913240            786789 751 -    852449 I
e colLiv1.KB375368            172441   2 +  19163802 I
e allMis1.JH732700            227828   0 -   1095808 I
e falPer1.KB390515           2967599   0 -   4376501 I
e falChe1.KB398104           5465398   0 -   9141934 I
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr4              62358179   0 +  90216835 I
e geoFor1.JH739942           1278603 862 +   5104860 I
e melGal1.chr4              45134349   0 +  74864452 I
e anaPla1.KB742960            138948 1155 +    531124 I
e amaVit1.KB267266             44469   1 +     45143 I
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556598           4026166   0 +  13137711 I
e monDom5.chr5             230633970   0 - 304825324 I
e taeGut2.chr4              40873365   0 +  69780378 I
e orcOrc1.KB316932           3016891   0 -  10937097 C
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=7314.000000
s hg38.chr8_KI270814v1_alt     70589 23 +    141812 CTCCCAAC-C--CACCCGacacatac--
s ponAbe2.chr8              59040428 21 + 153482349 CTCCCAAC-C--CACCCGacacat----
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48113847 21 + 100215132 CTCCCAAC-C--CACCCGacacac----
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190754397 22 - 190850796 CTCCCACCAT--CCCCCTTcacac----
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14117976 22 -  14256875 CTCCCACCAT--CCCTCTTcacac----
i saiBol1.JH378165         C 0 C 0
s panHod1.KE114653           1503308 23 -   2937107 CTCACAGC-T--CCCCCAACACCT--GC
i panHod1.KE114653         C 0 I 46
s oviAri3.chr26             17845434 23 +  44077779 CTCACAGC-T--CCCCCAACACCT--GC
i oviAri3.chr26            C 0 I 46
s capHir1.chr27             17930908 23 +  44118849 CTCACAGC-T--CCCCCAACACCT--GC
i capHir1.chr27            C 0 I 46
s canFam3.chr16             18192612 20 -  59632846 ---ACTGC-TACCCTCCAaaaaca----
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         750100 20 -   2017862 ---ACTGC-TACCCTCCAaaaaca----
i odoRosDiv1.KB229312      C 0 C 0
e felCat8.chrB1             20474662 206 + 206538554 I
e bosTau8.chr27             18218766 205 +  45407902 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE027501              2856  0 +     16385 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55056121 830 +  59856998 I
e anoCar2.chr3             144852042  0 + 204416410 I
e pseHum1.KB221303            458855 896 -   1055857 I
e zonAlb1.KB913240            786789 751 -    852449 I
e colLiv1.KB375368            172441  2 +  19163802 I
e allMis1.JH732700            227828  0 -   1095808 I
e falPer1.KB390515           2967599  0 -   4376501 I
e falChe1.KB398104           5465398  0 -   9141934 I
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr4              62358179  0 +  90216835 I
e geoFor1.JH739942           1278603 862 +   5104860 I
e melGal1.chr4              45134349  0 +  74864452 I
e anaPla1.KB742960            138948 1155 +    531124 I
e amaVit1.KB267266             44469  1 +     45143 I
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556598           4026166  0 +  13137711 I
e monDom5.chr5             230633970  0 - 304825324 I
e taeGut2.chr4              40873365  0 +  69780378 I
e equCab2.chr27             18745073 63 -  39960074 I
e orcOrc1.KB316932           3016891  0 -  10937097 C
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=30377.000000
s hg38.chr8_KI270814v1_alt     70612 61 +    141812 acacacacacacacacacacacacacacacacacacacacGAAGAGAGAGAGAGA----------------------------ATTTAG
s ponAbe2.chr8              59040449 57 + 153482349 ----acacacacacacacacacacacacacacacacacacGAAGAGAGAGAGAGA----------------------------ATTTAG
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48113868 59 + 100215132 --acacacatacacacacacacacacacacacacagagagagagagagagagaga----------------------------ATTTAG
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190754419 71 - 190850796 --acacacacacacacacacacacacacacacacacacaGTgagacagagagagagagagagggagaCATACA----------------
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14117998 87 -  14256875 --acacacacacacacacacacacacacacacagagagagagagagagagagagagagagagagagagagagagagagagagaATTGAG
i saiBol1.JH378165         C 0 C 0
s canFam3.chr16             18192632 58 -  59632846 --aaacaaaataaaacaaaacaaaaca-acaacaacaaaaaaaaaaaaacagaaA----------------------------ATTGAC
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         750120 46 -   2017862 --aaacaaaacaaaacaaatgaaaac-------------aaaaAACCAACAGAAA----------------------------ATTGAG
i odoRosDiv1.KB229312      C 0 C 0
e felCat8.chrB1             20474662 206 + 206538554 I
e oviAri3.chr26             17845457 46 +  44077779 I
e bosTau8.chr27             18218766 205 +  45407902 I
e panHod1.KE114653           1503331 46 -   2937107 I
e capHir1.chr27             17930931 46 +  44118849 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE027501              2856  0 +     16385 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55056121 830 +  59856998 I
e anoCar2.chr3             144852042  0 + 204416410 I
e pseHum1.KB221303            458855 896 -   1055857 I
e zonAlb1.KB913240            786789 751 -    852449 I
e colLiv1.KB375368            172441  2 +  19163802 I
e allMis1.JH732700            227828  0 -   1095808 I
e falPer1.KB390515           2967599  0 -   4376501 I
e falChe1.KB398104           5465398  0 -   9141934 I
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr4              62358179  0 +  90216835 I
e geoFor1.JH739942           1278603 862 +   5104860 I
e melGal1.chr4              45134349  0 +  74864452 I
e anaPla1.KB742960            138948 1155 +    531124 I
e amaVit1.KB267266             44469  1 +     45143 I
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556598           4026166  0 +  13137711 I
e monDom5.chr5             230633970  0 - 304825324 I
e taeGut2.chr4              40873365  0 +  69780378 I
e equCab2.chr27             18745073 63 -  39960074 I
e orcOrc1.KB316932           3016891  0 -  10937097 C
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=15157.000000
s hg38.chr8_KI270814v1_alt     70673 19 +    141812 AGCACTGA-TCTTTTCTCTC
s ponAbe2.chr8              59040506 19 + 153482349 AGCACTGA-TCTTTTCTCTC
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48113927 19 + 100215132 AGCACTGA-TCTTTTCTCTC
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190754490 18 - 190850796 --CAATGTCCTTTTTTTCCC
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14118085 20 -  14256875 AGCATTAGTTCTTTTCTCCC
i saiBol1.JH378165         C 0 C 0
s canFam3.chr16             18192690 19 -  59632846 AGCATTGCTCCCTTCCTCC-
i canFam3.chr16            C 0 I 2
s odoRosDiv1.KB229312         750166 19 -   2017862 AGCATTGCTCCCTTCCTCT-
i odoRosDiv1.KB229312      C 0 I 2
s taeGut2.chrZ              13215804 19 +  72861351 AACACCAA-CCTCCTCTCTC
i taeGut2.chrZ             I 90 C 0
e felCat8.chrB1             20474662 206 + 206538554 I
e oviAri3.chr26             17845457 46 +  44077779 I
e bosTau8.chr27             18218766 205 +  45407902 I
e panHod1.KE114653           1503331 46 -   2937107 I
e capHir1.chr27             17930931 46 +  44118849 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE027501              2856  0 +     16385 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55056121 830 +  59856998 I
e anoCar2.chr3             144852042  0 + 204416410 I
e pseHum1.KB221303            458855 896 -   1055857 I
e zonAlb1.KB913240            786789 751 -    852449 I
e colLiv1.KB375368            172441  2 +  19163802 I
e allMis1.JH732700            227828  0 -   1095808 I
e falPer1.KB390515           2967599  0 -   4376501 I
e falChe1.KB398104           5465398  0 -   9141934 I
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr4              62358179  0 +  90216835 I
e geoFor1.JH739942           1278603 862 +   5104860 I
e melGal1.chr4              45134349  0 +  74864452 I
e anaPla1.KB742960            138948 1155 +    531124 I
e amaVit1.KB267266             44469  1 +     45143 I
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556598           4026166  0 +  13137711 I
e monDom5.chr5             230633970  0 - 304825324 I
e equCab2.chr27             18745073 63 -  39960074 I
e orcOrc1.KB316932           3016891  0 -  10937097 C
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=2629.000000
s hg38.chr8_KI270814v1_alt     70692 5 +    141812 TTAGA
s ponAbe2.chr8              59040525 5 + 153482349 TTAGA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48113946 5 + 100215132 TGAGA
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190754508 5 - 190850796 TTAGA
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14118105 5 -  14256875 TTAGA
i saiBol1.JH378165         C 0 C 0
s canFam3.chr16             18192711 5 -  59632846 TTAGA
i canFam3.chr16            I 2 C 0
s taeGut2.chrZ              13215823 1 +  72861351 C----
i taeGut2.chrZ             C 0 C 0
e odoRosDiv1.KB229312         750185 2 -   2017862 I
e felCat8.chrB1             20474662 206 + 206538554 I
e oviAri3.chr26             17845457 46 +  44077779 I
e bosTau8.chr27             18218766 205 +  45407902 I
e panHod1.KE114653           1503331 46 -   2937107 I
e capHir1.chr27             17930931 46 +  44118849 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE027501              2856 0 +     16385 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55056121 830 +  59856998 I
e anoCar2.chr3             144852042 0 + 204416410 I
e pseHum1.KB221303            458855 896 -   1055857 I
e zonAlb1.KB913240            786789 751 -    852449 I
e colLiv1.KB375368            172441 2 +  19163802 I
e allMis1.JH732700            227828 0 -   1095808 I
e falPer1.KB390515           2967599 0 -   4376501 I
e falChe1.KB398104           5465398 0 -   9141934 I
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr4              62358179 0 +  90216835 I
e geoFor1.JH739942           1278603 862 +   5104860 I
e melGal1.chr4              45134349 0 +  74864452 I
e anaPla1.KB742960            138948 1155 +    531124 I
e amaVit1.KB267266             44469 1 +     45143 I
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556598           4026166 0 +  13137711 I
e monDom5.chr5             230633970 0 - 304825324 I
e equCab2.chr27             18745073 63 -  39960074 I
e orcOrc1.KB316932           3016891 0 -  10937097 C
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=4827.000000
s hg38.chr8_KI270814v1_alt     70697 6 +    141812 CTAATT
s ponAbe2.chr8              59040530 6 + 153482349 CTAATT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48113951 6 + 100215132 CTAATT
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190754513 6 - 190850796 CTGATT
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14118110 6 -  14256875 CTGATT
i saiBol1.JH378165         C 0 C 0
e odoRosDiv1.KB229312         750185 2 -   2017862 I
e canFam3.chr16             18192716 0 -  59632846 C
e felCat8.chrB1             20474662 206 + 206538554 I
e oviAri3.chr26             17845457 46 +  44077779 I
e bosTau8.chr27             18218766 205 +  45407902 I
e panHod1.KE114653           1503331 46 -   2937107 I
e capHir1.chr27             17930931 46 +  44118849 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE027501              2856 0 +     16385 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55056121 830 +  59856998 I
e anoCar2.chr3             144852042 0 + 204416410 I
e pseHum1.KB221303            458855 896 -   1055857 I
e zonAlb1.KB913240            786789 751 -    852449 I
e colLiv1.KB375368            172441 2 +  19163802 I
e allMis1.JH732700            227828 0 -   1095808 I
e falPer1.KB390515           2967599 0 -   4376501 I
e falChe1.KB398104           5465398 0 -   9141934 I
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr4              62358179 0 +  90216835 I
e geoFor1.JH739942           1278603 862 +   5104860 I
e melGal1.chr4              45134349 0 +  74864452 I
e anaPla1.KB742960            138948 1155 +    531124 I
e amaVit1.KB267266             44469 1 +     45143 I
e apaSpi1.KB929668           5961518 314 -  12308914 T
e cheMyd1.KB478633           2433661 653 +   6037886 T
e chrPic2.chr2              18523590 672 -  68452538 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556598           4026166 0 +  13137711 I
e monDom5.chr5             230633970 0 - 304825324 I
e taeGut2.chrZ              13215824 0 +  72861351 C
e equCab2.chr27             18745073 63 -  39960074 I
e orcOrc1.KB316932           3016891 0 -  10937097 C
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=-2477.000000
s hg38.chr8_KI270814v1_alt     70703 4 +    141812 -ATTT
s ponAbe2.chr8              59040536 4 + 153482349 -ATTT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48113957 4 + 100215132 -ATTT
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190754519 4 - 190850796 -TTTT
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14118116 4 -  14256875 -TTTT
i saiBol1.JH378165         C 0 C 0
s taeGut2.chrZ              13215824 4 +  72861351 CACT-
i taeGut2.chrZ             C 0 I 3
s cheMyd1.KB497515           3639801 3 +   9092468 -ACT-
i cheMyd1.KB497515         n 653 C 0
s chrPic2.chrUn_KK082917v1  12456463 3 -  13974604 -ACT-
i chrPic2.chrUn_KK082917v1 n 672 C 0
e odoRosDiv1.KB229312         750185 2 -   2017862 I
e canFam3.chr16             18192716 0 -  59632846 C
e felCat8.chrB1             20474662 206 + 206538554 I
e oviAri3.chr26             17845457 46 +  44077779 I
e bosTau8.chr27             18218766 205 +  45407902 I
e panHod1.KE114653           1503331 46 -   2937107 I
e capHir1.chr27             17930931 46 +  44118849 I
e ornAna1.Ultra479           3871811 995 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE027501              2856 0 +     16385 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55056121 830 +  59856998 I
e anoCar2.chr3             144852042 0 + 204416410 I
e pseHum1.KB221303            458855 896 -   1055857 I
e zonAlb1.KB913240            786789 751 -    852449 I
e colLiv1.KB375368            172441 2 +  19163802 I
e allMis1.JH732700            227828 0 -   1095808 I
e falPer1.KB390515           2967599 0 -   4376501 I
e falChe1.KB398104           5465398 0 -   9141934 I
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr4              62358179 0 +  90216835 I
e geoFor1.JH739942           1278603 862 +   5104860 I
e melGal1.chr4              45134349 0 +  74864452 I
e anaPla1.KB742960            138948 1155 +    531124 I
e amaVit1.KB267266             44469 1 +     45143 I
e apaSpi1.KB929668           5961518 314 -  12308914 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556598           4026166 0 +  13137711 I
e monDom5.chr5             230633970 0 - 304825324 I
e equCab2.chr27             18745073 63 -  39960074 I
e orcOrc1.KB316932           3016891 0 -  10937097 C
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=-3083.000000
s hg38.chr8_KI270814v1_alt     70707 7 +    141812 T--AACATT
s ponAbe2.chr8              59040540 7 + 153482349 T--AACATT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48113961 7 + 100215132 T--AACATT
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190754523 9 - 190850796 TTAACTGCT
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14118120 9 -  14256875 TTAACTGCT
i saiBol1.JH378165         C 0 C 0
s ornAna1.Contig22913           7298 8 +      9822 -TCACCCTC
i ornAna1.Contig22913      n 995 C 0
s cheMyd1.KB497515           3639804 7 +   9092468 --TAACTTT
i cheMyd1.KB497515         C 0 I 1
s chrPic2.chrUn_KK082917v1  12456466 7 -  13974604 --TAACTTT
i chrPic2.chrUn_KK082917v1 C 0 I 1
e odoRosDiv1.KB229312         750185 2 -   2017862 I
e canFam3.chr16             18192716 0 -  59632846 C
e felCat8.chrB1             20474662 206 + 206538554 I
e oviAri3.chr26             17845457 46 +  44077779 I
e bosTau8.chr27             18218766 205 +  45407902 I
e panHod1.KE114653           1503331 46 -   2937107 I
e capHir1.chr27             17930931 46 +  44118849 I
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE027501              2856 0 +     16385 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55056121 830 +  59856998 I
e anoCar2.chr3             144852042 0 + 204416410 I
e pseHum1.KB221303            458855 896 -   1055857 I
e zonAlb1.KB913240            786789 751 -    852449 I
e colLiv1.KB375368            172441 2 +  19163802 I
e allMis1.JH732700            227828 0 -   1095808 I
e falPer1.KB390515           2967599 0 -   4376501 I
e falChe1.KB398104           5465398 0 -   9141934 I
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr4              62358179 0 +  90216835 I
e geoFor1.JH739942           1278603 862 +   5104860 I
e melGal1.chr4              45134349 0 +  74864452 I
e anaPla1.KB742960            138948 1155 +    531124 I
e amaVit1.KB267266             44469 1 +     45143 I
e apaSpi1.KB929668           5961518 314 -  12308914 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556598           4026166 0 +  13137711 I
e monDom5.chr5             230633970 0 - 304825324 I
e taeGut2.chrZ              13215828 3 +  72861351 I
e equCab2.chr27             18745073 63 -  39960074 I
e orcOrc1.KB316932           3016891 0 -  10937097 C
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=2548.000000
s hg38.chr8_KI270814v1_alt     70714 1 +    141812 A
s ponAbe2.chr8              59040547 1 + 153482349 A
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48113968 1 + 100215132 A
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190754532 1 - 190850796 A
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14118129 1 -  14256875 A
i saiBol1.JH378165         C 0 C 0
s allMis1.JH737334             61605 1 -    565068 A
i allMis1.JH737334         I 4702 C 0
s cheMyd1.KB497515           3639812 1 +   9092468 A
i cheMyd1.KB497515         I 1 C 0
s chrPic2.chrUn_KK082917v1  12456474 1 -  13974604 A
i chrPic2.chrUn_KK082917v1 I 1 C 0
e odoRosDiv1.KB229312         750185 2 -   2017862 I
e canFam3.chr16             18192716 0 -  59632846 C
e felCat8.chrB1             20474662 206 + 206538554 I
e oviAri3.chr26             17845457 46 +  44077779 I
e bosTau8.chr27             18218766 205 +  45407902 I
e panHod1.KE114653           1503331 46 -   2937107 I
e capHir1.chr27             17930931 46 +  44118849 I
e ornAna1.Contig22913           7306 0 +      9822 C
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.KE027501              2856 0 +     16385 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55056121 830 +  59856998 I
e anoCar2.chr3             144852042 0 + 204416410 I
e pseHum1.KB221303            458855 896 -   1055857 I
e zonAlb1.KB913240            786789 751 -    852449 I
e colLiv1.KB375368            172441 2 +  19163802 I
e falPer1.KB390515           2967599 0 -   4376501 I
e falChe1.KB398104           5465398 0 -   9141934 I
e macEug2.GL108065             83888 651 -    187545 T
e galGal4.chr4              62358179 0 +  90216835 I
e geoFor1.JH739942           1278603 862 +   5104860 I
e melGal1.chr4              45134349 0 +  74864452 I
e anaPla1.KB742960            138948 1155 +    531124 I
e amaVit1.KB267266             44469 1 +     45143 I
e apaSpi1.KB929668           5961518 314 -  12308914 T
e pelSin1.JH208680           8419308 1978 -  16024077 T
e melUnd1.JH556598           4026166 0 +  13137711 I
e monDom5.chr5             230633970 0 - 304825324 I
e taeGut2.chrZ              13215828 3 +  72861351 I
e equCab2.chr27             18745073 63 -  39960074 I
e orcOrc1.KB316932           3016891 0 -  10937097 C
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=58993.000000
s hg38.chr8_KI270814v1_alt         70715 126 +    141812 TTTTCAGCCACTTTATTAATTGTGGGGTT--A-AGGGTAGGATAGATCTAATGCCCATTT---CAC--ATGTGTTGCAACATCAGAGATTATGGTTTTCATTAAAAACA-TCAGAGCTAAATTCCTTTTCAA----------AAA
s ponAbe2.chr8                  59040548 126 + 153482349 TTTTCAGGCACTTTATTAATTGTGGGGTT--A-AGGGTAGGATAGATGTAACGCCCATTT---CAC--ACGTGTTGCAACATCAGAGATGATGGTTTTCATTAAAAACA-TCAGAGCTAAATTCCTTTTAAA----------AAA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48113969 126 + 100215132 TTTTCAGCCACTTTATTAATTGTGGGGTT--A-AGGGTAGGATAGATGTAACGCCCATTT---CAC--ACGTGTTGCAACATCAGAGATGATGGTTTTCATTAAAAACA-TCAGAGCTAAATTCCTTTTAAA----------AAA
i nomLeu3.chr16                C 0 C 0
s calJac3.chr3                 190754533 139 - 190850796 GTTTCAGCCACTTTGTTAATGGTGGAGTT--AGAGGGAAGGACAGATGTAACATCCATTT---CACATATATATTGCAACATCAAAGATACTGGTTCTTATTGAAAACA-CCAGATCTAAATTCCTTCTAAAATATATTTTTAAA
i calJac3.chr3                 C 0 C 0
s saiBol1.JH378165              14118130 139 -  14256875 CTTTCAGCCACTTTGTTAATGGTGGGGTT--AGAGGGAAGGATAGATGTAACACCCATTT---CACATATATGTTGCAACATCAAAGATACTGGTTTTTATTAAAAACA-CCAGATCTAAATTCCTTCTAAAATATATTTTGAAA
i saiBol1.JH378165             C 0 C 0
s monDom5.chr3                 315953219 122 - 527952102 TTTATAGCCACTTCACTAAGTCATGGGTTAAG-ATGGCAGGAGAGCTAAAACACACCCTTTTCCAC------------TCATCAAAAATGTTGATTTTGGTAGAAAAAAATGACTATTAAATTCTTTCTGAA----------ATG
i monDom5.chr3                 n 0 C 0
s sarHar1.chr2_GL841277_random    377641 112 -   1446407 TTTATAGCCACTTCACTAAGTCATGGATT--G-GAGGCAGGATAGCTATTACATACCCTT---CAC------------TCATCAAAAA--TTGAttttggtagaaaaaa---aatattaaattctttctgAA----------ATG
i sarHar1.chr2_GL841277_random N 0 C 0
s ornAna1.Contig22913               7306 124 +      9822 TTCTCAGCCACTTCACTAAGCACGGGGTT--AAATGGCAGGGTGGATCAAATACACACTT---CAT---TAGAATCGGACAGCAGAAACATTGATATGTGTTAAACTCA-GGACTTCTTA--TTTTTGGGAA----------ATG
i ornAna1.Contig22913          C 0 C 0
s falChe1.KB398121               1473571 123 +   3546035 TTCTGAGCTATTTTATTGCACAAGGAGAT--A-GATACTTGATGGATTACATCTTGGTTT---GTT--TAAGAAGTCAACACCAGAAGCGTGTCCCTTTGTCAATGC---TCTGTGTTACATAATTT-TGGA----------AAG
i falChe1.KB398121             n 0 C 0
s falPer1.KB390921               1611509 123 +   3698665 TTCTGAGCTGTTTTATTGCACAAGGAGAT--A-GATACTTGATGGATTACATCTTGGTTT---GTT--TAAGAAGTCAACACCAGAAGCGTGTCCCTTTGTCAATGC---TCTGTGTTACATGATTT-TGGA----------AAG
i falPer1.KB390921             n 0 C 0
s taeGut2.chrZ                  13215831 123 +  72861351 TTCAGAGTTTTTTTACTGCACAAGGAGAC--A-AGTATTTGATGGATTAGATCTTGATTT---GTT--CAAACAGCCAAGACCAGAATGGTGTCCCTTTGTCAGTGA---TCTGT-TTCCACAGTTTCTGAA----------GAA
i taeGut2.chrZ                 I 3 C 0
s allMis1.JH737334                 61606 115 -    565068 CTTCCAGCTACTTTATAATAGATGGCG-T--A-AATGGTAGAAGG-----GACGTGAATT---CAT--AGAACAGTCAACATGAAAACTGCATACC--CATTAAAAA---TATGGGCTGCTTTTTTC-TGAA----------GAG
i allMis1.JH737334             C 0 C 0
s cheMyd1.KB497515               3639813 116 +   9092468 TCTTCAACCACTTTGTAATACATGGCATT--A-AAT----GATAGAATAGACATGAAT------GT--TAAACAGCCAACCCAACAAACAC-TACTTTTGTTAAAAA---TCGTGCTTGAATTCTTTCTGAA----------AAA
i cheMyd1.KB497515             C 0 C 0
s chrPic2.chrUn_KK082917v1      12456475 110 -  13974604 TTTTCAACCACTTTGTAACACATGACATT--A-AAT----GATAGAATAGAC----AT------GT--TAAATAGTCAACCCAAGAAACGC-TACTTTTGTTAAAAA---TCGTGCTTGAATTCTTTCTG------------AAA
i chrPic2.chrUn_KK082917v1     C 0 C 0
e odoRosDiv1.KB229312             750185   2 -   2017862 I
e canFam3.chr16                 18192716   0 -  59632846 C
e felCat8.chrB1                 20474662 206 + 206538554 I
e oviAri3.chr26                 17845457  46 +  44077779 I
e bosTau8.chr27                 18218766 205 +  45407902 I
e panHod1.KE114653               1503331  46 -   2937107 I
e capHir1.chr27                 17930931  46 +  44118849 I
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.KE027501                  2856   0 +     16385 I
e astMex1.KB882082               3904961 703 -   8876373 T
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chrZ                  55056121 830 +  59856998 I
e anoCar2.chr3                 144852042   0 + 204416410 I
e pseHum1.KB221303                458855 896 -   1055857 I
e zonAlb1.KB913240                786789 751 -    852449 I
e colLiv1.KB375368                172441   2 +  19163802 I
e macEug2.GL108065                 83888 651 -    187545 T
e galGal4.chr4                  62358179   0 +  90216835 I
e geoFor1.JH739942               1278603 862 +   5104860 I
e melGal1.chr4                  45134349   0 +  74864452 I
e anaPla1.KB742960                138948 1155 +    531124 I
e amaVit1.KB267266                 44469   1 +     45143 I
e apaSpi1.KB929668               5961518 314 -  12308914 T
e pelSin1.JH208680               8419308 1978 -  16024077 T
e melUnd1.JH556598               4026166   0 +  13137711 I
e equCab2.chr27                 18745073  63 -  39960074 I
e orcOrc1.KB316932               3016891   0 -  10937097 C
e rheMac3.chr8                  61650881 41461 + 150158102 I
e macFas5.chr8                  58323911 42259 + 146850525 I
e chlSab2.chr8                  53249873 36839 + 139301422 I
e panTro4.chr8                  54977249 47550 + 143986469 I

a score=-349373.000000
s hg38.chr8_KI270814v1_alt         70841 116 +    141812 AGA-CATTGTTACTGTTA---------GTACCTT-----GGGGAA----------TGTTGTAG-----------TCTT---A------TGAATGCTGAT-ACGTTTATT---TGAGCCAATTGAA------TATTA---------TCTCTAATATAAA--CTATAATTTAC-----T-GTG----------------------TGA----------TTCC
s ponAbe2.chr8                  59040674 116 + 153482349 AGA-CATTGTTACTGTTA---------GTACCTT-----GGGGAA----------TATTGTAA-----------TCTT---A------TGAATACTGAT-ACGTTTATT---TGAGCCAATTGAA------TATTA---------TCTCTAATATAAA--CTATAATTTAC-----T-GTG----------------------TGA----------TTCC
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48114095 116 + 100215132 AGA-CATTGTTACAGTTA---------GTACCTT-----GGGGAA----------TGTTGTAA-----------TCTT---A------TGAATGCTGAT-ACGTTTATT---TGAGCCAATTGAA------TATTA---------TCTCTAATATAAA--CTATAATTTAC-----T-GTG----------------------TCA----------TTCC
i nomLeu3.chr16                C 0 C 0
s calJac3.chr3                 190754672 117 - 190850796 AGG-CA---GTACACTTG---------GCACCTT------GGAAA----------TGCTGAAA-----------TGTTATCA------TGAATGCTGGC-ATATTTGTTA--TGACCCAACTGAA------TATTA---------TCTTCAATATGAA--CTATAATTTAC-----TGGTA----------------------TGA----------TCAT
i calJac3.chr3                 C 0 C 0
s saiBol1.JH378165              14118269 117 -  14256875 AAG-CA---GTACTCTTG---------GCACCTT------GGAAA----------TGCTGAAA-----------TGTTATCA------TGAATGCTGGT-ATATTTGTTA--CGACCCAATTGAA------TATTA---------TCTTCAATATGAA--CTATAATTTAC-----TGGTA----------------------TGA----------TCAC
i saiBol1.JH378165             C 0 C 0
s monDom5.chr3                 315953341 130 - 527952102 AAA-AGTTGCTATATATATGTACACATATACTCT------GAAAA----------TGTACAGTTATC-AATGA-TTTT---A------CAAATGCTGGTAATATGTTTTAAGAGAGCTAACCAAA-------ATGG------------TCAATA--AA--TTATG--CTAC-----TGATT----------------------TGA----------TTAC
i monDom5.chr3                 C 0 C 0
s sarHar1.chr2_GL841277_random    377753 156 -   1446407 GAA-AGTT--------------TAAATGTACTCT------GAGAA----------TGTAGTATTatc-aatgattttt---a------taaatgctGGT-ATATGTATTAAGAGAGCTACCCATA-------ATTG---------TCTTCAATA--AA--TTTTG--CTACTGATTTGATCACTGTCCCTTGTTCAAAGAGAATGAAGCTCCCTTTTTAC
i sarHar1.chr2_GL841277_random C 0 C 0
s ornAna1.Contig22913               7430 137 +      9822 AGA-AGTTGGTACAT------------GACTTCT------GGAAAACGAGGACGGTGCCAAAAAGGCTCATGTTTCCTGCCG------CGAATGCTGGT-ATATGTGACCCGGGAGCCAACAGTC-------ATCC---------TTCCAACCAAGAAACCCTCCATCTCC-----T-CTG----------------------AAA----------G---
i ornAna1.Contig22913          C 0 C 0
s falChe1.KB398121               1473694 113 +   3546035 GGA-AGT--------------------TGACTTT---------------------TGTTGTAA---------ATCTCT---AGCATGTTAAGTGCTGGT-ATTTGTGTTAGTACATCCAATGGCTCCATTGcactctttttcttccttggggCAC-AC--TCAAGGGCAAG-------------------------------------------------
i falChe1.KB398121             C 0 I 3
s falPer1.KB390921               1611632 113 +   3698665 GGA-AGT--------------------TGACTTT---------------------TGTTGTAA---------ATCTCT---AGCATGTTAAGTGCTGGT-ATTTGTGTTAGTACATCCAATGGCTCCATTGcactctttttcttccttggggCAC-AC--TCAAGGGCAAG-------------------------------------------------
i falPer1.KB390921             C 0 I 3
s taeGut2.chrZ                  13215954 106 +  72861351 CAA-AGT--------------------TGACTTC---------------------CATTGTAC---------ATCTCT---AGCATG-TAAGCACTGGT-ATT--TGTTAGCACAGGCAATGGCTTCATTGCACTATTTTT----CCTGGGGCAT-AC--TCAAAGGCAAA-------------------------------------------------
i taeGut2.chrZ                 C 0 I 3
s allMis1.JH737334                 61721 121 -    565068 GAA-AGTTTGTATAATGAG--------TAGCTTTCTGCAAACAAA----------CGTACAAA---------ATCCCT---ACTGCT-TATGTGCTGGT-TTTTGTGCTACAAGATAAACTGGTTCCCTGCCAC-----------CCTCAGGTAC-AC--T---GGGTTTA-------------------------------------------------
i allMis1.JH737334             C 0 I 1
s cheMyd1.KB497515               3639929 122 +   9092468 ----AGTTTATTCGTGAA---------CAGCTTT-TGCAAATGAA----------CCTACAAA---------ATTCTT---AGTGCC-TACATCCTGAT-ACTTGTGCTAATGGATCCAATGGTTCTCTGCCCTTG---------TCCCAAATAC-TC-TTGACAGTTTAC-------------------------------------------------
i cheMyd1.KB497515             C 0 I 1
s chrPic2.chrUn_KK082917v1      12456585 106 -  13974604 ----AGTTTATACATTAA---------CAGCTTT-TGCAAATTAA----------C---TAAA---------ATTCCT---AGTGCC-TAGATCCTGAT-ACTTATACTA----ATCCAA--------TGCCCCCA---------TGCCCAATAC-TC--TGACAGTTTAC-------------------------------------------------
i chrPic2.chrUn_KK082917v1     C 0 I 1
s pelSin1.JH211373               2648917  95 -   4257854 AAACACTACGATTGTTGG---------CCCCTTC-CAC-TCTGAA----------CTGTAGAA---------GTCCCC---AGT-----------------CTTCAAGTA----GTTGAA----------GTTTTG---------TTTACAATAc-at--ctacaattttt-------------------------------------------------
i pelSin1.JH211373             n 1978 I 1
e odoRosDiv1.KB229312             750185   2 -   2017862 I
e canFam3.chr16                 18192716   0 -  59632846 C
e felCat8.chrB1                 20474662 206 + 206538554 I
e oviAri3.chr26                 17845457  46 +  44077779 I
e bosTau8.chr27                 18218766 205 +  45407902 I
e panHod1.KE114653               1503331  46 -   2937107 I
e capHir1.chr27                 17930931  46 +  44118849 I
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.KE027501                  2856   0 +     16385 I
e astMex1.KB882082               3904961 703 -   8876373 T
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chrZ                  55056121 830 +  59856998 I
e anoCar2.chr3                 144852042   0 + 204416410 I
e pseHum1.KB221303                458855 896 -   1055857 I
e zonAlb1.KB913240                786789 751 -    852449 I
e colLiv1.KB375368                172441   2 +  19163802 I
e macEug2.GL108065                 83888 651 -    187545 T
e galGal4.chr4                  62358179   0 +  90216835 I
e geoFor1.JH739942               1278603 862 +   5104860 I
e melGal1.chr4                  45134349   0 +  74864452 I
e anaPla1.KB742960                138948 1155 +    531124 I
e amaVit1.KB267266                 44469   1 +     45143 I
e apaSpi1.KB929668               5961518 314 -  12308914 T
e melUnd1.JH556598               4026166   0 +  13137711 I
e equCab2.chr27                 18745073  63 -  39960074 I
e orcOrc1.KB316932               3016891   0 -  10937097 C
e rheMac3.chr8                  61650881 41461 + 150158102 I
e macFas5.chr8                  58323911 42259 + 146850525 I
e chlSab2.chr8                  53249873 36839 + 139301422 I
e panTro4.chr8                  54977249 47550 + 143986469 I

a score=2018.000000
s hg38.chr8_KI270814v1_alt         70957 2 +    141812 TC
s ponAbe2.chr8                  59040790 2 + 153482349 TC
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48114211 2 + 100215132 TT
i nomLeu3.chr16                C 0 C 0
s calJac3.chr3                 190754789 2 - 190850796 TC
i calJac3.chr3                 C 0 C 0
s saiBol1.JH378165              14118386 2 -  14256875 TC
i saiBol1.JH378165             C 0 C 0
s monDom5.chr3                 315953471 2 - 527952102 TA
i monDom5.chr3                 C 0 C 0
s sarHar1.chr2_GL841277_random    377909 2 -   1446407 AG
i sarHar1.chr2_GL841277_random C 0 C 0
s colLiv1.KB375452               1390011 2 +   4234233 tt
i colLiv1.KB375452             I 874 C 0
s falChe1.KB398121               1473810 2 +   3546035 TC
i falChe1.KB398121             I 3 I 2
s falPer1.KB390921               1611748 2 +   3698665 TC
i falPer1.KB390921             I 3 I 2
s taeGut2.chrZ                  13216063 2 +  72861351 TC
i taeGut2.chrZ                 I 3 I 16
s allMis1.JH737334                 61843 2 -    565068 GC
i allMis1.JH737334             I 1 I 2
s cheMyd1.KB497515               3640052 2 +   9092468 CC
i cheMyd1.KB497515             I 1 C 0
s chrPic2.chrUn_KK082917v1      12456692 2 -  13974604 CC
i chrPic2.chrUn_KK082917v1     I 1 C 0
s pelSin1.JH211373               2649013 2 -   4257854 tt
i pelSin1.JH211373             I 1 C 0
e odoRosDiv1.KB229312             750185 2 -   2017862 I
e canFam3.chr16                 18192716 0 -  59632846 C
e felCat8.chrB1                 20474662 206 + 206538554 I
e oviAri3.chr26                 17845457 46 +  44077779 I
e bosTau8.chr27                 18218766 205 +  45407902 I
e panHod1.KE114653               1503331 46 -   2937107 I
e capHir1.chr27                 17930931 46 +  44118849 I
e ornAna1.Contig22913               7567 0 +      9822 C
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.KE027501                  2856 0 +     16385 I
e astMex1.KB882082               3904961 703 -   8876373 T
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chrZ                  55056121 830 +  59856998 I
e anoCar2.chr3                 144852042 0 + 204416410 I
e pseHum1.KB221303                458855 896 -   1055857 I
e zonAlb1.KB913240                786789 751 -    852449 I
e macEug2.GL108065                 83888 651 -    187545 T
e galGal4.chr4                  62358179 0 +  90216835 I
e geoFor1.JH739942               1278603 862 +   5104860 I
e melGal1.chr4                  45134349 0 +  74864452 I
e anaPla1.KB742960                138948 1155 +    531124 I
e amaVit1.KB267266                 44469 1 +     45143 I
e apaSpi1.KB929668               5961518 314 -  12308914 T
e melUnd1.JH556598               4026166 0 +  13137711 I
e equCab2.chr27                 18745073 63 -  39960074 I
e orcOrc1.KB316932               3016891 0 -  10937097 C
e rheMac3.chr8                  61650881 41461 + 150158102 I
e macFas5.chr8                  58323911 42259 + 146850525 I
e chlSab2.chr8                  53249873 36839 + 139301422 I
e panTro4.chr8                  54977249 47550 + 143986469 I

a score=-36614.000000
s hg38.chr8_KI270814v1_alt         70959 14 +    141812 TTCC-------TGTTTTACCT
s ponAbe2.chr8                  59040792 14 + 153482349 TTCC-------TGTTTTACCT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48114213 14 + 100215132 TTCC-------TGTTTTACCT
i nomLeu3.chr16                C 0 C 0
s calJac3.chr3                 190754791 14 - 190850796 TTCC-------TGTCTTACCT
i calJac3.chr3                 C 0 C 0
s saiBol1.JH378165              14118388 14 -  14256875 TTCC-------TATCTTACCT
i saiBol1.JH378165             C 0 C 0
s monDom5.chr3                 315953473 12 - 527952102 GTCC-------TTGTTTGT--
i monDom5.chr3                 C 0 C 0
s sarHar1.chr2_GL841277_random    377911 21 -   1446407 GTCCATTgaagttttttatat
i sarHar1.chr2_GL841277_random C 0 C 0
s ornAna1.Contig22913               7567 10 +      9822 -----------CTTCTCACTC
i ornAna1.Contig22913          C 0 C 0
s colLiv1.KB375452               1390013  9 +   4234233 ------------ttcttgcat
i colLiv1.KB375452             C 0 I 5
s falChe1.KB398121               1473814  9 +   3546035 ------------TCCATGTAA
i falChe1.KB398121             I 2 I 3
s falPer1.KB390921               1611752  9 +   3698665 ------------TCCATGTAA
i falPer1.KB390921             I 2 I 3
s ficAlb2.chrZ                  55056951  9 +  59856998 ------------TTCTTGCAT
i ficAlb2.chrZ                 I 830 I 9
s taeGut2.chrZ                  13216081  5 +  72861351 ----------------TACAT
i taeGut2.chrZ                 I 16 I 9
s allMis1.JH737334                 61847  9 -    565068 ------------GTTATGCAG
i allMis1.JH737334             I 2 I 12
s cheMyd1.KB497515               3640054  8 +   9092468 -------------TTCCACAT
i cheMyd1.KB497515             C 0 I 25
s chrPic2.chrUn_KK082917v1      12456694  8 -  13974604 -------------TTCCACAA
i chrPic2.chrUn_KK082917v1     C 0 I 25
s pelSin1.JH211373               2649015  8 -   4257854 -------------ttatagat
i pelSin1.JH211373             C 0 I 11
e odoRosDiv1.KB229312             750185  2 -   2017862 I
e canFam3.chr16                 18192716  0 -  59632846 C
e felCat8.chrB1                 20474662 206 + 206538554 I
e oviAri3.chr26                 17845457 46 +  44077779 I
e bosTau8.chr27                 18218766 205 +  45407902 I
e panHod1.KE114653               1503331 46 -   2937107 I
e capHir1.chr27                 17930931 46 +  44118849 I
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.KE027501                  2856  0 +     16385 I
e astMex1.KB882082               3904961 703 -   8876373 T
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e anoCar2.chr3                 144852042  0 + 204416410 I
e pseHum1.KB221303                458855 896 -   1055857 I
e zonAlb1.KB913240                786789 751 -    852449 I
e macEug2.GL108065                 83888 651 -    187545 T
e galGal4.chr4                  62358179  0 +  90216835 I
e geoFor1.JH739942               1278603 862 +   5104860 I
e melGal1.chr4                  45134349  0 +  74864452 I
e anaPla1.KB742960                138948 1155 +    531124 I
e amaVit1.KB267266                 44469  1 +     45143 I
e apaSpi1.KB929668               5961518 314 -  12308914 T
e melUnd1.JH556598               4026166  0 +  13137711 I
e equCab2.chr27                 18745073 63 -  39960074 I
e orcOrc1.KB316932               3016891  0 -  10937097 C
e rheMac3.chr8                  61650881 41461 + 150158102 I
e macFas5.chr8                  58323911 42259 + 146850525 I
e chlSab2.chr8                  53249873 36839 + 139301422 I
e panTro4.chr8                  54977249 47550 + 143986469 I

a score=-34790.000000
s hg38.chr8_KI270814v1_alt         70973 17 +    141812 ATATATAC------------------------------------------TCAAAGTGA
s ponAbe2.chr8                  59040806 17 + 153482349 ATATATAC------------------------------------------TCAAAGTGA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48114227 17 + 100215132 ATATATAC------------------------------------------TCAAAGTGA
i nomLeu3.chr16                C 0 C 0
s calJac3.chr3                 190754805 17 - 190850796 GTATATAC------------------------------------------TCAAAGTGA
i calJac3.chr3                 C 0 C 0
s saiBol1.JH378165              14118402 17 -  14256875 GTATATAC------------------------------------------TCAAAGTGA
i saiBol1.JH378165             C 0 C 0
s monDom5.chr3                 315953485  9 - 527952102 --------------------------------------------------GGAAGATAA
i monDom5.chr3                 C 0 C 0
s sarHar1.chr2_GL841277_random    377932 59 -   1446407 atatatatatatatatttttttttttccgtcTCACCCATaaagctgattaaaaaaaaaa
i sarHar1.chr2_GL841277_random C 0 C 0
s ornAna1.Contig22913               7577 16 +      9822 ATATACAC------------------------------------------TCCACGCT-
i ornAna1.Contig22913          C 0 C 0
s colLiv1.KB375452               1390027 17 +   4234233 ATATATGG------------------------------------------TGAGATCCA
i colLiv1.KB375452             I 5 C 0
s falChe1.KB398121               1473826 16 +   3546035 -CTTGTGT------------------------------------------TCTGAGCGA
i falChe1.KB398121             I 3 C 0
s falPer1.KB390921               1611764 16 +   3698665 -CTTGTGT------------------------------------------TCTGAGCGA
i falPer1.KB390921             I 3 C 0
s ficAlb2.chrZ                  55056969 13 +  59856998 ATTCATGG------------------------------------------TATAA----
i ficAlb2.chrZ                 I 9 I 3
s zonAlb1.KB913240                787540 17 -    852449 ATACATGG------------------------------------------TATAATTCa
i zonAlb1.KB913240             I 751 C 0
s taeGut2.chrZ                  13216095 17 +  72861351 ATACATGG------------------------------------------TATAATTCA
i taeGut2.chrZ                 I 9 C 0
s allMis1.JH737334                 61868  8 -    565068 TTGCATGT---------------------------------------------------
i allMis1.JH737334             I 12 I 1
s cheMyd1.KB497515               3640087 17 +   9092468 TCAAGTAG------------------------------------------TTGAAGTTT
i cheMyd1.KB497515             I 25 I 12
s chrPic2.chrUn_KK082917v1      12456727 17 -  13974604 TCGAGTAG------------------------------------------TTGAAGTTT
i chrPic2.chrUn_KK082917v1     I 25 I 9
s pelSin1.JH211373               2649034 17 -   4257854 CTGTACAG------------------------------------------TTACAATCC
i pelSin1.JH211373             I 11 I 2
e odoRosDiv1.KB229312             750185  2 -   2017862 I
e canFam3.chr16                 18192716  0 -  59632846 C
e felCat8.chrB1                 20474662 206 + 206538554 I
e oviAri3.chr26                 17845457 46 +  44077779 I
e bosTau8.chr27                 18218766 205 +  45407902 I
e panHod1.KE114653               1503331 46 -   2937107 I
e capHir1.chr27                 17930931 46 +  44118849 I
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.KE027501                  2856  0 +     16385 I
e astMex1.KB882082               3904961 703 -   8876373 T
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e anoCar2.chr3                 144852042  0 + 204416410 I
e pseHum1.KB221303                458855 896 -   1055857 I
e macEug2.GL108065                 83888 651 -    187545 T
e galGal4.chr4                  62358179  0 +  90216835 I
e geoFor1.JH739942               1278603 862 +   5104860 I
e melGal1.chr4                  45134349  0 +  74864452 I
e anaPla1.KB742960                138948 1155 +    531124 I
e amaVit1.KB267266                 44469  1 +     45143 I
e apaSpi1.KB929668               5961518 314 -  12308914 T
e melUnd1.JH556598               4026166  0 +  13137711 I
e equCab2.chr27                 18745073 63 -  39960074 I
e orcOrc1.KB316932               3016891  0 -  10937097 C
e rheMac3.chr8                  61650881 41461 + 150158102 I
e macFas5.chr8                  58323911 42259 + 146850525 I
e chlSab2.chr8                  53249873 36839 + 139301422 I
e panTro4.chr8                  54977249 47550 + 143986469 I

a score=-124871.000000
s hg38.chr8_KI270814v1_alt         70990 34 +    141812 ATGATT----GTGT-TTAGTGAACA-------------TTTCTTTAG----GTAAT
s ponAbe2.chr8                  59040823 34 + 153482349 ATGATT----GTGT-TTAGTGAACA-------------TTTCTTTAG----GTAAT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48114244 34 + 100215132 ATGATT----ATGT-TTAGTGAACA-------------TTTCTTTAG----GTAAT
i nomLeu3.chr16                C 0 C 0
s calJac3.chr3                 190754822 38 - 190850796 GTGATTTTCCCGGT-TTAGCAAATT-------------GTTCTCTCG----GTAAT
i calJac3.chr3                 C 0 C 0
s saiBol1.JH378165              14118419 38 -  14256875 GTGATTTCTCATGT-TTAGCAAATT-------------GTTCTCTCG----GTAAT
i saiBol1.JH378165             C 0 I 22
s monDom5.chr3                 315953494 36 - 527952102 GAGGCTTCCTTTGT-ACAG-------------------GTTCTTTGAAGTTTTGTT
i monDom5.chr3                 C 0 I 12
s sarHar1.chr2_GL841277_random    377991 32 -   1446407 aatgtattgctgGT-ATAA-------------------ATTCTTCAG----TTGAT
i sarHar1.chr2_GL841277_random C 0 I 1
s ornAna1.Contig22913               7593 40 +      9822 ----TT----TTGC-TCAACAGAAA---GGCCAACTGGAATTTGTCG----GCAAA
i ornAna1.Contig22913          C 0 I 6
s colLiv1.KB375452               1390044 34 +   4234233 -CTGTC----CTGC-TTGTTTCAAT-------------GCTCTTGAGA---GTACC
i colLiv1.KB375452             C 0 C 0
s falChe1.KB398121               1473842 29 +   3546035 ------------GT-ATGTTGTAAAATGGGCT------GCTCT--------GTTTT
i falChe1.KB398121             C 0 C 0
s falPer1.KB390921               1611780 29 +   3698665 ------------GT-ATGTTGTAAAATGGGCT------GTTCT--------GTTTT
i falPer1.KB390921             C 0 C 0
s ficAlb2.chrZ                  55056985 35 +  59856998 agtgtt----ctgt-ttgttttaaa-------------gctCTTGAGA---GTGCC
i ficAlb2.chrZ                 I 3 C 0
s zonAlb1.KB913240                787557 34 -    852449 -gtgtt----ctgt-ttgttttaaa-------------gctcTTGAGA---GTGCC
i zonAlb1.KB913240             C 0 C 0
s geoFor1.JH739942               1279465 35 +   5104860 Acggtt----ctgt-ttgttttaaa-------------gctcTTGAGA---GTGCC
i geoFor1.JH739942             I 862 C 0
s taeGut2.chrZ                  13216112 34 +  72861351 -AGGTT----CTGT-TTGTTTTAAA-------------GCTCTTGAGA---GTGTC
i taeGut2.chrZ                 C 0 C 0
s allMis1.JH737334                 61877 31 -    565068 GCATTT----AAGTGTTGTATGAAT-------------GTTTT--------GTTAT
i allMis1.JH737334             I 1 C 0
s cheMyd1.KB497515               3640116 34 +   9092468 -GTGGC----TGTA-CAGTTACAAT-------------CCTTTTGCTT---GGCTA
i cheMyd1.KB497515             I 12 C 0
s chrPic2.chrUn_KK082917v1      12456753 34 -  13974604 -GTGGC----TGTA-CAGTTACAAT-------------CCTTTTGCTT---GGATA
i chrPic2.chrUn_KK082917v1     I 9 C 0
s pelSin1.JH211373               2649053 34 -   4257854 -ATGCT----TAGA-CATATTTTAG-------------GTTCTTGAGG---GAACC
i pelSin1.JH211373             I 2 C 0
e odoRosDiv1.KB229312             750185  2 -   2017862 I
e canFam3.chr16                 18192716  0 -  59632846 C
e felCat8.chrB1                 20474662 206 + 206538554 I
e oviAri3.chr26                 17845457 46 +  44077779 I
e bosTau8.chr27                 18218766 205 +  45407902 I
e panHod1.KE114653               1503331 46 -   2937107 I
e capHir1.chr27                 17930931 46 +  44118849 I
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.KE027501                  2856  0 +     16385 I
e astMex1.KB882082               3904961 703 -   8876373 T
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e anoCar2.chr3                 144852042  0 + 204416410 I
e pseHum1.KB221303                458855 896 -   1055857 I
e macEug2.GL108065                 83888 651 -    187545 T
e galGal4.chr4                  62358179  0 +  90216835 I
e melGal1.chr4                  45134349  0 +  74864452 I
e anaPla1.KB742960                138948 1155 +    531124 I
e amaVit1.KB267266                 44469  1 +     45143 I
e apaSpi1.KB929668               5961518 314 -  12308914 T
e melUnd1.JH556598               4026166  0 +  13137711 I
e equCab2.chr27                 18745073 63 -  39960074 I
e orcOrc1.KB316932               3016891  0 -  10937097 C
e rheMac3.chr8                  61650881 41461 + 150158102 I
e macFas5.chr8                  58323911 42259 + 146850525 I
e chlSab2.chr8                  53249873 36839 + 139301422 I
e panTro4.chr8                  54977249 47550 + 143986469 I

a score=-228.000000
s hg38.chr8_KI270814v1_alt         71024 1 +    141812 A
s ponAbe2.chr8                  59040857 1 + 153482349 A
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48114278 1 + 100215132 A
i nomLeu3.chr16                C 0 C 0
s monDom5.chr3                 315953542 1 - 527952102 A
i monDom5.chr3                 I 12 C 0
s sarHar1.chr2_GL841277_random    378024 1 -   1446407 G
i sarHar1.chr2_GL841277_random I 1 C 0
s ornAna1.Contig22913               7639 1 +      9822 A
i ornAna1.Contig22913          I 6 C 0
s colLiv1.KB375452               1390078 1 +   4234233 A
i colLiv1.KB375452             C 0 I 3
s falChe1.KB398121               1473871 1 +   3546035 A
i falChe1.KB398121             C 0 I 19
s falPer1.KB390921               1611809 1 +   3698665 A
i falPer1.KB390921             C 0 I 19
s ficAlb2.chrZ                  55057020 1 +  59856998 T
i ficAlb2.chrZ                 C 0 I 3
s zonAlb1.KB913240                787591 1 -    852449 A
i zonAlb1.KB913240             C 0 I 3
s geoFor1.JH739942               1279500 1 +   5104860 A
i geoFor1.JH739942             C 0 I 3
s taeGut2.chrZ                  13216146 1 +  72861351 A
i taeGut2.chrZ                 C 0 I 3
s allMis1.JH737334                 61908 1 -    565068 A
i allMis1.JH737334             C 0 I 12
s cheMyd1.KB497515               3640150 1 +   9092468 C
i cheMyd1.KB497515             C 0 I 1
s chrPic2.chrUn_KK082917v1      12456787 1 -  13974604 C
i chrPic2.chrUn_KK082917v1     C 0 I 1
s pelSin1.JH211373               2649087 1 -   4257854 C
i pelSin1.JH211373             C 0 I 1
e odoRosDiv1.KB229312             750185 2 -   2017862 I
e canFam3.chr16                 18192716 0 -  59632846 C
e felCat8.chrB1                 20474662 206 + 206538554 I
e oviAri3.chr26                 17845457 46 +  44077779 I
e bosTau8.chr27                 18218766 205 +  45407902 I
e panHod1.KE114653               1503331 46 -   2937107 I
e capHir1.chr27                 17930931 46 +  44118849 I
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.KE027501                  2856 0 +     16385 I
e astMex1.KB882082               3904961 703 -   8876373 T
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e anoCar2.chr3                 144852042 0 + 204416410 I
e pseHum1.KB221303                458855 896 -   1055857 I
e macEug2.GL108065                 83888 651 -    187545 T
e galGal4.chr4                  62358179 0 +  90216835 I
e melGal1.chr4                  45134349 0 +  74864452 I
e anaPla1.KB742960                138948 1155 +    531124 I
e amaVit1.KB267266                 44469 1 +     45143 I
e apaSpi1.KB929668               5961518 314 -  12308914 T
e calJac3.chr3                 190754860 0 - 190850796 C
e melUnd1.JH556598               4026166 0 +  13137711 I
e equCab2.chr27                 18745073 63 -  39960074 I
e orcOrc1.KB316932               3016891 0 -  10937097 C
e rheMac3.chr8                  61650881 41461 + 150158102 I
e macFas5.chr8                  58323911 42259 + 146850525 I
e saiBol1.JH378165              14118457 22 -  14256875 I
e chlSab2.chr8                  53249873 36839 + 139301422 I
e panTro4.chr8                  54977249 47550 + 143986469 I

a score=-27884.000000
s hg38.chr8_KI270814v1_alt         71025 21 +    141812 AAAATTAATTTCATTTAAGAA-----------------
s ponAbe2.chr8                  59040858 21 + 153482349 AAAATTAATTTCATTTAAGAA-----------------
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48114279 21 + 100215132 AAAATTAATTTCATTTAAGAA-----------------
i nomLeu3.chr16                C 0 I 4
s calJac3.chr3                 190754860 13 - 190850796 --------TTGCTCTTTAGGT-----------------
i calJac3.chr3                 C 0 I 9
s monDom5.chr3                 315953543 16 - 527952102 AAAAAAAACAAC-----AAAA-----------------
i monDom5.chr3                 C 0 C 0
s sarHar1.chr2_GL841277_random    378025 16 -   1446407 AAATATATCTTC-----AGGA-----------------
i sarHar1.chr2_GL841277_random C 0 C 0
s ornAna1.Contig22913               7640 21 +      9822 AAAACACTCTTGACCACATGA-----------------
i ornAna1.Contig22913          C 0 C 0
s cheMyd1.KB497515               3640152 19 +   9092468 -------------------TGCTTTAGGTTTGAGGGCA
i cheMyd1.KB497515             I 1 C 0
s chrPic2.chrUn_KK082917v1      12456789 19 -  13974604 -------------------TGCTTTAGGTTCGAGGGCA
i chrPic2.chrUn_KK082917v1     I 1 C 0
s pelSin1.JH211373               2649089  2 -   4257854 -------------------GG-----------------
i pelSin1.JH211373             I 1 C 0
e odoRosDiv1.KB229312             750185  2 -   2017862 I
e canFam3.chr16                 18192716  0 -  59632846 C
e felCat8.chrB1                 20474662 206 + 206538554 I
e oviAri3.chr26                 17845457 46 +  44077779 I
e bosTau8.chr27                 18218766 205 +  45407902 I
e panHod1.KE114653               1503331 46 -   2937107 I
e capHir1.chr27                 17930931 46 +  44118849 I
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.KE027501                  2856  0 +     16385 I
e astMex1.KB882082               3904961 703 -   8876373 T
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chrZ                  55057021  3 +  59856998 I
e anoCar2.chr3                 144852042  0 + 204416410 I
e pseHum1.KB221303                458855 896 -   1055857 I
e zonAlb1.KB913240                787592  3 -    852449 I
e colLiv1.KB375452               1390079  3 +   4234233 I
e allMis1.JH737334                 61909 12 -    565068 I
e falPer1.KB390921               1611810 19 +   3698665 I
e falChe1.KB398121               1473872 19 +   3546035 I
e macEug2.GL108065                 83888 651 -    187545 T
e galGal4.chr4                  62358179  0 +  90216835 I
e geoFor1.JH739942               1279501  3 +   5104860 I
e melGal1.chr4                  45134349  0 +  74864452 I
e anaPla1.KB742960                138948 1155 +    531124 I
e amaVit1.KB267266                 44469  1 +     45143 I
e apaSpi1.KB929668               5961518 314 -  12308914 T
e melUnd1.JH556598               4026166  0 +  13137711 I
e taeGut2.chrZ                  13216147  3 +  72861351 I
e equCab2.chr27                 18745073 63 -  39960074 I
e orcOrc1.KB316932               3016891  0 -  10937097 C
e rheMac3.chr8                  61650881 41461 + 150158102 I
e macFas5.chr8                  58323911 42259 + 146850525 I
e saiBol1.JH378165              14118457 22 -  14256875 I
e chlSab2.chr8                  53249873 36839 + 139301422 I
e panTro4.chr8                  54977249 47550 + 143986469 I

a score=-61991.000000
s hg38.chr8_KI270814v1_alt         71046 24 +    141812 AGAAGTAC-----------------------------------------------------------AAAAT--AGTTATT--------------------------AGAG
s ponAbe2.chr8                  59040879 22 + 153482349 --AAGTAC-----------------------------------------------------------AAAAT--AGTTATT--------------------------AGAG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48114304 24 + 100215132 AGAAGTAC-----------------------------------------------------------AAAAT--AGTTATT--------------------------AGAG
i nomLeu3.chr16                I 4 C 0
s calJac3.chr3                 190754882 24 - 190850796 AAAAGTAC-----------------------------------------------------------AAAAT--AGTTATC--------------------------ACAG
i calJac3.chr3                 I 9 C 0
s saiBol1.JH378165              14118479 24 -  14256875 AAAAGTAC-----------------------------------------------------------AAAAC--AGTTATC--------------------------ACAG
i saiBol1.JH378165             I 22 C 0
s monDom5.chr3                 315953559 83 - 527952102 AGATGTATCACTGGTATAGGTTCCCCAGTTCCTGGAAACATACCTTCAAAGAGAGTGAATTCTGCCAGCAAT--TAATGTT--------------------------CCGG
i monDom5.chr3                 C 0 C 0
s sarHar1.chr2_GL841277_random    378041 31 -   1446407 AAGAGCAT------------TCTGCCA----------------------------------------GCAAT--GATTATT--------------------------CTGG
i sarHar1.chr2_GL841277_random C 0 C 0
s ornAna1.Contig22913               7661 30 +      9822 -----------------AGACCTTCCTGTTG------------------------------------CCAGT--GAATATT--------------------------CTGC
i ornAna1.Contig22913          C 0 C 0
s colLiv1.KB375452               1390082 18 +   4234233 -------------------------------------------------------------------AAGACACAATCATT--------------------------GAAG
i colLiv1.KB375452             I 3 I 35
s falChe1.KB398121               1473891 18 +   3546035 -------------------------------------------------------------------AAGATGCAATCATC--------------------------AAAG
i falChe1.KB398121             I 19 I 15
s falPer1.KB390921               1611829 18 +   3698665 -------------------------------------------------------------------AAGATGCAATCATC--------------------------AAAG
i falPer1.KB390921             I 19 I 15
s ficAlb2.chrZ                  55057024 18 +  59856998 -------------------------------------------------------------------AAGATGCAGTCATC--------------------------AAAG
i ficAlb2.chrZ                 I 3 I 15
s zonAlb1.KB913240                787595 18 -    852449 -------------------------------------------------------------------AAGATGCAGTTATC--------------------------AAAG
i zonAlb1.KB913240             I 3 I 15
s geoFor1.JH739942               1279504 18 +   5104860 -------------------------------------------------------------------AAGATGCAGTTATC--------------------------AAAG
i geoFor1.JH739942             I 3 I 15
s taeGut2.chrZ                  13216150 18 +  72861351 -------------------------------------------------------------------AAGATGCAGTTATC--------------------------AAAG
i taeGut2.chrZ                 I 3 I 15
s melUnd1.JH556568               2079007 44 +   4296882 -------------------------------------------------------------------aaaattcttttttcttgagagtaccacagaaaaagaaagggaag
i melUnd1.JH556568             I 807 I 15
s allMis1.JH737334                 61921 18 -    565068 -------------------------------------------------------------------AAGAGGATGTAATC--------------------------AAAG
i allMis1.JH737334             I 12 I 32
s cheMyd1.KB497515               3640171 24 +   9092468 ---------------------------------------------TGAAAG----------------GGAATGCAATCATC--------------------------AAGG
i cheMyd1.KB497515             C 0 C 0
s chrPic2.chrUn_KK082917v1      12456808 23 -  13974604 ---------------------------------------------CAAAAG----------------GGAAT-CAATCATC--------------------------AAGA
i chrPic2.chrUn_KK082917v1     C 0 C 0
s pelSin1.JH211373               2649091 17 -   4257854 --------------------------------------------------------------------GAACGCAATCATC--------------------------AAGG
i pelSin1.JH211373             C 0 C 0
e odoRosDiv1.KB229312             750185  2 -   2017862 I
e canFam3.chr16                 18192716  0 -  59632846 C
e felCat8.chrB1                 20474662 206 + 206538554 I
e oviAri3.chr26                 17845457 46 +  44077779 I
e bosTau8.chr27                 18218766 205 +  45407902 I
e panHod1.KE114653               1503331 46 -   2937107 I
e capHir1.chr27                 17930931 46 +  44118849 I
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.KE027501                  2856  0 +     16385 I
e astMex1.KB882082               3904961 703 -   8876373 T
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e anoCar2.chr3                 144852042  0 + 204416410 I
e pseHum1.KB221303                458855 896 -   1055857 I
e macEug2.GL108065                 83888 651 -    187545 T
e galGal4.chr4                  62358179  0 +  90216835 I
e melGal1.chr4                  45134349  0 +  74864452 I
e anaPla1.KB742960                138948 1155 +    531124 I
e amaVit1.KB267266                 44469  1 +     45143 I
e apaSpi1.KB929668               5961518 314 -  12308914 T
e equCab2.chr27                 18745073 63 -  39960074 I
e orcOrc1.KB316932               3016891  0 -  10937097 C
e rheMac3.chr8                  61650881 41461 + 150158102 I
e macFas5.chr8                  58323911 42259 + 146850525 I
e chlSab2.chr8                  53249873 36839 + 139301422 I
e panTro4.chr8                  54977249 47550 + 143986469 I

a score=-19579.000000
s hg38.chr8_KI270814v1_alt         71070  7 +    141812 C-----AAAC--------TT
s ponAbe2.chr8                  59040901  7 + 153482349 C-----AAAC--------TT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48114328  7 + 100215132 C-----AAAC--------TT
i nomLeu3.chr16                C 0 C 0
s calJac3.chr3                 190754906  7 - 190850796 T-----AAAC--------TT
i calJac3.chr3                 C 0 I 2
s saiBol1.JH378165              14118503  7 -  14256875 T-----AAAC--------TT
i saiBol1.JH378165             C 0 I 2
s monDom5.chr3                 315953642 12 - 527952102 TTCTGGACAT--------TT
i monDom5.chr3                 C 0 C 0
s sarHar1.chr2_GL841277_random    378072 12 -   1446407 TGCTGGTCAT--------TT
i sarHar1.chr2_GL841277_random C 0 C 0
s ornAna1.Contig22913               7691 15 +      9822 T-----AGACAAGGTCATTC
i ornAna1.Contig22913          C 0 C 0
s falChe1.KB398121               1473924  8 +   3546035 -----CACAT-------CTT
i falChe1.KB398121             I 15 C 0
s falPer1.KB390921               1611862  8 +   3698665 -----CACAT-------CTT
i falPer1.KB390921             I 15 C 0
s ficAlb2.chrZ                  55057057  7 +  59856998 -----CATAT--------TT
i ficAlb2.chrZ                 I 15 C 0
s zonAlb1.KB913240                787628  7 -    852449 -----CATAT--------TT
i zonAlb1.KB913240             I 15 C 0
s geoFor1.JH739942               1279537  7 +   5104860 -----CATAT--------TT
i geoFor1.JH739942             I 15 C 0
s taeGut2.chrZ                  13216183  7 +  72861351 -----CATAT--------TT
i taeGut2.chrZ                 I 15 C 0
s pseHum1.KB221303                459751  7 -   1055857 -----CATAT--------TT
i pseHum1.KB221303             I 896 C 0
s melUnd1.JH556568               2079066  7 +   4296882 -----AATTT--------CT
i melUnd1.JH556568             I 15 C 0
s cheMyd1.KB497515               3640195  7 +   9092468 -----CAAAT--------CT
i cheMyd1.KB497515             C 0 I 25
s chrPic2.chrUn_KK082917v1      12456831  7 -  13974604 -----CAAAT--------CT
i chrPic2.chrUn_KK082917v1     C 0 I 25
s pelSin1.JH211373               2649108  7 -   4257854 -----CAAAT--------CT
i pelSin1.JH211373             C 0 I 21
e odoRosDiv1.KB229312             750185  2 -   2017862 I
e canFam3.chr16                 18192716  0 -  59632846 C
e felCat8.chrB1                 20474662 206 + 206538554 I
e oviAri3.chr26                 17845457 46 +  44077779 I
e bosTau8.chr27                 18218766 205 +  45407902 I
e panHod1.KE114653               1503331 46 -   2937107 I
e capHir1.chr27                 17930931 46 +  44118849 I
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.KE027501                  2856  0 +     16385 I
e astMex1.KB882082               3904961 703 -   8876373 T
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e anoCar2.chr3                 144852042  0 + 204416410 I
e colLiv1.KB375452               1390100 35 +   4234233 I
e allMis1.JH737334                 61939 32 -    565068 I
e macEug2.GL108065                 83888 651 -    187545 T
e galGal4.chr4                  62358179  0 +  90216835 I
e melGal1.chr4                  45134349  0 +  74864452 I
e anaPla1.KB742960                138948 1155 +    531124 I
e amaVit1.KB267266                 44469  1 +     45143 I
e apaSpi1.KB929668               5961518 314 -  12308914 T
e equCab2.chr27                 18745073 63 -  39960074 I
e orcOrc1.KB316932               3016891  0 -  10937097 C
e rheMac3.chr8                  61650881 41461 + 150158102 I
e macFas5.chr8                  58323911 42259 + 146850525 I
e chlSab2.chr8                  53249873 36839 + 139301422 I
e panTro4.chr8                  54977249 47550 + 143986469 I

a score=-278839.000000
s hg38.chr8_KI270814v1_alt         71077 46 +    141812 ----------------------TGGT-----------------ATT---TGTA-------------ATT----TTGAAGTTACATACTT------TTGAA------ATAAACTTGGG
s ponAbe2.chr8                  59040908 46 + 153482349 ----------------------TGGT-----------------ATT---TGTA-------------ATT----TTGAAGTTACATACTT------TTGAA------ATAAACTTGGG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48114335 46 + 100215132 ----------------------TGGT-----------------ATT---TGTA-------------ATT----TTGAAGTTATATACTT------TTGAA------ATAAACCTGAG
i nomLeu3.chr16                C 0 C 0
s calJac3.chr3                 190754915 45 - 190850796 ----------------------TAGT-----------------ATT---TGCT-------------ATT----TTGAAGCTATATA-TT------TTGGA------ATAAACTTGGG
i calJac3.chr3                 I 2 C 0
s saiBol1.JH378165              14118512 44 -  14256875 ----------------------TAGT-----------------ATT---TGTT--------------TT----TTGAAGCTATATA-TT------TTGGA------ATAAACTTGGT
i saiBol1.JH378165             I 2 C 0
s monDom5.chr3                 315953654 68 - 527952102 ----------------------TGGTGGGTTTTAATCGCTCATTTT---TATC-------------AAT----TTGTATTTGTTTA-TTTAATCATTAAA------AAAAGCCAAAC
i monDom5.chr3                 C 0 C 0
s sarHar1.chr2_GL841277_random    378084 73 -   1446407 ----------------------TGGTGagttttgtttgctca-ttt---gatc-------------aat----ttgtatttgttta-ttaaaaagacaaacaaaccaaaaaccaaaa
i sarHar1.chr2_GL841277_random C 0 I 1
s ornAna1.Contig22913               7706 54 +      9822 ----------------------TGAT-----------------ATT---CTTACCCAGTTGCCTAAATT----CTGAGAACCGCTG-TT------TAGCA------AAAAAGC----
i ornAna1.Contig22913          C 0 C 0
s colLiv1.KB375452               1390135 30 +   4234233 ---------------------CTGAT-----------------CTT---GCTC-------------AGT----TTAGTTATACTTC-TA----------------------------
i colLiv1.KB375452             I 35 C 0
s falChe1.KB398121               1473932 49 +   3546035 AAGTACAGCTGGTAAA---CATTGAT-----------------CTT---GCCC-------------AGT---CTTAATTATACTTC-TA----------------------------
i falChe1.KB398121             C 0 C 0
s falPer1.KB390921               1611870 49 +   3698665 AAGTACAGCTGGTAAA---CATTGAT-----------------CTT---GCCC-------------AGT---CTTAATTATACTTC-TA----------------------------
i falPer1.KB390921             C 0 C 0
s ficAlb2.chrZ                  55057064 47 +  59856998 AAGTATGGCTGGT-AA---CACTGAT-----------------CTT---TCCT-------------ACT----TTAATTATACTTC-TA----------------------------
i ficAlb2.chrZ                 C 0 C 0
s zonAlb1.KB913240                787635 47 -    852449 AAGTATGGCTGGT-AA---CACTGat-----------------ctt---tctc-------------att----ttaattaCACTTC-TA----------------------------
i zonAlb1.KB913240             C 0 C 0
s geoFor1.JH739942               1279544 47 +   5104860 GAGTTTGGCTGGT-AA---CACTGAT-----------------ATT---ACTT-------------GCT----TTAGTTACACTTC-TA----------------------------
i geoFor1.JH739942             C 0 C 0
s taeGut2.chrZ                  13216190 47 +  72861351 AGGTACGGCTGGT-AA---CATGGAT-----------------CTT---TCTC-------------ACT----TTAATTACACTTG-TA----------------------------
i taeGut2.chrZ                 C 0 C 0
s pseHum1.KB221303                459758 47 -   1055857 AAGTATGGCTGGT-AA---CACTGAT-----------------CTT---CCCC-------------ACT----TTAATTATACTTC-TA----------------------------
i pseHum1.KB221303             C 0 C 0
s melUnd1.JH556568               2079073 47 +   4296882 GAGTATGGCTGGT-AA---CACTGAT-----------------CTT---GCCC-------------AGT----TTAATTATACATC-TA----------------------------
i melUnd1.JH556568             C 0 C 0
s allMis1.JH737334                 61971 46 -    565068 --------CTAGT-AACTGCAGTAGT-----------------CCA---GTTC-------------AGTTAGTTTCATTATTCTGC-TT----------------------------
i allMis1.JH737334             I 32 C 0
s cheMyd1.KB497515               3640227 41 +   9092468 ---------TGGT-AA---TTTTGAT-----------------ATTCTGGCCC-------------AGT----TTCGTTTTTCTGA-Ga----------------------------
i cheMyd1.KB497515             I 25 C 0
s chrPic2.chrUn_KK082917v1      12456863 39 -  13974604 ---------TGGT-AA---TTTTGAT-----------------ATTCTGTCC---------------AT----TTCGTTTTTCTGA-GA----------------------------
i chrPic2.chrUn_KK082917v1     I 25 C 0
s pelSin1.JH211373               2649136 41 -   4257854 ---------TGGT-AA---TTTTGGT-----------------TTTCTGGCTA-------------AGT----TTCGCTTTTCTGA-CA----------------------------
i pelSin1.JH211373             I 21 C 0
s apaSpi1.KB928558               3294457 41 -   3719163 ---------TGGT-AA---TTTTGGT-----------------TTTCTGGCTA-------------AGT----TTCGCTTTTCTGA-CA----------------------------
i apaSpi1.KB928558             n 314 C 0
e odoRosDiv1.KB229312             750185  2 -   2017862 I
e canFam3.chr16                 18192716  0 -  59632846 C
e felCat8.chrB1                 20474662 206 + 206538554 I
e oviAri3.chr26                 17845457 46 +  44077779 I
e bosTau8.chr27                 18218766 205 +  45407902 I
e panHod1.KE114653               1503331 46 -   2937107 I
e capHir1.chr27                 17930931 46 +  44118849 I
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.KE027501                  2856  0 +     16385 I
e astMex1.KB882082               3904961 703 -   8876373 T
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e anoCar2.chr3                 144852042  0 + 204416410 I
e macEug2.GL108065                 83888 651 -    187545 T
e galGal4.chr4                  62358179  0 +  90216835 I
e melGal1.chr4                  45134349  0 +  74864452 I
e anaPla1.KB742960                138948 1155 +    531124 I
e amaVit1.KB267266                 44469  1 +     45143 I
e equCab2.chr27                 18745073 63 -  39960074 I
e orcOrc1.KB316932               3016891  0 -  10937097 C
e rheMac3.chr8                  61650881 41461 + 150158102 I
e macFas5.chr8                  58323911 42259 + 146850525 I
e chlSab2.chr8                  53249873 36839 + 139301422 I
e panTro4.chr8                  54977249 47550 + 143986469 I

a score=-9656.000000
s hg38.chr8_KI270814v1_alt         71123 20 +    141812 CTT--TCA---------TGCCATGTTGGGTT
s ponAbe2.chr8                  59040954 20 + 153482349 CTT--TCA---------TGCCATGTTGGGTT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48114381 20 + 100215132 CTT--TCA---------TGCCACGTTGGGTT
i nomLeu3.chr16                C 0 C 0
s calJac3.chr3                 190754960 19 - 190850796 A-T--TTA---------TGCCATTTCAGGCT
i calJac3.chr3                 C 0 C 0
s saiBol1.JH378165              14118556 20 -  14256875 ATT--TTA---------TGCCATTTCAGGCT
i saiBol1.JH378165             C 0 C 0
s monDom5.chr3                 315953722 17 - 527952102 --C--TCA---------AGC-CTGCCAAACC
i monDom5.chr3                 C 0 C 0
s sarHar1.chr2_GL841277_random    378158 20 -   1446407 ccc--tcA---------CTCCCTGTCAAACT
i sarHar1.chr2_GL841277_random I 1 C 0
s macEug2.GL053575                 10294 20 +     74274 CCC--TCA---------TGCTCTATCAAACT
i macEug2.GL053575             n 651 C 0
s ornAna1.Contig22913               7760 20 +      9822 ACT--TCA---------TCTTCTCTGGAGGT
i ornAna1.Contig22913          C 0 C 0
s colLiv1.KB375452               1390165 28 +   4234233 GTC--TTA-CCTATTTTTACAGTATCATAAA
i colLiv1.KB375452             C 0 I 3
s falChe1.KB398121               1473981 27 +   3546035 GTC--TTA--CTATTTTTACAGTATCATAAA
i falChe1.KB398121             C 0 I 3
s falPer1.KB390921               1611919 27 +   3698665 GTC--TTA--CTATTTTTACAGTATCATAAA
i falPer1.KB390921             C 0 I 3
s ficAlb2.chrZ                  55057111 20 +  59856998 ATC--TTA---------TACAGTATCATAAA
i ficAlb2.chrZ                 C 0 I 3
s zonAlb1.KB913240                787682 20 -    852449 ATC--TTG---------TACAGTATCATAAA
i zonAlb1.KB913240             C 0 I 3
s geoFor1.JH739942               1279591 20 +   5104860 AAC--TTG---------TACAGCATCATAAA
i geoFor1.JH739942             C 0 I 3
s taeGut2.chrZ                  13216237 20 +  72861351 ATC--TTG---------TACAGTATCATAAA
i taeGut2.chrZ                 C 0 I 3
s pseHum1.KB221303                459805 20 -   1055857 ATC--TTG---------TACAGTATCATAAA
i pseHum1.KB221303             C 0 I 3
s melUnd1.JH556568               2079120 27 +   4296882 GCT--TTA--CTATTCTTACAGTATCATAAA
i melUnd1.JH556568             C 0 I 3
s allMis1.JH737334                 62017 23 -    565068 ATC--TTTTTTTGTCCTTATAATTT------
i allMis1.JH737334             C 0 C 0
s cheMyd1.KB497515               3640268 28 +   9092468 atctttta--ttgttt-tacaatTTTGTAAA
i cheMyd1.KB497515             C 0 I 3
s chrPic2.chrUn_KK082917v1      12456902 28 -  13974604 atctttta--ttgttt-tacaaTTTTGTAAA
i chrPic2.chrUn_KK082917v1     C 0 I 3
s pelSin1.JH211373               2649177 26 -   4257854 ATC--TTA--CTGTTT-TACAATTTTGCAAA
i pelSin1.JH211373             C 0 I 3
s apaSpi1.KB928558               3294498 26 -   3719163 ATC--TTA--CTGTTT-TACAATTTTGCAAA
i apaSpi1.KB928558             C 0 I 3
e odoRosDiv1.KB229312             750185  2 -   2017862 I
e canFam3.chr16                 18192716  0 -  59632846 C
e felCat8.chrB1                 20474662 206 + 206538554 I
e oviAri3.chr26                 17845457 46 +  44077779 I
e bosTau8.chr27                 18218766 205 +  45407902 I
e panHod1.KE114653               1503331 46 -   2937107 I
e capHir1.chr27                 17930931 46 +  44118849 I
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.KE027501                  2856  0 +     16385 I
e astMex1.KB882082               3904961 703 -   8876373 T
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e anoCar2.chr3                 144852042  0 + 204416410 I
e galGal4.chr4                  62358179  0 +  90216835 I
e melGal1.chr4                  45134349  0 +  74864452 I
e anaPla1.KB742960                138948 1155 +    531124 I
e amaVit1.KB267266                 44469  1 +     45143 I
e equCab2.chr27                 18745073 63 -  39960074 I
e orcOrc1.KB316932               3016891  0 -  10937097 C
e rheMac3.chr8                  61650881 41461 + 150158102 I
e macFas5.chr8                  58323911 42259 + 146850525 I
e chlSab2.chr8                  53249873 36839 + 139301422 I
e panTro4.chr8                  54977249 47550 + 143986469 I

a score=228306.000000
s hg38.chr8_KI270814v1_alt         71143 43 +    141812 TGAGGAAG------ATAGCAAAT-----GTATA--AAT-TGAGC--TCTCTA---GTCATAA
s ponAbe2.chr8                  59040974 43 + 153482349 TGAGGAAG------ATAGCAAAT-----GTATA--AAT-TGAGC--TCTCTA---GTCATAA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48114401 43 + 100215132 TGAGGAAG------ATAGCAAAT-----GTATA--AAT-TGAGC--TCTCTA---GTCATAA
i nomLeu3.chr16                C 0 C 0
s calJac3.chr3                 190754979 43 - 190850796 TGAGCAAG------AGAGCAGAT-----GTATA--AAT-TGAGC--TCTCTA---ATCGTGA
i calJac3.chr3                 C 0 C 0
s saiBol1.JH378165              14118576 43 -  14256875 TGAGCAAG------TTAGCAAAT-----GTATA--AAT-TGAGC--TCTCTA---ATCATAA
i saiBol1.JH378165             C 0 C 0
s monDom5.chr3                 315953739 43 - 527952102 TCAACAGA------CCATAATGTGCATGGT-------C-TGAGC--CCTGTT---AGCATAA
i monDom5.chr3                 C 0 C 0
s sarHar1.chr2_GL841277_random    378178 48 -   1446407 TCAACAGA------CCATAACACAAACAGTATA--AAT-TGAGC--CCTTTT---GGCATAA
i sarHar1.chr2_GL841277_random C 0 C 0
s macEug2.GL053575                 10314 48 +     74274 TCAACAGA------CCAAAAAGTAAATAGTATA--AAC-TGAGC--CCTTGC---AGCATAA
i macEug2.GL053575             C 0 C 0
s ornAna1.Contig22913               7780 41 +      9822 AGCAGAAT------ATAAAGCAT-----GTACA--AAC-CGTGT--CCTCTA---ACCAT--
i ornAna1.Contig22913          C 0 I 3
s colLiv1.KB375452               1390196 36 +   4234233 TGAAGATA------ATACAAAGT-----GCACA--AAC-TGAGC--TCTTGG----------
i colLiv1.KB375452             I 3 I 11
s falChe1.KB398121               1474011 36 +   3546035 TGAAGATA------ATACAAAGT-----GCACA--AAC-TGAGC--TCTTAG----------
i falChe1.KB398121             I 3 I 11
s falPer1.KB390921               1611949 36 +   3698665 TGAAGATA------ATACAAAGT-----GCACA--AAC-TGAGC--TCTTAG----------
i falPer1.KB390921             I 3 I 11
s ficAlb2.chrZ                  55057134 36 +  59856998 TGAAGGCA------ATACAAAGT-----GCACA--AAT-TGAGC--TCTTAG----------
i ficAlb2.chrZ                 I 3 C 0
s zonAlb1.KB913240                787705 36 -    852449 TGAAGGTA------ATACAAAGT-----GCACA--AAC-TGAGC--TCTTAG----------
i zonAlb1.KB913240             I 3 C 0
s geoFor1.JH739942               1279614 36 +   5104860 TAAAGGTA------ATACAAAGC-----GCACA--AAC-TGAGC--TCTTAG----------
i geoFor1.JH739942             I 3 C 0
s taeGut2.chrZ                  13216260 36 +  72861351 TGAAGGTA------ATACAAAGT-----GCACA--AAC-TGAGC--TCTTAG----------
i taeGut2.chrZ                 I 3 C 0
s pseHum1.KB221303                459828 34 -   1055857 TGAAGGTA--------ACGAAGT-----GTACA--AAC-TGAGC--TCTTAG----------
i pseHum1.KB221303             I 3 I 17
s melUnd1.JH556568               2079150 36 +   4296882 TGAAGATA------ATACAAAGT-----GCACA--AAC-TGAGC--TCTCAG----------
i melUnd1.JH556568             I 3 I 11
s anaPla1.KB742960                140103 36 +    531124 TGAAGATA------ATACAAAGT-----GCACA--AAC-TGAGC--TCTTAG----------
i anaPla1.KB742960             I 1155 I 11
s galGal4.chrZ                  23194588 36 -  82363669 TGAAGATA------ATACAAAGT-----GCACA--AAC-TGAGC--TCTTAG----------
i galGal4.chrZ                 I 1096 I 11
s melGal1.chrZ                  62955363 36 +  81011772 TGAAGATA------ATACAAAGT-----GCACA--AAC-TGAGC--TCTTAG----------
i melGal1.chrZ                 n 0 I 11
s allMis1.JH737334                 62040 35 -    565068 TGTA---A------ACACAAAAT-----GCACA--GAC-TAAACTTTCTTAC----------
i allMis1.JH737334             C 0 I 5
s cheMyd1.KB497515               3640299 50 +   9092468 TGAAGataaacacaatacaaagt-----gcacaAAAAACTGAGCCATTTCACCAA-------
i cheMyd1.KB497515             I 3 C 0
s chrPic2.chrUn_KK082917v1      12456933 47 -  13974604 TGAAGatcaacacaatacaaagt-----gcacaAAAAC---AGCCATCTCACCAA-------
i chrPic2.chrUn_KK082917v1     I 3 C 0
s pelSin1.JH211373               2649206 46 -   4257854 TGAAGATA---ACTATACATAGT-----GCACAGTAAC-TGAGCCATCTCACCAA-------
i pelSin1.JH211373             I 3 C 0
s apaSpi1.KB928558               3294527 46 -   3719163 TGAAGAAA---ACCATATATAGT-----GCACAGTAAC-TGAGCCATCTCACCAA-------
i apaSpi1.KB928558             I 3 C 0
e odoRosDiv1.KB229312             750185  2 -   2017862 I
e canFam3.chr16                 18192716  0 -  59632846 C
e felCat8.chrB1                 20474662 206 + 206538554 I
e oviAri3.chr26                 17845457 46 +  44077779 I
e bosTau8.chr27                 18218766 205 +  45407902 I
e panHod1.KE114653               1503331 46 -   2937107 I
e capHir1.chr27                 17930931 46 +  44118849 I
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.KE027501                  2856  0 +     16385 I
e astMex1.KB882082               3904961 703 -   8876373 T
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e anoCar2.chr3                 144852042  0 + 204416410 I
e amaVit1.KB267266                 44469  1 +     45143 I
e equCab2.chr27                 18745073 63 -  39960074 I
e orcOrc1.KB316932               3016891  0 -  10937097 C
e rheMac3.chr8                  61650881 41461 + 150158102 I
e macFas5.chr8                  58323911 42259 + 146850525 I
e chlSab2.chr8                  53249873 36839 + 139301422 I
e panTro4.chr8                  54977249 47550 + 143986469 I

a score=-20499.000000
s hg38.chr8_KI270814v1_alt         71186 19 +    141812 CCTTGCT-------A-TATGTATTCCT
s nomLeu3.chr16                 48114444 19 + 100215132 CCTTGCT-------A-TATGTATTCCT
i nomLeu3.chr16                C 0 C 0
s calJac3.chr3                 190755022 19 - 190850796 TCTCAAT-------A-TATGAATTCTT
i calJac3.chr3                 C 0 C 0
s saiBol1.JH378165              14118619 19 -  14256875 TCTCAAT-------A-TATGAATTCTT
i saiBol1.JH378165             C 0 C 0
s monDom5.chr3                 315953782 12 - 527952102 ---CAGT-------A-T----TTTCTT
i monDom5.chr3                 C 0 C 0
s sarHar1.chr2_GL841277_random    378226 12 -   1446407 ---CAGC-------A-T----TTTctt
i sarHar1.chr2_GL841277_random C 0 C 0
s macEug2.GL053575                 10362 12 +     74274 ---TAAT-------A-T----TTTCTT
i macEug2.GL053575             C 0 C 0
s ornAna1.Contig22913               7824 14 +      9822 CCCCATT-------A-T-----TTCTT
i ornAna1.Contig22913          I 3 C 0
s colLiv1.KB375452               1390243  8 +   4234233 --------------C-T----TTTCCT
i colLiv1.KB375452             I 11 C 0
s falChe1.KB398121               1474058  8 +   3546035 --------------C-T----TTTCCT
i falChe1.KB398121             I 11 C 0
s falPer1.KB390921               1611996  8 +   3698665 --------------C-T----TTTCCT
i falPer1.KB390921             I 11 C 0
s ficAlb2.chrZ                  55057170 19 +  59856998 ---CATAGAAgaagc-t----tttcct
i ficAlb2.chrZ                 C 0 C 0
s zonAlb1.KB913240                787741 19 -    852449 ---CATAAAAGAAGC-T----TTTCCC
i zonAlb1.KB913240             C 0 C 0
s geoFor1.JH739942               1279650 19 +   5104860 ---CATAAaagaagc-t----tttcct
i geoFor1.JH739942             C 0 C 0
s taeGut2.chrZ                  13216296 20 +  72861351 ---CATAAAAGCAGCTT----TTTCCT
i taeGut2.chrZ                 C 0 C 0
s melUnd1.JH556568               2079197  8 +   4296882 --------------c-t----tttcct
i melUnd1.JH556568             I 11 C 0
s anaPla1.KB742960                140150  8 +    531124 --------------C-T----TTTCCT
i anaPla1.KB742960             I 11 C 0
s galGal4.chrZ                  23194635  8 -  82363669 --------------C-T----TTTCCT
i galGal4.chrZ                 I 11 C 0
s melGal1.chrZ                  62955410  8 +  81011772 --------------C-T----TTTCCT
i melGal1.chrZ                 I 11 C 0
s allMis1.JH737334                 62080 16 -    565068 ---CCTTAACCA--C-T----TTTTT-
i allMis1.JH737334             I 5 C 0
s cheMyd1.KB497515               3640349 15 +   9092468 CCCTATA-------C-T----CTTCTT
i cheMyd1.KB497515             C 0 C 0
s chrPic2.chrUn_KK082917v1      12456980 15 -  13974604 CCCTATA-------C-T----CTTCTT
i chrPic2.chrUn_KK082917v1     C 0 C 0
s pelSin1.JH211373               2649252 15 -   4257854 CCCCATA-------C-T----CTTCTT
i pelSin1.JH211373             C 0 C 0
s apaSpi1.KB928558               3294573 15 -   3719163 CCCCATA-------C-T----CTTCTT
i apaSpi1.KB928558             C 0 C 0
e odoRosDiv1.KB229312             750185  2 -   2017862 I
e canFam3.chr16                 18192716  0 -  59632846 C
e felCat8.chrB1                 20474662 206 + 206538554 I
e oviAri3.chr26                 17845457 46 +  44077779 I
e bosTau8.chr27                 18218766 205 +  45407902 I
e panHod1.KE114653               1503331 46 -   2937107 I
e capHir1.chr27                 17930931 46 +  44118849 I
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.KE027501                  2856  0 +     16385 I
e astMex1.KB882082               3904961 703 -   8876373 T
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e anoCar2.chr3                 144852042  0 + 204416410 I
e pseHum1.KB221303                459862 17 -   1055857 I
e amaVit1.KB267266                 44469  1 +     45143 I
e equCab2.chr27                 18745073 63 -  39960074 I
e orcOrc1.KB316932               3016891  0 -  10937097 C
e rheMac3.chr8                  61650881 41461 + 150158102 I
e macFas5.chr8                  58323911 42259 + 146850525 I
e chlSab2.chr8                  53249873 36839 + 139301422 I
e ponAbe2.chr8                  59041017  0 + 153482349 C
e panTro4.chr8                  54977249 47550 + 143986469 I

a score=-24076.000000
s hg38.chr8_KI270814v1_alt         71205 5 +    141812 --GCTCA
s nomLeu3.chr16                 48114463 5 + 100215132 --GCTCA
i nomLeu3.chr16                C 0 C 0
s calJac3.chr3                 190755041 5 - 190850796 --GCTAA
i calJac3.chr3                 C 0 C 0
s saiBol1.JH378165              14118638 5 -  14256875 --GCTAA
i saiBol1.JH378165             C 0 C 0
s monDom5.chr3                 315953794 5 - 527952102 --GCACT
i monDom5.chr3                 C 0 C 0
s sarHar1.chr2_GL841277_random    378238 5 -   1446407 --gcact
i sarHar1.chr2_GL841277_random C 0 C 0
s macEug2.GL053575                 10374 5 +     74274 --GTGAT
i macEug2.GL053575             C 0 C 0
s ornAna1.Contig22913               7838 5 +      9822 --GCCCT
i ornAna1.Contig22913          C 0 C 0
s colLiv1.KB375452               1390251 3 +   4234233 --GCA--
i colLiv1.KB375452             C 0 I 2
s falChe1.KB398121               1474066 3 +   3546035 --GCA--
i falChe1.KB398121             C 0 I 2
s falPer1.KB390921               1612004 3 +   3698665 --GCA--
i falPer1.KB390921             C 0 I 2
s ficAlb2.chrZ                  55057189 3 +  59856998 --gca--
i ficAlb2.chrZ                 C 0 I 2
s zonAlb1.KB913240                787760 3 -    852449 --GCT--
i zonAlb1.KB913240             C 0 I 2
s geoFor1.JH739942               1279669 3 +   5104860 --gca--
i geoFor1.JH739942             C 0 I 2
s taeGut2.chrZ                  13216316 3 +  72861351 --GCA--
i taeGut2.chrZ                 C 0 I 2
s melUnd1.JH556568               2079205 3 +   4296882 --gca--
i melUnd1.JH556568             C 0 I 2
s anaPla1.KB742960                140158 3 +    531124 --GCA--
i anaPla1.KB742960             C 0 I 3
s galGal4.chrZ                  23194643 3 -  82363669 --GCA--
i galGal4.chrZ                 C 0 I 4
s melGal1.chrZ                  62955418 3 +  81011772 --GCA--
i melGal1.chrZ                 C 0 I 4
s cheMyd1.KB497515               3640364 3 +   9092468 --Gca--
i cheMyd1.KB497515             C 0 I 2
s chrPic2.chrUn_KK082917v1      12456995 3 -  13974604 --GCA--
i chrPic2.chrUn_KK082917v1     C 0 I 2
s pelSin1.JH211373               2649267 3 -   4257854 --CCA--
i pelSin1.JH211373             C 0 I 2
s apaSpi1.KB928558               3294588 3 -   3719163 --CCA--
i apaSpi1.KB928558             C 0 I 2
s anoCar2.chr2                  23371801 5 + 199619895 GATCA--
i anoCar2.chr2                 n 0 C 0
e odoRosDiv1.KB229312             750185 2 -   2017862 I
e canFam3.chr16                 18192716 0 -  59632846 C
e felCat8.chrB1                 20474662 206 + 206538554 I
e oviAri3.chr26                 17845457 46 +  44077779 I
e bosTau8.chr27                 18218766 205 +  45407902 I
e panHod1.KE114653               1503331 46 -   2937107 I
e capHir1.chr27                 17930931 46 +  44118849 I
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.KE027501                  2856 0 +     16385 I
e astMex1.KB882082               3904961 703 -   8876373 T
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e pseHum1.KB221303                459862 17 -   1055857 I
e allMis1.JH737334                 62096 0 -    565068 C
e amaVit1.KB267266                 44469 1 +     45143 I
e equCab2.chr27                 18745073 63 -  39960074 I
e orcOrc1.KB316932               3016891 0 -  10937097 C
e rheMac3.chr8                  61650881 41461 + 150158102 I
e macFas5.chr8                  58323911 42259 + 146850525 I
e chlSab2.chr8                  53249873 36839 + 139301422 I
e ponAbe2.chr8                  59041017 0 + 153482349 C
e panTro4.chr8                  54977249 47550 + 143986469 I

a score=816855.000000
s hg38.chr8_KI270814v1_alt         71210 111 +    141812 TT----AAA-ATACTT-TGCGCCAG---------CAAAAATGATT---TCCAACAT------ATGTGTTTTGGATGTAATTAAGT--AACTGTATA--AAACTAAGTATG-TTTTTTCTCCTTTCCCCAGT-----------GACTGGAAA
s nomLeu3.chr16                 48114468 111 + 100215132 TT----AAA-ATACTT-TGCGCCAG---------CAAAAATGATT---ACCAACAT------ATATGTTTTGGATGTAATTAAGT--AACTGTATA--AAACTAAGTATG-TTTTTTCTCCTTTCCCCAGT-----------GACTGGAAA
i nomLeu3.chr16                C 0 C 0
s calJac3.chr3                 190755046 113 - 190850796 TT----AAA-ATACTC-TGCATCAG---------CAAAAACAATT---TTC-ACAT------ATGTGTTTAGGAGGGGATTAAGT--GACTGTATATGAAAATAATTACACATTCCCCTCCTTTCTTCAGT-----------GACTAGAAA
i calJac3.chr3                 C 0 C 0
s saiBol1.JH378165              14118643 113 -  14256875 TT----AAA-ATACTC-TGCATCAG---------CAAAAACTATT---TTC-ACAT------ATGTGTTTAGGAGGTAATTAAGT--GACTGTATATGAAAATAATTACACTTTCCCCTCCTTTCTTCAGT-----------GACTAGAAA
i saiBol1.JH378165             C 0 C 0
s monDom5.chr3                 315953799 113 - 527952102 TTTTAAAAT-ATACTT-TCTACCAAAG-----ACTTACAAC-----------ATAT------ATTCATTTTTT-GGTGATTCAGT--TACTATGTATAAAAATAAATTTACTTTCCCTTCCTATCCCTAGT-----------GGCTGCGAT
i monDom5.chr3                 C 0 C 0
s sarHar1.chr2_GL841277_random    378243 116 -   1446407 ttttaaaaatatactt-tctaCCAGAG-------CAAAGACcgta-------atat------atgtatttttt-ggtGATTTAgt--taatttgtataaaaataaatttgctttcCCTTCCTATTCCTGGT-----------GGCTGAGAA
i sarHar1.chr2_GL841277_random C 0 C 0
s macEug2.GL053575                 10379 113 +     74274 TTTCAAAAG-AGACTT-TCTACCAAAG-----ATTTAAAAC-----------ATAT------ATGCATTTTTT-GGTGATTCGGT--TTCTACGTATAAAAATAAATTGACTTTCCCTTCCTACCCCTAGT-----------GGCTGAGAT
i macEug2.GL053575             C 0 C 0
s ornAna1.Contig22913               7843 105 +      9822 GT--AGAAT-ATTCTT-TCTGCCAGAGCACAGGCTCACAAT-----------ATAT------ATGTCTTTTTT-GGTTCTTAA------CTATATATAAAAATAAATTGACTTTCCCCTCCT------GGT-----------GGCTGAGG-
i ornAna1.Contig22913          C 0 C 0
s colLiv1.KB375452               1390256 108 +   4234233 --TTGAAGT-ATACTT-TCTACTAG-----------AGACTCATT-------ACAT------ATAGAATTTTT-GGTGATTAGGT--AactacatataaaaataaatgtgctttcccttcccatccctaGT-----------ACTTGAGA-
i colLiv1.KB375452             I 2 I 1
s falChe1.KB398121               1474071 103 +   3546035 --TTGAAAT-ATACTT-TCTACTAG-----------AGACTCATT-------ACAT------ATAGAGTTTTT-GGTGA-----t--aactatatataaaaataaatgtattttcccttcccatccctACT-----------ACTTGAGA-
i falChe1.KB398121             I 2 C 0
s falPer1.KB390921               1612009 103 +   3698665 --TTGAAAT-ATACTT-TCTACTAG-----------AGACTCATT-------ACAT------ATAGAGTTTTT-GGTGA-----t--aactatatataaaaatatatttattttcccttcccatccctACT-----------ACTTGAGA-
i falPer1.KB390921             I 2 C 0
s ficAlb2.chrZ                  55057194  90 +  59856998 --ttgaAAT-ATACTT-TCTACT-------------ACACTCATC-------ACAT------ATAGAATTTTT-GGTGATTAAGT--AgctatatataaaaataaatttactctCCCTTCCTA----------------------------
i ficAlb2.chrZ                 I 2 I 9
s zonAlb1.KB913240                787765 106 -    852449 --TTGAAAT-ATACTT-TCTTCT-------------AGACTCATC-------ACAT------ATAGAATTTTT-GGTGATTAAGT--AgctatatataaaaataaattcactttcCCTTCCTATCCCTACT-----------ACTTGAGA-
i zonAlb1.KB913240             I 2 I 52
s geoFor1.JH739942               1279674 106 +   5104860 --ttgaAAT-ATACTT-TCTACT-------------ACACTCATC-------ACAT------ATAGAATTTTT-GGTGATTAAGT--AgctatatataaaaataaatttgctttccCTTCCTATCCCTACT-----------ACTTGAGA-
i geoFor1.JH739942             I 2 I 76
s taeGut2.chrZ                  13216321 106 +  72861351 --TTGAAAT-ATACTT-TCTATT-------------ACACCCATC-------ACAT------ATAGAATTTTT-GGTGATTAAGT--AGCTATATATAAAAATAAATTTACTTTCCCTTCCTATCCCTACC-----------ACTTGAAG-
i taeGut2.chrZ                 I 2 I 11
s pseHum1.KB221303                459879 101 -   1055857 --TTGAAAT-ATATAC-TCTACT-------------AGACTCATC-----------------ATAGAATTTTT-GGTGATTAAGT--agctatatataaaaataaatttactttccCTTCCTATCCCTACT-----------ATGGGAG--
i pseHum1.KB221303             I 17 I 12
s melUnd1.JH556568               2079210 108 +   4296882 --ttgAAAT-ATACCT-CCTACTAA-----------AGACTCATT-------ACAT------ATAGAATTTTT-GGTGATTAGAT--aactatatataaaaataaatttactttcccttcccatccctaCT-----------ACTTGAGA-
i melUnd1.JH556568             I 2 I 11
s anaPla1.KB742960                140164 106 +    531124 ----GAAAT-ATACTT-TCTACTAG-----------AGCCTCATT-------ATAT------ATAGAATTTTT-GGTGATTAGGT--AactatgtataaaaataaatttactttcccttcccatccctaCT-----------AGTTGAAG-
i anaPla1.KB742960             I 3 I 1
s galGal4.chrZ                  23194650 106 -  82363669 ----GAAAT-ATACTT-GCTACTAG-----------AGACTCATA-------ATAT------ATAGTATTTTT-GGTGATTAGGT--AactatgtaaaaaaataaatttactttcTCTTCCCATCTCTACT-----------AGTTGAAA-
i galGal4.chrZ                 I 4 I 1
s melGal1.chrZ                  62955425 106 +  81011772 ----GAAAT-ATACTT-GCTACTAG-----------AGACTCATA-------ATAT------ATAGTATTTTT-GGTGATTAGGT--AACTATGTATAAAAATAAATTTACTTTCTCTTCCCATCTCTACT-----------AGTTGAAA-
i melGal1.chrZ                 I 4 I 1
s allMis1.JH737334                 62096 125 -    565068 ---TTAAat-atactt-tgtactag----------tatactatctctatgt-atgt------ataGAATTTCT-GGTGATTAAGT--TGCTATGTATAAAAATAAACTCACTTTCCCACCTCAACCCTATTTATGGGATGAGAATGGAAA-
i allMis1.JH737334             C 0 C 0
s cheMyd1.KB497515               3640369 110 +   9092468 --ttaaaat-atacttttagaCTAG-----------AAATTCACT-------ATAT--ATGTATAGATT---T-GGTGATTAAGT--AactatgtataaaaataaattcaatttCCCTTTCCACCCTCACT-----------GGTTGAGA-
i cheMyd1.KB497515             I 2 I 1
s chrPic2.chrUn_KK082917v1      12457000 110 -  13974604 --TTAAAAT-ATACGTTTGGACTAG-----------AAACTCACT-------ATAT--ATGTATAGATT---T-GGTGATTAAGT--AActatgtataaaaataaattcaatttcCCTTTCCACCCTCCCT-----------CGTTGAGA-
i chrPic2.chrUn_KK082917v1     I 2 I 1
s pelSin1.JH211373               2649272 103 -   4257854 --T-----C-atactt------taa-----------agacttaca-------ataTAGGCGTCTAGAAT---T-GGTGATTAAGTAAAACCATGTATAAAAATAAACGCAATTTCCCTTTCCGCTCCCATG-----------GGCTGAGA-
i pelSin1.JH211373             I 2 I 1
s apaSpi1.KB928558               3294593 106 -   3719163 --T-----C-ATACTT-TAGAGTAG-----------AGACTTACA-------ATATGGATGTCGAGAAT---T-GGTGATTAAGT--AACCATGTATAAAAATAAACGCAATTTCCTTTTCCGCTCCCATG-----------GGCTGAGA-
i apaSpi1.KB928558             I 2 I 1
s anoCar2.chr2                  23371806  84 + 199619895 ------------------CTACA-------------ATATTCCAT-------GCAA------GCAAG-----T-GGTTATAGGAT--Acctatgtaaaaaaataaattcatttttcc---CTATCCACCTT-----------AATTGCAA-
i anoCar2.chr2                 C 0 I 1
e odoRosDiv1.KB229312             750185   2 -   2017862 I
e canFam3.chr16                 18192716   0 -  59632846 C
e felCat8.chrB1                 20474662 206 + 206538554 I
e oviAri3.chr26                 17845457  46 +  44077779 I
e bosTau8.chr27                 18218766 205 +  45407902 I
e panHod1.KE114653               1503331  46 -   2937107 I
e capHir1.chr27                 17930931  46 +  44118849 I
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.KE027501                  2856   0 +     16385 I
e astMex1.KB882082               3904961 703 -   8876373 T
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e amaVit1.KB267266                 44469   1 +     45143 I
e equCab2.chr27                 18745073  63 -  39960074 I
e orcOrc1.KB316932               3016891   0 -  10937097 C
e rheMac3.chr8                  61650881 41461 + 150158102 I
e macFas5.chr8                  58323911 42259 + 146850525 I
e chlSab2.chr8                  53249873 36839 + 139301422 I
e ponAbe2.chr8                  59041017   0 + 153482349 C
e panTro4.chr8                  54977249 47550 + 143986469 I

a score=135.000000
s hg38.chr8_KI270814v1_alt         71321 4 +    141812 ACTT
s nomLeu3.chr16                 48114579 4 + 100215132 ACTT
i nomLeu3.chr16                C 0 C 0
s calJac3.chr3                 190755159 4 - 190850796 ACTT
i calJac3.chr3                 C 0 C 0
s saiBol1.JH378165              14118756 4 -  14256875 ACTT
i saiBol1.JH378165             C 0 C 0
s monDom5.chr3                 315953912 4 - 527952102 ACTT
i monDom5.chr3                 C 0 C 0
s sarHar1.chr2_GL841277_random    378359 4 -   1446407 ACTT
i sarHar1.chr2_GL841277_random C 0 C 0
s macEug2.GL053575                 10492 4 +     74274 ACTT
i macEug2.GL053575             C 0 C 0
s ornAna1.Contig22913               7948 4 +      9822 ACCC
i ornAna1.Contig22913          C 0 C 0
s colLiv1.KB375452               1390365 2 +   4234233 --AT
i colLiv1.KB375452             I 1 I 8
s falChe1.KB398121               1474174 1 +   3546035 ---T
i falChe1.KB398121             C 0 I 10
s falPer1.KB390921               1612112 1 +   3698665 ---T
i falPer1.KB390921             C 0 I 10
s anaPla1.KB742960                140271 2 +    531124 --AT
i anaPla1.KB742960             I 1 I 8
s galGal4.chrZ                  23194757 2 -  82363669 --AT
i galGal4.chrZ                 I 1 I 8
s melGal1.chrZ                  62955532 2 +  81011772 --AT
i melGal1.chrZ                 I 1 I 8
s allMis1.JH737334                 62221 4 -    565068 GCCT
i allMis1.JH737334             C 0 I 2
s cheMyd1.KB497515               3640480 4 +   9092468 ACCT
i cheMyd1.KB497515             I 1 C 0
s chrPic2.chrUn_KK082917v1      12457111 4 -  13974604 ACCT
i chrPic2.chrUn_KK082917v1     I 1 C 0
s pelSin1.JH211373               2649376 4 -   4257854 AACT
i pelSin1.JH211373             I 1 C 0
s apaSpi1.KB928558               3294700 4 -   3719163 AACT
i apaSpi1.KB928558             I 1 C 0
s anoCar2.chr2                  23371891 1 + 199619895 G---
i anoCar2.chr2                 I 1 C 0
e odoRosDiv1.KB229312             750185 2 -   2017862 I
e canFam3.chr16                 18192716 0 -  59632846 C
e felCat8.chrB1                 20474662 206 + 206538554 I
e oviAri3.chr26                 17845457 46 +  44077779 I
e bosTau8.chr27                 18218766 205 +  45407902 I
e panHod1.KE114653               1503331 46 -   2937107 I
e capHir1.chr27                 17930931 46 +  44118849 I
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.KE027501                  2856 0 +     16385 I
e astMex1.KB882082               3904961 703 -   8876373 T
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chrZ                  55057284 9 +  59856998 I
e pseHum1.KB221303                459980 12 -   1055857 I
e zonAlb1.KB913240                787871 52 -    852449 I
e geoFor1.JH739942               1279780 76 +   5104860 I
e amaVit1.KB267266                 44469 1 +     45143 I
e melUnd1.JH556568               2079318 11 +   4296882 I
e taeGut2.chrZ                  13216427 11 +  72861351 I
e equCab2.chr27                 18745073 63 -  39960074 I
e orcOrc1.KB316932               3016891 0 -  10937097 C
e rheMac3.chr8                  61650881 41461 + 150158102 I
e macFas5.chr8                  58323911 42259 + 146850525 I
e chlSab2.chr8                  53249873 36839 + 139301422 I
e ponAbe2.chr8                  59041017 0 + 153482349 C
e panTro4.chr8                  54977249 47550 + 143986469 I

a score=-68685.000000
s hg38.chr8_KI270814v1_alt         71325 25 +    141812 --------TCATACTTTTAAGGTAATAATAAAA
s nomLeu3.chr16                 48114583 25 + 100215132 --------TCATACTTTTAAGGtaataataaaa
i nomLeu3.chr16                C 0 I 1
s calJac3.chr3                 190755163 25 - 190850796 --------CCATACTTTTACaataataataaaa
i calJac3.chr3                 C 0 C 0
s saiBol1.JH378165              14118760 25 -  14256875 --------CCATACttttaaaataataataaaa
i saiBol1.JH378165             C 0 C 0
s monDom5.chr3                 315953916 24 - 527952102 --------CCATACTGTCTGGACGGTAA-AAGA
i monDom5.chr3                 C 0 C 0
s sarHar1.chr2_GL841277_random    378363 24 -   1446407 --------CCATACTGTTTGGACGGCAA-AAGA
i sarHar1.chr2_GL841277_random C 0 C 0
s macEug2.GL053575                 10496 24 +     74274 --------CCACACTATCTGGACGGTAA-AAGA
i macEug2.GL053575             C 0 C 0
s ornAna1.Contig22913               7952 24 +      9822 --------CAATACTGCTCAGG-GGCAGTATGT
i ornAna1.Contig22913          C 0 C 0
s colLiv1.KB375452               1390375 15 +   4234233 --------CTATGAATGCTGGAC----------
i colLiv1.KB375452             I 8 I 9
s falChe1.KB398121               1474185 15 +   3546035 --------CTATGAATCCTAGAC----------
i falChe1.KB398121             I 10 I 10
s falPer1.KB390921               1612123 15 +   3698665 --------CTGTGAATCCTAGAC----------
i falPer1.KB390921             I 10 I 10
s ficAlb2.chrZ                  55057293 15 +  59856998 --------CTTGAGATATTGATC----------
i ficAlb2.chrZ                 I 9 I 24
s taeGut2.chrZ                  13216438 15 +  72861351 --------CTGTGAATCCTAGGC----------
i taeGut2.chrZ                 I 11 I 26
s pseHum1.KB221303                459992 15 -   1055857 --------CTGTGAGTCCTAGAC----------
i pseHum1.KB221303             I 12 I 26
s melUnd1.JH556568               2079329 15 +   4296882 --------CTATGAACCCTAGAC----------
i melUnd1.JH556568             I 11 I 10
s anaPla1.KB742960                140281 15 +    531124 --------CTATGGATCCTGGAC----------
i anaPla1.KB742960             I 8 I 10
s galGal4.chrZ                  23194767 15 -  82363669 --------CTGTGAATCCTGGAC----------
i galGal4.chrZ                 I 8 I 10
s melGal1.chrZ                  62955542 15 +  81011772 --------CTGTGAATCCTGGAC----------
i melGal1.chrZ                 I 8 I 10
s allMis1.JH737334                 62227 15 -    565068 --------CTCTGAATTATGGCC----------
i allMis1.JH737334             I 2 I 3
s cheMyd1.KB497515               3640484 17 +   9092468 ------CACTATGAATCATGGAC----------
i cheMyd1.KB497515             C 0 I 10
s chrPic2.chrUn_KK082917v1      12457115 17 -  13974604 ------CACTATGAATCATGGAC----------
i chrPic2.chrUn_KK082917v1     C 0 I 10
s pelSin1.JH211373               2649380 17 -   4257854 ------CACTATTAATCATGGAT----------
i pelSin1.JH211373             C 0 I 10
s apaSpi1.KB928558               3294704 17 -   3719163 ------CACTATTAATCATGGAT----------
i apaSpi1.KB928558             C 0 I 10
s anoCar2.chr2                  23371892 23 + 199619895 AAACTCCTACGTGAACCACACAC----------
i anoCar2.chr2                 C 0 C 0
e odoRosDiv1.KB229312             750185  2 -   2017862 I
e canFam3.chr16                 18192716  0 -  59632846 C
e felCat8.chrB1                 20474662 206 + 206538554 I
e oviAri3.chr26                 17845457 46 +  44077779 I
e bosTau8.chr27                 18218766 205 +  45407902 I
e panHod1.KE114653               1503331 46 -   2937107 I
e capHir1.chr27                 17930931 46 +  44118849 I
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.KE027501                  2856  0 +     16385 I
e astMex1.KB882082               3904961 703 -   8876373 T
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e zonAlb1.KB913240                787871 52 -    852449 I
e geoFor1.JH739942               1279780 76 +   5104860 I
e amaVit1.KB267266                 44469  1 +     45143 I
e equCab2.chr27                 18745073 63 -  39960074 I
e orcOrc1.KB316932               3016891  0 -  10937097 C
e rheMac3.chr8                  61650881 41461 + 150158102 I
e macFas5.chr8                  58323911 42259 + 146850525 I
e chlSab2.chr8                  53249873 36839 + 139301422 I
e ponAbe2.chr8                  59041017  0 + 153482349 C
e panTro4.chr8                  54977249 47550 + 143986469 I

a score=-75943.000000
s hg38.chr8_KI270814v1_alt         71350 14 +    141812 TAATAA---TC-TTTA-AA
s nomLeu3.chr16                 48114609 14 + 100215132 taataa---tC-TTTA-AA
i nomLeu3.chr16                I 1 C 0
s calJac3.chr3                 190755188 13 - 190850796 taataa---t--ttCA-GA
i calJac3.chr3                 C 0 C 0
s saiBol1.JH378165              14118785 13 -  14256875 taataa---t--ttta-GA
i saiBol1.JH378165             C 0 C 0
s monDom5.chr3                 315953940 14 - 527952102 TGCT-A---TT-TCTTAAA
i monDom5.chr3                 C 0 C 0
s sarHar1.chr2_GL841277_random    378387 10 -   1446407 C----A---TT-TCTT-AT
i sarHar1.chr2_GL841277_random C 0 C 0
s macEug2.GL053575                 10520 14 +     74274 CATTAA---TT-TCTT-AA
i macEug2.GL053575             C 0 C 0
s ornAna1.Contig22913               7976 15 +      9822 GACTTT---TTATTTT-AA
i ornAna1.Contig22913          C 0 C 0
s colLiv1.KB375452               1390399 12 +   4234233 cttttt---cc-ttta---
i colLiv1.KB375452             I 9 I 17
s falChe1.KB398121               1474210 12 +   3546035 tattta---ct-ttta---
i falChe1.KB398121             I 10 I 26
s falPer1.KB390921               1612148 12 +   3698665 tattta---ct-ttta---
i falPer1.KB390921             I 10 I 26
s ficAlb2.chrZ                  55057332 12 +  59856998 cacttc---ct-ttta---
i ficAlb2.chrZ                 I 24 I 6
s zonAlb1.KB913240                787923  8 -    852449 ----TC---TT-TTGA---
i zonAlb1.KB913240             I 52 I 6
s taeGut2.chrZ                  13216479  8 +  72861351 ----TC---TT-TTGA---
i taeGut2.chrZ                 I 26 I 16
s pseHum1.KB221303                460033  8 -   1055857 ----tc---tt-ttta---
i pseHum1.KB221303             I 26 I 6
s melUnd1.JH556568               2079354 12 +   4296882 tatttc---ct-ttta---
i melUnd1.JH556568             I 10 I 9
s anaPla1.KB742960                140306 12 +    531124 tatttc---ct-ttta---
i anaPla1.KB742960             I 10 I 11
s galGal4.chrZ                  23194792 12 -  82363669 TATTTC---CT-TTTA---
i galGal4.chrZ                 I 10 I 11
s melGal1.chrZ                  62955567 12 +  81011772 TATTTC---CT-TTTA---
i melGal1.chrZ                 I 10 I 11
s allMis1.JH737334                 62245 11 -    565068 -ACTTT---TT-TTTA---
i allMis1.JH737334             I 3 I 17
s cheMyd1.KB497515               3640511 15 +   9092468 tatttcttgtt-ttaa---
i cheMyd1.KB497515             I 10 C 0
s chrPic2.chrUn_KK082917v1      12457142 15 -  13974604 TATTTCTTGTT-TAAA---
i chrPic2.chrUn_KK082917v1     I 10 C 0
s pelSin1.JH211373               2649407 14 -   4257854 tatttc-tttt-ttaa---
i pelSin1.JH211373             I 10 C 0
s apaSpi1.KB928558               3294731 14 -   3719163 tatttc-tgtt-ttaa---
i apaSpi1.KB928558             I 10 C 0
s anoCar2.chr2                  23371915  9 + 199619895 AACTTT---TC-T------
i anoCar2.chr2                 C 0 C 0
e odoRosDiv1.KB229312             750185  2 -   2017862 I
e canFam3.chr16                 18192716  0 -  59632846 C
e felCat8.chrB1                 20474662 206 + 206538554 I
e oviAri3.chr26                 17845457 46 +  44077779 I
e bosTau8.chr27                 18218766 205 +  45407902 I
e panHod1.KE114653               1503331 46 -   2937107 I
e capHir1.chr27                 17930931 46 +  44118849 I
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.KE027501                  2856  0 +     16385 I
e astMex1.KB882082               3904961 703 -   8876373 T
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e geoFor1.JH739942               1279780 76 +   5104860 I
e amaVit1.KB267266                 44469  1 +     45143 I
e equCab2.chr27                 18745073 63 -  39960074 I
e orcOrc1.KB316932               3016891  0 -  10937097 C
e rheMac3.chr8                  61650881 41461 + 150158102 I
e macFas5.chr8                  58323911 42259 + 146850525 I
e chlSab2.chr8                  53249873 36839 + 139301422 I
e ponAbe2.chr8                  59041017  0 + 153482349 C
e panTro4.chr8                  54977249 47550 + 143986469 I

a score=-132072.000000
s hg38.chr8_KI270814v1_alt         71364 19 +    141812 GAGCAACAGCCC----TTAACT-C
s nomLeu3.chr16                 48114623 19 + 100215132 GAGCAACAGCCC----TTAACT-C
i nomLeu3.chr16                C 0 C 0
s calJac3.chr3                 190755201 19 - 190850796 GAGCAACAGCCC----TTAACT-C
i calJac3.chr3                 C 0 C 0
s saiBol1.JH378165              14118798 19 -  14256875 GAGCAACAGCCC----TTAACT-C
i saiBol1.JH378165             C 0 C 0
s monDom5.chr3                 315953954 19 - 527952102 GAGCCCTAGCCC----ATAACT-C
i monDom5.chr3                 C 0 C 0
s sarHar1.chr2_GL841277_random    378397 23 -   1446407 GAGCAATAGCCCTTATTTAACT-C
i sarHar1.chr2_GL841277_random C 0 C 0
s macEug2.GL053575                 10534 23 +     74274 GAGCAATAGCCCTTATTTAACC-C
i macEug2.GL053575             C 0 C 0
s ornAna1.Contig22913               7991  8 +      9822 G---------------GTAACC-C
i ornAna1.Contig22913          C 0 C 0
s ficAlb2.chrZ                  55057350  2 +  59856998 --------------------tt--
i ficAlb2.chrZ                 I 6 I 20
s zonAlb1.KB913240                787937  2 -    852449 --------------------GC--
i zonAlb1.KB913240             I 6 I 9
s pseHum1.KB221303                460047  4 -   1055857 ------------------GAGC--
i pseHum1.KB221303             I 6 I 8
s melUnd1.JH556568               2079375  4 +   4296882 ------------------GGGC--
i melUnd1.JH556568             I 9 I 13
s anaPla1.KB742960                140329  4 +    531124 ------------------AGGC--
i anaPla1.KB742960             I 11 C 0
s galGal4.chrZ                  23194815  4 -  82363669 ------------------AGGC--
i galGal4.chrZ                 I 11 C 0
s melGal1.chrZ                  62955590  4 +  81011772 ------------------AGGC--
i melGal1.chrZ                 I 11 C 0
s allMis1.JH737334                 62273  4 -    565068 ------------------GGTC--
i allMis1.JH737334             I 17 C 0
s cheMyd1.KB497515               3640526 14 +   9092468 ----acTCTTCC----TTAACT--
i cheMyd1.KB497515             C 0 I 1
s chrPic2.chrUn_KK082917v1      12457157 14 -  13974604 ----ACCCTTCC----TTAACC--
i chrPic2.chrUn_KK082917v1     C 0 I 1
s pelSin1.JH211373               2649421 11 -   4257854 ----a---ttct----ttaatt--
i pelSin1.JH211373             C 0 I 1
s apaSpi1.KB928558               3294745 14 -   3719163 ----attcttcT----TTAATT--
i apaSpi1.KB928558             C 0 I 1
s anoCar2.chr2                  23371924 10 + 199619895 ---------CCA----GTAACTC-
i anoCar2.chr2                 C 0 C 0
e odoRosDiv1.KB229312             750185  2 -   2017862 I
e canFam3.chr16                 18192716  0 -  59632846 C
e felCat8.chrB1                 20474662 206 + 206538554 I
e oviAri3.chr26                 17845457 46 +  44077779 I
e bosTau8.chr27                 18218766 205 +  45407902 I
e panHod1.KE114653               1503331 46 -   2937107 I
e capHir1.chr27                 17930931 46 +  44118849 I
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.KE027501                  2856  0 +     16385 I
e astMex1.KB882082               3904961 703 -   8876373 T
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e colLiv1.KB375452               1390411 17 +   4234233 I
e falPer1.KB390921               1612160 26 +   3698665 I
e falChe1.KB398121               1474222 26 +   3546035 I
e geoFor1.JH739942               1279780 76 +   5104860 I
e amaVit1.KB267266                 44469  1 +     45143 I
e taeGut2.chrZ                  13216487 16 +  72861351 I
e equCab2.chr27                 18745073 63 -  39960074 I
e orcOrc1.KB316932               3016891  0 -  10937097 C
e rheMac3.chr8                  61650881 41461 + 150158102 I
e macFas5.chr8                  58323911 42259 + 146850525 I
e chlSab2.chr8                  53249873 36839 + 139301422 I
e ponAbe2.chr8                  59041017  0 + 153482349 C
e panTro4.chr8                  54977249 47550 + 143986469 I

a score=-2135.000000
s hg38.chr8_KI270814v1_alt         71383 3 +    141812 TTT
s nomLeu3.chr16                 48114642 3 + 100215132 TTT
i nomLeu3.chr16                C 0 C 0
s calJac3.chr3                 190755220 3 - 190850796 TTT
i calJac3.chr3                 C 0 C 0
s saiBol1.JH378165              14118817 1 -  14256875 --T
i saiBol1.JH378165             C 0 C 0
s monDom5.chr3                 315953973 3 - 527952102 TTC
i monDom5.chr3                 C 0 C 0
s sarHar1.chr2_GL841277_random    378420 3 -   1446407 TTG
i sarHar1.chr2_GL841277_random C 0 C 0
s macEug2.GL053575                 10557 3 +     74274 TTG
i macEug2.GL053575             C 0 C 0
s ornAna1.Contig22913               7999 3 +      9822 TTT
i ornAna1.Contig22913          C 0 C 0
s colLiv1.KB375452               1390428 1 +   4234233 --T
i colLiv1.KB375452             I 17 I 12
s falChe1.KB398121               1474248 3 +   3546035 TCT
i falChe1.KB398121             I 26 C 0
s falPer1.KB390921               1612186 3 +   3698665 TCT
i falPer1.KB390921             I 26 C 0
s zonAlb1.KB913240                787948 2 -    852449 -ct
i zonAlb1.KB913240             I 9 I 1
s anaPla1.KB742960                140333 1 +    531124 --T
i anaPla1.KB742960             C 0 I 12
s galGal4.chrZ                  23194819 1 -  82363669 --T
i galGal4.chrZ                 C 0 I 12
s melGal1.chrZ                  62955594 1 +  81011772 --T
i melGal1.chrZ                 C 0 I 12
s allMis1.JH737334                 62277 2 -    565068 -TT
i allMis1.JH737334             C 0 I 11
s cheMyd1.KB497515               3640541 2 +   9092468 -CT
i cheMyd1.KB497515             I 1 I 1
s chrPic2.chrUn_KK082917v1      12457172 2 -  13974604 -TT
i chrPic2.chrUn_KK082917v1     I 1 I 1
s pelSin1.JH211373               2649433 2 -   4257854 -TT
i pelSin1.JH211373             I 1 I 1
s apaSpi1.KB928558               3294760 2 -   3719163 -TT
i apaSpi1.KB928558             I 1 I 1
s anoCar2.chr2                  23371934 2 + 199619895 -TT
i anoCar2.chr2                 C 0 I 1
e odoRosDiv1.KB229312             750185 2 -   2017862 I
e canFam3.chr16                 18192716 0 -  59632846 C
e felCat8.chrB1                 20474662 206 + 206538554 I
e oviAri3.chr26                 17845457 46 +  44077779 I
e bosTau8.chr27                 18218766 205 +  45407902 I
e panHod1.KE114653               1503331 46 -   2937107 I
e capHir1.chr27                 17930931 46 +  44118849 I
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.KE027501                  2856 0 +     16385 I
e astMex1.KB882082               3904961 703 -   8876373 T
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chrZ                  55057352 20 +  59856998 I
e pseHum1.KB221303                460051 8 -   1055857 I
e geoFor1.JH739942               1279780 76 +   5104860 I
e amaVit1.KB267266                 44469 1 +     45143 I
e melUnd1.JH556568               2079379 13 +   4296882 I
e taeGut2.chrZ                  13216487 16 +  72861351 I
e equCab2.chr27                 18745073 63 -  39960074 I
e orcOrc1.KB316932               3016891 0 -  10937097 C
e rheMac3.chr8                  61650881 41461 + 150158102 I
e macFas5.chr8                  58323911 42259 + 146850525 I
e chlSab2.chr8                  53249873 36839 + 139301422 I
e ponAbe2.chr8                  59041017 0 + 153482349 C
e panTro4.chr8                  54977249 47550 + 143986469 I

a score=-43979.000000
s hg38.chr8_KI270814v1_alt         71386 41 +    141812 G---------------CTGGTGCTTGCC------ATACT-----------------GCCC--------------TTCTTT--ACTCC-ATTCTTAG
s nomLeu3.chr16                 48114645 41 + 100215132 G---------------CTGGTGCTTGCC------ATACT-----------------GCCC--------------TTCTTT--ACTCC-ATTCTTAG
i nomLeu3.chr16                C 0 C 0
s calJac3.chr3                 190755223 41 - 190850796 G---------------CTGCTGCCTCTC------ACACT-----------------GCCT--------------TTCTTC--ACCCC-ATTCTTAG
i calJac3.chr3                 C 0 C 0
s saiBol1.JH378165              14118818 41 -  14256875 G---------------CTGATGCCTCTC------ATACT-----------------GCCT--------------TTCTTC--ACCCC-ATTCTTAG
i saiBol1.JH378165             C 0 C 0
s monDom5.chr3                 315953976 55 - 527952102 G---------------CTGGTGCCGGCT-----GATACT-----------------GGCTGATACTGCCTTTCATTATT---ATTCC-ATTTTCAG
i monDom5.chr3                 C 0 C 0
s sarHar1.chr2_GL841277_random    378423 41 -   1446407 G---------------CTGGTGCCTGCT-----GATACT-----------------GCct--------------ttatt---attcc-attttcag
i sarHar1.chr2_GL841277_random C 0 C 0
s macEug2.GL053575                 10560 41 +     74274 G---------------CTGGTGCCGGCT-----GATACT-----------------GTCT--------------TCCTT---ACTCC-ATTTTCAG
i macEug2.GL053575             C 0 C 0
s ornAna1.Contig22913               8002 40 +      9822 G---------------CTAGTACCTGCT--GCTGGTACT-----------------GTCT--------------TT------GCTCC-ATTGTAG-
i ornAna1.Contig22913          C 0 C 0
s colLiv1.KB375452               1390441 51 +   4234233 g---------------ctggtgctgctttcatttgtgcc-----------tttttatctt--------------tttttaaagcttc-acaa----
i colLiv1.KB375452             I 12 C 0
s falChe1.KB398121               1474251 58 +   3546035 G---------------CTGGTGC---TTtcatttgtgcc-ttttttttttcctttttttt--------------tttttaaagcttc-acaA----
i falChe1.KB398121             C 0 C 0
s falPer1.KB390921               1612189 59 +   3698665 G---------------CTGGTGC---TTtcatttgtgccttttttttttttccttttttt--------------tttttaaagcttc-acaA----
i falPer1.KB390921             C 0 C 0
s ficAlb2.chrZ                  55057372 45 +  59856998 g---------------ctggtgctgctttcatttatgcc-----------------tttt--------------tttttagaGCTTC-ACAA----
i ficAlb2.chrZ                 I 20 C 0
s zonAlb1.KB913240                787951 42 -    852449 -------------------gtgctgctttcatttatgcc----------------ttttt--------------tttttagagcttC-ACAA----
i zonAlb1.KB913240             I 1 C 0
s geoFor1.JH739942               1279856 45 +   5104860 g---------------ctggtgctgctttcatttatgcc-----------------tttt--------------tttttagaGCTTC-ACAA----
i geoFor1.JH739942             I 76 C 0
s taeGut2.chrZ                  13216503 44 +  72861351 G---------------CTGGTGCTGCTTTCATTTATGCC------------------TTT--------------CTTTTAGAGCTTC-ACAA----
i taeGut2.chrZ                 I 16 C 0
s pseHum1.KB221303                460059 46 -   1055857 G---------------CTGGTGCTGGTTTcatttatgcc----------------ttttt--------------tttttagagcttC-ACAA----
i pseHum1.KB221303             I 8 C 0
s melUnd1.JH556568               2079392 45 +   4296882 G---------------CTGGTGTTG-TTTCATCTgtgtc----------------attat--------------tttttaaagcttc-acAA----
i melUnd1.JH556568             I 13 C 0
s anaPla1.KB742960                140346 52 +    531124 ACGG----------GGCGGGTGCTGCTTTCACttgtgcc-------tttgt--------t--------------tttttaaagcttc-acaA----
i anaPla1.KB742960             I 12 C 0
s galGal4.chrZ                  23194832 55 -  82363669 A---------------CTGGTGCTGCTTTCACTTGTgcc-------tttattgtttttat--------------tttttaaagcttc-acaA----
i galGal4.chrZ                 I 12 C 0
s melGal1.chrZ                  62955607 55 +  81011772 A---------------CTGGTGCTGCTTTCACTTGTGCC-------TTTATTATTTCTAT--------------TTTTTAAAGCTTC-ACAA----
i melGal1.chrZ                 I 12 C 0
s allMis1.JH737334                 62290 42 -    565068 G---------------CTGGTGCTGCCTTCATTT-TGCT-------------------TC--------------ATTTTTAAGCTTC-ACAA----
i allMis1.JH737334             I 11 C 0
s cheMyd1.KB497515               3640544 41 +   9092468 ---------------GCTGGTG-----TCTGCTGGTGCT-----------------GCCT--------------TCTTTTAAGCTTCAAAAA----
i cheMyd1.KB497515             I 1 C 0
s chrPic2.chrUn_KK082917v1      12457175 40 -  13974604 ---------------GCTGGTG-----TCTGCTGGTGCT-----------------GCCT--------------TCTTTTAAGCTTC-AAAA----
i chrPic2.chrUn_KK082917v1     I 1 C 0
s pelSin1.JH211373               2649436 40 -   4257854 ---------------CTGGGTG-----TGTGCTGGTGCT-----------------GTCT--------------TCTTTTAAGCTTC-AAAA----
i pelSin1.JH211373             I 1 C 0
s apaSpi1.KB928558               3294763 40 -   3719163 ---------------CCTAATG-----TGTGCTGGTGCT-----------------GTCT--------------TCTTTTAAGCTTC-AAAA----
i apaSpi1.KB928558             I 1 C 0
s anoCar2.chr2                  23371937 53 + 199619895 ---GCAGATAAAATGTTGGGTGC----TAAGCTCCTGCA-----------------GCTT--------------TTCTAAATACACT-TTCA----
i anoCar2.chr2                 I 1 C 0
e odoRosDiv1.KB229312             750185  2 -   2017862 I
e canFam3.chr16                 18192716  0 -  59632846 C
e felCat8.chrB1                 20474662 206 + 206538554 I
e oviAri3.chr26                 17845457 46 +  44077779 I
e bosTau8.chr27                 18218766 205 +  45407902 I
e panHod1.KE114653               1503331 46 -   2937107 I
e capHir1.chr27                 17930931 46 +  44118849 I
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.KE027501                  2856  0 +     16385 I
e astMex1.KB882082               3904961 703 -   8876373 T
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e amaVit1.KB267266                 44469  1 +     45143 I
e equCab2.chr27                 18745073 63 -  39960074 I
e orcOrc1.KB316932               3016891  0 -  10937097 C
e rheMac3.chr8                  61650881 41461 + 150158102 I
e macFas5.chr8                  58323911 42259 + 146850525 I
e chlSab2.chr8                  53249873 36839 + 139301422 I
e ponAbe2.chr8                  59041017  0 + 153482349 C
e panTro4.chr8                  54977249 47550 + 143986469 I

a score=854016.000000
s hg38.chr8_KI270814v1_alt         71427 85 +    141812 CTCT-T---CTAG-----CTGCTTCTTGTA-------------ATA-ATG-----AAAT-GGGAATGTGGATGGG-TT-ATGACTTTTGTGTATGTCCCATTTCC------AAATTTCCCTC
s ponAbe2.chr8                  59041017 85 + 153482349 CTCT-T---CTAG-----CTGCTTCTTGTA-------------ATA-ATG-----AAAA-GGGAATGTGGATGGG-TT-ATGACTTCTGTGTATGTCCCATTTCC------AAATTTCCCTC
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48114686 85 + 100215132 CTCT-T---CTAG-----CTGCTTCTTGTA-------------ATA-ATG-----AAAA-GGGAATGTGGATGGG-TT-ATGACTTTTGTGTATGTCTCATTTCC------AAATTTCCCTC
i nomLeu3.chr16                C 0 C 0
s calJac3.chr3                 190755264 89 - 190850796 CTCT-G---CCAG-----TCTCTTCTTGTG------------TATA-ACGA--TAAAAA-GGGAATGTGGATGGT-TT-ATCACTTTTGGGTAGGTCCCCTTTCC------AAATTTTTCTT
i calJac3.chr3                 C 0 C 0
s saiBol1.JH378165              14118859 83 -  14256875 CTCT-G---CTAG-----TTTCTTCTTATA------------TATA-ATGA--T-AAAA-GGGAATGTGGATGGT-TT-----CTTTTGGGTAAGTCCTCTTTCC------AAA-TTCCCTT
i saiBol1.JH378165             C 0 C 0
s monDom5.chr3                 315954031 92 - 527952102 CTCT-G---TTCA-----TTTCTTCTTCCA-TG---------TATA-ATGA--TAAAAA-GGGAATGTGGGTGAG-TTTTTAACTTTTGTGTATGTCCCTTTTCC------AAATCTCCCTC
i monDom5.chr3                 C 0 C 0
s sarHar1.chr2_GL841277_random    378464 93 -   1446407 CTCTTG---CTAA-----TTTCTTCTTCCA-TG---------TATA-ATGA--TAAAAA-GGGAATGTGGGTGGG-TTTTTAACTTTTGTGTATGTCCCTTTTCC------aaatctccctc
i sarHar1.chr2_GL841277_random C 0 C 0
s macEug2.GL053575                 10601 93 +     74274 TTCTCG---CTCA-----TTTCTTCTTCCA-TG---------TGTA-ATGA--TAAAAA-GGGAATGTGGGTGGG-CTTTTGACTTTTGTGTATGTCCCTTTTCC------AAATCTCCCTC
i macEug2.GL053575             C 0 C 0
s ornAna1.Contig22913               8042 81 +      9822 TTTT-G---CTCA-----TTTC---------------------AGA-AGGA--TAAAAA-GGGAATGTGGGTGGC-TTCATCCCTTTTGTGCATGTCCCTTATTC------AAATCCCCCTC
i ornAna1.Contig22913          C 0 C 0
s colLiv1.KB375452               1390492 91 +   4234233 cttg-a---act------tttttttaataa-tg---------tata-aAGA--G-AAAT-GGGAATGAAGGTGGGTTTTGTAACTTTTGTGTATGTCCCTAGTCC------AGATCCCCCTc
i colLiv1.KB375452             C 0 I 18
s falChe1.KB398121               1474309 97 +   3546035 CTTT-A---GTTTAGTATCTTCTTTTGTAA-TG---------taga-aaga--g-aaat-gggaatGAGGGTGGGTTTTGAAACTTTTGTGTATGTCCCTATTCC------AGATCCCCCTC
i falChe1.KB398121             C 0 I 23
s falPer1.KB390921               1612248 97 +   3698665 CTTT-A---GTTTAGTATCTTCTTTTGTAA-TG---------taga-aaga--g-aaat-gggaatGAGGGTGGGTTTTGAAACTTTTGTGTATGTCCCTATTCC------AGATCCCCCTC
i falPer1.KB390921             C 0 I 23
s ficAlb2.chrZ                  55057417 90 +  59856998 CTTG-A---ACA------CTTTATTTATAA-TG---------taga-aaga--g-aaat-gggaatgA-GGTGGGTTTTGTAACTTTTGTGTATGTCCCTATTCC------AGATCTCCCTC
i ficAlb2.chrZ                 C 0 I 22
s zonAlb1.KB913240                787993 90 -    852449 cttg-a---aca------ttttttttaaaa-tg---------caga-aaga--g-aaat-gggaatga-GGAGGATTTTGTAACTTTTGTGTATGTCCTTATTCC------AGATCTCCCTC
i zonAlb1.KB913240             C 0 I 23
s geoFor1.JH739942               1279901 92 +   5104860 CTTG-A---ACAT----CttttttttAtaa-tg---------caga-aaga--g-aaat-gggaatga-GGAGGATTTTGTAACTTTTGTGTATGTCCTTATTCC------AGATCTCCCTC
i geoFor1.JH739942             C 0 I 23
s taeGut2.chrZ                  13216547 92 +  72861351 CTTG-A---ACAT----CTTTTTTTTATAA-TG---------CAGA-AAGA--G-AAAT-GGGAATGA-GGAGGGTTTTGTAACTTTTGTGTATGTCCTTATTCC------AGATCTCCCTC
i taeGut2.chrZ                 C 0 I 22
s pseHum1.KB221303                460105 91 -   1055857 CTTG-A---ATGT-----CATTTTTTATAA-TG---------taga-aaga--g-aaat-gggaatga-GGTGGGTTTTGTAACTTTTGTGTATGTCCCTACTCC------AGATCTCCCTC
i pseHum1.KB221303             C 0 I 22
s melUnd1.JH556568               2079437 92 +   4296882 CTTC-A---ACAT-----CTTTTTTCATgg-tt---------caga-aaga--g-aaat-gggaatGAGGGTGGGTTTTCTAACTTTTGTGTATGTCCCTATTCC------AGATCCCCATC
i melUnd1.JH556568             C 0 I 72
s anaPla1.KB742960                140398 89 +    531124 CTTG-A---ACA------TCTTTTTCATaa-tg---------taga---aa--g-aaaa-gggaatgagGGTGGCTTTTGTAACTTTTGTGTATGTCCCTATTGC------AGATCCCCCTC
i anaPla1.KB742960             C 0 I 22
s galGal4.chrZ                  23194887 95 -  82363669 CTTG-AAACATC------TCTTTTTcataa-tg---------caggaaaaa--a-aaaa-gggaatgagGGTGGCTTTTATAACTTTTGTGTATGTCCCTATTGC------AGATCCCCCTC
i galGal4.chrZ                 C 0 I 22
s melGal1.chrZ                  62955662 94 +  81011772 CTTG-AAACATC------TCTTTTTCATAA-TG---------TAGG-AAGA--A-AAAA-GGGAATGAGGGTGGCTTTTATAACTTTTGTGTATGTCCCTATTGC------AGCTCCCCCTC
i melGal1.chrZ                 C 0 I 22
s allMis1.JH737334                 62332 93 -    565068 GTTG-A---CTCT-----CTCTTCATAAAT-TG---------TAGA-AAAGATA-AAAA-GGGAATAAGGGTGGG-TTTGTTACTTTTGTGTATGTCCCTATTCC------AAATCCCCCTT
i allMis1.JH737334             C 0 I 33
s cheMyd1.KB497515               3640585 85 +   9092468 CTTG-A---CCAA-----TCTCTTCTGAAGTTG---------CAGA-AAGA--T-AAAA--------AGGGTGCA-TTTGTTACTTATGGGCATGTCCCTTTTCT------AAATCCCCCTC
i cheMyd1.KB497515             C 0 I 4
s chrPic2.chrUn_KK082917v1      12457215 92 -  13974604 CTTG-A---CCAG-----TCTTTTCTGAAGTTG---------CAAA-AAGA--T-AAAAAGGGAACGAGGGTGCA--TTGTTACTTATGGGCATGTCCCTTTTCT------AAATccccctt
i chrPic2.chrUn_KK082917v1     C 0 I 4
s pelSin1.JH211373               2649476 97 -   4257854 CTTG-A---TGAG-----TATCTTCTGTAGTTG---------CAGA-AAGA--T-ACAA-GAGAATGAGGGTGCA-TGTGTTACTTTTGGGCatgtccctttttt-taaaaaaatcctcctt
i pelSin1.JH211373             C 0 I 5
s apaSpi1.KB928558               3294803 98 -   3719163 CTCG-A---TGAG-----TATCTTCTGTAGTTG---------CAGA-AAGA--T-ACAA-GAGAATGAGGGTGCA-TGTGTTACTTTTGGGCatgtcccttttttaaaaaaaaatccccctc
i apaSpi1.KB928558             C 0 I 5
s anoCar2.chr2                  23371990 88 + 199619895 TTTT-C---CCAC-----TTTTCTTAGTGG-TGTTTTGTGTTTTGG-AAAA--A-TAAT-AGGA------------TGTGTTAATT-TGTGTATGTCCCTTTTCC------AAGTCCCCCAT
i anoCar2.chr2                 C 0 C 0
e odoRosDiv1.KB229312             750185  2 -   2017862 I
e canFam3.chr16                 18192716  0 -  59632846 C
e felCat8.chrB1                 20474662 206 + 206538554 I
e oviAri3.chr26                 17845457 46 +  44077779 I
e bosTau8.chr27                 18218766 205 +  45407902 I
e panHod1.KE114653               1503331 46 -   2937107 I
e capHir1.chr27                 17930931 46 +  44118849 I
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.KE027501                  2856  0 +     16385 I
e astMex1.KB882082               3904961 703 -   8876373 T
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e amaVit1.KB267266                 44469  1 +     45143 I
e equCab2.chr27                 18745073 63 -  39960074 I
e orcOrc1.KB316932               3016891  0 -  10937097 C
e rheMac3.chr8                  61650881 41461 + 150158102 I
e macFas5.chr8                  58323911 42259 + 146850525 I
e chlSab2.chr8                  53249873 36839 + 139301422 I
e panTro4.chr8                  54977249 47550 + 143986469 I

a score=9746.000000
s hg38.chr8_KI270814v1_alt         71512 10 +    141812 T-------------------C-------------caa-aaagc
s ponAbe2.chr8                  59041102 10 + 153482349 T-------------------C-------------CAA-AAAGC
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48114771 10 + 100215132 T-------------------C-------------CAA-AAAGC
i nomLeu3.chr16                C 0 C 0
s calJac3.chr3                 190755353 10 - 190850796 C-------------------C-------------CAA-AAAGC
i calJac3.chr3                 C 0 C 0
s saiBol1.JH378165              14118942 10 -  14256875 C-------------------C-------------CAA-AAAGC
i saiBol1.JH378165             C 0 C 0
s monDom5.chr3                 315954123 10 - 527952102 C-------------------C-------------CCc-aaaac
i monDom5.chr3                 C 0 C 0
s sarHar1.chr2_GL841277_random    378557 11 -   1446407 c-------------------c-------------cccaaaaac
i sarHar1.chr2_GL841277_random C 0 C 0
s macEug2.GL053575                 10694  9 +     74274 C-------------------C-------------Cc--aaaac
i macEug2.GL053575             C 0 C 0
s ornAna1.Contig22913               8123 10 +      9822 T-------------------C-------------CAA-AAAGC
i ornAna1.Contig22913          C 0 C 0
s colLiv1.KB375452               1390601  9 +   4234233 --------------------a-------------cac-aaaca
i colLiv1.KB375452             I 18 C 0
s falChe1.KB398121               1474429  9 +   3546035 --------------------a-------------cac-aaaca
i falChe1.KB398121             I 23 C 0
s falPer1.KB390921               1612368  9 +   3698665 --------------------a-------------cac-aaaca
i falPer1.KB390921             I 23 C 0
s ficAlb2.chrZ                  55057529  9 +  59856998 --------------------a-------------cac-aaaca
i ficAlb2.chrZ                 I 22 C 0
s zonAlb1.KB913240                788106  9 -    852449 --------------------a-------------cac-aaaca
i zonAlb1.KB913240             I 23 C 0
s geoFor1.JH739942               1280016  9 +   5104860 --------------------a-------------cac-aaaca
i geoFor1.JH739942             I 23 C 0
s taeGut2.chrZ                  13216661  9 +  72861351 --------------------a-------------cac-aaaca
i taeGut2.chrZ                 I 22 C 0
s pseHum1.KB221303                460218  9 -   1055857 --------------------a-------------cac-aaaca
i pseHum1.KB221303             I 22 C 0
s melUnd1.JH556568               2079601  9 +   4296882 --------------------a-------------tac-cgaca
i melUnd1.JH556568             I 72 C 0
s anaPla1.KB742960                140509  9 +    531124 --------------------a-------------cac-aaaca
i anaPla1.KB742960             I 22 C 0
s galGal4.chrZ                  23195004  7 -  82363669 --------------------a-------------cac---aca
i galGal4.chrZ                 I 22 C 0
s melGal1.chrZ                  62955778  7 +  81011772 --------------------a-------------cac---aca
i melGal1.chrZ                 I 22 C 0
s allMis1.JH737334                 62458 22 -    565068 --------------------AACCCCAGAAAACCCAC-AAACA
i allMis1.JH737334             I 33 C 0
s cheMyd1.KB497515               3640674  9 +   9092468 --------------------a-------------taa-aaacc
i cheMyd1.KB497515             I 4 C 0
s chrPic2.chrUn_KK082917v1      12457311  9 -  13974604 --------------------a-------------taa-aaaac
i chrPic2.chrUn_KK082917v1     I 4 C 0
s pelSin1.JH211373               2649578  9 -   4257854 --------------------a-------------taa-aaaaa
i pelSin1.JH211373             I 5 C 0
s apaSpi1.KB928558               3294906  9 -   3719163 --------------------a-------------aaa-aaaaa
i apaSpi1.KB928558             I 5 C 0
s anoCar2.chr2                  23372078 29 + 199619895 CCaaataaaacaatgaagtaa-------------caa-aaaca
i anoCar2.chr2                 C 0 C 0
e odoRosDiv1.KB229312             750185  2 -   2017862 I
e canFam3.chr16                 18192716  0 -  59632846 C
e felCat8.chrB1                 20474662 206 + 206538554 I
e oviAri3.chr26                 17845457 46 +  44077779 I
e bosTau8.chr27                 18218766 205 +  45407902 I
e panHod1.KE114653               1503331 46 -   2937107 I
e capHir1.chr27                 17930931 46 +  44118849 I
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.KE027501                  2856  0 +     16385 I
e astMex1.KB882082               3904961 703 -   8876373 T
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e amaVit1.KB267266                 44469  1 +     45143 I
e equCab2.chr27                 18745073 63 -  39960074 I
e orcOrc1.KB316932               3016891  0 -  10937097 C
e rheMac3.chr8                  61650881 41461 + 150158102 I
e macFas5.chr8                  58323911 42259 + 146850525 I
e chlSab2.chr8                  53249873 36839 + 139301422 I
e panTro4.chr8                  54977249 47550 + 143986469 I

a score=-248131.000000
s hg38.chr8_KI270814v1_alt         71522 20 +    141812 caaccaaataaacaa--a-----------------------------------aat---------------------------------------------------------------a
s ponAbe2.chr8                  59041112 20 + 153482349 CAACCAAATAAACAA--A-----------------------------------AAT---------------------------------------------------------------A
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48114781 20 + 100215132 CAACCAAATAAACAA--A-----------------------------------AAT---------------------------------------------------------------A
i nomLeu3.chr16                C 0 C 0
s calJac3.chr3                 190755363 22 - 190850796 TAACCAAATAAACAA--A---------------------------------CGAAA---------------------------------------------------------------A
i calJac3.chr3                 C 0 C 0
s saiBol1.JH378165              14118952 22 -  14256875 TAACCAAATAAACAA--A---------------------------------CAAAA---------------------------------------------------------------A
i saiBol1.JH378165             C 0 C 0
s monDom5.chr3                 315954133 62 - 527952102 caaccaaataaacaaagaacaaaaaaaattaaaaacagaaaataacaacaacaaaa----------------------------------------------------------aATTCA
i monDom5.chr3                 C 0 C 0
s sarHar1.chr2_GL841277_random    378568 58 -   1446407 caactcaataaacaa--aacaacaacaa-aaaaagaaacaaaaaacaacaac-aaa----------------------------------------------------------aattca
i sarHar1.chr2_GL841277_random C 0 C 0
s macEug2.GL053575                 10703 60 +     74274 caaccacataaacaa--aatgacaacaacaaaaatacaaaaacaagaacaacaaaa----------------------------------------------------------aaTTCA
i macEug2.GL053575             C 0 C 0
s ornAna1.Contig22913               8133 25 +      9822 CGACCTACCAAAAAA--A-----------------------------------AAA----------------------------------------------------------AAAATG
i ornAna1.Contig22913          C 0 C 0
s colLiv1.KB375452               1390610 23 +   4234233 caaaacaa--aaaag--a-----------------------------------agt----------------------------------------------------------aactca
i colLiv1.KB375452             C 0 C 0
s falChe1.KB398121               1474438 23 +   3546035 caaaacaa--aaaag--a-----------------------------------agt----------------------------------------------------------aactaa
i falChe1.KB398121             C 0 C 0
s falPer1.KB390921               1612377 23 +   3698665 caaaacaa--aaaag--a-----------------------------------agt----------------------------------------------------------aactaa
i falPer1.KB390921             C 0 C 0
s ficAlb2.chrZ                  55057538 24 +  59856998 caaaacaa-aaaaag--a-----------------------------------act----------------------------------------------------------aactca
i ficAlb2.chrZ                 C 0 C 0
s zonAlb1.KB913240                788115 21 -    852449 caa---aa-aaaaag--a-----------------------------------act----------------------------------------------------------aattca
i zonAlb1.KB913240             C 0 C 0
s geoFor1.JH739942               1280025 19 +   5104860 c-----aa-aaaaag--a-----------------------------------act----------------------------------------------------------aactca
i geoFor1.JH739942             C 0 C 0
s taeGut2.chrZ                  13216670 20 +  72861351 caaaacaa-aaaaag--a-----------------------------------act----------------------------------------------------------a----a
i taeGut2.chrZ                 C 0 C 0
s pseHum1.KB221303                460227 24 -   1055857 caaaacaa-aaaaag--a-----------------------------------act----------------------------------------------------------aactca
i pseHum1.KB221303             C 0 C 0
s melUnd1.JH556568               2079610 19 +   4296882 cgaaaaaa-gaaaag--t-----------------------------------agt---------------------------------------------------------------a
i melUnd1.JH556568             C 0 C 0
s amaVit1.AOCU01161969                53 17 +       293 --agaaaa-aaaaag--t-----------------------------------agt---------------------------------------------------------------a
i amaVit1.AOCU01161969         n 1 C 0
s anaPla1.KB742960                140518 20 +    531124 caaaacaa-----ag--a-----------------------------------agt----------------------------------------------------------aattca
i anaPla1.KB742960             C 0 C 0
s galGal4.chrZ                  23195011 20 -  82363669 caaaacaa-----ag--a-----------------------------------agt----------------------------------------------------------aactaa
i galGal4.chrZ                 C 0 C 0
s melGal1.chrZ                  62955785 20 +  81011772 caaaacaa-----ag--a-----------------------------------agt----------------------------------------------------------aactaa
i melGal1.chrZ                 C 0 C 0
s allMis1.JH737334                 62480 14 -    565068 CAAAACAA------A--A-----------------------------------AGT---------------------------------------------------------------A
i allMis1.JH737334             C 0 C 0
s cheMyd1.KB497515               3640683 29 +   9092468 aaagggaa--aaaaa--a-----------------------------------acc----------------------------------------------------aaagaaaaagta
i cheMyd1.KB497515             C 0 C 0
s chrPic2.chrUn_KK082917v1      12457320 22 -  13974604 aaagg-----aaaaa--a-----------------------------------acc--------------------------------------------------------aaaaagta
i chrPic2.chrUn_KK082917v1     C 0 C 0
s pelSin1.JH211373               2649587 25 -   4257854 aaaaagaa--agaaa--g-----------------------------------aaa--------------------------------------------------------aaaaagta
i pelSin1.JH211373             C 0 C 0
s apaSpi1.KB928558               3294915 81 -   3719163 aaaaaaaa--aaaaa--a-----------------------------------aaaaaaaNNNNNNNNNNNNNNNNtaaaaaaaaaaaaaaaaaagaaagaaagaaagaaagaaaaagta
i apaSpi1.KB928558             C 0 C 0
s anoCar2.chr2                  23372107 27 + 199619895 gaaagaga-aagaag--a-----------------------------------aga-------------------------------------------------------aaaaactca
i anoCar2.chr2                 C 0 C 0
s xenTro7.KB021649             178198520 18 - 215906545 CAACCCAT--AAAAC--A-----------------------------------TAG---------------------------------------------------------------A
i xenTro7.KB021649             N 0 C 0
e odoRosDiv1.KB229312             750185  2 -   2017862 I
e canFam3.chr16                 18192716  0 -  59632846 C
e felCat8.chrB1                 20474662 206 + 206538554 I
e oviAri3.chr26                 17845457 46 +  44077779 I
e bosTau8.chr27                 18218766 205 +  45407902 I
e panHod1.KE114653               1503331 46 -   2937107 I
e capHir1.chr27                 17930931 46 +  44118849 I
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.KE027501                  2856  0 +     16385 I
e astMex1.KB882082               3904961 703 -   8876373 T
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e equCab2.chr27                 18745073 63 -  39960074 I
e orcOrc1.KB316932               3016891  0 -  10937097 C
e rheMac3.chr8                  61650881 41461 + 150158102 I
e macFas5.chr8                  58323911 42259 + 146850525 I
e chlSab2.chr8                  53249873 36839 + 139301422 I
e panTro4.chr8                  54977249 47550 + 143986469 I

a score=1330239.000000
s hg38.chr8_KI270814v1_alt         71542 50 +    141812 acagtgc----aacaa-aac-----acaa-acaGC-ATTCCAAACGTTTGGCAAGTGATGCT
s ponAbe2.chr8                  59041132 50 + 153482349 ACAGTGC----AACAA-AAC-----ACAA-ATAGC-ATTCCAAATGTTTGGCAAGTGATGCT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48114801 50 + 100215132 ACAGTGC----AACAA-AAC-----ACAA-ATAGC-ATTCCAAACGTTTGGCAAGTGACACT
i nomLeu3.chr16                C 0 C 0
s calJac3.chr3                 190755385 43 - 190850796 ACAGCGA----AACAA-AAC-----ACAA-ACAGG-GTTCCAACCGTTCGGCAAG-------
i calJac3.chr3                 C 0 C 0
s saiBol1.JH378165              14118974 43 -  14256875 ACAGTGC----AAAGA-AAC-----ACAA-ATAGG-ATTCCAATCCTTTGGCAAG-------
i saiBol1.JH378165             C 0 C 0
s monDom5.chr3                 315954195 50 - 527952102 ACAGTGC----AATAA-AAC-----ACAA-ATAGC-ATTCCAACAGTTTGGCAAGTGATGCG
i monDom5.chr3                 C 0 C 0
s sarHar1.chr2_GL841277_random    378626 50 -   1446407 acagtgc----aataa-aac-----acaa-aTAGC-ATTCCAACAGTTTGGCAAGTGATGCG
i sarHar1.chr2_GL841277_random C 0 C 0
s macEug2.GL053575                 10763 50 +     74274 ACAGTGC----AATAA-AAC-----ACAA-ATAGC-ATTCCAACGGTTTGGCAAGTGATGCG
i macEug2.GL053575             C 0 C 0
s ornAna1.Contig22913               8158 54 +      9822 ACAGTGCACAAAACAA-AAC-----ACAA-ATAGC-ATTCCAACAGTTTGGCAAGTGATGCG
i ornAna1.Contig22913          C 0 C 0
s colLiv1.KB375452               1390633 50 +   4234233 acagtgc----aacat----aaa--acaa-aTAGC-ATTCCAACAGTTTGGCAAGTGATGAG
i colLiv1.KB375452             C 0 C 0
s falChe1.KB398121               1474461 53 +   3546035 acagtgc----aatgt-aacaaa--acaa-aTAGC-ATTCCAACAGTTTGGCAAGTGATGAG
i falChe1.KB398121             C 0 C 0
s falPer1.KB390921               1612400 53 +   3698665 acagtgc----aatgt-aacaaa--acaa-aTAGC-ATTCCAACAGTTTGGCAAGTGATGAG
i falPer1.KB390921             C 0 C 0
s ficAlb2.chrZ                  55057562 53 +  59856998 acagtgc----aaagt-aaaaaa--cCAG-ATAGC-ATTCCAACAGTTTGGCAAGTGATGAA
i ficAlb2.chrZ                 C 0 C 0
s zonAlb1.KB913240                788136 53 -    852449 acagtgc----aacgt-aaaaaa--acaa-aTAGC-ATTCCAACAGTTTGGCAAGTGATGAG
i zonAlb1.KB913240             C 0 C 0
s geoFor1.JH739942               1280044 53 +   5104860 acagtgc----aacgt-aaaaaa--acaa-atatc-aTTCCAACAGTTTGGCAAGTGATGAG
i geoFor1.JH739942             C 0 C 0
s taeGut2.chrZ                  13216690 54 +  72861351 acagtgc----aatgtaaaaaaa--acaa-aTAGC-ATTCCAACAGTTTGGCAAGTGATGAG
i taeGut2.chrZ                 C 0 C 0
s pseHum1.KB221303                460251 53 -   1055857 acagtgc----aacat-aaaaaa--ccaa-aTAGC-GTTCCAACAGTTTGGCAAGTGATGAG
i pseHum1.KB221303             C 0 C 0
s melUnd1.JH556568               2079629 54 +   4296882 acagtgc----aactt-aacaaa--acaa-aTAGCAATTCCAACAGTTTGGCAAGTGATGAG
i melUnd1.JH556568             C 0 C 0
s amaVit1.AOCU01161969                70 53 +       293 acaGTGC----AACTT-AACAAA--ACAA-ATAGC-ATTCCAACAGTTTGGCAAGTGATGAG
i amaVit1.AOCU01161969         C 0 C 0
s anaPla1.KB742960                140538 53 +    531124 acagtgc----aatgt-aacaaa--acaa-atagc-atTCCAACAGTTTGGCAAGTGATGAG
i anaPla1.KB742960             C 0 C 0
s galGal4.chrZ                  23195031 53 -  82363669 acagtgc----aacat-aacaaa--acaa-atagc-ATTTCAACAGTTTGGCAAGTGATGAG
i galGal4.chrZ                 C 0 C 0
s melGal1.chrZ                  62955805 52 +  81011772 acagtgc----aacat-aacaaa--acaa-aT-GC-ATTTCAACAGTTTGGCAAGTGATGAG
i melGal1.chrZ                 C 0 C 0
s allMis1.JH737334                 62494 50 -    565068 ACAGTGC----AACAT----AAA--ACAA-ATAGC-ATTCCAACAGTTTGGCAAGTGATGAG
i allMis1.JH737334             C 0 C 0
s cheMyd1.KB497515               3640712 52 +   9092468 acagtac----aa----aacaaaacacag-atagC-TCTCCAAGGGTTTGGCAAGTGATGAG
i cheMyd1.KB497515             C 0 C 0
s chrPic2.chrUn_KK082917v1      12457342 55 -  13974604 aCAGTGC----AACAT-AACAAAACACAC-ATAGC-TTTTCAACGGTTTGGCAAGTGATGAG
i chrPic2.chrUn_KK082917v1     C 0 C 0
s pelSin1.JH211373               2649612 55 -   4257854 acagtGC----AACAT-AACAAAACACAC-ATAGC-ATTCCAACAGTTTGGCAAGTGATGAG
i pelSin1.JH211373             C 0 C 0
s apaSpi1.KB928558               3294996 55 -   3719163 acaGTGC----AACAT-AACAAAACACAC-ATAGC-ATTCCAACAGTTTGGCAAGTGATGAG
i apaSpi1.KB928558             C 0 C 0
s anoCar2.chr2                  23372134 51 + 199619895 gCAGTGC----AACAT-A--AAC--ACAA-ATAGC-ATTTCAACATTTTGGCAAGTGATGAG
i anoCar2.chr2                 C 0 C 0
s xenTro7.KB021649             178198538 52 - 215906545 ACAGTGC----AACAT-AAAAAC--ACCA-ATAGC-ATTCCAA-GGTTTGGCAAGTAATGAG
i xenTro7.KB021649             C 0 C 0
s latCha1.JH128805                273116 56 -    360428 ACAGTGC----AATTT-ATTGAAACACAACATAAC-TTTCCAACAGTTTGGCAAGTGACGAG
i latCha1.JH128805             N 0 C 0
e odoRosDiv1.KB229312             750185  2 -   2017862 I
e canFam3.chr16                 18192716  0 -  59632846 C
e felCat8.chrB1                 20474662 206 + 206538554 I
e oviAri3.chr26                 17845457 46 +  44077779 I
e bosTau8.chr27                 18218766 205 +  45407902 I
e panHod1.KE114653               1503331 46 -   2937107 I
e capHir1.chr27                 17930931 46 +  44118849 I
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.KE027501                  2856  0 +     16385 I
e astMex1.KB882082               3904961 703 -   8876373 T
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e equCab2.chr27                 18745073 63 -  39960074 I
e orcOrc1.KB316932               3016891  0 -  10937097 C
e rheMac3.chr8                  61650881 41461 + 150158102 I
e macFas5.chr8                  58323911 42259 + 146850525 I
e chlSab2.chr8                  53249873 36839 + 139301422 I
e panTro4.chr8                  54977249 47550 + 143986469 I

a score=3324372.000000
s hg38.chr8_KI270814v1_alt         71592 102 +    141812 TTCATCTGGGATTAAGTAG------TTTTAGGCAGTCAGTAACAAAATGCTGTTCTGCTG-TCATAGTAGAAAGGCAGCACA-TTCTT--AAA---AGG-----AACC---AAGAAGAC-TACA
s ponAbe2.chr8                  59041182 101 + 153482349 TTCATCTGGGATTAAGTAG------TTTTAGGCAGTCAGTAACAAAATGCTGTTCTGCTG-TCATAGTAGAA-GGCAGCACA-TTCTT--AAA---AGG-----AACC---AAGAAGGC-TACA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48114851 102 + 100215132 TTCATCTGGGATTAAGTAG------TTTTAGGCAGTCAGTAACAAAATGCTGTTCTGCTG-TCATAGTAGAAAGGCAGCACA-TTCTT--AAA---AGG-----AACC---AAGAAGAT-TACA
i nomLeu3.chr16                C 0 C 0
s calJac3.chr3                 190755428 102 - 190850796 TTCACCTGAGATTAAGTAG------TTTTAGGCAGTTAGTAACAAAATGCTGCTTTGCTG-TCACAGTAGAAAGGCAACAAA-TTCTT--CAA---AGA-----AATC---AAGAAGGT-TGCA
i calJac3.chr3                 C 0 I 1172
s saiBol1.JH378165              14119017 102 -  14256875 TTCACCTGAGATTAAGTAG------TTTCAGGCGGTCAGTAACAAAATGCTGCTTTCCTC-TCACAGTAGAAAGGCAACAAA-TTTTT--CAA---AGA-----AATC---AAGAAGGT-TGCA
i saiBol1.JH378165             C 0 C 0
s monDom5.chr3                 315954245 102 - 527952102 TTCACCTGAGATTAAGTGA------TTTTAGGCAGTCTGTAACAAAATGCTGCTTTGCTA-TAATAGTAGAAAGGCAACACA-TTCTC--AAA---AGA-----AATC---AAGAAAGT-TATA
i monDom5.chr3                 C 0 I 2
s sarHar1.chr2_GL841277_random    378676 102 -   1446407 TTCAcctgagattaagtga------ttttagGCAGTCTGTAACAAAATGCTGCTTTGCTG-TAATAGTAGAAAGGCAACACA-TTCTT--AAA---ATA-----AATC---AAGAAGGT-TATA
i sarHar1.chr2_GL841277_random C 0 I 2
s macEug2.GL053575                 10813 102 +     74274 TTCACCTGAGATTAAGTGA------TTTTAGGCAGTCTGTAACAAAATGCTGCTTTGCTG-TAATAGTAGAAAGGCAACACA-TTCTT--AAA---ATA-----AATC---AAGAAGGT-TATA
i macEug2.GL053575             C 0 I 2
s ornAna1.Contig22913               8212 103 +      9822 TTCACCTGAGATTAAGTGA------TTTTAGGCAGTCTGTAACAAAATGCTGCTTTGCTG-TAATAGTAGAAAGGCAACAAA-TTCTC--AAA---AGA-----AATC---AAGAAGGTATACA
i ornAna1.Contig22913          C 0 C 0
s colLiv1.KB375452               1390683 104 +   4234233 TTCACCTGAGATTAAGTGA-----TTTTTAGGCAGTCTGTAACAAAATGCTGCGTTGCGA-TAATAGTAGAAAGGCAACaaa-ttctt--aaa---aga-----aatc---aagaagGTATACA
i colLiv1.KB375452             C 0 C 0
s falChe1.KB398121               1474514 104 +   3546035 TTCACCTGAGATTAAGTGA-----TTTTTAGGCAGTCTGtaacaaaatgctgctttgcaa-tAATAGTAGAAAGGCAACaaa-ttctt--aaa---aga-----aatc---aagaagtTACACA
i falChe1.KB398121             C 0 C 0
s falPer1.KB390921               1612453 104 +   3698665 TTCACCTGAGATTAAGTGA-----TTTTTAGGCAGTCTGtaacaaaatgctgctttgcgA-TAATAGTAGAAAGGCAACaaa-ttctt--aaa---aga-----aatc---aagaagtTATACA
i falPer1.KB390921             C 0 C 0
s ficAlb2.chrZ                  55057615 104 +  59856998 TTCACCTGAGATTAAGTGA-----TTTTTAGGCAGTCTGtaacaaaatgctgctttgcgA-TAATAGTAGAAAGGCAACAAa-ttctt--aaa---aga-----aatc---aagaaagTATACA
i ficAlb2.chrZ                 C 0 C 0
s zonAlb1.KB913240                788189 104 -    852449 TTCACCTGAGATTAAGTGA-----TTTTTAGGCAGTCTGtaacaaaatgctgctttgcgA-TAATAGTAGAAAGGCAACAAA-TTctt--aaa---aga-----aatc---aagaaagtATACA
i zonAlb1.KB913240             C 0 C 0
s geoFor1.JH739942               1280097 104 +   5104860 TTCACCTGAGATTAAGTGA-----TTTTTAGGCAGTCTGtaacaaaatgctgctttgcgA-TAATAGTAGAAAGGCAACAAa-ttctt--aaa---aga-----aatc---aagaaagtATACA
i geoFor1.JH739942             C 0 C 0
s taeGut2.chrZ                  13216744 104 +  72861351 TTCACCTGAGATTAAGTGA-----TTTTTAGGCAGTCTGTAACAAAATGCTGCTTTGCGA-TAATAGTAGAAAGGCAACAAA-TTCTT--AAA---AGA-----AATC---AAGAAAGTATACA
i taeGut2.chrZ                 C 0 C 0
s pseHum1.KB221303                460304 104 -   1055857 TTCACCTGAGATTAAGTGA-----TTTTTAGGCAGTCTGTaacaaaatgctgctttgcGA-TAATAGTAGAAAGGCAACAAA-TTctt--aaa---aga-----aatc---aagaaagTATACA
i pseHum1.KB221303             C 0 C 0
s melUnd1.JH556568               2079683 105 +   4296882 TTCACCTGAGATTAAGTGA-----TTTTTAGGCAGTCTGtaacaaaatgctgctttgcgGTTTATAGTAGAAAGGCAACAAA-TTCTT--AAA---AGT-----AATC---ATGAAGGTATACA
i melUnd1.JH556568             C 0 C 0
s amaVit1.AOCU01161969               123 105 +       293 TTCACCTGAGATTAAGTGA-----TTTTTAGGCAGTCTGtaacaaaatgctgctttgcgGTTTATAGTAGAAAGGCAACAAA-TTCTT--AAA---AGT-----AATC---AAGAAGGTATACA
i amaVit1.AOCU01161969         C 0 C 0
s araMac1.AOUJ01470298                 1 104 -       895 TTCATCTGAGATTAAGTGA-----TCTTTAGGCAGTCTGTAATAAAacattgctttgaaa-taatAGAAGAAAGACAACAAg-ttctt--aaa---aga-----aatc---aagaaggTATACA
i araMac1.AOUJ01470298         n 0 C 0
s anaPla1.KB742960                140591 105 +    531124 TTCACCTGAGATTAAGTGA----TTTTTTAGGCAGTCTGtaacaaaatgctgctttgcgA-TAATAGTAGAAAGGCAACAAa-ttctt--aaa---aga-----aatc---aagaagGAATATA
i anaPla1.KB742960             C 0 C 0
s galGal4.chrZ                  23195084 103 -  82363669 TTCACCTGAGATTAAGTGA-----TTTTTAGGCAGTCTGtaacaaaatgctgctttgcGA-TAATAGTAGAAAGGCAACAAA-CTCTT---AA---AGA-----AATC---AAGAAGGTATACA
i galGal4.chrZ                 C 0 C 0
s melGal1.chrZ                  62955857 104 +  81011772 TTCACCTGAGATTAAGTGA----TTTTTTAGGCAGTCTGTAACAAAATGCTGCTTTGCGA-TAATAGTAGAAAGGCAACAAA-CTCTT---AA---AGA-----AATC---AAGAAGGTATACA
i melGal1.chrZ                 C 0 C 0
s allMis1.JH737334                 62544 109 -    565068 TTCACCTGAGATTAAGTGATTTTTTTTTTAGGCAGTCTGTAACAAAATGCTGCTTTGCGG-TAATAGTAGAAAGGCAACAAA-TTCTT--AAA---AGA-----AATC---AAGAAAGTATACA
i allMis1.JH737334             C 0 C 0
s cheMyd1.KB497515               3640764 101 +   9092468 TTCACCTGAGATTAAGTGA------TTTTAGGCAGTCTGTAACAAAATGCTTCTTTGCGG-TAATAGTAGAAAGGCAACAAA-TTCTT----A---AGA-----AATC---AAGAAGGTATACA
i cheMyd1.KB497515             C 0 C 0
s chrPic2.chrUn_KK082917v1      12457397 103 -  13974604 TTCACCTGAGATTAAGTGA------TTTTAGGCAGTCTGTAACAAAATGCTTCTTTGCGG-TAATAGTAGAAAGGCAACAAA-TTCTT--AAA---AGA-----AATC---AAGAAGGTATACA
i chrPic2.chrUn_KK082917v1     C 0 C 0
s pelSin1.JH211373               2649667 105 -   4257854 TTCACCTGAGATTAAGTGA----TTTTTTAGGCAGTCTGTAACAAAATGCTTCTTTGCGG-TAATAGTAGAAAGGCAACAAA-TTCTT--AAA---AGA-----AATC---AAGAAGGTATACA
i pelSin1.JH211373             C 0 C 0
s apaSpi1.KB928558               3295051 106 -   3719163 TTCACCTgagattaagtga---tttttttAGGCAGTCTGTAACAAAATGCTTCTTTGCGG-TAATAGTAGAAAGGCAACAAA-TTCTT--AAA---AGA-----AATC---AAGAAGGTATACA
i apaSpi1.KB928558             C 0 C 0
s anoCar2.chr2                  23372185 105 + 199619895 TTCACCTGAGATTAAGTGA------TTTTAGGCAGTCTGTAACAAAATTCTTCTTTGTGG-TAATAGTAGAAAGGCAACGAA-TTCTTAAAAA---AGG-----AATC---AAGAATGTATATA
i anoCar2.chr2                 C 0 C 0
s xenTro7.KB021649             178198590 113 - 215906545 TTCTCCTGAGTTTAAGTGA-----TTTGTAGGAAGTCTGTAACAAAATTCTGCTTGGGGG-CGACAGTAAAAAGGCAACAAG--TCTG--AAATTTAGATGTACAATCTTGATGAGAGT-TTCA
i xenTro7.KB021649             C 0 I 2
s latCha1.JH128805                273172  93 -    360428 TTCACCTGAG-------TG------TTATAAGCAGTCCGTAACATAACGCTGCTCTGTGG-TTATAGTAGAAAGGCAACAAAACGCTT--ATA---ATG-----GAAT---AAG----TATACA
i latCha1.JH128805             C 0 C 0
e odoRosDiv1.KB229312             750185   2 -   2017862 I
e canFam3.chr16                 18192716   0 -  59632846 C
e felCat8.chrB1                 20474662 206 + 206538554 I
e oviAri3.chr26                 17845457  46 +  44077779 I
e bosTau8.chr27                 18218766 205 +  45407902 I
e panHod1.KE114653               1503331  46 -   2937107 I
e capHir1.chr27                 17930931  46 +  44118849 I
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e astMex1.KB882082               3904961 703 -   8876373 T
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e equCab2.chr27                 18745073  63 -  39960074 I
e orcOrc1.KB316932               3016891   0 -  10937097 C
e rheMac3.chr8                  61650881 41461 + 150158102 I
e macFas5.chr8                  58323911 42259 + 146850525 I
e chlSab2.chr8                  53249873 36839 + 139301422 I
e panTro4.chr8                  54977249 47550 + 143986469 I

a score=377577.000000
s hg38.chr8_KI270814v1_alt         71694 44 +    141812 CTCTTGGCAAAGTC---TC-TTA-----TTAGC---------TTTCTCC---TATC-----TCTT--CTCCC---------------------
s ponAbe2.chr8                  59041283 44 + 153482349 TTCTTGGCAAAGTC---TC-TTA-----TTAGC---------TTTCTCC---TATC-----TCTT--CTCCC---------------------
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48114953 44 + 100215132 ATCTTGGCAAAGTC---TC-TTA-----TTAGC---------TTTCTCC---TATC-----TCTT--CTCCC---------------------
i nomLeu3.chr16                C 0 C 0
s saiBol1.JH378165              14119119 47 -  14256875 ATCTTGATAAAGTT---TC-TCA-----TTATC---------TTCCTCCTCTTATC-----TCTT--TTCTT---------------------
i saiBol1.JH378165             C 0 C 0
s monDom5.chr3                 315954349 41 - 527952102 ATCTTGACCA-------TC-TCA-----TGAGT---------TTTCTCC---TCCT-----CTTCC-CCCCC---------------------
i monDom5.chr3                 I 2 C 0
s sarHar1.chr2_GL841277_random    378780 35 -   1446407 ATCTTGACAG-------TT-TCA-----Tgagt---------tttctca---tcat-----tttt----------------------------
i sarHar1.chr2_GL841277_random I 2 C 0
s macEug2.GL053575                 10917 40 +     74274 ATCTGGACAG-------TC-TCA-----AGAGT---------TTTCTCA---TCTT-----TTTT--TTTCC---------------------
i macEug2.GL053575             I 2 C 0
s ornAna1.Contig22913               8315 48 +      9822 GTCTTGACAGAGTC---TC-TTA-----TTAGC---------TTCCTCCTGTTATC-----TTTTT-TTTCC---------------------
i ornAna1.Contig22913          C 0 C 0
s colLiv1.KB375452               1390787 45 +   4234233 ATCTTGATGAAGTC---TATTTA-----GTTTC---------TTTCTAT---TAAC-----TCAC--CACCC---------------------
i colLiv1.KB375452             C 0 I 29
s falChe1.KB398121               1474618 44 +   3546035 ATCTTGATGAAGTC---TA-TTA-----GTTTC---------TTTCTAC---TAAc-----tctc--caccc---------------------
i falChe1.KB398121             C 0 I 29
s falPer1.KB390921               1612557 44 +   3698665 ATCTTGATGAAGTC---TA-TTA-----GTTTC---------TTTCTAC---TAAc-----tctc--caccc---------------------
i falPer1.KB390921             C 0 I 29
s ficAlb2.chrZ                  55057719 44 +  59856998 ATCTTGATGAAGTC---TA-TTA-----GTTTC---------TTTCTAT---TAAT-----TCTT--CACCC---------------------
i ficAlb2.chrZ                 C 0 I 30
s zonAlb1.KB913240                788293 44 -    852449 ATCTTGACAAAGTC---TA-TTA-----GTTTC---------TTTCTAT---TAAC-----TCCT--CACCC---------------------
i zonAlb1.KB913240             C 0 I 30
s geoFor1.JH739942               1280201 46 +   5104860 ATCTTGACGAAGTC---TA-TTA-----GTTTC---------TTTCTAT---TAAC-----TCTTCACACCC---------------------
i geoFor1.JH739942             C 0 I 30
s taeGut2.chrZ                  13216848 41 +  72861351 ATCTTGACAAAGTC---TA-TTA-----GTTTC---------TTTC------TAAC-----TCTT--CACCC---------------------
i taeGut2.chrZ                 C 0 I 31
s pseHum1.KB221303                460408 44 -   1055857 ATCTTGATGAAGTC---TA-TTA-----GTTTC---------TTTCTAT---TAAC-----TCTT--CACCC---------------------
i pseHum1.KB221303             C 0 I 31
s melUnd1.JH556568               2079788 44 +   4296882 ATCTTGATGAAGTC---TA-TTA-----GTTTC---------TTCCTAT---TAAC-----TCTT--CACCC---------------------
i melUnd1.JH556568             C 0 I 30
s amaVit1.AOCU01161969               228 44 +       293 ATCTTGATGAAgtc---ta-tta-----ttttc---------tttctat---taac-----TCTC--CACCC---------------------
i amaVit1.AOCU01161969         C 0 n 0
s araMac1.AOUJ01470298               105 47 -       895 ATTGTGACAAAGTCTCTTA-TTA-----GTTTT---------CTTCCAT---TATC-----TCTT--CCCCC---------------------
i araMac1.AOUJ01470298         C 0 I 23
s anaPla1.KB742960                140696 44 +    531124 ATCTCAACAAAGTC---TA-TTA-----GTTTC---------CTTCTGG---TATC-----TCTC--CATCC---------------------
i anaPla1.KB742960             C 0 I 35
s galGal4.chrZ                  23195187 42 -  82363669 ATCTTGACAAAGTC------TTA-----GTCTC---------CTTCTGT---TATC-----TCTC--CATCC---------------------
i galGal4.chrZ                 C 0 I 34
s melGal1.chrZ                  62955961 44 +  81011772 ATCTTGACAAAGTC---TG-TTA-----GTCTC---------CTTCTGT---TATC-----TCTC--CATCC---------------------
i melGal1.chrZ                 C 0 I 34
s allMis1.JH737334                 62653 44 -    565068 ATCTTGACAAAGTCTCTTA-TTA-----GTTTC---------CTTCTGT---TATC-----TTCC--CC------------------------
i allMis1.JH737334             C 0 I 22
s cheMyd1.KB497515               3640865 49 +   9092468 ATCTTGCAGAAGTC---TA-TTA-----TTCTC---------cttctgt---gttttttccccca--tataa---------------------
i cheMyd1.KB497515             C 0 I 11
s chrPic2.chrUn_KK082917v1      12457500 47 -  13974604 ATCTTGCAGAAGTC---TA-TTA-----TTctc---------ctgttat---ttttttt--tcca--tataa---------------------
i chrPic2.chrUn_KK082917v1     C 0 I 11
s pelSin1.JH211373               2649772 44 -   4257854 ATCTTGCAGAAGTC---TC-TTC-----TTCTT---------CTGTTAT---TTTT-----TCCA--CATTA---------------------
i pelSin1.JH211373             C 0 I 11
s apaSpi1.KB928558               3295157 44 -   3719163 ATCTTGCAGAAGTC---TC-TTC-----TTCTT---------CTGTTAT---TTTT-----TCCA--CATTA---------------------
i apaSpi1.KB928558             C 0 I 11
s anoCar2.chr2                  23372290 48 + 199619895 ATCTTGACAAAGAC---TC-CTATCGTTTCCTC---------TTTCTGT---TCAT-----TTTC--GCCT----------------------
i anoCar2.chr2                 C 0 I 18
s xenTro7.KB021649             178198705 44 - 215906545 CCCTTAGGTCTGTA---TA-TTA-----ATAACCCATTGAAATTGCTGC---TATT-------------------------------------
i xenTro7.KB021649             I 2 C 0
s latCha1.JH128805                273265 64 -    360428 ATCTTTTCAAAGTC----G-CTA-----CTTGT---------TTTCCCT---GTGA-----TCTC--AGTCCCTATAGTAATCTGTTGCTATT
i latCha1.JH128805             C 0 C 0
e odoRosDiv1.KB229312             750185  2 -   2017862 I
e canFam3.chr16                 18192716  0 -  59632846 C
e felCat8.chrB1                 20474662 206 + 206538554 I
e oviAri3.chr26                 17845457 46 +  44077779 I
e bosTau8.chr27                 18218766 205 +  45407902 I
e panHod1.KE114653               1503331 46 -   2937107 I
e capHir1.chr27                 17930931 46 +  44118849 I
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e astMex1.KB882082               3904961 703 -   8876373 T
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e calJac3.chr3                 190755530 1172 - 190850796 I
e equCab2.chr27                 18745073 63 -  39960074 I
e orcOrc1.KB316932               3016891  0 -  10937097 C
e rheMac3.chr8                  61650881 41461 + 150158102 I
e macFas5.chr8                  58323911 42259 + 146850525 I
e chlSab2.chr8                  53249873 36839 + 139301422 I
e panTro4.chr8                  54977249 47550 + 143986469 I

a score=4288002.000000
s hg38.chr8_KI270814v1_alt         71738 153 +    141812 CAACCACACT---------------------GTAAACTGC---AA---AACATACAGCAAAAAGAATTGGCTTAAAGGCAATTGATGTTTGT--AAATAAATCCACAATAGGATCCAAGCTAAAGAGGTGAT-ACATG-GTCAGCC-TAGTAGGACAATTCAGAGCATGTGCAT-ATGCAAGTAAA
s ponAbe2.chr8                  59041327 153 + 153482349 CAACCACACT---------------------GTAAACTGC---AA---AACATACAGCAAAAAGAATTGGCTTAAAGGCAGTTGATGTTTGT--AAATAAATCCACAATAGGATCCAAGCTAAAGAGGTGAT-ACATG-GTCAGCC-TAGTAGGACAATTAGGAGCATGTGCAT-ATGCAAGTAAA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48114997 153 + 100215132 CAACCACACT---------------------GTAAACTGC---AA---AACATACAGAGAAAAGAATTGGCTTAAAGGCAATTCATGTTTGT--AAATAAAGCCACAATAGGATCCAAGCTAAAGAGGTGAT-ACATG-ATCAGCC-TAGTAGGACAATTCGGAGTATGTGCAT-ATGCAAGTAAA
i nomLeu3.chr16                C 0 C 0
s saiBol1.JH378165              14119166 150 -  14256875 CCCTCACATT---------------------ATCTATTGC---AA---AACATACAGCAGAAAGGA-TGGCTTGAAGGCAACTGATGTTTGT--AAATAAATCCACAATGGGATCCAAGCTGAAGAGGAGA--ACATG--TCAGCC-TAGTAGGGCAACTCTCAATATGTGCAT-ACATTGGTAAA
i saiBol1.JH378165             C 0 C 0
s monDom5.chr3                 315954390 173 - 527952102 ACCCCACATTGGTGTTTGCTTATCTACTACAGTAGGCTGC---AA---AACATACAGCAAGAAGGATTGGCTTGAAGGCATTTGATGTTTGT--AAATAAATCCACAATAGGATCCAAGCTGAAGAGGTGAT-ACATG-GTCAGCC-TAGAAGGACAATTCTGAGCATGTGC-T-ACACAGGTAAA
i monDom5.chr3                 C 0 C 0
s sarHar1.chr2_GL841277_random    378815 173 -   1446407 cccCCACCTTGGTGTTTGCTTATCTACTACAGTAGGCTGC---AA---AACATACAGCAAAAAGGATTGGCTTGAAGGCATTTGATGTTTGT--AAATAAATCCACAATTGGATCCAAGCTGAAGAGGTGAT-ATATG-GTCAGCC-TAGAAGGACAATTCTGAGCATGTGC-T-ACACAGGTAAA
i sarHar1.chr2_GL841277_random C 0 C 0
s macEug2.GL053575                 10957 173 +     74274 TCCCTACATTGGTGTTTGCTTATCTACTACAGTAGGCTGC---AA---AACATACAGCAAAAAGGGTTGGCTTGAAGGCATTTGATGTTTGT--AAATAAATCCACAATTGGATCCAAGCTGAAGAGGTGAT-ACATG-GTCAGCC-TAGAAGGACAATTCTGAGCATGTGC-T-ACACAGGTAAA
i macEug2.GL053575             C 0 C 0
s ornAna1.Contig22913               8363 171 +      9822 CCTACATATC---TGTTGCTTATCTACTACAGTAGGCTGC---AA---AACATACAGCACGGAGGATTGGCTTGAAGGCGTCTGATGTTTGT--AAATCAATCCACAAAAGGATCCAAGCTGAAGAGGTGAT-ATAAA-GTCAGCC-TAGGAGGACAATTCTGAGCATGTGCAT-ATGCAGGTAAA
i ornAna1.Contig22913          C 0 C 0
s colLiv1.KB375452               1390861 151 +   4234233 -----------------------CTACTACAGTAGGCTGA---AA---AACATACAGCAAGAAGGATTGGCTTGAAGGCATTTGATGTTTGT--AAATAAATCCACAATAGGATCCAAGCTGGAGAGGTGAT-ACATG-ATCAGCC-TACTAGGACAAATCTGAGCATGTGCAT-ATGCAGGTAAA
i colLiv1.KB375452             I 29 C 0
s falChe1.KB398121               1474691 152 +   3546035 -----------------------CTACTACAGTAGGCTGC---AA---AACGTACAGCAAGAAGGATTGGCTTGAAGGCATTTGATGTTTGT--AAATAAATCCACAACAGGATCCAAGCTGAAGAGGTGAT-ACATG-ATCAGCC-TACGAGGACAATTCTGAGCATGTGCATAATGCATGTAAA
i falChe1.KB398121             I 29 C 0
s falPer1.KB390921               1612630 152 +   3698665 -----------------------CTACTACAGTAGGCTGC---AA---AACGTACAGCAAGAAGGATTGGCTTGAAGGCATTTGATGTTTGT--AAATAAATCCACAACAGGATCCAAGCTGAAGAGGTGAT-ACATG-ATCAGCC-TACGAGGACAATTCTGAGCATGTGCATAATGCATGTAAA
i falPer1.KB390921             I 29 C 0
s ficAlb2.chrZ                  55057793 151 +  59856998 -----------------------CTACTACAGTAGGCTGC---AA---AACATACAGCAAGAAGGATTGGCTTGAAGGCATTTGATGTTTGT--AAATAAATCCACAATAGGATCCAAGCTGAAGAGGTGAT-ACATG-ATCAGCC-TACTAGGACAATTCTGAGCATGTGCAT-ATGCAGGTAAA
i ficAlb2.chrZ                 I 30 C 0
s zonAlb1.KB913240                788367 152 -    852449 -----------------------CTACTACAGTAGGCTGC---AA---AACATACAGCAAGGAGGATTGGCTTGAAGGCATTTGATGTTTGTA-AAATAAATCCACAATAGGATCCAAGCTGAAGAGGTGAT-ACATG-ATCAGCC-TACTAGGACAATTCTGAGCATGTGCAT-ATGTAGGTAAA
i zonAlb1.KB913240             I 30 C 0
s geoFor1.JH739942               1280277 152 +   5104860 -----------------------CTACTACAGTAGGCTGC---AA---AACATACAGCAAGAAGGATTGGCTTGAAGGCATTTGATGTTTGTA-AAATAAATCCACAATAGGATCCAAGCTGAAGAGGTGAT-ACATG-ATCAGCC-TACTAGGACAATTCTGAGCATGTGCAT-ATGCAGGTAAA
i geoFor1.JH739942             I 30 C 0
s taeGut2.chrZ                  13216920 152 +  72861351 -----------------------TTACTACAGTAGGCTGC---AA---AACATACAGCAAGAAGGATTGGCTTGAAGGCATTTGATGTTTGTA-AAATAAATCCAGAATAGGATCCAAGCTGAAGAGGTGAT-ACATG-ATCAGCC-TACTAGGACAATTCTGAGCATGTGCAT-ATGCAGGTAAA
i taeGut2.chrZ                 I 31 C 0
s pseHum1.KB221303                460483 151 -   1055857 -----------------------CTACTACAGTAGGCTGC---AA---AACATACAGCAAGAAGGATTGGCTTGAAGGCATTTGATGTTTGT--AAATAAATCCACAACAGGGTCCAAGCTGAAGAGGTGAT-ACATG-ATCAGCC-TACTAGGACAATTCTGAGCATGTGCAT-ATGCAGGTAAA
i pseHum1.KB221303             I 31 C 0
s melUnd1.JH556568               2079862 151 +   4296882 -----------------------CTACTACAGTAGGCTGC---AA---AACATACAGCAAAAAGGATTGGCTTGAAGGCATTTGATGTTTGT--AAATAAATCCACAATAGGATCCAAGCTGAAGAGGTGAT-ACACG-ATCAGCC-TACTAGGACAATTCTGAGCATGTGCAT-ATGCAGGTAAA
i melUnd1.JH556568             I 30 C 0
s araMac1.AOUJ01470298               175 151 -       895 -----------------------CTACTACACTTGGCTGC---AA---AACATACAGCAAGAAGGATTGGCTTGAAGGCATGTAATGTTTGT--AAATAAATCCACAGTAGCATCAAAGCTGAAGAGAGGAG-ACACA-ATCAGCT-TACTAGGACAACTCTGAGCATGTGCAT-ATGCAAGTAAA
i araMac1.AOUJ01470298         I 23 C 0
s anaPla1.KB742960                140775 151 +    531124 -----------------------CTACTACAGTAGGCTGC---AA---AACATACAGCAAGAAGGATTGGCTTGAAGGCATTTGATGTTTGT--AAATAAATCCACAACAGGATCCAAGCTGAAGAGGTGAT-ACATG-ACCAGCC-TACTAGGACAATTCTGAGCATGTGCAT-ATGCAGGTAAA
i anaPla1.KB742960             I 35 C 0
s galGal4.chrZ                  23195263 151 -  82363669 -----------------------CTACTACAGTAGGCTGC---AA---AACATACAGCAAGAAGGATTGGCTTGAAGGCATTTGATGTTTGT--AAATAAATCCACGACAGGATCCAAGCTGAAGAGGTGAT-ACGTG-ACCAGCC-TACTAGGACAATTCTGAGCATGTGCAT-ATGCAGGTAAA
i galGal4.chrZ                 I 34 C 0
s melGal1.chrZ                  62956039 150 +  81011772 -----------------------CTACTACAGTAGGCTGC---AA---AACATACAGCAAGAAGGATTGGCTTGAAGGCATTTGATGTTTGT--AAATAAATCCAGAACAGGATCCAAGCTGAAGAGGTGAT-ACATG-ACCAGCC-TACTA-GACAATTCTGAGCATGTGCAT-ATGCAGGTAAA
i melGal1.chrZ                 I 34 C 0
s allMis1.JH737334                 62719 151 -    565068 -----------------------CTACTACAGTAGGCTGC---AA---AACATACAGCAAGAAGGATTGGCTTGAAGGCATTTGATGTTTGT--AAATAAATCCACAACAGGATCCAAGCTGAAGAGGTGAT-ACATG-ATCAGCC-TACTAGGACAATTCTGAGCATGTGCAT-ATGCAGGTAAA
i allMis1.JH737334             I 22 C 0
s cheMyd1.KB497515               3640925 140 +   9092468 -----------------------CTACTACAGTAGGCTGC---AA---AACATACAGCAAGAAGGATTGGCTTGAAGGCATTTGATGTTCGT--AAATAAATCCAC-----------AGCTGAAGAGGTGAT-ACACG-ATCAGTC-TACTAGGACAATTCTGAGCATGTGCAT-ATGCAGGTAAA
i cheMyd1.KB497515             I 11 C 0
s chrPic2.chrUn_KK082917v1      12457558 141 -  13974604 -----------------------CTACTACAGTAGGCTGC---AA---AACATACAGCAAGAAGGATTGGCTTGAAGGCATTTGATGTTCGT--AAATAAATCCAC-----------AGCTGAAGAGGTGATAACATG-ATCAGTC-TACTGGAACAATTCTGAGCATGTGCAT-ACGTAGGTAAA
i chrPic2.chrUn_KK082917v1     I 11 C 0
s pelSin1.JH211373               2649827 150 -   4257854 -----------------------CTACTACAGTAGGCTGC---AA---AACATACAGCAAGAAGGATTGGCTTGAAGGCATTTGATGTTTGT---GATAAATCCACAATAGGATCCAAGCTGAAGAGGTGAT-AAATG-ATCAGCC-TACTAGGACAATTCTGAGCATGTGCAT-ATGCAGGTAAA
i pelSin1.JH211373             I 11 C 0
s apaSpi1.KB928558               3295212 150 -   3719163 -----------------------CTACTACAGTAGGCTGC---AA---AACATACAGCAAGAAGGATTGGCTTGAAGGCATTTGATGTTTGT---GATAAATCCACAATAGGATCCAAGCTGAAGAGGTGAT-AAATG-ATCAGCC-TACTAGGACAATTCTGAGCATGTGCAT-ATGCAGGTAAA
i apaSpi1.KB928558             I 11 C 0
s anoCar2.chr2                  23372356 142 + 199619895 -----------------------CTACTACAGTAGGCTGC---AA---AACATACAGCA---AGGATTGGCTTGAAGGCATTTGATGTTTGT---AATAAATCCACAACAGGATCCAAGCTGAAGAGGTGAT-GCATGAATCAGTCTTACTGGGACAATTCTGAGCAT-------ATGCAGG-AAA
i anoCar2.chr2                 I 18 C 0
s xenTro7.KB021649             178198749 145 - 215906545 -----------------------CTACTACAGTGGGCTGCCAAAC---AACATACAGCAGTAAGGATTAGTGTGAAGGCATTAGATGTTTTTAGAGACGAATCCATTGCTGAATCCAAGCTGA----------GAAGG---CAGCC-AGAGAGGACAATACTGTGCATGTTCAT-AAGTGGGTAAA
i xenTro7.KB021649             C 0 I 35
s latCha1.JH128805                273329 154 -    360428 -----------------------CTACTACAGTAGGCTGC---AAAACAACATACAGCAACAAGGATTGGCTTGAAGGCATTTGATGTTTGT--AACTTAAGCCACGATTGGATCCAAGCTGAAGAGGTGAT-GCATG-GTCAGCC-TGAGAAGACAATACTGAGCATGTGCAT-TTGTAGGTACA
i latCha1.JH128805             C 0 C 0
e odoRosDiv1.KB229312             750185   2 -   2017862 I
e canFam3.chr16                 18192716   0 -  59632846 C
e felCat8.chrB1                 20474662 206 + 206538554 I
e oviAri3.chr26                 17845457  46 +  44077779 I
e bosTau8.chr27                 18218766 205 +  45407902 I
e panHod1.KE114653               1503331  46 -   2937107 I
e capHir1.chr27                 17930931  46 +  44118849 I
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e astMex1.KB882082               3904961 703 -   8876373 T
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e amaVit1.AOCU01161969               272   0 +       293 I
e calJac3.chr3                 190755530 1172 - 190850796 I
e equCab2.chr27                 18745073  63 -  39960074 I
e orcOrc1.KB316932               3016891   0 -  10937097 C
e rheMac3.chr8                  61650881 41461 + 150158102 I
e macFas5.chr8                  58323911 42259 + 146850525 I
e chlSab2.chr8                  53249873 36839 + 139301422 I
e panTro4.chr8                  54977249 47550 + 143986469 I

a score=394768.000000
s hg38.chr8_KI270814v1_alt         71891 13 +    141812 GGCCAGACTATAT
s ponAbe2.chr8                  59041480 13 + 153482349 GGCCAGACTATAT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48115150 13 + 100215132 AGCCAGACTATAT
i nomLeu3.chr16                C 0 C 0
s saiBol1.JH378165              14119316 11 -  14256875 GTCTAGCCTAT--
i saiBol1.JH378165             C 0 C 0
s monDom5.chr3                 315954563 13 - 527952102 GTCCAGGCTACAT
i monDom5.chr3                 C 0 C 0
s sarHar1.chr2_GL841277_random    378988 13 -   1446407 GTCCAGgctacat
i sarHar1.chr2_GL841277_random C 0 C 0
s macEug2.GL053575                 11130 13 +     74274 GTCCAGGCTACAT
i macEug2.GL053575             C 0 C 0
s ornAna1.Contig22913               8534 13 +      9822 GTCCAGGCTACat
i ornAna1.Contig22913          C 0 C 0
s colLiv1.KB375452               1391012 13 +   4234233 GTCCAGgctacat
i colLiv1.KB375452             C 0 I 1
s falChe1.KB398121               1474843 13 +   3546035 GTCCAGGctacat
i falChe1.KB398121             C 0 I 1
s falPer1.KB390921               1612782 13 +   3698665 GTCCAGGCTAcgt
i falPer1.KB390921             C 0 I 1
s ficAlb2.chrZ                  55057944 13 +  59856998 GTCCAGGctacat
i ficAlb2.chrZ                 C 0 I 990
s zonAlb1.KB913240                788519 13 -    852449 GTCCAGGctacat
i zonAlb1.KB913240             C 0 I 16
s geoFor1.JH739942               1280429 13 +   5104860 GTCCAGGctacat
i geoFor1.JH739942             C 0 I 11
s taeGut2.chrZ                  13217072 13 +  72861351 GTCCAGGCTACAT
i taeGut2.chrZ                 C 0 I 18
s pseHum1.KB221303                460634 13 -   1055857 GTCCAGGctacat
i pseHum1.KB221303             C 0 I 28
s melUnd1.JH556568               2080013 13 +   4296882 GTCCAGGCTAcat
i melUnd1.JH556568             C 0 I 16
s araMac1.AOUJ01470298               326 13 -       895 GTCCAGGctacat
i araMac1.AOUJ01470298         C 0 I 16
s anaPla1.KB742960                140926 13 +    531124 GTCCAGGCTAcat
i anaPla1.KB742960             C 0 I 1
s galGal4.chrZ                  23195414 13 -  82363669 GTCCAGGCTACat
i galGal4.chrZ                 C 0 I 1
s melGal1.chrZ                  62956189 13 +  81011772 GTCCAGGCTACAT
i melGal1.chrZ                 C 0 I 1
s allMis1.JH737334                 62870 13 -    565068 GTCCAGGCTACAT
i allMis1.JH737334             C 0 I 1
s cheMyd1.KB497515               3641065 13 +   9092468 GTCCAGGCtacat
i cheMyd1.KB497515             C 0 I 1
s chrPic2.chrUn_KK082917v1      12457699 13 -  13974604 GTCCAGGCtacat
i chrPic2.chrUn_KK082917v1     C 0 I 1
s pelSin1.JH211373               2649977 13 -   4257854 GTCCAGGCtacat
i pelSin1.JH211373             C 0 I 1
s apaSpi1.KB928558               3295362 13 -   3719163 GTCCAGGCtacat
i apaSpi1.KB928558             C 0 I 1
s anoCar2.chr2                  23372498 13 + 199619895 GTCCAGActatat
i anoCar2.chr2                 C 0 I 8
s latCha1.JH128805                273483 13 -    360428 GTCCAggctacat
i latCha1.JH128805             C 0 I 9
e odoRosDiv1.KB229312             750185  2 -   2017862 I
e canFam3.chr16                 18192716  0 -  59632846 C
e felCat8.chrB1                 20474662 206 + 206538554 I
e oviAri3.chr26                 17845457 46 +  44077779 I
e bosTau8.chr27                 18218766 205 +  45407902 I
e panHod1.KE114653               1503331 46 -   2937107 I
e capHir1.chr27                 17930931 46 +  44118849 I
e xenTro7.KB021649             178198894 35 - 215906545 I
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e astMex1.KB882082               3904961 703 -   8876373 T
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e amaVit1.AOCU01161969               272  0 +       293 I
e calJac3.chr3                 190755530 1172 - 190850796 I
e equCab2.chr27                 18745073 63 -  39960074 I
e orcOrc1.KB316932               3016891  0 -  10937097 C
e rheMac3.chr8                  61650881 41461 + 150158102 I
e macFas5.chr8                  58323911 42259 + 146850525 I
e chlSab2.chr8                  53249873 36839 + 139301422 I
e panTro4.chr8                  54977249 47550 + 143986469 I

a score=-71090.000000
s hg38.chr8_KI270814v1_alt         71904 12 +    141812 -ATTTTT------T-----A--AACG
s ponAbe2.chr8                  59041493 12 + 153482349 -ATTTTT------T-----A--AATG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48115163 12 + 100215132 -ATTTTT------T-----A--AATG
i nomLeu3.chr16                C 0 C 0
s saiBol1.JH378165              14119327  1 -  14256875 -------------------------G
i saiBol1.JH378165             C 0 C 0
s monDom5.chr3                 315954576 18 - 527952102 -TAAATTAAAAAAA-----A--AATG
i monDom5.chr3                 C 0 C 0
s sarHar1.chr2_GL841277_random    379001 18 -   1446407 -taaataaaaaaaa-----a--aatg
i sarHar1.chr2_GL841277_random C 0 C 0
s macEug2.GL053575                 11143 18 +     74274 -TAAATTAAAAAAA-----A--AATG
i macEug2.GL053575             C 0 C 0
s ornAna1.Contig22913               8547 20 +      9822 -taaattaaaaaaa-----aataatG
i ornAna1.Contig22913          C 0 C 0
s colLiv1.KB375452               1391026 22 +   4234233 -aaattaaaaaaaaaaaa-a--aaag
i colLiv1.KB375452             I 1 C 0
s falChe1.KB398121               1474857 23 +   3546035 -aaattaaaaaaaaaaaaga--aaag
i falChe1.KB398121             I 1 C 0
s falPer1.KB390921               1612796 23 +   3698665 -aaattaaaaaaaaaaaaga--aaag
i falPer1.KB390921             I 1 C 0
s zonAlb1.KB913240                788548  5 -    852449 -------------------a--aaag
i zonAlb1.KB913240             I 16 C 0
s geoFor1.JH739942               1280453  5 +   5104860 -------------------a--aaag
i geoFor1.JH739942             I 11 C 0
s taeGut2.chrZ                  13217103  5 +  72861351 -------------------A--AAAG
i taeGut2.chrZ                 I 18 C 0
s pseHum1.KB221303                460675  5 -   1055857 -------------------a--aaag
i pseHum1.KB221303             I 28 C 0
s melUnd1.JH556568               2080042  5 +   4296882 -------------------a--aaag
i melUnd1.JH556568             I 16 C 0
s amaVit1.KB238281                     3  5 +      9836 -------------------a--aaaG
i amaVit1.KB238281             n 0 C 0
s araMac1.AOUJ01470298               355 12 -       895 ------------aataaaaa--aaag
i araMac1.AOUJ01470298         I 16 C 0
s anaPla1.KB742960                140940 18 +    531124 -aaattagaaaaga-----a--aaag
i anaPla1.KB742960             I 1 C 0
s galGal4.chrZ                  23195428 18 -  82363669 -aaattagaaaaga-----a--aaag
i galGal4.chrZ                 I 1 C 0
s melGal1.chrZ                  62956203 18 +  81011772 -AAATTAGAAAAGA-----A--AGAG
i melGal1.chrZ                 I 1 C 0
s allMis1.JH737334                 62884 18 -    565068 -AAATTAAAAAAAA-----A--AACG
i allMis1.JH737334             I 1 C 0
s cheMyd1.KB497515               3641079 17 +   9092468 -aaattaaaag-aa-----a--aaag
i cheMyd1.KB497515             I 1 C 0
s chrPic2.chrUn_KK082917v1      12457713 18 -  13974604 -aaattaaaagaaa-----a--aaag
i chrPic2.chrUn_KK082917v1     I 1 C 0
s pelSin1.JH211373               2649991 17 -   4257854 -aaattaaaag-aa-----a--aaag
i pelSin1.JH211373             I 1 C 0
s apaSpi1.KB928558               3295376 17 -   3719163 -aaattaaaag-aa-----a--aaag
i apaSpi1.KB928558             I 1 C 0
s anoCar2.chr2                  23372519 18 + 199619895 -tttttctaaataa-----a--aaaa
i anoCar2.chr2                 I 8 C 0
s latCha1.JH128805                273505 16 -    360428 ataattaaaaa--------a--aatg
i latCha1.JH128805             I 9 C 0
e odoRosDiv1.KB229312             750185  2 -   2017862 I
e canFam3.chr16                 18192716  0 -  59632846 C
e felCat8.chrB1                 20474662 206 + 206538554 I
e oviAri3.chr26                 17845457 46 +  44077779 I
e bosTau8.chr27                 18218766 205 +  45407902 I
e panHod1.KE114653               1503331 46 -   2937107 I
e capHir1.chr27                 17930931 46 +  44118849 I
e xenTro7.KB021649             178198894 35 - 215906545 I
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e astMex1.KB882082               3904961 703 -   8876373 T
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chrZ                  55057957 990 +  59856998 I
e calJac3.chr3                 190755530 1172 - 190850796 I
e equCab2.chr27                 18745073 63 -  39960074 I
e orcOrc1.KB316932               3016891  0 -  10937097 C
e rheMac3.chr8                  61650881 41461 + 150158102 I
e macFas5.chr8                  58323911 42259 + 146850525 I
e chlSab2.chr8                  53249873 36839 + 139301422 I
e panTro4.chr8                  54977249 47550 + 143986469 I

a score=301440.000000
s hg38.chr8_KI270814v1_alt         71916 11 +    141812 TCAGTGCATTT-
s ponAbe2.chr8                  59041505 11 + 153482349 TCAGTGCATTT-
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48115175 11 + 100215132 TCAGTGCATTT-
i nomLeu3.chr16                C 0 C 0
s saiBol1.JH378165              14119328 11 -  14256875 TTAATGCATTT-
i saiBol1.JH378165             C 0 C 0
s monDom5.chr3                 315954594 10 - 527952102 TCAGTGCA-TT-
i monDom5.chr3                 C 0 C 0
s sarHar1.chr2_GL841277_random    379019 10 -   1446407 tcagtgca-tt-
i sarHar1.chr2_GL841277_random C 0 C 0
s macEug2.GL053575                 11161 10 +     74274 TCAGTGCA-TT-
i macEug2.GL053575             C 0 C 0
s ornAna1.Contig22913               8567 11 +      9822 TCAGTGCATTT-
i ornAna1.Contig22913          C 0 C 0
s colLiv1.KB375452               1391048 10 +   4234233 tcagtgca-TT-
i colLiv1.KB375452             C 0 C 0
s falChe1.KB398121               1474880 10 +   3546035 tcagtgCA-TT-
i falChe1.KB398121             C 0 C 0
s falPer1.KB390921               1612819 10 +   3698665 tcagtgCA-TT-
i falPer1.KB390921             C 0 C 0
s zonAlb1.KB913240                788553 10 -    852449 tcagtgCA-TT-
i zonAlb1.KB913240             C 0 C 0
s geoFor1.JH739942               1280458 10 +   5104860 tcagtgca-TT-
i geoFor1.JH739942             C 0 C 0
s taeGut2.chrZ                  13217108 10 +  72861351 TCAGTGCA-TT-
i taeGut2.chrZ                 C 0 C 0
s pseHum1.KB221303                460680 10 -   1055857 tcagtgca-TT-
i pseHum1.KB221303             C 0 C 0
s melUnd1.JH556568               2080047 10 +   4296882 tcagtGCA-TT-
i melUnd1.JH556568             C 0 C 0
s amaVit1.KB238281                     8 10 +      9836 TCAGTGCA-TT-
i amaVit1.KB238281             C 0 C 0
s araMac1.AOUJ01470298               367 10 -       895 tcaatgcA-TT-
i araMac1.AOUJ01470298         C 0 C 0
s anaPla1.KB742960                140958 10 +    531124 tcagtgCA-TT-
i anaPla1.KB742960             C 0 I 30
s galGal4.chrZ                  23195446 10 -  82363669 tcagtGCA-TT-
i galGal4.chrZ                 C 0 I 24
s melGal1.chrZ                  62956221 10 +  81011772 TCAGTGCA-TT-
i melGal1.chrZ                 C 0 n 0
s allMis1.JH737334                 62902 10 -    565068 TCAGTGCA-TT-
i allMis1.JH737334             C 0 C 0
s cheMyd1.KB497515               3641096 10 +   9092468 tcagtgCA-TT-
i cheMyd1.KB497515             C 0 C 0
s chrPic2.chrUn_KK082917v1      12457731 10 -  13974604 tcagtgCA-TT-
i chrPic2.chrUn_KK082917v1     C 0 C 0
s pelSin1.JH211373               2650008 10 -   4257854 tcagtgCA-TT-
i pelSin1.JH211373             C 0 C 0
s apaSpi1.KB928558               3295393 10 -   3719163 tcagtGCA-TT-
i apaSpi1.KB928558             C 0 C 0
s anoCar2.chr2                  23372537 10 + 199619895 tcagtgcA-TT-
i anoCar2.chr2                 C 0 C 0
s xenTro7.KB021649             178198929 10 - 215906545 TTAGTGCA-TT-
i xenTro7.KB021649             I 35 I 1
s latCha1.JH128805                273521 11 -    360428 tcagtgca-gTT
i latCha1.JH128805             C 0 C 0
e odoRosDiv1.KB229312             750185  2 -   2017862 I
e canFam3.chr16                 18192716  0 -  59632846 C
e felCat8.chrB1                 20474662 206 + 206538554 I
e oviAri3.chr26                 17845457 46 +  44077779 I
e bosTau8.chr27                 18218766 205 +  45407902 I
e panHod1.KE114653               1503331 46 -   2937107 I
e capHir1.chr27                 17930931 46 +  44118849 I
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e astMex1.KB882082               3904961 703 -   8876373 T
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chrZ                  55057957 990 +  59856998 I
e calJac3.chr3                 190755530 1172 - 190850796 I
e equCab2.chr27                 18745073 63 -  39960074 I
e orcOrc1.KB316932               3016891  0 -  10937097 C
e rheMac3.chr8                  61650881 41461 + 150158102 I
e macFas5.chr8                  58323911 42259 + 146850525 I
e chlSab2.chr8                  53249873 36839 + 139301422 I
e panTro4.chr8                  54977249 47550 + 143986469 I

a score=336.000000
s hg38.chr8_KI270814v1_alt         71927 13 +    141812 -----TGTTGTGTTAAAA
s ponAbe2.chr8                  59041516 13 + 153482349 -----TGTTATGTTAAAA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48115186 13 + 100215132 -----TGTTATGTTAAAA
i nomLeu3.chr16                C 0 C 0
s saiBol1.JH378165              14119339 12 -  14256875 -----TTTCATGTT-GAG
i saiBol1.JH378165             C 0 C 0
s monDom5.chr3                 315954604 13 - 527952102 -----TGTCATCATAAAG
i monDom5.chr3                 C 0 C 0
s sarHar1.chr2_GL841277_random    379029 13 -   1446407 -----tgtcataataaag
i sarHar1.chr2_GL841277_random C 0 I 9
s macEug2.GL053575                 11171 13 +     74274 -----TGTCATAATAAAG
i macEug2.GL053575             C 0 I 2
s ornAna1.Contig22913               8578 13 +      9822 -----TTTTGTCTTAAAA
i ornAna1.Contig22913          C 0 I 1
s colLiv1.KB375452               1391058  8 +   4234233 -----TGTCA-----AAg
i colLiv1.KB375452             C 0 I 19
s falChe1.KB398121               1474890  8 +   3546035 -----TGTCA-----aag
i falChe1.KB398121             C 0 I 18
s falPer1.KB390921               1612829  8 +   3698665 -----TGTCA-----aag
i falPer1.KB390921             C 0 I 19
s zonAlb1.KB913240                788563  8 -    852449 -----TGTCA-----AAG
i zonAlb1.KB913240             C 0 I 40
s geoFor1.JH739942               1280468  8 +   5104860 -----TGTCA-----AAG
i geoFor1.JH739942             C 0 I 40
s taeGut2.chrZ                  13217118  8 +  72861351 -----TGTCA-----AAG
i taeGut2.chrZ                 C 0 I 40
s pseHum1.KB221303                460690  8 -   1055857 -----TGTCG-----AAG
i pseHum1.KB221303             C 0 I 36
s melUnd1.JH556568               2080057  8 +   4296882 -----TGTCA-----AAG
i melUnd1.JH556568             C 0 I 28
s amaVit1.KB238281                    18  8 +      9836 -----TGTCA-----AAG
i amaVit1.KB238281             C 0 I 32
s araMac1.AOUJ01470298               377  5 -       895 -----TGCCA--------
i araMac1.AOUJ01470298         C 0 I 23
s anaPla1.KB742960                140998  5 +    531124 -----ttttt--------
i anaPla1.KB742960             I 30 I 1
s galGal4.chrZ                  23195480  5 -  82363669 -----ttttg--------
i galGal4.chrZ                 I 24 I 1
s allMis1.JH737334                 62912 12 -    565068 -----TGTTATCTT-AAG
i allMis1.JH737334             C 0 C 0
s cheMyd1.KB497515               3641106 13 +   9092468 -----TGTCATCTTAAAG
i cheMyd1.KB497515             C 0 I 1
s chrPic2.chrUn_KK082917v1      12457741 13 -  13974604 -----TGTCATCTTAAAG
i chrPic2.chrUn_KK082917v1     C 0 I 1
s pelSin1.JH211373               2650018  7 -   4257854 -----TGTC------AAG
i pelSin1.JH211373             C 0 I 1
s apaSpi1.KB928558               3295403  7 -   3719163 -----TGTC------AAG
i apaSpi1.KB928558             C 0 I 1
s anoCar2.chr2                  23372547  8 + 199619895 -----TGTCA-----TAA
i anoCar2.chr2                 C 0 C 0
s xenTro7.KB021649             178198940 12 - 215906545 ------GTAAGTTTTCAG
i xenTro7.KB021649             I 1 C 0
s latCha1.JH128805                273532 13 -    360428 TTGTCTTTCA-----GGG
i latCha1.JH128805             C 0 C 0
e odoRosDiv1.KB229312             750185  2 -   2017862 I
e canFam3.chr16                 18192716  0 -  59632846 C
e felCat8.chrB1                 20474662 206 + 206538554 I
e oviAri3.chr26                 17845457 46 +  44077779 I
e bosTau8.chr27                 18218766 205 +  45407902 I
e panHod1.KE114653               1503331 46 -   2937107 I
e capHir1.chr27                 17930931 46 +  44118849 I
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e astMex1.KB882082               3904961 703 -   8876373 T
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chrZ                  55057957 990 +  59856998 I
e melGal1.chrZ                  62956231  0 +  81011772 I
e calJac3.chr3                 190755530 1172 - 190850796 I
e equCab2.chr27                 18745073 63 -  39960074 I
e orcOrc1.KB316932               3016891  0 -  10937097 C
e rheMac3.chr8                  61650881 41461 + 150158102 I
e macFas5.chr8                  58323911 42259 + 146850525 I
e chlSab2.chr8                  53249873 36839 + 139301422 I
e panTro4.chr8                  54977249 47550 + 143986469 I

a score=2485435.000000
s hg38.chr8_KI270814v1_alt         71940 138 +    141812 --T--T--TTTTCAAAGCTTTA-TTTTGTTCCTTG-TGTGCTAACTACAAA-TAAGTTT---TAAAAGAGTA---------------T----------CAAA---------------AGTCTGCCA----------AAAACAAA----AAAG-------------CTGTAGTGAC-----ATCGAACCAT-ACGATGTAAGCATTGAAC---ATGTGC-AAT--TTTTC
s ponAbe2.chr8                  59041529 127 + 153482349 --T--T--TTTTCAAAGCTTTA-TTTTGTTCCTTG-TGTGCTAACTACAAA-TAAGTTT---TAAAAGAGTA---------------T----------CAAA---------------AGTCTGCCA-------------------------G-------------CTGTAGTGAC-----ATCGAACCAT-ACAATGTAAGCATTGAGC---ATGTGC-AAT--TTTTC
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48115199 138 + 100215132 --T--T--TTTTCAAAGCTTTA-TTTTGTTCCTTG-TGTGCTAACTACAAA-TAAGTTT---TAAAAGAGTA---------------T----------CAAA---------------AGCCTGCCA----------AAAACAAA----AAAG-------------CTGTAGTGAC-----ATCGAACCAT-ACAATGTAAGAATTGAGC---ATGTGC-AGT--TTTTC
i nomLeu3.chr16                C 0 C 0
s saiBol1.JH378165              14119351 150 -  14256875 --T--T--TTTTCAAAGCTAAA-GTGTGTTCCTTGCTGTGCTGACCACAAG-CGAGTTT---T--AATAGTT---------------T----------CACA---------------AGCCTGGCA----------AAAATAGA----AAAGAGGGAAAAAAAGTCTGTAGTGAC-----ACTGAACCAC-ACAATTTCAGCATTGAGC---ATGTGC-AAA--TTTTT
i saiBol1.JH378165             C 0 C 0
s monDom5.chr3                 315954617 149 - 527952102 -----T--TTTTCAAAGCTTTCTTTTTGCTCCTTGTTGTGTTGACCACAAG-CAAGTTT---TAAAAGAGCA---------------T----------CAAG---------------AGTCCGGCAT-AAATGGGAAAAAAAAA----AAAG-------------CTGTAGTGAC-----ACTGAACCGC-ACAATGTAAGCATTGAGC---ATGTGCAAAA--TTTTC
i monDom5.chr3                 C 0 C 0
s sarHar1.chr2_GL841277_random    379051 148 -   1446407 --t--t--ttttcaaagctttctTTTTGCTCCTTGCTGTGTTGACCACAAG-CAAGTTT---TAAAAGAGCA---------------T----------CAAG---------------AGTCCGgcat-aattggg-aaaaaaaa----aaag-------------ctgtagtGAC-----ACTGAACTGC-ACAATGTAAGCATTGAGC---ATGTGC-AAA--TTTTc
i sarHar1.chr2_GL841277_random I 9 C 0
s macEug2.GL053575                 11186 148 +     74274 --T--T--TTTTCAAAGCTTTCTTTTTGCTCCTTGTTGTGCTGGTCACAAG-CAAGTTT---TAAAAGAGCA---------------T----------CAAG---------------AGTCCGGCAT-AAATGGA-AAAAAAAA----AAAG-------------CTGTAGTGAC-----ACTGAACCGC-ACAATGTAAGCATTGAGC---ATGTGC-AAA--TTTTC
i macEug2.GL053575             I 2 C 0
s ornAna1.Contig22913               8592 138 +      9822 --T--T--TTTTCAAAGCTTTC-TTTTGCACCTTGTTGTGCGGACCACAAA-CAAGTTT---TGAAAGATT------------------------------G---------------AGTCTGGCTT-AAA-----TGAGAAAA----AAAG-------------CTGTAGTGAC-----AGAGAACCGC-ACAATGTAAGCATTGAGC---ATGTGC-AAA--TTTTC
i ornAna1.Contig22913          I 1 C 0
s colLiv1.KB375452               1391085 144 +   4234233 --t--c--ttgtcaaagCTTTC-TTTTGCTCCTTATTGTGCGGACCACAAACAAATA-AGGGGTGGGGGGTA---------------A----------CAAC---------------AGTCCGgcat-a-------aatgagaa----aaag-------------ctgtaGTGAC-----ACTGAACCGC-ACAACGTAAGCAATGAGC---ATGTGC-AAA--TTTCC
i colLiv1.KB375452             I 19 C 0
s falChe1.KB398121               1474916 137 +   3546035 --t--t--taatcaaagcttta-ttttgctttttattgtgCGGACTA-AGA-ACAAA------TAGGGGGTA---------------A----------CAAC---------------AGTCCAgcat-a-------aatgagaa----aaag-------------ctgTAGTGAC-----ACTGAACCGC-ACAACTTAAGCAACGAGC---ATGTGC-AAA--TTTCC
i falChe1.KB398121             I 18 C 0
s falPer1.KB390921               1612856 137 +   3698665 --t--t--taatcaaagcttta-ttttgctttttattgtgCGGACTA-AGA-ACAAA------TAGGGGGTA---------------A----------CAAC---------------AGTCCAgcat-a-------aatgagaa----aaag-------------ctgTAGTGAC-----ACTGAACCGC-ACAACTTAAGCAACGAGC---ATGTGC-AAA--TTTCC
i falPer1.KB390921             I 19 C 0
s ficAlb2.chrZ                  55058947 140 +  59856998 --t--t--ttgtcaaagctttc-ttttgCTCCTTATTGTGCGGACCACAAG-AAATA-A---GAAAGGGGTA---------------A----------CAAC---------------TGTCCGGCGT-A-------AATGAGAA----AAAG-------------CTGTAGTGAC-----ACTGAACCGC-ACGATGTAAGCAATAAGC---ATGTGC-AAA--TTTCC
i ficAlb2.chrZ                 I 990 C 0
s zonAlb1.KB913240                788611 140 -    852449 --t--t--ttgtcaaagctttc-ttttgCTCGTTATTGTGCGGGCCACAAG-ACATA-A---GAAAGGGGTA---------------A----------CAAC---------------TGTCCGGCGT-A-------AATGAGAA----AAAG-------------CTGTAGTGAC-----ACTGAACCGC-ACAAGGTAAGCAATAAGC---ATGTGC-AAA--TTTCC
i zonAlb1.KB913240             I 40 C 0
s geoFor1.JH739942               1280516 140 +   5104860 --t--t--ttgtcaaagctttc-ttttgCTCCTTATTGTGCGGACCACAAG-ACATA-A---GAAAGGGGTA---------------A----------CAAC---------------TGTCCGGTGT-A-------AATGAGAA----AAAG-------------CTGTAGTGAC-----ACAGAACCGC-ACAAGGTAAGCAATAAGC---ATGTGC-AAA--TTTCC
i geoFor1.JH739942             I 40 C 0
s taeGut2.chrZ                  13217166 140 +  72861351 --t--t--ttgtcaaagctttc-tttTGCTCCTTATTGTGCGGACCACAAG-ACATA-A---GAAAGGGCTA---------------A----------CAAC---------------TGTCCGACAT-A-------AATGAGAA----AAAG-------------CTGTAGTGAC-----ACTGAACCGC-ACAATGTAAGCAATAAGC---ATGTGC-AAA--TTTCC
i taeGut2.chrZ                 I 40 C 0
s pseHum1.KB221303                460734 140 -   1055857 --t--t--ttgtcaaagctttc-ttttgctcctttttgTGCGGACCACAAG-AAATA-A---GAAAGGGGTA---------------A----------CAAC---------------TGTCCGGCGT-A-------AATGAGAA----AAAG-------------CTGTAGTGAC-----ACTGAACCGC-ACAATGTAAGCAATAAGC---ATGTGC-AAA--TTTCC
i pseHum1.KB221303             I 36 C 0
s melUnd1.JH556568               2080093 138 +   4296882 --t--t--ttgtcaAAGCTTTC-CTTTGCTCCTTATTGTGCGgaccacaaa-gaaaa------aagggggtA---------------A----------CAAC---------------AGTCCAgcat-a-------aatgagaa----aaag-------------ctgtAGTGAC-----ACTGAACCGC-ACAATGTAAGCAATGAGC---ATGTGC-AAA--TTTCC
i melUnd1.JH556568             I 28 C 0
s amaVit1.KB238281                    58 138 +      9836 --t--t--ttgtcaaAGCTTTC-CTTTGCTCCTTATTGTGCGGAccacaaa-aaaaa------gagggggtA---------------A----------CAAC---------------AGTCCAGCAT-A-------AACGAGAA----AAAG-------------TTGTAGTGAC-----ACTGAACCGC-ACAATGTAAGCAATGAAC---ATGTGC-AAA--TTTCC
i amaVit1.KB238281             I 32 C 0
s araMac1.AOUJ01470298               405 165 -       895 --c--c--ccccaaaagctttc-ttttgttccttgtt---CAGATCACAAA-atatt------ggggggggggaaggggtCAATGata----------caacacacacacagacacaagtCCAtcat-a-------aatgagaa----aaag-------------gtGTAGTGAC-----ACTGAACTGC-ATAACATAAGCAATAAGC---ATGTGC-AAA--TTTTC
i araMac1.AOUJ01470298         I 23 C 0
s anaPla1.KB742960                141004 143 +    531124 --t--t--ttgtcaaagctttc-ttttgctCCTTGTTGTGCAGACCACAAA-CAAGTAA---GAGGGGGGTA---------------A----------CAAC---------------AGTGCGgcat-a-------aatgagaa----aaag-------------ctgtAGTGAC-----ACTGAACCGC-ACAACGTAAGCAATGAGC---ATGTGc-aaatttttca
i anaPla1.KB742960             I 1 C 0
s galGal4.chrZ                  23195486 141 -  82363669 --t--g--ttgtcaaaGCTTTC-TTTTGCTCCTTCTTGTGCAGACCACAAA-CAAGT-A---GAGGGGGGTA---------------A----------CAAC---------------AGTGCGGcat-a-------aatgagaa----aaag-------------ctgTAGTGAC-----ACTGAACCGC-ACAAAATAAGCCATGAGC---ATGTGC-AAA-TCTTCA
i galGal4.chrZ                 I 1 C 0
s allMis1.JH737334                 62924 138 -    565068 --T--T--TTTTCAAAGCTTTC-TTTTGCTCCTTGTTGTGCGGACTACAAA-CAAGT-T---AGAAGGGGTA---------------A----------TAAC---------------AGTCCGGCAT-A-------AATGAG------AAAG-------------CTGTAGTGAC-----ACTGAACCGC-ACAACGTAAGCAATGAGC---ATGTGC-AAA--TTTTC
i allMis1.JH737334             C 0 C 0
s cheMyd1.KB497515               3641120 140 +   9092468 --T--TG-TTTTCAAAGCTTTCTTTTTGCTCCTTGTTGTGCAGACCACAAA-CAAGT-T---AGAAGGGGTA----------------------------AC---------------AGTCCAGCATAA-------AATGAGAA----AAAG-------------CTGTAGTGAC-----ACTGAACCGC-ACAACATAAGAAATGTGC---ATGTGC-AAA--TTTTC
i cheMyd1.KB497515             I 1 C 0
s chrPic2.chrUn_KK082917v1      12457755 142 -  13974604 --tactgtttttcaaagctttctTTTTGCCTCTTGTTGTGCGGACCACAAA-CAAGT-T---AGAAGGGGTA----------------------------AC---------------AGTCCAGCGT-A-------AATGAGAA----AAAG-------------CTGTAGTGAC-----ACTGAACCGC-ACAACATAAGCAATGTGC---ATGTGC-AAA--TTTTC
i chrPic2.chrUn_KK082917v1     I 1 C 0
s pelSin1.JH211373               2650026 137 -   4257854 --T--T--TTCTCAAAGCTTTCTTTTTGCTCCTTGTTGTGCGGAACACAAA-CAAGT-T---TCAATGAGTA----------------------------AC---------------AGTCCCGCAT-A-------AATG-AAA----AAAG-------------CTGTAGTGAC-----ACTGAACCGC-ACAACATAAGCAATGCGC---ATGTGC-AAA--TTTTC
i pelSin1.JH211373             I 1 C 0
s apaSpi1.KB928558               3295411 138 -   3719163 --t--t--ttttCAAAGCTTTCTTTTTGCTCCTTGTTGTGCGGAACACAAA-CAAGT-T---TCAATGAGTA----------------------------AC---------------AGTCCCGCAT-A-------AATGaaaa----aaaG-------------CTGTAGTGAC-----ACTGAACCGC-ACAACATAAGCAATGCGC---ATGTGC-AAA--TTTTC
i apaSpi1.KB928558             I 1 C 0
s anoCar2.chr2                  23372555 141 + 199619895 ------AGTTTTAAAAGCTTTC-TTTCGCTCCTTGTTGTGCGGACCACAAA-CAGGTTA---GAAGGGGTTA---------------A----------CAAC---------------AGTCCAACAT-A-------AATGAGAA----AAAG-------------CTGTAGTGAC-----ACTGAACCGC-ACAACGAAAGCATTGAGC---ATGTGC-AAA--TTTTC
i anoCar2.chr2                 C 0 C 0
s xenTro7.KB021649             178198952 132 - 215906545 -----T--TTCTCAAAGCTTTC-GTTCACTTCAGGGTGTATCAAACACGGC-CAAAC-----TGAAGGACTG----------------------------AG---------------TGTCCGGTGG-A-------AACAATG-----AAAG-------------CTGTAGTGAT-----ATCAAGCTGC-TATAAATTCGTACTGAG-----TGTGC-AAA--TCTTA
i xenTro7.KB021649             C 0 C 0
s latCha1.JH128805                273545 164 -    360428 TTT--T--CTTTTGAAGCTG---CTTTGTTCGTAGTTGTGCGGACCATAAg-ttgggat---ttgggggggg---------------ggggctgcggccTAG---------------AATCCAACGT-A-------AATGGGAATGAGAATG-------------CTGTAGTGATCTAGAATGGAGCCGCAACAACATAAGCACTGAACAATATGTGC-AAA--ATTTC
i latCha1.JH128805             C 0 N 0
e odoRosDiv1.KB229312             750185   2 -   2017862 I
e canFam3.chr16                 18192716   0 -  59632846 C
e felCat8.chrB1                 20474662 206 + 206538554 I
e oviAri3.chr26                 17845457  46 +  44077779 I
e bosTau8.chr27                 18218766 205 +  45407902 I
e panHod1.KE114653               1503331  46 -   2937107 I
e capHir1.chr27                 17930931  46 +  44118849 I
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e astMex1.KB882082               3904961 703 -   8876373 T
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e melGal1.chrZ                  62956231   0 +  81011772 I
e calJac3.chr3                 190755530 1172 - 190850796 I
e equCab2.chr27                 18745073  63 -  39960074 I
e orcOrc1.KB316932               3016891   0 -  10937097 C
e rheMac3.chr8                  61650881 41461 + 150158102 I
e macFas5.chr8                  58323911 42259 + 146850525 I
e chlSab2.chr8                  53249873 36839 + 139301422 I
e panTro4.chr8                  54977249 47550 + 143986469 I

a score=361265.000000
s hg38.chr8_KI270814v1_alt         72078 34 +    141812 A--TATCT-ACAGAAGAAA---ATCAT-----CCCTC---TTT--ACAAC
s ponAbe2.chr8                  59041656 34 + 153482349 A--AATCT-ACAGAAGAAA---ATCAT-----CCCTC---TTT--ACAAC
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48115337 34 + 100215132 A--AATCT-ACAGAAGAAA---ATCAT-----CCCTC---TTT--ACAAC
i nomLeu3.chr16                C 0 C 0
s saiBol1.JH378165              14119501 33 -  14256875 A--AAGC--AAGGAAGAAA---ATCAT-----CCCTC---TCT--ATAAT
i saiBol1.JH378165             C 0 C 0
s monDom5.chr3                 315954766 35 - 527952102 A--AATCA-AAAGAAGGAA---ATTTT-----CCTTC--TTTT--ACAAC
i monDom5.chr3                 C 0 C 0
s sarHar1.chr2_GL841277_random    379199 35 -   1446407 a--aatca-aaagaaggaa---aattt-----cccTC--TTTT--ACAAC
i sarHar1.chr2_GL841277_random C 0 C 0
s macEug2.GL053575                 11334 35 +     74274 A--AATCA-AAAGAAGGAA---ATTTT-----CCCTC--TTTT--ACAAC
i macEug2.GL053575             C 0 C 0
s ornAna1.Contig22913               8730 37 +      9822 A--AGTCA-AAAGAGGGCA---CTCAT-----CCCTCTCTCTT--ACAAT
i ornAna1.Contig22913          C 0 C 0
s colLiv1.KB375452               1391229 34 +   4234233 A--AATCA-TAAGA-GGAA---GTCAT-----CCCTC--TCTT--ACAAT
i colLiv1.KB375452             C 0 C 0
s falChe1.KB398121               1475053 37 +   3546035 A--AATCG-TAAGA-GGAAAACACCCC-----TCCTC--TCTT--ACAAT
i falChe1.KB398121             C 0 C 0
s falPer1.KB390921               1612993 37 +   3698665 A--AATCG-TAAGA-GGAAAACACCCC-----TCCTC--TCTT--ACAAT
i falPer1.KB390921             C 0 C 0
s ficAlb2.chrZ                  55059087 32 +  59856998 A--AATCA-TAAGA-GGAA---GCCAA-----ACCTC--TCTT----AAT
i ficAlb2.chrZ                 C 0 C 0
s zonAlb1.KB913240                788751 32 -    852449 A--AATTG-TAAGA-GGAA---GCCAA-----ACCTC--TCTT----AAT
i zonAlb1.KB913240             C 0 C 0
s geoFor1.JH739942               1280656 32 +   5104860 A--AATTG-TAAGA-GGAA---GCCAA-----ACCTC--TCTT----AAC
i geoFor1.JH739942             C 0 C 0
s taeGut2.chrZ                  13217306 32 +  72861351 A--AATTG-TAAGA-GGAA---GCCAA-----ACCTC--TCTT----AAT
i taeGut2.chrZ                 C 0 C 0
s pseHum1.KB221303                460874 33 -   1055857 A--TATCGTTAAGA-GGAA---GCCAA-----ACCTC--TCTT----AAT
i pseHum1.KB221303             C 0 C 0
s melUnd1.JH556568               2080231 34 +   4296882 A--AATCA-TAAGA-GGAA---GCCAT-----TCCTC--TCTT--ACAAT
i melUnd1.JH556568             C 0 C 0
s amaVit1.KB238281                   196 34 +      9836 A--AATCA-TAAGA-GGAA---GCCAT-----TCCTC--TCTT--ACAAT
i amaVit1.KB238281             C 0 C 0
s araMac1.AOUJ01470298               570 27 -       895 A--AGTCC-TAAGA-AGCA---GCCAT-----GTTTT--TT---------
i araMac1.AOUJ01470298         C 0 C 0
s anaPla1.KB742960                141147 34 +    531124 a--aatcc-tAAGA-GAAA---GCCAT-----CCCTC--TCTT--ACAAT
i anaPla1.KB742960             C 0 C 0
s galGal4.chrZ                  23195627 34 -  82363669 A--AATCA-TAAGA-GAAA---GCCAT-----CCCTC--TCTT--GCAAT
i galGal4.chrZ                 C 0 C 0
s allMis1.JH737334                 63062 33 -    565068 A--AATCA----GA-GGAA---GTCAT-----CCCTC--TCTTTTACAAC
i allMis1.JH737334             C 0 C 0
s cheMyd1.KB497515               3641260 34 +   9092468 A--AATCA-GAAGA-GGAA---GTCAT-----CCCTC--TTTT--ACAAC
i cheMyd1.KB497515             C 0 C 0
s chrPic2.chrUn_KK082917v1      12457897 39 -  13974604 A--AATCA-GAAGA-GGAC---GTCGTCATCCCTCTC--TTTT--ACAAC
i chrPic2.chrUn_KK082917v1     C 0 C 0
s pelSin1.JH211373               2650163 34 -   4257854 A--AATCA-GAAGA-GGAT---GTCAT-----CCCTC--TTTT--ACAAC
i pelSin1.JH211373             C 0 C 0
s apaSpi1.KB928558               3295549 34 -   3719163 A--AATCA-GAAGA-GGAT---GTCAT-----CCCTC--TTTT--ACAAC
i apaSpi1.KB928558             C 0 C 0
s anoCar2.chr2                  23372696 32 + 199619895 A--AATCA-AAAGA-GGAA---GTTAT-----CCCCC--TTGC----AAC
i anoCar2.chr2                 C 0 C 0
s xenTro7.KB021649             178199084 35 - 215906545 AAGAAGTA-AAGGA-GGAA---GCGGA-----TCCAC--TTTG--TTAC-
i xenTro7.KB021649             C 0 N 0
e odoRosDiv1.KB229312             750185  2 -   2017862 I
e canFam3.chr16                 18192716  0 -  59632846 C
e felCat8.chrB1                 20474662 206 + 206538554 I
e oviAri3.chr26                 17845457 46 +  44077779 I
e bosTau8.chr27                 18218766 205 +  45407902 I
e panHod1.KE114653               1503331 46 -   2937107 I
e capHir1.chr27                 17930931 46 +  44118849 I
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e astMex1.KB882082               3904961 703 -   8876373 T
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e melGal1.chrZ                  62956231  0 +  81011772 I
e calJac3.chr3                 190755530 1172 - 190850796 I
e equCab2.chr27                 18745073 63 -  39960074 I
e orcOrc1.KB316932               3016891  0 -  10937097 C
e rheMac3.chr8                  61650881 41461 + 150158102 I
e macFas5.chr8                  58323911 42259 + 146850525 I
e chlSab2.chr8                  53249873 36839 + 139301422 I
e panTro4.chr8                  54977249 47550 + 143986469 I

a score=92821.000000
s hg38.chr8_KI270814v1_alt         72112 4 +    141812 ATGG
s ponAbe2.chr8                  59041690 4 + 153482349 ATGG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48115371 4 + 100215132 ATGG
i nomLeu3.chr16                C 0 C 0
s saiBol1.JH378165              14119534 4 -  14256875 GCAG
i saiBol1.JH378165             C 0 C 0
s monDom5.chr3                 315954801 4 - 527952102 GTGG
i monDom5.chr3                 C 0 C 0
s sarHar1.chr2_GL841277_random    379234 4 -   1446407 GTGG
i sarHar1.chr2_GL841277_random C 0 C 0
s macEug2.GL053575                 11369 4 +     74274 ATGG
i macEug2.GL053575             C 0 C 0
s ornAna1.Contig22913               8767 4 +      9822 ATGG
i ornAna1.Contig22913          C 0 C 0
s colLiv1.KB375452               1391263 4 +   4234233 GTGG
i colLiv1.KB375452             C 0 C 0
s falChe1.KB398121               1475090 4 +   3546035 GTGG
i falChe1.KB398121             C 0 C 0
s falPer1.KB390921               1613030 4 +   3698665 GTGG
i falPer1.KB390921             C 0 C 0
s ficAlb2.chrZ                  55059119 4 +  59856998 GTGG
i ficAlb2.chrZ                 C 0 C 0
s zonAlb1.KB913240                788783 4 -    852449 GTGG
i zonAlb1.KB913240             C 0 C 0
s geoFor1.JH739942               1280688 4 +   5104860 GTGG
i geoFor1.JH739942             C 0 C 0
s taeGut2.chrZ                  13217338 4 +  72861351 GTGG
i taeGut2.chrZ                 C 0 C 0
s pseHum1.KB221303                460907 4 -   1055857 GTGG
i pseHum1.KB221303             C 0 C 0
s melUnd1.JH556568               2080265 4 +   4296882 GTGG
i melUnd1.JH556568             C 0 C 0
s amaVit1.KB238281                   230 4 +      9836 GCAG
i amaVit1.KB238281             C 0 C 0
s anaPla1.KB742960                141181 4 +    531124 GTGG
i anaPla1.KB742960             C 0 C 0
s galGal4.chrZ                  23195661 4 -  82363669 GTGG
i galGal4.chrZ                 C 0 C 0
s allMis1.JH737334                 63095 4 -    565068 ATGG
i allMis1.JH737334             C 0 C 0
s cheMyd1.KB497515               3641294 4 +   9092468 ATGG
i cheMyd1.KB497515             C 0 C 0
s chrPic2.chrUn_KK082917v1      12457936 4 -  13974604 ATGG
i chrPic2.chrUn_KK082917v1     C 0 C 0
s pelSin1.JH211373               2650197 4 -   4257854 ATGG
i pelSin1.JH211373             C 0 C 0
s apaSpi1.KB928558               3295583 4 -   3719163 ATGG
i apaSpi1.KB928558             C 0 C 0
s anoCar2.chr2                  23372728 4 + 199619895 ATGG
i anoCar2.chr2                 C 0 C 0
e odoRosDiv1.KB229312             750185 2 -   2017862 I
e canFam3.chr16                 18192716 0 -  59632846 C
e felCat8.chrB1                 20474662 206 + 206538554 I
e oviAri3.chr26                 17845457 46 +  44077779 I
e bosTau8.chr27                 18218766 205 +  45407902 I
e panHod1.KE114653               1503331 46 -   2937107 I
e capHir1.chr27                 17930931 46 +  44118849 I
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               597 0 -       895 C
e astMex1.KB882082               3904961 703 -   8876373 T
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e melGal1.chrZ                  62956231 0 +  81011772 I
e calJac3.chr3                 190755530 1172 - 190850796 I
e equCab2.chr27                 18745073 63 -  39960074 I
e orcOrc1.KB316932               3016891 0 -  10937097 C
e rheMac3.chr8                  61650881 41461 + 150158102 I
e macFas5.chr8                  58323911 42259 + 146850525 I
e chlSab2.chr8                  53249873 36839 + 139301422 I
e panTro4.chr8                  54977249 47550 + 143986469 I

a score=36047.000000
s hg38.chr8_KI270814v1_alt         72116 1 +    141812 T
s ponAbe2.chr8                  59041694 1 + 153482349 T
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48115375 1 + 100215132 T
i nomLeu3.chr16                C 0 C 0
s saiBol1.JH378165              14119538 1 -  14256875 T
i saiBol1.JH378165             C 0 C 0
s panHod1.KE114653               1503377 1 -   2937107 T
i panHod1.KE114653             I 46 C 0
s bosTau8.chr27                 18218971 1 +  45407902 T
i bosTau8.chr27                I 205 C 0
s oviAri3.chr26                 17845503 1 +  44077779 T
i oviAri3.chr26                I 46 C 0
s capHir1.chr27                 17930977 1 +  44118849 T
i capHir1.chr27                I 46 C 0
s equCab2.chr27                 18745136 1 -  39960074 T
i equCab2.chr27                I 63 C 0
s odoRosDiv1.KB229312             750187 1 -   2017862 T
i odoRosDiv1.KB229312          I 2 C 0
s monDom5.chr3                 315954805 1 - 527952102 T
i monDom5.chr3                 C 0 I 306
s sarHar1.chr2_GL841277_random    379238 1 -   1446407 T
i sarHar1.chr2_GL841277_random C 0 N 0
s macEug2.GL053575                 11373 1 +     74274 T
i macEug2.GL053575             C 0 n 0
s ornAna1.Contig22913               8771 1 +      9822 T
i ornAna1.Contig22913          C 0 n 0
s colLiv1.KB375452               1391267 1 +   4234233 T
i colLiv1.KB375452             C 0 C 0
s falChe1.KB398121               1475094 1 +   3546035 T
i falChe1.KB398121             C 0 C 0
s falPer1.KB390921               1613034 1 +   3698665 T
i falPer1.KB390921             C 0 C 0
s ficAlb2.chrZ                  55059123 1 +  59856998 T
i ficAlb2.chrZ                 C 0 C 0
s zonAlb1.KB913240                788787 1 -    852449 T
i zonAlb1.KB913240             C 0 C 0
s geoFor1.JH739942               1280692 1 +   5104860 T
i geoFor1.JH739942             C 0 C 0
s taeGut2.chrZ                  13217342 1 +  72861351 T
i taeGut2.chrZ                 C 0 C 0
s pseHum1.KB221303                460911 1 -   1055857 T
i pseHum1.KB221303             C 0 C 0
s melUnd1.JH556568               2080269 1 +   4296882 T
i melUnd1.JH556568             C 0 C 0
s amaVit1.KB238281                   234 1 +      9836 T
i amaVit1.KB238281             C 0 C 0
s araMac1.AOUJ01470298               597 1 -       895 C
i araMac1.AOUJ01470298         C 0 C 0
s anaPla1.KB742960                141185 1 +    531124 T
i anaPla1.KB742960             C 0 C 0
s galGal4.chrZ                  23195665 1 -  82363669 T
i galGal4.chrZ                 C 0 C 0
s cheMyd1.KB497515               3641298 1 +   9092468 T
i cheMyd1.KB497515             C 0 n 0
s chrPic2.chrUn_KK082917v1      12457940 1 -  13974604 T
i chrPic2.chrUn_KK082917v1     C 0 n 0
s anoCar2.chr2                  23372732 1 + 199619895 T
i anoCar2.chr2                 C 0 n 0
e canFam3.chr16                 18192716 0 -  59632846 C
e felCat8.chrB1                 20474662 206 + 206538554 I
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e astMex1.KB882082               3904961 703 -   8876373 T
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e allMis1.JH737334                 63099 0 -    565068 C
e melGal1.chrZ                  62956231 0 +  81011772 I
e apaSpi1.KB928558               3295587 0 -   3719163 C
e pelSin1.JH211373               2650201 0 -   4257854 C
e calJac3.chr3                 190755530 1172 - 190850796 I
e orcOrc1.KB316932               3016891 0 -  10937097 C
e rheMac3.chr8                  61650881 41461 + 150158102 I
e macFas5.chr8                  58323911 42259 + 146850525 I
e chlSab2.chr8                  53249873 36839 + 139301422 I
e panTro4.chr8                  54977249 47550 + 143986469 I

a score=7672.000000
s hg38.chr8_KI270814v1_alt     72117 4 +    141812 TGGG
s ponAbe2.chr8              59041695 4 + 153482349 TGGG
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48115376 4 + 100215132 TGGG
i nomLeu3.chr16            C 0 C 0
s saiBol1.JH378165          14119539 4 -  14256875 TAAA
i saiBol1.JH378165         C 0 C 0
s panHod1.KE114653           1503378 4 -   2937107 TAAA
i panHod1.KE114653         C 0 C 0
s bosTau8.chr27             18218972 4 +  45407902 TAAA
i bosTau8.chr27            C 0 C 0
s oviAri3.chr26             17845504 4 +  44077779 TAAA
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17930978 4 +  44118849 TAAA
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18745137 4 -  39960074 TGGA
i equCab2.chr27            C 0 C 0
s odoRosDiv1.KB229312         750188 4 -   2017862 TAGG
i odoRosDiv1.KB229312      C 0 C 0
e canFam3.chr16             18192716 0 -  59632846 C
e felCat8.chrB1             20474662 206 + 206538554 I
e ornAna1.Contig22913           8772 0 +      9822 I
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           598 0 -       895 C
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55059124 0 +  59856998 C
e anoCar2.chr2              23372733 0 + 199619895 I
e pseHum1.KB221303            460912 0 -   1055857 C
e zonAlb1.KB913240            788788 0 -    852449 C
e colLiv1.KB375452           1391268 0 +   4234233 C
e allMis1.JH737334             63099 0 -    565068 C
e falPer1.KB390921           1613035 0 +   3698665 C
e falChe1.KB398121           1475095 0 +   3546035 C
e macEug2.GL053575             11374 0 +     74274 I
e galGal4.chrZ              23195666 0 -  82363669 C
e geoFor1.JH739942           1280693 0 +   5104860 C
e melGal1.chrZ              62956231 0 +  81011772 I
e anaPla1.KB742960            141186 0 +    531124 C
e amaVit1.KB238281               235 0 +      9836 C
e apaSpi1.KB928558           3295587 0 -   3719163 C
e cheMyd1.KB497515           3641299 0 +   9092468 I
e chrPic2.chrUn_KK082917v1  12457941 0 -  13974604 I
e pelSin1.JH211373           2650201 0 -   4257854 C
e calJac3.chr3             190755530 1172 - 190850796 I
e melUnd1.JH556568           2080270 0 +   4296882 C
e monDom5.chr3             315954806 306 - 527952102 I
e taeGut2.chrZ              13217343 0 +  72861351 C
e orcOrc1.KB316932           3016891 0 -  10937097 C
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=98428.000000
s hg38.chr8_KI270814v1_alt     72121 4 +    141812 CTGA
s ponAbe2.chr8              59041699 4 + 153482349 CTGA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48115380 4 + 100215132 CTGA
i nomLeu3.chr16            C 0 C 0
s saiBol1.JH378165          14119543 4 -  14256875 CTGA
i saiBol1.JH378165         C 0 C 0
s panHod1.KE114653           1503382 4 -   2937107 CTGA
i panHod1.KE114653         C 0 C 0
s bosTau8.chr27             18218976 4 +  45407902 CTGA
i bosTau8.chr27            C 0 C 0
s oviAri3.chr26             17845508 4 +  44077779 CTGA
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17930982 4 +  44118849 CTGA
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18745141 4 -  39960074 CTGA
i equCab2.chr27            C 0 C 0
s canFam3.chr16             18192716 4 -  59632846 CTGA
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         750192 4 -   2017862 CTGA
i odoRosDiv1.KB229312      C 0 C 0
s colLiv1.KB375452           1391268 4 +   4234233 TTGA
i colLiv1.KB375452         C 0 C 0
s falChe1.KB398121           1475095 4 +   3546035 TTAA
i falChe1.KB398121         C 0 C 0
s falPer1.KB390921           1613035 4 +   3698665 TTAA
i falPer1.KB390921         C 0 C 0
s ficAlb2.chrZ              55059124 4 +  59856998 TTGA
i ficAlb2.chrZ             C 0 C 0
s zonAlb1.KB913240            788788 4 -    852449 TTGA
i zonAlb1.KB913240         C 0 C 0
s geoFor1.JH739942           1280693 4 +   5104860 TTGA
i geoFor1.JH739942         C 0 C 0
s taeGut2.chrZ              13217343 4 +  72861351 TTGA
i taeGut2.chrZ             C 0 C 0
s pseHum1.KB221303            460912 4 -   1055857 TTGA
i pseHum1.KB221303         C 0 C 0
s melUnd1.JH556568           2080270 4 +   4296882 TTGA
i melUnd1.JH556568         C 0 C 0
s amaVit1.KB238281               235 4 +      9836 TTGA
i amaVit1.KB238281         C 0 C 0
s araMac1.AOUJ01470298           598 4 -       895 TTGA
i araMac1.AOUJ01470298     C 0 C 0
s anaPla1.KB742960            141186 4 +    531124 TTGA
i anaPla1.KB742960         C 0 C 0
s galGal4.chrZ              23195666 4 -  82363669 TTGA
i galGal4.chrZ             C 0 C 0
s allMis1.JH737334             63099 3 -    565068 -TGA
i allMis1.JH737334         C 0 C 0
s pelSin1.JH211373           2650201 3 -   4257854 -TGA
i pelSin1.JH211373         C 0 C 0
s apaSpi1.KB928558           3295587 3 -   3719163 -TGA
i apaSpi1.KB928558         C 0 C 0
e felCat8.chrB1             20474662 206 + 206538554 I
e ornAna1.Contig22913           8772 0 +      9822 I
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e anoCar2.chr2              23372733 0 + 199619895 I
e macEug2.GL053575             11374 0 +     74274 I
e melGal1.chrZ              62956231 0 +  81011772 I
e cheMyd1.KB497515           3641299 0 +   9092468 I
e chrPic2.chrUn_KK082917v1  12457941 0 -  13974604 I
e calJac3.chr3             190755530 1172 - 190850796 I
e monDom5.chr3             315954806 306 - 527952102 I
e orcOrc1.KB316932           3016891 0 -  10937097 C
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=386575.000000
s hg38.chr8_KI270814v1_alt     72125 35 +    141812 TTTTTAAGAAATAAAA-GAT-AATAC----ATCAGAAAAGC
s ponAbe2.chr8              59041703 35 + 153482349 TTTTTAAGAAATAAAA-GAT-AATAA----ATGAGAAAAGC
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48115384 35 + 100215132 TTTTTAAGAAAGAAAA-GAT-AATAA----ATCAGAAAAGC
i nomLeu3.chr16            C 0 C 0
s saiBol1.JH378165          14119547 36 -  14256875 TTTTTAAGAAATAAAATGTT-AAGAA----ATCAGAAAAGC
i saiBol1.JH378165         C 0 C 0
s panHod1.KE114653           1503386 35 -   2937107 TTTATATGAAACAAAA-TGT-TAAAA----ATCAGAAAAGG
i panHod1.KE114653         C 0 C 0
s bosTau8.chr27             18218980 36 +  45407902 TTTATATGAAACAAAA-GGTAAAAAA----ATCAGAAAAGG
i bosTau8.chr27            C 0 C 0
s oviAri3.chr26             17845512 35 +  44077779 TTTATATGAAACAAAA-GGT-TAAAA----ATCAGAAAAGG
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17930986 35 +  44118849 TTTATATGAAACAAAA-GGT-TAAAA----ATCAGAAAAGG
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18745145 35 -  39960074 CTTCTAAGAAATGAAA-GGT-AAGAA----ATCAGAAGGGT
i equCab2.chr27            C 0 C 0
s felCat8.chrB1             20474868 35 + 206538554 ttttaaaaaaaTAAAA-GGT-ATGAA----ATCAGAAAAGG
i felCat8.chrB1            I 206 C 0
s canFam3.chr16             18192720 35 -  59632846 TTTCTGAAAAATGAAA-GGT-AAGAA----ATCAGAAAAGG
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         750196 35 -   2017862 CTTCTGAAAAATGAAA-GGT-AAGAA----ATCAGAAAAGG
i odoRosDiv1.KB229312      C 0 C 0
s colLiv1.KB375452           1391272 33 +   4234233 GTGTTTTGACACAC---GAC-TGTAC----GTTAGTAAGGC
i colLiv1.KB375452         C 0 C 0
s falChe1.KB398121           1475099 35 +   3546035 GTGTTTTGACACACAT-GAC-TGTAG----GTTAGTAAGGC
i falChe1.KB398121         C 0 C 0
s falPer1.KB390921           1613039 35 +   3698665 GTGTTTTGACACACAT-GAC-TGTAG----GTTAGTAAGGC
i falPer1.KB390921         C 0 C 0
s ficAlb2.chrZ              55059128 35 +  59856998 GTGTTTGGACACACAT-CAC-TGTAG----GTTAGTAAGGC
i ficAlb2.chrZ             C 0 n 0
s zonAlb1.KB913240            788792 33 -    852449 GTGTTTGGACACAC---GAC-TGTAC----GTTAGTAAGGC
i zonAlb1.KB913240         C 0 n 0
s geoFor1.JH739942           1280697 35 +   5104860 GTGTTTGGACACACAT-GAC-TGTAG----GTTAGTAAGGC
i geoFor1.JH739942         C 0 n 0
s taeGut2.chrZ              13217347 35 +  72861351 GTGTTTGGACACACAT-GAC-TGTAG----GTTAGTAAGGC
i taeGut2.chrZ             C 0 n 0
s pseHum1.KB221303            460916 35 -   1055857 GTGTCTGGACACACAT-GAC-TGTAG----GTTAGTAAGGC
i pseHum1.KB221303         C 0 n 0
s melUnd1.JH556568           2080274 39 +   4296882 GTGTTTTGACACATAT-GAC-TGTAAATTAGTTAGTAAGGC
i melUnd1.JH556568         C 0 n 0
s amaVit1.KB238281               239 39 +      9836 GTGTTTTGACACACAT-GAC-TGTAGATTAGTTAGTAAGGC
i amaVit1.KB238281         C 0 C 0
s araMac1.AOUJ01470298           602 35 -       895 TTCTTTTGAAACACAT-GAC-TGTAT----GCTAATAAGGC
i araMac1.AOUJ01470298     C 0 n 0
s anaPla1.KB742960            141190 35 +    531124 GTGTTTTGACACACAT-GAC-TGTAG----GTTAGTAAGGC
i anaPla1.KB742960         C 0 C 0
s galGal4.chrZ              23195670 35 -  82363669 GTGTTTTGACACACAT-GAC-TGTAG----GTTAGTAAGGC
i galGal4.chrZ             C 0 C 0
s allMis1.JH737334             63102 35 -    565068 GTGTTTTGACACATAT-GAC-CGTAG----GCTAATAAGGC
i allMis1.JH737334         C 0 C 0
s pelSin1.JH211373           2650204 35 -   4257854 GTGTTTTGACACATAT-TAC-CATAG----GTTAAAAAGGC
i pelSin1.JH211373         C 0 n 0
s apaSpi1.KB928558           3295590 35 -   3719163 GTGTTTTGACACATAT-TAC-CATAG----GTTAAAAAGGC
i apaSpi1.KB928558         C 0 n 0
e ornAna1.Contig22913           8772  0 +      9822 I
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e anoCar2.chr2              23372733  0 + 199619895 I
e macEug2.GL053575             11374  0 +     74274 I
e melGal1.chrZ              62956231  0 +  81011772 I
e cheMyd1.KB497515           3641299  0 +   9092468 I
e chrPic2.chrUn_KK082917v1  12457941  0 -  13974604 I
e calJac3.chr3             190755530 1172 - 190850796 I
e monDom5.chr3             315954806 306 - 527952102 I
e orcOrc1.KB316932           3016891  0 -  10937097 C
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=126950.000000
s hg38.chr8_KI270814v1_alt     72160 33 +    141812 ------AAATATTTGGCATCTACATATTCAATATCTA---------GA
s ponAbe2.chr8              59041738 33 + 153482349 ------AAATATTTGGCATCTACGTATACAATATCTA---------GA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48115419 33 + 100215132 ------AAATATTTGGCATCTACATATTCAATATCTA---------GA
i nomLeu3.chr16            C 0 C 0
s saiBol1.JH378165          14119583 33 -  14256875 ------AAGTATTTGGCACCTACATAGCCAATATCTG---------GC
i saiBol1.JH378165         C 0 C 0
s panHod1.KE114653           1503421 33 -   2937107 ------AAATATGAGGCACCCACATACCCAATATCTA---------AC
i panHod1.KE114653         C 0 C 0
s bosTau8.chr27             18219016 33 +  45407902 ------AAATATGAGGCATCCACATACCCAATATCTA---------AC
i bosTau8.chr27            C 0 C 0
s oviAri3.chr26             17845547 25 +  44077779 ------AAATATGAGGC--------ACCCAATATCTA---------AC
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17931021 25 +  44118849 ------AAATATGAGGC--------ACCCAATATCTA---------AC
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18745180 33 -  39960074 ------AAATACTTGGCACCTACATGTTCAATATCTA---------CC
i equCab2.chr27            C 0 C 0
s felCat8.chrB1             20474903 33 + 206538554 ------AAATATGTGGCATTGGCATATTCAACAGCAA---------AC
i felCat8.chrB1            C 0 C 0
s canFam3.chr16             18192755 33 -  59632846 ------AAATACTTGGCACTTGCATATTCAATATGGA---------GC
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         750231 33 -   2017862 ------AAATACTTGGCACTTGCATATTCAATATCTA---------AC
i odoRosDiv1.KB229312      C 0 C 0
s colLiv1.KB375452           1391305 27 +   4234233 TGCTCCTAGTATGTG------------CCAGTATTta---------ag
i colLiv1.KB375452         C 0 C 0
s falChe1.KB398121           1475134 27 +   3546035 TGCTCCTAGTATGTG------------CCAGTATtta---------gg
i falChe1.KB398121         C 0 C 0
s falPer1.KB390921           1613074 27 +   3698665 TGCTCCTAGTATGTG------------CCAGTATtta---------gg
i falPer1.KB390921         C 0 C 0
s amaVit1.KB238281               278 27 +      9836 TGCTCCTAGTATGTG------------CCAGTAttta---------ag
i amaVit1.KB238281         C 0 C 0
s anaPla1.KB742960            141225 27 +    531124 TGCTCCTAGTATGTG------------CCAGTATtta---------aa
i anaPla1.KB742960         C 0 C 0
s galGal4.chrZ              23195705 36 -  82363669 TGCTCCTAGTATGTG------------CCAGTATTTAAACGAgaagaa
i galGal4.chrZ             C 0 C 0
s allMis1.JH737334             63137 27 -    565068 TGCTCCTAATATGTG------------CCAGTATTTA---------AG
i allMis1.JH737334         C 0 C 0
e ornAna1.Contig22913           8772  0 +      9822 I
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637  0 -       895 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55059163  0 +  59856998 I
e anoCar2.chr2              23372733  0 + 199619895 I
e pseHum1.KB221303            460951  0 -   1055857 I
e zonAlb1.KB913240            788825  0 -    852449 I
e macEug2.GL053575             11374  0 +     74274 I
e geoFor1.JH739942           1280732  0 +   5104860 I
e melGal1.chrZ              62956231  0 +  81011772 I
e apaSpi1.KB928558           3295625  0 -   3719163 I
e cheMyd1.KB497515           3641299  0 +   9092468 I
e chrPic2.chrUn_KK082917v1  12457941  0 -  13974604 I
e pelSin1.JH211373           2650239  0 -   4257854 I
e calJac3.chr3             190755530 1172 - 190850796 I
e melUnd1.JH556568           2080313  0 +   4296882 I
e monDom5.chr3             315954806 306 - 527952102 I
e taeGut2.chrZ              13217382  0 +  72861351 I
e orcOrc1.KB316932           3016891  0 -  10937097 C
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=11155.000000
s hg38.chr8_KI270814v1_alt     72193 38 +    141812 ACCATG----CAGA------GTA--------------GAAGATTTAAAGAAATATGAAGAAC
s ponAbe2.chr8              59041771 38 + 153482349 ACCATG----CAGA------GTA--------------GAAGATTTAAAGAAATGTGAAGAAC
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48115452 38 + 100215132 ACCATG----CAGA------GTA--------------GAAGATTTAAAGAAATATGGAGAAC
i nomLeu3.chr16            C 0 C 0
s saiBol1.JH378165          14119616 35 -  14256875 ACTATG----CAGA------GTA--------------GAAGAGTTAAATAA---TCAAGAAC
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3016891 42 -  10937097 ACTATGCAAACAGA------GTA--------------AAAGGATTAGAGAACAAATGAGGAG
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1503454 42 -   2937107 ACTATGCAAACAGA------GTA--------------GAAAAATTATAGGACAAAAAAGGAG
i panHod1.KE114653         C 0 C 0
s bosTau8.chr27             18219049 42 +  45407902 ACTATGCAAACAGA------GTA--------------GAAAAATTACAGGACAAACAAGGAG
i bosTau8.chr27            C 0 C 0
s oviAri3.chr26             17845572 42 +  44077779 ACTATGCAAACAGA------GTA--------------GAAAAATTATAGGACAAACAAGGAG
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17931046 42 +  44118849 ACTATGCAAACAGA------GTA--------------GAAAAATTATAGGACAAACAAGGAG
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18745213 42 -  39960074 ACTATGCGAACAGC------GTG--------------GAAGAGTCACAGAATTAGGAGGGGG
i equCab2.chr27            C 0 C 0
s felCat8.chrB1             20474936 42 + 206538554 ACTAAGCAAACAGA------GTA--------------AAACAGTTACAGAAATATGAAGGGG
i felCat8.chrB1            C 0 C 0
s canFam3.chr16             18192788 42 -  59632846 ATGTTGCAAACAGA------GTA--------------GAATAGTTACAGAACTATGAAGGGG
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         750264 42 -   2017862 ACTATGCAAACAGA------GTA--------------GAAGAGTTACAGAACAATGAAGGGT
i odoRosDiv1.KB229312      C 0 C 0
s colLiv1.KB375452           1391332 23 +   4234233 -----------ggg------agg----------------------aaaaacaaaaaaagagc
i colLiv1.KB375452         C 0 I 23
s falChe1.KB398121           1475161 37 +   3546035 -----------ggg------gga-gggggg-------gcaggattaaaaaaaaaagaaaagc
i falChe1.KB398121         C 0 n 0
s falPer1.KB390921           1613101 34 +   3698665 -----------ggg------ggaggggggg-------gcaggattaaaaaaaaagaaa----
i falPer1.KB390921         C 0 C 0
s amaVit1.KB238281               305 44 +      9836 -----------gagaagaaaggagtgggga-------gaaggggggaagagagaaaaagggg
i amaVit1.KB238281         C 0 C 0
s anaPla1.KB742960            141252 40 +    531124 -----------ggg------gagggggggg---aagcTCAGGTCTTCAAGCATGTGGAGC--
i anaPla1.KB742960         C 0 C 0
s galGal4.chrZ              23195741 43 -  82363669 -----------ggg------gaggggagggggtaAGCTCAGGTCTTCAAGCAAGTGGAGC--
i galGal4.chrZ             C 0 C 0
s allMis1.JH737334             63164 33 -    565068 -----------GGA------AAA----------AAGCTCAGGTCTTCAAGCATAAGGAGC--
i allMis1.JH737334         C 0 C 0
e ornAna1.Contig22913           8772  0 +      9822 I
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637  0 -       895 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55059163  0 +  59856998 I
e anoCar2.chr2              23372733  0 + 199619895 I
e pseHum1.KB221303            460951  0 -   1055857 I
e zonAlb1.KB913240            788825  0 -    852449 I
e macEug2.GL053575             11374  0 +     74274 I
e geoFor1.JH739942           1280732  0 +   5104860 I
e melGal1.chrZ              62956231  0 +  81011772 I
e apaSpi1.KB928558           3295625  0 -   3719163 I
e cheMyd1.KB497515           3641299  0 +   9092468 I
e chrPic2.chrUn_KK082917v1  12457941  0 -  13974604 I
e pelSin1.JH211373           2650239  0 -   4257854 I
e calJac3.chr3             190755530 1172 - 190850796 I
e melUnd1.JH556568           2080313  0 +   4296882 I
e monDom5.chr3             315954806 306 - 527952102 I
e taeGut2.chrZ              13217382  0 +  72861351 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=-24517.000000
s hg38.chr8_KI270814v1_alt     72231 6 +    141812 AAA--ACA
s ponAbe2.chr8              59041809 6 + 153482349 AAA--ACA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48115490 6 + 100215132 AAA--ACA
i nomLeu3.chr16            C 0 C 0
s saiBol1.JH378165          14119651 6 -  14256875 GAA--GTG
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3016933 6 -  10937097 GAA--AAT
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1503496 6 -   2937107 GAA--AAT
i panHod1.KE114653         C 0 C 0
s bosTau8.chr27             18219091 6 +  45407902 GAA--AAT
i bosTau8.chr27            C 0 C 0
s oviAri3.chr26             17845614 6 +  44077779 GAA--AAT
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17931088 6 +  44118849 GAA--AAT
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18745255 6 -  39960074 GAA--ATG
i equCab2.chr27            C 0 C 0
s felCat8.chrB1             20474978 6 + 206538554 GAA--ATT
i felCat8.chrB1            C 0 C 0
s canFam3.chr16             18192830 6 -  59632846 AAA--ATG
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         750306 6 -   2017862 AAA--ATG
i odoRosDiv1.KB229312      C 0 C 0
s colLiv1.KB375452           1391378 1 +   4234233 -----A--
i colLiv1.KB375452         I 23 I 11
s falPer1.KB390921           1613135 1 +   3698665 -----a--
i falPer1.KB390921         C 0 n 0
s amaVit1.KB238281               349 5 +      9836 -aagaa--
i amaVit1.KB238281         C 0 n 0
s anaPla1.KB742960            141292 1 +    531124 -----A--
i anaPla1.KB742960         C 0 I 5
s galGal4.chrZ              23195784 1 -  82363669 -----A--
i galGal4.chrZ             C 0 I 5
s allMis1.JH737334             63197 1 -    565068 -----A--
i allMis1.JH737334         C 0 I 5
e ornAna1.Contig22913           8772 0 +      9822 I
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637 0 -       895 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55059163 0 +  59856998 I
e anoCar2.chr2              23372733 0 + 199619895 I
e pseHum1.KB221303            460951 0 -   1055857 I
e zonAlb1.KB913240            788825 0 -    852449 I
e falChe1.KB398121           1475198 0 +   3546035 I
e macEug2.GL053575             11374 0 +     74274 I
e geoFor1.JH739942           1280732 0 +   5104860 I
e melGal1.chrZ              62956231 0 +  81011772 I
e apaSpi1.KB928558           3295625 0 -   3719163 I
e cheMyd1.KB497515           3641299 0 +   9092468 I
e chrPic2.chrUn_KK082917v1  12457941 0 -  13974604 I
e pelSin1.JH211373           2650239 0 -   4257854 I
e calJac3.chr3             190755530 1172 - 190850796 I
e melUnd1.JH556568           2080313 0 +   4296882 I
e monDom5.chr3             315954806 306 - 527952102 I
e taeGut2.chrZ              13217382 0 +  72861351 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=-15983.000000
s hg38.chr8_KI270814v1_alt     72237  6 +    141812 G---------TTATT
s ponAbe2.chr8              59041815  6 + 153482349 G---------TTATT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48115496  6 + 100215132 G---------TTATT
i nomLeu3.chr16            C 0 C 0
s saiBol1.JH378165          14119657  6 -  14256875 G---------TCACT
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3016939  7 -  10937097 G--------GTTTCT
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1503502 11 -   2937107 G----TTTTTTTTTT
i panHod1.KE114653         C 0 C 0
s bosTau8.chr27             18219097 10 +  45407902 G-----TTTTTTTTT
i bosTau8.chr27            C 0 C 0
s oviAri3.chr26             17845620 15 +  44077779 GGTTTTGTTTTTTTT
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17931094 10 +  44118849 G-----GGTTTTTTT
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18745261  6 -  39960074 G---------ATTCT
i equCab2.chr27            C 0 C 0
s felCat8.chrB1             20474984  6 + 206538554 G---------TTCCT
i felCat8.chrB1            C 0 C 0
s canFam3.chr16             18192836  6 -  59632846 G---------TTCCT
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         750312  6 -   2017862 G---------TTCCT
i odoRosDiv1.KB229312      C 0 C 0
s anaPla1.KB742960            141298  5 +    531124 ----------ACAAT
i anaPla1.KB742960         I 5 I 1
s galGal4.chrZ              23195790  5 -  82363669 ----------ACAAT
i galGal4.chrZ             I 5 I 1
s allMis1.JH737334             63203  5 -    565068 ----------ATGGT
i allMis1.JH737334         I 5 I 1
e ornAna1.Contig22913           8772  0 +      9822 I
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637  0 -       895 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55059163  0 +  59856998 I
e anoCar2.chr2              23372733  0 + 199619895 I
e pseHum1.KB221303            460951  0 -   1055857 I
e zonAlb1.KB913240            788825  0 -    852449 I
e colLiv1.KB375452           1391379 11 +   4234233 I
e falPer1.KB390921           1613136  0 +   3698665 I
e falChe1.KB398121           1475198  0 +   3546035 I
e macEug2.GL053575             11374  0 +     74274 I
e geoFor1.JH739942           1280732  0 +   5104860 I
e melGal1.chrZ              62956231  0 +  81011772 I
e amaVit1.KB238281               354  0 +      9836 I
e apaSpi1.KB928558           3295625  0 -   3719163 I
e cheMyd1.KB497515           3641299  0 +   9092468 I
e chrPic2.chrUn_KK082917v1  12457941  0 -  13974604 I
e pelSin1.JH211373           2650239  0 -   4257854 I
e calJac3.chr3             190755530 1172 - 190850796 I
e melUnd1.JH556568           2080313  0 +   4296882 I
e monDom5.chr3             315954806 306 - 527952102 I
e taeGut2.chrZ              13217382  0 +  72861351 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=171756.000000
s hg38.chr8_KI270814v1_alt     72243 50 +    141812 TTGTTTTAGGAGTTTACAATCTGTAGTCAGAAACTAATATAAAAATTTTG
s ponAbe2.chr8              59041821 50 + 153482349 TCGTTTTAGGAGTTTACAATCTGTAGTCAGAAACTAATATAAAAATTTTG
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48115502 50 + 100215132 TTGTTTTAGGAGCTTACAATCTGTAGTCAGAAACTAATATAAAAATTTTG
i nomLeu3.chr16            C 0 C 0
s saiBol1.JH378165          14119663 50 -  14256875 TTGCTTCAGGAGTTTATAATCTACAGTTAGAAACCAATATAAAAATTCTG
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3016946 50 -  10937097 TTCCTTCAGGAGCTTATAATCTAGAGTCAGAAGCTAATACAAAATGTTTG
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1503513 50 -   2937107 TTCCTTCAGGTGTTTATAACCTAGAGTCTGAAACTAATACAAAATATTTG
i panHod1.KE114653         C 0 C 0
s bosTau8.chr27             18219107 50 +  45407902 TTCCTTCAGGTGTTTATAATCTAGAGTCTGAAACTAACACAAAATATTTG
i bosTau8.chr27            C 0 C 0
s oviAri3.chr26             17845635 50 +  44077779 TTCCTTCAGGCCTTTATAACCTAGAGTCTGAAACTAATACAAAATATTTG
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17931104 50 +  44118849 TTCCTTCAGGTGTTTATAACCTAGAGTCTGAAACTAATACAAAATATTTG
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18745267 50 -  39960074 TTGCTTCAGGGGTTTATAATCTAGAGTCAGAAACTAACATAAAAATTTCA
i equCab2.chr27            C 0 C 0
s felCat8.chrB1             20474990 50 + 206538554 TTGCCTCAGGAGTTTAAAAACTAGAGTCAGAAACTAATATATAAATTCTG
i felCat8.chrB1            C 0 C 0
s canFam3.chr16             18192842 50 -  59632846 TTGCCTCAGTACTTTAAAAACTAGAGTAAGAAACTAATGTAAAGATTTTG
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         750318 38 -   2017862 TTGCCTCAGGAGTTTATAAAtt------------ttttttaaagatttta
i odoRosDiv1.KB229312      C 0 I 22
s colLiv1.KB375452           1391390 46 +   4234233 TTACTGTAGGCTTC---AAAGAATGATCACAGGTTGTTTTCGTGTATTC-
i colLiv1.KB375452         I 11 C 0
s anaPla1.KB742960            141304 46 +    531124 TTATTGTAGGCTTC---AAAGCATAATCACaggttgttttcatttattc-
i anaPla1.KB742960         I 1 C 0
s galGal4.chrZ              23195796 46 -  82363669 TTATTGTAGGCTTC---AAAGCATAATCACAGGTTGTTTTCATGTATTC-
i galGal4.chrZ             I 1 C 0
s allMis1.JH737334             63209 44 -    565068 TTGCTGTAGGCTTC--AAAAGCATGATCACAG---GTTTTCATTTATTC-
i allMis1.JH737334         I 1 C 0
e ornAna1.Contig22913           8772  0 +      9822 I
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637  0 -       895 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55059163  0 +  59856998 I
e anoCar2.chr2              23372733  0 + 199619895 I
e pseHum1.KB221303            460951  0 -   1055857 I
e zonAlb1.KB913240            788825  0 -    852449 I
e falPer1.KB390921           1613136  0 +   3698665 I
e falChe1.KB398121           1475198  0 +   3546035 I
e macEug2.GL053575             11374  0 +     74274 I
e geoFor1.JH739942           1280732  0 +   5104860 I
e melGal1.chrZ              62956231  0 +  81011772 I
e amaVit1.KB238281               354  0 +      9836 I
e apaSpi1.KB928558           3295625  0 -   3719163 I
e cheMyd1.KB497515           3641299  0 +   9092468 I
e chrPic2.chrUn_KK082917v1  12457941  0 -  13974604 I
e pelSin1.JH211373           2650239  0 -   4257854 I
e calJac3.chr3             190755530 1172 - 190850796 I
e melUnd1.JH556568           2080313  0 +   4296882 I
e monDom5.chr3             315954806 306 - 527952102 I
e taeGut2.chrZ              13217382  0 +  72861351 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=18625.000000
s hg38.chr8_KI270814v1_alt     72293 5 +    141812 AGTA---T
s ponAbe2.chr8              59041871 5 + 153482349 AGTA---T
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48115552 5 + 100215132 AGTA---T
i nomLeu3.chr16            C 0 C 0
s saiBol1.JH378165          14119713 5 -  14256875 AGTA---T
i saiBol1.JH378165         C 0 I 8
s orcOrc1.KB316932           3016996 5 -  10937097 AGAA---T
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1503563 5 -   2937107 AGAA---T
i panHod1.KE114653         C 0 C 0
s bosTau8.chr27             18219157 5 +  45407902 AGAA---T
i bosTau8.chr27            C 0 C 0
s oviAri3.chr26             17845685 5 +  44077779 AGAA---T
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17931154 5 +  44118849 AGAA---T
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18745317 5 -  39960074 AGTA---T
i equCab2.chr27            C 0 C 0
s felCat8.chrB1             20475040 5 + 206538554 AGTG---T
i felCat8.chrB1            C 0 C 0
s odoRosDiv1.KB229312         750378 5 -   2017862 agaa---t
i odoRosDiv1.KB229312      I 22 C 0
s colLiv1.KB375452           1391436 5 +   4234233 ACCA---T
i colLiv1.KB375452         C 0 C 0
s anaPla1.KB742960            141350 5 +    531124 acCA---T
i anaPla1.KB742960         C 0 C 0
s galGal4.chrZ              23195842 5 -  82363669 ACCA---T
i galGal4.chrZ             C 0 C 0
s allMis1.JH737334             63253 8 -    565068 ACCGTTTT
i allMis1.JH737334         C 0 C 0
e canFam3.chr16             18192892 0 -  59632846 C
e ornAna1.Contig22913           8772 0 +      9822 I
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637 0 -       895 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55059163 0 +  59856998 I
e anoCar2.chr2              23372733 0 + 199619895 I
e pseHum1.KB221303            460951 0 -   1055857 I
e zonAlb1.KB913240            788825 0 -    852449 I
e falPer1.KB390921           1613136 0 +   3698665 I
e falChe1.KB398121           1475198 0 +   3546035 I
e macEug2.GL053575             11374 0 +     74274 I
e geoFor1.JH739942           1280732 0 +   5104860 I
e melGal1.chrZ              62956231 0 +  81011772 I
e amaVit1.KB238281               354 0 +      9836 I
e apaSpi1.KB928558           3295625 0 -   3719163 I
e cheMyd1.KB497515           3641299 0 +   9092468 I
e chrPic2.chrUn_KK082917v1  12457941 0 -  13974604 I
e pelSin1.JH211373           2650239 0 -   4257854 I
e calJac3.chr3             190755530 1172 - 190850796 I
e melUnd1.JH556568           2080313 0 +   4296882 I
e monDom5.chr3             315954806 306 - 527952102 I
e taeGut2.chrZ              13217382 0 +  72861351 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=7847.000000
s hg38.chr8_KI270814v1_alt     72298 1 +    141812 A
s ponAbe2.chr8              59041876 1 + 153482349 A
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48115557 1 + 100215132 A
i nomLeu3.chr16            C 0 C 0
s saiBol1.JH378165          14119726 1 -  14256875 A
i saiBol1.JH378165         I 8 C 0
s panHod1.KE114653           1503568 1 -   2937107 A
i panHod1.KE114653         C 0 C 0
s bosTau8.chr27             18219162 1 +  45407902 A
i bosTau8.chr27            C 0 C 0
s oviAri3.chr26             17845690 1 +  44077779 A
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17931159 1 +  44118849 A
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18745322 1 -  39960074 A
i equCab2.chr27            C 0 C 0
s felCat8.chrB1             20475045 1 + 206538554 A
i felCat8.chrB1            C 0 C 0
s odoRosDiv1.KB229312         750383 1 -   2017862 g
i odoRosDiv1.KB229312      C 0 I 1
s colLiv1.KB375452           1391441 1 +   4234233 A
i colLiv1.KB375452         C 0 I 3
s anaPla1.KB742960            141355 1 +    531124 A
i anaPla1.KB742960         C 0 I 3
s galGal4.chrZ              23195847 1 -  82363669 A
i galGal4.chrZ             C 0 I 3
s allMis1.JH737334             63261 1 -    565068 A
i allMis1.JH737334         C 0 I 3
e canFam3.chr16             18192892 0 -  59632846 C
e ornAna1.Contig22913           8772 0 +      9822 I
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637 0 -       895 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55059163 0 +  59856998 I
e anoCar2.chr2              23372733 0 + 199619895 I
e pseHum1.KB221303            460951 0 -   1055857 I
e zonAlb1.KB913240            788825 0 -    852449 I
e falPer1.KB390921           1613136 0 +   3698665 I
e falChe1.KB398121           1475198 0 +   3546035 I
e macEug2.GL053575             11374 0 +     74274 I
e geoFor1.JH739942           1280732 0 +   5104860 I
e melGal1.chrZ              62956231 0 +  81011772 I
e amaVit1.KB238281               354 0 +      9836 I
e apaSpi1.KB928558           3295625 0 -   3719163 I
e cheMyd1.KB497515           3641299 0 +   9092468 I
e chrPic2.chrUn_KK082917v1  12457941 0 -  13974604 I
e pelSin1.JH211373           2650239 0 -   4257854 I
e calJac3.chr3             190755530 1172 - 190850796 I
e melUnd1.JH556568           2080313 0 +   4296882 I
e monDom5.chr3             315954806 306 - 527952102 I
e taeGut2.chrZ              13217382 0 +  72861351 I
e orcOrc1.KB316932           3017001 0 -  10937097 C
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=32616.000000
s hg38.chr8_KI270814v1_alt     72299 18 +    141812 GAAAGAGCAAAAGCACgt
s ponAbe2.chr8              59041877 18 + 153482349 GAAAGAGCAAAAGCATgt
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48115558 18 + 100215132 GAAAGAGCAAAAGTATgc
i nomLeu3.chr16            C 0 C 0
s saiBol1.JH378165          14119727 18 -  14256875 GAAACAGCAGAAGCAggc
i saiBol1.JH378165         C 0 C 0
s odoRosDiv1.KB229312         750385 18 -   2017862 gagagagagagagcacat
i odoRosDiv1.KB229312      I 1 C 0
s colLiv1.KB375452           1391445 18 +   4234233 GCAAGAGCAAAACCACCT
i colLiv1.KB375452         I 3 C 0
s anaPla1.KB742960            141359 18 +    531124 GCAAGAGCAAAACCACTT
i anaPla1.KB742960         I 3 C 0
s galGal4.chrZ              23195851 18 -  82363669 GCAAGAGCAAAACCACTT
i galGal4.chrZ             I 3 n 3
s allMis1.JH737334             63265 18 -    565068 GCAAGAGCAATACCACTT
i allMis1.JH737334         I 3 C 0
e canFam3.chr16             18192892  0 -  59632846 C
e felCat8.chrB1             20475046  0 + 206538554 C
e oviAri3.chr26             17845691  0 +  44077779 C
e bosTau8.chr27             18219163  0 +  45407902 C
e panHod1.KE114653           1503569  0 -   2937107 C
e capHir1.chr27             17931160  0 +  44118849 C
e ornAna1.Contig22913           8772  0 +      9822 I
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637  0 -       895 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55059163  0 +  59856998 I
e anoCar2.chr2              23372733  0 + 199619895 I
e pseHum1.KB221303            460951  0 -   1055857 I
e zonAlb1.KB913240            788825  0 -    852449 I
e falPer1.KB390921           1613136  0 +   3698665 I
e falChe1.KB398121           1475198  0 +   3546035 I
e macEug2.GL053575             11374  0 +     74274 I
e geoFor1.JH739942           1280732  0 +   5104860 I
e melGal1.chrZ              62956231  0 +  81011772 I
e amaVit1.KB238281               354  0 +      9836 I
e apaSpi1.KB928558           3295625  0 -   3719163 I
e cheMyd1.KB497515           3641299  0 +   9092468 I
e chrPic2.chrUn_KK082917v1  12457941  0 -  13974604 I
e pelSin1.JH211373           2650239  0 -   4257854 I
e calJac3.chr3             190755530 1172 - 190850796 I
e melUnd1.JH556568           2080313  0 +   4296882 I
e monDom5.chr3             315954806 306 - 527952102 I
e taeGut2.chrZ              13217382  0 +  72861351 I
e equCab2.chr27             18745323  0 -  39960074 C
e orcOrc1.KB316932           3017001  0 -  10937097 C
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=1225.000000
s hg38.chr8_KI270814v1_alt     72317 1 +    141812 c
s ponAbe2.chr8              59041895 1 + 153482349 c
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48115576 1 + 100215132 c
i nomLeu3.chr16            C 0 C 0
s saiBol1.JH378165          14119745 1 -  14256875 c
i saiBol1.JH378165         C 0 C 0
s odoRosDiv1.KB229312         750403 1 -   2017862 g
i odoRosDiv1.KB229312      C 0 C 0
s colLiv1.KB375452           1391463 1 +   4234233 C
i colLiv1.KB375452         C 0 n 0
s anaPla1.KB742960            141377 1 +    531124 C
i anaPla1.KB742960         C 0 n 0
s allMis1.JH737334             63283 1 -    565068 C
i allMis1.JH737334         C 0 n 0
e canFam3.chr16             18192892 0 -  59632846 C
e felCat8.chrB1             20475046 0 + 206538554 C
e oviAri3.chr26             17845691 0 +  44077779 C
e bosTau8.chr27             18219163 0 +  45407902 C
e panHod1.KE114653           1503569 0 -   2937107 C
e capHir1.chr27             17931160 0 +  44118849 C
e ornAna1.Contig22913           8772 0 +      9822 I
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637 0 -       895 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55059163 0 +  59856998 I
e anoCar2.chr2              23372733 0 + 199619895 I
e pseHum1.KB221303            460951 0 -   1055857 I
e zonAlb1.KB913240            788825 0 -    852449 I
e falPer1.KB390921           1613136 0 +   3698665 I
e falChe1.KB398121           1475198 0 +   3546035 I
e macEug2.GL053575             11374 0 +     74274 I
e galGal4.chrZ              23195869 3 -  82363669 I
e geoFor1.JH739942           1280732 0 +   5104860 I
e melGal1.chrZ              62956231 0 +  81011772 I
e amaVit1.KB238281               354 0 +      9836 I
e apaSpi1.KB928558           3295625 0 -   3719163 I
e cheMyd1.KB497515           3641299 0 +   9092468 I
e chrPic2.chrUn_KK082917v1  12457941 0 -  13974604 I
e pelSin1.JH211373           2650239 0 -   4257854 I
e calJac3.chr3             190755530 1172 - 190850796 I
e melUnd1.JH556568           2080313 0 +   4296882 I
e monDom5.chr3             315954806 306 - 527952102 I
e taeGut2.chrZ              13217382 0 +  72861351 I
e equCab2.chr27             18745323 0 -  39960074 C
e orcOrc1.KB316932           3017001 0 -  10937097 C
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=46390.000000
s hg38.chr8_KI270814v1_alt     72318 134 +    141812 aggtgcagt-------------------ggctctcagctgaaatcctagcattttggaaggccaaagtgagaggattgcttgagctcaggagttcaagacca--gcctgggc---------------aacatagtgag----------accttgtctc-----tatgaaa-----------aaACT--TTTAAAAATT--------
s ponAbe2.chr8              59041896 134 + 153482349 aggtgcagt-------------------ggcccacagctgaaatcctagcattttggaaggccaaagtgagaggattgcttgagctcaggagttcaagatca--gcctgggc---------------aacatagtgag----------accttgtctc-----tatgaaa-----------aaact--tttaaaaatt--------
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48115577 133 + 100215132 aggtgtggt-------------------ggctcacagctgaaatcctagcattttgggaggccaaagtgagagga-tgcttgagctcaggagttcaagacca--gcctgggc---------------aacatagtgag----------accttgtctc-----tatgaaa-----------aaaCT--TTTAAAAATT--------
i nomLeu3.chr16            C 0 C 0
s saiBol1.JH378165          14119746 128 -  14256875 aggtgtggt-------------------ggcttgcacctgctataataacattttgggaggcccaggtgggactattgcttgagctcatgagtttgatacca--gcctgaga---------------aattcagtaaa----------accccatctc-----tataaaa-----------aaaaT--------AATT--------
i saiBol1.JH378165         C 0 C 0
s odoRosDiv1.KB229312         750404 189 -   2017862 agaggagggagggtcagagggagaagcagactccctgctg-------agca----gggagcccgatgcggga------cttgatcctggaactccaggatcatgacctgagccgaaggcagtcgcttaaccaactgagccacccaggcgcccTGCCTCAGGAGTTTAAAAACCAAAGTTAGAAACTAATATAAAAATTTTGAATAT
i odoRosDiv1.KB229312      C 0 C 0
e canFam3.chr16             18192892   0 -  59632846 C
e felCat8.chrB1             20475046   0 + 206538554 C
e oviAri3.chr26             17845691   0 +  44077779 C
e bosTau8.chr27             18219163   0 +  45407902 C
e panHod1.KE114653           1503569   0 -   2937107 C
e capHir1.chr27             17931160   0 +  44118849 C
e ornAna1.Contig22913           8772   0 +      9822 I
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637   0 -       895 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55059163   0 +  59856998 I
e anoCar2.chr2              23372733   0 + 199619895 I
e pseHum1.KB221303            460951   0 -   1055857 I
e zonAlb1.KB913240            788825   0 -    852449 I
e colLiv1.KB375452           1391464   0 +   4234233 I
e allMis1.JH737334             63284   0 -    565068 I
e falPer1.KB390921           1613136   0 +   3698665 I
e falChe1.KB398121           1475198   0 +   3546035 I
e macEug2.GL053575             11374   0 +     74274 I
e galGal4.chrZ              23195869   3 -  82363669 I
e geoFor1.JH739942           1280732   0 +   5104860 I
e melGal1.chrZ              62956231   0 +  81011772 I
e anaPla1.KB742960            141378   0 +    531124 I
e amaVit1.KB238281               354   0 +      9836 I
e apaSpi1.KB928558           3295625   0 -   3719163 I
e cheMyd1.KB497515           3641299   0 +   9092468 I
e chrPic2.chrUn_KK082917v1  12457941   0 -  13974604 I
e pelSin1.JH211373           2650239   0 -   4257854 I
e calJac3.chr3             190755530 1172 - 190850796 I
e melUnd1.JH556568           2080313   0 +   4296882 I
e monDom5.chr3             315954806 306 - 527952102 I
e taeGut2.chrZ              13217382   0 +  72861351 I
e equCab2.chr27             18745323   0 -  39960074 C
e orcOrc1.KB316932           3017001   0 -  10937097 C
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=295.000000
s hg38.chr8_KI270814v1_alt     72452 1 +    141812 A
s ponAbe2.chr8              59042030 1 + 153482349 a
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48115710 1 + 100215132 A
i nomLeu3.chr16            C 0 C 0
s saiBol1.JH378165          14119874 1 -  14256875 T
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3017001 1 -  10937097 A
i orcOrc1.KB316932         C 0 C 0
s odoRosDiv1.KB229312         750593 1 -   2017862 A
i odoRosDiv1.KB229312      C 0 C 0
e canFam3.chr16             18192892 0 -  59632846 C
e felCat8.chrB1             20475046 0 + 206538554 C
e oviAri3.chr26             17845691 0 +  44077779 C
e bosTau8.chr27             18219163 0 +  45407902 C
e panHod1.KE114653           1503569 0 -   2937107 C
e capHir1.chr27             17931160 0 +  44118849 C
e ornAna1.Contig22913           8772 0 +      9822 I
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637 0 -       895 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55059163 0 +  59856998 I
e anoCar2.chr2              23372733 0 + 199619895 I
e pseHum1.KB221303            460951 0 -   1055857 I
e zonAlb1.KB913240            788825 0 -    852449 I
e colLiv1.KB375452           1391464 0 +   4234233 I
e allMis1.JH737334             63284 0 -    565068 I
e falPer1.KB390921           1613136 0 +   3698665 I
e falChe1.KB398121           1475198 0 +   3546035 I
e macEug2.GL053575             11374 0 +     74274 I
e galGal4.chrZ              23195869 3 -  82363669 I
e geoFor1.JH739942           1280732 0 +   5104860 I
e melGal1.chrZ              62956231 0 +  81011772 I
e anaPla1.KB742960            141378 0 +    531124 I
e amaVit1.KB238281               354 0 +      9836 I
e apaSpi1.KB928558           3295625 0 -   3719163 I
e cheMyd1.KB497515           3641299 0 +   9092468 I
e chrPic2.chrUn_KK082917v1  12457941 0 -  13974604 I
e pelSin1.JH211373           2650239 0 -   4257854 I
e calJac3.chr3             190755530 1172 - 190850796 I
e melUnd1.JH556568           2080313 0 +   4296882 I
e monDom5.chr3             315954806 306 - 527952102 I
e taeGut2.chrZ              13217382 0 +  72861351 I
e equCab2.chr27             18745323 0 -  39960074 C
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=6006.000000
s hg38.chr8_KI270814v1_alt     72453 1 +    141812 T
s ponAbe2.chr8              59042031 1 + 153482349 T
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48115711 1 + 100215132 T
i nomLeu3.chr16            C 0 C 0
s saiBol1.JH378165          14119875 1 -  14256875 T
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3017002 1 -  10937097 T
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1503569 1 -   2937107 T
i panHod1.KE114653         C 0 C 0
s bosTau8.chr27             18219163 1 +  45407902 T
i bosTau8.chr27            C 0 C 0
s oviAri3.chr26             17845691 1 +  44077779 T
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17931160 1 +  44118849 T
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18745323 1 -  39960074 T
i equCab2.chr27            C 0 C 0
s felCat8.chrB1             20475046 1 + 206538554 T
i felCat8.chrB1            C 0 C 0
s odoRosDiv1.KB229312         750594 1 -   2017862 T
i odoRosDiv1.KB229312      C 0 C 0
e canFam3.chr16             18192892 0 -  59632846 C
e ornAna1.Contig22913           8772 0 +      9822 I
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637 0 -       895 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55059163 0 +  59856998 I
e anoCar2.chr2              23372733 0 + 199619895 I
e pseHum1.KB221303            460951 0 -   1055857 I
e zonAlb1.KB913240            788825 0 -    852449 I
e colLiv1.KB375452           1391464 0 +   4234233 I
e allMis1.JH737334             63284 0 -    565068 I
e falPer1.KB390921           1613136 0 +   3698665 I
e falChe1.KB398121           1475198 0 +   3546035 I
e macEug2.GL053575             11374 0 +     74274 I
e galGal4.chrZ              23195869 3 -  82363669 I
e geoFor1.JH739942           1280732 0 +   5104860 I
e melGal1.chrZ              62956231 0 +  81011772 I
e anaPla1.KB742960            141378 0 +    531124 I
e amaVit1.KB238281               354 0 +      9836 I
e apaSpi1.KB928558           3295625 0 -   3719163 I
e cheMyd1.KB497515           3641299 0 +   9092468 I
e chrPic2.chrUn_KK082917v1  12457941 0 -  13974604 I
e pelSin1.JH211373           2650239 0 -   4257854 I
e calJac3.chr3             190755530 1172 - 190850796 I
e melUnd1.JH556568           2080313 0 +   4296882 I
e monDom5.chr3             315954806 306 - 527952102 I
e taeGut2.chrZ              13217382 0 +  72861351 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=1588347.000000
s hg38.chr8_KI270814v1_alt     72454 427 +    141812 TTTAAAAAGAAAGCAAAAGCAAATATGAGAGAAAACATTAGAAATCAGAGCTTGGGCAAAGAGTTCAGTGTCAGCAAAGCAGCTCTGCCTTGGGGTATCTCTGGAACATCCTGGCTTTCTCTATAGGCCCCACCACATGGCCTTTTCCCATCACTTGGAAG--------------------------CCACCATATCATGTCAGG-TTTTCCCTCAAACTTTTTAACCTAatttattctgtcaaaaaatatata--------------------------------tctattgaatctttactgtgagc----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------tgggcactgtcctatgtaatgataatatagcaaggatataa-------------------------aacaaaaatgcttaccgtcatacagattacattcatgtgaggcaggacacactattaacaaaataactat------------------ataaaata-cataatattccaaaagg-tgataa-cggtacagagaaaaattaag-catggaagggggata
s ponAbe2.chr8              59042032 427 + 153482349 TTTAAAAAGAAAGCAAAAGCAAATATGAGAGAAGACATTAGAAATCAGAGCTTGGGCAAAGAGTTCAATGTGAGCAAAGCAGCTCTGCCTTGGGGTATCTCTGGAACATCCTGGCTTTCTCTATAGGCCCCACCACATGGCCTTTTCCCATCACTTGGAAG--------------------------CCACCATATCATGTCAGG-TTTTCCCTCAAACTTTTTAACCTAATTTATTGTATCAAAAaatatata--------------------------------tctattgaatctttactgtgagc----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------tgggcactgtcctatgtaatgataatacagcaaggatataa-------------------------aacaaaaatgcttaccgtcatacagattacattcatgtgagggaagacagactattaacaaaataactat------------------ataaaata-cataatattccaaaaga-tgataa-cggtacagagaaaaattaag-catggaatggggata
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48115712 427 + 100215132 TTTAAAAAGAAAGCGAAAGCAAATATGAGAGAAAACATTAGAAATCAGAGCTTGGGCAAAGAGTTCAATGTGAGCAAAGCAGCTCTGCCTTGGGGTATCTCTGGAACATCCTGGCTTTCTCTATAGGCCCCACTACATGGCCTTTTCCCATCACTTGGAAG--------------------------CCACCATATCATGTCAGA-TTTTCCCTCAAACTTTTTAACCTAatttattctatcaaaaaatattta--------------------------------tctattgaatctttattgtgagc----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------tggccactgtcctatgtaatgataatacagcaaggatataa-------------------------aacaaaaatgcttactgtcatacaggttacattcatgtgagggaagacagactattaacaaaataactat------------------ataaaata-cataatgttccaaaagg-tgataa-cggtacagagaaaaattaag-catggaagggggata
i nomLeu3.chr16            C 0 C 0
s saiBol1.JH378165          14119876 420 -  14256875 ATAAAAGGCAGAGCAAAGGCAAATGTGAAAGAAAACATTAGAAATCAGAGCTTGGGCAAAGAGTTCAATGTGAGCAAAGCAGCTCTGCCCTGGGG-GCCTCTGGAGCATCCCGGCTG----GAGAGGCCTAGCCACATGGCCCTTTCCCATCCCTAAGAAC--------------------------CGTCTACCTCATGCCAGGATTTTACCCCAAACTTCTCAACCTAatttatttagccaaaacatattta--------------------------------ttttttgaatccttaccaagact----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------gaggcactattctacacaatgaaaatatgacggtgatataa-------------------------aacaaaaatatttaccctcgggcaaattatattccagtgagaaaaggtagatcatttacaaaataaatat------------------gtaaaatg-tataatatgccagaagg-caataagtggcacagagaaactgtaag-catgggagtgg----
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3017003 459 -  10937097 TCCAAAGAAAGAGCAAAAACAAACATGAGAGAACAGATGAGAAACCAGAACTTGGGCAAATATTTCTACGTAGACAAAGCAGTTCTGACTTGGGAGATCTCTGGAGCTTTTCAACATCCTCTAGAAGTTCTACCACTTGG---TTCTCCATCACTGGAGAA------------------------CCCCCCCATGTCATGTCAGTTTCTTTTCCCAAAGTCCTCCACCTAATTCATTTAAACAAAT-ATCTCTAtgtgtacatgtgtgtgtgcgtgcgtgtgtgtgtgtataaaatgctcactaggagt----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------taggcactgttataagcaatgaaaacgcaacaatgacataa-------------------------aacaaaaatatttaccctcattcagattacagtctggtgggtgaaggcagacgaccaacaaaataaacat------------------gtaaaata-tataatatcctagcagg-tgataatgtgtacagagaaaaattaat-cagggaagagagatt
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1503570 460 -   2937107 TCCAGAGAAAGAGCAAACACGAACGTGAGAGAAAAGATGAGAAACCAGAACTTGGGCAAGTATTTCAATGGAGACAAAGCAGTTCTGACTTGGGAGGTCTCTGGAGCTATTCAGCTTCCTCTAGAAGGTCAACCATGTGGACTTTTTTCATCACTGGAGGAAGTcccccaccaccccaccccaccccccgccaGGTCACATCAGTTTCTTTTCCCAAAGTCTTGTACCTATTTCATTTAAACAAAT-ATATCTA--------------------------TGTGTGTGtataaaatactcactatgagt----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ttggcactgttataagcagtgaaaatgtagcaatgacataa-------------------------aacaaaaatatttaccctcattcagattacattctagtgggtgaaggcagaccatcagcaaaataagcat------------------gcaaggtc-tataatgtgctagcaga-tgataatgcgcacaaaggaaaacttaa-caagaaaaagagatt
i panHod1.KE114653         C 0 C 0
s bosTau8.chr27             18219164 452 +  45407902 TCCAGACAAAGAGCAAATACAAACATGAGAGAAAAGATGAGAAACCAGAACTTGGGCAAGTATTTCAATGGAGACACAGCAGTTCTGACTTGGGAGATCTCTGGAGCTACTCAACTTCCTCTGGGAGGTCAACCACATAGACTTTTTTCATCACTGGAGGAAGTCCCCCA----------CCACCCCCCGCCAGGTCACATCAGTTTCTTTTCCCAAAGTCTTACACCTGTTTCATTTAAAcaaacaatatcta--------------------------tgtgtgtatataaaatattcactatgagt----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ttggcactgttataagcagtgaaaatgtaacaatgacataa-------------------------aacaaaaatatttaccctcattcagattacattctagtgggtgaaggtggaccatcagcaaaataagtat------------------gcaagata-tataatgttctagcaga-tgataatgtgcacaacggaaaacttaagcaagaaaaagagatt
i bosTau8.chr27            C 0 C 0
s oviAri3.chr26             17845692 450 +  44077779 TCCAGAGAAAGAGCAAACACAAACGTGAGAGAAAAGATGAGAAACCAGAACCTGGGCAAGTATTTCAATGGAGACAAGGCAGTTCTGACTTGGGAGGTCTCTGGAGCTATTCAGCTTCCTCTAGAAGGTCAACCATGTGGACTTTTTTCATCACTGGAGGAAGTCCCCCA----------CCACCCCCCACCAGGTCACATCAGTTTCTTTTCCCAAAGTCTTGTACCTATGTCATTTAAACAAAT-ATATCTA--------------------------TGTGTGTGtataaaatactcactatgagt----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ttggcactgtcataagcagtgaaaatgtagtaatgacataa-------------------------aacaaaaatatttgccctcattcagattacattctagtgggtgaaggcagaccatcagcaaaataagtat------------------gcaaggtc-tataatgttctagcaaa-tgataatgcgctcaaaggaaaacttaa-caagaaaaagagatt
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17931161 451 +  44118849 TCCAGAGAAAGAGCAAACACAAACGTGAGAGAAAAGATGAGAAACCAGAACCTGGGCAAGTATTTCAATGGAGACAAGGCAGTTCTGACTTGGGAGGTCTCTGGAGCTATTCAGCTTCCTCTAGAAGGTCAACCATGTGGACTTTTTTCATCACTGGAGGAAGTCCCCCA----------CCACCCCCCACCAGGTCACATCAGTATCTTTTCCCAAAGTCTTGTACCTATTTCATTTAAACAAAT-ATATCTG--------------------------TGTGTGTGtataaaatactcactatgagt----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ttggcactgtcataagcagtgaaaatgtagcaatggcataa-------------------------aacaaaaatatttaccctcattcagattacattctagtgggtgaaggcagaccatcagcaaaataagtat------------------gcaaggtc-tataatgttctagcaga-tgataatgggcacaaaggaaaacttaagcaagaaaaagagatt
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18745324 433 -  39960074 TCCAAAGAAAGAGCACAAACACACATGAGAGAAAAGATGAGAAACCCGAACTTGGACAAATATTTCAATGTGGACAAAATAGTTCTGCCTTGGGAGATCTCTGGAGCTTTCCAGCTTCCTCTAGAAGCTCTACCACATGGCCTTTTCCCATCACTGGAGAA-------------------------CCCTCCATATCATGTCACTTTCTTCTCCCAAACTCTTCCACCTAATTCATTCAAATAATT-ATA--TA--------------------------TGCatatatatttaatgcttactatgagc----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------taggcattgttataagcaatgaaaatgcagcaatgatataa-------------------------aataaaaatacttaccctcgttcagattacattctagttggtgaagacagactatcaacaaaataaatat------------------gtaaaata-tataatattctagaagg-taatgaagggtacagagaaaaattaag-cagggaagagggcta
i equCab2.chr27            C 0 C 0
s felCat8.chrB1             20475047 463 + 206538554 TCCAA--AAAGAGCAAAAACAAACATGAGAGAAAAGATGAGACACCAGAACTTGGAAAAATATTTCAAGGTGGACAAAGCAGTTCTTCCATGAGAGATCTCTGGAGCTTTTCAGCTTCTTATACAGGCTCCAGTACATTGCCTTTTCCCCTCACTGGTGAG-------------------------CCCTCCGTGTCACGTCATTTTCTTTTCCCAAACCCTTCCACCTAattcattcaaaca----------------------------------------gaatatatagaaagctcaatagaagc----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------caggtattgttttaagcaatgaaaatgcagcaaaaatataaaacaaagta-tttaagaatgtgtataacaaaaatatttaccctcattcagattacattctcatgggtgaagacagaccatcaataaaatagctataaagtagacagaccatcaataaaatagcttcatattctagaagg-tggtaagaggtttagagaaacaataag-ctaggaagaaggaca
i felCat8.chrB1            C 0 C 0
s canFam3.chr16             18192892 630 -  59632846 CCCAAAAAAAGGGCAAAAACAAACATGAGGGAAAAGATCAGAAACCAGAACTTGGACAAGAATTTCGGTGTAGACAAAGCGGTTCCACTGTGAGAGATCTCTGGAGCTATTCAGCATCCAATACAGGCTCTGCTACATGACCTTTCCCCCTCACTGGAGAA-------------------------CCTTCCATGTCATGTGAGTTTCTTTTCCCAAACTCTTCCACTTACTTCATTCAAAC------------------------------------------AATATATAGAATGCTTAATAGAAGCCAGTTGCTAGttttttaaaagattttatttatttattcaagagaaacacagagagagaggcaaagatataggcgggggagaggcaggctccctgtgtagaacctgatgcggggacttaaccccaagacctcaggatcacctcctgagtcaaaggcagatgatgctcaacccaggtgccccAAgccagttgctgttttaagcaatgaaaatgcagcaatgatataaaacaaaatatttttaaaatatagaaaacaaaaatatttaccttcatttagattacattctaatgggtggagacagaccatcaataaaataaatat------------------gtcaaata-tataatattctagaaggttgataaggggtacagagaaaaattaag-acaggaaaggggata
i canFam3.chr16            C 0 I 204
s odoRosDiv1.KB229312         750595 441 -   2017862 TCCAAATAAAGGGCAAACACAAACTTGAGGGAAAAGATGAGAAACCAGAACTTGGACAAGTATTTCAGTGTGGACAAAGCAGTTCTACTGTGAGAGATCTCTGGAGCTTTTCAGTGTCCTGTACAGACTATACTACATGGCCTTTTCCCCTCACTGGAGAA-------------------------CCCTCCACACCATGTCAGTTTCTTTACCCAAGCTCTTCCACCTAattcattcaaaca----------------------------------------gaatatatagaatgcttagtaggggc---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------attgttttaagcaacgaaaatgcagcaatgatataaaacaaaata-tttaaaaatatatacaacaaaagtatttaccctcattcagattacattttagtaggtgaagatggaccatcaataaaataaatat------------------gtaaaata-cataatattctagaagg-tgataaggggtacagagaaaaattaag-ccaggaaaagggata
i odoRosDiv1.KB229312      C 0 C 0
e ornAna1.Contig22913           8772   0 +      9822 I
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637   0 -       895 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55059163   0 +  59856998 I
e anoCar2.chr2              23372733   0 + 199619895 I
e pseHum1.KB221303            460951   0 -   1055857 I
e zonAlb1.KB913240            788825   0 -    852449 I
e colLiv1.KB375452           1391464   0 +   4234233 I
e allMis1.JH737334             63284   0 -    565068 I
e falPer1.KB390921           1613136   0 +   3698665 I
e falChe1.KB398121           1475198   0 +   3546035 I
e macEug2.GL053575             11374   0 +     74274 I
e galGal4.chrZ              23195869   3 -  82363669 I
e geoFor1.JH739942           1280732   0 +   5104860 I
e melGal1.chrZ              62956231   0 +  81011772 I
e anaPla1.KB742960            141378   0 +    531124 I
e amaVit1.KB238281               354   0 +      9836 I
e apaSpi1.KB928558           3295625   0 -   3719163 I
e cheMyd1.KB497515           3641299   0 +   9092468 I
e chrPic2.chrUn_KK082917v1  12457941   0 -  13974604 I
e pelSin1.JH211373           2650239   0 -   4257854 I
e calJac3.chr3             190755530 1172 - 190850796 I
e melUnd1.JH556568           2080313   0 +   4296882 I
e monDom5.chr3             315954806 306 - 527952102 I
e taeGut2.chrZ              13217382   0 +  72861351 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=-6638.000000
s hg38.chr8_KI270814v1_alt     72881 3 +    141812 cac
s ponAbe2.chr8              59042459 3 + 153482349 cgc
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48116139 3 + 100215132 tgc
i nomLeu3.chr16            C 0 C 0
s orcOrc1.KB316932           3017462 2 -  10937097 ag-
i orcOrc1.KB316932         C 0 I 1
s panHod1.KE114653           1504030 2 -   2937107 ag-
i panHod1.KE114653         C 0 I 1
s bosTau8.chr27             18219616 2 +  45407902 ag-
i bosTau8.chr27            C 0 I 1
s oviAri3.chr26             17846142 2 +  44077779 ag-
i oviAri3.chr26            C 0 I 1
s capHir1.chr27             17931612 2 +  44118849 ag-
i capHir1.chr27            C 0 I 1
s equCab2.chr27             18745757 2 -  39960074 ag-
i equCab2.chr27            C 0 I 1
s felCat8.chrB1             20475510 1 + 206538554 -g-
i felCat8.chrB1            C 0 I 2
s odoRosDiv1.KB229312         751036 2 -   2017862 ag-
i odoRosDiv1.KB229312      C 0 I 1
e canFam3.chr16             18193522 204 -  59632846 I
e ornAna1.Contig22913           8772 0 +      9822 I
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637 0 -       895 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55059163 0 +  59856998 I
e anoCar2.chr2              23372733 0 + 199619895 I
e pseHum1.KB221303            460951 0 -   1055857 I
e zonAlb1.KB913240            788825 0 -    852449 I
e colLiv1.KB375452           1391464 0 +   4234233 I
e allMis1.JH737334             63284 0 -    565068 I
e falPer1.KB390921           1613136 0 +   3698665 I
e falChe1.KB398121           1475198 0 +   3546035 I
e macEug2.GL053575             11374 0 +     74274 I
e galGal4.chrZ              23195869 3 -  82363669 I
e geoFor1.JH739942           1280732 0 +   5104860 I
e melGal1.chrZ              62956231 0 +  81011772 I
e anaPla1.KB742960            141378 0 +    531124 I
e amaVit1.KB238281               354 0 +      9836 I
e apaSpi1.KB928558           3295625 0 -   3719163 I
e cheMyd1.KB497515           3641299 0 +   9092468 I
e chrPic2.chrUn_KK082917v1  12457941 0 -  13974604 I
e pelSin1.JH211373           2650239 0 -   4257854 I
e calJac3.chr3             190755530 1172 - 190850796 I
e melUnd1.JH556568           2080313 0 +   4296882 I
e monDom5.chr3             315954806 306 - 527952102 I
e taeGut2.chrZ              13217382 0 +  72861351 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e saiBol1.JH378165          14120296 0 -  14256875 C
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=2555408.000000
s hg38.chr8_KI270814v1_alt     72884  843 +    141812 aacactggaagtgggTAGAAGTAAAGACATATCAAATGCTCAAGGAAGGTGTAGTAGGCAGAATAATAG-CTTTCCTAC--GTCTGTATctttatatggc-gaagag-acttgtgggtgtgattaagttatggatcatgagatgagaagattattccggattagccaggtgaactcagtgtaatcacgagagtgattataagcaaaagaaggaggcaagaaagtcagaggcaagagatg-tggtgacagaggtcagaataatgtagttgctgactggaaggaagccatgagccatgggatgtgtgcattctctcaacgctggtgaaggcaagaaaatgaattctc--ccctagagGATTATAGGGGAGAAGCgtgttccttttagcaactaaatgtatgctaatttattccagtagtc---aggaaactaatat---------------------------------------------------------agaaagtctttctgagaagacaa---------------------catt-----------------------------------------------------------------------------------------tgaacaaagactccaaggaggtaagtgcacca-gctttgcagatacctggggaagagcactccaggaagaaaaggcag----acagcagggtacacgccctgatcaggagcatgtctagcccagtggcatgaagtagagcaagactgggagtcagaagggtaggaggagacaggtgagagagaga--tttagttgagtcaactcacttacagcttca------ttatc---tttaagaacgttggcttagtctgaatgaCACATGGAGTATAGAAGAGTCTGTGAATATTTATAGATATTCTGAATGTTTGCAAGATAAATAAAagtggtgcactggta---aacctggttg--ggggaaggaa-aaaaaagcccagatttgtagcatttgctgatttc------------------------------------------------------------ca--------------------------------------------------------------------------------ttgtgtgaatattt
s ponAbe2.chr8              59042462  835 + 153482349 aacactgg------CTAGAGGTCAAGACATATCAAATGCTCAAGGAAAGTGTAGTAGGCAGAATAATAG-CTTTCCTAC--GTCTGTATctttatatggc-aaagag-atttgtgggtgtgattaagttatggatcatgagatgaggagattattctggattagccaggtgaactcagtgtaatcacaagagtgattataagcaaaagaaggaggcaagaaagtcagaggcaagagatg-tggtgacagaggtcagaatgatgtagttgctggctggaaggaagccatgagccatgggatgcgtgcatcctctcaaagctggtgaaggcaagaaaatgaattctc--ccctagagGATTATAGGAGAGAAGCAtgttctttttagcaactaaatgtatgctaatttattccagtagtc---aggaaactaatat---------------------------------------------------------agaaagtctttctgagaagataa---------------------catt-----------------------------------------------------------------------------------------tgaacaaagactccaaggaggtaagcgcacca-gctttgcagatacctggggaagagcactccaggaagaaaaggcag----acagcagggtacacgccttgatcaggagcatgtctagcccagtggcatgaagtagagcaagactgggagtcagaagtgtaggaggagacaggtgagagagagagaTTTAGTTGAGTCAACTCAC----AGCTTCA------TTATC---TTTAAGAACGTTGGCTTAGTCTGAATGACACATGGAGTATAGAAGAGTCTGTGAATATTTATAGATATTATGAATATTTGCAAGAGAAATAAAagtggtgcactggta---aacctgtttg--ggggaaggaa-aaaaaagcccagatttgtagcatttgctgatttc------------------------------------------------------------ca--------------------------------------------------------------------------------tcgtgtgaatattt
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48116142  843 + 100215132 aacactggaagtgggTAGAAGTAAAGACATATCAAATGCTCAAGGAAGGTGTAGTAGACAGAATAATAG--TTTCCTAC--GTCTGTATctttatatggc-aaagag-acttgtgggtgtgattaagttacggatcatgagatgaggagattattctggattagccaggtgaactcagtgtaatcacaagagtgattataagcaaaagaaggaggcaagaaagtcagaggcaagagatg-tggtgacagaggtcagaatgatgtagttgctggctgaaagaaagccatgagccatgggatgtgtgcttcctctcaaagctggtgaaggcaaaaaaatgaattctc--ccctagagGATTATAGGGGAGAAGCATGTTCTTTTTAGCAACTAAATGTATGCTAATTTATTCCAGTAGTC---AGGAAACGAATAT---------------------------------------------------------Agaaagtctttctgagaagataa---------------------catt-----------------------------------------------------------------------------------------cgaacaaagactccaaggaggttagagcacca-gctttgcagatacctggggaagagcgctccaggaagaaaaggcag----acagcagggtacacgccctgatcaggagcatgtctagcccagtggcatgaagtagagcaagactgggagtcagaagggtaggaggagacaggtgagagagagagaTTTAGTTGAGTCAACTCAC----AGCTTCATTATCTTTATC---TTTAAGAACGTTGGCTTAGTCTGAATGACACATGGAGTATAGAAGAGTC--TGAATATTTACAGATTTTCTGAATGTTTACAAGAGAAATAAAagtggtgcactggta---aacctggtt---ggggacggga-aaaaaagcccagatttgtggcatttgctgatttc------------------------------------------------------------ca--------------------------------------------------------------------------------ttgtgtgaatattt
i nomLeu3.chr16            C 0 C 0
s saiBol1.JH378165          14120296  809 -  14256875 --------------atggctgtgaagatggacagagtgCTCAAGGAGTGGGTAGCAGGCAGAAGAATGG-CCTTTCTGCATGTCCATATCTCtatatggcaaaaggg-acttgccaatgtgatgaagttaaggattgtgagatgaggagattattctggattagccaggtgagcccaaagtcatcacaggggtacttaaaagcaaaagagggaggcaggagattcagaggcaagaagtattgacagctggggtcagaatgatgcagctgctgactggaagg-ggccacaagccaaaggatgtaggcatcctctcaaagctggagaaggtaagaaagtggtttctctgccctagag------------agagtctgtgtcttttaggctataaatgtgtgctaatttatcccagcagtcat-aagaaactaatat---------------------------------------------------------agaaggtctcattgagaagatga---------------------catt-----------------------------------------------------------------------------------------tgaacaaagattccggggaagcaagggcacca-gctatg-------atgggggagagcactccaggaagaagaggcaggcaaacagcagggt-----------------gcatgcctagcccaggagcgtgaagtagag-aacactgggagtcagaaggctgagagaaaacaggtcagagagagggactgggatgggtcaactcacactcagcctca------ttggctattgtaaggactttggcttattctgagtgaaaCACAGAGTATAGAAGAGTCTATGAATATTTGAAGAAATTCTGAATGTTTACAAGAAGAATAAAagtggtatgctagta---aacctattgg-ttgagttggca-ggggaagcccagatttgcagcatttgcttatttc------------------------------------------------------------ca--------------------------------------------------------------------------------ttgtgtaaatattt
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3017465  803 -  10937097 agtgctgagagagaataggtacaaagtcaaataggatgctcaaggaaggTACAGTG-GCAGAATAATGG-TCCCCAAACATATCCATGTccttatacagcaaaaggg-ctttccagatgtgattaagtgaagaatcatgagatgaggagattatcatgtgttatccaggtgggctcaatgtaatcgcaagggttcctaaaagggaaagaggcaggtcacagagtcagaggcaggggatg-tgaagatagaggttggagtgatacaaccattgcctggaagggggccacaggacacagaatgcgagcatcccctagaagttggaaaaggtaaggaaatagattctt--gctgagag----------agaatatatgttcttttaaaccactgaatttgtattaattgattacagcagtaat-aagaaactaatat---------------------------------------------------------agatgatctcactgagaaggtga---------------------catt-----------------------------------------------------------------------------------------tgagcaaagacttgaaggaggtaag-gaacca-ggtctacagatatctgggggaagggtgctccaggaaaaaaggcaa----acagcgggcaag--ggcctgattgcaaacagggctctccacgtgga--gaagcagagcaatgctgggagtcaggcgaataggatgaggcaggtcagagtgtgg------ggtgggtcagctcatttagggcttta------ttggccactgaaggcacttcggcttattctgagtgagacacggagtgtaggaggggctaggaatacttacaggaattctgaatgtttacaaaaagaATAAAAGTGGTGTGCTGGTA---AACCa-------------------------------tttgtagcatttgctaatttc------------------------------------------------------------ca--------------------------------------------------------------------------------tggtgtaaatactc
i orcOrc1.KB316932         I 1 I 20
s panHod1.KE114653           1504033 1001 -   2937107 aattctgggagagagcaggtac-aagtcaagtaggatggacaaggaaggcACAGTA-GCAGAATAATGA-TGCCCAAACATATCCACATccttatagggtgaaaggg-ctatgcagacgcgattaagtgaaggaccatcgaatggggagagtagcgtgtgttatccaggtgggcccaatgtgatcacaagagtccttaggagggaaagaggcaggtggtagagagagaggcagcaggtg-taaggacagaggctggggtgata-cactgctgcctggaagggagccatgagacgcagaacgtgagcctcttctagaagctgggaaaagtaaggaaacagattctT--actgggag----------agaatgtgtgttcttttaagccactgaatgtgtactaattggccacagcagtaataaaaaaactaatac---------------------------------------------------------aGATGATCTCACTGAGAAGGtgaaaagggaagcctggcgtgctgcagt-----------------------ccgtgcatcacaaagagtcgaacatgactgagcgattgaacaACAACAGcgccgataatgtgacgttgagcaaagttttgcaggaggtgag-gagcca-ggtaggcaggtatctgaggaaaaggtgttccaggagcaaaggcaa----actgtggggagaatgccctgatgagaaaagggcctctccagatgga--gaagcagagcatccctgggagtggggtgaacaggaagaggcaggttagagcgtgt------ggcgcatccgctcgtttaggcctttg------ctggccactgtagacgctttggcttatcctgagtgagacagAG-GTGTAGGAAGAGCTAGGAATATTCATAGGAATTCTGAGTGTTTATGAGGAGAATAGAAGTGGTGTTCTGGTA---AATCATGGTA--GGTGAGGGTG-GGGAGAGTCTGGGTTTGTAGCATTTGCTgatttccatggacagaggcacctggtgggctacagt------------------------------ct---------------------------agggggtcacagagtcgggcacgactgaaagtgactaaacacgcatgcgtgcCTGGTGTAGATACTC
i panHod1.KE114653         I 1 I 20
s bosTau8.chr27             18219619 1001 +  45407902 aattctgggagagagcaggtacaaagtcaagtacgatggacaaggaagacACAGTA-GCAGAATAATGA-TGCCCAAACATATCCACATcctcacagggccaaaggg-ctatgcagatgcgattaagcgaaggaccatcggatggggagattagcgtgtgttatccaggtgggctcaatgtgatcacaagggtccttatgtgggaaagaggcaggtggtagagacagaggcagaaggtg-taaggacagaggctggagtaata-aactgctgcctgggagggagtcatgagacacagaacgtgagcctcttctaaaagctgggaaaagtaaggaaacagactctT--ATTGGGAG----------AGAATGtgtg-----ttaagtcgctgaatttgtaccaattgaccacagcagtaataaaaaaactaatac---------------------------------------------------------aGATGATCTCACTGAAAAGGtgaaaagagaagcctggcgtcctgcagt------------ccatgtaccacc-----------aagagttgaacatgactgagcgactgaacaACAAGAGCCctgagaaggtgacattgagcaaaggtttgcaggaggtgag-gaacca-ggtaggcaggtatctgaggaaaaggtgttccaggaaaaaaggcaa----actgcagcaagattgccctgatgagaaaagggcctctccagatgga--gaagcagaacagccccgggagtggggcaaacaggatgaggcaggttagagagtgg------ggtgcatccgctcgtttagggctttg------ctggccactgtagacgctttggcttattctgagtgagacagggagTGTAGGAAGAGCTAGGAATATTCATAGGAATTCTGAGTGTTTACGAGGAGAATAAAAGTGGTGTCCTGGTA---AATAATGGTA-GGGTGGGGGTG-GGGAGAGTCTGGGTTTGTAGCATTTGCTgatttccatggacagaggtgcctggtgggctacagtccatggggtcacaaagagtcagacacgactga-------------------------------------------------aagtga------ctaaacacgcatgcgtgcatggtgtagatactc
i bosTau8.chr27            I 1 I 20
s oviAri3.chr26             17846145  997 +  44077779 aattctgggaaagagcaggtac-aagtcaagtaggatggacaaggaaggcACAGTA-GCAGAATAATGA-TGCCCAAACATATCCACATcctcacagggccaaaggg-ctacgcagacgcgattaagtgaaggaccatcggatggggagattagcgtgtgttatccaggtgggcccaatgtgatcacaagagtccttacgagcgaaagaggcaggtggcagagacagaggcagcaggtg-taaggacagaggctggagtgata-agctgctgcctggaagggagccaggagacacagaacgtgagcctcttctagaagctgggaaaagtaaggaaacagattctt--cctgggag----------AGaatgtgtgttcttttaagccgctgaatttgtactaattggccacagcagtaat-aaaaaactaatac---------------------------------------------------------aGATGATCTCACTGAGAAGGTGAAAATGgaagcctggcatgctgcagtccgtgcgtcaca-----------------------aagagtcgaacgtgaccgagcgattg---aacaACAGcgctgagaaggtgacgttgagcaaaggtttgcaggagctgag-gagcca-ggtaggcaggtatccgaggaaaaggtgttccaggaacaaaggcaa----actgtggggagagtgccctgatgagaaaagggcctctccagatgga--gaagcagagcagccccgggagtggggtgaaca-gaagaggCAGGTTACAGCCTGC------GGTGCATCTGCTCGTCTA-GCCTTTG------CTGGCCACCGTAGACACTTTGGCTTACCCTGAGTGAGACAGCG-GCGTAGGAAGAGCTAGGAATATTCACAGGAATTCTGAGCGTTTACGAGGAGAATAGAAGTGGTGTTCTGGTA---AATCATGGTA--GGTGGGGGTG-GGGAGAGTCTGGGTTTGTAGCATTTGCTgatttccacggacagaggcgcctggtgagctacagtc-----------------------------cagggggtcacaaagaggcgggcacgac--------------------------tgaaagtgactaaacacgcatgcatgcCtggtgtagacgctc
i oviAri3.chr26            I 1 I 20
s capHir1.chr27             17931615 1001 +  44118849 aattctgggagagagcaggtac-aagtcaagtaggatggacaaggaaggcACAGTA-GCAGAATAATGA-TGCCCAAACATATCCACATccttatagggtgaaaggg-ctatgcagacgggatgaagtgaaggaccatcggatggggagattagcgtgtgttatccacgtgggcccaatgtgatcacaagagtccttacgagggaaagaggcaggtggcagagacagaggcagcaggtg-taaagacagaggctggagtgata-aactgctgcctggaagggagccaggagacacagaacgtgagcctcttctagaagccgggaaaagtaaggaaacagattctt--cctgggag----------agaatgtgtgttcttttaagccactgaatttgtactaattggccacagcagtaat-aaaaaactaatac---------------------------------------------------------aGATGATCTCACTGAGAAGGtgaaaagggaagcctggcgtgctgcagtctgtgtgtcaca-----------------------aagagtcgaacatgaccgagcgactgaacaACAACAGcaatgagaaggtgacgttgagcaaaggtttgcaggaggtgag-gagcca-ggtaggcaggtatccgaggaaaaggtgttccaggaacaaaggcaa----actgcggggagagtgccctgatgagaaaagggcctctccagatgaa--gaagcagagcag-cccgggagtggggtgaacaggaagaggcaggttagagCCTGC------GGTTCATCCGCTCGTCTAGGCCTTTG------CTGGCCACTGTAGACGCTTTGGCTTACCCTGAGTGAGACAGAG-GCGTAGGAAGAGCTAGGAATATTCACAGGAATTCTGACCGTTTACGAGGAGAATAGAAGTGGTGTTCTGGTA---AATCATGGTA--GGTGGGGGTG-GGGAGAGTCTGGGTTTGTAGCATTTGCTgatttccatggacagaggcgcctggtaggctacagtc-----------------------------ca--------------------------gggggtcacaaacaggcgggcacaactgaaagtgactaaacacgcgtgcatgcCtggtgtagacactc
i capHir1.chr27            I 1 I 20
s equCab2.chr27             18745760  824 -  39960074 aatgctgagagtgagtaggtacaaagtcaaataggatggtcagggaaggtgtagcaggtagaataatggcccctcaaacatgtctgtgtccttaaatgacaaaaggggctttgcagatgtgattaagtgaaggatcacgagatagagagatgattgtgaattatccaggtgggccaaatgtaagcacaagtgtccttacaaggaaaagaggcaagaaggagagtaagaggcaggaggtg-tgaggacagaggttggaggggta-tgtttctggttggaa-------agaggccacggaatgtgagcatcctctagaagatggaaaaggtaaggaaaaggattctt--gctgagag----------agaatgtgtgttcttttaagccactgaatttgtgctaattggttacagcagtaat-aagaaactaatat---------------------------------------------------------agatgatctcactaagcagatga---------------------catt-----------------------------------------------------------------------------------------tgagcaaagacttgaagcagttgag-ggaaccagcactacagatgtgtgggggaagggtgctccttt--ttaaggcaa----acagcccagcggacgccctcagcagaagcttgc-tagtcatgtgcg-tgaagcagagagaaactgggagtggggccaatgggaggcgtcaggtcacacagtgg------ggtgggtcagctcatttagggcctta-------tggccattgtaagcactttggcttattctgagtgagat--TGAGTATAGGAGAAGCTATGAATATTTATGGGAATTCTGAACATTTACAAGAAGAATAAAAGTGGTATGCTGACAACCAACCA----ATTGTTGGGGGT--TGAGGGGGCTGTatttgtagcatttgctgatttc------------------------------------------------------------ca--------------------------------------------------------------------------------tgctgtcaataccc
i equCab2.chr27            I 1 I 20
s felCat8.chrB1             20475513  777 + 206538554 aatgctgggagtgaataggtacaaagtcaaatagaatggtcaaggaaggtcAAgtaggcagaatgatgg-ccccaaaacatggctacatccttatataacaaaaggggtgttgcagatgtgattaacttaagggtcaggagatggggagattatcatggattatctaggtgggttcagttaaatcacaa-tgtccttataagggaaagaaataggtagaagattcagaggcaggagata-tgacactagaggttggagtgaca--attgctggctagaagt--gccatgagccacggaatatgagcatcctctagaagctggaaaaggtaaagaaatggattctc--actgaaag----------AAAATGTGCATTCTTTTAAGTCACTGAATTTGTGTTAACTGGTTAGAGCATTAAT-AAGAAACAAAAAC---------------------------------------------------------AGAAAATCTCcctgagaagatga---------------------c-----------------------------------------------------------------------------------------------------------------tgag-gcag---actctgcagatgtctgggggaaggag---------------gcaa----acagcagaa-aaatgccctcaggagaatcatgtctagccatgttca-tggagcacagcaacactaggagtggggtgaacaggaggagacaggtcagagggtgg------gttaggtcagctcatttagggcctta------ctggcca----aagcacttgggcttattctgagtgagacagggagtgtagggATGGCTATGAATATTTATAGAAATTCTGAATACTTACAAGAAGAATAAAAGTGACATGCTGGTA---AACCA----A----TGGGGG---GGTGGTGGGTGgatttgtacaatttgctgactcc------------------------------------------------------------tg--------------------------------------------------------------------------------tgatgtaaatactc
i felCat8.chrB1            I 2 I 33
s canFam3.chr16             18193726  856 -  59632846 aatacttggagtgaataggtacaagttcaaataggatggtcaaggaaggtatagtaagcagaataatgg-ccctcaaacaagtctacatccttatatggcaaaaaggatgctatagatgtgattaagttaaggatcatgagatagggagattatcatggattatcaaagtgggttcaatgtgatcacaagggtccttataagggaaagaggtaggtatcagattcagagactggagata-tgacagtagaggttggagtgaca--attgctggctggaagg--accatgagccacagaatgtgagcatcctctagaagctggaaaaggtaaggaaataaattctc--accaggag----------AAAATGTGtg--------agtcac--aatttgtgctaattgaccacagcagtaat-aagaaactaaaacaGACAATGTCaaaaaaaaaataaaaaaataaataaaaataaaaaaaaaaaataaaaCAGACAATGtcactgagaagatta---------------------catt-----------------------------------------------------------------------------------------tgagc--agtctcaaaagaggtgag-ggaacc-actctgcagatatttggggcaagggt---------------gcaa----acaacagaa-aaatgcccttagcagaagcttgcatagccatgtgca-tgaagcagagcaacaataggagtagtgcgaacagaaggaggcaggtcagaggatag------gtgggatcagcttatttagggcctta------ttggccaccgtaaacactctggcctattctgagtgagatagggagTTTAAGAGGATCTGTGAATATTTATAGGAATTCTGAATGCGTACAAGAAGAATAAATGTGATATGCTGGTA---AACCA----A----TGGGGGCAAGAGGGTGTGTGgatttgtagcatttgctgatttc------------------------------------------------------------tc--------------------------------------------------------------------------------tgaagtaaatactc
i canFam3.chr16            I 204 I 20
s odoRosDiv1.KB229312         751039  778 -   2017862 aatgctgggaatgaataggtacaaagacaaataggatggtcaaggaaggTAGAgtaggcagaataatgg-ccctcaaatatgtctacatc--ggtatgacaaaagcgaattcgcaagtgtggttaagctaaggatcatgagatagagagattatcagggat--tctgggtgggttcagtgtaatcacaagggtccttataagggaaagaggtaggtagcagattcagagacaggagata-tgacagtagaggttggagtgaca-----------------------atgagccatggaatgtgagcatcctctagaagctggaaaaggtaaggaaatggattttt--accaagag----------aaaatgtgtgttcttttaagtcactgaatttttgctaattggttacagcagtaat-aagaaactaaaac-----------------------------------------------------------aTAATGtcactg---agatta---------------------catt-----------------------------------------------------------------------------------------tgagc--agacttgaaggtggtgag-ggaacc-gctctgcagatatctgggggaggggt---------------gaaa----acagcagaa-gaatgccctcagcagaagcatgcctagccatatgca-tgaaacacagcaacaacaggagtgtggtgaacaggaggaggcag---aaagggtag------gttgggtctgctcatttggggcctta------tcggccactgtaagcactttggcctattctgagtgagacagggagtttaggagggCCTATGAATATTTATAGGAATTCTGAATACTTACAATTAGAATAAAAGTGATGTCCTATTA---AACCA----A----TGGGGGCAGGAGCATAGATGGATTCGTAGCATTTGCTGATTTC------------------------------------------------------------TC--------------------------------------------------------------------------------TGATGCAAACACTC
i odoRosDiv1.KB229312      I 1 I 20
e ornAna1.Contig22913           8772    0 +      9822 I
e tetNig2.chr13              4300044  851 -  13302670 T
e punNye1.JH419232           4767720  338 +   5065651 T
e mayZeb1.JH720588           2493684  338 +   2778784 T
e hapBur1.JH425411           1657068  338 +   1983257 T
e neoBri1.JH422276           4185134  338 -  16571924 T
e araMac1.AOUJ01470298           637    0 -       895 I
e astMex1.KB882082           3904961  703 -   8876373 T
e takFla1.KE120500            511214  428 +    663757 T
e fr3.chr9                   3741472  428 -  13922460 T
e ficAlb2.chrZ              55059163    0 +  59856998 I
e anoCar2.chr2              23372733    0 + 199619895 I
e pseHum1.KB221303            460951    0 -   1055857 I
e zonAlb1.KB913240            788825    0 -    852449 I
e colLiv1.KB375452           1391464    0 +   4234233 I
e allMis1.JH737334             63284    0 -    565068 I
e falPer1.KB390921           1613136    0 +   3698665 I
e falChe1.KB398121           1475198    0 +   3546035 I
e macEug2.GL053575             11374    0 +     74274 I
e galGal4.chrZ              23195869    3 -  82363669 I
e geoFor1.JH739942           1280732    0 +   5104860 I
e melGal1.chrZ              62956231    0 +  81011772 I
e anaPla1.KB742960            141378    0 +    531124 I
e amaVit1.KB238281               354    0 +      9836 I
e apaSpi1.KB928558           3295625    0 -   3719163 I
e cheMyd1.KB497515           3641299    0 +   9092468 I
e chrPic2.chrUn_KK082917v1  12457941    0 -  13974604 I
e pelSin1.JH211373           2650239    0 -   4257854 I
e calJac3.chr3             190755530 1172 - 190850796 I
e melUnd1.JH556568           2080313    0 +   4296882 I
e monDom5.chr3             315954806  306 - 527952102 I
e taeGut2.chrZ              13217382    0 +  72861351 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=204622.000000
s hg38.chr8_KI270814v1_alt     73727 72 +    141812 caaccgatggTTTGACAAACATGTCACA-AAATTTCTGAGTATTTAATTTTCACCTC--------CATTAGAGCACTGCAC
s ponAbe2.chr8              59043297 72 + 153482349 caaccgatggTTTGACAAACATGTCACA-AAATTTCTGAGTATTTAATTTTCAGCTC--------CATTAGAGCACTGCAC
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48116985 72 + 100215132 cgaccgatggTTTGACAAACACATCACA-AAATTTCTGAGTATTTAATTTTCAGCTC--------CGTTAGAGCACTGCAC
i nomLeu3.chr16            C 0 C 0
s saiBol1.JH378165          14121105 72 -  14256875 ctactgatggTTTGACAAACACTTCACA-ACATTCCTGGGTACTTAACTATCAGCTC--------CAGCAGAGCACTGCGT
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3018288 75 -  10937097 ctaccaGgtgtttaacaaccaactcaca-aaattctcgaatatttaattatcCACCTGGGCGTGGCATCATG-CAC-G---
i orcOrc1.KB316932         I 20 C 0
s panHod1.KE114653           1505054 69 -   2937107 CTCCCAGGAGTCTAATAACCAACTCACAAAAATTCCTGAATATTTCATTATCAGCCC--------CAGCAGG-CACTG---
i panHod1.KE114653         I 20 C 0
s bosTau8.chr27             18220640 69 +  45407902 ctcccaGGAGTCTAATAACCAACTCACAAAAATTTCTGAATATTTCATTATCAGCCC--------CAGCAGG-CACTG---
i bosTau8.chr27            I 20 C 0
s oviAri3.chr26             17847162 69 +  44077779 ctcccaGGAGTCTCATAACCAACTCACAGAAATTCCTGAATGTTTCATTATCAGCCC--------CAGCAGG-CACTG---
i oviAri3.chr26            I 20 C 0
s capHir1.chr27             17932636 69 +  44118849 ctcccaGGAGTCTCATAACCAACTCACAGAAATTCCTGAATATTTCATTATCAGCCC--------CAGCAGG-CACTG---
i capHir1.chr27            I 20 C 0
s equCab2.chr27             18746604 72 -  39960074 ctaccaaGAGTTTACCAACCAACTCACA-AAATTCCTCAATATTTAATTATCAGTCC--------CAGCAGGGCATTGCAC
i equCab2.chr27            I 20 C 0
s canFam3.chr16             18194602 72 -  59632846 ctaccaaTAGTTTAACAACCAACTCATA-AAACTCCTAAATATTTAATTATCAGATA--------CAGTAGGACATTATTC
i canFam3.chr16            I 20 C 0
s odoRosDiv1.KB229312         751837 72 -   2017862 CTACCAATAGTTTAATAACCAACTCATG-AAATTCCTAAGTATTTAATTATCAGATT--------CAGTATAACATTGCTC
i odoRosDiv1.KB229312      I 20 C 0
e felCat8.chrB1             20476290 33 + 206538554 I
e ornAna1.Contig22913           8772  0 +      9822 I
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637  0 -       895 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55059163  0 +  59856998 I
e anoCar2.chr2              23372733  0 + 199619895 I
e pseHum1.KB221303            460951  0 -   1055857 I
e zonAlb1.KB913240            788825  0 -    852449 I
e colLiv1.KB375452           1391464  0 +   4234233 I
e allMis1.JH737334             63284  0 -    565068 I
e falPer1.KB390921           1613136  0 +   3698665 I
e falChe1.KB398121           1475198  0 +   3546035 I
e macEug2.GL053575             11374  0 +     74274 I
e galGal4.chrZ              23195869  3 -  82363669 I
e geoFor1.JH739942           1280732  0 +   5104860 I
e melGal1.chrZ              62956231  0 +  81011772 I
e anaPla1.KB742960            141378  0 +    531124 I
e amaVit1.KB238281               354  0 +      9836 I
e apaSpi1.KB928558           3295625  0 -   3719163 I
e cheMyd1.KB497515           3641299  0 +   9092468 I
e chrPic2.chrUn_KK082917v1  12457941  0 -  13974604 I
e pelSin1.JH211373           2650239  0 -   4257854 I
e calJac3.chr3             190755530 1172 - 190850796 I
e melUnd1.JH556568           2080313  0 +   4296882 I
e monDom5.chr3             315954806 306 - 527952102 I
e taeGut2.chrZ              13217382  0 +  72861351 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=76333.000000
s hg38.chr8_KI270814v1_alt     73799 28 +    141812 ATATGACATTCCATTTGTCAATTCCATC-----
s ponAbe2.chr8              59043369 28 + 153482349 GTATGACATCCCATTTGTCAATTCCATC-----
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48117057 28 + 100215132 TTATGACATCCCATTTGTCAATTCCATC-----
i nomLeu3.chr16            C 0 C 0
s saiBol1.JH378165          14121177 28 -  14256875 GTATGACATCCCATTTGCCAATTCCACA-----
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3018363 24 -  10937097 ---TGAT-CCCCACTTGACAGTCCCACA-----
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1505123 24 -   2937107 ---GGAT-CTCCATTTGCCAGTTCCACA-----
i panHod1.KE114653         C 0 C 0
s bosTau8.chr27             18220709 24 +  45407902 ---TGAT-CTCCATTTGCCAGTTCCACA-----
i bosTau8.chr27            C 0 C 0
s oviAri3.chr26             17847231 24 +  44077779 ---TGAT-CTCCATTTGCCAGTTCCACA-----
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17932705 24 +  44118849 ---TGAT-CTCCATTCGCCAGTTCCACA-----
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18746676 27 -  39960074 ATATGAT-CCCTATTTGCCAATTCCACA-----
i equCab2.chr27            C 0 C 0
s canFam3.chr16             18194674 26 -  59632846 ATCTGA--CTCCATTTGACAATTCCACA-----
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         751909 27 -   2017862 ATATGAT-CCCCACTTGTCAATTCCACA-----
i odoRosDiv1.KB229312      C 0 C 0
s anoCar2.chrUn_GL344195       35666 28 +     59083 -----ATATTACAATTGATATATGTGTTGAAAC
i anoCar2.chrUn_GL344195   T 8752 C 0
e felCat8.chrB1             20476290 33 + 206538554 I
e ornAna1.Contig22913           8772  0 +      9822 I
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637  0 -       895 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55059163  0 +  59856998 I
e pseHum1.KB221303            460951  0 -   1055857 I
e zonAlb1.KB913240            788825  0 -    852449 I
e colLiv1.KB375452           1391464  0 +   4234233 I
e allMis1.JH737334             63284  0 -    565068 I
e falPer1.KB390921           1613136  0 +   3698665 I
e falChe1.KB398121           1475198  0 +   3546035 I
e macEug2.GL053575             11374  0 +     74274 I
e galGal4.chrZ              23195869  3 -  82363669 I
e geoFor1.JH739942           1280732  0 +   5104860 I
e melGal1.chrZ              62956231  0 +  81011772 I
e anaPla1.KB742960            141378  0 +    531124 I
e amaVit1.KB238281               354  0 +      9836 I
e apaSpi1.KB928558           3295625  0 -   3719163 I
e cheMyd1.KB497515           3641299  0 +   9092468 I
e chrPic2.chrUn_KK082917v1  12457941  0 -  13974604 I
e pelSin1.JH211373           2650239  0 -   4257854 I
e calJac3.chr3             190755530 1172 - 190850796 I
e melUnd1.JH556568           2080313  0 +   4296882 I
e monDom5.chr3             315954806 306 - 527952102 I
e taeGut2.chrZ              13217382  0 +  72861351 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=99388.000000
s hg38.chr8_KI270814v1_alt     73827 32 +    141812 -----CTGTATTCCATTTG--GGCCAAGAAGTATCGGAG
s ponAbe2.chr8              59043397 32 + 153482349 -----CTGTATTCCATTTG--GGCCAAGAAGTATCAGAG
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48117085 32 + 100215132 -----CTGTATTCCATTTG--GGCCAAGAAGTATCAGAG
i nomLeu3.chr16            C 0 C 0
s saiBol1.JH378165          14121205 32 -  14256875 -----CTAGATTCTATTGG--GGACAAATGGTTTCAGAG
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3018387 32 -  10937097 -----TTACCTGCCACTTG--GACCAAGCAGTTTATGAG
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1505147 32 -   2937107 -----CTATATTCCATTTG--GAGCAAGTGGGTTAACAG
i panHod1.KE114653         C 0 C 0
s bosTau8.chr27             18220733 32 +  45407902 -----CTATATTCCATTTG--GAGCAAGTGGGTTAACAG
i bosTau8.chr27            C 0 C 0
s oviAri3.chr26             17847255 32 +  44077779 -----CTATATTCCATTTG--GAGCAAGTGGGTTAACAG
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17932729 32 +  44118849 -----CTATATTCCATTTG--GAGCAAGTGGGTTAACAG
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18746703 32 -  39960074 -----CTGTATTCCATTCA--GGCCAAGCAGTTTAGAAG
i equCab2.chr27            C 0 C 0
s canFam3.chr16             18194700 32 -  59632846 -----CTATATTCCATTGG--GGCCAAACAATTCAGGAG
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         751936 32 -   2017862 -----CTATATTCCATCTG--GGCCAAGCAATTTAGGAG
i odoRosDiv1.KB229312      C 0 C 0
s monDom5.chr3             315955112 30 - 527952102 -----CTGTCATCTGTTTGCTGATC---TGGATTGGGA-
i monDom5.chr3             I 306 I 1
s anoCar2.chrUn_GL344195       35694 35 +     59083 ATGGACGATA--CCATTTC--CTCCACTAAATATCAGAG
i anoCar2.chrUn_GL344195   C 0 C 0
e felCat8.chrB1             20476290 33 + 206538554 I
e ornAna1.Contig22913           8772  0 +      9822 I
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637  0 -       895 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55059163  0 +  59856998 I
e pseHum1.KB221303            460951  0 -   1055857 I
e zonAlb1.KB913240            788825  0 -    852449 I
e colLiv1.KB375452           1391464  0 +   4234233 I
e allMis1.JH737334             63284  0 -    565068 I
e falPer1.KB390921           1613136  0 +   3698665 I
e falChe1.KB398121           1475198  0 +   3546035 I
e macEug2.GL053575             11374  0 +     74274 I
e galGal4.chrZ              23195869  3 -  82363669 I
e geoFor1.JH739942           1280732  0 +   5104860 I
e melGal1.chrZ              62956231  0 +  81011772 I
e anaPla1.KB742960            141378  0 +    531124 I
e amaVit1.KB238281               354  0 +      9836 I
e apaSpi1.KB928558           3295625  0 -   3719163 I
e cheMyd1.KB497515           3641299  0 +   9092468 I
e chrPic2.chrUn_KK082917v1  12457941  0 -  13974604 I
e pelSin1.JH211373           2650239  0 -   4257854 I
e calJac3.chr3             190755530 1172 - 190850796 I
e melUnd1.JH556568           2080313  0 +   4296882 I
e taeGut2.chrZ              13217382  0 +  72861351 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=202325.000000
s hg38.chr8_KI270814v1_alt     73859 44 +    141812 TCAACTAG-TGACAAAA-----ATAAGAAAGTCCTCAATA------AAAACCAGTG
s ponAbe2.chr8              59043429 44 + 153482349 TCAACTAG-TGACAAAA-----ATAAGAAAGTCCTCAATA------AAAACCAGTG
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48117117 44 + 100215132 TCAACTAG-TGACAAAA-----ATAAGAAAGTCCTCAATA------AAAACCAGTG
i nomLeu3.chr16            C 0 C 0
s saiBol1.JH378165          14121237 44 -  14256875 TCAACTAG-TGGCAAAA-----GTAAGAAAGTCTTCAATA------AAAATCAGTG
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3018419 47 -  10937097 TCACCTGG-TGGCAAAAT--ATATAAGAAAGGCCTCAATA------AGAATCAGTG
i orcOrc1.KB316932         C 0 I 12425
s panHod1.KE114653           1505179 47 -   2937107 TCAGCTGG-TGGCAAAAC--ATATAAGAAAGCCCTCAATA------AAAATCAGTC
i panHod1.KE114653         C 0 I 8
s bosTau8.chr27             18220765 47 +  45407902 TCAGCTGG-TGGCAAAAC--ATATAAGAAAGCCCTCAATA------AAAATCAGTC
i bosTau8.chr27            C 0 I 8
s oviAri3.chr26             17847287 47 +  44077779 TTAGCTGG-TGGCAAAAC--ATATAAGAAAGCCCTCAATA------AAAATCAGTC
i oviAri3.chr26            C 0 I 8
s capHir1.chr27             17932761 46 +  44118849 TCAGCTGG-TGGCAAAAC--ATAT-AGAAAGCCCTCAATA------AAAATCAGTC
i capHir1.chr27            C 0 I 8
s equCab2.chr27             18746735 47 -  39960074 CCAACTAG-TGGCAAAAT--ATATAAGAAAGGCCTCAATA------AAAATCAATG
i equCab2.chr27            C 0 I 8
s felCat8.chrB1             20476323 47 + 206538554 TCAACTAG-TAATCAAAT--ATATAAGAAAGGATTCAATA------AAAATCAGTG
i felCat8.chrB1            I 33 I 8
s canFam3.chr16             18194732 47 -  59632846 TCAACCAG-TGGCAAAAT--GTATAAGAAAGGACTCAATA------AAAATCAGTG
i canFam3.chr16            C 0 I 8
s odoRosDiv1.KB229312         751968 46 -   2017862 -CAACTGG-TGACAAAAT--ATATAAGAAAGGACTCAATA------AAAATCAGCA
i odoRosDiv1.KB229312      C 0 I 8
s monDom5.chr3             315955143 45 - 527952102 CGATCTAGAAAACAAAA-----AAAAGGAACTTTTAAATT------ATTTTGAAAG
i monDom5.chr3             I 1 C 0
s anoCar2.chrUn_GL344195       35729 49 +     59083 TCATATAG----CAATGTTCTTTTAAGAGA---CTAAATATCACGGGAGAACAGAA
i anoCar2.chrUn_GL344195   C 0 C 0
e ornAna1.Contig22913           8772  0 +      9822 I
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637  0 -       895 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55059163  0 +  59856998 I
e pseHum1.KB221303            460951  0 -   1055857 I
e zonAlb1.KB913240            788825  0 -    852449 I
e colLiv1.KB375452           1391464  0 +   4234233 I
e allMis1.JH737334             63284  0 -    565068 I
e falPer1.KB390921           1613136  0 +   3698665 I
e falChe1.KB398121           1475198  0 +   3546035 I
e macEug2.GL053575             11374  0 +     74274 I
e galGal4.chrZ              23195869  3 -  82363669 I
e geoFor1.JH739942           1280732  0 +   5104860 I
e melGal1.chrZ              62956231  0 +  81011772 I
e anaPla1.KB742960            141378  0 +    531124 I
e amaVit1.KB238281               354  0 +      9836 I
e apaSpi1.KB928558           3295625  0 -   3719163 I
e cheMyd1.KB497515           3641299  0 +   9092468 I
e chrPic2.chrUn_KK082917v1  12457941  0 -  13974604 I
e pelSin1.JH211373           2650239  0 -   4257854 I
e calJac3.chr3             190755530 1172 - 190850796 I
e melUnd1.JH556568           2080313  0 +   4296882 I
e taeGut2.chrZ              13217382  0 +  72861351 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=90629.000000
s hg38.chr8_KI270814v1_alt     73903 33 +    141812 ----TCTACATTTGACTGATGTAAGGATCTGAAAT-TC
s ponAbe2.chr8              59043473 33 + 153482349 ----TCTACATTTGACTGATGTAAGGATCTGAAAT-TC
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48117161 33 + 100215132 ----TCTACATTTGACTGATGTAAGGATCTGAAAT-TC
i nomLeu3.chr16            C 0 C 0
s saiBol1.JH378165          14121281 33 -  14256875 ----TTTACATTTGACAGATGTGATATTCTGGAAC-TT
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3030891 34 -  10937097 ----CCCAAGTTTGACAAATGCAAGATTTTGGAATCTA
i orcOrc1.KB316932         I 12425 C 0
s panHod1.KE114653           1505234 34 -   2937107 ----CCCAAGTTTAATAGATTTGGGATTCTGGAATCTA
i panHod1.KE114653         I 8 C 0
s bosTau8.chr27             18220820 34 +  45407902 ----CCCGAGTTTAATAGATTTGGGATTCTGGAATCTA
i bosTau8.chr27            I 8 C 0
s oviAri3.chr26             17847342 34 +  44077779 ----CCCACGTTTAATAGATTTGGGATTCTGGAATCTA
i oviAri3.chr26            I 8 C 0
s capHir1.chr27             17932815 34 +  44118849 ----CCCACGTTTAATAGATTTGGGATTCTGGAATCTA
i capHir1.chr27            I 8 C 0
s equCab2.chr27             18746790 34 -  39960074 ----CCTGATTTTGACAGATGCAAGATTATGGAAACTA
i equCab2.chr27            I 8 C 0
s felCat8.chrB1             20476378 34 + 206538554 ----TCTGAGTTTGACAGATGCCAGATTCTAGACTCTA
i felCat8.chrB1            I 8 C 0
s canFam3.chr16             18194787 34 -  59632846 ----CCTGAGTTTGACAGATGCCAGATTTTAAAATCTA
i canFam3.chr16            I 8 C 0
s odoRosDiv1.KB229312         752022 34 -   2017862 ----CCTGAGTTTGACAGATGCCAGATTCTAGAATCTA
i odoRosDiv1.KB229312      I 8 C 0
s monDom5.chr3             315955188 33 - 527952102 ----TATTTTTTTCAATGGTGAAAAGGTTTGGAATTC-
i monDom5.chr3             C 0 n 0
s anoCar2.chrUn_GL344195       35778 30 +     59083 AAGACCTA----TAATGCCTATAATG-TCTGTACC---
i anoCar2.chrUn_GL344195   C 0 C 0
e ornAna1.Contig22913           8772  0 +      9822 I
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637  0 -       895 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55059163  0 +  59856998 I
e pseHum1.KB221303            460951  0 -   1055857 I
e zonAlb1.KB913240            788825  0 -    852449 I
e colLiv1.KB375452           1391464  0 +   4234233 I
e allMis1.JH737334             63284  0 -    565068 I
e falPer1.KB390921           1613136  0 +   3698665 I
e falChe1.KB398121           1475198  0 +   3546035 I
e macEug2.GL053575             11374  0 +     74274 I
e galGal4.chrZ              23195869  3 -  82363669 I
e geoFor1.JH739942           1280732  0 +   5104860 I
e melGal1.chrZ              62956231  0 +  81011772 I
e anaPla1.KB742960            141378  0 +    531124 I
e amaVit1.KB238281               354  0 +      9836 I
e apaSpi1.KB928558           3295625  0 -   3719163 I
e cheMyd1.KB497515           3641299  0 +   9092468 I
e chrPic2.chrUn_KK082917v1  12457941  0 -  13974604 I
e pelSin1.JH211373           2650239  0 -   4257854 I
e calJac3.chr3             190755530 1172 - 190850796 I
e melUnd1.JH556568           2080313  0 +   4296882 I
e taeGut2.chrZ              13217382  0 +  72861351 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=66269.000000
s hg38.chr8_KI270814v1_alt     73936  26 +    141812 ATTTTTCTTTATCTGCTTT------------------------------------------------------------------------------------------------------GCCTGGT
s ponAbe2.chr8              59043506  26 + 153482349 ATTTTTCTTTATCTGCTTT------------------------------------------------------------------------------------------------------GCCTGGT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48117194  26 + 100215132 ATTTTTCTTTATCTGCTTA------------------------------------------------------------------------------------------------------GCCTGGT
i nomLeu3.chr16            C 0 C 0
s saiBol1.JH378165          14121314  26 -  14256875 ACTTCTCTTTACCTGCTCT------------------------------------------------------------------------------------------------------GCCTGGT
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3030925  26 -  10937097 ATTTCTCTTTACCTGCTCT------------------------------------------------------------------------------------------------------GCCTCAT
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1505268  28 -   2937107 ATTTCTCTTTACCTGCTCTGCTgctgct----------------------------------------------------------------------------------------------------
i panHod1.KE114653         C 0 I 99
s bosTau8.chr27             18220854  26 +  45407902 ATTTCTCTTTACCTGCTCT------------------------------------------------------------------------------------------------------ACCTTGT
i bosTau8.chr27            C 0 I 563
s oviAri3.chr26             17847376 128 +  44077779 ATTTCTCTTTGCCTGGTCTGCTgctgctgctgctaagttgcttcagtcgtgtctgactctgtgcaaccccatagacggcagcccaccaggctcccccgtccctgggattctccagacaagaacCTTGT
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17932849  26 +  44118849 ATTTCTCTTCACCTGCTCT------------------------------------------------------------------------------------------------------ACCTTGT
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18746824  26 -  39960074 ATTTCTCTTTACCTGCTCT------------------------------------------------------------------------------------------------------GCCTGGT
i equCab2.chr27            C 0 C 0
s felCat8.chrB1             20476412  26 + 206538554 ATTTTGCCTTACTTGCTCT------------------------------------------------------------------------------------------------------GCCCAGT
i felCat8.chrB1            C 0 C 0
s canFam3.chr16             18194821  26 -  59632846 ATTTTTCCTTATCTGCTCT------------------------------------------------------------------------------------------------------GCCTGGT
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         752056  26 -   2017862 ATTTCTCCTCATCTTCTCT------------------------------------------------------------------------------------------------------ACTTGGT
i odoRosDiv1.KB229312      C 0 C 0
s anoCar2.chrUn_GL344195       35808  22 +     59083 ATTCTGTGTCATAAAATCT------------------------------------------------------------------------------------------------------GAT----
i anoCar2.chrUn_GL344195   C 0 C 0
e ornAna1.Contig22913           8772   0 +      9822 I
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637   0 -       895 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55059163   0 +  59856998 I
e pseHum1.KB221303            460951   0 -   1055857 I
e zonAlb1.KB913240            788825   0 -    852449 I
e colLiv1.KB375452           1391464   0 +   4234233 I
e allMis1.JH737334             63284   0 -    565068 I
e falPer1.KB390921           1613136   0 +   3698665 I
e falChe1.KB398121           1475198   0 +   3546035 I
e macEug2.GL053575             11374   0 +     74274 I
e galGal4.chrZ              23195869   3 -  82363669 I
e geoFor1.JH739942           1280732   0 +   5104860 I
e melGal1.chrZ              62956231   0 +  81011772 I
e anaPla1.KB742960            141378   0 +    531124 I
e amaVit1.KB238281               354   0 +      9836 I
e apaSpi1.KB928558           3295625   0 -   3719163 I
e cheMyd1.KB497515           3641299   0 +   9092468 I
e chrPic2.chrUn_KK082917v1  12457941   0 -  13974604 I
e pelSin1.JH211373           2650239   0 -   4257854 I
e calJac3.chr3             190755530 1172 - 190850796 I
e melUnd1.JH556568           2080313   0 +   4296882 I
e monDom5.chr3             315955221   0 - 527952102 I
e taeGut2.chrZ              13217382   0 +  72861351 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=13540.000000
s hg38.chr8_KI270814v1_alt     73962 3 +    141812 GAT
s ponAbe2.chr8              59043532 3 + 153482349 GAT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48117220 3 + 100215132 GAT
i nomLeu3.chr16            C 0 C 0
s saiBol1.JH378165          14121340 3 -  14256875 GAT
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3030951 2 -  10937097 -AT
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1505395 3 -   2937107 TAT
i panHod1.KE114653         I 99 C 0
s oviAri3.chr26             17847504 2 +  44077779 -AT
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17932875 2 +  44118849 -AT
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18746850 3 -  39960074 GAT
i equCab2.chr27            C 0 C 0
s felCat8.chrB1             20476438 3 + 206538554 GAT
i felCat8.chrB1            C 0 C 0
s canFam3.chr16             18194847 3 -  59632846 GAT
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         752082 3 -   2017862 GAT
i odoRosDiv1.KB229312      C 0 C 0
s anoCar2.chrUn_GL344195       35830 2 +     59083 -AC
i anoCar2.chrUn_GL344195   C 0 C 0
e bosTau8.chr27             18220880 563 +  45407902 I
e ornAna1.Contig22913           8772 0 +      9822 I
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637 0 -       895 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55059163 0 +  59856998 I
e pseHum1.KB221303            460951 0 -   1055857 I
e zonAlb1.KB913240            788825 0 -    852449 I
e colLiv1.KB375452           1391464 0 +   4234233 I
e allMis1.JH737334             63284 0 -    565068 I
e falPer1.KB390921           1613136 0 +   3698665 I
e falChe1.KB398121           1475198 0 +   3546035 I
e macEug2.GL053575             11374 0 +     74274 I
e galGal4.chrZ              23195869 3 -  82363669 I
e geoFor1.JH739942           1280732 0 +   5104860 I
e melGal1.chrZ              62956231 0 +  81011772 I
e anaPla1.KB742960            141378 0 +    531124 I
e amaVit1.KB238281               354 0 +      9836 I
e apaSpi1.KB928558           3295625 0 -   3719163 I
e cheMyd1.KB497515           3641299 0 +   9092468 I
e chrPic2.chrUn_KK082917v1  12457941 0 -  13974604 I
e pelSin1.JH211373           2650239 0 -   4257854 I
e calJac3.chr3             190755530 1172 - 190850796 I
e melUnd1.JH556568           2080313 0 +   4296882 I
e monDom5.chr3             315955221 0 - 527952102 I
e taeGut2.chrZ              13217382 0 +  72861351 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=248921.000000
s hg38.chr8_KI270814v1_alt     73965 76 +    141812 TAAATTATGAT-TTTAGAAGAAACATTTT-----TAATTCCTTATC-----------AGAGTGTTAC-TACTGAATAA--ATACAAGACATAG-TTT
s ponAbe2.chr8              59043535 76 + 153482349 TAAATTATGAT-TTTAGAAGAAACATTTT-----TAATTCCTTATC-----------AGAGTGTTAC-TACTGAATAA--ATATAAGATATAG-TTT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48117223 76 + 100215132 TAAATTATGAT-TTTAGAAGAAACATTTT-----TAATTCCTTATC-----------AGAGTGTTAC-TACTGAATAA--ATACAAGACATAG-TTT
i nomLeu3.chr16            C 0 C 0
s saiBol1.JH378165          14121343 76 -  14256875 TAAACTGTGAT-TTTAAAAGAAACATGTT-----TAACTCCTGACC-----------AGAATGCTGC-CACCAAATAA--ATAAAATACATAC-ttt
i saiBol1.JH378165         C 0 I 758
s orcOrc1.KB316932           3030953 75 -  10937097 TAAACGATGAG-TTAAAAAGAAGCACTCT-----TACTTTCTTATC-----------AGAATGTTGC-CATTAAACAA--ACAGAAGACATAC-TG-
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1505398 76 -   2937107 TAAAGGATGAGTTAAAAAAGAGGCACTCT-----TTCATTCATATC-----------AGAATGTTCC-AATTAAATAA--ATGGAAGATATAT-TG-
i panHod1.KE114653         C 0 C 0
s bosTau8.chr27             18221443 75 +  45407902 tAAAGGATGAG-TTAAAAAGAAGCACTCT-----TTCTTTCTTATC-----------AGAATGTTTC-TATTAAATAA--ATGGAAGATATAT-TG-
i bosTau8.chr27            I 563 C 0
s oviAri3.chr26             17847506 75 +  44077779 TAAAGGATGAG-TTAAAAAGAAGCACTCT-----TTCATTCATATC-----------AGAATGTTCC-AATTAAATAA--ATGGAAGATATAT-TG-
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17932877 76 +  44118849 TAAAGGATGAGTTTAAAAAGAAGCACTCT-----TTCATTCGTATC-----------AGAATGTTCC-AATTAAATAA--ATGGAAGATATAT-TG-
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18746853 78 -  39960074 TAAATGATGAT-TTAAAAAGAGGCACTTT-----GACTGCCTTGGG-----------AGAGTGTTCC-AACCAAATAAATATAGAAGACATACTTT-
i equCab2.chr27            C 0 C 0
s felCat8.chrB1             20476441 76 + 206538554 TAAATGATGAT-TTAAAAAGAAGCACTTG-----TACTCCCTTATC-----------AGAACATTGC-CACCAAATAA--ATAGGAGACATACTTT-
i felCat8.chrB1            C 0 C 0
s canFam3.chr16             18194850 70 -  59632846 TAAATGATGTT-TTAAAAAGAAGCACTTC-----TACTCCTGCATC-----------AGAATGTTGC-CACC----AA--AAAGAAGACAAAC--T-
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         752085 76 -   2017862 TAAATGTTGAT-TTAAAAAGAAGCACTTC-----TACTCCCATATC-----------AGAATGATGC-CACCAAATAA--ATAGAAGACAAACTTT-
i odoRosDiv1.KB229312      C 0 C 0
s anoCar2.chrUn_GL344195       35832 83 +     59083 TAGagaatact-tttaaaagaaatgttttaaaaatatgagcATATCTTGGAGTAGTAAAAATGTCCCACATCAAACCA--GTGTCA-----------
i anoCar2.chrUn_GL344195   C 0 C 0
e ornAna1.Contig22913           8772  0 +      9822 I
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637  0 -       895 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55059163  0 +  59856998 I
e pseHum1.KB221303            460951  0 -   1055857 I
e zonAlb1.KB913240            788825  0 -    852449 I
e colLiv1.KB375452           1391464  0 +   4234233 I
e allMis1.JH737334             63284  0 -    565068 I
e falPer1.KB390921           1613136  0 +   3698665 I
e falChe1.KB398121           1475198  0 +   3546035 I
e macEug2.GL053575             11374  0 +     74274 I
e galGal4.chrZ              23195869  3 -  82363669 I
e geoFor1.JH739942           1280732  0 +   5104860 I
e melGal1.chrZ              62956231  0 +  81011772 I
e anaPla1.KB742960            141378  0 +    531124 I
e amaVit1.KB238281               354  0 +      9836 I
e apaSpi1.KB928558           3295625  0 -   3719163 I
e cheMyd1.KB497515           3641299  0 +   9092468 I
e chrPic2.chrUn_KK082917v1  12457941  0 -  13974604 I
e pelSin1.JH211373           2650239  0 -   4257854 I
e calJac3.chr3             190755530 1172 - 190850796 I
e melUnd1.JH556568           2080313  0 +   4296882 I
e monDom5.chr3             315955221  0 - 527952102 I
e taeGut2.chrZ              13217382  0 +  72861351 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=95084.000000
s hg38.chr8_KI270814v1_alt     74041 25 +    141812 AACTATATGTAATCTTGTCTATAT----A
s ponAbe2.chr8              59043611 24 + 153482349 AACTATATGTAATCTTGTCAATAT-----
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48117299 29 + 100215132 AACTATATGTAATCTTGTCTATATTTTAT
i nomLeu3.chr16            C 0 C 0
s orcOrc1.KB316932           3031028 25 -  10937097 AACTATATTCAGTCTTGCCTATTTT----
i orcOrc1.KB316932         C 0 I 2
s panHod1.KE114653           1505474 25 -   2937107 AACTATATTCAGTCTTGCCTATTTT----
i panHod1.KE114653         C 0 I 4
s bosTau8.chr27             18221518 25 +  45407902 AACTATATTCAGTCTTGCCTATTTT----
i bosTau8.chr27            C 0 I 4
s oviAri3.chr26             17847581 25 +  44077779 AACTATATTCAGTCTTGCCTATTTT----
i oviAri3.chr26            C 0 I 4
s capHir1.chr27             17932953 25 +  44118849 AACTATATTCAGTCTTGCCTATTTT----
i capHir1.chr27            C 0 I 4
s equCab2.chr27             18746931 25 -  39960074 AACAATATTCCATCTTGTCTATTTT----
i equCab2.chr27            C 0 I 4
s felCat8.chrB1             20476517 25 + 206538554 AACTAAATACAGTCTTGTCTATTTT----
i felCat8.chrB1            C 0 I 4
s canFam3.chr16             18194920 25 -  59632846 AACTATATTCAGTCTTGTCTATCTT----
i canFam3.chr16            C 0 I 4
s odoRosDiv1.KB229312         752161 25 -   2017862 AACTATATTCAGTCTTGTCTATTTT----
i odoRosDiv1.KB229312      C 0 I 4
s anoCar2.chrUn_GL344195       35915 25 +     59083 GATGATGCTTGGTTTGTTTTaaaca----
i anoCar2.chrUn_GL344195   C 0 C 0
e ornAna1.Contig22913           8772  0 +      9822 I
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637  0 -       895 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55059163  0 +  59856998 I
e pseHum1.KB221303            460951  0 -   1055857 I
e zonAlb1.KB913240            788825  0 -    852449 I
e colLiv1.KB375452           1391464  0 +   4234233 I
e allMis1.JH737334             63284  0 -    565068 I
e falPer1.KB390921           1613136  0 +   3698665 I
e falChe1.KB398121           1475198  0 +   3546035 I
e macEug2.GL053575             11374  0 +     74274 I
e galGal4.chrZ              23195869  3 -  82363669 I
e geoFor1.JH739942           1280732  0 +   5104860 I
e melGal1.chrZ              62956231  0 +  81011772 I
e anaPla1.KB742960            141378  0 +    531124 I
e amaVit1.KB238281               354  0 +      9836 I
e apaSpi1.KB928558           3295625  0 -   3719163 I
e cheMyd1.KB497515           3641299  0 +   9092468 I
e chrPic2.chrUn_KK082917v1  12457941  0 -  13974604 I
e pelSin1.JH211373           2650239  0 -   4257854 I
e calJac3.chr3             190755530 1172 - 190850796 I
e melUnd1.JH556568           2080313  0 +   4296882 I
e monDom5.chr3             315955221  0 - 527952102 I
e taeGut2.chrZ              13217382  0 +  72861351 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e saiBol1.JH378165          14121419 758 -  14256875 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=192767.000000
s hg38.chr8_KI270814v1_alt     74066 48 +    141812 TATTTTCAACAGAAACATTAT----AGATG-------------CCAGATTCACAAA----AGAAGATAT
s ponAbe2.chr8              59043635 48 + 153482349 TATTTTCAACAGAAATGTTAT----AGATG-------------CCAGATTCACAAA----AGAAGATAT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48117328 48 + 100215132 TATTTTCAACTGAAATATTAT----AGATG-------------CCAGATTCACAAA----AGAAGATAT
i nomLeu3.chr16            C 0 C 0
s saiBol1.JH378165          14122177 52 -  14256875 TGTTCTCAACAGAAACATCATCAGAGAAGA-------------CCAGCTTCATGAA----AGGAGATAT
i saiBol1.JH378165         I 758 C 0
s orcOrc1.KB316932           3031055 41 -  10937097 --------ACAGAAACAGTATC---AGAGG-------------CCAGCTTCATAAA----AGGAGCTAT
i orcOrc1.KB316932         I 2 C 0
s panHod1.KE114653           1505503 49 -   2937107 TATCCTTGACAGAAACATTATC---AGAAA-------------CCAGCTTCATAAA----AAGAGCTAT
i panHod1.KE114653         I 4 I 176
s bosTau8.chr27             18221547 49 +  45407902 TATCCTTAACAGAAACATCATC---AAAGA-------------CCAGCTTCATAAA----AAGAGCTAT
i bosTau8.chr27            I 4 I 112
s oviAri3.chr26             17847610 49 +  44077779 TATCCTTGACAGAAACATTATC---AGAGA-------------CCAGTTTCATAAA----AAGAGCTAT
i oviAri3.chr26            I 4 C 0
s capHir1.chr27             17932982 49 +  44118849 TATCCTTGACAGAAACATTATC---AGAGA-------------CCAGCTTCATAAA----AACAGCTAT
i capHir1.chr27            I 4 C 0
s equCab2.chr27             18746960 49 -  39960074 CGTTCTCAACAGAAACATTATC---AGAAA-------------CCAGCTTCATGAA----AGGAGATAG
i equCab2.chr27            I 4 C 0
s felCat8.chrB1             20476546 49 + 206538554 TATGCTCAACAGAAACATTATC---TGAGA-------------CTAGCTGCATGAA----AGGAGAGAG
i felCat8.chrB1            I 4 C 0
s canFam3.chr16             18194949 49 -  59632846 TATGTTCAGCAGAAACATTATC---AAAAA-------------CAAGTTTCATGAA----AGGAGATAT
i canFam3.chr16            I 4 C 0
s odoRosDiv1.KB229312         752190 46 -   2017862 TATGTTCAACAGAAAC---ATC---AGAGA-------------CTAGCTTCATGAA----AGGAGATAT
i odoRosDiv1.KB229312      I 4 C 0
s anoCar2.chrUn_GL344195       35940 61 +     59083 -----cagacaaagacacacac---atatatatgtatatatctccCAGTACATGAACATTGGCTGATAC
i anoCar2.chrUn_GL344195   C 0 C 0
e ornAna1.Contig22913           8772  0 +      9822 I
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637  0 -       895 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55059163  0 +  59856998 I
e pseHum1.KB221303            460951  0 -   1055857 I
e zonAlb1.KB913240            788825  0 -    852449 I
e colLiv1.KB375452           1391464  0 +   4234233 I
e allMis1.JH737334             63284  0 -    565068 I
e falPer1.KB390921           1613136  0 +   3698665 I
e falChe1.KB398121           1475198  0 +   3546035 I
e macEug2.GL053575             11374  0 +     74274 I
e galGal4.chrZ              23195869  3 -  82363669 I
e geoFor1.JH739942           1280732  0 +   5104860 I
e melGal1.chrZ              62956231  0 +  81011772 I
e anaPla1.KB742960            141378  0 +    531124 I
e amaVit1.KB238281               354  0 +      9836 I
e apaSpi1.KB928558           3295625  0 -   3719163 I
e cheMyd1.KB497515           3641299  0 +   9092468 I
e chrPic2.chrUn_KK082917v1  12457941  0 -  13974604 I
e pelSin1.JH211373           2650239  0 -   4257854 I
e calJac3.chr3             190755530 1172 - 190850796 I
e melUnd1.JH556568           2080313  0 +   4296882 I
e monDom5.chr3             315955221  0 - 527952102 I
e taeGut2.chrZ              13217382  0 +  72861351 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=-30433.000000
s hg38.chr8_KI270814v1_alt     74114 12 +    141812 -ATGATAGAAGCT--------------------
s ponAbe2.chr8              59043683 12 + 153482349 -ATGATAGAAGCT--------------------
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48117376 12 + 100215132 -ATGATAGAAGCT--------------------
i nomLeu3.chr16            C 0 C 0
s saiBol1.JH378165          14122229 12 -  14256875 -GTGATAGAAGCT--------------------
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3031096  1 -  10937097 ------------T--------------------
i orcOrc1.KB316932         C 0 I 9
s bosTau8.chr27             18221708  9 +  45407902 ----atgtccatt--------------------
i bosTau8.chr27            I 112 I 31
s oviAri3.chr26             17847659  1 +  44077779 ------------T--------------------
i oviAri3.chr26            C 0 I 5
s capHir1.chr27             17933031  1 +  44118849 ------------T--------------------
i capHir1.chr27            C 0 I 5
s equCab2.chr27             18747009  1 -  39960074 ------------T--------------------
i equCab2.chr27            C 0 I 4
s felCat8.chrB1             20476595  1 + 206538554 ------------T--------------------
i felCat8.chrB1            C 0 I 4
s canFam3.chr16             18194998  1 -  59632846 ------------T--------------------
i canFam3.chr16            C 0 I 5
s odoRosDiv1.KB229312         752236  1 -   2017862 ------------T--------------------
i odoRosDiv1.KB229312      C 0 I 4
s anoCar2.chrUn_GL344195       36001 33 +     59083 AGTGAAGTCCCCTCCCACCCTGGAAAAGGAATA
i anoCar2.chrUn_GL344195   C 0 C 0
e panHod1.KE114653           1505552 176 -   2937107 I
e ornAna1.Contig22913           8772  0 +      9822 I
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637  0 -       895 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55059163  0 +  59856998 I
e pseHum1.KB221303            460951  0 -   1055857 I
e zonAlb1.KB913240            788825  0 -    852449 I
e colLiv1.KB375452           1391464  0 +   4234233 I
e allMis1.JH737334             63284  0 -    565068 I
e falPer1.KB390921           1613136  0 +   3698665 I
e falChe1.KB398121           1475198  0 +   3546035 I
e macEug2.GL053575             11374  0 +     74274 I
e galGal4.chrZ              23195869  3 -  82363669 I
e geoFor1.JH739942           1280732  0 +   5104860 I
e melGal1.chrZ              62956231  0 +  81011772 I
e anaPla1.KB742960            141378  0 +    531124 I
e amaVit1.KB238281               354  0 +      9836 I
e apaSpi1.KB928558           3295625  0 -   3719163 I
e cheMyd1.KB497515           3641299  0 +   9092468 I
e chrPic2.chrUn_KK082917v1  12457941  0 -  13974604 I
e pelSin1.JH211373           2650239  0 -   4257854 I
e calJac3.chr3             190755530 1172 - 190850796 I
e melUnd1.JH556568           2080313  0 +   4296882 I
e monDom5.chr3             315955221  0 - 527952102 I
e taeGut2.chrZ              13217382  0 +  72861351 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=595.000000
s hg38.chr8_KI270814v1_alt     74126 1 +    141812 G
s ponAbe2.chr8              59043695 1 + 153482349 G
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48117388 1 + 100215132 G
i nomLeu3.chr16            C 0 C 0
s saiBol1.JH378165          14122241 1 -  14256875 T
i saiBol1.JH378165         C 0 C 0
s panHod1.KE114653           1505728 1 -   2937107 G
i panHod1.KE114653         I 176 I 1
s bosTau8.chr27             18221748 1 +  45407902 t
i bosTau8.chr27            I 31 I 29
s oviAri3.chr26             17847665 1 +  44077779 g
i oviAri3.chr26            I 5 I 46
s capHir1.chr27             17933037 1 +  44118849 g
i capHir1.chr27            I 5 I 190
s anoCar2.chrUn_GL344195       36034 1 +     59083 G
i anoCar2.chrUn_GL344195   C 0 C 0
e odoRosDiv1.KB229312         752237 4 -   2017862 I
e canFam3.chr16             18194999 5 -  59632846 I
e felCat8.chrB1             20476596 4 + 206538554 I
e ornAna1.Contig22913           8772 0 +      9822 I
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637 0 -       895 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55059163 0 +  59856998 I
e pseHum1.KB221303            460951 0 -   1055857 I
e zonAlb1.KB913240            788825 0 -    852449 I
e colLiv1.KB375452           1391464 0 +   4234233 I
e allMis1.JH737334             63284 0 -    565068 I
e falPer1.KB390921           1613136 0 +   3698665 I
e falChe1.KB398121           1475198 0 +   3546035 I
e macEug2.GL053575             11374 0 +     74274 I
e galGal4.chrZ              23195869 3 -  82363669 I
e geoFor1.JH739942           1280732 0 +   5104860 I
e melGal1.chrZ              62956231 0 +  81011772 I
e anaPla1.KB742960            141378 0 +    531124 I
e amaVit1.KB238281               354 0 +      9836 I
e apaSpi1.KB928558           3295625 0 -   3719163 I
e cheMyd1.KB497515           3641299 0 +   9092468 I
e chrPic2.chrUn_KK082917v1  12457941 0 -  13974604 I
e pelSin1.JH211373           2650239 0 -   4257854 I
e calJac3.chr3             190755530 1172 - 190850796 I
e melUnd1.JH556568           2080313 0 +   4296882 I
e monDom5.chr3             315955221 0 - 527952102 I
e taeGut2.chrZ              13217382 0 +  72861351 I
e equCab2.chr27             18747010 4 -  39960074 I
e orcOrc1.KB316932           3031097 9 -  10937097 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=-119.000000
s hg38.chr8_KI270814v1_alt     74127 7 +    141812 GAATTGT-
s ponAbe2.chr8              59043696 7 + 153482349 GAATTGT-
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48117389 7 + 100215132 GAATTGT-
i nomLeu3.chr16            C 0 C 0
s saiBol1.JH378165          14122242 7 -  14256875 GAGTTGT-
i saiBol1.JH378165         C 0 C 0
s panHod1.KE114653           1505730 6 -   2937107 GATCTA--
i panHod1.KE114653         I 1 C 0
s bosTau8.chr27             18221778 6 +  45407902 -TATTGG-
i bosTau8.chr27            I 29 I 1
s oviAri3.chr26             17847712 7 +  44077779 ggactgc-
i oviAri3.chr26            I 46 I 124
s anoCar2.chrUn_GL344195       36035 7 +     59083 -AAGTATC
i anoCar2.chrUn_GL344195   C 0 C 0
e odoRosDiv1.KB229312         752237 4 -   2017862 I
e canFam3.chr16             18194999 5 -  59632846 I
e felCat8.chrB1             20476596 4 + 206538554 I
e capHir1.chr27             17933038 190 +  44118849 I
e ornAna1.Contig22913           8772 0 +      9822 I
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637 0 -       895 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55059163 0 +  59856998 I
e pseHum1.KB221303            460951 0 -   1055857 I
e zonAlb1.KB913240            788825 0 -    852449 I
e colLiv1.KB375452           1391464 0 +   4234233 I
e allMis1.JH737334             63284 0 -    565068 I
e falPer1.KB390921           1613136 0 +   3698665 I
e falChe1.KB398121           1475198 0 +   3546035 I
e macEug2.GL053575             11374 0 +     74274 I
e galGal4.chrZ              23195869 3 -  82363669 I
e geoFor1.JH739942           1280732 0 +   5104860 I
e melGal1.chrZ              62956231 0 +  81011772 I
e anaPla1.KB742960            141378 0 +    531124 I
e amaVit1.KB238281               354 0 +      9836 I
e apaSpi1.KB928558           3295625 0 -   3719163 I
e cheMyd1.KB497515           3641299 0 +   9092468 I
e chrPic2.chrUn_KK082917v1  12457941 0 -  13974604 I
e pelSin1.JH211373           2650239 0 -   4257854 I
e calJac3.chr3             190755530 1172 - 190850796 I
e melUnd1.JH556568           2080313 0 +   4296882 I
e monDom5.chr3             315955221 0 - 527952102 I
e taeGut2.chrZ              13217382 0 +  72861351 I
e equCab2.chr27             18747010 4 -  39960074 I
e orcOrc1.KB316932           3031097 9 -  10937097 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=-29987.000000
s hg38.chr8_KI270814v1_alt     74134 6 +    141812 -TTGAAT
s ponAbe2.chr8              59043703 6 + 153482349 -TTGAAT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48117396 6 + 100215132 -TTGAAT
i nomLeu3.chr16            C 0 C 0
s saiBol1.JH378165          14122249 6 -  14256875 -TGGACT
i saiBol1.JH378165         C 0 I 1
s orcOrc1.KB316932           3031106 4 -  10937097 ---AAAT
i orcOrc1.KB316932         I 9 C 0
s panHod1.KE114653           1505736 6 -   2937107 -TTGGGT
i panHod1.KE114653         C 0 I 11
s bosTau8.chr27             18221785 6 +  45407902 -TAAAAT
i bosTau8.chr27            I 1 I 7
s oviAri3.chr26             17847843 6 +  44077779 -TTGGGT
i oviAri3.chr26            I 124 I 11
s equCab2.chr27             18747014 1 -  39960074 -----A-
i equCab2.chr27            I 4 C 0
s felCat8.chrB1             20476600 1 + 206538554 -----A-
i felCat8.chrB1            I 4 C 0
s canFam3.chr16             18195004 4 -  59632846 --aaaa-
i canFam3.chr16            I 5 C 0
s odoRosDiv1.KB229312         752241 4 -   2017862 --AAAA-
i odoRosDiv1.KB229312      I 4 C 0
s anoCar2.chrUn_GL344195       36042 6 +     59083 CAGAAA-
i anoCar2.chrUn_GL344195   C 0 C 0
e capHir1.chr27             17933038 190 +  44118849 I
e ornAna1.Contig22913           8772 0 +      9822 I
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637 0 -       895 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55059163 0 +  59856998 I
e pseHum1.KB221303            460951 0 -   1055857 I
e zonAlb1.KB913240            788825 0 -    852449 I
e colLiv1.KB375452           1391464 0 +   4234233 I
e allMis1.JH737334             63284 0 -    565068 I
e falPer1.KB390921           1613136 0 +   3698665 I
e falChe1.KB398121           1475198 0 +   3546035 I
e macEug2.GL053575             11374 0 +     74274 I
e galGal4.chrZ              23195869 3 -  82363669 I
e geoFor1.JH739942           1280732 0 +   5104860 I
e melGal1.chrZ              62956231 0 +  81011772 I
e anaPla1.KB742960            141378 0 +    531124 I
e amaVit1.KB238281               354 0 +      9836 I
e apaSpi1.KB928558           3295625 0 -   3719163 I
e cheMyd1.KB497515           3641299 0 +   9092468 I
e chrPic2.chrUn_KK082917v1  12457941 0 -  13974604 I
e pelSin1.JH211373           2650239 0 -   4257854 I
e calJac3.chr3             190755530 1172 - 190850796 I
e melUnd1.JH556568           2080313 0 +   4296882 I
e monDom5.chr3             315955221 0 - 527952102 I
e taeGut2.chrZ              13217382 0 +  72861351 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=373069.000000
s hg38.chr8_KI270814v1_alt     74140 88 +    141812 AAAAAGAGTCAAATTTTACATTGGA-------TTAACCAGAGGGA------AGAAAGTAGATGGATAGGAAAGGAGAAGGCAGGCTTAGCCAAGCCAAAGA
s ponAbe2.chr8              59043709 88 + 153482349 AAAAAGAGTCAAATTTTACATTGGA-------TTAACCAGAGGGA------AGAAAGTAGATGGATAGGAAAGAAGAAGGCAGGCTTAGCCAAGCCAAAGA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48117402 88 + 100215132 AAAAAGAGTCAAATTTTACATTGGA-------TTAACCAGAGGGA------AGAAAGTAGATAGATAGGAAAGAAGAAGGCAGGCTTAGCCAAGCCAAAGA
i nomLeu3.chr16            C 0 C 0
s saiBol1.JH378165          14122256 88 -  14256875 AAAAAAAGTCAAATTTTACTTTGGA-------TTAATCAGAGGGA------AGAAAGAAGACAGATATGAAAGGAGAAGGCAGGATTAGCCAAATTAAAGG
i saiBol1.JH378165         I 1 C 0
s orcOrc1.KB316932           3031110 86 -  10937097 --AAAAAGTTTTAATATACATTGGA-------TCAAACAGAGGGG------AAAAAGTAGATGGAGAGGAAAGAAGAAGGCAGGCTTGGCCAAGCCAGTAA
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1505753 87 -   2937107 TAAGTAAGTTTTAATATACATTGGA-------TCCATCagaaggg-------aaaagcagatgaaaagaaaagaagaagGCAGGCTTGGCCAAGCCAAAGA
i panHod1.KE114653         I 11 C 0
s bosTau8.chr27             18221798 84 +  45407902 TAAATAAGTTTTAACATACATTGGC-------TCCATCAGAAGGG-------GAAAGCAGATGAAAAGAA---AAGAAGGAAGGCTTGGCCAAGCCAAAGA
i bosTau8.chr27            I 7 C 0
s oviAri3.chr26             17847860 87 +  44077779 TAAGTAAGTTTTAATATACATTGGA-------TCCATCAGAAGGG-------AAAAGCAGATAAAAAGAAAAGAAGAAGGCAGGCTTGGCCAAGCCAAAGA
i oviAri3.chr26            I 11 C 0
s capHir1.chr27             17933228 84 +  44118849 TAAATAAGTTTTAATATACATTGGA-------TCCATCagaaggg-------aaaagcagatgaaaagaa---aagaaGGCAGGCTTGGCCAAGCCAAAGA
i capHir1.chr27            I 190 C 0
s equCab2.chr27             18747015 85 -  39960074 AAAAAAAACCTAAATATATATTGGG-------TCAATCAGAGGGA------AAAAAGTAGATGGATAGGA---AAGAAGGCCGGCTTAGCGAAGCCAATGA
i equCab2.chr27            C 0 C 0
s felCat8.chrB1             20476601 85 + 206538554 AAAAAAAAGTTTAATATATATTGGA-------TCAATCAAAAGGA------AAAAAGTAGAAGGAGAGGA---AAGAAAGAAGGTTTGGCCAAGCCAATGA
i felCat8.chrB1            C 0 C 0
s canFam3.chr16             18195008 91 -  59632846 aaaaaaaattgtaatatatattGGA-------TCAATCATAGGGGAAAAAAAAAAAGTAGATGGGTAGAA---AAGAAGGCAGGCTTGGCCAAACCAATGA
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         752245 85 -   2017862 AAAAAAAATGTTAATATATATTGGA-------TCAATCAAAGGGG------AAAAAGTAGATGGATAGGA---AAGAAGGCAGTCTTGATGAAACCAGTGA
i odoRosDiv1.KB229312      C 0 C 0
s anoCar2.chrUn_GL344195       36048 93 +     59083 AAGAAAAGTC--ACTAAAATTTGGGATTTTGTTACACCACAGATA------AGTCATCAGATCCATAGCATATTAGATGGAAAACATAGCCAATGTAAAGA
i anoCar2.chrUn_GL344195   C 0 I 7270
e ornAna1.Contig22913           8772  0 +      9822 I
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637  0 -       895 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55059163  0 +  59856998 I
e pseHum1.KB221303            460951  0 -   1055857 I
e zonAlb1.KB913240            788825  0 -    852449 I
e colLiv1.KB375452           1391464  0 +   4234233 I
e allMis1.JH737334             63284  0 -    565068 I
e falPer1.KB390921           1613136  0 +   3698665 I
e falChe1.KB398121           1475198  0 +   3546035 I
e macEug2.GL053575             11374  0 +     74274 I
e galGal4.chrZ              23195869  3 -  82363669 I
e geoFor1.JH739942           1280732  0 +   5104860 I
e melGal1.chrZ              62956231  0 +  81011772 I
e anaPla1.KB742960            141378  0 +    531124 I
e amaVit1.KB238281               354  0 +      9836 I
e apaSpi1.KB928558           3295625  0 -   3719163 I
e cheMyd1.KB497515           3641299  0 +   9092468 I
e chrPic2.chrUn_KK082917v1  12457941  0 -  13974604 I
e pelSin1.JH211373           2650239  0 -   4257854 I
e calJac3.chr3             190755530 1172 - 190850796 I
e melUnd1.JH556568           2080313  0 +   4296882 I
e monDom5.chr3             315955221  0 - 527952102 I
e taeGut2.chrZ              13217382  0 +  72861351 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=172340.000000
s hg38.chr8_KI270814v1_alt     74228 47 +    141812 AAGAGACTAGACTCAGGAGGCACTGGGAGAAAAAGGAACTCTGTCAA
s ponAbe2.chr8              59043797 47 + 153482349 AAGAGACTAGACTCAGGAGGCACTGGGAGAAAAAGGAACTCTGTCAA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48117490 47 + 100215132 AAGAGACTAGACTCAGGAGGCATTGGGTGAAAAAGGAACTCTGTCAA
i nomLeu3.chr16            C 0 C 0
s saiBol1.JH378165          14122344 35 -  14256875 ATGAGGCTGAACTCAGGAGGCAGTGGGAGAATAGG------------
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3031196 47 -  10937097 ATGAAGCTAGACTTAGGAGGCACCAGGAGAAAAAGTAACTCTGCcat
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1505840 47 -   2937107 ACAACACTAGACTTAGCAGGCACCAGGAGAAAAAGGAACTCTGCCGA
i panHod1.KE114653         C 0 I 1
s bosTau8.chr27             18221882 47 +  45407902 ACAATACTAGACTCAGCAGGCACCAGGAGAAAAAGGAAGTCTGCCGA
i bosTau8.chr27            C 0 C 0
s oviAri3.chr26             17847947 47 +  44077779 ACAACACTAGACTTAGCAGGCACCAGGAGAAAAAGGAACTCTGCCGA
i oviAri3.chr26            C 0 I 1
s capHir1.chr27             17933312 47 +  44118849 ACAACACTAGACTTAGCAGGCACCAGGAGAAAAAGGAACTCTGCCGA
i capHir1.chr27            C 0 I 1
s equCab2.chr27             18747100 47 -  39960074 AATAAGCTAGACTTAGAAGGCACCAGGAGAAAAAGGAACTCTGtcct
i equCab2.chr27            C 0 C 0
s felCat8.chrB1             20476686 45 + 206538554 AG-AAACTACACCTAGCAGGCCCCA-GAGAAAAAGAAATTCTGACAT
i felCat8.chrB1            C 0 C 0
s canFam3.chr16             18195099 45 -  59632846 GG-AAGCTATACCTAGGAGGCCCCA-GAGAAAAAGGAGCTCTGACAT
i canFam3.chr16            C 0 C 0
s odoRosDiv1.KB229312         752330 45 -   2017862 AG-AAGCTAAACTTAGGAAGCCCTA-GAGATAAAGGAGCTCTGACAT
i odoRosDiv1.KB229312      C 0 C 0
e ornAna1.Contig22913           8772  0 +      9822 I
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637  0 -       895 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55059163  0 +  59856998 I
e anoCar2.chrUn_GL344195       36141 7270 +     59083 I
e pseHum1.KB221303            460951  0 -   1055857 I
e zonAlb1.KB913240            788825  0 -    852449 I
e colLiv1.KB375452           1391464  0 +   4234233 I
e allMis1.JH737334             63284  0 -    565068 I
e falPer1.KB390921           1613136  0 +   3698665 I
e falChe1.KB398121           1475198  0 +   3546035 I
e macEug2.GL053575             11374  0 +     74274 I
e galGal4.chrZ              23195869  3 -  82363669 I
e geoFor1.JH739942           1280732  0 +   5104860 I
e melGal1.chrZ              62956231  0 +  81011772 I
e anaPla1.KB742960            141378  0 +    531124 I
e amaVit1.KB238281               354  0 +      9836 I
e apaSpi1.KB928558           3295625  0 -   3719163 I
e cheMyd1.KB497515           3641299  0 +   9092468 I
e chrPic2.chrUn_KK082917v1  12457941  0 -  13974604 I
e pelSin1.JH211373           2650239  0 -   4257854 I
e calJac3.chr3             190755530 1172 - 190850796 I
e melUnd1.JH556568           2080313  0 +   4296882 I
e monDom5.chr3             315955221  0 - 527952102 I
e taeGut2.chrZ              13217382  0 +  72861351 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=19549.000000
s hg38.chr8_KI270814v1_alt     74275 18 +    141812 AGAAGAGTACCATT--ATAG
s ponAbe2.chr8              59043844 18 + 153482349 AGAAGAGTACCATT--ATAG
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48117537 18 + 100215132 AGAAGAGTACCATT--ATAG
i nomLeu3.chr16            C 0 C 0
s saiBol1.JH378165          14122379  7 -  14256875 -----------ATA--ATAG
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3031243 18 -  10937097 ggaagtattcaatc--ttag
i orcOrc1.KB316932         C 0 I 2
s equCab2.chr27             18747147 18 -  39960074 agaagtatacaatc--tcag
i equCab2.chr27            C 0 I 1
s felCat8.chrB1             20476731 18 + 206538554 AAAAATATACAACC--TTAg
i felCat8.chrB1            C 0 I 192
s canFam3.chr16             18195144 20 -  59632846 AAAAGTATACAATCTTTTTG
i canFam3.chr16            C 0 I 2
s odoRosDiv1.KB229312         752375 18 -   2017862 AAAAGTATAAAATC--TTAG
i odoRosDiv1.KB229312      C 0 I 2
e oviAri3.chr26             17847994  1 +  44077779 I
e bosTau8.chr27             18221929  0 +  45407902 C
e panHod1.KE114653           1505887  1 -   2937107 I
e capHir1.chr27             17933359  1 +  44118849 I
e ornAna1.Contig22913           8772  0 +      9822 I
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637  0 -       895 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55059163  0 +  59856998 I
e anoCar2.chrUn_GL344195       36141 7270 +     59083 I
e pseHum1.KB221303            460951  0 -   1055857 I
e zonAlb1.KB913240            788825  0 -    852449 I
e colLiv1.KB375452           1391464  0 +   4234233 I
e allMis1.JH737334             63284  0 -    565068 I
e falPer1.KB390921           1613136  0 +   3698665 I
e falChe1.KB398121           1475198  0 +   3546035 I
e macEug2.GL053575             11374  0 +     74274 I
e galGal4.chrZ              23195869  3 -  82363669 I
e geoFor1.JH739942           1280732  0 +   5104860 I
e melGal1.chrZ              62956231  0 +  81011772 I
e anaPla1.KB742960            141378  0 +    531124 I
e amaVit1.KB238281               354  0 +      9836 I
e apaSpi1.KB928558           3295625  0 -   3719163 I
e cheMyd1.KB497515           3641299  0 +   9092468 I
e chrPic2.chrUn_KK082917v1  12457941  0 -  13974604 I
e pelSin1.JH211373           2650239  0 -   4257854 I
e calJac3.chr3             190755530 1172 - 190850796 I
e melUnd1.JH556568           2080313  0 +   4296882 I
e monDom5.chr3             315955221  0 - 527952102 I
e taeGut2.chrZ              13217382  0 +  72861351 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=16542.000000
s hg38.chr8_KI270814v1_alt     74293 9 +    141812 TTTGAAGAG
s ponAbe2.chr8              59043862 9 + 153482349 TTTCAAGAG
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48117555 9 + 100215132 TTTCAAGAG
i nomLeu3.chr16            C 0 C 0
s saiBol1.JH378165          14122386 9 -  14256875 TTTAAATAG
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3031263 9 -  10937097 ttttaagag
i orcOrc1.KB316932         I 2 C 0
s equCab2.chr27             18747166 9 -  39960074 gttcaagag
i equCab2.chr27            I 1 C 0
s canFam3.chr16             18195166 9 -  59632846 TTTCAAGAG
i canFam3.chr16            I 2 I 57
s odoRosDiv1.KB229312         752395 9 -   2017862 TTTCAAAAG
i odoRosDiv1.KB229312      I 2 C 0
e felCat8.chrB1             20476749 192 + 206538554 I
e oviAri3.chr26             17847994 1 +  44077779 I
e bosTau8.chr27             18221929 0 +  45407902 C
e panHod1.KE114653           1505887 1 -   2937107 I
e capHir1.chr27             17933359 1 +  44118849 I
e ornAna1.Contig22913           8772 0 +      9822 I
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637 0 -       895 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55059163 0 +  59856998 I
e anoCar2.chrUn_GL344195       36141 7270 +     59083 I
e pseHum1.KB221303            460951 0 -   1055857 I
e zonAlb1.KB913240            788825 0 -    852449 I
e colLiv1.KB375452           1391464 0 +   4234233 I
e allMis1.JH737334             63284 0 -    565068 I
e falPer1.KB390921           1613136 0 +   3698665 I
e falChe1.KB398121           1475198 0 +   3546035 I
e macEug2.GL053575             11374 0 +     74274 I
e galGal4.chrZ              23195869 3 -  82363669 I
e geoFor1.JH739942           1280732 0 +   5104860 I
e melGal1.chrZ              62956231 0 +  81011772 I
e anaPla1.KB742960            141378 0 +    531124 I
e amaVit1.KB238281               354 0 +      9836 I
e apaSpi1.KB928558           3295625 0 -   3719163 I
e cheMyd1.KB497515           3641299 0 +   9092468 I
e chrPic2.chrUn_KK082917v1  12457941 0 -  13974604 I
e pelSin1.JH211373           2650239 0 -   4257854 I
e calJac3.chr3             190755530 1172 - 190850796 I
e melUnd1.JH556568           2080313 0 +   4296882 I
e monDom5.chr3             315955221 0 - 527952102 I
e taeGut2.chrZ              13217382 0 +  72861351 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=1911.000000
s hg38.chr8_KI270814v1_alt     74302 1 +    141812 A
s ponAbe2.chr8              59043871 1 + 153482349 A
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48117564 1 + 100215132 A
i nomLeu3.chr16            C 0 C 0
s saiBol1.JH378165          14122395 1 -  14256875 A
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3031272 1 -  10937097 a
i orcOrc1.KB316932         C 0 C 0
s equCab2.chr27             18747175 1 -  39960074 a
i equCab2.chr27            C 0 C 0
s odoRosDiv1.KB229312         752404 1 -   2017862 A
i odoRosDiv1.KB229312      C 0 C 0
e canFam3.chr16             18195175 57 -  59632846 I
e felCat8.chrB1             20476749 192 + 206538554 I
e oviAri3.chr26             17847994 1 +  44077779 I
e bosTau8.chr27             18221929 0 +  45407902 C
e panHod1.KE114653           1505887 1 -   2937107 I
e capHir1.chr27             17933359 1 +  44118849 I
e ornAna1.Contig22913           8772 0 +      9822 I
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637 0 -       895 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55059163 0 +  59856998 I
e anoCar2.chrUn_GL344195       36141 7270 +     59083 I
e pseHum1.KB221303            460951 0 -   1055857 I
e zonAlb1.KB913240            788825 0 -    852449 I
e colLiv1.KB375452           1391464 0 +   4234233 I
e allMis1.JH737334             63284 0 -    565068 I
e falPer1.KB390921           1613136 0 +   3698665 I
e falChe1.KB398121           1475198 0 +   3546035 I
e macEug2.GL053575             11374 0 +     74274 I
e galGal4.chrZ              23195869 3 -  82363669 I
e geoFor1.JH739942           1280732 0 +   5104860 I
e melGal1.chrZ              62956231 0 +  81011772 I
e anaPla1.KB742960            141378 0 +    531124 I
e amaVit1.KB238281               354 0 +      9836 I
e apaSpi1.KB928558           3295625 0 -   3719163 I
e cheMyd1.KB497515           3641299 0 +   9092468 I
e chrPic2.chrUn_KK082917v1  12457941 0 -  13974604 I
e pelSin1.JH211373           2650239 0 -   4257854 I
e calJac3.chr3             190755530 1172 - 190850796 I
e melUnd1.JH556568           2080313 0 +   4296882 I
e monDom5.chr3             315955221 0 - 527952102 I
e taeGut2.chrZ              13217382 0 +  72861351 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=21371.000000
s hg38.chr8_KI270814v1_alt     74303 19 +    141812 GCTGAGAGGCTGTTAAGTC
s ponAbe2.chr8              59043872 19 + 153482349 GCTGAGAGGTTGTTAAGTC
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48117565 19 + 100215132 GCTGAGAGGTTGTTAAGTC
i nomLeu3.chr16            C 0 C 0
s saiBol1.JH378165          14122396 19 -  14256875 GCTGAGAGGCTGTTTAGTT
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3031273 19 -  10937097 gcagagagactgtttagtc
i orcOrc1.KB316932         C 0 C 0
s equCab2.chr27             18747176 19 -  39960074 gctgagagattgtttagtc
i equCab2.chr27            C 0 C 0
e odoRosDiv1.KB229312         752405  0 -   2017862 C
e canFam3.chr16             18195175 57 -  59632846 I
e felCat8.chrB1             20476749 192 + 206538554 I
e oviAri3.chr26             17847994  1 +  44077779 I
e bosTau8.chr27             18221929  0 +  45407902 C
e panHod1.KE114653           1505887  1 -   2937107 I
e capHir1.chr27             17933359  1 +  44118849 I
e ornAna1.Contig22913           8772  0 +      9822 I
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637  0 -       895 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55059163  0 +  59856998 I
e anoCar2.chrUn_GL344195       36141 7270 +     59083 I
e pseHum1.KB221303            460951  0 -   1055857 I
e zonAlb1.KB913240            788825  0 -    852449 I
e colLiv1.KB375452           1391464  0 +   4234233 I
e allMis1.JH737334             63284  0 -    565068 I
e falPer1.KB390921           1613136  0 +   3698665 I
e falChe1.KB398121           1475198  0 +   3546035 I
e macEug2.GL053575             11374  0 +     74274 I
e galGal4.chrZ              23195869  3 -  82363669 I
e geoFor1.JH739942           1280732  0 +   5104860 I
e melGal1.chrZ              62956231  0 +  81011772 I
e anaPla1.KB742960            141378  0 +    531124 I
e amaVit1.KB238281               354  0 +      9836 I
e apaSpi1.KB928558           3295625  0 -   3719163 I
e cheMyd1.KB497515           3641299  0 +   9092468 I
e chrPic2.chrUn_KK082917v1  12457941  0 -  13974604 I
e pelSin1.JH211373           2650239  0 -   4257854 I
e calJac3.chr3             190755530 1172 - 190850796 I
e melUnd1.JH556568           2080313  0 +   4296882 I
e monDom5.chr3             315955221  0 - 527952102 I
e taeGut2.chrZ              13217382  0 +  72861351 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=41772.000000
s hg38.chr8_KI270814v1_alt     74322 98 +    141812 CCCCATGTCGTtcctaatccaaaaacacccgatcctaaacactataatcctgaatgttgaaatcctgaaacatcaaaatccctaa-gtctaaaatcctt
s ponAbe2.chr8              59043891 98 + 153482349 CCC-ATGTCGTtcttaatccaaaaacacccgatcctaaacactataatcctgaatgttgaaatcctgaaacatcaaaatccctaaagtctacaatcctt
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48117584 98 + 100215132 CCC-ATGTCATtcttaatccaaaaacacctgatcctaaacactataatcctgaatgttgaaatcctgaaacatcaaaatccctaaagtccaaaatcctt
i nomLeu3.chr16            C 0 C 0
s saiBol1.JH378165          14122415 98 -  14256875 CCG-GTGAggctcataatcccaaaatacccaatcccaaacaccataaccctgaatgttgaaatcctgaaagatcaaaattcctaacgtctaaatttttt
i saiBol1.JH378165         C 0 I 3509
e odoRosDiv1.KB229312         752405  0 -   2017862 C
e canFam3.chr16             18195175 57 -  59632846 I
e felCat8.chrB1             20476749 192 + 206538554 I
e oviAri3.chr26             17847994  1 +  44077779 I
e bosTau8.chr27             18221929  0 +  45407902 C
e panHod1.KE114653           1505887  1 -   2937107 I
e capHir1.chr27             17933359  1 +  44118849 I
e ornAna1.Contig22913           8772  0 +      9822 I
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637  0 -       895 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55059163  0 +  59856998 I
e anoCar2.chrUn_GL344195       36141 7270 +     59083 I
e pseHum1.KB221303            460951  0 -   1055857 I
e zonAlb1.KB913240            788825  0 -    852449 I
e colLiv1.KB375452           1391464  0 +   4234233 I
e allMis1.JH737334             63284  0 -    565068 I
e falPer1.KB390921           1613136  0 +   3698665 I
e falChe1.KB398121           1475198  0 +   3546035 I
e macEug2.GL053575             11374  0 +     74274 I
e galGal4.chrZ              23195869  3 -  82363669 I
e geoFor1.JH739942           1280732  0 +   5104860 I
e melGal1.chrZ              62956231  0 +  81011772 I
e anaPla1.KB742960            141378  0 +    531124 I
e amaVit1.KB238281               354  0 +      9836 I
e apaSpi1.KB928558           3295625  0 -   3719163 I
e cheMyd1.KB497515           3641299  0 +   9092468 I
e chrPic2.chrUn_KK082917v1  12457941  0 -  13974604 I
e pelSin1.JH211373           2650239  0 -   4257854 I
e calJac3.chr3             190755530 1172 - 190850796 I
e melUnd1.JH556568           2080313  0 +   4296882 I
e monDom5.chr3             315955221  0 - 527952102 I
e taeGut2.chrZ              13217382  0 +  72861351 I
e equCab2.chr27             18747195  0 -  39960074 C
e orcOrc1.KB316932           3031292  0 -  10937097 C
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=378899.000000
s hg38.chr8_KI270814v1_alt     74420 1427 +    141812 atc---taacatccagaagatcactatcacaggacagttgcaccatggtattgcatcatgttaaatgtaattatttccttgtttactctttattcggaaattaagcatggctaagaaggtatgtagaggtgccaagtcaacaaggggtgg-acccatggacttaattttaggtgtcaacttggctgggttaaggaatgtctggaaacttggtaaagcattattttgggtatgcctcgagggtgttctcagaaaagattaatgtgtaggtctgagtggactaggtgggaaagatctgtcaatgtctggaatatagaaaaagtgaaaatgaaggtaaaaaatgcacagaatctttcctgccgaattattattgatgtacaacttctgacacttgccttcacaaaatgccctttgtcagagaataaaaagagttcaacaagcttggcggccttctgaaccaggtacttgctggcacagaggttccttcagggctacaagacacattaagtcatgaactattcttgattaaagatttgactgtgaaagaagatagacatatttatttaccactaaatctaacattaaaaaaaatgcatgttttactttggctaatgaatgtcactttcaaaaccatccctagtgtttctttgtttgtttttaccaactttatacaatttatgcgtctatcagattccaaaattctataatgtaatatactgtttatgtattactggctggaaaaagtgaggcattttataaatgtttatttgaagatttggtggactttgcagaagaaaatagatttcaattgcatccccaagttaaaatgacaggtttggaactaggtgtgacaaaggcttctgaaagtgaattgcaaggtgttaccagtaaagtttgcttttccatttagtccaattcatttggtggaaaattcaggtgagtttagtggccaagcccatatggcagtgatgaaaattttagtttaaaaatgcatcgtttatccatagtggcatttcttctacccgataaaattccaggagcttttaacaaattaaaccacattttcctaaagaagccagcaaggttacttactggtttaaaaataattatgtgcaaggtaagataagaagtcatttagggccaggcatggtggcttatgcctgtaatcacaggattttgggaggcaaaggtgggtgaatcacttgaagtcaggagttcaagaccagcctggccaacatggcgataccttgtctctactaaaaatacaaaaattatccgagtgtggtggcacacacctgtaatctcagctactcggaaggctgaggcaggaggatcccttgaacccaagagggggaggttgcagtgagccgaggtcatgccactgcactccagcctgggcaacagagtgagactctgtcttattaaaaaaaaag
s ponAbe2.chr8              59043989 1424 + 153482349 atcatctaacatccagaaaatcactgtcacaggacagttgcaccatggtattgcatcatgttaaatgtaatt-tttttttgtttactctttatttggaaattaagcatggctaagaaggtatgtataggtgccaagtcaacaaggggtgggacccatggacttaattttaggtgtcaacttggctgggttaaggaatgtctggaaacttgttaaagcattattttgagtatgcctcgagggtgttttcagaaaagattaatgtgtaggtctgagtggactaggtgggaaagatctgtcaatgtctggaatatagaaaaagtgaaaatgaaggtaaaaaatgcacagaatctttcctgccaaattattattgatgtacaacttctgccacttgccttcacaaaatgccctttgtcagagaataaaaggagttcaacaagcttggcggccttctgaaccaggtacttgctggcacagaggttccttcagggctacaagacacattaagtcatgaactattcttgattaaagatttgactgtgaaagaagatagacatatttatttaccactaaatctaacat--aaaaaaatgcatgttttactttggctaatgaatgtcactttcaaaaccgtccctggtgtttctttgttt----ttaccaactttatacaatttatgcgtctatcagattctaaaattctataatttaatatactgtttatgtattactggctggaaaaagtgaggcattttataaatgtttatttgaagatttggtggactttgcagaagaaaatagatttcaattgcatccccaaattaaaatgacaggtttggaactaggtgtgacaaaggcttctgaaagtgaattgcaaagtgttaccagtaaagtttgtttttccatttagtccaattcatttggtggaaaattcagaagagtttagtggccaagcccatatggcagtgatgaaaattttagtttagaaatgcatcatttatccatagtggcatttcttccacctgatgaaatttcaggagcttttaatgaattaaaccacattttcctaaagaagccagcaaggttacttactggtttaaaaataattatgtgcaaggtaggataagaagtcatttagggccaggcatggtggcttatgcctgtaatcccaggactttgggaggcaaaggtgggtgaatcacttgaagtcaggagttcaagaccagcctggccaacatggcgataccttgtctctactaaaaatacaaaaattatccgagtgtggtggcacagacctgtaatctcagctactcggaaggctgaggcgggaggatctcttgaacccaagaggtggaggttgcagtgagccgaggtcatgccactgcactccagcctgggcaacagagtgagactctgtctcattaaaaaaaaag
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48117682 1421 + 100215132 atcatctaaaatccagaaaatcactatcatgggacagttgcaccatggtattgcatcatgttaaatgtaattatttccttgtttactctttatttggaaattaagcatggctaagaaggtatgtataggtgccaagtcaacaaggggtgg-acccatggacttaattttaggtgtcaacttggctgggttaaggactgtctggaaacttggtaaagcattattttgggtatgcctcgagggtgttctcagaaaagattaatgtgtaggtctgagtggactaggtaggaaagatctgtcaatgtctggaatatagaaaaagtgaaaatgaaggtaaaaaatgcacagaatctttcctgccaaattattattgatgtacaacttctgccacttgccttcacaaaatgccctttgtcagagaataaaaagagttcaacaagcttggcggccttctgaaccagatacttgctagcacagaggttcctgcagggctacaagacacattaagttatgaactattcttgattaaagatttgactgtgaaagaagatagacatatttatttaccactaaatctaacat--aaaaaaatgcatgttttactttggctaatgaatgtcactttcaaaaccatccctggtgtttgtttgttt----ttaccaactttatacaatttatgcgtctattggattccaaaattctataatttaatatactgtttatgtattactggctggaaaaagtgaggcattttataaatgtttatttgaagatttggtggactctgcagaagaaaatagatttcaattgcatccccaaattaaaatgacaggtttggaactaggtgtgacaaaggcttctgaaagtgaattgcaaggtgttaccagtaaagttagtttttccatttagtccaattcatttggtggaaaattcagatgagtttagtggccaagcccatatggcagtgatgaaaattttagtttaaaaatgcatcatttatccatagtggcatttcttccacctgatgaaattccaggagcttttaatgaattaaaccacattttcctaaagaagccagcaaggttacttacaggtttaaaaataattatgtgcaaggtaggataagaagtcatttagggccaggaatggtggcttatgcctgtaatcccaggacttagggaggcaaaggtggatgaatcacttgaagtcagaagttcaagaccagcctggccaacatggtgataccttgtctctactaaaaatacaaaaattatctgaatgtggtggcacacacctgtaatctcagctactcggaaggctgaggcaggaggatcccttgaacccaagagggggaggttgcagtgagccgaggtcatgccactgcactccagcctgggcaacagagtgagactctgtctcattaaaaaaa---
i nomLeu3.chr16            C 0 C 0
e odoRosDiv1.KB229312         752405    0 -   2017862 C
e canFam3.chr16             18195175   57 -  59632846 I
e felCat8.chrB1             20476749  192 + 206538554 I
e oviAri3.chr26             17847994    1 +  44077779 I
e bosTau8.chr27             18221929    0 +  45407902 C
e panHod1.KE114653           1505887    1 -   2937107 I
e capHir1.chr27             17933359    1 +  44118849 I
e ornAna1.Contig22913           8772    0 +      9822 I
e tetNig2.chr13              4300044  851 -  13302670 T
e punNye1.JH419232           4767720  338 +   5065651 T
e mayZeb1.JH720588           2493684  338 +   2778784 T
e hapBur1.JH425411           1657068  338 +   1983257 T
e neoBri1.JH422276           4185134  338 -  16571924 T
e araMac1.AOUJ01470298           637    0 -       895 I
e astMex1.KB882082           3904961  703 -   8876373 T
e takFla1.KE120500            511214  428 +    663757 T
e fr3.chr9                   3741472  428 -  13922460 T
e ficAlb2.chrZ              55059163    0 +  59856998 I
e anoCar2.chrUn_GL344195       36141 7270 +     59083 I
e pseHum1.KB221303            460951    0 -   1055857 I
e zonAlb1.KB913240            788825    0 -    852449 I
e colLiv1.KB375452           1391464    0 +   4234233 I
e allMis1.JH737334             63284    0 -    565068 I
e falPer1.KB390921           1613136    0 +   3698665 I
e falChe1.KB398121           1475198    0 +   3546035 I
e macEug2.GL053575             11374    0 +     74274 I
e galGal4.chrZ              23195869    3 -  82363669 I
e geoFor1.JH739942           1280732    0 +   5104860 I
e melGal1.chrZ              62956231    0 +  81011772 I
e anaPla1.KB742960            141378    0 +    531124 I
e amaVit1.KB238281               354    0 +      9836 I
e apaSpi1.KB928558           3295625    0 -   3719163 I
e cheMyd1.KB497515           3641299    0 +   9092468 I
e chrPic2.chrUn_KK082917v1  12457941    0 -  13974604 I
e pelSin1.JH211373           2650239    0 -   4257854 I
e calJac3.chr3             190755530 1172 - 190850796 I
e melUnd1.JH556568           2080313    0 +   4296882 I
e monDom5.chr3             315955221    0 - 527952102 I
e taeGut2.chrZ              13217382    0 +  72861351 I
e equCab2.chr27             18747195    0 -  39960074 C
e orcOrc1.KB316932           3031292    0 -  10937097 C
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e saiBol1.JH378165          14122513 3509 -  14256875 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=318359.000000
s hg38.chr8_KI270814v1_alt     75847 746 +    141812 aaaagtcatttaggcaatggtgttgctgtccaatcaacagtattgtttctgccaaatttgtggcctgtagattagtgcatgcaaagtagat--------actcaaaacaatatagaagcatggcgtagaagattgaaaaacataataggaagtgttcatctcagtgtatattgaattacagaagaatttcagagtgagcagtgcgacatagaaaatgaatgtgaacatattctctgagatgtgaacatattctctgaggaaagtcatgtccttaaaggcagctatttattgtgatgcaagacttcaaaatacagttaataatcataaaagtcaactagctattatgaactctgcgtagttgcccataatctatccctgtaatgta-tttttatatgtcagttttctttttagttttatttttaagtttttttccactattttaaattgtcagcattatttatttacaactcactatgctgtgtatttcttcttagcatcatttccagtactgaaggtataaactgtgtaaagagttttagagagttctaatttgctttatg----------cattttttttgcaactttgactccacaaaagtgcattatc---acattgactttatgtgtaagcgttgtttgtaaacctaaaaatattaaaactttctcaatagatgagata--ttctttttgcatatctgcatttgtgaaagagaaaatttctgagaatctctttgactttgactgcatattcggtgatgatctgtga
s ponAbe2.chr8              59045413 753 + 153482349 aaaagtcatttaggcaatgatgttgctgtccaatcaacagtattgtttctgccaaatttgtggcctgtatattagtgcatgcaaagtagatttccacatactcaaaacaatatagaagcatggcgtagaagactgaaaaacataataggaagtgttcatttcagtgtatattgaattacagaagagtttcagagtgagcagtgcgacatagaaaatgaatgtgaacatattctctgagatgtgaacatattctctgagcaaagtcatgtccttaaaggcagctattttttgtgatgcaagacttcaaaatacagttaataatcataaaagtcaactagctattatgaactctgtgtagttgcccataatctatccctgtaatgca-tttttatatgtcagttttctttttagttttatttttaagtttgtt-ccactattttaaattgtcagcattatttatttacaactcgctgtgctatgtatttcatcttagcatcattttcagtactgaaggtataacctgtgtaaagagttttagagagttctaatttgctttatg----------cattttttttacaactttgactccacaaaagtgcattatc---acattgactttatgtgtaagcattgtttgtaaacctaaaaatattaaaactttctcaatagatgagata--ttctttctgcatatctgcatttgtgaaagagaaaatttctgagaatctctttgactttgactgcatattcggtgatgatctgtga
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48119103 743 + 100215132 aaaagtcatttaggcaatggtgttgctgtccaatcaacagtgttgtttctgccaaatttgtggcctgtagattagtacatgcaaagtagatttccacatactcaaaacaatatagaagcatggcgtacaagattgaaaaacataataggaagtgttcatctcagtgtatattgaattacagaagaatttcagagtgagcagtgtgacac--aaaatgaatgtgaacatattctctgagatgtgaacatattctctgaggaaagtcatgtc---aaaggcagctatttattgtgatgcaagacttcaaaatacagttaatcatcataaaagtcaactagctattatgaactctgtgtagttgccaataatctatccctgtaatgta-tttttatatgtcagttttctttttagttttatttttaagtttgtt-ccactatt-----ttgtcagcattatttatttacaacttgctatgctatgtatttcatcttagcatcatttccaatactgaaggtataaactgtgtaaagagttttagagagttctaatttgctttatg----------cattttttttgcaactttgactccacaaaagtgcattatc---acattgactttatgtgtaagcattgtttgtaaacctaaaaatattaaaactttctcaaaagatgagata--ttctttttgcatatctgcatttgtgaaagagaaaatttctgagaatctctttgactttgactgcatattcggtgatgatctgtga
i nomLeu3.chr16            C 0 C 0
s saiBol1.JH378165          14126022 749 -  14256875 agaagtcatttaggcaatggtgttgctgttcaatcaacagtactgcttctgccaaatgtgtggcctgtaaatgagggtctgcaaaatgaatttctacatactcaaaacaatagagaaccatggcatagaggattgaaaaacataagagaaaatgctcatgtcagtgtatatgaaattatagaagaatttcaaaaacagcagtgctacataggaaatgaatgtgaatgtatttt------tatgagtcaagtcctagaaacaaa----------aaaggcaactattcattgtgatgcaagacatcataatacagttaatgatcatcaaagtcagccagctattatgaacaattc--aaatgcttataagctatccctgtaatatactttttatatgtcaattttctttttagttgttttttccattttttt-ccactattttaaattgtcagcattattt-tttacaactcactatgctatacgtttcatcttagtatcatttccaatactggaggtataaattgtgtaaagacttttagagagttctaatttgttttatgttttgttttttttttttttggcaactctgtctccaagagagtacgttaacacaacactgagtttgtgtgtaagcattgtatgtgtacataaaaacattaaagctgccttaataaatgagaaaatatccttttgcacatttgcatttgggaaagaaaaaaattctcaagatctcagct-ctttgactgcatattaggtggtgacccatcc
i saiBol1.JH378165         I 3509 C 0
e odoRosDiv1.KB229312         752405   0 -   2017862 C
e canFam3.chr16             18195175  57 -  59632846 I
e felCat8.chrB1             20476749 192 + 206538554 I
e oviAri3.chr26             17847994   1 +  44077779 I
e bosTau8.chr27             18221929   0 +  45407902 C
e panHod1.KE114653           1505887   1 -   2937107 I
e capHir1.chr27             17933359   1 +  44118849 I
e ornAna1.Contig22913           8772   0 +      9822 I
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637   0 -       895 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55059163   0 +  59856998 I
e anoCar2.chrUn_GL344195       36141 7270 +     59083 I
e pseHum1.KB221303            460951   0 -   1055857 I
e zonAlb1.KB913240            788825   0 -    852449 I
e colLiv1.KB375452           1391464   0 +   4234233 I
e allMis1.JH737334             63284   0 -    565068 I
e falPer1.KB390921           1613136   0 +   3698665 I
e falChe1.KB398121           1475198   0 +   3546035 I
e macEug2.GL053575             11374   0 +     74274 I
e galGal4.chrZ              23195869   3 -  82363669 I
e geoFor1.JH739942           1280732   0 +   5104860 I
e melGal1.chrZ              62956231   0 +  81011772 I
e anaPla1.KB742960            141378   0 +    531124 I
e amaVit1.KB238281               354   0 +      9836 I
e apaSpi1.KB928558           3295625   0 -   3719163 I
e cheMyd1.KB497515           3641299   0 +   9092468 I
e chrPic2.chrUn_KK082917v1  12457941   0 -  13974604 I
e pelSin1.JH211373           2650239   0 -   4257854 I
e calJac3.chr3             190755530 1172 - 190850796 I
e melUnd1.JH556568           2080313   0 +   4296882 I
e monDom5.chr3             315955221   0 - 527952102 I
e taeGut2.chrZ              13217382   0 +  72861351 I
e equCab2.chr27             18747195   0 -  39960074 C
e orcOrc1.KB316932           3031292   0 -  10937097 C
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=278309.000000
s hg38.chr8_KI270814v1_alt     76593 468 +    141812 cagcttttgatcaatctggtctaaagacctaggtagtctgtcacagtatttcagatgacct--gttataacactggatgcacacaactactaaccatgcatttatgcattttgcttattgacctatttttt-----atat--gattcatctgctcataaatgttatacccatgtgactctgattaatatacc----tgtttatgcttgcaaacatatgtatgatgttgttgcctattttattttgtaaggtgacctaggaagtattctgttgtgttttttatgtttctcaaataaatcccctcctaaaaatgtcaataaatgccttttaaatca------------ttttttccagatttatagttttagaat----tttggggttt-gggggattgtaatttt-aggattttagactgtagagatgtatatctttttggagttcaacatttgggataatggcattcaggattgtgtctttctggattatggcccagac
s ponAbe2.chr8              59046166 467 + 153482349 cagcttttgatcaatctggtctaaagacctaggtagtctgtcccactatttcagatgacct--gttataacactggatgcacacaactactaaccatgcatttatgcattttgctttttgacctatttttt-----atat--gattcatctgctcataaatgttatacccgtgtgactctgattaatatacc----tgtttatgcttgcaaacatatgtatgttgttgttgcctattttattttgtaaggtgacctaggaagtattctgttgt--tttttatgtttctcaaataaatcccctcctaaaaatgtcaataaatgccttttaaatca------------ttttttccagatttatagttttagaat----tttggggttttgggggattgtaatttt-aggattttagactgtagagatgtatatctttttggagttcaacatttgggataatggcattcaggattgtgtctttctggattatggcccagac
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48119846 398 + 100215132 cagcttttgatcaatctggtctaaagacctaggtagtctgtcacagtatttcagatgacct--gttataacactggatgcacacaactactaaccattcatttatgcattttgctttttggcctatttttt-----atat--gattcatctgctcataaatgttatacccgtgtgactctgattaatatacc----tgtttatgcttgcaaacatatgtatgttG-----------------------------------------------------------------------tcctctcctaaaaatgtcaataaatgccttttaaatca------------ttttttccagatttatagttttagaat----tttggggtttttgaggattgtaatttt-aggattttagactgtagagatgtatatctttttggagttcaacatctgggataatggcattcaggattgtgtctttctggattatggcctagac
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190756702 484 - 190850796 cagcttttgatgaatctggtcaaaagacttagtttgtctgtcacagtattacagctgacctaagttataaagctgagtgcacccagttaccaaccataaattcatacagttt-----ttgacccatttctttacgagtactaaactcatctgcttgttactgttatacccataagactctcattagtatacttgagtgtttatgcttgcaaatatatgtacgttattattgccta-ttgatggtgtaaagtagcctaggaactgttctgttgtgttttataggtttctcaaatatatcccatcttaaaaatataaataaatgctttttaaaggatgttttaata--ttttttccagaattgtattttcagaac----ttt---ttttttgagaattgtaattttcaggattttagactgtagtgatttcgatattttgggacttcaacatttgggattatgatgttcaggattgtgtctttctggactgtggcccaaac
i calJac3.chr3             I 1172 C 0
s saiBol1.JH378165          14126771 485 -  14256875 cagcttttgatgaatctggtcaaaagacttactttgtctatcacagtatttcagctgacctaagttat-aagctgagtgcatccagttaccaaccatacattcatacatttt-----ttgacccatttctttatgagtac--aactcatctgttcattactgttaaacccataagactctcattggtatacttgagtgtttatgcttgcaaacatatgtacattattattgccta-ttgattgtgtaaagtggcctaggaactgttctgttgtgttttataggtttcccaaatatatcccatcttaaaaatataaataaatgctttttaaagaatgttttaatattttttttccagaattgtattttcagaacttttttt---ttttttgagaattgtaattttcaggattttagac--tagtgatttagatcttttgggacttcaacatttgggattatgatgttcaggattgtgtctttctggactgtggcccaaac
i saiBol1.JH378165         C 0 C 0
e odoRosDiv1.KB229312         752405   0 -   2017862 C
e canFam3.chr16             18195175  57 -  59632846 I
e felCat8.chrB1             20476749 192 + 206538554 I
e oviAri3.chr26             17847994   1 +  44077779 I
e bosTau8.chr27             18221929   0 +  45407902 C
e panHod1.KE114653           1505887   1 -   2937107 I
e capHir1.chr27             17933359   1 +  44118849 I
e ornAna1.Contig22913           8772   0 +      9822 I
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637   0 -       895 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55059163   0 +  59856998 I
e anoCar2.chrUn_GL344195       36141 7270 +     59083 I
e pseHum1.KB221303            460951   0 -   1055857 I
e zonAlb1.KB913240            788825   0 -    852449 I
e colLiv1.KB375452           1391464   0 +   4234233 I
e allMis1.JH737334             63284   0 -    565068 I
e falPer1.KB390921           1613136   0 +   3698665 I
e falChe1.KB398121           1475198   0 +   3546035 I
e macEug2.GL053575             11374   0 +     74274 I
e galGal4.chrZ              23195869   3 -  82363669 I
e geoFor1.JH739942           1280732   0 +   5104860 I
e melGal1.chrZ              62956231   0 +  81011772 I
e anaPla1.KB742960            141378   0 +    531124 I
e amaVit1.KB238281               354   0 +      9836 I
e apaSpi1.KB928558           3295625   0 -   3719163 I
e cheMyd1.KB497515           3641299   0 +   9092468 I
e chrPic2.chrUn_KK082917v1  12457941   0 -  13974604 I
e pelSin1.JH211373           2650239   0 -   4257854 I
e melUnd1.JH556568           2080313   0 +   4296882 I
e monDom5.chr3             315955221   0 - 527952102 I
e taeGut2.chrZ              13217382   0 +  72861351 I
e equCab2.chr27             18747195   0 -  39960074 C
e orcOrc1.KB316932           3031292   0 -  10937097 C
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=2800.000000
s hg38.chr8_KI270814v1_alt     77061 1 +    141812 c
s ponAbe2.chr8              59046633 1 + 153482349 c
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48120244 1 + 100215132 c
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190757186 1 - 190850796 c
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14127256 1 -  14256875 c
i saiBol1.JH378165         C 0 C 0
s bosTau8.chr27             18221929 1 +  45407902 C
i bosTau8.chr27            C 0 C 0
s felCat8.chrB1             20476941 1 + 206538554 C
i felCat8.chrB1            I 192 C 0
s odoRosDiv1.KB229312         752405 1 -   2017862 C
i odoRosDiv1.KB229312      C 0 C 0
e canFam3.chr16             18195175 57 -  59632846 I
e oviAri3.chr26             17847994 1 +  44077779 I
e panHod1.KE114653           1505887 1 -   2937107 I
e capHir1.chr27             17933359 1 +  44118849 I
e ornAna1.Contig22913           8772 0 +      9822 I
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637 0 -       895 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55059163 0 +  59856998 I
e anoCar2.chrUn_GL344195       36141 7270 +     59083 I
e pseHum1.KB221303            460951 0 -   1055857 I
e zonAlb1.KB913240            788825 0 -    852449 I
e colLiv1.KB375452           1391464 0 +   4234233 I
e allMis1.JH737334             63284 0 -    565068 I
e falPer1.KB390921           1613136 0 +   3698665 I
e falChe1.KB398121           1475198 0 +   3546035 I
e macEug2.GL053575             11374 0 +     74274 I
e galGal4.chrZ              23195869 3 -  82363669 I
e geoFor1.JH739942           1280732 0 +   5104860 I
e melGal1.chrZ              62956231 0 +  81011772 I
e anaPla1.KB742960            141378 0 +    531124 I
e amaVit1.KB238281               354 0 +      9836 I
e apaSpi1.KB928558           3295625 0 -   3719163 I
e cheMyd1.KB497515           3641299 0 +   9092468 I
e chrPic2.chrUn_KK082917v1  12457941 0 -  13974604 I
e pelSin1.JH211373           2650239 0 -   4257854 I
e melUnd1.JH556568           2080313 0 +   4296882 I
e monDom5.chr3             315955221 0 - 527952102 I
e taeGut2.chrZ              13217382 0 +  72861351 I
e equCab2.chr27             18747195 0 -  39960074 C
e orcOrc1.KB316932           3031292 0 -  10937097 C
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=19081.000000
s hg38.chr8_KI270814v1_alt     77062  9 +    141812 TGTTT-ATTT
s ponAbe2.chr8              59046634  9 + 153482349 TGTTT-AGTT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48120245  9 + 100215132 cGTTT-AGTT
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190757187  9 - 190850796 cGTGT-GGTC
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14127257 10 -  14256875 cATGTGGGTC
i saiBol1.JH378165         C 0 C 0
s panHod1.KE114653           1505888  9 -   2937107 TGTTT-AGTC
i panHod1.KE114653         I 1 C 0
s bosTau8.chr27             18221930  9 +  45407902 TGTTT-AGTC
i bosTau8.chr27            C 0 C 0
s oviAri3.chr26             17847995  9 +  44077779 TGTTT-AGTC
i oviAri3.chr26            I 1 C 0
s capHir1.chr27             17933360  9 +  44118849 TGTTT-AGTC
i capHir1.chr27            I 1 C 0
s felCat8.chrB1             20476942  9 + 206538554 TCCCT-ATTC
i felCat8.chrB1            C 0 C 0
s odoRosDiv1.KB229312         752406  9 -   2017862 TGCCT-AGTC
i odoRosDiv1.KB229312      C 0 C 0
e canFam3.chr16             18195175 57 -  59632846 I
e ornAna1.Contig22913           8772  0 +      9822 I
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637  0 -       895 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55059163  0 +  59856998 I
e anoCar2.chrUn_GL344195       36141 7270 +     59083 I
e pseHum1.KB221303            460951  0 -   1055857 I
e zonAlb1.KB913240            788825  0 -    852449 I
e colLiv1.KB375452           1391464  0 +   4234233 I
e allMis1.JH737334             63284  0 -    565068 I
e falPer1.KB390921           1613136  0 +   3698665 I
e falChe1.KB398121           1475198  0 +   3546035 I
e macEug2.GL053575             11374  0 +     74274 I
e galGal4.chrZ              23195869  3 -  82363669 I
e geoFor1.JH739942           1280732  0 +   5104860 I
e melGal1.chrZ              62956231  0 +  81011772 I
e anaPla1.KB742960            141378  0 +    531124 I
e amaVit1.KB238281               354  0 +      9836 I
e apaSpi1.KB928558           3295625  0 -   3719163 I
e cheMyd1.KB497515           3641299  0 +   9092468 I
e chrPic2.chrUn_KK082917v1  12457941  0 -  13974604 I
e pelSin1.JH211373           2650239  0 -   4257854 I
e melUnd1.JH556568           2080313  0 +   4296882 I
e monDom5.chr3             315955221  0 - 527952102 I
e taeGut2.chrZ              13217382  0 +  72861351 I
e equCab2.chr27             18747195  0 -  39960074 C
e orcOrc1.KB316932           3031292  0 -  10937097 C
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=150251.000000
s hg38.chr8_KI270814v1_alt     77071 63 +    141812 CAACACTCTATTTTACACAAGA------GGAAAGCAAACCATGTAT-------------CCAGTTGCAATGAAAGCTTACAT
s ponAbe2.chr8              59046643 63 + 153482349 CAACACTCTATTTTACACAAGA------GGAAAGCAAACCATGTAT-------------CCAGTTGCAATGAAAGCTTACAT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48120254 63 + 100215132 CAACACTCTATTTTACACAAGA------GGAAAGCAAACCATGTAT-------------CCAGTTGCAGTGAAAGCTTACAT
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190757196 61 - 190850796 CAACACTCTATTTTACATGAGG------GGAAGGCAAACCACATAC-------------ACAGATGCAATT--GTCTTAAAT
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14127267 61 -  14256875 CAACATTCTATTTTACATGAGG------AGAAAGCAAACCACATAC-------------ACAGATGCAATG--GTCTTAAAT
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3031292 75 -  10937097 caacacgatatttcatactaga------ggaaagtgaAATGTATATCCAGAAGCAAGATCCAAATTC-AAGATGGCTTGAAT
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1505897 75 -   2937107 CAGCTCTGTACTTGTCACTAGA------GGAAAGTGAAATGTATATCCAGAAATAAGACCCAAATTC-AAGATGGCTTGGAT
i panHod1.KE114653         C 0 C 0
s bosTau8.chr27             18221939 75 +  45407902 TAGCTCTGTACTTTTCACTAGA------GGAAAGTGAAATGTATATCCAGAAATAAGACCCAAATTC-AAGACGGCTTGGAT
i bosTau8.chr27            C 0 C 0
s oviAri3.chr26             17848004 75 +  44077779 CAGCTCTGTACTTGTCACTAGA------GGAAAGTGAAATGTATATCCAGAAATAAGACCCAAATTC-AAGACGGCTTGGAT
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17933369 75 +  44118849 CAGCTCTGTACTTGTCACTAGA------GGAAAGTGAAGTGTATATCCAGAAATCAGACCCAAATTC-AATATGGCTTGGAT
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18747195 63 -  39960074 caacactacattttacacaaaa------ggaaggtgaaatgtatgt-------------tcagatacagtgatggcttgAGT
i equCab2.chr27            C 0 C 0
s felCat8.chrB1             20476951 62 + 206538554 TATGACTATATTTTACACAAGA------GGAAAGTGGAATGTATG--------------TCAAATGCTGTGATGGCCTGAAT
i felCat8.chrB1            C 0 C 0
s odoRosDiv1.KB229312         752415 53 -   2017862 TTCCACTATATTTTACACTGTATTTTATATACACTGAAAGGTATG--------------TCAAATGC---------------
i odoRosDiv1.KB229312      C 0 C 0
e canFam3.chr16             18195175 57 -  59632846 I
e ornAna1.Contig22913           8772  0 +      9822 I
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637  0 -       895 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55059163  0 +  59856998 I
e anoCar2.chrUn_GL344195       36141 7270 +     59083 I
e pseHum1.KB221303            460951  0 -   1055857 I
e zonAlb1.KB913240            788825  0 -    852449 I
e colLiv1.KB375452           1391464  0 +   4234233 I
e allMis1.JH737334             63284  0 -    565068 I
e falPer1.KB390921           1613136  0 +   3698665 I
e falChe1.KB398121           1475198  0 +   3546035 I
e macEug2.GL053575             11374  0 +     74274 I
e galGal4.chrZ              23195869  3 -  82363669 I
e geoFor1.JH739942           1280732  0 +   5104860 I
e melGal1.chrZ              62956231  0 +  81011772 I
e anaPla1.KB742960            141378  0 +    531124 I
e amaVit1.KB238281               354  0 +      9836 I
e apaSpi1.KB928558           3295625  0 -   3719163 I
e cheMyd1.KB497515           3641299  0 +   9092468 I
e chrPic2.chrUn_KK082917v1  12457941  0 -  13974604 I
e pelSin1.JH211373           2650239  0 -   4257854 I
e melUnd1.JH556568           2080313  0 +   4296882 I
e monDom5.chr3             315955221  0 - 527952102 I
e taeGut2.chrZ              13217382  0 +  72861351 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=823634.000000
s hg38.chr8_KI270814v1_alt     77134 178 +    141812 AGACATCATGTATAGATTATATCCTAGGAAA-ACATGATTAA-GATGACACATAGTGACTTTTCTT------------------------------------------------------------------TTTCAGTGAAAGAGA-TCCACATCCTTTTTCTT-------------GTGTGGAACTAAACATGATTTCTGAGTTAATGTAGTTTAATGCAAATCACCATGATCACTTAACCCATGCTTCTTTATTAAA
s ponAbe2.chr8              59046706 178 + 153482349 AGACATCATGTATAGATTATATCTTAGGAAA-ACATGATTAA-GATGACACGTAGTGACTTTTCTT------------------------------------------------------------------TTTCAGTGAAAGAGA-TCCACATTCCTTTTCTT-------------GTGTGGAACTAAACATGATTTCTGAATTAATGTAGTTTAATGCAAATCACCATGATCACTTAACCCATGCTTCTTTATTAAA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48120317 178 + 100215132 AGACATCATGTATAGATTATATCCTAGGAAA-ACATGATTAA-GATGACACATAGTGACTTTTCTT------------------------------------------------------------------TTTCAGTGAAAGAGA-TCCACATTCTTTTTCTT-------------GTGTGAAACTAAACATGATTTCTGAATTAATGTAGTTTAATGCAAATCACCATGATCACTTAACCCATGCTTCTTTATTAAA
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190757257 183 - 190850796 AGACATCATGTATAGATTATATCCCAGGAAA-ACATGATTAA-GATGATACACAGTGACTTTTTTC-------------------------------------------------------------CCCCCCTCAAGTGAAAAAGA-TCCACATTCCTTTTCTT-------------GTGTGGAACTAAACACAATTTCTGAACCAATGTAAGTAAATACAAATCAGCATGTTCACTTAACTCATGCTCCTTTATTAAA
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14127328 244 -  14256875 AGACGGCATGTATAGATTACATCCCAGGAAA-AGATGACTAA-GATGATACACAGTGAGTTTTTTCAGCATTATTTTTTACATGGTAAAAAATGGTAAAGCATTCAGTATCATTAACTACATTCACACTTTTTTTGTGTGAAAAAGA-TCCACATTCCTTTTCTT-------------GTGTGGAACTAAACACAACTTCTGAATCAAGGTAAGTGAATACAAATCAGCATGTTCACTTAACTCATGCCCCTTTATTAAA
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3031367 193 -  10937097 AGACATCATATCTGTATTATGTCCTAGGAAAAACATGATCAA-TATGGAACATAGGGACATTTCTG------------------------------------------------------------------TTATAGAGAAGAGCATTCCACATTCTTTCTCTGGTGTAAGAAGCCAGTATGGAACTAATCAAGATTCCTGAATTAATGTAATTTAATGCAACTCAGCACCCTCACTTAAACCATGCTCCTTCATTAAA
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1505972 192 -   2937107 AGACATCATGTCTACATTACATGCAAGGAAACACATGATCAA-GGTAGCACATCGTGACAGCCCCA------------------------------------------------------------------TAAAAGAGAAGAGCA-TCCACATTCTTTCTCTGTCATTAGAAGCCAGTATGGAACTCCTCGGGATTCCTGAATTGGTGCAATTTAATGCAGCTCAGCAGCCTCTTTTAAACCATGCTCCTTCACTCAA
i panHod1.KE114653         C 0 C 0
s bosTau8.chr27             18222014 186 +  45407902 AGACATCATGTCTA------GTGCAAGGAAAAACATGATCAA-GATAGCACACAGTGACGTTTCCG------------------------------------------------------------------TAAAAGAGAAGAGCA-TCCACATTCTTTCTCTGGCATTAGAAGCCAGTATGGAACTCCTCAAGATTCCTGAATTGGTGCAATTTAATGCAGCTCAGCAGCCTCATTTAAACCATGCTCCTTCACTCAA
i bosTau8.chr27            C 0 C 0
s oviAri3.chr26             17848079 192 +  44077779 AGACATCATGTCTATATTACGTGCAAGGAAACGCATGATCAA-GGTAGCACATCGTGACAGCCCCA------------------------------------------------------------------TAAAAGAGAAGAGCA-TCCACATTCTTTCTCTGTCATTAGAAGCCAGTATGGAACTCCTCGGGATTCCTGAATTGGTGCAATTTAATGCAGCTCAGCAGCCCCTTTTAAACCATGCTCCTTCACTCAA
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17933444 192 +  44118849 AGACATCATGTCTATATTACGTGCAAGGAAACACATGATCAA-GGTAGCACATCGTGACAGCCCCA------------------------------------------------------------------TAAAAGAGAAGAGCA-TCCACATTCTTTCTCTGTCATTAGAAGCCAGTATGGAACTCCTCGGGATTCCTGAATTGGTGCAATTTAATGCAGCTCAGCAGCCTCTTTTAAACCATGCTCCTTCACTCAA
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18747258 190 -  39960074 AGACGTCATATATAGATTATGTCCTAGGAAA-ACACAATCAA-GACAGCACATAGTGACATTTCTG------------------------------------------------------------------TTACGGTGGAAGGCA-TCCACATTCTTTCTCTGGCATGGGAAGCCAG-ATGGAACTAATCATGTTTCCTGAATTAATGTAGCCTAATGCAGCTCAGCACCCTCACTTAAACTATGCTCTTTCATTCAA
i equCab2.chr27            C 0 C 0
s felCat8.chrB1             20477013 180 + 206538554 AGAAATCATATGTAGGTTGTGTCCTAGGAAA-ACATGATCCATGATGGCTCCTAGTGACATATCCA------------------------------------------------------------------TTACAG------TCA-TACCCCTTCTTTCTCTGGC------AGCCAATATGGTACAAATCATGATTCTTGAATTAATATAACTTAATACAGCTCAGCACCCTGACTTAAACCTTGCTTCTTCATTCAA
i felCat8.chrB1            C 0 C 0
s canFam3.chr16             18195232 191 -  59632846 AGACATCATATGTAGATTACATCCTAGAAAA-ACATGATCAA-GATTGCTCATAGTGACATTTCTG------------------------------------------------------------------TTACAGTGACAATCA-TCCTCATTCTTTCTCTGGTATTGGAAGCCAATATGGAACTAATCATGATTCCTGAATTAATGTAACTTAATATAACTCAGCACCCTCACTTAAAACTTGCTTCTTCATTCAA
i canFam3.chr16            I 57 C 0
s odoRosDiv1.KB229312         752468 191 -   2017862 TGACATCTTATGTAGATTATGTCCTAGGAAA-ACATGATCAA-GATGGCTCATAGCGACATTTCTG------------------------------------------------------------------TTACAGGAACAGTCA-TCACCATTCTTTCTCTGGCATTGGAAGCCAATATGGAGTTAATCACAATTCCTGAATTAATGTAACTTAATACAGCCCAGCACCCTCACTTAAAACTTGCTTCTTCATTCAA
i odoRosDiv1.KB229312      C 0 N 0
e ornAna1.Contig22913           8772   0 +      9822 I
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637   0 -       895 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55059163   0 +  59856998 I
e anoCar2.chrUn_GL344195       36141 7270 +     59083 I
e pseHum1.KB221303            460951   0 -   1055857 I
e zonAlb1.KB913240            788825   0 -    852449 I
e colLiv1.KB375452           1391464   0 +   4234233 I
e allMis1.JH737334             63284   0 -    565068 I
e falPer1.KB390921           1613136   0 +   3698665 I
e falChe1.KB398121           1475198   0 +   3546035 I
e macEug2.GL053575             11374   0 +     74274 I
e galGal4.chrZ              23195869   3 -  82363669 I
e geoFor1.JH739942           1280732   0 +   5104860 I
e melGal1.chrZ              62956231   0 +  81011772 I
e anaPla1.KB742960            141378   0 +    531124 I
e amaVit1.KB238281               354   0 +      9836 I
e apaSpi1.KB928558           3295625   0 -   3719163 I
e cheMyd1.KB497515           3641299   0 +   9092468 I
e chrPic2.chrUn_KK082917v1  12457941   0 -  13974604 I
e pelSin1.JH211373           2650239   0 -   4257854 I
e melUnd1.JH556568           2080313   0 +   4296882 I
e monDom5.chr3             315955221   0 - 527952102 I
e taeGut2.chrZ              13217382   0 +  72861351 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=817044.000000
s hg38.chr8_KI270814v1_alt     77312 238 +    141812 GGAGGTAGAAGGGATGTGATTTGATGGGAGGATGGCCCGGGATCCAGGACC------TGGGAAAGATGCAATGAGTAAAGGGGAGCAACAGAAAAGTAGGGAATAAAGTAAGCGTGA-AGAGTCATCAACTTCCCTCACTGCTCCTGGCCTCTGGCATTGGAAGCCCAGAGGTCTTTTCTAGGGCCTCAGAGAAGCTTCCAG-GTCTGTTCA-TTTCTTTTTCCCCACCCCTGCTTGTATCACAAAT
s ponAbe2.chr8              59046884 238 + 153482349 GGAGGTAGAAGGGAGGTGATTTGATGGGAGGATGGCCCGGGATCCAAGACC------TGGGAAAGATGCAATGAGTAAAGGGGAGAAACAGAAAAGTAGGGAATAAAGTAAGAGTGA-AGAGTCATCAACTTCCCTCACTGCTCCTGGCCTCTGGCATTAGAAGCCCAGAGGTCTTTTCTAGGGCCTCAGAGAAGCTTCCAG-GTCTGTTCA-TTTCTCTTTCCCCACCCCTGCTTGTATCACAAAT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48120495 238 + 100215132 GGAGGTAGAAGGGAGGTGATATGATGGGAGGATGGCCCGGGATCCAGGACC------TGGGAAAGATGCAATGAGTAAAGGGGAGAAACAGAAAAGTAGGGAATAAAGTAAGAGTGA-AGAGTCATCAGCTTCCCTCACTGCTCCTGGCCTCTGGCATTAGAAGCCCAGAGGTCTTTTCTAGGGCCTCAGAGAAGCTTCCAG-GTCTGTTCA-TTTCTCTTTCCCCACCCCTGCTTGTATCACAAAT
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190757440 237 - 190850796 GGGGATAGAAGGGAAGTGTCTCAAAGAGATGATAGCCTGGGACCCAGGACC------TGGGGAAGCTGCAGTG-GTGAAGGGGAGAAACAGGGGGGCAGGTGCTGGACAAAGAGTTG-GGAGTCATCAACTCCCCTCCCTGCTCCTGTCCTCTGTTGTTTGGAGCCCAGAGGTCTTCTCTAGGGCCTCAGAGAAGCTTCTAA-GTCCATTCA-TTTCTCTTTCCCCACCCCTGCTTGTAGCATAAAT
i calJac3.chr3             C 0 I 4
s saiBol1.JH378165          14127572 237 -  14256875 GGGGATAGAAGGGAGGTGTTTCAAAGAGATGATGGCCCGGGACCCAGGACC------TGGGGAAGCTGCAGTG-GTGAAGGGGAGAAACAGGGGAGCAGGGGCTGGAAAAACAGTTG-GGAGTCATCAACTCCCCTCCCTGCTCCTGCCCTCTGTTGTTTGGAGCCCAGAGGTCTTCTCTAGGGCCTCAGAGAAGCTTCCAA-GTCTGTTCA-TTTCTCTTTCCCCATCCCTTCTTGTAGTACAAAT
i saiBol1.JH378165         C 0 I 333
s orcOrc1.KB316932           3031560 236 -  10937097 GTGGGTGGAAGGTAGATGACTGAAGTGGAGGATGGTTAAGCATCC-GGACCCC----AGGGGAAGCTGCAGGGGGCAAAGGGGAGAAACAGAATAGTAGAGG-TGGAGAAAGGATGT-GAAGCCATCAATTTCCCTCACTGCTCCTGGCCGCTGGAGTTATGAGCCT-GAGATCTTC-ACTGGGCCTCAGAGTAGCTTCTGG-CTCTATTCA-TTACTCTTTCCCCATCCCCAGCTTTAGCAAAAAT
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1506164 217 -   2937107 AGGGGTGGAGGG-AGATGATTAGGACTGAGGATGGCTCAGGACCC-GGACCCC----AGGGGAAGCCGCAGGAGGCAACAGGGAGAAACAAAGTTGTAGAGG-CCAAGAAAGGATGT-AAAG-AATTGATTTCCCTCACCACTCCCGGCCCCTGGAGTTAAGGGCCT-------------------CTGGAGTAGCTTCAGG-CTCTGTTCA-TTACTCTTTTCCCCTCCCCAGCTTTAGCAAACAC
i panHod1.KE114653         C 0 C 0
s bosTau8.chr27             18222200 217 +  45407902 AGGGGTGGAGGG-AGATGATTAGGACTGAGGATGGCTGAGGACCT-GGACCCC----AGGGGAAGCCGCAGTGGGCAACAGGGAGAAACAAAGTTGTAGAGG-CCAAGAAAGGATGT-GAAG-AATTGATTTCCCTCACCACTTCTGGCCCCTGAAGTTAGGGGCCT-------------------TTGGAGTAGCTTCAGG-CTCTGTTCT-TTACTCTTTCCCCATTCCCAGCTTTAGCAAACAC
i bosTau8.chr27            C 0 C 0
s oviAri3.chr26             17848271 218 +  44077779 AGGGGTGGAGGG-AGATGATTAGGACTGAGGATGGCTCAGGACCC-GGACCCC----AGGGGAAGCCGCAGGGGGCAACAGGGAGAAACAAAGTTGTAGAGG-CCAATAAAGGATGT-AAAG-AATTGATTTCCCTCACCACTCCCAGCCCCTGGAGTTAAGGGCCT-------------------CTGGAGTAGCTTCAGG-CTCTATTCATTTACTCTTTTCCCATCCCCAGCTTTAGCAAACAC
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17933636 217 +  44118849 AGGGGTGGAGGG-AGATGATTAGGACTGAGGATGGCTCAGGACCC-GGACCCC----AGGGGAAGCCGCAGGGGGCAACAGGGAGAAACAAAGTTGTAGAGG-CCAAGAAAGGATGT-AAAG-AATTGATTTCCCTCACCACTCCCGGCCCCTGGAGTTAAGGGCCT-------------------CTGGAGTAGCTTCAGG-CTCTGTTCA-TTACTCTTTTCCCATCCCCAGCTTTAGCAAACAC
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18747448 243 -  39960074 GGGGTTGGAAAGTAGATGATTAGAACTGAGGATGACTCAGGACCCAGGACCTCCTGCAGGGGAAGCTGCAGGGGGCAAAGGAGAAAAACAGAGTAGTAGAGA-TGGAGAAAGAATGT-GAAGCCATCAATTTCCCTCTCTGCTCCTGGCCCCTGGAGTTGTGAGCCAAGAGGTCTTCTATCAGGTGTCTGAGTAGCTTCTGG-CTCTGTTCA-TTTCTCTTTCCCCATCCCTCGCTTTATCACAGAT
i equCab2.chr27            C 0 C 0
s felCat8.chrB1             20477193 239 + 206538554 -GAGGTAGAAGGTAGATGATTAGAATTGAGGATGGCTCAGGACCGAGGACTGC----AGGGGAAGCTGCAGGGGACAAAGGGGAGAATAGAAGCAATAAAGG-AGAAGAAAGAACATAAAAACCATCAATTTCCCTCACTGCATCTGGCCCTTGGAGTTACGAGCCCAGAGGTCTTTTATAAGGTCTTGAAGTAGCTTCTGGCCTCTCTTCA-TTACTCTTTCCCCA-CCATAGATTTAGTACAAAT
i felCat8.chrB1            C 0 C 0
s canFam3.chr16             18195423 238 -  59632846 -GGAGTAGAAGGCAGATGATTAGAACTGAGGATGGTTCAAGAGCCATGATCCC---GGGGGGAAGCTACAGGGGGCAACAAGGAGAAAAGGAGGAATAAAGG-GGGAGAAAGAATAT-AAAACCATCAATTTCCCTCATTGCTCCTGGCCCTTGGAGTTATGACCCCAGAGGTCTTTTATAGGACCTTGATCTAGCTTCTGG-GTGTCTTCA-TAACTGTTTCTCCA-CCCTAACTTTAGCACAAAT
i canFam3.chr16            C 0 C 0
e ornAna1.Contig22913           8772   0 +      9822 I
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637   0 -       895 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55059163   0 +  59856998 I
e anoCar2.chrUn_GL344195       36141 7270 +     59083 I
e pseHum1.KB221303            460951   0 -   1055857 I
e zonAlb1.KB913240            788825   0 -    852449 I
e colLiv1.KB375452           1391464   0 +   4234233 I
e allMis1.JH737334             63284   0 -    565068 I
e falPer1.KB390921           1613136   0 +   3698665 I
e falChe1.KB398121           1475198   0 +   3546035 I
e macEug2.GL053575             11374   0 +     74274 I
e galGal4.chrZ              23195869   3 -  82363669 I
e geoFor1.JH739942           1280732   0 +   5104860 I
e melGal1.chrZ              62956231   0 +  81011772 I
e anaPla1.KB742960            141378   0 +    531124 I
e amaVit1.KB238281               354   0 +      9836 I
e apaSpi1.KB928558           3295625   0 -   3719163 I
e cheMyd1.KB497515           3641299   0 +   9092468 I
e chrPic2.chrUn_KK082917v1  12457941   0 -  13974604 I
e pelSin1.JH211373           2650239   0 -   4257854 I
e melUnd1.JH556568           2080313   0 +   4296882 I
e monDom5.chr3             315955221   0 - 527952102 I
e taeGut2.chrZ              13217382   0 +  72861351 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=147893.000000
s hg38.chr8_KI270814v1_alt     77550 58 +    141812 ----AAATTACTGACACCTAAATTTCTGACTAGGTGGTAGAATTTTAGGGATCCTTCA----CCTC
s ponAbe2.chr8              59047122 58 + 153482349 ----AAATTACTGACACCTAAATTTCTGACTAGGTGGTAGAATTTTAGGGATCCTTCA----CCTC
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48120733 58 + 100215132 ----AAATTACTTACACCTAAATTTCTGACTAGGTGGTAGAATTTTAGGGATCCTTCA----CCTC
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190757681 52 - 190850796 ----AAATTATTGACATCTGAGTTCCTGACTATGTGGCAGGATTCTAGGGAC----------CCTT
i calJac3.chr3             I 4 C 0
s saiBol1.JH378165          14128142 58 -  14256875 ----AAATTACTGACACCTGAGTTCCTGACTAGGTGGCAGGATTCTAGGGACACTTCA----CCTC
i saiBol1.JH378165         I 333 C 0
s orcOrc1.KB316932           3031796 58 -  10937097 AAAGACATTTTTGACATACAAATGCCTGACTGAATGGTGGGATTTTAGGGATCCTCCA--------
i orcOrc1.KB316932         C 0 I 2
s panHod1.KE114653           1506381 56 -   2937107 AGAGATATTTTTGGCTGACAAATA-CTGA-TGACTGGTGAGATTTTAGGGGTCCTCTC--------
i panHod1.KE114653         C 0 C 0
s bosTau8.chr27             18222417 57 +  45407902 AGAGATATTTTTGACTGACAAATACCTGA-TGATTGGTGAGATTTTAGGGGTCCTCTC--------
i bosTau8.chr27            C 0 N 0
s oviAri3.chr26             17848489 57 +  44077779 AGAGATATTTTTGGCTGACAAATACCTGA-TGACTGGTGAGATTTGAGGGGTCCTCTC--------
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17933853 56 +  44118849 AGAGATAGTTTTGGCTTACAAATA-CTGA-TGACTGGTGAGATTTTACGGGTCCTCTC--------
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18747691 57 -  39960074 AAAGAAACTTTTAACATACAAATGCCTGCCTGGGTGGTAGGACTTTAGGGATCCTTC---------
i equCab2.chr27            C 0 C 0
s felCat8.chrB1             20477432 62 + 206538554 AAATAAATTTTTGACATACAGATGCATGAGTAGGTGGTAGGATTTTAGGGATCCTTCAACCA----
i felCat8.chrB1            C 0 C 0
s canFam3.chr16             18195661 62 -  59632846 AAAGAGATTTTTGACATATGAATGCCTGGCTGAGTGATAGCTTTTTAGGAATCCTTCACCCA----
i canFam3.chr16            C 0 C 0
e ornAna1.Contig22913           8772  0 +      9822 I
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637  0 -       895 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55059163  0 +  59856998 I
e anoCar2.chrUn_GL344195       36141 7270 +     59083 I
e pseHum1.KB221303            460951  0 -   1055857 I
e zonAlb1.KB913240            788825  0 -    852449 I
e colLiv1.KB375452           1391464  0 +   4234233 I
e allMis1.JH737334             63284  0 -    565068 I
e falPer1.KB390921           1613136  0 +   3698665 I
e falChe1.KB398121           1475198  0 +   3546035 I
e macEug2.GL053575             11374  0 +     74274 I
e galGal4.chrZ              23195869  3 -  82363669 I
e geoFor1.JH739942           1280732  0 +   5104860 I
e melGal1.chrZ              62956231  0 +  81011772 I
e anaPla1.KB742960            141378  0 +    531124 I
e amaVit1.KB238281               354  0 +      9836 I
e apaSpi1.KB928558           3295625  0 -   3719163 I
e cheMyd1.KB497515           3641299  0 +   9092468 I
e chrPic2.chrUn_KK082917v1  12457941  0 -  13974604 I
e pelSin1.JH211373           2650239  0 -   4257854 I
e melUnd1.JH556568           2080313  0 +   4296882 I
e monDom5.chr3             315955221  0 - 527952102 I
e taeGut2.chrZ              13217382  0 +  72861351 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=118089.000000
s hg38.chr8_KI270814v1_alt     77608 63 +    141812 ATCAGAATTCCATGTAAGTTGTGGGAGTCATATGGGTTAAGTAAGCAATAGTCCTTGAGATT-A
s ponAbe2.chr8              59047180 63 + 153482349 GTCAGAATTCCATGTAGGCTGTGGGAGTTATATGGGTTAAGTAAGCAATAGTCCTTGAGATT-A
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48120791 63 + 100215132 TTCAGAATTCCACGTAGGTTGTGGGAGTCATATGGGTTAAGTAAGCAATAGTCCTTGAGATT-A
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190757733 60 - 190850796 ATCAGGATTTCGGGTGGGTGGTGGGAGTCCCAT--GTT-AGTTAACAATAGTCCTAGAGATT-A
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14128200 62 -  14256875 ATCAGAATTTCACATAGGTAGTGGGAGTCCCATGGGTT-AGTTAGCAATAGTCCTAGAGATT-A
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3031856 45 -  10937097 -----------------CTCCAGGGAGTCATATGGGTT-AATAGCCAATAATCCTGGAGATT-A
i orcOrc1.KB316932         I 2 C 0
s panHod1.KE114653           1506437 46 -   2937107 ---------------ATCTCTAGGGAGTCCTAT-GGTT-AATAACCAATAATCTTGGAGATT-A
i panHod1.KE114653         C 0 I 240
s oviAri3.chr26             17848546 47 +  44077779 ---------------ATCTCTAGGGAGTCCTATGGGTT-AATAACCAGTAATCTTGGAGATT-A
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17933909 47 +  44118849 ---------------ATCTCTAGGGAGTCCTATGGGTC-AATAACCAATAATCTTGGAGATT-A
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18747748 52 -  39960074 -----AGTTCCA---CTCTCTAGGGAGTTA-AAGGGTT-AATAACCAGTAATCTTTGAGATT--
i equCab2.chr27            C 0 C 0
s felCat8.chrB1             20477494 58 + 206538554 GTCTAAATTCTA---TTTTCTATGGAGTCATATGGATT-AATAACCAGTGATCTTTGACATT--
i felCat8.chrB1            C 0 C 0
s canFam3.chr16             18195723 59 -  59632846 GTCTAAATTCTA---CTTTCTAGGGAGTGATATGGATT-AATAACCAGGGATCCTTGAGATTA-
i canFam3.chr16            C 0 C 0
e ornAna1.Contig22913           8772  0 +      9822 I
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637  0 -       895 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55059163  0 +  59856998 I
e anoCar2.chrUn_GL344195       36141 7270 +     59083 I
e pseHum1.KB221303            460951  0 -   1055857 I
e zonAlb1.KB913240            788825  0 -    852449 I
e colLiv1.KB375452           1391464  0 +   4234233 I
e allMis1.JH737334             63284  0 -    565068 I
e falPer1.KB390921           1613136  0 +   3698665 I
e falChe1.KB398121           1475198  0 +   3546035 I
e macEug2.GL053575             11374  0 +     74274 I
e galGal4.chrZ              23195869  3 -  82363669 I
e geoFor1.JH739942           1280732  0 +   5104860 I
e melGal1.chrZ              62956231  0 +  81011772 I
e anaPla1.KB742960            141378  0 +    531124 I
e amaVit1.KB238281               354  0 +      9836 I
e apaSpi1.KB928558           3295625  0 -   3719163 I
e cheMyd1.KB497515           3641299  0 +   9092468 I
e chrPic2.chrUn_KK082917v1  12457941  0 -  13974604 I
e pelSin1.JH211373           2650239  0 -   4257854 I
e melUnd1.JH556568           2080313  0 +   4296882 I
e monDom5.chr3             315955221  0 - 527952102 I
e taeGut2.chrZ              13217382  0 +  72861351 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=3785.000000
s hg38.chr8_KI270814v1_alt     77671 1 +    141812 T
s ponAbe2.chr8              59047243 1 + 153482349 T
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48120854 1 + 100215132 T
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190757793 1 - 190850796 T
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14128262 1 -  14256875 T
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3031901 1 -  10937097 T
i orcOrc1.KB316932         C 0 C 0
s oviAri3.chr26             17848593 1 +  44077779 T
i oviAri3.chr26            C 0 I 243
s capHir1.chr27             17933956 1 +  44118849 T
i capHir1.chr27            C 0 I 223
s equCab2.chr27             18747800 1 -  39960074 C
i equCab2.chr27            C 0 C 0
s felCat8.chrB1             20477552 1 + 206538554 T
i felCat8.chrB1            C 0 C 0
s canFam3.chr16             18195782 1 -  59632846 T
i canFam3.chr16            C 0 C 0
e panHod1.KE114653           1506483 240 -   2937107 I
e ornAna1.Contig22913           8772 0 +      9822 I
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637 0 -       895 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55059163 0 +  59856998 I
e anoCar2.chrUn_GL344195       36141 7270 +     59083 I
e pseHum1.KB221303            460951 0 -   1055857 I
e zonAlb1.KB913240            788825 0 -    852449 I
e colLiv1.KB375452           1391464 0 +   4234233 I
e allMis1.JH737334             63284 0 -    565068 I
e falPer1.KB390921           1613136 0 +   3698665 I
e falChe1.KB398121           1475198 0 +   3546035 I
e macEug2.GL053575             11374 0 +     74274 I
e galGal4.chrZ              23195869 3 -  82363669 I
e geoFor1.JH739942           1280732 0 +   5104860 I
e melGal1.chrZ              62956231 0 +  81011772 I
e anaPla1.KB742960            141378 0 +    531124 I
e amaVit1.KB238281               354 0 +      9836 I
e apaSpi1.KB928558           3295625 0 -   3719163 I
e cheMyd1.KB497515           3641299 0 +   9092468 I
e chrPic2.chrUn_KK082917v1  12457941 0 -  13974604 I
e pelSin1.JH211373           2650239 0 -   4257854 I
e melUnd1.JH556568           2080313 0 +   4296882 I
e monDom5.chr3             315955221 0 - 527952102 I
e taeGut2.chrZ              13217382 0 +  72861351 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=280727.000000
s hg38.chr8_KI270814v1_alt     77672 293 +    141812 TTGATCATATAAATCATCAGAAAATGTTTAGTCATCTTGATTTTATCATAATGTGTAGCTAGGGGAGGCTGGAGGGAGAGGACTGGAGTGAGAAGAGACAGCAAAAGAGGTGGCTTTTATGCATGGGGCTC-TATGAAGT-AATCAGGC----CTAAGT--GGAACCGAGAGGGACCTTGGAGCAGTTCTGGAGAGGAAAGCTTG-GGGCAC---AAGTCGTCTG--TTGATGGTGAGGCTTAGGCCCTGGC----------TCCAACCAATCACATCATC-TTTCTGACTGGGATGCCTAAGCAGTGTGTTT---TTTGT
s ponAbe2.chr8              59047244 293 + 153482349 TTGATGATATAAATCATCAGAAAATTTTTAGTCATCTTGATTTTCTCATAATGTGTAGCTAGGGGAGGCTGGAGGGAGAGAACTGGAGTGAGAAGAGATAGCAAAAGAAGTGGCTTTTATGCATGGGGCTG-TATGAAGT-AATCAGGC----CTAAGT--GGAACTGAGAGGGACCTTGGAGCAGTTCTGGAGAGGAAAGCTTA-GGGCAC---AGATTGCCTG--TTGATGGTGAGGCGTAGGCCCTGGC----------TCAAAGCAATCACATCATC-TTTCTGACTGGGATGCCTAAGCAGTGTGTTT---TTTGT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48120855 289 + 100215132 TTGATCATATAAATCATCAGAAAATTTTTAGTCATCTTGACTTTCTCATAATGTGTAGCTAGGGGAGGCTGCAGGGAGAGGACTGGAGTGAGAAGAGACAGAAAAAGAGGTGGCTTTTATGCATGGGGCTC-TATGAAGT-AATCAGGC----CTAAGT--GGAACCGAGGGGGACCTTGGAGAAGTTCTGGAGAGGAAAGTTTG-GGGCAC---AGGTCGCCTG--CTGATGGTGAGGCTTAGGCCCTGGC----------TCAAACCAATCACATCATC-TTTCTGACTGGGATGCCTAAGCAGGGTGTTT-------T
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190757794 245 - 190850796 TTGGTTATATAAATAATCAGAACAGTTTTA--CATCTTGCTTTTCTATTAATGCCCAGCTGAGGGATGGTGGGAGCAGAGGAATGGAGTGAGAAGAGACCGAACCAGAGCTGGCTTTCATGCGTGGGGCTT-TCCAGAGC-AATCAGGCCTAACTAAGT--ACAAGCAAGAGGGGTCTTGAAGCTGCTCTGGCAAG---------------------------------------------------------------------AACCAATCACATCACC-TGTCCGACTGGGAAGCCTAAGCTATGCGTTTTTGTTTAT
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14128263 231 -  14256875 TTGGTTATTTAAATAAACAGAACAGTTTTA--CATCTTGCTTTTCTCATAATGCCCAGCTGAGAGACGGTGGGAGCAGAGGAATG----GAGAAGAGACAGAACCAGAGCTGGCTTTCATGTGTGGGGCTT-TCCAGAGC-AATCAGGC----CTAAGT--ACAACCAAGAGGGG--TTGAAGCAGCTCTCACAGG---------------------------------------------------------------------AACCAATCCCGTCACC-TGTCTGACTGGGAAGCCTAAGCGATGTGTT----TTTAT
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3031902 255 -  10937097 TTGGTATCCTA------CAGCAA----------ATTTTGATTTTCTCTTAATGCCTAGCT----GAGGT---AGGTAGAGGGTTGAAGTGAGAAGAGGAAGAAACAGAGCTGGCTTTGATGCGTGGAGCTCTTCAGAAGC-AATCAGGC----ATAAACTGGAAACCAAGAGGGATTTTGGAACAGCTCTG-AAATGACAGCTTGAAAGCAGAAGAAAGTACCTGG-GGGACACTGATGCCCAAGACTCAGC----------------------------------TGGTAGTGGAGCCCAAGCAATGTGTTAAAtttt--
i orcOrc1.KB316932         C 0 I 31
s equCab2.chr27             18747801 278 -  39960074 TTTGT-----------------AAATTTTAGTCATCTTGATTTTCTCCTAACATCCAGCT----GAGGTTGAGGGTAGAGAGTTGAAGTGAGAAGAGGAAGAAGCAGGGCTGGCTTGC-TGCATGGAGCTCTTTAGAAGC-AATCAGGC----CAAAGCTGGAAATCAAGAGAGATTTTGCAACAGCTCTGAAAAGGACAGTGTTAAAGGAG---AGGGTGCCTGA-GGGACActgaggcccaggccctagc----------cccaaccaatcatgtcaacatgtctgatagtggagcccaagcaacatatcttatttt--
i equCab2.chr27            C 0 I 31
s felCat8.chrB1             20477553 288 + 206538554 TTGGTAGCCTA------CAGCAAAGTTTTAGTTATCTTGGTTTTCTCCTAGCTCCTAACT----AAGGTTGAGTGTAGAGGGTTGAAGTGATAAGAGGAAGAAGCATTCCTGGATTTCATGTATGGACTTC-TTAGGAGTTCTTCAGGC----CTGAGTTGGGAACCAAGAGGGATCCTAGAATGGTGCTGAAAAGGACAGACTGAAAGCAG-----AGTGcctgg-ggaacacaaatgaccaggttccacc----------ccaaatcaatcattaaagtgtatctgatagtggagcccaagcaATGTGTTTAACTGT--
i felCat8.chrB1            C 0 I 22
s canFam3.chr16             18195783 301 -  59632846 TTGGTACCCTA------CAGCAAATTTTTAGTCATCTTGATTTTCTCCTAACACCTAGCT----GAAGTTAAGGGTAGAGGGCTGAAGAGGGAAAAGGAAAAAGCATTGCTGGCTTTCATGCACAGAGATCGGCAGCAGCTCTTCAGGC----CTAAGTT-GGAACAAAGAGGGATCCTAGAATAGTGCGGAAAATGACAGCCTGAAAGCAG---ACAGCACCTGGAGGGATACTAATGGCCACGCTCTACCAAACCAATCTACAAACCAGTCATTACAGCATGTCGGATAGTGGAATCCAAGCAACATGtttaattgt--
i canFam3.chr16            C 0 I 27
e oviAri3.chr26             17848594 243 +  44077779 I
e panHod1.KE114653           1506483 240 -   2937107 I
e capHir1.chr27             17933957 223 +  44118849 I
e ornAna1.Contig22913           8772   0 +      9822 I
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637   0 -       895 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55059163   0 +  59856998 I
e anoCar2.chrUn_GL344195       36141 7270 +     59083 I
e pseHum1.KB221303            460951   0 -   1055857 I
e zonAlb1.KB913240            788825   0 -    852449 I
e colLiv1.KB375452           1391464   0 +   4234233 I
e allMis1.JH737334             63284   0 -    565068 I
e falPer1.KB390921           1613136   0 +   3698665 I
e falChe1.KB398121           1475198   0 +   3546035 I
e macEug2.GL053575             11374   0 +     74274 I
e galGal4.chrZ              23195869   3 -  82363669 I
e geoFor1.JH739942           1280732   0 +   5104860 I
e melGal1.chrZ              62956231   0 +  81011772 I
e anaPla1.KB742960            141378   0 +    531124 I
e amaVit1.KB238281               354   0 +      9836 I
e apaSpi1.KB928558           3295625   0 -   3719163 I
e cheMyd1.KB497515           3641299   0 +   9092468 I
e chrPic2.chrUn_KK082917v1  12457941   0 -  13974604 I
e pelSin1.JH211373           2650239   0 -   4257854 I
e melUnd1.JH556568           2080313   0 +   4296882 I
e monDom5.chr3             315955221   0 - 527952102 I
e taeGut2.chrZ              13217382   0 +  72861351 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=-385.000000
s hg38.chr8_KI270814v1_alt     77965 19 +    141812 TTGTTTTAGTGTTTGTTTT-
s ponAbe2.chr8              59047537 19 + 153482349 TTGTTTTAGTGTTTGTTTT-
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48121144 19 + 100215132 TTGTTTTAGTGTTTGTTTT-
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190758039 14 - 190850796 TTGTTTTGTTG-----TTT-
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14128494 14 -  14256875 TTGTTTTGTTG-----GTT-
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3032188 16 -  10937097 tcattttaacca----tttg
i orcOrc1.KB316932         I 31 C 0
s capHir1.chr27             17934180 16 +  44118849 ccattctaacca----cttg
i capHir1.chr27            I 223 C 0
s equCab2.chr27             18748110 16 -  39960074 ccattttaagca----tttg
i equCab2.chr27            I 31 C 0
s felCat8.chrB1             20477863 17 + 206538554 ccatcttaaccct---tttt
i felCat8.chrB1            I 22 C 0
s canFam3.chr16             18196111 16 -  59632846 ccattttaatca----tttg
i canFam3.chr16            I 27 C 0
e oviAri3.chr26             17848594 243 +  44077779 I
e panHod1.KE114653           1506483 240 -   2937107 I
e ornAna1.Contig22913           8772  0 +      9822 I
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637  0 -       895 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55059163  0 +  59856998 I
e anoCar2.chrUn_GL344195       36141 7270 +     59083 I
e pseHum1.KB221303            460951  0 -   1055857 I
e zonAlb1.KB913240            788825  0 -    852449 I
e colLiv1.KB375452           1391464  0 +   4234233 I
e allMis1.JH737334             63284  0 -    565068 I
e falPer1.KB390921           1613136  0 +   3698665 I
e falChe1.KB398121           1475198  0 +   3546035 I
e macEug2.GL053575             11374  0 +     74274 I
e galGal4.chrZ              23195869  3 -  82363669 I
e geoFor1.JH739942           1280732  0 +   5104860 I
e melGal1.chrZ              62956231  0 +  81011772 I
e anaPla1.KB742960            141378  0 +    531124 I
e amaVit1.KB238281               354  0 +      9836 I
e apaSpi1.KB928558           3295625  0 -   3719163 I
e cheMyd1.KB497515           3641299  0 +   9092468 I
e chrPic2.chrUn_KK082917v1  12457941  0 -  13974604 I
e pelSin1.JH211373           2650239  0 -   4257854 I
e melUnd1.JH556568           2080313  0 +   4296882 I
e monDom5.chr3             315955221  0 - 527952102 I
e taeGut2.chrZ              13217382  0 +  72861351 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=283010.000000
s hg38.chr8_KI270814v1_alt     77984 78 +    141812 TTGGTAAAGCatacagtggcattaactaaattcacagtgttgtgcactcatcaccaccatccatttccagaacttttc--
s ponAbe2.chr8              59047556 78 + 153482349 TTGGTAAAGCatacagtggcattaactaaattcacagtgttgtgcactcatcaccaccatccatttccagaacttttc--
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48121163 78 + 100215132 TTGGTAAAGCATAcagtggcattaactaaattcacagtgttgtgcactcatcaccaccatccatttccggaacttttc--
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190758053 77 - 190850796 TTGGTAAAGCattcagtatcattaactacagccacactgctgtgcaatcatcacctctatccatttccagagcttc-c--
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14128508 76 -  14256875 TTGGTAAAGCattcagaatcattaactacagtcacactgctgtgcaatcatcaccactatccatttccagagcttc----
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3032204 78 -  10937097 taagtgaatatttcggtggcattaagtgcattcaaaacgctttgcaaccatcaccactatccacctccagaactcttt--
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1506723 77 -   2937107 caagtgaacaattcagtggcattaagtgcattc-aaatgctttgcaaccatcaccaccatccatcttcagaacttttc--
i panHod1.KE114653         I 240 C 0
s oviAri3.chr26             17848837 77 +  44077779 taagtgaacaattcagtggcattaagcgcattc-aaatgctttgcaaccatcaccaccatccatcttcagaacttttc--
i oviAri3.chr26            I 243 C 0
s capHir1.chr27             17934196 77 +  44118849 caagtgaacaattcagtggcattaagtgcattc-aaatgctttgtaaccatcaccaccatccatcttcagaacttttc--
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18748126 78 -  39960074 taagtgcacaattcagcggcattaagtacattcacaatgttgtgcaaccatcaccaccatccatctccagaacgtttt--
i equCab2.chr27            C 0 C 0
s felCat8.chrB1             20477880 79 + 206538554 taagtgaacaactcagtggca-taagtacattcacaatgctgtgcagccatcaccgccatccaactctgggacttttttc
i felCat8.chrB1            C 0 C 0
s canFam3.chr16             18196127 76 -  59632846 taagtgaacaattcagtggcattaagtacattcacattgctgtgcaatcatcaccaccatccaactccaagacttt----
i canFam3.chr16            C 0 C 0
e ornAna1.Contig22913           8772  0 +      9822 I
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637  0 -       895 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55059163  0 +  59856998 I
e anoCar2.chrUn_GL344195       36141 7270 +     59083 I
e pseHum1.KB221303            460951  0 -   1055857 I
e zonAlb1.KB913240            788825  0 -    852449 I
e colLiv1.KB375452           1391464  0 +   4234233 I
e allMis1.JH737334             63284  0 -    565068 I
e falPer1.KB390921           1613136  0 +   3698665 I
e falChe1.KB398121           1475198  0 +   3546035 I
e macEug2.GL053575             11374  0 +     74274 I
e galGal4.chrZ              23195869  3 -  82363669 I
e geoFor1.JH739942           1280732  0 +   5104860 I
e melGal1.chrZ              62956231  0 +  81011772 I
e anaPla1.KB742960            141378  0 +    531124 I
e amaVit1.KB238281               354  0 +      9836 I
e apaSpi1.KB928558           3295625  0 -   3719163 I
e cheMyd1.KB497515           3641299  0 +   9092468 I
e chrPic2.chrUn_KK082917v1  12457941  0 -  13974604 I
e pelSin1.JH211373           2650239  0 -   4257854 I
e melUnd1.JH556568           2080313  0 +   4296882 I
e monDom5.chr3             315955221  0 - 527952102 I
e taeGut2.chrZ              13217382  0 +  72861351 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=111556.000000
s hg38.chr8_KI270814v1_alt     78062 33 +    141812 catcatgccaaacagaaa----ctctgtgcccatgaa---
s ponAbe2.chr8              59047634 33 + 153482349 catcatgccaaacagaaa----ctctgtgcccatgaa---
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48121241 33 + 100215132 catcatgccaaatagaaa----ccctgtgcccatgaa---
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190758130 33 - 190850796 tatcactccagacaggaa----ctctgtgtccattaa---
i calJac3.chr3             C 0 C 0
s saiBol1.JH378165          14128584 30 -  14256875 ---caccccagacaggaa----ccctgtgcccattaa---
i saiBol1.JH378165         C 0 C 0
s orcOrc1.KB316932           3032282 33 -  10937097 catcgtgccaaatagaga----ccctgtacccattaa---
i orcOrc1.KB316932         C 0 C 0
s panHod1.KE114653           1506800 32 -   2937107 cattatcccaaatagaaa----ccctat-cccattaa---
i panHod1.KE114653         C 0 C 0
s oviAri3.chr26             17848914 32 +  44077779 cattatcccaaatagaaa----ccctat-cccattaa---
i oviAri3.chr26            C 0 C 0
s capHir1.chr27             17934273 32 +  44118849 cattatcccaagtagaaa----ccctat-cccactaa---
i capHir1.chr27            C 0 C 0
s equCab2.chr27             18748204 33 -  39960074 catcattacgaacagata----ctctgtactcattaa---
i equCab2.chr27            C 0 C 0
s felCat8.chrB1             20477959 35 + 206538554 catcatcccacacagaaa--agttctgtaccgactca---
i felCat8.chrB1            C 0 C 0
s canFam3.chr16             18196203 33 -  59632846 catcatcccaaatagaaa----ctctgtacccactaa---
i canFam3.chr16            C 0 N 0
s monDom5.chr8             174684354 40 + 312544902 CATCACTTAAAAGAGAGAGGGGGCATTTTCTCATTATGAG
i monDom5.chr8             T 6776 C 0
e ornAna1.Contig22913           8772  0 +      9822 I
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637  0 -       895 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55059163  0 +  59856998 I
e anoCar2.chrUn_GL344195       36141 7270 +     59083 I
e pseHum1.KB221303            460951  0 -   1055857 I
e zonAlb1.KB913240            788825  0 -    852449 I
e colLiv1.KB375452           1391464  0 +   4234233 I
e allMis1.JH737334             63284  0 -    565068 I
e falPer1.KB390921           1613136  0 +   3698665 I
e falChe1.KB398121           1475198  0 +   3546035 I
e macEug2.GL053575             11374  0 +     74274 I
e galGal4.chrZ              23195869  3 -  82363669 I
e geoFor1.JH739942           1280732  0 +   5104860 I
e melGal1.chrZ              62956231  0 +  81011772 I
e anaPla1.KB742960            141378  0 +    531124 I
e amaVit1.KB238281               354  0 +      9836 I
e apaSpi1.KB928558           3295625  0 -   3719163 I
e cheMyd1.KB497515           3641299  0 +   9092468 I
e chrPic2.chrUn_KK082917v1  12457941  0 -  13974604 I
e pelSin1.JH211373           2650239  0 -   4257854 I
e melUnd1.JH556568           2080313  0 +   4296882 I
e taeGut2.chrZ              13217382  0 +  72861351 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=9449.000000
s hg38.chr8_KI270814v1_alt     78095 3 +    141812 --aca
s ponAbe2.chr8              59047667 3 + 153482349 --aca
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48121274 3 + 100215132 --aca
i nomLeu3.chr16            C 0 C 0
s calJac3.chr3             190758163 3 - 190850796 --aca
i calJac3.chr3             C 0 N 0
s saiBol1.JH378165          14128614 3 -  14256875 --aca
i saiBol1.JH378165         C 0 N 0
s orcOrc1.KB316932           3032315 3 -  10937097 --aca
i orcOrc1.KB316932         C 0 N 0
s panHod1.KE114653           1506832 3 -   2937107 --aca
i panHod1.KE114653         C 0 N 0
s oviAri3.chr26             17848946 3 +  44077779 --aca
i oviAri3.chr26            C 0 N 0
s capHir1.chr27             17934305 3 +  44118849 --aca
i capHir1.chr27            C 0 N 0
s equCab2.chr27             18748237 3 -  39960074 --aca
i equCab2.chr27            C 0 C 0
s felCat8.chrB1             20477994 3 + 206538554 --aca
i felCat8.chrB1            C 0 N 0
s monDom5.chr8             174684394 3 + 312544902 TTG--
i monDom5.chr8             C 0 C 0
e ornAna1.Contig22913           8772 0 +      9822 I
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637 0 -       895 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55059163 0 +  59856998 I
e anoCar2.chrUn_GL344195       36141 7270 +     59083 I
e pseHum1.KB221303            460951 0 -   1055857 I
e zonAlb1.KB913240            788825 0 -    852449 I
e colLiv1.KB375452           1391464 0 +   4234233 I
e allMis1.JH737334             63284 0 -    565068 I
e falPer1.KB390921           1613136 0 +   3698665 I
e falChe1.KB398121           1475198 0 +   3546035 I
e macEug2.GL053575             11374 0 +     74274 I
e galGal4.chrZ              23195869 3 -  82363669 I
e geoFor1.JH739942           1280732 0 +   5104860 I
e melGal1.chrZ              62956231 0 +  81011772 I
e anaPla1.KB742960            141378 0 +    531124 I
e amaVit1.KB238281               354 0 +      9836 I
e apaSpi1.KB928558           3295625 0 -   3719163 I
e cheMyd1.KB497515           3641299 0 +   9092468 I
e chrPic2.chrUn_KK082917v1  12457941 0 -  13974604 I
e pelSin1.JH211373           2650239 0 -   4257854 I
e melUnd1.JH556568           2080313 0 +   4296882 I
e taeGut2.chrZ              13217382 0 +  72861351 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=1128.000000
s hg38.chr8_KI270814v1_alt     78098 3 +    141812 gCT
s ponAbe2.chr8              59047670 3 + 153482349 gCT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48121277 3 + 100215132 gCT
i nomLeu3.chr16            C 0 C 0
s equCab2.chr27             18748240 3 -  39960074 att
i equCab2.chr27            C 0 N 0
s monDom5.chr8             174684397 3 + 312544902 GAT
i monDom5.chr8             C 0 C 0
e ornAna1.Contig22913           8772 0 +      9822 I
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637 0 -       895 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55059163 0 +  59856998 I
e anoCar2.chrUn_GL344195       36141 7270 +     59083 I
e pseHum1.KB221303            460951 0 -   1055857 I
e zonAlb1.KB913240            788825 0 -    852449 I
e colLiv1.KB375452           1391464 0 +   4234233 I
e allMis1.JH737334             63284 0 -    565068 I
e falPer1.KB390921           1613136 0 +   3698665 I
e falChe1.KB398121           1475198 0 +   3546035 I
e macEug2.GL053575             11374 0 +     74274 I
e galGal4.chrZ              23195869 3 -  82363669 I
e geoFor1.JH739942           1280732 0 +   5104860 I
e melGal1.chrZ              62956231 0 +  81011772 I
e anaPla1.KB742960            141378 0 +    531124 I
e amaVit1.KB238281               354 0 +      9836 I
e apaSpi1.KB928558           3295625 0 -   3719163 I
e cheMyd1.KB497515           3641299 0 +   9092468 I
e chrPic2.chrUn_KK082917v1  12457941 0 -  13974604 I
e pelSin1.JH211373           2650239 0 -   4257854 I
e melUnd1.JH556568           2080313 0 +   4296882 I
e taeGut2.chrZ              13217382 0 +  72861351 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=16273.000000
s hg38.chr8_KI270814v1_alt     78101 66 +    141812 GTTATTTGCATTAGAATctg--ttctaaatattttgtgtaagttctcacttaggcatcacaatgatgt-----
s ponAbe2.chr8              59047673 66 + 153482349 GTTATTTGCATTAGAATctg--ttctaaatattttgtgtaagttctcacttaggcatcacaatgatgt-----
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48121280 66 + 100215132 Gttatttgcgttagaatctg--ttctaaatattttgtgtaagtcctcacttaggcatcacaatgatgt-----
i nomLeu3.chr16            C 0 C 0
s monDom5.chr8             174684400 65 + 312544902 TTTGTAAACCTCAAAATAGGAAATCTAAGTCAAATGTTCAAGTC----CTTAGGT----CAATAAAATCTTTA
i monDom5.chr8             C 0 I 1
e ornAna1.Contig22913           8772  0 +      9822 I
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637  0 -       895 I
e astMex1.KB882082           3904961 703 -   8876373 T
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chrZ              55059163  0 +  59856998 I
e anoCar2.chrUn_GL344195       36141 7270 +     59083 I
e pseHum1.KB221303            460951  0 -   1055857 I
e zonAlb1.KB913240            788825  0 -    852449 I
e colLiv1.KB375452           1391464  0 +   4234233 I
e allMis1.JH737334             63284  0 -    565068 I
e falPer1.KB390921           1613136  0 +   3698665 I
e falChe1.KB398121           1475198  0 +   3546035 I
e macEug2.GL053575             11374  0 +     74274 I
e galGal4.chrZ              23195869  3 -  82363669 I
e geoFor1.JH739942           1280732  0 +   5104860 I
e melGal1.chrZ              62956231  0 +  81011772 I
e anaPla1.KB742960            141378  0 +    531124 I
e amaVit1.KB238281               354  0 +      9836 I
e apaSpi1.KB928558           3295625  0 -   3719163 I
e cheMyd1.KB497515           3641299  0 +   9092468 I
e chrPic2.chrUn_KK082917v1  12457941  0 -  13974604 I
e pelSin1.JH211373           2650239  0 -   4257854 I
e melUnd1.JH556568           2080313  0 +   4296882 I
e taeGut2.chrZ              13217382  0 +  72861351 I
e rheMac3.chr8              61650881 41461 + 150158102 I
e macFas5.chr8              58323911 42259 + 146850525 I
e chlSab2.chr8              53249873 36839 + 139301422 I
e panTro4.chr8              54977249 47550 + 143986469 I

a score=5027.000000
s hg38.chr8_KI270814v1_alt         78167 76 +    141812 cctgtgagatagctactatatttatctccactttatcgatgagaaaa--ttgaggcacag----gaagcctatgtaactttg
s ponAbe2.chr8                  59047739 74 + 153482349 cctatgagatagctactatatttatctccactttattgatgagaaaa--ttgaggcacag----gaagcctatataaca--g
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48121346 74 + 100215132 cctatgagatagctactatatttatctccactttatcgatgagaaaa--ttgaggcacag----gaaggctatgtaaca--g
i nomLeu3.chr16                C 0 C 0
s monDom5.chr8                 174684466 70 + 312544902 CTTTTATGGAAAA-AAAATAGCTAGTTCCACCTACATATCAAGGAAT--GTAAAACACAT----ATATGCCATCTCT-----
i monDom5.chr8                 I 1 C 0
s sarHar1.chr5_GL861763_random      1408 64 +     51001 TCTGTTTGGCATC-AGTATGGTTAATCCAAGGTA-----CAAGGGACCAGCAAATTGCCTTAGGAGAGGC------------
i sarHar1.chr5_GL861763_random N 0 C 0
e ornAna1.Contig22913               8772  0 +      9822 I
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637  0 -       895 I
e astMex1.KB882082               3904961 703 -   8876373 T
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chrZ                  55059163  0 +  59856998 I
e anoCar2.chrUn_GL344195           36141 7270 +     59083 I
e pseHum1.KB221303                460951  0 -   1055857 I
e zonAlb1.KB913240                788825  0 -    852449 I
e colLiv1.KB375452               1391464  0 +   4234233 I
e allMis1.JH737334                 63284  0 -    565068 I
e falPer1.KB390921               1613136  0 +   3698665 I
e falChe1.KB398121               1475198  0 +   3546035 I
e macEug2.GL053575                 11374  0 +     74274 I
e galGal4.chrZ                  23195869  3 -  82363669 I
e geoFor1.JH739942               1280732  0 +   5104860 I
e melGal1.chrZ                  62956231  0 +  81011772 I
e anaPla1.KB742960                141378  0 +    531124 I
e amaVit1.KB238281                   354  0 +      9836 I
e apaSpi1.KB928558               3295625  0 -   3719163 I
e cheMyd1.KB497515               3641299  0 +   9092468 I
e chrPic2.chrUn_KK082917v1      12457941  0 -  13974604 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556568               2080313  0 +   4296882 I
e taeGut2.chrZ                  13217382  0 +  72861351 I
e rheMac3.chr8                  61650881 41461 + 150158102 I
e macFas5.chr8                  58323911 42259 + 146850525 I
e chlSab2.chr8                  53249873 36839 + 139301422 I
e panTro4.chr8                  54977249 47550 + 143986469 I

a score=812.000000
s hg38.chr8_KI270814v1_alt         78243 5 +    141812 cttgt
s ponAbe2.chr8                  59047813 5 + 153482349 cttgt
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48121420 5 + 100215132 cttgt
i nomLeu3.chr16                C 0 C 0
s macFas5.chr8                  58366170 5 + 146850525 ctagc
i macFas5.chr8                 I 42259 C 0
s monDom5.chr8                 174684536 5 + 312544902 ATCAC
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861763_random      1472 5 +     51001 GCAGC
i sarHar1.chr5_GL861763_random C 0 C 0
e ornAna1.Contig22913               8772 0 +      9822 I
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637 0 -       895 I
e astMex1.KB882082               3904961 703 -   8876373 T
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chrZ                  55059163 0 +  59856998 I
e anoCar2.chrUn_GL344195           36141 7270 +     59083 I
e pseHum1.KB221303                460951 0 -   1055857 I
e zonAlb1.KB913240                788825 0 -    852449 I
e colLiv1.KB375452               1391464 0 +   4234233 I
e allMis1.JH737334                 63284 0 -    565068 I
e falPer1.KB390921               1613136 0 +   3698665 I
e falChe1.KB398121               1475198 0 +   3546035 I
e macEug2.GL053575                 11374 0 +     74274 I
e galGal4.chrZ                  23195869 3 -  82363669 I
e geoFor1.JH739942               1280732 0 +   5104860 I
e melGal1.chrZ                  62956231 0 +  81011772 I
e anaPla1.KB742960                141378 0 +    531124 I
e amaVit1.KB238281                   354 0 +      9836 I
e apaSpi1.KB928558               3295625 0 -   3719163 I
e cheMyd1.KB497515               3641299 0 +   9092468 I
e chrPic2.chrUn_KK082917v1      12457941 0 -  13974604 I
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556568               2080313 0 +   4296882 I
e taeGut2.chrZ                  13217382 0 +  72861351 I
e rheMac3.chr8                  61650881 41461 + 150158102 I
e chlSab2.chr8                  53249873 36839 + 139301422 I
e panTro4.chr8                  54977249 47550 + 143986469 I

a score=72549.000000
s hg38.chr8_KI270814v1_alt         78248 59 +    141812 -----aagtgaaaggccttaaagtagaattcaagcccaag-----------ttgaactgaacccaaaggccaagc
s panTro4.chr8                  55024799 59 + 143986469 -----AAGCGAAAGATCTTAAAATAGTATTCAAGTGCAAG-----------GTCAACTAAACCGACAGGCCAAGC
i panTro4.chr8                 I 47550 C 0
s ponAbe2.chr8                  59047818 59 + 153482349 -----aagtgaaaggccttaaagtagaattcaaccccaag-----------ttgaactgaacccaaaggccaagc
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48121425 59 + 100215132 -----aagtgaaaggccttaaagtagaattcaagcccaag-----------ttgaactgaacccaagggccaagc
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                  61692342 59 + 150158102 -----aagtgaaagatcttaaaatagtattcaactgcagg-----------ttcaactgaacccaaaggccaagc
i rheMac3.chr8                 I 41461 C 0
s macFas5.chr8                  58366175 59 + 146850525 -----aagtgaaagatcttaaaatagtattcaactgcagg-----------ttcaactgaacccaaaggccaagc
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53286712 59 + 139301422 -----aagtgaaagatcttaaaatagtattcaactgcagg-----------ttcaactgaacccaaagcccaagc
i chlSab2.chr8                 I 36839 C 0
s monDom5.chr8                 174684541 70 + 312544902 AAATAAGAGTAAAAA-----AATTAAAATTCAAATGCCTAAAGTGTTTTTTTTTAATAGTCAGAGAAGACCAAAA
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861763_random      1477 43 +     51001 AGCTGAGGTCAGAAACT---GAGCAAAGTTCCCATGCCAA---------TCTGTA--------------------
i sarHar1.chr5_GL861763_random C 0 I 17
e ornAna1.Contig22913               8772  0 +      9822 I
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637  0 -       895 I
e astMex1.KB882082               3904961 703 -   8876373 T
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chrZ                  55059163  0 +  59856998 I
e anoCar2.chrUn_GL344195           36141 7270 +     59083 I
e pseHum1.KB221303                460951  0 -   1055857 I
e zonAlb1.KB913240                788825  0 -    852449 I
e colLiv1.KB375452               1391464  0 +   4234233 I
e allMis1.JH737334                 63284  0 -    565068 I
e falPer1.KB390921               1613136  0 +   3698665 I
e falChe1.KB398121               1475198  0 +   3546035 I
e macEug2.GL053575                 11374  0 +     74274 I
e galGal4.chrZ                  23195869  3 -  82363669 I
e geoFor1.JH739942               1280732  0 +   5104860 I
e melGal1.chrZ                  62956231  0 +  81011772 I
e anaPla1.KB742960                141378  0 +    531124 I
e amaVit1.KB238281                   354  0 +      9836 I
e apaSpi1.KB928558               3295625  0 -   3719163 I
e cheMyd1.KB497515               3641299  0 +   9092468 I
e chrPic2.chrUn_KK082917v1      12457941  0 -  13974604 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556568               2080313  0 +   4296882 I
e taeGut2.chrZ                  13217382  0 +  72861351 I

a score=13506.000000
s hg38.chr8_KI270814v1_alt         78307 4 +    141812 tttt
s panTro4.chr8                  55024858 4 + 143986469 TCTT
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59047877 4 + 153482349 tttt
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48121484 4 + 100215132 tttt
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                  61692401 4 + 150158102 tctt
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366234 4 + 146850525 tctt
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53286771 4 + 139301422 tctt
i chlSab2.chr8                 C 0 C 0
s monDom5.chr8                 174684611 4 + 312544902 TTTT
i monDom5.chr8                 C 0 I 3
s taeGut2.chr1                  80454842 4 + 118548696 tttt
i taeGut2.chr1                 n 0 I 1
s astMex1.KB882082               3904258 4 -   8876373 tttt
i astMex1.KB882082             T 703 C 0
e ornAna1.Contig22913               8772 0 +      9822 I
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chrZ                  55059163 0 +  59856998 I
e anoCar2.chrUn_GL344195           36141 7270 +     59083 I
e pseHum1.KB221303                460951 0 -   1055857 I
e zonAlb1.KB913240                788825 0 -    852449 I
e colLiv1.KB375452               1391464 0 +   4234233 I
e allMis1.JH737334                 63284 0 -    565068 I
e falPer1.KB390921               1613136 0 +   3698665 I
e falChe1.KB398121               1475198 0 +   3546035 I
e macEug2.GL053575                 11374 0 +     74274 I
e galGal4.chrZ                  23195869 3 -  82363669 I
e geoFor1.JH739942               1280732 0 +   5104860 I
e sarHar1.chr5_GL861763_random      1520 17 +     51001 I
e melGal1.chrZ                  62956231 0 +  81011772 I
e anaPla1.KB742960                141378 0 +    531124 I
e amaVit1.KB238281                   354 0 +      9836 I
e apaSpi1.KB928558               3295625 0 -   3719163 I
e cheMyd1.KB497515               3641299 0 +   9092468 I
e chrPic2.chrUn_KK082917v1      12457941 0 -  13974604 I
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556568               2080313 0 +   4296882 I

a score=-5592.000000
s hg38.chr8_KI270814v1_alt         78311 19 +    141812 TTCTATTCA--A-----ACAGGCCAC---------
s panTro4.chr8                  55024862 18 + 143986469 T-CTATCCA--A-----ATAGGTCAC---------
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59047881 18 + 153482349 t-ctagtca--a-----acaggccac---------
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48121488 19 + 100215132 ttctattca--a-----acaggccac---------
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                  61692405 18 + 150158102 t-ctattCA--A-----ATAGGTCAT---------
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366238 18 + 146850525 t-ctattCA--A-----ATAGGTCAT---------
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53286775 18 + 139301422 t-ctattCA--A-----ATAGGTCAT---------
i chlSab2.chr8                 C 0 C 0
s monDom5.chr8                 174684618 19 + 312544902 T-CAATTGT--A----TAGAGGTTAT---------
i monDom5.chr8                 I 3 C 0
s sarHar1.chr5_GL861763_random      1537 23 +     51001 T-CTCCCCC--AGCACCAAGGGCAAT---------
i sarHar1.chr5_GL861763_random I 17 C 0
s macEug2.GL059506                  5652 15 +     21939 A-TTCCCCC--A--------GGCAAT---------
i macEug2.GL059506             n 0 C 0
s taeGut2.chr1                  80454847 20 + 118548696 t-ctatttatca-----atctgttat---------
i taeGut2.chr1                 I 1 I 2
s astMex1.KB882082               3904262 19 -   8876373 ----------------tttttgtcatttttgcaaG
i astMex1.KB882082             C 0 C 0
e ornAna1.Contig22913               8772  0 +      9822 I
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chrZ                  55059163  0 +  59856998 I
e anoCar2.chrUn_GL344195           36141 7270 +     59083 I
e pseHum1.KB221303                460951  0 -   1055857 I
e zonAlb1.KB913240                788825  0 -    852449 I
e colLiv1.KB375452               1391464  0 +   4234233 I
e allMis1.JH737334                 63284  0 -    565068 I
e falPer1.KB390921               1613136  0 +   3698665 I
e falChe1.KB398121               1475198  0 +   3546035 I
e galGal4.chrZ                  23195869  3 -  82363669 I
e geoFor1.JH739942               1280732  0 +   5104860 I
e melGal1.chrZ                  62956231  0 +  81011772 I
e anaPla1.KB742960                141378  0 +    531124 I
e amaVit1.KB238281                   354  0 +      9836 I
e apaSpi1.KB928558               3295625  0 -   3719163 I
e cheMyd1.KB497515               3641299  0 +   9092468 I
e chrPic2.chrUn_KK082917v1      12457941  0 -  13974604 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556568               2080313  0 +   4296882 I

a score=5513.000000
s hg38.chr8_KI270814v1_alt         78330 2 +    141812 TC
s panTro4.chr8                  55024880 2 + 143986469 TC
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59047899 2 + 153482349 tc
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48121507 2 + 100215132 tc
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                  61692423 2 + 150158102 TC
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366256 2 + 146850525 TC
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53286793 2 + 139301422 TC
i chlSab2.chr8                 C 0 C 0
s monDom5.chr8                 174684637 2 + 312544902 TA
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861763_random      1560 2 +     51001 TT
i sarHar1.chr5_GL861763_random C 0 C 0
s macEug2.GL059506                  5667 2 +     21939 TT
i macEug2.GL059506             C 0 C 0
s anoCar2.chrUn_GL344195           43411 2 +     59083 TC
i anoCar2.chrUn_GL344195       I 7270 C 0
s astMex1.KB882082               3904281 2 -   8876373 AC
i astMex1.KB882082             C 0 C 0
e ornAna1.Contig22913               8772 0 +      9822 I
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chrZ                  55059163 0 +  59856998 I
e pseHum1.KB221303                460951 0 -   1055857 I
e zonAlb1.KB913240                788825 0 -    852449 I
e colLiv1.KB375452               1391464 0 +   4234233 I
e allMis1.JH737334                 63284 0 -    565068 I
e falPer1.KB390921               1613136 0 +   3698665 I
e falChe1.KB398121               1475198 0 +   3546035 I
e galGal4.chrZ                  23195869 3 -  82363669 I
e geoFor1.JH739942               1280732 0 +   5104860 I
e melGal1.chrZ                  62956231 0 +  81011772 I
e anaPla1.KB742960                141378 0 +    531124 I
e amaVit1.KB238281                   354 0 +      9836 I
e apaSpi1.KB928558               3295625 0 -   3719163 I
e cheMyd1.KB497515               3641299 0 +   9092468 I
e chrPic2.chrUn_KK082917v1      12457941 0 -  13974604 I
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556568               2080313 0 +   4296882 I
e taeGut2.chr1                  80454867 2 + 118548696 I

a score=2203.000000
s hg38.chr8_KI270814v1_alt         78332 2 +    141812 TT
s panTro4.chr8                  55024882 2 + 143986469 TT
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59047901 2 + 153482349 tt
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48121509 2 + 100215132 tt
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                  61692425 2 + 150158102 TT
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366258 2 + 146850525 TT
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53286795 2 + 139301422 TT
i chlSab2.chr8                 C 0 C 0
s monDom5.chr8                 174684639 2 + 312544902 TG
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861763_random      1562 1 +     51001 T-
i sarHar1.chr5_GL861763_random C 0 N 0
s macEug2.GL059506                  5669 2 +     21939 TG
i macEug2.GL059506             C 0 C 0
s taeGut2.chr1                  80454869 2 + 118548696 tt
i taeGut2.chr1                 I 2 C 0
s allMis1.JH737798                 79150 2 +    106177 TA
i allMis1.JH737798             T 829 C 0
s anoCar2.chrUn_GL344195           43413 2 +     59083 TC
i anoCar2.chrUn_GL344195       C 0 C 0
s astMex1.KB882082               3904283 2 -   8876373 TT
i astMex1.KB882082             C 0 C 0
e ornAna1.Contig22913               8772 0 +      9822 I
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chrZ                  55059163 0 +  59856998 I
e pseHum1.KB221303                460951 0 -   1055857 I
e zonAlb1.KB913240                788825 0 -    852449 I
e colLiv1.KB375452               1391464 0 +   4234233 I
e falPer1.KB390921               1613136 0 +   3698665 I
e falChe1.KB398121               1475198 0 +   3546035 I
e galGal4.chrZ                  23195869 3 -  82363669 I
e geoFor1.JH739942               1280732 0 +   5104860 I
e melGal1.chrZ                  62956231 0 +  81011772 I
e anaPla1.KB742960                141378 0 +    531124 I
e amaVit1.KB238281                   354 0 +      9836 I
e apaSpi1.KB928558               3295625 0 -   3719163 I
e cheMyd1.KB497515               3641299 0 +   9092468 I
e chrPic2.chrUn_KK082917v1      12457941 0 -  13974604 I
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556568               2080313 0 +   4296882 I

a score=5927.000000
s hg38.chr8_KI270814v1_alt         78334 20 +    141812 ---TTATTATTGTAGTGAGTAAT
s panTro4.chr8                  55024884 20 + 143986469 ---TCATTGATGCAGTGAATAAT
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59047903 20 + 153482349 ---ttgTTATTGTAGTGAGTAAT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48121511 20 + 100215132 ---ttgTTATTGTAGTGAGTAAT
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                  61692427 20 + 150158102 ---TCATTGATGTAGTGAATAAT
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366260 20 + 146850525 ---TCATTGATGTAGTGAATAAT
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53286797 20 + 139301422 ---TCATTGATGTAGTGAATAAT
i chlSab2.chr8                 C 0 C 0
s monDom5.chr8                 174684641 14 + 312544902 ---------TAATAATAAGTACC
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861934_random     56789 20 -    124633 ---TTATTATTATAATGAGCACT
i sarHar1.chr5_GL861934_random N 0 C 0
s macEug2.GL059506                  5671 15 +     21939 --------TCCATATCCAGCAAT
i macEug2.GL059506             C 0 C 0
s taeGut2.chr1                  80454871 18 + 118548696 ---taattgttattttaagtt--
i taeGut2.chr1                 C 0 C 0
s allMis1.JH737798                 79152 18 +    106177 ---TATTTAGCTTGTAATGCT--
i allMis1.JH737798             C 0 C 0
s anoCar2.chrUn_GL344195           43415 20 +     59083 ---TGGTTCCTGTGGTAGGAGGC
i anoCar2.chrUn_GL344195       C 0 C 0
s astMex1.KB882082               3904285 20 -   8876373 gtattataactattattagt---
i astMex1.KB882082             C 0 I 2
e ornAna1.Contig22913               8772  0 +      9822 I
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chrZ                  55059163  0 +  59856998 I
e pseHum1.KB221303                460951  0 -   1055857 I
e zonAlb1.KB913240                788825  0 -    852449 I
e colLiv1.KB375452               1391464  0 +   4234233 I
e falPer1.KB390921               1613136  0 +   3698665 I
e falChe1.KB398121               1475198  0 +   3546035 I
e galGal4.chrZ                  23195869  3 -  82363669 I
e geoFor1.JH739942               1280732  0 +   5104860 I
e melGal1.chrZ                  62956231  0 +  81011772 I
e anaPla1.KB742960                141378  0 +    531124 I
e amaVit1.KB238281                   354  0 +      9836 I
e apaSpi1.KB928558               3295625  0 -   3719163 I
e cheMyd1.KB497515               3641299  0 +   9092468 I
e chrPic2.chrUn_KK082917v1      12457941  0 -  13974604 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556568               2080313  0 +   4296882 I

a score=8658.000000
s hg38.chr8_KI270814v1_alt         78354 11 +    141812 AAGAGCTAA--AA
s panTro4.chr8                  55024904 11 + 143986469 AAGAGCTAA--TA
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59047923 11 + 153482349 AAGAGCTAA--AA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48121531 11 + 100215132 AAGAGCTAA--AA
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                  61692447 11 + 150158102 AAGAGCTAA--TA
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366280 11 + 146850525 AAGAGCTAA--TA
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53286817 11 + 139301422 AAGAGCTAA--TA
i chlSab2.chr8                 C 0 C 0
s monDom5.chr8                 174684655 11 + 312544902 AAGAGTAAA--TG
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861934_random     56809 11 -    124633 GAGAGcaaa--ta
i sarHar1.chr5_GL861934_random C 0 C 0
s macEug2.GL059506                  5686 11 +     21939 AAGAGCTAA--TG
i macEug2.GL059506             C 0 C 0
s taeGut2.chr1                  80454889  4 + 118548696 -----ttaa----
i taeGut2.chr1                 C 0 C 0
s allMis1.JH737798                 79170  4 +    106177 -----TTGA----
i allMis1.JH737798             C 0 C 0
s anoCar2.chrUn_GL344195           43435 11 +     59083 ACGAATCAAAG--
i anoCar2.chrUn_GL344195       C 0 C 0
s xenTro7.KB021649             165249766 11 + 215906545 AAGATCTGA--AG
i xenTro7.KB021649             N 0 C 0
s astMex1.KB882082               3904307  7 -   8876373 atgtgtt------
i astMex1.KB882082             I 2 C 0
e ornAna1.Contig22913               8772  0 +      9822 I
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chrZ                  55059163  0 +  59856998 I
e pseHum1.KB221303                460951  0 -   1055857 I
e zonAlb1.KB913240                788825  0 -    852449 I
e colLiv1.KB375452               1391464  0 +   4234233 I
e falPer1.KB390921               1613136  0 +   3698665 I
e falChe1.KB398121               1475198  0 +   3546035 I
e galGal4.chrZ                  23195869  3 -  82363669 I
e geoFor1.JH739942               1280732  0 +   5104860 I
e melGal1.chrZ                  62956231  0 +  81011772 I
e anaPla1.KB742960                141378  0 +    531124 I
e amaVit1.KB238281                   354  0 +      9836 I
e apaSpi1.KB928558               3295625  0 -   3719163 I
e cheMyd1.KB497515               3641299  0 +   9092468 I
e chrPic2.chrUn_KK082917v1      12457941  0 -  13974604 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556568               2080313  0 +   4296882 I

a score=5941.000000
s hg38.chr8_KI270814v1_alt         78365 2 +    141812 AA
s panTro4.chr8                  55024915 2 + 143986469 AA
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59047934 2 + 153482349 AA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48121542 2 + 100215132 AA
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                  61692458 2 + 150158102 AA
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366291 2 + 146850525 AA
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53286828 2 + 139301422 AA
i chlSab2.chr8                 C 0 C 0
s monDom5.chr8                 174684666 2 + 312544902 TA
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861934_random     56820 2 -    124633 ta
i sarHar1.chr5_GL861934_random C 0 C 0
s macEug2.GL059506                  5697 2 +     21939 CA
i macEug2.GL059506             C 0 C 0
s allMis1.JH737798                 79174 1 +    106177 -A
i allMis1.JH737798             C 0 I 1
s chrPic2.chr2                  18522918 1 -  68452538 -A
i chrPic2.chr2                 T 672 I 1
s anoCar2.chrUn_GL344195           43446 2 +     59083 GA
i anoCar2.chrUn_GL344195       C 0 C 0
s xenTro7.KB021649             165249777 2 + 215906545 GA
i xenTro7.KB021649             C 0 I 5
e ornAna1.Contig22913               8772 0 +      9822 I
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637 0 -       895 I
e astMex1.KB882082               3904314 0 -   8876373 C
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chrZ                  55059163 0 +  59856998 I
e pseHum1.KB221303                460951 0 -   1055857 I
e zonAlb1.KB913240                788825 0 -    852449 I
e colLiv1.KB375452               1391464 0 +   4234233 I
e falPer1.KB390921               1613136 0 +   3698665 I
e falChe1.KB398121               1475198 0 +   3546035 I
e galGal4.chrZ                  23195869 3 -  82363669 I
e geoFor1.JH739942               1280732 0 +   5104860 I
e melGal1.chrZ                  62956231 0 +  81011772 I
e anaPla1.KB742960                141378 0 +    531124 I
e amaVit1.KB238281                   354 0 +      9836 I
e apaSpi1.KB928558               3295625 0 -   3719163 I
e cheMyd1.KB497515               3641299 0 +   9092468 I
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556568               2080313 0 +   4296882 I
e taeGut2.chr1                  80454893 0 + 118548696 C

a score=-47987.000000
s hg38.chr8_KI270814v1_alt         78367 11 +    141812 TATTATGT--------------TTT-
s panTro4.chr8                  55024917 10 + 143986469 TATTGT-C--------------CCT-
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59047936 11 + 153482349 TATTGTAC--------------TTT-
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48121544 10 + 100215132 TATTGT-A--------------CTT-
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                  61692460 10 + 150158102 TATTGT-T--------------TCT-
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366293 10 + 146850525 TATTGT-T--------------TCT-
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53286830 10 + 139301422 TATTGT-T--------------TCT-
i chlSab2.chr8                 C 0 C 0
s monDom5.chr8                 174684668 21 + 312544902 AATTTT-A-ACAACAGTA--AATTG-
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861934_random     56822 24 -    124633 aatttt-acaaaatggcAATAATTT-
i sarHar1.chr5_GL861934_random C 0 C 0
s macEug2.GL059506                  5699 12 +     21939 TATTTT-A------------GATTT-
i macEug2.GL059506             C 0 C 0
s taeGut2.chr1                  80454893  8 + 118548696 --tttt-g--------------att-
i taeGut2.chr1                 C 0 I 1
s galGal4.chr1                  24066977 10 + 195276750 tatttt-g--------------ttt-
i galGal4.chr1                 T 655 I 1
s melGal1.chr1                  24928692 10 + 204065131 TATTAT-G--------------TTT-
i melGal1.chr1                 T 674 I 1
s allMis1.JH737798                 79176  9 +    106177 ---TAT-G------------GAAGT-
i allMis1.JH737798             I 1 I 1
s chrPic2.chr2                  18522920  7 -  68452538 ---TAT-G--------------GTT-
i chrPic2.chr2                 I 1 I 4
s anoCar2.chrUn_GL344195           43448  9 +     59083 -GGTTG-G--------------GGT-
i anoCar2.chrUn_GL344195       C 0 I 2
s xenTro7.KB021649             165249784  6 + 215906545 CATTCC--------------------
i xenTro7.KB021649             I 5 I 2
s astMex1.KB882082               3904314 11 -   8876373 tgttat-g--------------TTTC
i astMex1.KB882082             C 0 C 0
e ornAna1.Contig22913               8772  0 +      9822 I
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chrZ                  55059163  0 +  59856998 I
e pseHum1.KB221303                460951  0 -   1055857 I
e zonAlb1.KB913240                788825  0 -    852449 I
e colLiv1.KB375452               1391464  0 +   4234233 I
e falPer1.KB390921               1613136  0 +   3698665 I
e falChe1.KB398121               1475198  0 +   3546035 I
e geoFor1.JH739942               1280732  0 +   5104860 I
e anaPla1.KB742960                141378  0 +    531124 I
e amaVit1.KB238281                   354  0 +      9836 I
e apaSpi1.KB928558               3295625  0 -   3719163 I
e cheMyd1.KB497515               3641299  0 +   9092468 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556568               2080313  0 +   4296882 I

a score=-35125.000000
s hg38.chr8_KI270814v1_alt         78378 10 +    141812 --TTTCA--GGA--------GA
s panTro4.chr8                  55024927 10 + 143986469 --TTTCA--GGA--------GG
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59047947 10 + 153482349 --TTTCA--GGA--------GA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48121554 10 + 100215132 --TTTCA--GGA--------GA
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                  61692470 10 + 150158102 --TTTCA--GGG--------GG
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366303 10 + 146850525 --TTTCA--GGG--------GG
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53286840 10 + 139301422 --TTTCA--GGG--------GG
i chlSab2.chr8                 C 0 C 0
s monDom5.chr8                 174684689 18 + 312544902 --TTCCA--TAATCAATGttta
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861934_random     56846 10 -    124633 --ctcca--taa--------ta
i sarHar1.chr5_GL861934_random C 0 C 0
s macEug2.GL059506                  5711 12 +     21939 --CTTCAGGTGA--------CA
i macEug2.GL059506             C 0 C 0
s taeGut2.chr1                  80454902  6 + 118548696 --ttctc--c------------
i taeGut2.chr1                 I 1 C 0
s galGal4.chr1                  24066988 10 + 195276750 --ttttg--gga--------GG
i galGal4.chr1                 I 1 I 1
s melGal1.chr1                  24928703 10 + 204065131 --TTTTG--GGA--------GG
i melGal1.chr1                 I 1 I 1
s allMis1.JH737798                 79186 10 +    106177 --TTTCC--ATA--------GG
i allMis1.JH737798             I 1 I 1
s cheMyd1.KB478633               2433008  7 +   6037886 --ttaaa--gc-----------
i cheMyd1.KB478633             T 653 C 0
s chrPic2.chr2                  18522931  7 -  68452538 --tttaa--gt-----------
i chrPic2.chr2                 I 4 C 0
s anoCar2.chrUn_GL344195           43459 10 +     59083 --TCTCA--GGA--------TA
i anoCar2.chrUn_GL344195       I 2 I 1
s xenTro7.KB021649             165249792  8 + 215906545 --TTTGT--GGA----------
i xenTro7.KB021649             I 2 I 1
s astMex1.KB882082               3904325 10 -   8876373 GTTATGA--TAA----------
i astMex1.KB882082             C 0 C 0
e ornAna1.Contig22913               8772  0 +      9822 I
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chrZ                  55059163  0 +  59856998 I
e pseHum1.KB221303                460951  0 -   1055857 I
e zonAlb1.KB913240                788825  0 -    852449 I
e colLiv1.KB375452               1391464  0 +   4234233 I
e falPer1.KB390921               1613136  0 +   3698665 I
e falChe1.KB398121               1475198  0 +   3546035 I
e geoFor1.JH739942               1280732  0 +   5104860 I
e anaPla1.KB742960                141378  0 +    531124 I
e amaVit1.KB238281                   354  0 +      9836 I
e apaSpi1.KB928558               3295625  0 -   3719163 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556568               2080313  0 +   4296882 I

a score=-13848.000000
s hg38.chr8_KI270814v1_alt         78388 3 +    141812 --AAA
s panTro4.chr8                  55024937 3 + 143986469 --AAA
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59047957 3 + 153482349 --AAA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48121564 3 + 100215132 --AAA
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                  61692480 3 + 150158102 --AAA
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366313 3 + 146850525 --AAA
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53286850 3 + 139301422 --AAA
i chlSab2.chr8                 C 0 C 0
s monDom5.chr8                 174684707 3 + 312544902 --aaa
i monDom5.chr8                 C 0 I 4
s sarHar1.chr5_GL861934_random     56856 3 -    124633 --aat
i sarHar1.chr5_GL861934_random C 0 I 4
s macEug2.GL059506                  5723 3 +     21939 --ATA
i macEug2.GL059506             C 0 I 4
s ornAna1.Ultra479               3870816 3 -   6008416 --AGA
i ornAna1.Ultra479             T 995 C 0
s galGal4.chr1                  24066999 2 + 195276750 --AA-
i galGal4.chr1                 I 1 C 0
s melGal1.chr1                  24928714 2 + 204065131 --AA-
i melGal1.chr1                 I 1 C 0
s allMis1.JH737798                 79197 2 +    106177 --CA-
i allMis1.JH737798             I 1 I 5
s anoCar2.chrUn_GL344195           43470 2 +     59083 --AA-
i anoCar2.chrUn_GL344195       I 1 C 0
s xenTro7.KB021649             165249801 2 + 215906545 --AA-
i xenTro7.KB021649             I 1 C 0
s astMex1.KB882082               3904335 3 -   8876373 ATA--
i astMex1.KB882082             C 0 C 0
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chrZ                  55059163 0 +  59856998 I
e pseHum1.KB221303                460951 0 -   1055857 I
e zonAlb1.KB913240                788825 0 -    852449 I
e colLiv1.KB375452               1391464 0 +   4234233 I
e falPer1.KB390921               1613136 0 +   3698665 I
e falChe1.KB398121               1475198 0 +   3546035 I
e geoFor1.JH739942               1280732 0 +   5104860 I
e anaPla1.KB742960                141378 0 +    531124 I
e amaVit1.KB238281                   354 0 +      9836 I
e apaSpi1.KB928558               3295625 0 -   3719163 I
e cheMyd1.KB478633               2433015 0 +   6037886 C
e chrPic2.chr2                  18522938 0 -  68452538 C
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556568               2080313 0 +   4296882 I
e taeGut2.chr1                  80454908 0 + 118548696 C

a score=-648535.000000
s hg38.chr8_KI270814v1_alt         78391  97 +    141812 TTA----TTTGTTTTGAAGGT-------------AG----------AGGAAGAGC------AT--G-----------CTATTT---AATG---------------TTTACTAT-TACAT----GAATTACTCT--ATGTTTTGAGAT---GGTGTA--------------CTGAAACTTTCTAAA
s panTro4.chr8                  55024940 100 + 143986469 TTA-ATATTTGTTTTGAAAGC-------------AG----------AGGAATAGC------AT--G-----------CTATTT---GTTG---------------TTTGCAAT-TACGT----GAATCATTGT--ATGTTTTGAGAT---AGTGGA--------------CTAAACTTCTCTCAA
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59047960  97 + 153482349 TTA----TTTGTTTTGAAGGT-------------AG----------AGGAAGAGC------AT--G-----------CTGTTT---AATG---------------TTTACTAT-TACAT----GAATTACTCT--ATGTTTTGAGAC---AGTGGA--------------CTGAAACTTTCTAAA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48121567  97 + 100215132 TTA----TTTGTTTTGAAGGT-------------AG----------AGGAAGAGC------AT--G-----------CTATTG---AATG---------------TTTACTAT-TACAT----GAATTACTCT--ATGTTTTGAGAT---AGTGGA--------------CTGAAACTTTCTAAA
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                  61692483 101 + 150158102 TTAAATATTTGTTTTGAAGGC-------------AG----------AGGAATAGC------AT--G-----------CTATTT---ATTG---------------TTTGCAAT-TACAT----GAATCATTGT--ATGTTTTGAGAT---AGTGGA--------------CTAAACTTCTCTCAG
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366316 101 + 146850525 TTAAATATTTGTTTTGAAGGC-------------AG----------AGGAATAGC------AT--G-----------CTATTT---ATTG---------------TTTGCAAT-TACAT----GAATCATTGT--ATGTTTTGAGAT---AGTGGA--------------CTAAACTCCTCTCAG
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53286853 101 + 139301422 TTAAATATTTGTTTTGAAGGC-------------AG----------AGGAATAGC------AT--G-----------CTATTT---ATTG---------------TTTGCAAT-TACAT----GAATCATTGT--ATGTTTTGAGAT---AGTGGA--------------CTAAACTTCTCTCAG
i chlSab2.chr8                 C 0 C 0
s monDom5.chr8                 174684714 110 + 312544902 ttaca----aattataaacaa-------------aaatatttttatattaaaaGTGCTCTAAT--A-----------GCATTTTTACAAT---------------TTTGATCT-TTCAT--------------------------AT---GTAGTACAACATGATCAAATATGAATTCTGTTTTG
i monDom5.chr8                 I 4 C 0
s sarHar1.chr5_GL861934_random     56863 132 -    124633 tgaaattctcaCAGTGTTGAT-------------AAATGTTACTATATTAAAAAG--tctaat--t-----------acatttatataat---------------tttgatag-ttcataatataataataat--atagatata-tc---attatataa-atgatgaGA-GTGTA-ATTGTTTTG
i sarHar1.chr5_GL861934_random I 4 C 0
s macEug2.GL059506                  5730 119 +     21939 TGACATATTTATTTTGGCAGT-------------GATTTACAGTGAAGTAATAAG--AATAATAAT-----------GCATTT---TATG---------------TTAGAAAT-CACACTACATAATAATTGT--ACAGTTTTGTTT---GTTGTA----------------GTACATCATTAAG
i macEug2.GL059506             I 4 C 0
s ornAna1.Ultra479               3870819  90 -   6008416 TGA----TCTGGGCTGTGGGC-------------CG----------AAGAGTGAT------TC--G-----------CCTTTT------G---------------TTTTAAAA-TGAGT----TAAC--TTGT--TTGATTTCGGTT---CCCTTA----------------ACATGCTGTCTAA
i ornAna1.Ultra479             C 0 C 0
s taeGut2.chr1                  80454908  82 + 118548696 ----ctgttccactggggtgg-------------ag----------agggagagg------at--gtgaacgagtagctgcat---ggtgctt--------ctttgccatcca-gactt----aaaccaggac----------------------------------------------------
i taeGut2.chr1                 C 0 I 500
s amaVit1.KB277496                  6839  75 -     10329 ----ttgttctgcc--------------------------------aGCTGAGGC------TT--GTTGGC------CTATGT---GGTG---------------GGTACCGC-AGCCT----GAAACAAGAC--CTTCAGCTGTCT---GCC--------------------------------
i amaVit1.KB277496             T 640 I 11
s galGal4.chr1                  24067001  72 + 195276750 ----------TTTTGGGatgg-------------ag----------aaatgaaat------tt--gCC---------CTATCC---A------------------TGTACCAC-AGagt----gaaatgattt--atttagCTGTCA---GTT--------------------------------
i galGal4.chr1                 C 0 I 2
s melGal1.chr1                  24928716  70 + 204065131 ------------CTGGGATGG-------------AG----------AAATGAAAT------TT--GCC---------CTATCC---A------------------TGTACCAC-AGAGT----GAAATGATTT--ATTTAGCTGTCA---GTT--------------------------------
i melGal1.chr1                 C 0 I 2
s allMis1.JH737798                 79204  93 +    106177 ----TTTTTCCTTTAAGGTTGATTTAC-----AAAA----------ATCTATAAT------TT--GAG---------CCAAAT---CTTAAA-------------TTTACTGT-AGTCT--TATAAACACTAT--GCTTTCTTTTCT---GTT--------------------------------
i allMis1.JH737798             I 5 I 1
s cheMyd1.KB478633               2433015  89 +   6037886 -----------------------ttatttttacaaa----------atctaaaat------tt--ggg---------ccaaat---ttaAATT-GACATTATTCCTGTAACAT-AAACA----TCAAACTTTT--ATTTGGTTGTCT---GTT--------------------------------
i cheMyd1.KB478633             C 0 I 5
s chrPic2.chr2                  18522938  89 -  68452538 -----------------------ttatttttacaaa----------atctaaaat------tT--GGG---------CCAAAT---TTAAATT-GACATTATTCCTGTAACAT-AAACA----CCAAACTTTT--ATTTGGTTGTCT---GTT--------------------------------
i chrPic2.chr2                 C 0 I 5
s anoCar2.chrUn_GL344195           43472  78 +     59083 ------------------------------TTGGAG----------AACCCAAGT------TT--GTC---------CTGACA---GAGAAAGAGTCA-------AATAACAC-TAAAG----AAAATAATATCAATTTTATTCTGT---GAT--------------------------------
i anoCar2.chrUn_GL344195       C 0 I 9
s xenTro7.KB021649             165249803  91 + 215906545 ------CCATTCCTTAAAGAG-------------AT----------AGTGACACC------AT--G-----------CTATTT---ATAA---------------ATTGCTAT-AAAGG----TATTTGCCTG--ATGCTTTTACAT---GAC-----------------CTATATGATCCCCC-
i xenTro7.KB021649             C 0 C 0
s astMex1.KB882082               3904338  73 -   8876373 --------------------------------------------TCAGTTATAGT--CACAAT--T-----------TTGTAG---GACG---------------TTTAAGACGTTTAA----GGAATGCTGC--ATACATTTCCCTCTGATTGGA-----------------------------
i astMex1.KB882082             C 0 C 0
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637   0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chrZ                  55059163   0 +  59856998 I
e pseHum1.KB221303                460951   0 -   1055857 I
e zonAlb1.KB913240                788825   0 -    852449 I
e colLiv1.KB375452               1391464   0 +   4234233 I
e falPer1.KB390921               1613136   0 +   3698665 I
e falChe1.KB398121               1475198   0 +   3546035 I
e geoFor1.JH739942               1280732   0 +   5104860 I
e anaPla1.KB742960                141378   0 +    531124 I
e apaSpi1.KB928558               3295625   0 -   3719163 I
e pelSin1.JH211373               2650239   0 -   4257854 I
e melUnd1.JH556568               2080313   0 +   4296882 I

a score=15014.000000
s hg38.chr8_KI270814v1_alt         78488 4 +    141812 AATT
s panTro4.chr8                  55025040 4 + 143986469 TGTC
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59048057 4 + 153482349 AATT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48121664 4 + 100215132 AATT
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                  61692584 4 + 150158102 TATC
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366417 4 + 146850525 TATC
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53286954 4 + 139301422 TATC
i chlSab2.chr8                 C 0 C 0
s monDom5.chr8                 174684824 4 + 312544902 TAAC
i monDom5.chr8                 C 0 I 7
s sarHar1.chr5_GL861934_random     56995 4 -    124633 TAAT
i sarHar1.chr5_GL861934_random C 0 I 7
s macEug2.GL059506                  5849 4 +     21939 TAAT
i macEug2.GL059506             C 0 I 8
s ornAna1.Ultra479               3870909 4 -   6008416 CTTG
i ornAna1.Ultra479             C 0 C 0
s colLiv1.KB375358               1019048 4 +   1462937 aata
i colLiv1.KB375358             T 647 C 0
s ficAlb2.chr1A                 24320727 4 +  74947036 aatt
i ficAlb2.chr1A                T 629 C 0
s zonAlb1.KB913045              12581453 4 +  16390125 aatt
i zonAlb1.KB913045             T 625 C 0
s geoFor1.JH739914               5157177 4 -   7168866 agtt
i geoFor1.JH739914             T 631 C 0
s taeGut2.chr1A                 23692112 4 +  73657157 AATT
i taeGut2.chr1A                T 539 C 0
s pseHum1.KB221193               9788832 4 +  32995986 aatt
i pseHum1.KB221193             T 565 C 0
s melUnd1.JH556589               7679493 4 -   7952740 AATG
i melUnd1.JH556589             I 10921 C 0
s amaVit1.KB277496                  6925 4 -     10329 AACG
i amaVit1.KB277496             I 11 C 0
s galGal4.chr1                  24067075 4 + 195276750 AATt
i galGal4.chr1                 I 2 I 4
s melGal1.chr1                  24928788 4 + 204065131 AATT
i melGal1.chr1                 I 2 I 4
s allMis1.JH737798                 79298 4 +    106177 AATT
i allMis1.JH737798             I 1 I 8
s cheMyd1.KB478633               2433109 4 +   6037886 GATG
i cheMyd1.KB478633             I 5 I 3
s chrPic2.chr2                  18523032 4 -  68452538 GATG
i chrPic2.chr2                 I 5 I 3
s anoCar2.chrUn_GL344195           43559 3 +     59083 -ATT
i anoCar2.chrUn_GL344195       I 9 I 4
e xenTro7.KB021649             165249894 0 + 215906545 C
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637 0 -       895 I
e astMex1.KB882082               3904411 0 -   8876373 C
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e falPer1.KB390921               1613136 0 +   3698665 I
e falChe1.KB398121               1475198 0 +   3546035 I
e anaPla1.KB742960                141378 0 +    531124 I
e apaSpi1.KB928558               3295625 0 -   3719163 I
e pelSin1.JH211373               2650239 0 -   4257854 I

a score=944351.000000
s hg38.chr8_KI270814v1_alt         78492 65 +    141812 TATC-TCAATC--TCATAGAATGGATCTACATTTGTCCTGTGTCAATGG---------CTATCCAGAAGCGGTAACT
s panTro4.chr8                  55025044 64 + 143986469 T-TC-TCAATT--TCGTAGGATGGCTCCACATTTGGCCTGTGCCAATGG---------CTGCCCAGAAGTGGTAACT
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59048061 65 + 153482349 TATC-TCAATC--TCATAGGATGGCTCTACATTTGGCCTGTGTCAATGG---------CTATCCAGAAGTGGTAACT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48121668 65 + 100215132 TATC-TCAATC--TCATAGGATGGCTCTACATTTGGCCTGTGTCAATGG---------CTATCCAGAAGTGGTAACT
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                  61692588 64 + 150158102 T-CC-TCAATT--TCGCAGGATGGCTCTACATTTGGCCTGTGCCAATGA---------CTGTCCAGAAGTCGTAACT
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366421 64 + 146850525 T-CC-TCAATT--TCGCAGGATGGCTCTACATTTGGCCTGTGCCAATGA---------CTGTCCAGAAGTGGTAACT
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53286958 64 + 139301422 T-CC-TCAATT--TCGCAGGATGGCTCTACATTTGGCCTGTGCCAATGA---------CTGTCCAGAAGTGGTAACT
i chlSab2.chr8                 C 0 C 0
s monDom5.chr8                 174684835 67 + 312544902 CATA-TTATTTTATTATAGGACACCTTTGCACCTGGCTTGTGCTAATGG---------ATATCCAGATGTTGTGTCC
i monDom5.chr8                 I 7 C 0
s sarHar1.chr5_GL861934_random     57006 67 -    124633 TCTG-TTATTTTGTTACAGAACACCTTTGCACCTAGCTTGTGCTAATGG---------ATATCCAGATGTTGTGTCC
i sarHar1.chr5_GL861934_random I 7 C 0
s macEug2.GL059506                  5861 65 +     21939 TCTC-TCATTT--CCATAGGACACCTCTACACCTGGCCTGTGCTAATGG---------ATATCCAGATGTTGTGTCT
i macEug2.GL059506             I 8 C 0
s ornAna1.Ultra479               3870913 64 -   6008416 T-GC-TACATT--TTATAGGACACCGTTGCACCTTGCCTGTGCCAAGGG---------ATTTCCAGAAGTTGTGAGT
i ornAna1.Ultra479             C 0 C 0
s colLiv1.KB375358               1019052 63 +   1462937 --ta-tttaat--ttttaggaCACCTCTGCATCTCGCCTGCGCGAATGG---------CCACGTGGCTGTTGTTACA
i colLiv1.KB375358             C 0 C 0
s falChe1.KB398074               4262850 63 -   7151304 --tg-tttaat--ttttaggACGCCTCTGCATCTCGCTTCTGCGAATGG---------CCATGTGAATGTTGTTACA
i falChe1.KB398074             T 646 C 0
s falPer1.KB391107               2215467 63 -   3101084 --tg-tttaat--ttttaggACGCCTCTGCATCTCGCTTCTGCGAATGG---------CCATGTGAATGTTGTTACA
i falPer1.KB391107             T 646 C 0
s ficAlb2.chr1A                 24320731 63 +  74947036 --ta-tttact--ttttaggACAGCTCTGCATCTTGCTTGTGCAAATGG---------CCACGTGGATATAGTTATG
i ficAlb2.chr1A                C 0 C 0
s zonAlb1.KB913045              12581457 63 +  16390125 --ta-tttaat--ttttaggaCGGCTCTGCATCTTGCTTGTGCAAATGG---------CCACGTGGATGTAGTTACA
i zonAlb1.KB913045             C 0 C 0
s geoFor1.JH739914               5157181 63 -   7168866 --ta-tttaat--ttttaggaCAGCTCTGCATCTTGCTTGTGCAAATGG---------CCATGTGGATGTAGTTACA
i geoFor1.JH739914             C 0 C 0
s taeGut2.chr1A                 23692116 63 +  73657157 --TA-TTTAAT--TTTTAGGACAGCTTTGCATCTTGCTTGTGCAAATGG---------CCATGTGGATGTCGTTACG
i taeGut2.chr1A                C 0 C 0
s pseHum1.KB221193               9788836 63 +  32995986 --ta-tttaat--ttttaggaCAGCTCTGCATCTTGCTTGTGCAAATGG---------CCATGTGGATGTAGTTATG
i pseHum1.KB221193             C 0 C 0
s melUnd1.JH556589               7679497 64 -   7952740 --TACTTTAAT--TTTTAGGACACCTCTGCATCTTGCTTGTGCAAACGG---------CCTTGCGGATGTTGTCACA
i melUnd1.JH556589             C 0 C 0
s amaVit1.KB277496                  6929 63 -     10329 --TG-TTTAAT--TTCTAGGACACCTCTGCATCTTGCTTGTGAGAATGG---------GCATGCAGATGTCGTTCGA
i amaVit1.KB277496             C 0 C 0
s galGal4.chr1                  24067083 63 + 195276750 --ca-tttaat--ttttaggACACCACTGCATCTTGCTTGTGCAAATGG---------ACATGCGGATGTCGTTACG
i galGal4.chr1                 I 4 C 0
s melGal1.chr1                  24928796 63 + 204065131 --CA-TTTAAT--TTTTAGGACACCACTGCATCTTGCTTGTGCAAATGG---------ACATGCGGATGTCGTTACG
i melGal1.chr1                 I 4 C 0
s allMis1.JH737798                 79310 63 +    106177 --TT-TTTATT--TTGTAGGACTCCTTTGCATTTGGCATGTGCAAATGG---------ACATCTAGATATTGTTTCC
i allMis1.JH737798             I 8 C 0
s cheMyd1.KB478633               2433116 63 +   6037886 --CA-TCTTAT--TTTTAGGACACCTTTGCATCTTGCCTGTGCTAATGG---------ACATTCAGATGTTGTTACT
i cheMyd1.KB478633             I 3 C 0
s chrPic2.chr2                  18523039 63 -  68452538 --CG-ACTTAT--TTTTAGGACACCTTTGCATCTTGCCTGTGCTAATGG---------GCATTTAGATGTCGTTACT
i chrPic2.chr2                 I 3 C 0
s anoCar2.chrUn_GL344195           43566 63 +     59083 --TG-CATTCT--TTTCAGAACACCTTTGCATTTTGCCTGCGCCAATGG---------ATGCATAGATGTTGTTACT
i anoCar2.chrUn_GL344195       I 4 C 0
s xenTro7.KB021649             165249894 67 + 215906545 -ATG-TTCCTC--TATGAGGGGGCTGCCATAT-----TTGTGCAACAGGAGTCTGTTACCAT-TAGAAGCTATAACT
i xenTro7.KB021649             C 0 I 73
s astMex1.KB882082               3904411 56 -   8876373 ----------T--TTGCAGAACTGCTTTACATGTAGCTTGCGTTCATGG---------ACATACAGAGGTGGTTCAG
i astMex1.KB882082             C 0 C 0
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e anaPla1.KB742960                141378  0 +    531124 I
e apaSpi1.KB928558               3295625  0 -   3719163 I
e pelSin1.JH211373               2650239  0 -   4257854 I

a score=1262347.000000
s hg38.chr8_KI270814v1_alt         78557 71 +    141812 TTGCTGGTGCACAGAAAGTGCCAGCTTAACGTGTGTGACGGTGAAAACACGACACCTCTGATGAAGATATA
s panTro4.chr8                  55025108 71 + 143986469 TTTCTGGTGCACAGAAAATGCCAGCTTAACATCCGTGACAGTGAAAACAAGACACCTCTAACGAAGGTATA
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59048126 71 + 153482349 TCGCTGGTGCACAGAAAGTGACAGCTTAACGTCTGTGACAGTGAAAACAGGACACCTCTGATGAAGATATA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48121733 71 + 100215132 TTGCTGGTGCACAGAAAGTGCCAGCTTAACGTCTGTGCCAGTGAAAACAGGACACCTCTTATGAAGATATA
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                  61692652 71 + 150158102 TTTCTGGTGCACAGAAAATACCAGCTTAACATCTGTGACAGTGAAAAGAAGACACTTCTAACGAAGGAATA
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366485 71 + 146850525 TTTCTGGTGCACAGAAAATGCCAGCTTACCATCTGTGACAGTGAAAAGAAGACACTTCTAACGAAGGAATA
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287022 71 + 139301422 TTTCTGGTGCACAGAAAATGCCAGCTTAACATCTGTGACAGTGAAAAGAAGACACTTCTAACAAAGGAATA
i chlSab2.chr8                 C 0 C 0
s monDom5.chr8                 174684902 71 + 312544902 CTCTTGGTGGAGAGGAAATGCAAATTAAATATTCGTGATAGTGAAAATAGATCTCCTTTGATTAAGGTATG
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861934_random     57073 71 -    124633 CTCTTAGtggagaaaaaatgcaaattaaatatttgtGACAGTGAAAATAGATCTCCTTTGATTAAGGTATG
i sarHar1.chr5_GL861934_random C 0 C 0
s macEug2.GL059506                  5926 71 +     21939 CTCTTGGTAGAGAGAAATTGTAAGCTGAATATGCGTGACAATGATAGTCAAACACCTTTAATTAAGGTATG
i macEug2.GL059506             C 0 C 0
s ornAna1.Ultra479               3870977 71 -   6008416 CTCTTAGTTGAAAATAAATGCAAACTGAACCTCTTTGACAGTGATAACCAATCTCCCCTGATGAAGGTAAG
i ornAna1.Ultra479             C 0 C 0
s colLiv1.KB375358               1019115 71 +   1462937 CATTTGGTAGAAAGCAAGTGTAAGCTAAATCTTCTTGACAGTGATAACAGATCACCCCTGATGAAGGTATG
i colLiv1.KB375358             C 0 C 0
s falChe1.KB398074               4262913 71 -   7151304 TATCTAGTGGAAAACAATTGTAAGTTAAATCTTACTGACGGTGATAACAGATCACCACTGATGAAGGTATG
i falChe1.KB398074             C 0 C 0
s falPer1.KB391107               2215530 71 -   3101084 TATCTAGTGGAAAACAATTGTAAGTTAAATCTTACTGACGGTGATAACAGATCACCACTGATGAAGGTATG
i falPer1.KB391107             C 0 C 0
s ficAlb2.chr1A                 24320794 71 +  74947036 TATCTAGTAGAAAACAAGTGTAAGCTAAATCTTTTTGACAATGATAACAGATCGCCACTGATGAAGGTACG
i ficAlb2.chr1A                C 0 C 0
s zonAlb1.KB913045              12581520 71 +  16390125 TTTCTAGTAGAAAACAAGTGCAAGCTAAATCTTTTTGACAATGATAACAGATCACCACTGATGAAGGTACG
i zonAlb1.KB913045             C 0 C 0
s geoFor1.JH739914               5157244 71 -   7168866 TTTCTAGTAGAAAACAAGTGTAAGCTAAATCTTTTTGACAATGATAACAGATCACCACTGATGAAGGTACG
i geoFor1.JH739914             C 0 C 0
s taeGut2.chr1A                 23692179 71 +  73657157 TTTCTAGTAGAAAACAAATGTAAGCTCAATCTCTTTGACAATGATAACAGGTCACCACTGATGAAGGTACG
i taeGut2.chr1A                C 0 C 0
s pseHum1.KB221193               9788899 71 +  32995986 TATCTAGTAGAAAACAAGTGTAAGCTAAATCTTTTTGACAATGATAACAGAACGCCACTGATGAAGGTACG
i pseHum1.KB221193             C 0 C 0
s melUnd1.JH556589               7679561 71 -   7952740 TACCTCATAGAAAACAAGTGTGAGTTAAATCTTGTTGACAATGGTAACAGATGGCCACTGATGAAGGTATG
i melUnd1.JH556589             C 0 C 0
s amaVit1.KB277496                  6992 71 -     10329 TTTCTGGCAGAAAATCAGTGCCACCTAGACCCTTGtgacaaagacaagaaaacGCCACTGATGAGGGTACG
i amaVit1.KB277496             C 0 C 0
s galGal4.chr1                  24067146 71 + 195276750 TTTCTAGTAGAAAGCAAGTGTAAGCTAAATCTTTTTGACAATGATAACAGATCACCACTGATGAAGGTAAG
i galGal4.chr1                 C 0 C 0
s melGal1.chr1                  24928859 71 + 204065131 TTTCTAGTAGAAAACAAGTGTAAGCTAAATGTTTTTGACAGTGATAACAGATCACCACTGATGAAGGTAAG
i melGal1.chr1                 C 0 C 0
s allMis1.JH737798                 79373 71 +    106177 TATTTAATTGAGAACAAGTGCAAGCTAAATCTCTGTGACAACGATAGCAGGTCACCATTAATGAAGGTATG
i allMis1.JH737798             C 0 C 0
s cheMyd1.KB478633               2433179 71 +   6037886 TATTTAGTGGACAACAAGTGCAAACTAAATCTGTGTGACAATGATAACAGATCCCCGTTGATGAAGGTATG
i cheMyd1.KB478633             C 0 C 0
s chrPic2.chr2                  18523102 71 -  68452538 TACTTAGTGGACAACAAGTGCAAACTAAATCTGTGTGACAATGATAACAGATCCCCGTTGATGAAGGTATG
i chrPic2.chr2                 C 0 C 0
s anoCar2.chrUn_GL344195           43629 71 +     59083 TTTTTAGTAAGCAACCAATGCCAGCTAGATCTCTACGATAGTGATACAAGAACTCCATTAATGAAGGTATG
i anoCar2.chrUn_GL344195       C 0 C 0
s astMex1.KB882082               3904467 70 -   8876373 TTTTTGGTGGAAAGTAAAGTCAAGCTCAACTTATGTGACAATCAAAACCGCTCCGCCTTAATGAAGGTAT-
i astMex1.KB882082             C 0 C 0
e xenTro7.KB021649             165249961 73 + 215906545 I
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e anaPla1.KB742960                141378  0 +    531124 I
e apaSpi1.KB928558               3295625  0 -   3719163 I
e pelSin1.JH211373               2650239  0 -   4257854 I

a score=-149856.000000
s hg38.chr8_KI270814v1_alt         78628  9 +    141812 -----TAGTAGC--C-A
s panTro4.chr8                  55025179  9 + 143986469 -----TAGTAGC--C-A
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59048197  9 + 153482349 -----TAGTAGC--C-A
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48121804  9 + 100215132 -----TAGTAGC--C-A
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                  61692723  9 + 150158102 -----TAGTAGC--C-A
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366556  9 + 146850525 -----TAGTAGC--C-A
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287093  9 + 139301422 -----TAGTAGC--C-A
i chlSab2.chr8                 C 0 C 0
s monDom5.chr8                 174684973  9 + 312544902 -----TATGACT--T-A
i monDom5.chr8                 C 0 I 1
s sarHar1.chr5_GL861934_random     57144  7 -    124633 -----C-TTAGT--T--
i sarHar1.chr5_GL861934_random C 0 C 0
s macEug2.GL059506                  5997  9 +     21939 -----CATTAGT--T-A
i macEug2.GL059506             C 0 C 0
s ornAna1.Ultra479               3871048  5 -   6008416 -----TA----C--C-A
i ornAna1.Ultra479             C 0 C 0
s colLiv1.KB375358               1019186  8 +   1462937 -----TGGAATA--C--
i colLiv1.KB375358             C 0 C 0
s falChe1.KB398074               4262984  8 -   7151304 -----TGGAATA--T--
i falChe1.KB398074             C 0 C 0
s falPer1.KB391107               2215601  8 -   3101084 -----TGGAATA--T--
i falPer1.KB391107             C 0 C 0
s ficAlb2.chr1A                 24320865  8 +  74947036 -----TGGATTA--T--
i ficAlb2.chr1A                C 0 C 0
s zonAlb1.KB913045              12581591  8 +  16390125 -----TAGACTA--T--
i zonAlb1.KB913045             C 0 C 0
s geoFor1.JH739914               5157315  8 -   7168866 -----TGGACTA--T--
i geoFor1.JH739914             C 0 C 0
s taeGut2.chr1A                 23692250  8 +  73657157 -----TGGACTA--T--
i taeGut2.chr1A                C 0 C 0
s pseHum1.KB221193               9788970  8 +  32995986 -----TGGACTA--T--
i pseHum1.KB221193             C 0 C 0
s melUnd1.JH556589               7679632  8 -   7952740 -----TGGAATA--T--
i melUnd1.JH556589             C 0 C 0
s amaVit1.KB277496                  7063  8 -     10329 -----TGGAAAA--T--
i amaVit1.KB277496             C 0 C 0
s galGal4.chr1                  24067217  8 + 195276750 -----TAGAACA--T--
i galGal4.chr1                 C 0 C 0
s melGal1.chr1                  24928930  8 + 204065131 -----TAGAACA--T--
i melGal1.chr1                 C 0 C 0
s allMis1.JH737798                 79444 10 +    106177 -----TAGAATACTT--
i allMis1.JH737798             C 0 C 0
s cheMyd1.KB478633               2433250  8 +   6037886 -----CACAGTA--T--
i cheMyd1.KB478633             C 0 C 0
s chrPic2.chr2                  18523173  8 -  68452538 -----CACAGTA--T--
i chrPic2.chr2                 C 0 C 0
s anoCar2.chrUn_GL344195           43700  9 +     59083 -----TATGAGA--CA-
i anoCar2.chrUn_GL344195       C 0 I 256
s xenTro7.KB021649             165250034  6 + 215906545 -----TGAAAA------
i xenTro7.KB021649             I 73 C 0
s astMex1.KB882082               3904537  7 -   8876373 GGCTCTG----------
i astMex1.KB882082             C 0 C 0
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e anaPla1.KB742960                141378  0 +    531124 I
e apaSpi1.KB928558               3295625  0 -   3719163 I
e pelSin1.JH211373               2650239  0 -   4257854 I

a score=38967.000000
s hg38.chr8_KI270814v1_alt         78637 5 +    141812 GTTAT
s panTro4.chr8                  55025188 5 + 143986469 GTTCT
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59048206 5 + 153482349 GTTAT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48121813 5 + 100215132 GTTAT
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                  61692732 5 + 150158102 GTTCT
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366565 5 + 146850525 GTTCT
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287102 5 + 139301422 GTTCT
i chlSab2.chr8                 C 0 C 0
s monDom5.chr8                 174684983 5 + 312544902 GTTAA
i monDom5.chr8                 I 1 C 0
s macEug2.GL059506                  6006 5 +     21939 ACCAA
i macEug2.GL059506             C 0 C 0
s ornAna1.Ultra479               3871053 3 -   6008416 --TGA
i ornAna1.Ultra479             C 0 C 0
s colLiv1.KB375358               1019194 5 +   1462937 GTTAT
i colLiv1.KB375358             C 0 C 0
s falChe1.KB398074               4262992 5 -   7151304 GTTAT
i falChe1.KB398074             C 0 C 0
s falPer1.KB391107               2215609 5 -   3101084 GTTAT
i falPer1.KB391107             C 0 C 0
s ficAlb2.chr1A                 24320873 5 +  74947036 GGTAT
i ficAlb2.chr1A                C 0 C 0
s zonAlb1.KB913045              12581599 5 +  16390125 GGTAT
i zonAlb1.KB913045             C 0 C 0
s geoFor1.JH739914               5157323 5 -   7168866 GATAT
i geoFor1.JH739914             C 0 C 0
s taeGut2.chr1A                 23692258 5 +  73657157 AGTAT
i taeGut2.chr1A                C 0 C 0
s pseHum1.KB221193               9788978 5 +  32995986 GGTAT
i pseHum1.KB221193             C 0 C 0
s melUnd1.JH556589               7679640 5 -   7952740 GTTAC
i melUnd1.JH556589             C 0 C 0
s amaVit1.KB277496                  7071 5 -     10329 GTTCT
i amaVit1.KB277496             C 0 C 0
s galGal4.chr1                  24067225 5 + 195276750 GTTAT
i galGal4.chr1                 C 0 C 0
s melGal1.chr1                  24928938 5 + 204065131 GTTAT
i melGal1.chr1                 C 0 C 0
s allMis1.JH737798                 79454 5 +    106177 GTTAT
i allMis1.JH737798             C 0 C 0
s cheMyd1.KB478633               2433258 5 +   6037886 TTAAT
i cheMyd1.KB478633             C 0 C 0
s chrPic2.chr2                  18523181 5 -  68452538 TTAAT
i chrPic2.chr2                 C 0 C 0
s xenTro7.KB021649             165250040 3 + 215906545 --ATT
i xenTro7.KB021649             C 0 C 0
s astMex1.KB882082               3904544 5 -   8876373 TGTAT
i astMex1.KB882082             C 0 C 0
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e anoCar2.chrUn_GL344195           43709 256 +     59083 I
e sarHar1.chr5_GL861934_random     57151 0 -    124633 C
e anaPla1.KB742960                141378 0 +    531124 I
e apaSpi1.KB928558               3295625 0 -   3719163 I
e pelSin1.JH211373               2650239 0 -   4257854 I

a score=-13062.000000
s hg38.chr8_KI270814v1_alt         78642 17 +    141812 TT--CAGC--ATGAGATGGAT
s panTro4.chr8                  55025193 17 + 143986469 TT--CAGC--ATGAGATGGAT
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59048211 17 + 153482349 TT--CAGC--ATGAGATGGAT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48121818 17 + 100215132 TT--CAGC--ATGAGATGGAT
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                  61692737 17 + 150158102 TT--CAGC--ATGAGATGGAT
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366570 17 + 146850525 TT--CAGC--ATGAGATGGAT
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287107 17 + 139301422 TT--CAGC--ATGAGATGGAT
i chlSab2.chr8                 C 0 C 0
s monDom5.chr8                 174684988 14 + 312544902 AT--T-----ATGAAGTGTCA
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861934_random     57151 11 -    124633 ----------ATAAACTGCAT
i sarHar1.chr5_GL861934_random C 0 C 0
s macEug2.GL059506                  6011 19 +     21939 AT--TGGTCAATGAAATGCAT
i macEug2.GL059506             C 0 C 0
s ornAna1.Ultra479               3871056 17 -   6008416 GT--CTGT--ATGAAATGTAT
i ornAna1.Ultra479             C 0 I 465
s colLiv1.KB375358               1019199 17 +   1462937 GT--GCTT--GTAAGTGGGGC
i colLiv1.KB375358             C 0 C 0
s falChe1.KB398074               4262997 17 -   7151304 AC--TCTT--GTAAGTGGGAC
i falChe1.KB398074             C 0 C 0
s falPer1.KB391107               2215614 17 -   3101084 AC--TCTT--GTAAGTGGGAC
i falPer1.KB391107             C 0 C 0
s ficAlb2.chr1A                 24320878 17 +  74947036 AT--TCTT--GCAAGTGAGAC
i ficAlb2.chr1A                C 0 C 0
s zonAlb1.KB913045              12581604 17 +  16390125 GT--TCTT--GCAAGTGAGAC
i zonAlb1.KB913045             C 0 C 0
s geoFor1.JH739914               5157328 17 -   7168866 GT--TCTT--GCAAGTGAGAC
i geoFor1.JH739914             C 0 C 0
s taeGut2.chr1A                 23692263 17 +  73657157 GT--TCTT--GCAAGCGAGAC
i taeGut2.chr1A                C 0 C 0
s pseHum1.KB221193               9788983 17 +  32995986 GT--TCTT--GCAAGTGAGGT
i pseHum1.KB221193             C 0 C 0
s melUnd1.JH556589               7679645 17 -   7952740 GT--TCTT--GTAAGTGGAGC
i melUnd1.JH556589             C 0 C 0
s amaVit1.KB277496                  7076 17 -     10329 GC--TGTT--GTATGTTGGGC
i amaVit1.KB277496             C 0 C 0
s galGal4.chr1                  24067230 17 + 195276750 GC--TGCT--GCAACTAGGAA
i galGal4.chr1                 C 0 C 0
s melGal1.chr1                  24928943 17 + 204065131 GC--CGCT--GCAAGTAGGAA
i melGal1.chr1                 C 0 C 0
s allMis1.JH737798                 79459 17 +    106177 GA--TTGT--GCCAGATGTAT
i allMis1.JH737798             C 0 C 0
s cheMyd1.KB478633               2433263 19 +   6037886 GCAGTTAT--GTAAGATGTAC
i cheMyd1.KB478633             C 0 C 0
s chrPic2.chr2                  18523186 19 -  68452538 GCAGTTAT--GTAAGATGTAC
i chrPic2.chr2                 C 0 C 0
s xenTro7.KB021649             165250043 17 + 215906545 AT--CAAC--ATGACTTACAG
i xenTro7.KB021649             C 0 I 11
s astMex1.KB882082               3904549 13 -   8876373 ------TT--AAgaatcagta
i astMex1.KB882082             C 0 C 0
s lepOcu1.chrLG8                10772866 17 +  50348508 tt--cccc--atgaccctgaa
i lepOcu1.chrLG8               N 0 C 0
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e anoCar2.chrUn_GL344195           43709 256 +     59083 I
e anaPla1.KB742960                141378  0 +    531124 I
e apaSpi1.KB928558               3295625  0 -   3719163 I
e pelSin1.JH211373               2650239  0 -   4257854 I

a score=-109469.000000
s hg38.chr8_KI270814v1_alt         78659  5 +    141812 TT--G--------------GT----
s panTro4.chr8                  55025210  5 + 143986469 TT--G--------------GC----
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59048228  5 + 153482349 TT--G--------------GT----
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48121835  5 + 100215132 AT--G--------------GT----
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                  61692754  5 + 150158102 TT--G--------------GC----
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366587  5 + 146850525 TT--G--------------GC----
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287124  5 + 139301422 TT--G--------------GC----
i chlSab2.chr8                 C 0 C 0
s monDom5.chr8                 174685002  5 + 312544902 CC--T--------------AT----
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861934_random     57162  5 -    124633 TC--T--------------AT----
i sarHar1.chr5_GL861934_random C 0 C 0
s macEug2.GL059506                  6030 19 +     21939 TT--TAATTTTTTTCTTTGAT----
i macEug2.GL059506             C 0 C 0
s colLiv1.KB375358               1019216  4 +   1462937 -T--T--------------AT----
i colLiv1.KB375358             C 0 C 0
s falChe1.KB398074               4263014  4 -   7151304 -T--T--------------GT----
i falChe1.KB398074             C 0 C 0
s falPer1.KB391107               2215631  4 -   3101084 -T--T--------------GT----
i falPer1.KB391107             C 0 C 0
s ficAlb2.chr1A                 24320895  4 +  74947036 -T--T--------------AC----
i ficAlb2.chr1A                C 0 C 0
s zonAlb1.KB913045              12581621  4 +  16390125 -T--T--------------AC----
i zonAlb1.KB913045             C 0 C 0
s geoFor1.JH739914               5157345  4 -   7168866 -T--T--------------AC----
i geoFor1.JH739914             C 0 C 0
s taeGut2.chr1A                 23692280  4 +  73657157 -G--T--------------AC----
i taeGut2.chr1A                C 0 C 0
s pseHum1.KB221193               9789000  4 +  32995986 -T--T--------------AC----
i pseHum1.KB221193             C 0 C 0
s melUnd1.JH556589               7679662  4 -   7952740 -T--T--------------AT----
i melUnd1.JH556589             C 0 C 0
s amaVit1.KB277496                  7093  4 -     10329 -T--A--------------TT----
i amaVit1.KB277496             C 0 C 0
s galGal4.chr1                  24067247  4 + 195276750 -T--T--------------AT----
i galGal4.chr1                 C 0 C 0
s melGal1.chr1                  24928960  4 + 204065131 -T--T--------------AT----
i melGal1.chr1                 C 0 C 0
s allMis1.JH737798                 79476  6 +    106177 -CAGT--------------AT----
i allMis1.JH737798             C 0 C 0
s cheMyd1.KB478633               2433282  4 +   6037886 -T--A--------------AT----
i cheMyd1.KB478633             C 0 I 79
s chrPic2.chr2                  18523205  4 -  68452538 -T--G--------------AT----
i chrPic2.chr2                 C 0 I 85
s xenTro7.KB021649             165250071  2 + 215906545 TT-----------------------
i xenTro7.KB021649             I 11 C 0
s astMex1.KB882082               3904562  3 -   8876373 --------------------tat--
i astMex1.KB882082             C 0 C 0
s lepOcu1.chrLG8                10772883  5 +  50348508 --------------------ttgga
i lepOcu1.chrLG8               C 0 I 5
e ornAna1.Ultra479               3871073 465 -   6008416 I
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e anoCar2.chrUn_GL344195           43709 256 +     59083 I
e anaPla1.KB742960                141378  0 +    531124 I
e apaSpi1.KB928558               3295625  0 -   3719163 I
e pelSin1.JH211373               2650239  0 -   4257854 I

a score=2185.000000
s hg38.chr8_KI270814v1_alt         78664 1 +    141812 T
s panTro4.chr8                  55025215 1 + 143986469 T
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59048233 1 + 153482349 T
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48121840 1 + 100215132 T
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                  61692759 1 + 150158102 T
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366592 1 + 146850525 T
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287129 1 + 139301422 T
i chlSab2.chr8                 C 0 C 0
s monDom5.chr8                 174685007 1 + 312544902 T
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861934_random     57167 1 -    124633 G
i sarHar1.chr5_GL861934_random C 0 C 0
s macEug2.GL059506                  6049 1 +     21939 C
i macEug2.GL059506             C 0 C 0
s danRer10.chr6                  4023759 1 -  60272633 T
i danRer10.chr6                N 0 C 0
s astMex1.KB882082               3904565 1 -   8876373 t
i astMex1.KB882082             C 0 C 0
s lepOcu1.chrLG8                10772893 1 +  50348508 c
i lepOcu1.chrLG8               I 5 C 0
e xenTro7.KB021649             165250073 0 + 215906545 C
e ornAna1.Ultra479               3871073 465 -   6008416 I
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chr1A                 24320899 0 +  74947036 C
e anoCar2.chrUn_GL344195           43709 256 +     59083 I
e pseHum1.KB221193               9789004 0 +  32995986 C
e zonAlb1.KB913045              12581625 0 +  16390125 C
e colLiv1.KB375358               1019220 0 +   1462937 C
e allMis1.JH737798                 79482 0 +    106177 C
e falPer1.KB391107               2215635 0 -   3101084 C
e falChe1.KB398074               4263018 0 -   7151304 C
e galGal4.chr1                  24067251 0 + 195276750 C
e geoFor1.JH739914               5157349 0 -   7168866 C
e melGal1.chr1                  24928964 0 + 204065131 C
e anaPla1.KB742960                141378 0 +    531124 I
e amaVit1.KB277496                  7097 0 -     10329 C
e apaSpi1.KB928558               3295625 0 -   3719163 I
e cheMyd1.KB478633               2433286 79 +   6037886 I
e chrPic2.chr2                  18523209 85 -  68452538 I
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7679666 0 -   7952740 C
e taeGut2.chr1A                 23692284 0 +  73657157 C

a score=1971.000000
s hg38.chr8_KI270814v1_alt         78665 5 +    141812 TAAAT
s panTro4.chr8                  55025216 5 + 143986469 TAAAT
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59048234 5 + 153482349 TAAAT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48121841 5 + 100215132 TAAAT
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                  61692760 5 + 150158102 TAAAT
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366593 5 + 146850525 TAAAT
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287130 5 + 139301422 TAAAT
i chlSab2.chr8                 C 0 C 0
s monDom5.chr8                 174685008 4 + 312544902 TAGA-
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861934_random     57168 4 -    124633 GAGA-
i sarHar1.chr5_GL861934_random C 0 C 0
s macEug2.GL059506                  6050 4 +     21939 AAGA-
i macEug2.GL059506             C 0 C 0
s colLiv1.KB375358               1019220 5 +   1462937 TGATT
i colLiv1.KB375358             C 0 I 45
s falChe1.KB398074               4263018 5 -   7151304 CAACT
i falChe1.KB398074             C 0 I 23
s falPer1.KB391107               2215635 5 -   3101084 CAACT
i falPer1.KB391107             C 0 I 23
s ficAlb2.chr1A                 24320899 5 +  74947036 TGATT
i ficAlb2.chr1A                C 0 I 45
s zonAlb1.KB913045              12581625 5 +  16390125 TGATT
i zonAlb1.KB913045             C 0 I 45
s geoFor1.JH739914               5157349 5 -   7168866 TGACT
i geoFor1.JH739914             C 0 I 112
s taeGut2.chr1A                 23692284 5 +  73657157 TGCTT
i taeGut2.chr1A                C 0 I 45
s pseHum1.KB221193               9789004 5 +  32995986 TTATT
i pseHum1.KB221193             C 0 I 7
s melUnd1.JH556589               7679666 5 -   7952740 TGATT
i melUnd1.JH556589             C 0 I 45
s amaVit1.KB277496                  7097 5 -     10329 CGCTT
i amaVit1.KB277496             C 0 I 47
s galGal4.chr1                  24067251 5 + 195276750 TTCTT
i galGal4.chr1                 C 0 I 4
s melGal1.chr1                  24928964 5 + 204065131 TGATT
i melGal1.chr1                 C 0 I 4
s allMis1.JH737798                 79482 5 +    106177 TAATT
i allMis1.JH737798             C 0 I 32
s cheMyd1.KB478633               2433365 5 +   6037886 TATAT
i cheMyd1.KB478633             I 79 I 1
s chrPic2.chr2                  18523294 5 -  68452538 TATAT
i chrPic2.chr2                 I 85 I 1
s apaSpi1.KB929668               5961204 5 -  12308914 TACAT
i apaSpi1.KB929668             T 314 I 1
s xenTro7.KB021649             165250073 5 + 215906545 TAAAT
i xenTro7.KB021649             C 0 C 0
s danRer10.chr6                  4023760 5 -  60272633 TATAT
i danRer10.chr6                C 0 C 0
s astMex1.KB882082               3904566 5 -   8876373 taatt
i astMex1.KB882082             C 0 C 0
s lepOcu1.chrLG8                10772894 5 +  50348508 tagaa
i lepOcu1.chrLG8               C 0 C 0
e ornAna1.Ultra479               3871073 465 -   6008416 I
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e anoCar2.chrUn_GL344195           43709 256 +     59083 I
e anaPla1.KB742960                141378 0 +    531124 I
e pelSin1.JH211373               2650239 0 -   4257854 I

a score=-16632.000000
s hg38.chr8_KI270814v1_alt         78670 2 +    141812 -AC
s panTro4.chr8                  55025221 2 + 143986469 -AC
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59048239 2 + 153482349 -AC
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48121846 2 + 100215132 -GC
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                  61692765 2 + 150158102 -AC
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366598 2 + 146850525 -AC
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287135 2 + 139301422 -AT
i chlSab2.chr8                 C 0 C 0
s cheMyd1.KB478633               2433371 1 +   6037886 -A-
i cheMyd1.KB478633             I 1 C 0
s chrPic2.chr2                  18523300 1 -  68452538 -A-
i chrPic2.chr2                 I 1 C 0
s apaSpi1.KB929668               5961210 1 -  12308914 -A-
i apaSpi1.KB929668             I 1 C 0
s xenTro7.KB021649             165250078 2 + 215906545 -GC
i xenTro7.KB021649             C 0 C 0
s danRer10.chr6                  4023765 2 -  60272633 AA-
i danRer10.chr6                C 0 C 0
s astMex1.KB882082               3904571 2 -   8876373 at-
i astMex1.KB882082             C 0 C 0
s lepOcu1.chrLG8                10772899 2 +  50348508 aa-
i lepOcu1.chrLG8               C 0 C 0
e ornAna1.Ultra479               3871073 465 -   6008416 I
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chr1A                 24320904 45 +  74947036 I
e anoCar2.chrUn_GL344195           43709 256 +     59083 I
e pseHum1.KB221193               9789009 7 +  32995986 I
e zonAlb1.KB913045              12581630 45 +  16390125 I
e colLiv1.KB375358               1019225 45 +   1462937 I
e allMis1.JH737798                 79487 32 +    106177 I
e falPer1.KB391107               2215640 23 -   3101084 I
e falChe1.KB398074               4263023 23 -   7151304 I
e macEug2.GL059506                  6054 0 +     21939 C
e galGal4.chr1                  24067256 4 + 195276750 I
e geoFor1.JH739914               5157354 112 -   7168866 I
e sarHar1.chr5_GL861934_random     57172 0 -    124633 C
e melGal1.chr1                  24928969 4 + 204065131 I
e anaPla1.KB742960                141378 0 +    531124 I
e amaVit1.KB277496                  7102 47 -     10329 I
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7679671 45 -   7952740 I
e monDom5.chr8                 174685012 0 + 312544902 C
e taeGut2.chr1A                 23692289 45 +  73657157 I

a score=329.000000
s hg38.chr8_KI270814v1_alt         78672 3 +    141812 ATA-
s panTro4.chr8                  55025223 3 + 143986469 ATA-
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59048241 3 + 153482349 ATA-
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48121848 3 + 100215132 ATA-
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                  61692767 3 + 150158102 ATA-
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366600 3 + 146850525 ATA-
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287137 3 + 139301422 ATA-
i chlSab2.chr8                 C 0 C 0
s cheMyd1.KB478633               2433372 3 +   6037886 ACA-
i cheMyd1.KB478633             C 0 I 16
s chrPic2.chr2                  18523301 3 -  68452538 ACA-
i chrPic2.chr2                 C 0 I 16
s apaSpi1.KB929668               5961211 3 -  12308914 ACA-
i apaSpi1.KB929668             C 0 I 15
s anoCar2.chrUn_GL344195           43965 3 +     59083 aga-
i anoCar2.chrUn_GL344195       I 256 I 15
s danRer10.chr6                  4023767 3 -  60272633 -TAA
i danRer10.chr6                C 0 C 0
s astMex1.KB882082               3904573 3 -   8876373 -taa
i astMex1.KB882082             C 0 C 0
s lepOcu1.chrLG8                10772901 3 +  50348508 -taa
i lepOcu1.chrLG8               C 0 C 0
e xenTro7.KB021649             165250080 0 + 215906545 C
e ornAna1.Ultra479               3871073 465 -   6008416 I
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chr1A                 24320904 45 +  74947036 I
e pseHum1.KB221193               9789009 7 +  32995986 I
e zonAlb1.KB913045              12581630 45 +  16390125 I
e colLiv1.KB375358               1019225 45 +   1462937 I
e allMis1.JH737798                 79487 32 +    106177 I
e falPer1.KB391107               2215640 23 -   3101084 I
e falChe1.KB398074               4263023 23 -   7151304 I
e macEug2.GL059506                  6054 0 +     21939 C
e galGal4.chr1                  24067256 4 + 195276750 I
e geoFor1.JH739914               5157354 112 -   7168866 I
e sarHar1.chr5_GL861934_random     57172 0 -    124633 C
e melGal1.chr1                  24928969 4 + 204065131 I
e anaPla1.KB742960                141378 0 +    531124 I
e amaVit1.KB277496                  7102 47 -     10329 I
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7679671 45 -   7952740 I
e monDom5.chr8                 174685012 0 + 312544902 C
e taeGut2.chr1A                 23692289 45 +  73657157 I

a score=-216007.000000
s hg38.chr8_KI270814v1_alt         78675 20 +    141812 GAATAAA----AAT------------GGA-TTTATTT
s panTro4.chr8                  55025226 20 + 143986469 GAATAAA----AAT------------GAA-TTTGTCT
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59048244 20 + 153482349 GAATAAA----AAT------------GAA-TTTATTT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48121851 20 + 100215132 GAATAAA----AAT------------GAA-TTTATTT
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                  61692770 20 + 150158102 GAATAAA----AAT------------GAA-TTTGTCT
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366603 20 + 146850525 GAATAAA----AAT------------GAA-TTTGTCT
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287140 20 + 139301422 GAATAAA----AAT------------GAA-TTTGTCT
i chlSab2.chr8                 C 0 C 0
s macEug2.GL059506                  6054 18 +     21939 AAATATG----CTT------------TA---TTAACC
i macEug2.GL059506             C 0 C 0
s ornAna1.Ultra479               3871538 20 -   6008416 GACTAGA----AAT------------ATC-TATATTT
i ornAna1.Ultra479             I 465 C 0
s colLiv1.KB375358               1019270 16 +   1462937 GTAGAAA----CAT------------GCA-TAT----
i colLiv1.KB375358             I 45 I 79
s falChe1.KB398074               4263046 13 -   7151304 GGAGGAT----TCT------------TTA--------
i falChe1.KB398074             I 23 I 79
s falPer1.KB391107               2215663 13 -   3101084 GGAGGAT----TCT------------TTA--------
i falPer1.KB391107             I 23 I 79
s ficAlb2.chr1A                 24320949 16 +  74947036 GTAAAAT----CAT------------GCA-TAT----
i ficAlb2.chr1A                I 45 I 75
s zonAlb1.KB913045              12581675 16 +  16390125 GTAAAAT----CAC------------GCA-TAT----
i zonAlb1.KB913045             I 45 I 51
s taeGut2.chr1A                 23692334 16 +  73657157 GTAAAAT----CAT------------GCA-TAT----
i taeGut2.chr1A                I 45 I 52
s pseHum1.KB221193               9789016 13 +  32995986 ---aaat----tat------------gta-ttt----
i pseHum1.KB221193             I 7 I 93
s melUnd1.JH556589               7679716 16 -   7952740 GTAGAAC----CAC------------CTA-TAT----
i melUnd1.JH556589             I 45 I 52
s amaVit1.KB277496                  7149 15 -     10329 ATAAAA-----CAG------------GTA-TGT----
i amaVit1.KB277496             I 47 I 52
s galGal4.chr1                  24067260 16 + 195276750 ATTAAAT----GAT------------GTC-TTT----
i galGal4.chr1                 I 4 I 91
s melGal1.chr1                  24928973 20 + 204065131 ACTAAATGGTGGAT------------GTC-TTT----
i melGal1.chr1                 I 4 I 91
s allMis1.JH737798                 79519 28 +    106177 ATAGGAA----CATAAGTTGGTGTTAGCA-TTT----
i allMis1.JH737798             I 32 I 67
s cheMyd1.KB478633               2433391 16 +   6037886 ttttatt----tat------------taa-ttt----
i cheMyd1.KB478633             I 16 I 10
s chrPic2.chr2                  18523320 16 -  68452538 ttttatt----tat------------taa-ttt----
i chrPic2.chr2                 I 16 I 10
s apaSpi1.KB929668               5961229 16 -  12308914 Ttttact----cat------------taa-ttt----
i apaSpi1.KB929668             I 15 I 10
s anoCar2.chrUn_GL344195           43983  5 +     59083 gaaga--------------------------------
i anoCar2.chrUn_GL344195       I 15 I 23
s xenTro7.KB021649             165250080 15 + 215906545 -AACAAG----AGT------------AGG-TTT----
i xenTro7.KB021649             C 0 I 15
s danRer10.chr6                  4023770 15 -  60272633 -AATAAA----ATT------------ACA-ATT----
i danRer10.chr6                C 0 C 0
s astMex1.KB882082               3904576 17 -   8876373 gaatcag----tat------------atatatt----
i astMex1.KB882082             C 0 C 0
s lepOcu1.chrLG8                10772904  3 +  50348508 ------------------------------atg----
i lepOcu1.chrLG8               C 0 C 0
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e geoFor1.JH739914               5157354 112 -   7168866 I
e sarHar1.chr5_GL861934_random     57172  0 -    124633 C
e anaPla1.KB742960                141378  0 +    531124 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e monDom5.chr8                 174685012  0 + 312544902 C

a score=-964750.000000
s hg38.chr8_KI270814v1_alt         78695 73 +    141812 CA--TTGAAATG-----------TAACTAAT--------T-TGTG---AACCTA-TGGAATATTTATT-TGTATTTTC-----------TAGAAT--TTACAATGTGTTTC--TT
s panTro4.chr8                  55025246 74 + 143986469 CA--TTGAAATA-----------TAACTAGT--------T-TGTG--AAACCTG-TGGAATACTTATT-TTAATTTCC-----------TACAAT--TTACAATTTATTTC--TT
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59048264 74 + 153482349 CA--TTGAAATA-----------TAACTAAT--------T-TGTG--AAACCTA-CGGAATATTTATT-TGTATTTTC-----------TAGAAT--TTACAATGTATTTC--TT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48121871 74 + 100215132 CA--TTGAAATA-----------TAACTAAT--------T-TGTG--AAACCTA-TGGAATATTTATT-TGTATTTTC-----------TAGAAT--TTACAATGTATTTC--TT
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                  61692790 73 + 150158102 CA--TTGAAATA-----------TAACTAGT--------T-TGTG---AACCTG-TGGAATATTTATT-TTGATTTCC-----------TACAAT--TTACGATTTATTTC--TT
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366623 74 + 146850525 CA--TTGAAATA-----------TAACTAGT--------T-TGTG--AAACCTG-TGGAATATTTATT-TTGATTTCC-----------TACAAT--TTACGATTTATTTC--TT
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287160 74 + 139301422 CA--TTGAAATA-----------TAACTAGT--------T-TGTG--AAACCTG-TGGAATACTTCGT-TTGATTTCC-----------TACAAT--TTACGATTTATTTC--TT
i chlSab2.chr8                 C 0 C 0
s monDom5.chr8                 174685012 55 + 312544902 ----TTTAAA------------------CTT--------T-------AAATCTT-TAGAATACAAAAT-TA--AGTTT-----------CAGGAC------TCACGGTCTC--TT
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861934_random     57172 53 -    124633 TA--TCCAAA------------------AAT--------T-------AAATCTT-CAGCATATAAAGT-TGCCAAACT-----------TAGAAT------------CTCT--TT
i sarHar1.chr5_GL861934_random C 0 C 0
s macEug2.GL059506                  6072 69 +     21939 TA--TTCAAATA-----------TCACTAAT--------T-------ATGTTTT-AGTAAACTAAATT-TTATA---T-----------TAGAATATTTGTTATCCGTTTT--TC
i macEug2.GL059506             C 0 C 0
s ornAna1.Ultra479               3871558 61 -   6008416 GA--TCT--CTC-----------TTACTGTC--------T-TTTG--AA--------------CTAGT-CTGGGCTTA-----------CTTAAT--GTAGAATCTAATTCCGTT
i ornAna1.Ultra479             C 0 C 0
s colLiv1.KB375358               1019365 67 +   1462937 TT--TTCCAGCA-----------TTGGGAAG--------C-TGGG--GGAATGG-TAACAGAGTGAAA-TGTAAACGC-----------TGGAAG--TTTTCCC--T-------T
i colLiv1.KB375358             I 79 C 0
s falChe1.KB398074               4263138 55 -   7151304 TT--TTCCAGCA-----------TTGGGAAG--------C-TGGG--GTAGTTG-CAACAGA------------CTGC-----------TGGAAG--TTCTTCC----------T
i falChe1.KB398074             I 79 C 0
s falPer1.KB391107               2215755 55 -   3101084 TT--TTCCAGCA-----------TTGGGAAG--------C-TGGG--GTAATTG-CAACAGA------------CTGC-----------TGGAAG--TTCTTCC----------T
i falPer1.KB391107             I 79 C 0
s ficAlb2.chr1A                 24321040 63 +  74947036 AT--TCCCAGTA-----------TTAGGAAG--------A-TGGG--GAAATTG-CAACAAAGTGAAA-TGTAAATGA-----------TGgaag--tttt-------------t
i ficAlb2.chr1A                I 75 C 0
s zonAlb1.KB913045              12581742 64 +  16390125 AT--TCCCTGTA-----------TTGGGAAG--------A-TGGA--GGAATTG-CTGCAAAGTGAAACTGTAAATGC-----------TGgaag--tttt-------------t
i zonAlb1.KB913045             I 51 C 0
s geoFor1.JH739914               5157466 64 -   7168866 AT--TCCCAGTA-----------CCGGGAAG--------A-GGGA--GGAATTG-CTACAAAGTGAAACTGTAAATGC-----------TCaaag--tttt-------------t
i geoFor1.JH739914             I 112 C 0
s taeGut2.chr1A                 23692402 55 +  73657157 AA--AGGGAAGA-----------TGGAGGAA--------T-TGCA--G----------CAAAGTGAAACTGTAAAGGC-----------TGGAAG--TTTG-------------T
i taeGut2.chr1A                I 52 C 0
s pseHum1.KB221193               9789122 63 +  32995986 AT--TCCCAGTA-----------TTGGGAAG--------A-TAGA--GGAATTG-CAACAAAGTGAAA-TGTAAATGC-----------TGgaag--tttt-------------t
i pseHum1.KB221193             I 93 C 0
s melUnd1.JH556589               7679784 71 -   7952740 TG--TTCCACTC-----------TAGGGAAA--------GCTGTG--GGAATTG-TAACAAAGTGGAA-TGTAAATGT-----------TGGaaa--tttttcc--c--tt--ct
i melUnd1.JH556589             I 52 C 0
s amaVit1.KB277496                  7216 70 -     10329 CT--TTCCAGTG-----------TTGGGAAG--------G-TGCC--AGAGTTC-TGACAGAGAAAAA-CGTCTCTGT-----------TGGTAG--TCATTCC--T--CC--TT
i amaVit1.KB277496             I 52 C 0
s galGal4.chr1                  24067367 72 + 195276750 TA--TTCCAGGA-----------GTGGGAAG--------T-TGTA--GTACTTG-TGACACAATGAAA-TATGACTGC-----------TGGAAG--TTTtacc--ttttt--tg
i galGal4.chr1                 I 91 C 0
s melGal1.chr1                  24929084 72 + 204065131 TA--TTCCAGGA-----------GTGGGAAG--------T-TGTA--GTAGTTG-TGACACAATGAAA-TATGACTGC-----------TGGAAA--TTTTACT--TTTTT--TG
i melGal1.chr1                 I 91 C 0
s allMis1.JH737798                 79614 50 +    106177 GTAATTCTATTT-----------AAGGTAAA--------A-----------------------------TTTAACTTC-----------TAGAAT--TTATTAC--CTCTT--TT
i allMis1.JH737798             I 67 C 0
s cheMyd1.KB478633               2433417 51 +   6037886 ----TGGCAATT-----------CTAATAAG--------A-TGGA--A---------------------TTTAACTTT-----------CAGAat--ttattct--ctctt--tt
i cheMyd1.KB478633             I 10 C 0
s chrPic2.chr2                  18523346 51 -  68452538 ----TGGCAATT-----------CTAATAAG--------A-TGGA--G---------------------TTTAACTTA-----------CGGAAT--TTATTCT--CTCTT--TT
i chrPic2.chr2                 I 10 C 0
s apaSpi1.KB929668               5961255 53 -  12308914 ----TGGCCAGT-----------TTAATAAG--------A-TGGA--A---------------------TTTAGTTTG-----------TCAGAT--TTATTCTCACTCTT--TT
i apaSpi1.KB929668             I 10 C 0
s anoCar2.chrUn_GL344195           44011 55 +     59083 TG--TGGCAGCA-----------TGAATTAT--------T-TGGA--CGA-------------------ATTGACATG-----------TGGGGC--TAACTTC--CTCTT--CT
i anoCar2.chrUn_GL344195       I 23 C 0
s xenTro7.KB021649             165250110 75 + 215906545 CT--TTAAAGTTAC---------TAAAAAAA--------A-TGTA--AACACTA-AAAAAATACAATA-GGAATGTTT-----------TGCAAT--TAACATGCATTTTT--T-
i xenTro7.KB021649             I 15 N 0
s danRer10.chr6                  4023785 65 -  60272633 AA--TTAAAACA------------AATTAAA--------T-TATATTAAAATTT-TATTAAATGGGCA-TTTCTTTT------------TTGAGG--ACTTCAT-----------
i danRer10.chr6                C 0 C 0
s astMex1.KB882082               3904593 88 -   8876373 ta--ttgagatGTTT--------TAATTAAGGACATTACT-TGTGGCAACATGT-TTAATAGTGTGTG-TGCCTCTTG-ATCATGTTTGTTGTGT--TATCTCT-----------
i astMex1.KB882082             C 0 C 0
s lepOcu1.chrLG8                10772907 96 +  50348508 ga--ttgaTATGTTGCTCGGATATATTTGAACATATTGTT-TATG--AAGATTTCTACCTTGCATGTG-TTGACCTTGTGTATTGTTTcgtctgt--ttctgtt-----------
i lepOcu1.chrLG8               C 0 C 0
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e anaPla1.KB742960                141378  0 +    531124 I
e pelSin1.JH211373               2650239  0 -   4257854 I

a score=2839943.000000
s hg38.chr8_KI270814v1_alt         78768 192 +    141812 GGTCTAATACTGAC-AGGCTATACAATGCCAAGAAGATGTTT-------ATGCAACTATTCTG------CTGGACTTTGGTGCCTATCCAGAT---ATTACAGATATCA---ACAGAAAAACTGCTCTCCACTGTGCTGTCTATAGTGAGAATAT-------GTCAGTGGTGGCAA-AACTGCTTTCACACAACACAAACATCTAAGTGAAAAATGGAGT
s panTro4.chr8                  55025320 187 + 143986469 GTTCTAATACTGAC-AGGCTATAACATGCCAAGAAGATG-----------TGAAACTATTCTG------CTAGACCTTGGTGCTGATCCAAAT---ATTACCGATGTCT---ATGGCAACACTGCTCTCCA-TATGCTCTCTATAATGAGAATAT-------GTCAATGGTAGCAA-AACTGTTTTCACACAAGACAAACATCAAAGTGAAAAACAATGT
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59048338 192 + 153482349 GGTCTAATACTGAC-AGGCTATACAATGCCAAGAAGACGTTT-------ATGCAACTATTCTG------CTGGACTTTGGTGCCTATCCAGAT---ATTACAGATATCA---ACAGAAAAACTGCTCTCCACTGTGCTGTCTATAGTGAGAATAT-------GTCAATGGTGGCAA-AGCTGCTTTCACACAACACAAACATCTAAGTGAAAAATGGAGT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48121945 192 + 100215132 GGTCTAATACTGAC-AGGCTATACAATGCCAAGAAGATGTTT-------ATGCAACTATGCTG------CTGGACTTTCGTGCCTATCCAGAT---ATTACAGATATCA---ACAGAAAAACTGCTCTCCAATGTGCTGTCTATAGTGAGAATAT-------GTCAATGGTGGCAA-AACTGCTTTCACACAACACAAACATCTAAGTGAAAAATGGAGT
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                  61692863 188 + 150158102 GTTCTAATACTGAT-AGGTTCTAACATGCCAAGAAGATG-----------TGAAACTATTCTG------CTAGACTTTGGTGTTGATCCAAAT---ATTGCAGATGTCT---ATGGCATCACTGCTCTCCA-CCTGCTGTCTGTAATGAGAGTAT-------GTCAAAGGTAACAACAACTGTTTTCATACAAGACAAACATCGAAGTGAAAAACGATGT
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366697 188 + 146850525 GTTCTAATACTGAT-AGGTTGTAACATGCCAAGAAGATG-----------TGAAACTATTCTG------CTAGACTTTGATGTTGATCCAAAT---ATTGCAGATGTCT---ATGGCATCACTGCTCTCCA-CCTGCTGTCTGTAATGAGAGTAT-------GTCAAAGGTAACAACAACTGTTTTCATACAAGACAAACATCGAAGTGAAAAACGATGT
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287234 187 + 139301422 GTTCTAATACTGAT-AGGCTCTAACATGCCAAGAAGATG-----------TGAAACTATTCTG------CTAGACTTTGGTGCTGATCCAAAT---ATTGCAGATGTCT---ATGGCAACACTGCTCTCCA-TATGCTGTCTGTAATGAGAATAT-------GTCAATGGTAGCAA-AACTGTTTTCACACAAGACAAACATCAAAGTGAAAAACGATGT
i chlSab2.chr8                 C 0 C 0
s monDom5.chr8                 174685067 192 + 312544902 TATGTTGTATTGAC-AGGCAGTACAATCCCAACATGAAGAAT-------GTGCAACTATTCTT------CTAGAAAATAAAGCAGAACCCAAT---CTTGTGGATATCA---ACAAAAATACTGCACTTCACTATGCTGTTTGTGGGCATAATGT-------ATCATTAGTGATTA-AATTGCTTGAACATAAAGCCAACACTGAAGCACAAAATAAGGT
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861934_random     57225 192 -    124633 TATGTTGTATTAAC-AGGCAGTACAATGTCAGCAGATAGAAT-------GTGCAACTATTCTT------CTAGAAAATAAAGCAGAACCCAAC---CTTGGGGATATCC---ATAAAAATACTGCCCTTCACTATGCTGCTTGTGGACATAACAT-------ATCACTTGTGAACA-AACTGATTGAACATAAAGCCAACATTGAAGCACAAAATAAGGT
i sarHar1.chr5_GL861934_random C 0 C 0
s macEug2.GL059506                  6141 192 +     21939 TGTATTATACTGGC-AGGCTGTACAGTGTCAGCAGAAAGAGT-------GTGCAACTATCCTG------CTTGAACATGGTGCAGACCCTAAC---CTTGTGGACACCG---ACAACAACACTGCACTTCACTATGCTGCCTTTGTACAGAACAC-------AGCCATAGCAGCAG-AGCTGCTTAGACATAAAACGGATATTGAAGCAAAAAACAAGGT
i macEug2.GL059506             C 0 C 0
s ornAna1.Ultra479               3871619 190 -   6008416 GGTTTGAT--TCGT-AGGCAATAGAATGCCAGAAGGAACAGT-------GTGCAATTATCCTG------CTGGATCACGATGCAGACCCCAAC---CTTGTGGATGCCA---AGCACAATACTGCCCTTCATTACGCTGCCTTAATTCCGAATGT-------ATCTTTAGCAGGAC-ATCTGCTTGAACACCGAGCTCATATTGACGTGCAAAACCAGGT
i ornAna1.Ultra479             C 0 C 0
s colLiv1.KB375358               1019432 192 +   1462937 TGTGTGTTGTTCCC-AGGCAGTACAGtgccagcaagaaaaat-------gtgtggCTATTCTA------CTAGAACATGGTGCTGAACCAAAT---CTGGCAGATTCTG---ATGGCAACACTGCCCTGCATCTGTCTGTCATCTCTCCTAATAC-------AACTGTGGCAGAGC-TGCTACTTGATTATGATGCCAATATTGAGGCCCAGAATAAGgt
i colLiv1.KB375358             C 0 C 0
s falChe1.KB398074               4263193 192 -   7151304 TTTGTGCTCTTCCC-AGGCAGTACAGTGCCATCAAGAAGAAT-------GTGTAGCTATTCTG------CTAGAGCACGGTGCCAACCCACAT---CTGGCAGATGCTG---ACGGCAACACTGCCCTTCACCTTGCTGTCCGGTGTCCGAACAC-------AACTGTAGCGGGGC-TCTTACTTGAGTATAATGCCAATATTGATGCTCAGAATAAGgt
i falChe1.KB398074             C 0 C 0
s falPer1.KB391107               2215810 192 -   3101084 TTTGTGCTCTTCCC-AGGCAGTACAGTGCCATCAAGAAGAAT-------GTGTAGCTATTCTG------CTAGAGCACGGTGCCAACCCACAT---CTGGCAGATGCTG---ACGGCAACACTGCCCTTCACCTTGCTGTCCGGTGTCCGAACAC-------AACTGTAGCGGGGC-TCTTACTTGAGTATAATGCCAATATTGATGCTCAGAATAAGgt
i falPer1.KB391107             C 0 C 0
s ficAlb2.chr1A                 24321103 192 +  74947036 tgtcttttgtttcc-aGGCAGTACAGTGCCAGCAAGAAAAAT-------GTGTGGCTATTCTG------CTAGAACATGGTGCTGACCCAAAT---CTGGCAGATGCTG---ATGGCAACACTGCCCTTCACCTGGCTGTCCTGTCTAGTAATAC-------TACTGTAGCAGGGT-TGTTACTTGAGCACAATGCCAATATTGATTCCCAAAATAAGgt
i ficAlb2.chr1A                C 0 C 0
s zonAlb1.KB913045              12581806 192 +  16390125 tgtgttttgtttcc-agGCAGTACAATGCCAGCAAGAAAAAT-------GTGTGGCTATTCTG------CTAGAACATGGTGCTGACCCCAAT---CTGGCAGATGCTG---ATGGCAACACTGCCCTTCACCTGGCTGTTCTGTCTGGCAATAC-------TGCTGTAGCAGGGC-TCTTACTTCAGCATGATGCCAATATTGATGCCCAAAATAAggt
i zonAlb1.KB913045             C 0 C 0
s geoFor1.JH739914               5157530 192 -   7168866 tgtgttttgtttcc-agGCAGTACAGTGCCAGCAAGAAAAAT-------GTGTGGCTATTCTG------CTAGAACATGGTGCTGACCCAGAT---CTGGCAGATGCTG---ATGGCAACACTGCCCTTCACCTGGCTGTCCTGTCTGGTAATAC-------TACTGTAGCAGGGC-TGTTACTTCAGCATAATGCCAATATTGATGCCCAAAATAAGgt
i geoFor1.JH739914             C 0 C 0
s taeGut2.chr1A                 23692457 192 +  73657157 TGTGTTTTGTTTCC-AGGCAGTACAGTGCCAGCAAGAAAAAT-------GTGTGGCTATTCTG------CTAGAACATGGTGCTGACCCAAAT---CTGGTAGATGCTG---ATGGCAACACTGCCCTTCATCTGGCTGTCCTGTCTGGTAATAC-------TACTGTAGCAGGGC-TGTTACTTCAGCATGATGCCAATATTGATGCCCAAAATAAGGT
i taeGut2.chr1A                C 0 C 0
s pseHum1.KB221193               9789185 192 +  32995986 tgtgttttgtttcc-agGCAGTACAGTGCCAGCAAGAAAAAT-------GTGTGGCTATTCTG------CTAGAACGTGGTGCTGACCCAAAT---CTGGCAGATGCTG---ATGGCAACACTGCCCTTCACCTGGCTGTCCTGCCTGGTAATAC-------TACTGTAGCAGGGC-TGTTACTTGAGCATAATGCCAATATTGATGCCCAAAATAAggt
i pseHum1.KB221193             C 0 C 0
s melUnd1.JH556589               7679855 192 -   7952740 tgtgtGTTGTTCCC-AGGCGGTACAGTGCCAGCAAGAAAAGT-------GTGTGGCTATTCTG------CTAGAGCATGGTGCTGACCCAGAT---CTGGCAGATGCAG---ATGGGAATAGTGCCGTTCATCTTCCTGTTATATCTCCTAATAC-------ATCTGCAGCAGGGC-TATTACTTGAGCATAATACTGGTATCGATGCCCAGAATAAGGT
i melUnd1.JH556589             C 0 C 0
s amaVit1.KB277496                  7286 192 -     10329 TCTGTCTTGTTTCC-AGGCAGTAGAGTCCAGGCACGAAGACT-------GTGTAGCTACTCTG------CTGGAGCTCGGTGCCCAAACTGAC---CTCAGAGATTTTG---CTGGCAACACTGCCCTTCACCTGGCTACCTTAGCAAAGAGCAA-------ACGTCTAGTGGAGC-TGTTACTGGAGCACAATGCCCATATTGATGCTTCAAATAAGGT
i amaVit1.KB277496             C 0 C 0
s galGal4.chr1                  24067439 192 + 195276750 tgtgtgttgtttcC-AGGCAGTACAATGCCAGCAAGAAAAAT-------GTGTGGCAATCCTG------CTGGAGCACGGTGCTGATCCGAAC---TTGGCAGATGCTA---ACGGCAACACTGCCCTTCACCTGGCTGCTGTAGCTCCTAACAC-------ATTTCTAGCAGGGA-TGTTAATTGAGCACAATGCCCATATTGATGCTCAGAATAAGGT
i galGal4.chr1                 C 0 C 0
s melGal1.chr1                  24929156 192 + 204065131 TGTGCGTTGTTTTC-AGGCAGTACAATGCCAGCAAGAAAAAT-------GTGTGGTAATCCTG------CTAGAGCACGGTGCTGATCCGAAC---CTGGGAGATGCTA---GCGGCAACACTGCCCTTCACCTGGCTGCTGTAGCTCCTAACAC-------ATTTCTGGCGGGGA-TATTAATTGAGCACAATGCCCATATTGATGCTCAGAATAAGGT
i melGal1.chr1                 C 0 C 0
s allMis1.JH737798                 79664 192 +    106177 TGTGTTATACTTCC-AGGCAGTACAATGCCAACAAGAAAAAT-------GTGCAACTCTGCTG------CTAGAACGTGGCGCAGACCCTAAT---CTTGTTGATGCTA---ACTGCAACACGGCCCTTCACTTTGCTGCCTGTATTCCTAATAT-------ATCTCTAGCAATAG-AGTTACTTGAGCATGATGCTGATATTGATGCACAAAATAAGGT
i allMis1.JH737798             C 0 C 0
s cheMyd1.KB478633               2433468 192 +   6037886 tctgttaTATTCAC-AGGCAGTACAATGCCAGCAGGAAAAAT-------GTGCAACTATGCTG------CTAGAACATGGTGCAGACCCTAAT---CTTGTGGATGTTA---ACAGCAGCACTGCCCTTCATCTGGCTGCCCAGACTGCTAATAT-------ATCTCTAGCAGTAC-TATTGCTTGAGTACAATGCCCATATTGAAGCACAGAATAAGGT
i cheMyd1.KB478633             C 0 C 0
s chrPic2.chr2                  18523397 192 -  68452538 TCTGTTATATTCAC-AGGCAGTACAATGCCAGCAGGAAAAAT-------GTGCAACTATGCTG------CTAGAACATGGTGCAGAACCTAAT---CTTGTGGATGTTA---ACAGCAACACTGCCCTTCACCTGGCTGCCCAGACTGCTAATAT-------ATCTCTAGTAGTAC-AATTGCTTGAGTACAATGCCCATATTGATTCGCAGAATAAGGT
i chrPic2.chr2                 C 0 C 0
s apaSpi1.KB929668               5961308 192 -  12308914 TCTATTACATTTAC-AGGCAGTACAGTGCCAGCAGGAAAAAT-------GTGTAACTTTGCTG------CTAGAACATGGCGCAGACCCTAAT---CTTGTGGATGTTA---ACAGCAACACTGCCCTTCACCTGGCTGCTCATACTGCTAATAT-------ATCTCTAGCAGTAC-AATTGCTTGAGTACAATGCCCAAATCGATGCACAGAATAAGGT
i apaSpi1.KB929668             C 0 C 0
s anoCar2.chrUn_GL344195           44066 188 +     59083 TAAATGTTAT-----AGGCTGTGCAGTGCCAGCAAGATTTAT-------GTGCAATTTACCTG------CTTGAGCAAGGAGCAGACCCTGAT---CTTGTGGATGCAT---ACAGTAACACTGCCCTCCACTTTGCTGCCTTTAATTCTAGCAT-------ATCAATAGCAAAGC-ATCTCCTTGAATATAATGCCAATGTTGAAGCACAGAATAAGGT
i anoCar2.chrUn_GL344195       C 0 C 0
s xenTro7.KB021657              78011888 197 - 124127367 AATTTGACTTTCTA-AGGCACACAAATG--GGGGAAAAGTATGCA----GTACAATTACTCTGAACTTTATGGATTTTGTTGTTTGTTTCAAA---CT---AAACATTT---TGGCTTGGACCTCTTTCCA--TGTTTGATCAGAATCACAAGATTTTAGAGATCATCGCTGTTAA-ATGTGTTTTCCTATTTGAATAAATTGTATATGCCAAATG----
i xenTro7.KB021657             N 0 C 0
s danRer10.chr6                  4023850 186 -  60272633 ----AGGACTTGATAAAGTAGTGAAATTATAAAATTAAAATTAAATTAAATGTGCATTTCTTT------CTTGAGAACTTCACAGGACTTGATTTACTATTGAAAATAATTTAAAAAAAAATAAAAATATAGTTAattattagagttctatttat-------atttaatattttat-atattgtatgttatgttattaatg----------------ggt
i danRer10.chr6                C 0 C 0
s astMex1.KB882082               3904681 188 -   8876373 ----GGATCTTGGC-AGGCGGTGCAATGCCAGCAGGATCGCT-------GTGTGTCCATCCTT------CTGGAACATGAGGCCGATCCCAAC---CTGGTGGACATCA---ATGGCAACACAGCACTGCATTTGGCTGCCCGTATCCCCTCCCT-------GTCTGTGGCCTTGC-AGCTCCTGGAACATGAGGCTAACATCAACGCCCAGAACAAGGT
i astMex1.KB882082             C 0 C 0
s lepOcu1.chrLG8                10773003 187 +  50348508 ----tgattttgc--aGGCTGTGCAATGCCAACAGGAGCAGT-------GTGCAGTTACCCTG------TTGGAAAACGATGCGGACCCAAAC---CTTGTGGATATCA---ATGGAAACACTGCATTGCACCTTTCTGCCCTCATCCCTTCCAT-------TTCCATGGCTGCCC-AGTTACTGGAGCATAAAGCAAACATAAATGCTGAAAACAAGGT
i lepOcu1.chrLG8               C 0 N 0
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637   0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e anaPla1.KB742960                141378   0 +    531124 I
e pelSin1.JH211373               2650239   0 -   4257854 I

a score=1258.000000
s hg38.chr8_KI270814v1_alt         78960 1 +    141812 -A
s panTro4.chr8                  55025507 1 + 143986469 -A
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59048530 1 + 153482349 -A
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48122137 1 + 100215132 -A
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                  61693051 1 + 150158102 -A
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366885 1 + 146850525 -A
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287421 1 + 139301422 -A
i chlSab2.chr8                 C 0 C 0
s macEug2.GL059506                  6333 1 +     21939 -A
i macEug2.GL059506             C 0 C 0
s ornAna1.Ultra479               3871809 1 -   6008416 -A
i ornAna1.Ultra479             C 0 C 0
s colLiv1.KB375358               1019624 1 +   1462937 -a
i colLiv1.KB375358             C 0 C 0
s falChe1.KB398074               4263385 1 -   7151304 -a
i falChe1.KB398074             C 0 C 0
s falPer1.KB391107               2216002 1 -   3101084 -a
i falPer1.KB391107             C 0 C 0
s ficAlb2.chr1A                 24321295 1 +  74947036 -g
i ficAlb2.chr1A                C 0 C 0
s zonAlb1.KB913045              12581998 1 +  16390125 -a
i zonAlb1.KB913045             C 0 C 0
s geoFor1.JH739914               5157722 1 -   7168866 -a
i geoFor1.JH739914             C 0 C 0
s taeGut2.chr1A                 23692649 1 +  73657157 -A
i taeGut2.chr1A                C 0 C 0
s pseHum1.KB221193               9789377 1 +  32995986 -a
i pseHum1.KB221193             C 0 C 0
s melUnd1.JH556589               7680047 1 -   7952740 -A
i melUnd1.JH556589             C 0 C 0
s amaVit1.KB277496                  7478 1 -     10329 -A
i amaVit1.KB277496             C 0 C 0
s galGal4.chr1                  24067631 1 + 195276750 -A
i galGal4.chr1                 C 0 T 542
s melGal1.chr1                  24929348 1 + 204065131 -A
i melGal1.chr1                 C 0 T 4997
s cheMyd1.KB478633               2433660 1 +   6037886 -A
i cheMyd1.KB478633             C 0 I 20
s chrPic2.chr2                  18523589 1 -  68452538 -A
i chrPic2.chr2                 C 0 T 544
s apaSpi1.KB929668               5961500 1 -  12308914 -A
i apaSpi1.KB929668             C 0 T 297
s anoCar2.chrUn_GL344195           44254 1 +     59083 -A
i anoCar2.chrUn_GL344195       C 0 C 0
s danRer10.chr6                  4024036 1 -  60272633 t-
i danRer10.chr6                C 0 C 0
s astMex1.KB882082               3904869 1 -   8876373 G-
i astMex1.KB882082             C 0 C 0
e xenTro7.KB021657              78012085 0 - 124127367 C
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e allMis1.JH737798                 79856 0 +    106177 C
e sarHar1.chr5_GL861934_random     57417 0 -    124633 C
e anaPla1.KB742960                141378 0 +    531124 I
e pelSin1.JH211373               2650239 0 -   4257854 I
e monDom5.chr8                 174685259 0 + 312544902 C

a score=-4823.000000
s hg38.chr8_KI270814v1_alt         78961 1 +    141812 -G
s panTro4.chr8                  55025508 1 + 143986469 -G
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59048531 1 + 153482349 -G
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48122138 1 + 100215132 -G
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                  61693052 1 + 150158102 -G
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366886 1 + 146850525 -G
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287422 1 + 139301422 -G
i chlSab2.chr8                 C 0 C 0
s macEug2.GL059506                  6334 1 +     21939 -G
i macEug2.GL059506             C 0 C 0
s ornAna1.Ultra479               3871810 1 -   6008416 -G
i ornAna1.Ultra479             C 0 T 7152
s cheMyd1.KB478633               2433681 1 +   6037886 -g
i cheMyd1.KB478633             I 20 C 0
s danRer10.chr6                  4024037 1 -  60272633 t-
i danRer10.chr6                C 0 C 0
s astMex1.KB882082               3904870 1 -   8876373 A-
i astMex1.KB882082             C 0 C 0
e xenTro7.KB021657              78012085 0 - 124127367 C
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chr1A                 24321296 0 +  74947036 C
e anoCar2.chrUn_GL344195           44255 0 +     59083 C
e pseHum1.KB221193               9789378 0 +  32995986 C
e zonAlb1.KB913045              12581999 0 +  16390125 C
e colLiv1.KB375358               1019625 0 +   1462937 C
e allMis1.JH737798                 79856 0 +    106177 C
e falPer1.KB391107               2216003 0 -   3101084 C
e falChe1.KB398074               4263386 0 -   7151304 C
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157723 0 -   7168866 C
e sarHar1.chr5_GL861934_random     57417 0 -    124633 C
e melGal1.chr1                  24929349 4997 + 204065131 T
e anaPla1.KB742960                141378 0 +    531124 I
e amaVit1.KB277496                  7479 0 -     10329 C
e apaSpi1.KB929668               5961501 297 -  12308914 T
e chrPic2.chr2                  18523590 544 -  68452538 T
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680048 0 -   7952740 C
e monDom5.chr8                 174685259 0 + 312544902 C
e taeGut2.chr1A                 23692650 0 +  73657157 C

a score=14830.000000
s hg38.chr8_KI270814v1_alt         78962 1 +    141812 A
s panTro4.chr8                  55025509 1 + 143986469 A
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59048532 1 + 153482349 A
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48122139 1 + 100215132 A
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                  61693053 1 + 150158102 A
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366887 1 + 146850525 A
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287423 1 + 139301422 A
i chlSab2.chr8                 C 0 C 0
s macEug2.GL059506                  6335 1 +     21939 A
i macEug2.GL059506             C 0 C 0
s colLiv1.KB375358               1019625 1 +   1462937 a
i colLiv1.KB375358             C 0 I 10
s falChe1.KB398074               4263386 1 -   7151304 a
i falChe1.KB398074             C 0 T 600
s falPer1.KB391107               2216003 1 -   3101084 a
i falPer1.KB391107             C 0 T 600
s zonAlb1.KB913045              12581999 1 +  16390125 a
i zonAlb1.KB913045             C 0 T 6532
s geoFor1.JH739914               5157723 1 -   7168866 a
i geoFor1.JH739914             C 0 T 543
s taeGut2.chr1A                 23692650 1 +  73657157 A
i taeGut2.chr1A                C 0 T 537
s pseHum1.KB221193               9789378 1 +  32995986 a
i pseHum1.KB221193             C 0 C 0
s melUnd1.JH556589               7680048 1 -   7952740 A
i melUnd1.JH556589             C 0 T 6397
s amaVit1.KB277496                  7479 1 -     10329 A
i amaVit1.KB277496             C 0 I 27
s cheMyd1.KB478633               2433682 1 +   6037886 a
i cheMyd1.KB478633             C 0 C 0
s anoCar2.chrUn_GL344195           44255 1 +     59083 A
i anoCar2.chrUn_GL344195       C 0 I 1
s danRer10.chr6                  4024038 1 -  60272633 t
i danRer10.chr6                C 0 C 0
s astMex1.KB882082               3904871 1 -   8876373 A
i astMex1.KB882082             C 0 C 0
e xenTro7.KB021657              78012085 0 - 124127367 C
e ornAna1.Ultra479               3871811 7152 -   6008416 T
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chr1A                 24321296 0 +  74947036 C
e allMis1.JH737798                 79856 0 +    106177 C
e galGal4.chr1                  24067632 542 + 195276750 T
e sarHar1.chr5_GL861934_random     57417 0 -    124633 C
e melGal1.chr1                  24929349 4997 + 204065131 T
e anaPla1.KB742960                141378 0 +    531124 I
e apaSpi1.KB929668               5961501 297 -  12308914 T
e chrPic2.chr2                  18523590 544 -  68452538 T
e pelSin1.JH211373               2650239 0 -   4257854 I
e monDom5.chr8                 174685259 0 + 312544902 C

a score=5500.000000
s hg38.chr8_KI270814v1_alt         78963 1 +    141812 G
s panTro4.chr8                  55025510 1 + 143986469 G
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59048533 1 + 153482349 G
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48122140 1 + 100215132 G
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                  61693054 1 + 150158102 G
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366888 1 + 146850525 G
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287424 1 + 139301422 G
i chlSab2.chr8                 C 0 C 0
s cheMyd1.KB478633               2433683 1 +   6037886 g
i cheMyd1.KB478633             C 0 I 15
s anoCar2.chrUn_GL344195           44257 1 +     59083 G
i anoCar2.chrUn_GL344195       I 1 T 5209
s danRer10.chr6                  4024039 1 -  60272633 g
i danRer10.chr6                C 0 C 0
s astMex1.KB882082               3904872 1 -   8876373 G
i astMex1.KB882082             C 0 C 0
e xenTro7.KB021657              78012085 0 - 124127367 C
e ornAna1.Ultra479               3871811 7152 -   6008416 T
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chr1A                 24321296 0 +  74947036 C
e pseHum1.KB221193               9789379 0 +  32995986 C
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375358               1019626 10 +   1462937 I
e allMis1.JH737798                 79856 0 +    106177 C
e falPer1.KB391107               2216004 600 -   3101084 T
e falChe1.KB398074               4263387 600 -   7151304 T
e macEug2.GL059506                  6336 0 +     21939 C
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e sarHar1.chr5_GL861934_random     57417 0 -    124633 C
e melGal1.chr1                  24929349 4997 + 204065131 T
e anaPla1.KB742960                141378 0 +    531124 I
e amaVit1.KB277496                  7480 27 -     10329 I
e apaSpi1.KB929668               5961501 297 -  12308914 T
e chrPic2.chr2                  18523590 544 -  68452538 T
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr8                 174685259 0 + 312544902 C
e taeGut2.chr1A                 23692651 537 +  73657157 T

a score=-142006.000000
s hg38.chr8_KI270814v1_alt         78964 39 +    141812 AATAACCAACATTATTTTCAAAATATTTGAAATCCA-TTT--
s panTro4.chr8                  55025511 37 + 143986469 --CAACCAACGTTATTTTCAAAATATTTGAAATCCA-CTT--
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59048534 40 + 153482349 AGCAACCAACATTATTTTCAAAATATTTGAAATCCATTTT--
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48122141 39 + 100215132 AGCAACCAACATTATTTTCAAAACATTTGAAATCCA-TTT--
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                  61693055 39 + 150158102 ATCAACCATTGTTATTTTCAAAATATTTGAAATCCA-CTT--
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366889 39 + 146850525 ATCAACCATTGTTATTTTCAAAATATTTGAAATCCA-CTT--
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287425 39 + 139301422 ATCAACCATTGTTATTTTCAAAATATTTGAAATCCA-CTT--
i chlSab2.chr8                 C 0 C 0
s monDom5.chr8                 174685259 36 + 312544902 ---ACCTTTCATTAGGGAAAAAAGATTGTGAATCCT-TTT--
i monDom5.chr8                 C 0 N 0
s sarHar1.chr5_GL861934_random     57417 30 -    124633 ---acctttccatttaaaaaaaaatt------ctct-ttt--
i sarHar1.chr5_GL861934_random C 0 I 35
s macEug2.GL059506                  6336 27 +     21939 ---AGCCAACCTCttataataaa---------ttat-ttt--
i macEug2.GL059506             C 0 I 36
s colLiv1.KB375358               1019636 13 +   1462937 -----------ttgtt---------aagGAAAT---------
i colLiv1.KB375358             I 10 C 0
s ficAlb2.chr1A                 24321296 24 +  74947036 attttttatatttgtt---------aatGAATT---------
i ficAlb2.chr1A                C 0 C 0
s pseHum1.KB221193               9789379 23 +  32995986 -atttttatatttgtt---------attGACGT---------
i pseHum1.KB221193             C 0 C 0
s amaVit1.KB277496                  7507 22 -     10329 GTTCCCCAAATTTGTT-----------TGACTT---------
i amaVit1.KB277496             I 27 C 0
s allMis1.JH737798                 79856 26 +    106177 -------AACTTTACTTTCAGAAAAACAGAATT---------
i allMis1.JH737798             C 0 C 0
s cheMyd1.KB478633               2433699 13 +   6037886 AGATTTCAACTTC-----------------------------
i cheMyd1.KB478633             I 15 C 0
s xenTro7.KB021657              78012085 20 - 124127367 -------------------AAAATATGTCCATTCTA-TTT--
i xenTro7.KB021657             C 0 C 0
s danRer10.chr6                  4024040 37 -  60272633 --caattgta-atattttagttatattgttaatta--cttaa
i danRer10.chr6                C 0 C 0
s astMex1.KB882082               3904873 39 -   8876373 --CCTCAGCAGGGATCTCATCAGGACTCCAGATTAC-CTTTA
i astMex1.KB882082             C 0 C 0
e ornAna1.Ultra479               3871811 7152 -   6008416 T
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e anoCar2.chrUn_GL344195           44258 5209 +     59083 T
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e falPer1.KB391107               2216004 600 -   3101084 T
e falChe1.KB398074               4263387 600 -   7151304 T
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr1                  24929349 4997 + 204065131 T
e anaPla1.KB742960                141378  0 +    531124 I
e apaSpi1.KB929668               5961501 297 -  12308914 T
e chrPic2.chr2                  18523590 544 -  68452538 T
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr1A                 23692651 537 +  73657157 T

a score=10021.000000
s hg38.chr8_KI270814v1_alt        79003 5 +    141812 GCTTT
s panTro4.chr8                 55025548 5 + 143986469 GTTTT
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59048574 5 + 153482349 ATTTT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                48122180 5 + 100215132 GCTTT
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                 61693094 5 + 150158102 GTTTT
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                 58366928 5 + 146850525 GTTTT
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                 53287464 5 + 139301422 GTTTT
i chlSab2.chr8                 C 0 C 0
s colLiv1.KB375358              1019649 5 +   1462937 TCTTT
i colLiv1.KB375358             C 0 I 27
s ficAlb2.chr1A                24321320 5 +  74947036 GCTTT
i ficAlb2.chr1A                C 0 T 738
s pseHum1.KB221193              9789402 5 +  32995986 GCTTT
i pseHum1.KB221193             C 0 T 578
s amaVit1.KB277496                 7529 5 -     10329 TTCTG
i amaVit1.KB277496             C 0 I 12
s allMis1.JH737798                79882 3 +    106177 TCA--
i allMis1.JH737798             C 0 C 0
s xenTro7.KB021657             78012105 5 - 124127367 GCATC
i xenTro7.KB021657             C 0 C 0
s danRer10.chr6                 4024077 5 -  60272633 gttat
i danRer10.chr6                C 0 C 0
s astMex1.KB882082              3904912 5 -   8876373 GCTTT
i astMex1.KB882082             C 0 C 0
e ornAna1.Ultra479              3871811 7152 -   6008416 T
e tetNig2.chr13                 4300044 851 -  13302670 T
e punNye1.JH419232              4767720 338 +   5065651 T
e mayZeb1.JH720588              2493684 338 +   2778784 T
e hapBur1.JH425411              1657068 338 +   1983257 T
e neoBri1.JH422276              4185134 338 -  16571924 T
e araMac1.AOUJ01470298              637 0 -       895 I
e takFla1.KE120500               511214 428 +    663757 T
e fr3.chr9                      3741472 428 -  13922460 T
e anoCar2.chrUn_GL344195          44258 5209 +     59083 T
e zonAlb1.KB913045             12582000 6532 +  16390125 T
e falPer1.KB391107              2216004 600 -   3101084 T
e falChe1.KB398074              4263387 600 -   7151304 T
e macEug2.GL059506                 6363 36 +     21939 I
e galGal4.chr1                 24067632 542 + 195276750 T
e geoFor1.JH739914              5157724 543 -   7168866 T
e sarHar1.chr5_GL861934_random    57447 35 -    124633 I
e melGal1.chr1                 24929349 4997 + 204065131 T
e anaPla1.KB742960               141378 0 +    531124 I
e apaSpi1.KB929668              5961501 297 -  12308914 T
e cheMyd1.KB478633              2433712 0 +   6037886 C
e chrPic2.chr2                 18523590 544 -  68452538 T
e pelSin1.JH211373              2650239 0 -   4257854 I
e melUnd1.JH556589              7680049 6397 -   7952740 T
e taeGut2.chr1A                23692651 537 +  73657157 T

a score=-105813.000000
s hg38.chr8_KI270814v1_alt         79008 45 +    141812 -----AAC----------ACTGACATGCGTTAGGGTCAGTTTTTCATATTT----GGAAGCTCA
s panTro4.chr8                  55025553 45 + 143986469 -----AAC----------ATTGACATATGTAAGGGTCAGTTTTTCCTATTT----GGAAGCTTA
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59048579 45 + 153482349 -----AAC----------ACTGACATATGTTAGGGTCAGTTTTTCATATTT----GGAAGCTCA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48122185 45 + 100215132 -----AAC----------ACTGACATACGTTAGGGTCAATTTTTCATATTT----GGAAGCTCA
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                  61693099 45 + 150158102 -----AAC----------ATTGACATATGTAAGGGTCAATTTTTCCTATTT----GGAAGCTTA
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366933 45 + 146850525 -----AAC----------ATTGACATATGTAAGGGTCAATTTTTCCTATTT----GGAAGCTTA
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287469 45 + 139301422 -----AAC----------ATTGACATATGTAAGGGTCAATTTTTCGTATTT----GGAAGCTTA
i chlSab2.chr8                 C 0 C 0
s monDom5.chr8                 174086288 28 + 312544902 ---------------------GATGTATAATCAAGTAGTGTTT---------------GGGTCA
i monDom5.chr8                 N 0 C 0
s sarHar1.chr5_GL861934_random     57482 30 -    124633 ------AT----------ATCGATTTAGAAGTAAATTGGTTCT------------------TCG
i sarHar1.chr5_GL861934_random I 35 C 0
s macEug2.GL059506                  6399 24 +     21939 ------AC----------ATTGATATGATAATATATTATC------------------------
i macEug2.GL059506             I 36 C 0
s colLiv1.KB375358               1019681 37 +   1462937 -----aag----------gttggtgtgttct---ttttttttt----attt----tgaacttt-
i colLiv1.KB375358             I 27 T 687
s amaVit1.KB277496                  7546 35 -     10329 -----AGA----------GGTGATGTCtact---ttcagctt------tca----gaaactcC-
i amaVit1.KB277496             I 12 C 0
s allMis1.JH737798                 79885 35 +    106177 ------AA----------CATTATATATTTTAAGTTCAGTTTT----GGAA----GGGG-----
i allMis1.JH737798             C 0 C 0
s cheMyd1.KB478633               2433712 28 +   6037886 -----TAG----------TTTAATGTGTGTT--------TTCT----AAAA----AAGA-----
i cheMyd1.KB478633             C 0 C 0
s xenTro7.KB021657              78012110 22 - 124127367 -----AAC----------GGTTACATGT------------------TATCT----GAAA-----
i xenTro7.KB021657             C 0 C 0
s danRer10.chr6                  4024082 47 -  60272633 agcttaat-----------------tattattattattattgttgttattattgtggttgttga
i danRer10.chr6                C 0 C 0
s astMex1.KB882082               3904917 62 -   8876373 ATCCCAACACAGCAGGTGTCTGATATATGGTGAGGGATAGGTTTCTTGTTA--GTGGATCCTGA
i astMex1.KB882082             C 0 C 0
e ornAna1.Ultra479               3871811 7152 -   6008416 T
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chr1A                 24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195           44258 5209 +     59083 T
e pseHum1.KB221193               9789407 578 +  32995986 T
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e falPer1.KB391107               2216004 600 -   3101084 T
e falChe1.KB398074               4263387 600 -   7151304 T
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr1                  24929349 4997 + 204065131 T
e anaPla1.KB742960                141378  0 +    531124 I
e apaSpi1.KB929668               5961501 297 -  12308914 T
e chrPic2.chr2                  18523590 544 -  68452538 T
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr1A                 23692651 537 +  73657157 T

a score=282.000000
s hg38.chr8_KI270814v1_alt         79053 4 +    141812 AGCA
s panTro4.chr8                  55025598 4 + 143986469 AGCA
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59048624 4 + 153482349 AGCA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48122230 4 + 100215132 AGCA
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                  61693144 4 + 150158102 AGCA
i rheMac3.chr8                 C 0 I 41
s macFas5.chr8                  58366978 4 + 146850525 AGCA
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287514 4 + 139301422 AGCA
i chlSab2.chr8                 C 0 I 41
s monDom5.chr8                 174086316 4 + 312544902 CATA
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861934_random     57512 4 -    124633 AATA
i sarHar1.chr5_GL861934_random C 0 I 10
s macEug2.GL059506                  6423 3 +     21939 -ATA
i macEug2.GL059506             C 0 I 6
s amaVit1.KB277496                  7581 3 -     10329 -ACT
i amaVit1.KB277496             C 0 C 0
s allMis1.JH737798                 79920 4 +    106177 TGCA
i allMis1.JH737798             C 0 C 0
s cheMyd1.KB478633               2433740 4 +   6037886 ACAA
i cheMyd1.KB478633             C 0 C 0
s danRer10.chr6                  4024129 1 -  60272633 --t-
i danRer10.chr6                C 0 C 0
e xenTro7.KB021657              78012132 0 - 124127367 C
e ornAna1.Ultra479               3871811 7152 -   6008416 T
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637 0 -       895 I
e astMex1.KB882082               3904979 0 -   8876373 C
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chr1A                 24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195           44258 5209 +     59083 T
e pseHum1.KB221193               9789407 578 +  32995986 T
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375358               1019718 687 +   1462937 T
e falPer1.KB391107               2216004 600 -   3101084 T
e falChe1.KB398074               4263387 600 -   7151304 T
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr1                  24929349 4997 + 204065131 T
e anaPla1.KB742960                141378 0 +    531124 I
e apaSpi1.KB929668               5961501 297 -  12308914 T
e chrPic2.chr2                  18523590 544 -  68452538 T
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr1A                 23692651 537 +  73657157 T

a score=-12682.000000
s hg38.chr8_KI270814v1_alt         79057 10 +    141812 TGCTCTTCTG
s panTro4.chr8                  55025602  5 + 143986469 -----ATCCC
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59048628 10 + 153482349 TGCTCTTCTG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48122234 10 + 100215132 TGCTGTTCTG
i nomLeu3.chr16                C 0 C 0
s macFas5.chr8                  58366982  5 + 146850525 -----ATCCC
i macFas5.chr8                 C 0 C 0
s monDom5.chr8                 174086320  5 + 312544902 -----CTTTA
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861934_random     57526 10 -    124633 ATCTCTTGTA
i sarHar1.chr5_GL861934_random I 10 C 0
s macEug2.GL059506                  6432  5 +     21939 -----TTATA
i macEug2.GL059506             I 6 C 0
s amaVit1.KB277496                  7584  7 -     10329 ---TGTTCAG
i amaVit1.KB277496             C 0 C 0
s allMis1.JH737798                 79924  7 +    106177 ---TCCTCAT
i allMis1.JH737798             C 0 C 0
s cheMyd1.KB478633               2433744  7 +   6037886 ---CGCTCAT
i cheMyd1.KB478633             C 0 I 3
s danRer10.chr6                  4024130 10 -  60272633 tattattatA
i danRer10.chr6                C 0 C 0
s astMex1.KB882082               3904979 10 -   8876373 GACCTTGATG
i astMex1.KB882082             C 0 C 0
e xenTro7.KB021657              78012132  0 - 124127367 C
e ornAna1.Ultra479               3871811 7152 -   6008416 T
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chr1A                 24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195           44258 5209 +     59083 T
e pseHum1.KB221193               9789407 578 +  32995986 T
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375358               1019718 687 +   1462937 T
e falPer1.KB391107               2216004 600 -   3101084 T
e falChe1.KB398074               4263387 600 -   7151304 T
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr1                  24929349 4997 + 204065131 T
e anaPla1.KB742960                141378  0 +    531124 I
e apaSpi1.KB929668               5961501 297 -  12308914 T
e chrPic2.chr2                  18523590 544 -  68452538 T
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr1A                 23692651 537 +  73657157 T
e rheMac3.chr8                  61693148 41 + 150158102 I
e chlSab2.chr8                  53287518 41 + 139301422 I

a score=-108064.000000
s hg38.chr8_KI270814v1_alt         79067 31 +    141812 TGA---ATGAAAA--------TATTCTGAAGTA-----ACTGTCTAA-------------------
s panTro4.chr8                  55025607 31 + 143986469 TGA---ATAAAAA--------TAATTTGAAATA-----ATGGTCTAA-------------------
i panTro4.chr8                 C 0 I 5
s ponAbe2.chr8                  59048638 31 + 153482349 TGA---ATGAAAA--------TATTCTGAAGTA-----ACTGTCtaa-------------------
i ponAbe2.chr8                 C 0 I 5
s nomLeu3.chr16                 48122244 27 + 100215132 TGA---GTGAAAA--------TATTCTGAAGTA-----A----CTAA-------------------
i nomLeu3.chr16                C 0 I 5
s macFas5.chr8                  58366987 31 + 146850525 TAA---ATAAAAA--------TAATTTGAAATA-----ATGGTCTAA-------------------
i macFas5.chr8                 C 0 I 5
s monDom5.chr8                 174086325 32 + 312544902 TAATTTGTATATA--------CTT--GGGAACA-----TTTATTTGA-------------------
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861934_random     57536 39 -    124633 TTATGTATGCAAA--------AATTGAGAATCAGTGACCTTTCCTAA-------------------
i sarHar1.chr5_GL861934_random C 0 C 0
s macEug2.GL059506                  6437 32 +     21939 TGATTCATATAAT--------CAT--GGAAGCA-----TTTCCCTAA-------------------
i macEug2.GL059506             C 0 C 0
s taeGut2.chr3                  13879468 31 - 112617285 -----------TAAAATAACTTACAGTGAAGAA-----ACAGTGTAA-------------------
i taeGut2.chr3                 n 537 C 0
s amaVit1.KB277496                  7591 33 -     10329 ------GCAATCAAGATA---CACTGTGAAGAG-----ATTGTCGAG-------------------
i amaVit1.KB277496             C 0 C 0
s allMis1.JH737798                 79931 17 +    106177 -------------------------ACAAAAAC-----ATTGTTCTC-------------------
i allMis1.JH737798             C 0 C 0
s cheMyd1.KB478633               2433754 21 +   6037886 ---------------------TGtcttaaaaca-----gtattttta-------------------
i cheMyd1.KB478633             I 3 C 0
s xenTro7.KB021657              78012132 22 - 124127367 TGA---ATAAGAA--------TA---GGAAATG-----TTA-------------------------
i xenTro7.KB021657             C 0 C 0
s danRer10.chr6                  4024140 38 -  60272633 --------------------ACAA-ATTAAGAA-----ATATCCCCTT--GGCAATTACAACTAAA
i danRer10.chr6                C 0 C 0
s astMex1.KB882082               3904989 38 -   8876373 --------------------GCAGCATGAAATT-----ATATCCTCACAAGGCA---ACAGCTGAA
i astMex1.KB882082             C 0 C 0
e ornAna1.Ultra479               3871811 7152 -   6008416 T
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chr1A                 24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195           44258 5209 +     59083 T
e pseHum1.KB221193               9789407 578 +  32995986 T
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375358               1019718 687 +   1462937 T
e falPer1.KB391107               2216004 600 -   3101084 T
e falChe1.KB398074               4263387 600 -   7151304 T
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr1                  24929349 4997 + 204065131 T
e anaPla1.KB742960                141378  0 +    531124 I
e apaSpi1.KB929668               5961501 297 -  12308914 T
e chrPic2.chr2                  18523590 544 -  68452538 T
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e rheMac3.chr8                  61693148 41 + 150158102 I
e chlSab2.chr8                  53287518 41 + 139301422 I

a score=-658.000000
s hg38.chr8_KI270814v1_alt         79098 1 +    141812 T
s panTro4.chr8                  55025643 1 + 143986469 T
i panTro4.chr8                 I 5 C 0
s ponAbe2.chr8                  59048674 1 + 153482349 t
i ponAbe2.chr8                 I 5 C 0
s nomLeu3.chr16                 48122276 1 + 100215132 T
i nomLeu3.chr16                I 5 C 0
s rheMac3.chr8                  61693189 1 + 150158102 T
i rheMac3.chr8                 I 41 C 0
s macFas5.chr8                  58367023 1 + 146850525 T
i macFas5.chr8                 I 5 C 0
s chlSab2.chr8                  53287559 1 + 139301422 T
i chlSab2.chr8                 I 41 C 0
s monDom5.chr8                 174086357 1 + 312544902 T
i monDom5.chr8                 C 0 I 4
s sarHar1.chr5_GL861934_random     57575 1 -    124633 A
i sarHar1.chr5_GL861934_random C 0 I 31
s macEug2.GL059506                  6469 1 +     21939 T
i macEug2.GL059506             C 0 n 0
s taeGut2.chr3                  13879499 1 - 112617285 A
i taeGut2.chr3                 C 0 I 14
s amaVit1.KB277496                  7624 1 -     10329 T
i amaVit1.KB277496             C 0 T 3737
s allMis1.JH737798                 79948 1 +    106177 A
i allMis1.JH737798             C 0 I 1
s cheMyd1.KB478633               2433775 1 +   6037886 a
i cheMyd1.KB478633             C 0 I 22
s danRer10.chr6                  4024178 1 -  60272633 C
i danRer10.chr6                C 0 C 0
s astMex1.KB882082               3905027 1 -   8876373 T
i astMex1.KB882082             C 0 C 0
e xenTro7.KB021657              78012154 0 - 124127367 C
e ornAna1.Ultra479               3871811 7152 -   6008416 T
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chr1A                 24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195           44258 5209 +     59083 T
e pseHum1.KB221193               9789407 578 +  32995986 T
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375358               1019718 687 +   1462937 T
e falPer1.KB391107               2216004 600 -   3101084 T
e falChe1.KB398074               4263387 600 -   7151304 T
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr1                  24929349 4997 + 204065131 T
e anaPla1.KB742960                141378 0 +    531124 I
e apaSpi1.KB929668               5961501 297 -  12308914 T
e chrPic2.chr2                  18523590 544 -  68452538 T
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T

a score=-17836.000000
s hg38.chr8_KI270814v1_alt         79099 31 +    141812 AATTTAAA------TATTAATGTTTTTAAAGAAGTAT
s panTro4.chr8                  55025644 31 + 143986469 ACCTTAAA------TACTAATATCTTTAAAAAAGTAT
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59048675 31 + 153482349 aatttaaa------tattaatgtttttaaaGAAGTAC
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48122277 31 + 100215132 AATTTAAA------TATTAATGTTTTTAAAGAAGTAT
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                  61693190 31 + 150158102 ACTTTAAA------TACTAATATCTTTCAAAAAGTAT
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58367024 31 + 146850525 ACTTTAAA------TACTAATATCTTTCAAAAAGTAT
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287560 31 + 139301422 ACTTTAAA------TACTAATATCTTTTAAAAAGTAT
i chlSab2.chr8                 C 0 C 0
s monDom5.chr8                 174086362 11 + 312544902 ACTTAAAA--------------------------TAA
i monDom5.chr8                 I 4 C 0
s sarHar1.chr5_GL861934_random     57607 24 -    124633 atttcaaa------tgcaGAGTTTTTC-------TAC
i sarHar1.chr5_GL861934_random I 31 C 0
s taeGut2.chr3                  13879514 18 - 112617285 AATC----------TCTTAGTGTT---------GTAT
i taeGut2.chr3                 I 14 C 0
s allMis1.JH737798                 79950 10 +    106177 --------------TTTTGGGTTT-------------
i allMis1.JH737798             I 1 C 0
s cheMyd1.KB478633               2433798 29 +   6037886 aatcaGAA------TCTTGGTATAT--AAATCATCAT
i cheMyd1.KB478633             I 22 C 0
s xenTro7.KB021657              78012154 28 - 124127367 ---TTATA------AATCAAAATGACAAATGAGGAAA
i xenTro7.KB021657             C 0 N 0
s danRer10.chr6                  4024179 25 -  60272633 -----AAG------AATTTTTTTTTTCTGTAAATAA-
i danRer10.chr6                C 0 C 0
s astMex1.KB882082               3905028 31 -   8876373 -----AAGCAGGAACACTTTActtttgtgcaaaaaa-
i astMex1.KB882082             C 0 C 0
e ornAna1.Ultra479               3871811 7152 -   6008416 T
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chr1A                 24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195           44258 5209 +     59083 T
e pseHum1.KB221193               9789407 578 +  32995986 T
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375358               1019718 687 +   1462937 T
e falPer1.KB391107               2216004 600 -   3101084 T
e falChe1.KB398074               4263387 600 -   7151304 T
e macEug2.GL059506                  6470  0 +     21939 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr1                  24929349 4997 + 204065131 T
e anaPla1.KB742960                141378  0 +    531124 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e chrPic2.chr2                  18523590 544 -  68452538 T
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T

a score=9343.000000
s hg38.chr8_KI270814v1_alt         79130 13 +    141812 TAGACGGTATAGC
s panTro4.chr8                  55025675 13 + 143986469 TAGAGAGTATGGC
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59048706 13 + 153482349 TAGAGGGTATAGC
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48122308 13 + 100215132 TAGAGAGTGTAGC
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                  61693221 13 + 150158102 TAGAGAGTATGGC
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58367055 13 + 146850525 TAGAGAGTATGGC
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287591 13 + 139301422 TAGAGAGTATGGC
i chlSab2.chr8                 C 0 C 0
s monDom5.chr8                 174086373 13 + 312544902 TTCTGTACTCAAA
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861934_random     57631 13 -    124633 TGCAGTACATAAC
i sarHar1.chr5_GL861934_random C 0 C 0
s taeGut2.chr3                  13879532  9 - 112617285 TA----ATTTAGC
i taeGut2.chr3                 C 0 C 0
s allMis1.JH737798                 79960  6 +    106177 -------TTTAGA
i allMis1.JH737798             C 0 C 0
s cheMyd1.KB478633               2433827  9 +   6037886 CG----GTAAAGC
i cheMyd1.KB478633             C 0 T 723
s xenTro7.KB021650              80766147 13 + 150913983 TGGACTGCTTTAC
i xenTro7.KB021650             N 0 I 3
s astMex1.KB882082               3905059 10 -   8876373 ---actgTCCAGC
i astMex1.KB882082             C 0 C 0
e danRer10.chr6                  4024204  0 -  60272633 C
e ornAna1.Ultra479               3871811 7152 -   6008416 T
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chr1A                 24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195           44258 5209 +     59083 T
e pseHum1.KB221193               9789407 578 +  32995986 T
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375358               1019718 687 +   1462937 T
e falPer1.KB391107               2216004 600 -   3101084 T
e falChe1.KB398074               4263387 600 -   7151304 T
e macEug2.GL059506                  6470  0 +     21939 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr1                  24929349 4997 + 204065131 T
e anaPla1.KB742960                141378  0 +    531124 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e chrPic2.chr2                  18523590 544 -  68452538 T
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T

a score=-270.000000
s hg38.chr8_KI270814v1_alt         79143 48 +    141812 --------------------------------TTTCTTTCATGCAT------TTATGATAAATATTTAAATTTATTAAAGGTAAAA
s panTro4.chr8                  55025688 48 + 143986469 --------------------------------TTTCTTTTATGCAT------TTATGGTACATATTTGAATTTGTTATAGGTAAAA
i panTro4.chr8                 C 0 I 32
s ponAbe2.chr8                  59048719 48 + 153482349 --------------------------------TTTCTTTTATGCAT------TTATGataaatatttaaatttattaaaGGTAAAA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48122321 48 + 100215132 --------------------------------TTTCTTTTATGCAT------TTATGATAAATATTTAAATTTATTAAAGGTAAAC
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                  61693234 48 + 150158102 --------------------------------TTTCTTTTATGCAT------TTATGGTACATATTTGAATTTGTTATAGGTAAAA
i rheMac3.chr8                 C 0 I 31
s macFas5.chr8                  58367068 48 + 146850525 --------------------------------TTTCTTTTATGCAT------TTATGGTACATATTTGAATTTGTTATAGGTAAAA
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287604 48 + 139301422 --------------------------------TTTCTTTTATGCAT------TTATGGTACATATTTGAATTTGTTATAGGTAAAA
i chlSab2.chr8                 C 0 C 0
s monDom5.chr8                 174086386 48 + 312544902 --------------------------------GCTGATTGACCTTT------GGAATTTTCTAATTTTTTTTGGTGGGAAAAAGAG
i monDom5.chr8                 C 0 I 1
s sarHar1.chr5_GL861934_random     57644 48 -    124633 --------------------------------CATAAATGAAATAT------CAAAGGTATTAATTACAAATTCTTAGAAAGAGAT
i sarHar1.chr5_GL861934_random C 0 I 44
s taeGut2.chr3                  13879541 39 - 112617285 ----------------------------------TGTTTAATGAAA------TTAGA--AAATATCTAAATTCCCTGCAAA-----
i taeGut2.chr3                 C 0 C 0
s allMis1.JH737798                 79966 42 +    106177 ----------------------------------TTTTCAAAGGAGATTCTCTTTTA--AAATTCCTAAAG---CTAAGAA-----
i allMis1.JH737798             C 0 C 0
s xenTro7.KB021650              80766163 48 + 150913983 --------------------------------TTTTTGGTTTGTAT------ACATGATGTATGTTTAAATTAAATGAAATGAATT
i xenTro7.KB021650             I 3 C 0
s danRer10.chr6                  4024204 23 -  60272633 -------------------------------TTATTTT-------------------------ATTTCAAGCTAC-------AAAA
i danRer10.chr6                C 0 C 0
s astMex1.KB882082               3905069 74 -   8876373 TGTTGTAATAGTGTCGTTTTTCaatgttctgttgttttctatattt------ttagg------gtttaaaagtattttattgaaaa
i astMex1.KB882082             C 0 C 0
e ornAna1.Ultra479               3871811 7152 -   6008416 T
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chr1A                 24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195           44258 5209 +     59083 T
e pseHum1.KB221193               9789407 578 +  32995986 T
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375358               1019718 687 +   1462937 T
e falPer1.KB391107               2216004 600 -   3101084 T
e falChe1.KB398074               4263387 600 -   7151304 T
e macEug2.GL059506                  6470  0 +     21939 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr1                  24929349 4997 + 204065131 T
e anaPla1.KB742960                141378  0 +    531124 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB478633               2433836 723 +   6037886 T
e chrPic2.chr2                  18523590 544 -  68452538 T
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T

a score=-68131.000000
s hg38.chr8_KI270814v1_alt         79191 31 +    141812 GTTTGTTTTTCAA---------------ATATTTTAGCCACTC---AAG
s ponAbe2.chr8                  59048767 30 + 153482349 GTTGGTTTTTCAA---------------ATATTTTAGCCACTC---A-G
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48122369 31 + 100215132 GTTTGTTTTTCAA---------------ATATTTTAGCCACTC---AAG
i nomLeu3.chr16                C 0 C 0
s macFas5.chr8                  58367116 26 + 146850525 -----CTTTTGAA---------------TTATTTTTTTGACTG---AAG
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287652 31 + 139301422 CTTTTGTTTTGAA---------------TTATTTTTTTGACTG---AAG
i chlSab2.chr8                 C 0 C 0
s monDom5.chr8                 174086435 17 + 312544902 --TGCTATTT---------------------------CCATTG---TGA
i monDom5.chr8                 I 1 C 0
s sarHar1.chr5_GL861934_random     57736 31 -    124633 aatccttttttta---------------atttttcaaccacta---tat
i sarHar1.chr5_GL861934_random I 44 C 0
s taeGut2.chr3                  13879580 10 - 112617285 -------------------------------GTTTGCCCAT--------
i taeGut2.chr3                 C 0 C 0
s allMis1.JH737798                 80008 10 +    106177 -------------------------------ACTTGATGAT--------
i allMis1.JH737798             C 0 C 0
s xenTro7.KB021650              80766211 41 + 150913983 -GCCTTTTTTTAAGAAAGTTCTAGGTGGAGAATTTGTGCATG-------
i xenTro7.KB021650             C 0 C 0
s danRer10.chr6                  4024227 22 -  60272633 --------------------------ATGC-GTTTAATAAACTCCAATT
i danRer10.chr6                C 0 C 0
s astMex1.KB882082               3905143 20 -   8876373 --------------------------atgtaGCTTAATCAGTC---aat
i astMex1.KB882082             C 0 C 0
e ornAna1.Ultra479               3871811 7152 -   6008416 T
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chr1A                 24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195           44258 5209 +     59083 T
e pseHum1.KB221193               9789407 578 +  32995986 T
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375358               1019718 687 +   1462937 T
e falPer1.KB391107               2216004 600 -   3101084 T
e falChe1.KB398074               4263387 600 -   7151304 T
e macEug2.GL059506                  6470  0 +     21939 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr1                  24929349 4997 + 204065131 T
e anaPla1.KB742960                141378  0 +    531124 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB478633               2433836 723 +   6037886 T
e chrPic2.chr2                  18523590 544 -  68452538 T
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e rheMac3.chr8                  61693282 31 + 150158102 I
e panTro4.chr8                  55025736 32 + 143986469 I

a score=-9963.000000
s hg38.chr8_KI270814v1_alt         79222 6 +    141812 -TTTTTG
s panTro4.chr8                  55025768 6 + 143986469 -TTTTTT
i panTro4.chr8                 I 32 C 0
s ponAbe2.chr8                  59048797 6 + 153482349 -TTTTTG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48122400 6 + 100215132 -TTTTTG
i nomLeu3.chr16                C 0 C 0
s macFas5.chr8                  58367142 5 + 146850525 -TATTT-
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287683 5 + 139301422 -TATTT-
i chlSab2.chr8                 C 0 C 0
s monDom5.chr8                 174086452 4 + 312544902 ---TGGG
i monDom5.chr8                 C 0 I 4
s sarHar1.chr5_GL861934_random     57767 4 -    124633 ---tttc
i sarHar1.chr5_GL861934_random C 0 I 7
s xenTro7.KB021650              80766252 6 + 150913983 -TTTTTG
i xenTro7.KB021650             C 0 C 0
s danRer10.chr6                  4024249 6 -  60272633 ACTCTG-
i danRer10.chr6                C 0 C 0
s astMex1.KB882082               3905163 6 -   8876373 attttg-
i astMex1.KB882082             C 0 C 0
e ornAna1.Ultra479               3871811 7152 -   6008416 T
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chr1A                 24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195           44258 5209 +     59083 T
e pseHum1.KB221193               9789407 578 +  32995986 T
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375358               1019718 687 +   1462937 T
e allMis1.JH737798                 80018 0 +    106177 C
e falPer1.KB391107               2216004 600 -   3101084 T
e falChe1.KB398074               4263387 600 -   7151304 T
e macEug2.GL059506                  6470 0 +     21939 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr1                  24929349 4997 + 204065131 T
e anaPla1.KB742960                141378 0 +    531124 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB478633               2433836 723 +   6037886 T
e chrPic2.chr2                  18523590 544 -  68452538 T
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr3                  13879590 0 - 112617285 C
e rheMac3.chr8                  61693282 31 + 150158102 I

a score=10838.000000
s hg38.chr8_KI270814v1_alt         79228 27 +    141812 TTCTTTCTAATTAGTGTAA--AACAACA--C
s panTro4.chr8                  55025774 27 + 143986469 TTCTTTCAAAGTAGTGTAC--AACAACA--C
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59048803 27 + 153482349 TTCTTTCTAATTAGTGTAA--AACAACA--C
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48122406 27 + 100215132 TTCTTTCTATTTAGTGTAA--AACAACA--C
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                  61693313 27 + 150158102 TTTTTTCTAACTAGTGTAC--AACAACA--C
i rheMac3.chr8                 I 31 C 0
s macFas5.chr8                  58367147 27 + 146850525 TTTTTTCTAACTAGTGTAC--AACAACA--C
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287688 27 + 139301422 TTTTTTCTAACTAGTGTAC--AGCAACA--C
i chlSab2.chr8                 C 0 C 0
s monDom5.chr8                 174086460 19 + 312544902 ----------CCAGTGACTTGGCAATTT--A
i monDom5.chr8                 I 4 C 0
s sarHar1.chr5_GL861934_random     57778 29 -    124633 tattttcaaaccattgtatttGGGGACT--A
i sarHar1.chr5_GL861934_random I 7 C 0
s taeGut2.chr3                  13879590 11 - 112617285 ----------------CAG--GATAATA--T
i taeGut2.chr3                 C 0 C 0
s allMis1.JH737798                 80018 15 +    106177 --------------TGCAT--TATCACAGCT
i allMis1.JH737798             C 0 C 0
s danRer10.chr6                  4024255 20 -  60272633 CTTGTATAAT-------AA--AAAAATA--T
i danRer10.chr6                C 0 C 0
s astMex1.KB882082               3905169 27 -   8876373 ttcattaaaTTCACAGGAA--GGCAATA--C
i astMex1.KB882082             C 0 N 0
e xenTro7.KB021650              80766258  0 + 150913983 C
e ornAna1.Ultra479               3871811 7152 -   6008416 T
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chr1A                 24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195           44258 5209 +     59083 T
e pseHum1.KB221193               9789407 578 +  32995986 T
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375358               1019718 687 +   1462937 T
e falPer1.KB391107               2216004 600 -   3101084 T
e falChe1.KB398074               4263387 600 -   7151304 T
e macEug2.GL059506                  6470  0 +     21939 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr1                  24929349 4997 + 204065131 T
e anaPla1.KB742960                141378  0 +    531124 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB478633               2433836 723 +   6037886 T
e chrPic2.chr2                  18523590 544 -  68452538 T
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T

a score=43160.000000
s hg38.chr8_KI270814v1_alt         79255 43 +    141812 AGAAAAGCAAAATGTGCCTGCATA-------------AACTG---------AGT--------CAACATGTAAA
s panTro4.chr8                  55025801 43 + 143986469 AGGAAAGCAAAGTTGGCCTGCAta-------------aatta---------agc--------caacgtgtaaa
i panTro4.chr8                 C 0 T 24898
s ponAbe2.chr8                  59048830 43 + 153482349 AGAAAAGCAAAATGTGCCTGCATA-------------AACTG---------AGT--------CAACATGTAAA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48122433 43 + 100215132 AGAAAAGCAAAATGTGCCTGCATA-------------AACTG---------AGT--------CAACATGTGAA
i nomLeu3.chr16                C 0 C 0
s rheMac3.chr8                  61693340 43 + 150158102 AGGAAAGCAAAGTTGGCCTGCATA-------------AATTG---------Agc--------caacatgtaaa
i rheMac3.chr8                 C 0 T 6467
s macFas5.chr8                  58367174 43 + 146850525 AGGAAAGCAAAGTTGGCCTGCATA-------------AATTG---------Agc--------caacatgtaaa
i macFas5.chr8                 C 0 T 6565
s chlSab2.chr8                  53287715 43 + 139301422 AGGAAAGCAAAGTTGGCCTACATA-------------AATTG---------AGC--------CAACATGTAAA
i chlSab2.chr8                 C 0 T 6649
s monDom5.chr8                 174086479 43 + 312544902 ACCAGAGCATAGATTGTTAACCTG-------------GATTG---------ATT--------AACTTTATTaa
i monDom5.chr8                 C 0 I 1
s sarHar1.chr5_GL861934_random     57807 42 -    124633 AGAACACCAGAAATGGCT---CTG-------------TAATg-------taagt--------aaattatttaa
i sarHar1.chr5_GL861934_random C 0 I 1
s taeGut2.chr3                  13879601 36 - 112617285 A-------AAAATGTGTTTTCACA-------------AATGG---------AGT--------CAACAAATAAC
i taeGut2.chr3                 C 0 I 10
s allMis1.JH737798                 80033 57 +    106177 A-------AAAGTTTACTTTTAAAAAAAGATTATATTAGTGA---------AGCAGCACTTGTGACAAACAGG
i allMis1.JH737798             C 0 I 10
s xenTro7.KB021650              80766258 41 + 150913983 -----------ACATGTCTGTGTA-------------TGTGGCACCCTTTAAGC--------CCACTTGGCAT
i xenTro7.KB021650             C 0 C 0
s danRer10.chr6                  4024275 43 -  60272633 AAATTATTATATTTTAATTAAACA-------------AATAA---------AAC--------CAGCAAACAAA
i danRer10.chr6                C 0 C 0
e ornAna1.Ultra479               3871811 7152 -   6008416 T
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chr1A                 24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195           44258 5209 +     59083 T
e pseHum1.KB221193               9789407 578 +  32995986 T
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375358               1019718 687 +   1462937 T
e falPer1.KB391107               2216004 600 -   3101084 T
e falChe1.KB398074               4263387 600 -   7151304 T
e macEug2.GL059506                  6470  0 +     21939 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr1                  24929349 4997 + 204065131 T
e anaPla1.KB742960                141378  0 +    531124 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB478633               2433836 723 +   6037886 T
e chrPic2.chr2                  18523590 544 -  68452538 T
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T

a score=-8453.000000
s hg38.chr8_KI270814v1_alt         79298  3 +    141812 CCT---------------
s ponAbe2.chr8                  59048873  3 + 153482349 CCT---------------
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48122476  3 + 100215132 CCT---------------
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99335129  3 + 108792865 CTT---------------
i calJac3.chr14                N 0 C 0
s saiBol1.JH378126              24001545  3 +  27210278 CTT---------------
i saiBol1.JH378126             N 0 C 0
s pteAle1.KB030580              19406893  3 -  23789964 CTT---------------
i pteAle1.KB030580             N 0 C 0
s monDom5.chr8                 174086523  3 + 312544902 cct---------------
i monDom5.chr8                 I 1 I 2
s sarHar1.chr5_GL861934_random     57850  3 -    124633 ctt---------------
i sarHar1.chr5_GL861934_random I 1 I 2
s taeGut2.chr3                  13879647  2 - 112617285 CC----------------
i taeGut2.chr3                 I 10 C 0
s allMis1.JH737798                 80100  2 +    106177 CC----------------
i allMis1.JH737798             I 10 C 0
s xenTro7.KB021650              80766299  1 + 150913983 --T---------------
i xenTro7.KB021650             C 0 I 2
s danRer10.chr6                  4024318 16 -  60272633 --TTGAGAAAGCAATAAT
i danRer10.chr6                C 0 C 0
e ornAna1.Ultra479               3871811 7152 -   6008416 T
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chr1A                 24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195           44258 5209 +     59083 T
e pseHum1.KB221193               9789407 578 +  32995986 T
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375358               1019718 687 +   1462937 T
e falPer1.KB391107               2216004 600 -   3101084 T
e falChe1.KB398074               4263387 600 -   7151304 T
e macEug2.GL059506                  6470  0 +     21939 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr1                  24929349 4997 + 204065131 T
e anaPla1.KB742960                141378  0 +    531124 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB478633               2433836 723 +   6037886 T
e chrPic2.chr2                  18523590 544 -  68452538 T
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=9673.000000
s hg38.chr8_KI270814v1_alt         79301 9 +    141812 TTTGATATT
s ponAbe2.chr8                  59048876 9 + 153482349 TTTGATATT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48122479 9 + 100215132 TTTGATATT
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99335132 9 + 108792865 TTTGATATT
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24001548 9 +  27210278 TTTGATATT
i saiBol1.JH378126             C 0 C 0
s canFam3.chr17                 57833540 9 -  64289059 TCTGATATT
i canFam3.chr17                N 0 C 0
s odoRosDiv1.KB229025            3027477 9 +   4816872 TCTGATATT
i odoRosDiv1.KB229025          N 0 C 0
s pteAle1.KB030580              19406896 9 -  23789964 TTTGATATT
i pteAle1.KB030580             C 0 C 0
s monDom5.chr8                 174086528 7 + 312544902 tcttctg--
i monDom5.chr8                 I 2 C 0
s sarHar1.chr5_GL861934_random     57855 7 -    124633 acttata--
i sarHar1.chr5_GL861934_random I 2 C 0
s taeGut2.chr3                  13879649 9 - 112617285 TTTAATATC
i taeGut2.chr3                 C 0 I 5
s allMis1.JH737798                 80102 9 +    106177 GAGAGACCC
i allMis1.JH737798             C 0 I 5
s xenTro7.KB021650              80766302 9 + 150913983 ATTAACATG
i xenTro7.KB021650             I 2 I 1
s danRer10.chr6                  4024334 9 -  60272633 ATTTATGTG
i danRer10.chr6                C 0 C 0
e ornAna1.Ultra479               3871811 7152 -   6008416 T
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chr1A                 24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195           44258 5209 +     59083 T
e pseHum1.KB221193               9789407 578 +  32995986 T
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375358               1019718 687 +   1462937 T
e falPer1.KB391107               2216004 600 -   3101084 T
e falChe1.KB398074               4263387 600 -   7151304 T
e macEug2.GL059506                  6470 0 +     21939 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr1                  24929349 4997 + 204065131 T
e anaPla1.KB742960                141378 0 +    531124 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB478633               2433836 723 +   6037886 T
e chrPic2.chr2                  18523590 544 -  68452538 T
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=8281.000000
s hg38.chr8_KI270814v1_alt         79310 1 +    141812 T
s ponAbe2.chr8                  59048885 1 + 153482349 T
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48122488 1 + 100215132 T
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99335141 1 + 108792865 T
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24001557 1 +  27210278 T
i saiBol1.JH378126             C 0 C 0
s canFam3.chr17                 57833549 1 -  64289059 T
i canFam3.chr17                C 0 I 4
s odoRosDiv1.KB229025            3027486 1 +   4816872 T
i odoRosDiv1.KB229025          C 0 I 4
s pteAle1.KB030580              19406905 1 -  23789964 T
i pteAle1.KB030580             C 0 I 4
s dasNov3.JH567436               1025970 1 -   2788317 T
i dasNov3.JH567436             N 0 C 0
s monDom5.chr8                 174086535 1 + 312544902 t
i monDom5.chr8                 C 0 I 6
s sarHar1.chr5_GL861934_random     57862 1 -    124633 t
i sarHar1.chr5_GL861934_random C 0 C 0
s taeGut2.chr3                  13879663 1 - 112617285 T
i taeGut2.chr3                 I 5 C 0
s allMis1.JH737798                 80116 1 +    106177 T
i allMis1.JH737798             I 5 C 0
s danRer10.chr6                  4024343 1 -  60272633 T
i danRer10.chr6                C 0 C 0
e xenTro7.KB021650              80766311 1 + 150913983 I
e ornAna1.Ultra479               3871811 7152 -   6008416 T
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chr1A                 24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195           44258 5209 +     59083 T
e pseHum1.KB221193               9789407 578 +  32995986 T
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375358               1019718 687 +   1462937 T
e falPer1.KB391107               2216004 600 -   3101084 T
e falChe1.KB398074               4263387 600 -   7151304 T
e macEug2.GL059506                  6470 0 +     21939 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr1                  24929349 4997 + 204065131 T
e anaPla1.KB742960                141378 0 +    531124 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB478633               2433836 723 +   6037886 T
e chrPic2.chr2                  18523590 544 -  68452538 T
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=12799.000000
s hg38.chr8_KI270814v1_alt         79311 7 +    141812 ATTATTA
s ponAbe2.chr8                  59048886 7 + 153482349 ATTATTA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48122489 7 + 100215132 ATTATTA
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99335142 3 + 108792865 ATT----
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24001558 3 +  27210278 ATT----
i saiBol1.JH378126             C 0 C 0
s camFer1.KB017763               2800480 7 -   6207710 ATGGTTA
i camFer1.KB017763             N 0 C 0
s canFam3.chr17                 57833554 7 -  64289059 ACTGTTA
i canFam3.chr17                I 4 I 4
s odoRosDiv1.KB229025            3027491 7 +   4816872 ACTGTTA
i odoRosDiv1.KB229025          I 4 I 4
s pteAle1.KB030580              19406910 7 -  23789964 ACTGTTA
i pteAle1.KB030580             I 4 I 36
s dasNov3.JH567436               1025971 4 -   2788317 ---GCTA
i dasNov3.JH567436             C 0 I 3
s monDom5.chr8                 174086542 7 + 312544902 attgata
i monDom5.chr8                 I 6 C 0
s sarHar1.chr5_GL861934_random     57863 7 -    124633 attttta
i sarHar1.chr5_GL861934_random C 0 C 0
s taeGut2.chr3                  13879664 7 - 112617285 ATTCTTA
i taeGut2.chr3                 C 0 C 0
s allMis1.JH737798                 80117 7 +    106177 TTTATCA
i allMis1.JH737798             C 0 C 0
s xenTro7.KB021650              80766312 7 + 150913983 TTTAGTA
i xenTro7.KB021650             I 1 C 0
s danRer10.chr6                  4024344 7 -  60272633 ATTATTT
i danRer10.chr6                C 0 C 0
e ornAna1.Ultra479               3871811 7152 -   6008416 T
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chr1A                 24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195           44258 5209 +     59083 T
e pseHum1.KB221193               9789407 578 +  32995986 T
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375358               1019718 687 +   1462937 T
e falPer1.KB391107               2216004 600 -   3101084 T
e falChe1.KB398074               4263387 600 -   7151304 T
e macEug2.GL059506                  6470 0 +     21939 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr1                  24929349 4997 + 204065131 T
e anaPla1.KB742960                141378 0 +    531124 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB478633               2433836 723 +   6037886 T
e chrPic2.chr2                  18523590 544 -  68452538 T
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=5857.000000
s hg38.chr8_KI270814v1_alt         79318 8 +    141812 AATAAGTT--
s ponAbe2.chr8                  59048893 8 + 153482349 AATAAGTT--
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48122496 8 + 100215132 AATAAGTT--
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99335145 4 + 108792865 ----AAAT--
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24001561 4 +  27210278 ----AAAT--
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19206360 8 -  22931326 AATAAGAT--
i vicPac2.KB632437             N 0 C 0
s camFer1.KB017763               2800487 8 -   6207710 ATTAAGAC--
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10835978 8 +  17242564 AATAAGAT--
i orcOrc1.KB316907             N 0 C 0
s equCab2.chr15                 84029669 8 +  91571448 AATTAGAT--
i equCab2.chr15                N 0 C 0
s cerSim1.JH767782               6802767 8 -  14545593 AATAAGAC--
i cerSim1.JH767782             N 0 C 0
s canFam3.chr17                 57833565 8 -  64289059 AATAAGAT--
i canFam3.chr17                I 4 C 0
s odoRosDiv1.KB229025            3027502 8 +   4816872 AGTAAGAT--
i odoRosDiv1.KB229025          I 4 C 0
s pteAle1.KB030580              19406953 8 -  23789964 AGTGAGAT--
i pteAle1.KB030580             I 36 C 0
s dasNov3.JH567436               1025978 8 -   2788317 AATAAGAT--
i dasNov3.JH567436             I 3 C 0
s monDom5.chr8                 174086549 5 + 312544902 ---ctaag--
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861934_random     57870 5 -    124633 ---aagat--
i sarHar1.chr5_GL861934_random C 0 C 0
s taeGut2.chr3                  13879671 6 - 112617285 --AACAAT--
i taeGut2.chr3                 C 0 I 44
s allMis1.JH737798                 80124 6 +    106177 --TGAAAC--
i allMis1.JH737798             C 0 I 2
s xenTro7.KB021650              80766319 7 + 150913983 AATATGT---
i xenTro7.KB021650             C 0 C 0
s danRer10.chr6                  4024351 8 -  60272633 --TATTTTCT
i danRer10.chr6                C 0 C 0
e ornAna1.Ultra479               3871811 7152 -   6008416 T
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chr1A                 24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195           44258 5209 +     59083 T
e pseHum1.KB221193               9789407 578 +  32995986 T
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375358               1019718 687 +   1462937 T
e falPer1.KB391107               2216004 600 -   3101084 T
e falChe1.KB398074               4263387 600 -   7151304 T
e macEug2.GL059506                  6470 0 +     21939 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr1                  24929349 4997 + 204065131 T
e anaPla1.KB742960                141378 0 +    531124 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB478633               2433836 723 +   6037886 T
e chrPic2.chr2                  18523590 544 -  68452538 T
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=59818.000000
s hg38.chr8_KI270814v1_alt         79326 18 +    141812 atttggcaatgtatcaaa--
s ponAbe2.chr8                  59048901 18 + 153482349 atttggcaatgtatcaaa--
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48122504 18 + 100215132 atttggcaatgtatcaaa--
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99335149 18 + 108792865 atttggcaatgtatcaaa--
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24001565 18 +  27210278 atttggcaatgtatcaaa--
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19206368 18 -  22931326 GCttggccatgcgtcaaa--
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2800495 18 -   6207710 GCTTGGCCACACGtcaaa--
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10835986 18 +  17242564 ACTTGGCCATGCGTCAAA--
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84029677 18 +  91571448 AGttggcaatgtgtcaaa--
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6802775 18 -  14545593 TCttggcaatgagtcaaa--
i cerSim1.JH767782             C 0 C 0
s canFam3.chr17                 57833573 18 -  64289059 GCTTGGCAGCGTGTCAAA--
i canFam3.chr17                C 0 C 0
s odoRosDiv1.KB229025            3027510 18 +   4816872 GCCTGGCAATGTGTCAAA--
i odoRosDiv1.KB229025          C 0 I 9
s pteAle1.KB030580              19406961 18 -  23789964 CCTGggcaatgtgccaga--
i pteAle1.KB030580             C 0 C 0
s dasNov3.JH567436               1025986 18 -   2788317 Gtttggcaatatatcaaa--
i dasNov3.JH567436             C 0 C 0
s monDom5.chr8                 174086554 12 + 312544902 tattggttccaa--------
i monDom5.chr8                 C 0 N 0
s sarHar1.chr5_GL861934_random     57875 12 -    124633 ttttgccTTTAT--------
i sarHar1.chr5_GL861934_random C 0 I 3
s allMis1.JH737798                 80132  8 +    106177 ACATAGCA------------
i allMis1.JH737798             I 2 C 0
s xenTro7.KB021650              80766326 11 + 150913983 -------ACTGCATCCCA--
i xenTro7.KB021650             C 0 I 2
s danRer10.chr6                  4024359 16 -  60272633 ----GTTTAAACAGCAAAAC
i danRer10.chr6                C 0 C 0
e ornAna1.Ultra479               3871811 7152 -   6008416 T
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chr1A                 24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195           44258 5209 +     59083 T
e pseHum1.KB221193               9789407 578 +  32995986 T
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375358               1019718 687 +   1462937 T
e falPer1.KB391107               2216004 600 -   3101084 T
e falChe1.KB398074               4263387 600 -   7151304 T
e macEug2.GL059506                  6470  0 +     21939 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr1                  24929349 4997 + 204065131 T
e anaPla1.KB742960                141378  0 +    531124 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB478633               2433836 723 +   6037886 T
e chrPic2.chr2                  18523590 544 -  68452538 T
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr3                  13879677 44 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-9229.000000
s hg38.chr8_KI270814v1_alt        79344 6 +    141812 -ttttta
s ponAbe2.chr8                 59048919 6 + 153482349 -ttttta
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                48122522 6 + 100215132 -ttttta
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                99335167 6 + 108792865 -ttttta
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126             24001583 6 +  27210278 -ttttta
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437             19206386 6 -  22931326 -cattaa
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763              2800513 6 -   6207710 -cattaa
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907             10836004 6 +  17242564 -CGATaa
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                84029695 6 +  91571448 -ctttaa
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782              6802793 6 -  14545593 -ctttaa
i cerSim1.JH767782             C 0 C 0
s canFam3.chr17                57833591 6 -  64289059 -TGGTTA
i canFam3.chr17                C 0 I 22
s odoRosDiv1.KB229025           3027537 6 +   4816872 -TGGTTA
i odoRosDiv1.KB229025          I 9 I 36
s pteAle1.KB030580             19406979 6 -  23789964 -ctttac
i pteAle1.KB030580             C 0 C 0
s dasNov3.JH567436              1026004 6 -   2788317 -atttaa
i dasNov3.JH567436             C 0 C 0
s sarHar1.chr5_GL861934_random    57890 5 -    124633 --TTCCA
i sarHar1.chr5_GL861934_random I 3 I 1
s allMis1.JH737798                80140 5 +    106177 --TTTCA
i allMis1.JH737798             C 0 C 0
s xenTro7.KB021650             80766339 4 + 150913983 -CCTT--
i xenTro7.KB021650             I 2 C 0
s danRer10.chr6                 4024375 6 -  60272633 CTTTTT-
i danRer10.chr6                C 0 C 0
e ornAna1.Ultra479              3871811 7152 -   6008416 T
e tetNig2.chr13                 4300044 851 -  13302670 T
e punNye1.JH419232              4767720 338 +   5065651 T
e mayZeb1.JH720588              2493684 338 +   2778784 T
e hapBur1.JH425411              1657068 338 +   1983257 T
e neoBri1.JH422276              4185134 338 -  16571924 T
e araMac1.AOUJ01470298              637 0 -       895 I
e takFla1.KE120500               511214 428 +    663757 T
e fr3.chr9                      3741472 428 -  13922460 T
e ficAlb2.chr1A                24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195          44258 5209 +     59083 T
e pseHum1.KB221193              9789407 578 +  32995986 T
e zonAlb1.KB913045             12582000 6532 +  16390125 T
e colLiv1.KB375358              1019718 687 +   1462937 T
e falPer1.KB391107              2216004 600 -   3101084 T
e falChe1.KB398074              4263387 600 -   7151304 T
e macEug2.GL059506                 6470 0 +     21939 I
e galGal4.chr1                 24067632 542 + 195276750 T
e geoFor1.JH739914              5157724 543 -   7168866 T
e melGal1.chr1                 24929349 4997 + 204065131 T
e anaPla1.KB742960               141378 0 +    531124 I
e amaVit1.KB277496                 7625 3737 -     10329 T
e apaSpi1.KB929668              5961501 297 -  12308914 T
e cheMyd1.KB478633              2433836 723 +   6037886 T
e chrPic2.chr2                 18523590 544 -  68452538 T
e pelSin1.JH211373              2650239 0 -   4257854 I
e melUnd1.JH556589              7680049 6397 -   7952740 T
e taeGut2.chr3                 13879677 44 - 112617285 I
e rheMac3.chr8                 61693383 6467 + 150158102 T
e macFas5.chr8                 58367217 6565 + 146850525 T
e chlSab2.chr8                 53287758 6649 + 139301422 T
e panTro4.chr8                 55025844 24898 + 143986469 T

a score=32387.000000
s hg38.chr8_KI270814v1_alt        79350 6 +    141812 aatgtg
s ponAbe2.chr8                 59048925 6 + 153482349 aatgtg
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                48122528 6 + 100215132 aatgtg
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                99335173 6 + 108792865 aacata
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126             24001589 6 +  27210278 aacata
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437             19206392 6 -  22931326 aatgca
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763              2800519 6 -   6207710 aatgta
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907             10836010 6 +  17242564 aatgca
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                84029701 6 +  91571448 aatgtg
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782              6802799 6 -  14545593 aatgtg
i cerSim1.JH767782             C 0 C 0
s canFam3.chr17                57833619 6 -  64289059 aatgtg
i canFam3.chr17                I 22 C 0
s musFur1.GL896914             13605508 6 -  19722643 Aaaatg
i musFur1.GL896914             N 0 C 0
s odoRosDiv1.KB229025           3027579 6 +   4816872 aacgtg
i odoRosDiv1.KB229025          I 36 C 0
s pteAle1.KB030580             19406985 6 -  23789964 aatgtg
i pteAle1.KB030580             C 0 C 0
s dasNov3.JH567436              1026010 6 -   2788317 aaggta
i dasNov3.JH567436             C 0 C 0
s sarHar1.chr5_GL861934_random    57896 6 -    124633 ATTGTA
i sarHar1.chr5_GL861934_random I 1 C 0
s allMis1.JH737798                80145 6 +    106177 CAAGTG
i allMis1.JH737798             C 0 C 0
s xenTro7.KB021650             80766343 2 + 150913983 AA----
i xenTro7.KB021650             C 0 C 0
s danRer10.chr6                 4024381 6 -  60272633 AATTTC
i danRer10.chr6                C 0 C 0
e ornAna1.Ultra479              3871811 7152 -   6008416 T
e tetNig2.chr13                 4300044 851 -  13302670 T
e punNye1.JH419232              4767720 338 +   5065651 T
e mayZeb1.JH720588              2493684 338 +   2778784 T
e hapBur1.JH425411              1657068 338 +   1983257 T
e neoBri1.JH422276              4185134 338 -  16571924 T
e araMac1.AOUJ01470298              637 0 -       895 I
e takFla1.KE120500               511214 428 +    663757 T
e fr3.chr9                      3741472 428 -  13922460 T
e ficAlb2.chr1A                24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195          44258 5209 +     59083 T
e pseHum1.KB221193              9789407 578 +  32995986 T
e zonAlb1.KB913045             12582000 6532 +  16390125 T
e colLiv1.KB375358              1019718 687 +   1462937 T
e falPer1.KB391107              2216004 600 -   3101084 T
e falChe1.KB398074              4263387 600 -   7151304 T
e macEug2.GL059506                 6470 0 +     21939 I
e galGal4.chr1                 24067632 542 + 195276750 T
e geoFor1.JH739914              5157724 543 -   7168866 T
e melGal1.chr1                 24929349 4997 + 204065131 T
e anaPla1.KB742960               141378 0 +    531124 I
e amaVit1.KB277496                 7625 3737 -     10329 T
e apaSpi1.KB929668              5961501 297 -  12308914 T
e cheMyd1.KB478633              2433836 723 +   6037886 T
e chrPic2.chr2                 18523590 544 -  68452538 T
e pelSin1.JH211373              2650239 0 -   4257854 I
e melUnd1.JH556589              7680049 6397 -   7952740 T
e taeGut2.chr3                 13879677 44 - 112617285 I
e rheMac3.chr8                 61693383 6467 + 150158102 T
e macFas5.chr8                 58367217 6565 + 146850525 T
e chlSab2.chr8                 53287758 6649 + 139301422 T
e panTro4.chr8                 55025844 24898 + 143986469 T

a score=25742.000000
s hg38.chr8_KI270814v1_alt        79356 7 +    141812 tgtccct
s ponAbe2.chr8                 59048931 7 + 153482349 tgtccct
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                48122534 7 + 100215132 tgtccct
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                99335179 7 + 108792865 tgtacat
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126             24001595 7 +  27210278 tgtacat
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437             19206398 7 -  22931326 cataccc
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763              2800525 7 -   6207710 cgtaccc
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907             10836016 7 +  17242564 cgtaccc
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                84029707 6 +  91571448 tgta-cc
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782              6802805 7 -  14545593 tataccc
i cerSim1.JH767782             C 0 C 0
s canFam3.chr17                57833625 7 -  64289059 tggacct
i canFam3.chr17                C 0 C 0
s musFur1.GL896914             13605514 7 -  19722643 tagacct
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025           3027585 7 +   4816872 tggacct
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580             19406991 7 -  23789964 tgtaccc
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20          27612503 7 -  46401353 tGtaccc
i loxAfr3.scaffold_20          N 0 C 0
s triMan1.JH594629              9959796 7 +  24341844 tgtaccc
i triMan1.JH594629             N 0 C 0
s dasNov3.JH567436              1026016 7 -   2788317 tgtatcc
i dasNov3.JH567436             C 0 C 0
s sarHar1.chr5_GL861934_random    57902 2 -    124633 -AT----
i sarHar1.chr5_GL861934_random C 0 C 0
s allMis1.JH737798                80151 2 +    106177 --TA---
i allMis1.JH737798             C 0 C 0
s xenTro7.KB021650             80766345 6 + 150913983 -GCTCCT
i xenTro7.KB021650             C 0 C 0
s danRer10.chr6                 4024387 7 -  60272633 TGTACCT
i danRer10.chr6                C 0 C 0
e ornAna1.Ultra479              3871811 7152 -   6008416 T
e tetNig2.chr13                 4300044 851 -  13302670 T
e punNye1.JH419232              4767720 338 +   5065651 T
e mayZeb1.JH720588              2493684 338 +   2778784 T
e hapBur1.JH425411              1657068 338 +   1983257 T
e neoBri1.JH422276              4185134 338 -  16571924 T
e araMac1.AOUJ01470298              637 0 -       895 I
e takFla1.KE120500               511214 428 +    663757 T
e fr3.chr9                      3741472 428 -  13922460 T
e ficAlb2.chr1A                24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195          44258 5209 +     59083 T
e pseHum1.KB221193              9789407 578 +  32995986 T
e zonAlb1.KB913045             12582000 6532 +  16390125 T
e colLiv1.KB375358              1019718 687 +   1462937 T
e falPer1.KB391107              2216004 600 -   3101084 T
e falChe1.KB398074              4263387 600 -   7151304 T
e macEug2.GL059506                 6470 0 +     21939 I
e galGal4.chr1                 24067632 542 + 195276750 T
e geoFor1.JH739914              5157724 543 -   7168866 T
e melGal1.chr1                 24929349 4997 + 204065131 T
e anaPla1.KB742960               141378 0 +    531124 I
e amaVit1.KB277496                 7625 3737 -     10329 T
e apaSpi1.KB929668              5961501 297 -  12308914 T
e cheMyd1.KB478633              2433836 723 +   6037886 T
e chrPic2.chr2                 18523590 544 -  68452538 T
e pelSin1.JH211373              2650239 0 -   4257854 I
e melUnd1.JH556589              7680049 6397 -   7952740 T
e taeGut2.chr3                 13879677 44 - 112617285 I
e rheMac3.chr8                 61693383 6467 + 150158102 T
e macFas5.chr8                 58367217 6565 + 146850525 T
e chlSab2.chr8                 53287758 6649 + 139301422 T
e panTro4.chr8                 55025844 24898 + 143986469 T

a score=741094.000000
s hg38.chr8_KI270814v1_alt        79363 102 +    141812 tttgacctagaaattctact-------------cccaggaattt----ctcct--aagaagataatcagaaa---------agtt--------------tac---------------aaagat-gaatagaaaagaa-gagtcactgcagcc---ttatttgta
s ponAbe2.chr8                 59048938 102 + 153482349 tttgacctagaaattctact-------------cccaggaattt----ctcct--aagaagataatcagaaa---------agtt--------------tac---------------aaagat-gaatagaaaagaa-gagtcaccgcagcc---ttatttgta
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                48122541 102 + 100215132 tttgacctagaaattctgct-------------cccaggaattt----ctcct--aagaagatagtgagaaa---------agtt--------------tac---------------aaagat-gaatagaaaagaa-gagtcaccacagcc---ttatttgta
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                99335186 102 + 108792865 tttgacctagaaattctact-------------cccaggaattt----actct--aagaagataaccataaa---------agtt--------------tac---------------aaagat-gaatagaaaagaa-gatacactgctatc---ctgattata
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126             24001602 102 +  27210278 tttgacctagaaattctact-------------cccaggaattt----attct--aagaagataatcataaa---------agtt--------------tac---------------aaagat-gaacagaaaagaa-gatacactgctaac---ttgattata
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541             21181034 100 -  23169006 tttgacccacaggcgctgag-------------cc--Agaacat----cttct--aagaagataatcacaga---------agtt--------------tac---------------aaagat-gaacggaaaagaa-gactcactgcagcc---ttgcttgtg
i otoGar3.GL873541             N 0 C 0
s vicPac2.KB632437             19206405 102 -  22931326 tttgacctagaaattctact-------------taccggaactt----atcct--aagaagataatcacaaa---------catt--------------tac---------------aaagat-gaatagaaaagga-ggttcactgcagag---ctgtttgta
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763              2800532 102 -   6207710 tttgacctagaaattctact-------------tactggaactt----atcat--aagaagataatcacaaa---------cgtt--------------tac---------------aaagat-gaatagaaaagga-ggttcactgcagag---ctgtttgta
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907             10836023 102 +  17242564 tttgacccagaaattctact-------------tacgggaactt----attct--gagaagataatcataaa---------agtt--------------tac---------------aaagat-gaatagaaaagaa-ggttcgttgcagac---ttgtttgta
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                84029713 106 +  91571448 tttgacctagaaattctact-------------tacaggaactt-gagattct--aagaagataatcatgaa---------agct--------------tac---------------aaagataaaatagaaaagaa-gattccctgcagac---ttgtttgta
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782              6802812 107 -  14545593 tttgacctagaaattctact-------------tacaggaacttagagattct--aagaagataatcatgaa---------agtt--------------tac---------------aaaggtaaaatagaaaagga-ggttccttacagac---ttgcttgta
i cerSim1.JH767782             C 0 C 0
s canFam3.chr17                57833632 102 -  64289059 tttgacatagaaattcttct-------------tacaggaactt----attct--aagaagataatcataga---------catt--------------tac---------------aaagat-gaatagataacaa-ggttcagtgcagac---ttgtttgta
i canFam3.chr17                C 0 C 0
s musFur1.GL896914             13605521 107 -  19722643 tttgacacagaaattctact-------------taagggaactt----attctccaagaggataattgtaaa---------agtt--------------tac---------------caagat-gattagaaaacaa-ggttcagtgcagactgtttgtttgta
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025           3027592 104 +   4816872 tttgacatagaacttctact-------------tataggaactt----actctctaagaagatcatcataaa---------agtt--------------tac---------------aaagat-gaacagaaaacaa-ggttcagtgcagac---ttgtttgta
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580             19406998 103 -  23789964 tttgacctggaaattctact-------------tccgggaactt----attct--aagaagacaatcatgaa---------agtc--------------tgc---------------aaagat-gaatccaaaggaagggtccactgcgggc---ttgtttgta
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20          27612510  93 -  46401353 tttgacccagaaattctatt-------------tacaggtagtt---------------agataatcataaa---------agct--------------tac---------------gaagat-gaacagcaaagaa-agttcatcgtagtc---ctgtttgta
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629              9959803 102 +  24341844 tttgacctagatattctatt-------------tacaggtactt----actct--aaggagataatcctaac---------agtt--------------tac---------------aaaaaa-gaacagaaaaaaa-agttcactacagtc---ctgcctgta
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436              1026023  94 -   2788317 tttgacctagaaattctact-------------tgcaggaactt----attct--aaggagataataaaaac---------agca--------------tac---------------agagat-gaaaggaaaagaa-a--------cggcc---ctgtttgaa
i dasNov3.JH567436             C 0 C 0
s sarHar1.chr5_GL861934_random    57904  78 -    124633 TCTGACTTCAAAATACAATT------------------GTATCT----AGAAC--TTGAAGATTATC--------------------------------TAC---------------CAAGAT-CCATGCTAAATCA-----------AACA---CTAATTATA
i sarHar1.chr5_GL861934_random C 0 C 0
s allMis1.JH737798                80153 107 +    106177 TTGGCCTTTAAGACGTTGC----------------CAGCATGTT----TTTTA--AGGGTGACACTTGGCAG---------CAGTACTGTTGCCAGCAATAC---------------GAAGAA-GGAGGAAAAAAAA-------CTGAGGCC---AGATTTACA
i allMis1.JH737798             C 0 T 1661
s xenTro7.KB021650             80766351 119 + 150913983 -CCTGCTGAGAAACGCCGTCAATTAAAGTACTATACTGTGACAT----TTATT--CAGAGAGTTGGCGGAGA---------GGCT--------------TACTACACTGCTACTGAGAAGCGT-GTGGGGGAAAGGA-----------AACC---TTATTTGTT
i xenTro7.KB021650             C 0 C 0
s danRer10.chr6                 4024394  92 -  60272633 ----------GAATACCAAT-------------T----GATTAC----ACCCT-------GAAAACCATAAAGCACTGTTTATTT--------------CAC---------------TCTTAT-ATTTGCATATGAC-ATGTCATGCATGAT---TTATCTATA
i danRer10.chr6                C 0 C 0
e ornAna1.Ultra479              3871811 7152 -   6008416 T
e tetNig2.chr13                 4300044 851 -  13302670 T
e punNye1.JH419232              4767720 338 +   5065651 T
e mayZeb1.JH720588              2493684 338 +   2778784 T
e hapBur1.JH425411              1657068 338 +   1983257 T
e neoBri1.JH422276              4185134 338 -  16571924 T
e araMac1.AOUJ01470298              637   0 -       895 I
e takFla1.KE120500               511214 428 +    663757 T
e fr3.chr9                      3741472 428 -  13922460 T
e ficAlb2.chr1A                24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195          44258 5209 +     59083 T
e pseHum1.KB221193              9789407 578 +  32995986 T
e zonAlb1.KB913045             12582000 6532 +  16390125 T
e colLiv1.KB375358              1019718 687 +   1462937 T
e falPer1.KB391107              2216004 600 -   3101084 T
e falChe1.KB398074              4263387 600 -   7151304 T
e macEug2.GL059506                 6470   0 +     21939 I
e galGal4.chr1                 24067632 542 + 195276750 T
e geoFor1.JH739914              5157724 543 -   7168866 T
e melGal1.chr1                 24929349 4997 + 204065131 T
e anaPla1.KB742960               141378   0 +    531124 I
e amaVit1.KB277496                 7625 3737 -     10329 T
e apaSpi1.KB929668              5961501 297 -  12308914 T
e cheMyd1.KB478633              2433836 723 +   6037886 T
e chrPic2.chr2                 18523590 544 -  68452538 T
e pelSin1.JH211373              2650239   0 -   4257854 I
e melUnd1.JH556589              7680049 6397 -   7952740 T
e taeGut2.chr3                 13879677  44 - 112617285 I
e rheMac3.chr8                 61693383 6467 + 150158102 T
e macFas5.chr8                 58367217 6565 + 146850525 T
e chlSab2.chr8                 53287758 6649 + 139301422 T
e panTro4.chr8                 55025844 24898 + 143986469 T

a score=340991.000000
s hg38.chr8_KI270814v1_alt        79465 54 +    141812 aaagtgaaaaatagcaaca---gcccaaa--tgt---catg--aatggagaattaata-ta------tggt
s ponAbe2.chr8                 59049040 54 + 153482349 aaagtgaaaaatagcaaca---gcccaaa--tgt---catg--aatggagaattaata-ta------tggt
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                48122643 54 + 100215132 aaagtgaaaaatagcaaca---gcccaaa--tgt---catg--aatggagaattaata-ta------ttgt
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                99335288 54 + 108792865 aaagtaaacaatagccaca---gcccaaa--ttt---aatg--agtgga-aattaacatta------cggt
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126             24001704 53 +  27210278 aaagtaaacaatggcaaca---gcccaaa--ttt---aatg--agtgga-aattaaca-ta------tggt
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541             21181134 57 -  23169006 aaagggaaaaaGATCCACAAACACCCCAG--CGT---AATG--AATGGGGAGTTCCGG-TA------TGAT
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437             19206507 54 -  22931326 aaagtgaaaaatggcaaca---acccaaa--cgg---aatg--aatagggaattaaag-ta------cggg
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763              2800634 54 -   6207710 aaagtgaaaaatggcagca---acccaaa--cag---aatg--aatggggaattaaag-ta------cggg
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907             10836125 54 +  17242564 aaagtgaaaagtggcaaca---acctaaa--tgt---aatg--aatggggaattaaag-tg------tggt
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                84029819 53 +  91571448 aaagtgaaaaatggcaata---acccaaa--tgt---aatg--aatggggaatt-aaa-ta------tggc
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782              6802919 53 -  14545593 aaaatgaaaaacggcaaca---acccaaa--tgt---aaag--aatgggggatt-aag-ta------tggt
i cerSim1.JH767782             C 0 C 0
s canFam3.chr17                57833734 51 -  64289059 aaagtaacaaatggc---a---acccaaa--tgt---aatg--aatggaaaattaaag-ta------tggt
i canFam3.chr17                C 0 C 0
s musFur1.GL896914             13605628 51 -  19722643 aaagtaacaaatgac---a---acccaaa--tgt---aatg--aatggaaaattaaag-ta------tggt
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025           3027696 51 +   4816872 aaagtaacaaatggc---a---acccaaa--tgt---aatg--aatggaaaattaaag-ta------tggt
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580             19407101 52 -  23789964 aaagtgcaaaacagc--------cacgac--cgtctcaaag--actggggagttacgg-tg------tggt
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20          27612603 53 -  46401353 aaagtgaaaaatggcaaca---gcccaaa--tgc---aatg--aat-agaaattaaag-tt------tgaa
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629              9959905 54 +  24341844 aaagtgaaaaatggcaata---gcccaaa--tgc---aatg--aatgggaaattaaag-tc------tgga
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436              1026117 54 -   2788317 aaaaagaaaaatggtaata---acctaac--tgc---aatg--aatggggaattaaag-ta------tgct
i dasNov3.JH567436             C 0 C 0
s sarHar1.chr5_GL861934_random    57982 54 -    124633 AATG-GATAGATTGCAA-A---ACTCAGC--AGC---ATTGTTACTTACTAGATGGTA-TA------CTGG
i sarHar1.chr5_GL861934_random C 0 C 0
s xenTro7.KB021650             80766470 58 + 150913983 ----AGCAAGACAGTAAAA---ATTAAAAGTTGT---TATT--TGTGGTTACATTATG-TGAATGATTACT
i xenTro7.KB021650             C 0 C 0
s danRer10.chr6                 4024486 35 -  60272633 ------------------A---AATCATA---GC---AATT--AATTGAAAATTAATA-CA------TGGT
i danRer10.chr6                C 0 N 0
e ornAna1.Ultra479              3871811 7152 -   6008416 T
e tetNig2.chr13                 4300044 851 -  13302670 T
e punNye1.JH419232              4767720 338 +   5065651 T
e mayZeb1.JH720588              2493684 338 +   2778784 T
e hapBur1.JH425411              1657068 338 +   1983257 T
e neoBri1.JH422276              4185134 338 -  16571924 T
e araMac1.AOUJ01470298              637  0 -       895 I
e takFla1.KE120500               511214 428 +    663757 T
e fr3.chr9                      3741472 428 -  13922460 T
e ficAlb2.chr1A                24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195          44258 5209 +     59083 T
e pseHum1.KB221193              9789407 578 +  32995986 T
e zonAlb1.KB913045             12582000 6532 +  16390125 T
e colLiv1.KB375358              1019718 687 +   1462937 T
e allMis1.JH737798                80260 1661 +    106177 T
e falPer1.KB391107              2216004 600 -   3101084 T
e falChe1.KB398074              4263387 600 -   7151304 T
e macEug2.GL059506                 6470  0 +     21939 I
e galGal4.chr1                 24067632 542 + 195276750 T
e geoFor1.JH739914              5157724 543 -   7168866 T
e melGal1.chr1                 24929349 4997 + 204065131 T
e anaPla1.KB742960               141378  0 +    531124 I
e amaVit1.KB277496                 7625 3737 -     10329 T
e apaSpi1.KB929668              5961501 297 -  12308914 T
e cheMyd1.KB478633              2433836 723 +   6037886 T
e chrPic2.chr2                 18523590 544 -  68452538 T
e pelSin1.JH211373              2650239  0 -   4257854 I
e melUnd1.JH556589              7680049 6397 -   7952740 T
e taeGut2.chr3                 13879677 44 - 112617285 I
e rheMac3.chr8                 61693383 6467 + 150158102 T
e macFas5.chr8                 58367217 6565 + 146850525 T
e chlSab2.chr8                 53287758 6649 + 139301422 T
e panTro4.chr8                 55025844 24898 + 143986469 T

a score=156229.000000
s hg38.chr8_KI270814v1_alt        79519  79 +    141812 gcatcc--------------------atac-----------------a-aaaatactgtgcagcgagtaagccaatgaagc-----cc-aaa---atttct-gacatggacat----------tgacata--gcagagt
s ponAbe2.chr8                 59049094  79 + 153482349 gcatcc--------------------atac-----------------a-aaaatactgtgcagcgagtaagccagtgaagc-----cc-aaa---atttct-gacatggacat----------tgacata--acagagt
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                48122697  79 + 100215132 gcatcc--------------------atac-----------------a-aaaatactgcgcagcgagtaaGCCAGTGAAGC-----CC-AAA---ATTTCT-GACATGGACAT----------TGACATA--ACAGAGT
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                99335342  82 + 108792865 gcatcc--------------------atac-----------------agaaaatactgtgcagccactaGGCCAATAAAAC-----CT-ACA---ATTTCT-GACATGGACTT----------CAACATACTAGAGAGT
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126             24001757  82 +  27210278 gcatcc--------------------atac-----------------agaaaatactgtgcagccactaagccaataaaac-----ct-aca---atttct-gacatggactt----------caacatactacagtgt
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541             21181191  76 -  23169006 GCACCC--------------------AACC-----------------A--------TCTGTAGCCACT-GGCTAACAAAAC--------AGA---ATTTCG-GACACAGAGAT--GTC---CATGACATAACAGAGAAG
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437             19206561  90 -  22931326 gcaccc--------------------atac---------------aaa-aaaatgccatgcggccattaggccgccaaagc-----ag-aga---ctttctggacacggaa-gaagtc---tggggcacagcagtgagt
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763              2800688  90 -   6207710 gcaccc--------------------atac---------------aaa-aaaatgccatgcggccttcaggccaacaaagc-----ag-aga---ctttct-gacacggaaggaagtc---tggggcacagcagtgagt
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907             10836179  90 +  17242564 acatcc--------------------acag---------------aga-gaagggctatgtagccattaagccaataaagc-----ag-aga---cttcct-gacatggaaagatgtc---cgtagcacactagtgagt
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                84029872  95 +  91571448 gcatcc--------------------atac-----------aaaaaaa-aaaaagctatgcagccattaagccaataaaac-----agaaga---cttcct-gatatggaaagatctc---cacgacatactactgagt
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782              6802972  91 -  14545593 gcatcc--------------------acac--------------caaa-aaaatgctaggtaaccattaggtcaataatgt-----ag-aga---cttgct-gacaaggaaagatgtc---cacggcatactactgagt
i cerSim1.JH767782             C 0 C 0
s canFam3.chr17                57833785  92 -  64289059 tcagcc--------------------acac-------------acaaa-aaattgctatgtagccatgaagccagtgaagc-----aa-aga---ctttcc-aacatggaaagatgcc---catgacatactcatgagt
i canFam3.chr17                C 0 C 0
s musFur1.GL896914             13605679  90 -  19722643 tcagct--------------------acac-------------ac-aa-aaattgctatgtagccatgaaGCCAATAAATC-----AG-AGA---CTTTCC-GGCACC-GAGAATACC---CATGACATACGAGTGAAT
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025           3027747  80 +   4816872 tcagcc--------------------a--------------------------tgctatgtagccatgaagccaataaagc-----ag-agg---ctttcc-ggcaccaaaggatgcc---catgacatacaagtgagt
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580             19407153  85 -  23789964 gcatcc--------------------agac---------------aga-acatcgctctgcagccatga-gccaacgaagc-----ag-gga---cttcct-gacacaggaagatgca------ggcacac-gctgggt
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20          27612656 107 -  46401353 gcatctcataccaataaaaaaatttttttt----------------ga-aaaatactatgtagccattcagacagtaaagg-----ag-gga---ctttct-gacttgggaagatgcc---catgtcatactaa-gac-
i loxAfr3.scaffold_20          C 0 I 205
s triMan1.JH594629              9959959 103 +  24341844 gcatcccataccaataagaaaa----aaaa----------------ga-aaaatactatgcagccattcagccaataaagc-----ag-aga---ctttct-gacacgggaagatgcc---cgtgtcataCAAa-aac-
i triMan1.JH594629             C 0 I 188
s dasNov3.JH567436              1026171  91 -   2788317 atatcc--------------------aaac----------------aa-aatatactacatagccattaagccaataaagc-----ag-agagatttttct-gaaatggaacgatatc---caagccatattagtgag-
i dasNov3.JH567436             C 0 I 1
s sarHar1.chr5_GL861934_random    58036  80 -    124633 ACTTCT--------------------GGTC----------------AG-GAAAAGATAGGT----------TTACTAATGCTTCTTCA-AGA---ctttgt-tatagaaaaaaaagttttacatgtcatttt-------
i sarHar1.chr5_GL861934_random C 0 C 0
s xenTro7.KB021650             80766528  78 + 150913983 GCTCCT--------------------TTAATAGTGAATAGTAGATAAA-AGAATGCAAAACAAT------ATTATTAAAGA-----TT-AAA---AATCTT-GAAATCCAGCTGT------------------------
i xenTro7.KB021650             C 0 C 0
e ornAna1.Ultra479              3871811 7152 -   6008416 T
e tetNig2.chr13                 4300044 851 -  13302670 T
e punNye1.JH419232              4767720 338 +   5065651 T
e mayZeb1.JH720588              2493684 338 +   2778784 T
e hapBur1.JH425411              1657068 338 +   1983257 T
e neoBri1.JH422276              4185134 338 -  16571924 T
e araMac1.AOUJ01470298              637   0 -       895 I
e takFla1.KE120500               511214 428 +    663757 T
e fr3.chr9                      3741472 428 -  13922460 T
e ficAlb2.chr1A                24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195          44258 5209 +     59083 T
e pseHum1.KB221193              9789407 578 +  32995986 T
e zonAlb1.KB913045             12582000 6532 +  16390125 T
e colLiv1.KB375358              1019718 687 +   1462937 T
e allMis1.JH737798                80260 1661 +    106177 T
e falPer1.KB391107              2216004 600 -   3101084 T
e falChe1.KB398074              4263387 600 -   7151304 T
e macEug2.GL059506                 6470   0 +     21939 I
e galGal4.chr1                 24067632 542 + 195276750 T
e geoFor1.JH739914              5157724 543 -   7168866 T
e melGal1.chr1                 24929349 4997 + 204065131 T
e anaPla1.KB742960               141378   0 +    531124 I
e amaVit1.KB277496                 7625 3737 -     10329 T
e apaSpi1.KB929668              5961501 297 -  12308914 T
e cheMyd1.KB478633              2433836 723 +   6037886 T
e chrPic2.chr2                 18523590 544 -  68452538 T
e pelSin1.JH211373              2650239   0 -   4257854 I
e melUnd1.JH556589              7680049 6397 -   7952740 T
e taeGut2.chr3                 13879677  44 - 112617285 I
e rheMac3.chr8                 61693383 6467 + 150158102 T
e macFas5.chr8                 58367217 6565 + 146850525 T
e chlSab2.chr8                 53287758 6649 + 139301422 T
e panTro4.chr8                 55025844 24898 + 143986469 T

a score=200311.000000
s hg38.chr8_KI270814v1_alt        79598 38 +    141812 gacaataacgagg--------------------ttata-aaacatcatcagtgaaaggt
s ponAbe2.chr8                 59049173 38 + 153482349 gaCAATAACGAGG--------------------TCATA-AAGCATCATCAGAGAAAGGT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                48122776 38 + 100215132 GACAATAACGGGG--------------------TTATA-AAGCATCATCAGAGATAGGT
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                99335424 38 + 108792865 GAAAATAATCAGG--------------------TTATA-AAGCATCAGGAGAGAAAGAC
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126             24001839 38 +  27210278 gaaaataatcagg--------------------ttata-aagcATCAGGAGAGAAAGac
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541             21181267 33 -  23169006 GCAAATGA--------------------------TATATAAGCCTCAGCAGAGAATGAT
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437             19206651 37 -  22931326 -aaaatgatcagg--------------------ctacg-agacagcagcagcaggtgac
i vicPac2.KB632437             C 0 I 1
s camFer1.KB017763              2800778 37 -   6207710 -aaaatgatcagg--------------------ctacg-aagcAGCAGCAGCAGGTGAC
i camFer1.KB017763             C 0 I 1
s orcOrc1.KB316907             10836269 38 +  17242564 gaaaataatcagg--------------------ttaca-aagcagcagtggagaatgat
i orcOrc1.KB316907             C 0 I 1
s equCab2.chr15                84029967 38 +  91571448 gaaaataatcagg--------------------ttaca-aagcaccagtagagaacaat
i equCab2.chr15                C 0 I 1
s cerSim1.JH767782              6803063 38 -  14545593 gaaaataatcggg--------------------ttaca-aagcatcagtagagaatgat
i cerSim1.JH767782             C 0 I 1
s canFam3.chr17                57833877 38 -  64289059 caaaataatcagg--------------------ttaca-aagcaccagtagagaatgat
i canFam3.chr17                C 0 I 1
s musFur1.GL896914             13605769 38 -  19722643 CAAAATAATCAGG--------------------TTACA-AAGCACCAGTAGAGAACAAT
i musFur1.GL896914             C 0 I 1
s odoRosDiv1.KB229025           3027827 38 +   4816872 caaaacaatcagg--------------------ttaca-aagcaccagtagagaacgat
i odoRosDiv1.KB229025          C 0 I 1
s pteAle1.KB030580             19407238 37 -  23789964 caaagt-accagg--------------------ttacg-gagcatcagcagagaaggcc
i pteAle1.KB030580             C 0 I 1
s triMan1.JH594629              9960250 38 +  24341844 GACAACAATCAAG--------------------TTACA-AAACATCAGCAGAGAATGAG
i triMan1.JH594629             I 188 C 0
s dasNov3.JH567436              1026263 38 -   2788317 aaaaataataaac--------------------ttaaa-aaacaacagtagagaacaat
i dasNov3.JH567436             I 1 C 0
s sarHar1.chr5_GL861934_random    58116 56 -    124633 aaaagcaataaagATTTTAATAgctaaatatctttaaa-attatttagttgGGGGTT--
i sarHar1.chr5_GL861934_random C 0 C 0
s xenTro7.KB021650             80766606 25 + 150913983 ---GATAATTGGGGTATTTG-------------TTATG-AAG-----------------
i xenTro7.KB021650             C 0 C 0
e ornAna1.Ultra479              3871811 7152 -   6008416 T
e tetNig2.chr13                 4300044 851 -  13302670 T
e punNye1.JH419232              4767720 338 +   5065651 T
e mayZeb1.JH720588              2493684 338 +   2778784 T
e hapBur1.JH425411              1657068 338 +   1983257 T
e neoBri1.JH422276              4185134 338 -  16571924 T
e araMac1.AOUJ01470298              637  0 -       895 I
e takFla1.KE120500               511214 428 +    663757 T
e fr3.chr9                      3741472 428 -  13922460 T
e ficAlb2.chr1A                24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195          44258 5209 +     59083 T
e pseHum1.KB221193              9789407 578 +  32995986 T
e zonAlb1.KB913045             12582000 6532 +  16390125 T
e colLiv1.KB375358              1019718 687 +   1462937 T
e allMis1.JH737798                80260 1661 +    106177 T
e falPer1.KB391107              2216004 600 -   3101084 T
e falChe1.KB398074              4263387 600 -   7151304 T
e macEug2.GL059506                 6470  0 +     21939 I
e galGal4.chr1                 24067632 542 + 195276750 T
e geoFor1.JH739914              5157724 543 -   7168866 T
e melGal1.chr1                 24929349 4997 + 204065131 T
e anaPla1.KB742960               141378  0 +    531124 I
e amaVit1.KB277496                 7625 3737 -     10329 T
e apaSpi1.KB929668              5961501 297 -  12308914 T
e cheMyd1.KB478633              2433836 723 +   6037886 T
e chrPic2.chr2                 18523590 544 -  68452538 T
e pelSin1.JH211373              2650239  0 -   4257854 I
e melUnd1.JH556589              7680049 6397 -   7952740 T
e taeGut2.chr3                 13879677 44 - 112617285 I
e loxAfr3.scaffold_20          27612763 205 -  46401353 I
e rheMac3.chr8                 61693383 6467 + 150158102 T
e macFas5.chr8                 58367217 6565 + 146850525 T
e chlSab2.chr8                 53287758 6649 + 139301422 T
e panTro4.chr8                 55025844 24898 + 143986469 T

a score=308686.000000
s hg38.chr8_KI270814v1_alt        79636 81 +    141812 ctatttgtacaa-----------attaat-------tttttgagtgt------------------atacttaggg--tatataaaatg-------tatttggttaa--tgtcaaaataattatctttg
s ponAbe2.chr8                 59049211 81 + 153482349 CTATTTGTATAA-----------ATTAAT-------TTTTTGAGTGT------------------ATACATGGGG--TATATAAAATG-------TATTTGGTTAA--TGTCAAAATAATTATCTTCG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                48122814 81 + 100215132 CTATTTGTACAA-----------ATTAAT-------TTTTTGAGTGT------------------ATACATGGGG--TATATAAAATG-------TATTTGGTTCA--TGTCAAAATAATGATCTTCG
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                99335462 79 + 108792865 CTACTTATAC---------------TTTC-------ATTTTTAATGT------------------ATACATAGGG-ACATATAAAAGA-------TGTTTAGTTAA-GTATCAAAGTGCTCACCTTTG
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126             24001877 79 +  27210278 ctacttatac---------------tttt-------ttttttaatgt------------------gtacataggg-acatataaaaga-------tgtttagctaa-atgtcaaagtgctcatctttg
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541             21181300 79 -  23169006 CTAGTCACACAA-----------ATTATT-------TCTATAAGTAT------------------ATACACAGGA-ATATATGAAAGA-------TAATTA---AA--TGTCAAAGTGGTTATCTTTT
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437             19206689 81 -  22931326 ctggttctac-a-----------actgtt-------tttgtttatgc------------------agac-taggg-acacctgaaaga-------cgctgaactat-agggcaaagcggtcatctttc
i vicPac2.KB632437             I 1 C 0
s camFer1.KB017763              2800816 81 -   6207710 CTGTTTCTAC-A-----------ACTGTT-------TTTGTGTATGC------------------AGAC-TAGGG-ACACCTGAAAGA-------CGCTGAACTAG-AGGGCAAAGCGGTCATCTTTC
i camFer1.KB017763             I 1 C 0
s orcOrc1.KB316907             10836308 82 +  17242564 ctgtttatacaa-----------attgtc-------tgtatgtacgt------------------ataa-caggg-atatctgaaaga-------tgtttagctaa-atgtcaaagcggtaatctttt
i orcOrc1.KB316907             I 1 C 0
s equCab2.chr15                84030006 82 +  91571448 ctatttatat-a-----------attatt-------tttataaatgt------------------atacataggg-atatatgaaaga-------tgtttagttag-atgtgaaagtggttatctttt
i equCab2.chr15                I 1 C 0
s cerSim1.JH767782              6803102 83 -  14545593 ctgtttatataa-----------attatt-------tttatgaaggt------------------atacataggg-gtatatgaaaga-------tggttagctaa-atgtcaaagtggttatctttt
i cerSim1.JH767782             I 1 C 0
s canFam3.chr17                57833916 89 -  64289059 cTGTTTATACAA-----------ATTATT-------TTtatgtacacagatatatatatatatatatatatatat-atatatGAAAG--------------------ATGTCAAAGTGCTTATCTTCT
i canFam3.chr17                I 1 C 0
s musFur1.GL896914             13605808 69 -  19722643 CTATTTATACAA-----------ATTATT-------TTTATGAAGGT--------------------ACAGAGGA-ATATATGAAAG--------------------ATGTCAAAGCGCTTATCTTCT
i musFur1.GL896914             I 1 C 0
s odoRosDiv1.KB229025           3027866 71 +   4816872 ctgtttatacaa-----------attatt-------tttatgaaggt------------------acacagaggg-atatatgaaag--------------------atgttaaactacttatcttct
i odoRosDiv1.KB229025          I 1 C 0
s pteAle1.KB030580             19407276 83 -  23789964 ctgtttacacaa-----------atcatg-------ttgatgaatgt------------------acacgcaggg-atatgtgaaaaa-------tgtctagctta-atgtcaaagtgattatctttt
i pteAle1.KB030580             I 1 C 0
s loxAfr3.scaffold_20          27612968 83 -  46401353 ctttttatgcaa-----------attatt-------tttatgtatgc------------------atgtacttgg-acgtataaaaga-------tggtcggctac-aagtcaaagtggttatctttt
i loxAfr3.scaffold_20          I 205 C 0
s triMan1.JH594629              9960288 83 +  24341844 CCTCTTATGCAA-----------ATTATT-------TTTATGTATGT------------------ATGTACTGGG-ATATATAAAACA-------CGTTCAGCTAC-ATGTCAAAGTGGTTACTTTAT
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436              1026301 88 -   2788317 ctgtttatacaa-----------aCTATT-------TTTATGTATGT------------------ATGCATTGGGAACATACAAAAAAAGT---TTGTTCAGCTTA-ACATCAGAGTGTTTCTATTTT
i dasNov3.JH567436             C 0 C 0
s sarHar1.chr5_GL861934_random    58172 97 -    124633 TTATATACACAATGTCCAAGTATCTTGAT-------TTTAAGGATAT------------------ATA-ATCAAG-ACATTTCACATAGACCCATTATTTCATTGGTATGT----GTACTCACTTCTG
i sarHar1.chr5_GL861934_random C 0 C 0
s xenTro7.KB021650             80766631 88 + 150913983 CAATTTGAACAC-----------ATTACTGGGGTGATTTTTGGCTA-------------------ATTCTTCCAG-GTATATTTACTC-------CATGTTGTTCA--GGTTAGTTAAATGATGCCTG
i xenTro7.KB021650             C 0 N 0
e ornAna1.Ultra479              3871811 7152 -   6008416 T
e tetNig2.chr13                 4300044 851 -  13302670 T
e punNye1.JH419232              4767720 338 +   5065651 T
e mayZeb1.JH720588              2493684 338 +   2778784 T
e hapBur1.JH425411              1657068 338 +   1983257 T
e neoBri1.JH422276              4185134 338 -  16571924 T
e araMac1.AOUJ01470298              637  0 -       895 I
e takFla1.KE120500               511214 428 +    663757 T
e fr3.chr9                      3741472 428 -  13922460 T
e ficAlb2.chr1A                24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195          44258 5209 +     59083 T
e pseHum1.KB221193              9789407 578 +  32995986 T
e zonAlb1.KB913045             12582000 6532 +  16390125 T
e colLiv1.KB375358              1019718 687 +   1462937 T
e allMis1.JH737798                80260 1661 +    106177 T
e falPer1.KB391107              2216004 600 -   3101084 T
e falChe1.KB398074              4263387 600 -   7151304 T
e macEug2.GL059506                 6470  0 +     21939 I
e galGal4.chr1                 24067632 542 + 195276750 T
e geoFor1.JH739914              5157724 543 -   7168866 T
e melGal1.chr1                 24929349 4997 + 204065131 T
e anaPla1.KB742960               141378  0 +    531124 I
e amaVit1.KB277496                 7625 3737 -     10329 T
e apaSpi1.KB929668              5961501 297 -  12308914 T
e cheMyd1.KB478633              2433836 723 +   6037886 T
e chrPic2.chr2                 18523590 544 -  68452538 T
e pelSin1.JH211373              2650239  0 -   4257854 I
e melUnd1.JH556589              7680049 6397 -   7952740 T
e taeGut2.chr3                 13879677 44 - 112617285 I
e rheMac3.chr8                 61693383 6467 + 150158102 T
e macFas5.chr8                 58367217 6565 + 146850525 T
e chlSab2.chr8                 53287758 6649 + 139301422 T
e panTro4.chr8                 55025844 24898 + 143986469 T

a score=60020.000000
s hg38.chr8_KI270814v1_alt        79717 14 +    141812 ------------cttaagt-------aaaattt----
s ponAbe2.chr8                 59049292 14 + 153482349 ------------CTTAAGT-------AAAATTT----
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                48122895 14 + 100215132 ------------CTTAAGT-------AAAATTT----
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                99335541 21 + 108792865 ------------GGTAAGTAAAAAAAAAAAATA----
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126             24001956 19 +  27210278 ------------ggtaggt--aaaaaaaaatta----
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541             21181379 14 -  23169006 ------------ATTAAGT-------AAAATTT----
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437             19206770 14 -  22931326 ------------agtaagt-------ataattt----
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763              2800897 14 -   6207710 ------------AGTAAGT-------ACAATTT----
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907             10836390 14 +  17242564 ------------ggtaagt-------aaaatct----
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                84030088 14 +  91571448 ------------ggtaagt-------aaaattt----
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782              6803185  8 -  14545593 ------------g-------------aaaattt----
i cerSim1.JH767782             C 0 C 0
s canFam3.chr17                57834005 14 -  64289059 ------------GGTGAGT-------AAAATCT----
i canFam3.chr17                C 0 C 0
s musFur1.GL896914             13605877 14 -  19722643 ------------GGTGAGT-------AAAATTT----
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025           3027937 14 +   4816872 ------------ggtgagt-------aaaattt----
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580             19407359 13 -  23789964 ------------ag-aagt-------aaaattt----
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20          27613051 14 -  46401353 ------------ggtaagt-------aaaagtt----
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629              9960371 14 +  24341844 ------------CGTAAGT-------AAAAGTT----
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436              1026389 13 -   2788317 ------------GCTAAGT--------AAATCT----
i dasNov3.JH567436             C 0 C 0
s sarHar1.chr5_GL861934_random    58269 14 -    124633 ------------GTTTGGT-------ACATTTG----
i sarHar1.chr5_GL861934_random C 0 I 4
s xenTro7.KB021651             15706103 30 + 117219152 catccaaaaaggattaatt-------atatcttagct
i xenTro7.KB021651             N 0 C 0
e ornAna1.Ultra479              3871811 7152 -   6008416 T
e tetNig2.chr13                 4300044 851 -  13302670 T
e punNye1.JH419232              4767720 338 +   5065651 T
e mayZeb1.JH720588              2493684 338 +   2778784 T
e hapBur1.JH425411              1657068 338 +   1983257 T
e neoBri1.JH422276              4185134 338 -  16571924 T
e araMac1.AOUJ01470298              637  0 -       895 I
e takFla1.KE120500               511214 428 +    663757 T
e fr3.chr9                      3741472 428 -  13922460 T
e ficAlb2.chr1A                24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195          44258 5209 +     59083 T
e pseHum1.KB221193              9789407 578 +  32995986 T
e zonAlb1.KB913045             12582000 6532 +  16390125 T
e colLiv1.KB375358              1019718 687 +   1462937 T
e allMis1.JH737798                80260 1661 +    106177 T
e falPer1.KB391107              2216004 600 -   3101084 T
e falChe1.KB398074              4263387 600 -   7151304 T
e macEug2.GL059506                 6470  0 +     21939 I
e galGal4.chr1                 24067632 542 + 195276750 T
e geoFor1.JH739914              5157724 543 -   7168866 T
e melGal1.chr1                 24929349 4997 + 204065131 T
e anaPla1.KB742960               141378  0 +    531124 I
e amaVit1.KB277496                 7625 3737 -     10329 T
e apaSpi1.KB929668              5961501 297 -  12308914 T
e cheMyd1.KB478633              2433836 723 +   6037886 T
e chrPic2.chr2                 18523590 544 -  68452538 T
e pelSin1.JH211373              2650239  0 -   4257854 I
e melUnd1.JH556589              7680049 6397 -   7952740 T
e taeGut2.chr3                 13879677 44 - 112617285 I
e rheMac3.chr8                 61693383 6467 + 150158102 T
e macFas5.chr8                 58367217 6565 + 146850525 T
e chlSab2.chr8                 53287758 6649 + 139301422 T
e panTro4.chr8                 55025844 24898 + 143986469 T

a score=-95199.000000
s hg38.chr8_KI270814v1_alt         79731 63 +    141812 gggggca--atttaaa-----------------tttt-------------------------------ttaatatattttcttatattg------------accagttttctt----aaaaagta-------gata
s ponAbe2.chr8                  59049306 63 + 153482349 GGGGGCa--atttaaa-----------------tttt-------------------------------ttaatatattttcttatattG------------ACCAGTTTTCTT----AAAAAGTA-------GATA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48122909 63 + 100215132 GGGGCCA--ATTTAAA-----------------TTTT-------------------------------TTAATATATTTTCTTATATTG------------ACCAGTTTTCTT----AAAAAGTA-------GATA
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99335562 67 + 108792865 GAGAGCA--TTTAAAAAT-------------TCCTTT-------------------------------TATATATATTTTCTTATATTA------------ACCAATTTTCTT----AAAAAGTA-------TATA
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24001975 67 +  27210278 gggggca--ttttaaaat-------------tcctta-------------------------------tacatatattttcttatatta------------accaattttctt----aaaaagta-------tata
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21181393 73 -  23169006 GGGGCAA--TTTTTAATTCTCTGTCTCTCTCTCTCTA-------------------------------TATATATATTTTCTTCTATTA------------ACTAATTTTCCT----AAAAA--------------
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19206784 89 -  22931326 ggggtga--cttttaa-----------------tgtcttttATATGTAAGcacatacatacacacatgcacacacacacaTATATACTG------------ACCAATTTTTT-------AAAGCA-------CA--
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2800911 89 -   6207710 GGGGTGA--CTTTTAA-----------------TGTCTTTTATATGTAAGCacatacatacatacatgcacacacacacatatatacTG------------ACCAATTTTTT-------AAAGCT-------CA--
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10836404 81 +  17242564 gtggtga--tttttga-----------------tttcttttatatatatacacatatatacat--------acacacacatatataCTG------------GCCAATTTTTT-------AAAGCA-------CT--
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84030102 84 +  91571448 ggcgtta--ttttaaa-----------------tttt-ttAATATAT---TAAATATTGACC-atatatatatatatatatatatataC------------ACCAATTTTTT-------AAAGTA-------CA--
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6803193 78 -  14545593 ggggtga--tttaaaa-----------------tttt-tttATAGAT---TAAATGTTGACC-------ATATATATATATATGTACAC------------ACCAATTTTTT-------AAAGTA-------CA--
i cerSim1.JH767782             C 0 C 0
s canFam3.chr17                 57834019 49 -  64289059 GGGGTGA--TTTTTAA-----------------TTTC----------------------------------------ATATATATATAG------------ACTAATTTTTT-------AAAGTG-------TG--
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13605891 47 -  19722643 GGGGTGA--TTTTTAA-----------------CTTC------------------------------------------ACATATATAG------------ACTAAATTTTA-------AAAGAG-------CC--
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3027951 47 +   4816872 ggggtga--tttttaa-----------------tttc------------------------------------------ATATATAGAG------------ACTAATTTTTA-------AAAGAG-------TA--
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19407372 54 -  23789964 gaagtga--ttttaat-----------------ttct-----------------------------------tatatatatttatgttg------------accaatttcta-------aaagta-------ta--
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27613065 66 -  46401353 ggggtga--ttttaaa-----------------tttc------------------------------ttttttatattgtttgacactg------------accaattttcttaaacaaaaagta-------ta--
i loxAfr3.scaffold_20          C 0 I 4
s triMan1.JH594629               9960385 66 +  24341844 GGGGTGA--TTTTAAA-----------------TTTC------------------------------TTTTTTATATTGTTTGACATTG------------ACCAATTTTCTGGAACAAAAATTA-------TA--
i triMan1.JH594629             C 0 I 7
s dasNov3.JH567436               1026402 75 -   2788317 GGAGTGATTTTTTAAA-----------------TTTC------------------------------CTTTTTATATTTTTTAGTATTG------------ACCAATTTTCTTAAACAAAAAGTACTTCTTTTA--
i dasNov3.JH567436             C 0 I 4
s monDom5.chr8                 174690171 47 + 312544902 GCTCTTA--TTTCACA-----------------TTTT-------------------------------CTAAGAATTT-TCTTAGCCTAAA----------ATAAATT----------------------------
i monDom5.chr8                 N 0 C 0
s sarHar1.chr5_GL861934_random     58287 58 -    124633 TTTGTTA--TTGTCTG-----------------TTGC-------------------------------CAAACATTTTGTCACAGGCTAAACTTTGAACAgacacatt----------------------------
i sarHar1.chr5_GL861934_random I 4 C 0
s xenTro7.KB021651              15706133 66 + 117219152 gggatca--attacaa-----------------ggtt-------------------------------ctgttttatttctacatagaaaaaggaa-----atcagttttaaaattctgaa---------------
i xenTro7.KB021651             C 0 C 0
e ornAna1.Ultra479               3871811 7152 -   6008416 T
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chr1A                 24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195           44258 5209 +     59083 T
e pseHum1.KB221193               9789407 578 +  32995986 T
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375358               1019718 687 +   1462937 T
e allMis1.JH737798                 80260 1661 +    106177 T
e falPer1.KB391107               2216004 600 -   3101084 T
e falChe1.KB398074               4263387 600 -   7151304 T
e macEug2.GL059506                  6470  0 +     21939 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr1                  24929349 4997 + 204065131 T
e anaPla1.KB742960                141378  0 +    531124 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB478633               2433836 723 +   6037886 T
e chrPic2.chr2                  18523590 544 -  68452538 T
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr3                  13879677 44 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=95380.000000
s hg38.chr8_KI270814v1_alt         79794 22 +    141812 ct---atttttataatc-aTACAACA----
s ponAbe2.chr8                  59049369 22 + 153482349 CT---ATTTTTATAATC-ATAAAACA----
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48122972 22 + 100215132 CT---ATTTTTATAATC-ATAAAACA----
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99335629 15 + 108792865 CT---ATTTTTATAAT--------CA----
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24002042 15 +  27210278 ct---atttttacaaT--------CA----
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19206873 21 -  22931326 -T---ATTTTTATAATC-ATAAAAAA----
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2801000 21 -   6207710 -T---ATTTTTATAATC-ATAAAAAA----
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10836485 21 +  17242564 -T---ATTTTTATAATC-ATAAAAAA----
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84030186 21 +  91571448 -T---ATTTTTATAACC-ATAAATAA----
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6803271 21 -  14545593 -T---ATTTTTATAATC-ATAAATAA----
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134100912 22 + 140925898 CT---ATTTTTATAATC-AAAGAAAA----
i felCat8.chrA3                N 0 C 0
s canFam3.chr17                 57834068 21 -  64289059 -G---ATTTTTATAATC-ACAGAAAA----
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13605938 21 -  19722643 -T---ATTTTTATAATC-ACAGAAAA----
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3027998 21 +   4816872 -T---ATTTTTATAATC-ACAGAAAA----
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19407426 22 -  23789964 tt---atttttataata-agaggaaT----
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27613135 23 -  46401353 tc---atttttataatcattaaaaaa----
i loxAfr3.scaffold_20          I 4 C 0
s triMan1.JH594629               9960458 22 +  24341844 TC---ATTTTTATAATC-TTTAAAAA----
i triMan1.JH594629             I 7 C 0
s dasNov3.JH567436               1026481 11 -   2788317 TC---ATTT---------TTTAA-------
i dasNov3.JH567436             I 4 C 0
s monDom5.chr8                 174690218 25 + 312544902 TCCAAGTGTTTGTGACT-AAGTGACA----
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861934_random     58345 22 -    124633 tc---atttttctagtg-TGATAGCA----
i sarHar1.chr5_GL861934_random C 0 N 0
s xenTro7.KB021651              15706199 22 + 117219152 -------ttatttgatt-aaaatggagtct
i xenTro7.KB021651             C 0 C 0
e ornAna1.Ultra479               3871811 7152 -   6008416 T
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chr1A                 24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195           44258 5209 +     59083 T
e pseHum1.KB221193               9789407 578 +  32995986 T
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375358               1019718 687 +   1462937 T
e allMis1.JH737798                 80260 1661 +    106177 T
e falPer1.KB391107               2216004 600 -   3101084 T
e falChe1.KB398074               4263387 600 -   7151304 T
e macEug2.GL059506                  6470  0 +     21939 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr1                  24929349 4997 + 204065131 T
e anaPla1.KB742960                141378  0 +    531124 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB478633               2433836 723 +   6037886 T
e chrPic2.chr2                  18523590 544 -  68452538 T
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr3                  13879677 44 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21181466  0 -  23169006 C
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=562980.000000
s hg38.chr8_KI270814v1_alt     79816  90 +    141812 GCAAGAGAGGAGCTCTCATACCTTCTCCATTC-------TTCTGTATTACCTATTA-----CA-----TAGTGAATTTTTTTCTAAAATTAATACTGAATAAAAGTT
s ponAbe2.chr8              59049391  92 + 153482349 GCAAGAGAGGAGCTCTCATATCTTCTCCATTC-------TTCTGTATTCCCTATTA-----CACA---TAGTGAATTTTTTTCTAAAATTAATACTGAATAAAAGTT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48122994  92 + 100215132 GCAAGAGAGGAGCTTTCATACCTTCTCCATTC-------TTCTGTATTACCTATTT-----CACA---TAGTGAATTTTTTTCTAAAATTAATACTGGATAAAAGTT
i nomLeu3.chr16            C 0 C 0
s calJac3.chr14             99335644  94 + 108792865 GTAACAGAGGATCTCTCAAACCTTCTCCACTCACAGAGGATCTGTATTAGCTATTT-----GACA---TACTGAATTTCTTT-----ATTAATTTTGAAGGAAAGGC
i calJac3.chr14            C 0 C 0
s saiBol1.JH378126          24002057  94 +  27210278 GTAACAGAggatctctcatacctcctccatgcacagagggtctgtgttagctattt-----gaca---tactgaatttcttt-----attaattttgaagaaaaggc
i saiBol1.JH378126         C 0 C 0
s otoGar3.GL873541          21181466  81 -  23169006 -------------TCTCACACCTACTTGATGTAA-----GTCTGTATTGCCTATTT-----GACA---CACCAAATTTCTTTATAAAGTTCTCTTTGAAGAAAAGGT
i otoGar3.GL873541         C 0 C 0
s vicPac2.KB632437          19206894  98 -  22931326 GCAAGAGCAggtctctcataccttctcgattcacaaaagctctgtatta-ctattt-----ggca---taccgaagttctctgcaaaattccttttgaagaagaagt
i vicPac2.KB632437         C 0 C 0
s camFer1.KB017763           2801021  98 -   6207710 GCAAGAGCAGGTCTCTCATACCTTCTTGATTCACAAAAGTTCTGTATTA-CTATTT-----GGCA---TACCGAAGTTCTTTGTAAAATTCCTTCTGAAGAGTAAGT
i camFer1.KB017763         C 0 C 0
s orcOrc1.KB316907          10836506  95 +  17242564 GCGAGAGCGGATCTCTCATACGTTCTCAATTCACGGAAGCTCTGTATTATCTATCT-----GGCA---TACTG----TCTTTATAAGATTCATTTTGAAGAAAAAGT
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15             84030207  99 +  91571448 GCAAGACAggctctctcataccttctctatccacagaagctctgtattacctactt-----ggca---tactgaacttctttataaaattcattttgaagaaaaagt
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782           6803292  98 -  14545593 GCAAGATAGGATACCTCATA-CTTCTCTATTCACAGAAGTTCCGTATGACTTATTT-----GGCA---CACTGAATTTCTTTATAGAAATCATTTTGAAGAAAAAGT
i cerSim1.JH767782         C 0 C 0
s felCat8.chrA3            134100934 101 + 140925898 ACAAGACGGGATCTCTCCTACATTTTCCATTCATGCGTGCTCTACATCACCTATTTAT---GGCA---CACTGAATTTCTCTATAAAATTCATTTTGAAAAAAAGTT
i felCat8.chrA3            C 0 I 262
s canFam3.chr17             57834089 104 -  64289059 ACAAGAGAGGATCTCTTATACATTCTCCATACACAGATGTTCTATATTACCTACTTATTATGGCA---CACTGAATTTCTCTACAAAATTCATTTTGAAGAAAAAGT
i canFam3.chr17            C 0 C 0
s musFur1.GL896914          13605959  92 -  19722643 ACA--ACATGATCTCTCATACATTCCCCACGCCCAGATGCTCTGTCCTACCTATTTATTAGGGCA---CACTAAATTTCTCTAAAAAACTAGTTTTG----------
i musFur1.GL896914         C 0 C 0
s odoRosDiv1.KB229025        3028019 102 +   4816872 ACA--ACAGGATCTCTCATACATTCTCCACACACAGATGCTCTATATTACCTATTTATTACAGCA---CACTGAATTTCTCTACAAAATTCGTTTTGAAGAAAAAGT
i odoRosDiv1.KB229025      C 0 C 0
s pteAle1.KB030580          19407448  90 -  23789964 GCAAGACGGGATCTCTCATACCTTCTCCATTCACAGAAGC---------CCTATTT-----GGAA---CACTGCATTTCTTTGTAAAATTCATTCTGAAGAAAAAGT
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20       27613158  93 -  46401353 GCAAGATAGGATCCCTCACATCTTTTTCACTCACAGAACTTCTGTATTACCTCTTT-----AACA---CACTCCATTTC-TTTTTACATTTATCTTG-----AAGGT
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629           9960480  98 +  24341844 GTAAGATAggatttctcacaccttcttcactcacagaagatctgtattacctatgt-----aaca---tacccaatttc-tttttacattcattttgaagaaaaggt
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436           1026492  94 -   2788317 --AAGGTAGGATCTTTCAGACTGTTTTAATTCACAGAAGCTCTGCATTACCTTTTC-----AACA---CACCGAATT---TTATAAAATTTTTCTTGAAGAAAAGGT
i dasNov3.JH567436         C 0 C 0
s monDom5.chr8             174690243  61 + 312544902 AGAAAATAGGAGAGATATTACGTTT------------AATTTTTTTTTCTTTATTT-----AGTAATGTACTTGAGTT-----------------------------
i monDom5.chr8             C 0 I 1
s xenTro7.KB021651          15706221  61 + 117219152 atgggagacgggctttc-------cgtaattcagag--------------ctttct-----gg-a---taatgggtttc----------------cggataaggggt
i xenTro7.KB021651         C 0 C 0
e ornAna1.Ultra479           3871811 7152 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637   0 -       895 I
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195       44258 5209 +     59083 T
e pseHum1.KB221193           9789407 578 +  32995986 T
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375358           1019718 687 +   1462937 T
e allMis1.JH737798             80260 1661 +    106177 T
e falPer1.KB391107           2216004 600 -   3101084 T
e falChe1.KB398074           4263387 600 -   7151304 T
e macEug2.GL059506              6470   0 +     21939 I
e galGal4.chr1              24067632 542 + 195276750 T
e geoFor1.JH739914           5157724 543 -   7168866 T
e melGal1.chr1              24929349 4997 + 204065131 T
e anaPla1.KB742960            141378   0 +    531124 I
e amaVit1.KB277496              7625 3737 -     10329 T
e apaSpi1.KB929668           5961501 297 -  12308914 T
e cheMyd1.KB478633           2433836 723 +   6037886 T
e chrPic2.chr2              18523590 544 -  68452538 T
e pelSin1.JH211373           2650239   0 -   4257854 I
e melUnd1.JH556589           7680049 6397 -   7952740 T
e taeGut2.chr3              13879677  44 - 112617285 I
e rheMac3.chr8              61693383 6467 + 150158102 T
e macFas5.chr8              58367217 6565 + 146850525 T
e chlSab2.chr8              53287758 6649 + 139301422 T
e panTro4.chr8              55025844 24898 + 143986469 T

a score=47963.000000
s hg38.chr8_KI270814v1_alt     79906 5 +    141812 TCCAC
s ponAbe2.chr8              59049483 5 + 153482349 TCCAC
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48123086 5 + 100215132 TCCAC
i nomLeu3.chr16            C 0 C 0
s calJac3.chr14             99335738 5 + 108792865 TCCAC
i calJac3.chr14            C 0 C 0
s saiBol1.JH378126          24002151 5 +  27210278 tccac
i saiBol1.JH378126         C 0 C 0
s otoGar3.GL873541          21181547 5 -  23169006 TCCAC
i otoGar3.GL873541         C 0 C 0
s vicPac2.KB632437          19206992 5 -  22931326 cccac
i vicPac2.KB632437         C 0 C 0
s camFer1.KB017763           2801119 5 -   6207710 CCCAC
i camFer1.KB017763         C 0 C 0
s orcOrc1.KB316907          10836601 5 +  17242564 TCCAC
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15             84030306 5 +  91571448 tccac
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782           6803390 5 -  14545593 TCCAC
i cerSim1.JH767782         C 0 C 0
s canFam3.chr17             57834193 5 -  64289059 TCAGC
i canFam3.chr17            C 0 C 0
s odoRosDiv1.KB229025        3028121 5 +   4816872 TCCAC
i odoRosDiv1.KB229025      C 0 C 0
s pteAle1.KB030580          19407538 5 -  23789964 TCCAC
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20       27613251 5 -  46401353 TCCAC
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629           9960578 5 +  24341844 tccac
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436           1026586 5 -   2788317 CTCAC
i dasNov3.JH567436         C 0 C 0
s monDom5.chr8             174690305 4 + 312544902 CCTA-
i monDom5.chr8             I 1 C 0
s xenTro7.KB021651          15706282 5 + 117219152 ccgat
i xenTro7.KB021651         C 0 C 0
e musFur1.GL896914          13606051 0 -  19722643 C
e felCat8.chrA3            134101035 262 + 140925898 I
e ornAna1.Ultra479           3871811 7152 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637 0 -       895 I
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195       44258 5209 +     59083 T
e pseHum1.KB221193           9789407 578 +  32995986 T
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375358           1019718 687 +   1462937 T
e allMis1.JH737798             80260 1661 +    106177 T
e falPer1.KB391107           2216004 600 -   3101084 T
e falChe1.KB398074           4263387 600 -   7151304 T
e macEug2.GL059506              6470 0 +     21939 I
e galGal4.chr1              24067632 542 + 195276750 T
e geoFor1.JH739914           5157724 543 -   7168866 T
e melGal1.chr1              24929349 4997 + 204065131 T
e anaPla1.KB742960            141378 0 +    531124 I
e amaVit1.KB277496              7625 3737 -     10329 T
e apaSpi1.KB929668           5961501 297 -  12308914 T
e cheMyd1.KB478633           2433836 723 +   6037886 T
e chrPic2.chr2              18523590 544 -  68452538 T
e pelSin1.JH211373           2650239 0 -   4257854 I
e melUnd1.JH556589           7680049 6397 -   7952740 T
e taeGut2.chr3              13879677 44 - 112617285 I
e rheMac3.chr8              61693383 6467 + 150158102 T
e macFas5.chr8              58367217 6565 + 146850525 T
e chlSab2.chr8              53287758 6649 + 139301422 T
e panTro4.chr8              55025844 24898 + 143986469 T

a score=192827.000000
s hg38.chr8_KI270814v1_alt     79911 14 +    141812 AGCTTT-------AAAATAAA
s ponAbe2.chr8              59049488 14 + 153482349 AGCTTT-------AAAATAAA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48123091 14 + 100215132 AGCTTT-------AAAATAAA
i nomLeu3.chr16            C 0 C 0
s calJac3.chr14             99335743 14 + 108792865 AGCTTT-------AAAATAAA
i calJac3.chr14            C 0 C 0
s saiBol1.JH378126          24002156 14 +  27210278 agcttt-------aaaataaa
i saiBol1.JH378126         C 0 C 0
s otoGar3.GL873541          21181552 14 -  23169006 ATCTTT-------TAAATAAA
i otoGar3.GL873541         C 0 C 0
s vicPac2.KB632437          19206997 14 -  22931326 agcttt-------aaaataaa
i vicPac2.KB632437         C 0 C 0
s camFer1.KB017763           2801124 14 -   6207710 AGCTTT-------AAAATAAA
i camFer1.KB017763         C 0 C 0
s orcOrc1.KB316907          10836606 14 +  17242564 AGCTTT-------AAAACAAA
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15             84030311 14 +  91571448 agcttt-------aaaataaa
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782           6803395 14 -  14545593 AGCTTT-------AAAATAAG
i cerSim1.JH767782         C 0 C 0
s felCat8.chrA3            134101297 14 + 140925898 AGCTTT-------AAAATAAA
i felCat8.chrA3            I 262 C 0
s canFam3.chr17             57834198 14 -  64289059 AGCTTT-------AAAATAAA
i canFam3.chr17            C 0 I 217
s musFur1.GL896914          13606051 13 -  19722643 -CATTT-------AAAATAAA
i musFur1.GL896914         C 0 C 0
s odoRosDiv1.KB229025        3028126 13 +   4816872 -AATTT-------AAAATAAA
i odoRosDiv1.KB229025      C 0 C 0
s pteAle1.KB030580          19407543 14 -  23789964 AGCTTT-------AAAATAAA
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20       27613256 14 -  46401353 AGCTTT-------AAAATAAA
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629           9960583 14 +  24341844 agcttt-------aaaataaa
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436           1026591 14 -   2788317 AGTTTT-------AAAATAAA
i dasNov3.JH567436         C 0 C 0
s monDom5.chr8             174690309 21 + 312544902 AGCTTTTTTTGTGAAGATTAA
i monDom5.chr8             C 0 I 2
s xenTro7.KB021651          15706287 14 + 117219152 acctgT-------ACTGCCAA
i xenTro7.KB021651         C 0 C 0
e ornAna1.Ultra479           3871811 7152 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637  0 -       895 I
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195       44258 5209 +     59083 T
e pseHum1.KB221193           9789407 578 +  32995986 T
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375358           1019718 687 +   1462937 T
e allMis1.JH737798             80260 1661 +    106177 T
e falPer1.KB391107           2216004 600 -   3101084 T
e falChe1.KB398074           4263387 600 -   7151304 T
e macEug2.GL059506              6470  0 +     21939 I
e galGal4.chr1              24067632 542 + 195276750 T
e geoFor1.JH739914           5157724 543 -   7168866 T
e melGal1.chr1              24929349 4997 + 204065131 T
e anaPla1.KB742960            141378  0 +    531124 I
e amaVit1.KB277496              7625 3737 -     10329 T
e apaSpi1.KB929668           5961501 297 -  12308914 T
e cheMyd1.KB478633           2433836 723 +   6037886 T
e chrPic2.chr2              18523590 544 -  68452538 T
e pelSin1.JH211373           2650239  0 -   4257854 I
e melUnd1.JH556589           7680049 6397 -   7952740 T
e taeGut2.chr3              13879677 44 - 112617285 I
e rheMac3.chr8              61693383 6467 + 150158102 T
e macFas5.chr8              58367217 6565 + 146850525 T
e chlSab2.chr8              53287758 6649 + 139301422 T
e panTro4.chr8              55025844 24898 + 143986469 T

a score=217184.000000
s hg38.chr8_KI270814v1_alt     79925 27 +    141812 --GGCCTAAAAACCACTCT----TTCAGA---TTAG
s ponAbe2.chr8              59049502 27 + 153482349 --GGCCTAAAAACCACTCT----TTCAGA---TTAG
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48123105 27 + 100215132 --GGCCTAAAAACCACTCT----TTCAGA---TTAG
i nomLeu3.chr16            C 0 C 0
s calJac3.chr14             99335757 27 + 108792865 --AGCCAGAAAGCTACTCT----TCTAGA---TTAG
i calJac3.chr14            C 0 C 0
s saiBol1.JH378126          24002170 27 +  27210278 --agccagaaagctactCT----TCTAGA---TTAG
i saiBol1.JH378126         C 0 C 0
s otoGar3.GL873541          21181566 27 -  23169006 --AGCCTGAAAGCCACTCT----TCTAGA---Tcag
i otoGar3.GL873541         C 0 I 326
s vicPac2.KB632437          19207011 27 -  22931326 --cacctgaaagtcgctTT----TCTATA---TTAG
i vicPac2.KB632437         C 0 C 0
s camFer1.KB017763           2801138 27 -   6207710 --CACCTGAAAGTCGCTTT----TCTATA---GTAG
i camFer1.KB017763         C 0 C 0
s orcOrc1.KB316907          10836620 27 +  17242564 --CACCTGGAAGTCACTTT----TCTACA---CTAG
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15             84030325 30 +  91571448 --cacctgaaaaccattCT----TCTAGATTCTTCT
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782           6803409 31 -  14545593 --CATCTAAAAGCCATTCTTCTGTCTAGA---TTAG
i cerSim1.JH767782         C 0 C 0
s felCat8.chrA3            134101311 27 + 140925898 --CACCTACAAGCCAGTCT----TCAAGA---TTAG
i felCat8.chrA3            C 0 C 0
s canFam3.chr17             57834429 27 -  64289059 --TACCTGAAAGCCATTCT----TTTAGA---TTAA
i canFam3.chr17            I 217 C 0
s musFur1.GL896914          13606064 27 -  19722643 --CACCTGAAAGCCATCCT----TCTAGC---TTCG
i musFur1.GL896914         C 0 C 0
s odoRosDiv1.KB229025        3028139 27 +   4816872 --CACCTGAAAGCCATTCT----TCTAGA---TTAG
i odoRosDiv1.KB229025      C 0 C 0
s pteAle1.KB030580          19407557 27 -  23789964 --AGCCTGAAAGCCATTCT----TCTAGA---TTTG
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20       27613270 27 -  46401353 --AACCTGGAAACCATTCT----GCTAGA---TCAG
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629           9960597 27 +  24341844 --agcctggaaaccactCT----GCTAGA---CCAG
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436           1026605 27 -   2788317 --AGCCTGAAAACTACTCT----GCTAGA---TTAG
i dasNov3.JH567436         C 0 C 0
s monDom5.chr8             174690332 31 + 312544902 --TGCACAAAAGGCTCCTTTGTTTTTACA---GTAA
i monDom5.chr8             I 2 I 2
s xenTro7.KB021651          15706301 26 + 117219152 TTTAAATGCAATCTAATTT----ATTTCA---T---
i xenTro7.KB021651         C 0 C 0
e ornAna1.Ultra479           3871811 7152 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637  0 -       895 I
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195       44258 5209 +     59083 T
e pseHum1.KB221193           9789407 578 +  32995986 T
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375358           1019718 687 +   1462937 T
e allMis1.JH737798             80260 1661 +    106177 T
e falPer1.KB391107           2216004 600 -   3101084 T
e falChe1.KB398074           4263387 600 -   7151304 T
e macEug2.GL059506              6470  0 +     21939 I
e galGal4.chr1              24067632 542 + 195276750 T
e geoFor1.JH739914           5157724 543 -   7168866 T
e melGal1.chr1              24929349 4997 + 204065131 T
e anaPla1.KB742960            141378  0 +    531124 I
e amaVit1.KB277496              7625 3737 -     10329 T
e apaSpi1.KB929668           5961501 297 -  12308914 T
e cheMyd1.KB478633           2433836 723 +   6037886 T
e chrPic2.chr2              18523590 544 -  68452538 T
e pelSin1.JH211373           2650239  0 -   4257854 I
e melUnd1.JH556589           7680049 6397 -   7952740 T
e taeGut2.chr3              13879677 44 - 112617285 I
e rheMac3.chr8              61693383 6467 + 150158102 T
e macFas5.chr8              58367217 6565 + 146850525 T
e chlSab2.chr8              53287758 6649 + 139301422 T
e panTro4.chr8              55025844 24898 + 143986469 T

a score=380783.000000
s hg38.chr8_KI270814v1_alt     79952 64 +    141812 ATCCTGGGCAACT-AAA-------------ATTTTAAACACCTAAACAACACC----AAGCACTT---AAAGCTTGAG-AACTTAA
s ponAbe2.chr8              59049529 64 + 153482349 ATCCTGGGCAACT-AAA-------------ATTTTAAACACCTAACCAACACC----AAGCACTT---AAAGCTTGAG-AACTTCA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48123132 34 + 100215132 ATCCTGGGCAACT-AAA-------------ATTTTAAACACCTAAAC--------------------------------------A
i nomLeu3.chr16            C 0 C 0
s calJac3.chr14             99335784 64 + 108792865 ATCCCGGGCAACT-AAA-------------ATTGTAAACACCCAATCAACAGC----AAGGACTT---AAAGCTTGAG-AACTTCA
i calJac3.chr14            C 0 C 0
s saiBol1.JH378126          24002197 65 +  27210278 AGCCTGGGCAACT-GAG-------------ATTGTAAACACCCAAACAACAGG----AAGCACTT-A-AAAGCTTGAG-AACTTCG
i saiBol1.JH378126         C 0 C 0
s vicPac2.KB632437          19207038 66 -  22931326 ATACTAGGCAACT-GAA-------------AACTTAAACACCTAAACAACATC----AAGTATTT-ACAAAACTTGAG-AACTTCA
i vicPac2.KB632437         C 0 C 0
s camFer1.KB017763           2801165 66 -   6207710 CTACTAGGCAACT-AAA-------------AATTTAAACACCTAAACAACATC----AAGCATTT-ACAAAACTTGAG-AACTTCA
i camFer1.KB017763         C 0 C 0
s orcOrc1.KB316907          10836647 66 +  17242564 ACCCCATGCAACT-AAA-------------ACTTTAAACACCTAAACAACATC----AAACGTTT-ACAAAACTTGAG-AACTTCA
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15             84030355 64 +  91571448 TCC-TGAGCAACT-AAA-------------ATTTAAAACAGCTAAACAATGTC----AAGCA-TT-AAAAAGCTTGAG-AGCTTCA
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782           6803440 69 -  14545593 ATC-CGGGCAATT-AAA-------------ATTTTAAACAGCTAAACAACATTTACAAAGCATTT-ACAAAGCTTGAG-AACTTCA
i cerSim1.JH767782         C 0 I 271
s felCat8.chrA3            134101338 65 + 140925898 ATCTTGGGCAACT-AAA-------------ATTTTAAACCCCTAAACAACGGC----AAACATTT-AC-AAACTTGAG-GTCCTCA
i felCat8.chrA3            C 0 C 0
s canFam3.chr17             57834456 66 -  64289059 ATCTTGGGCAACT-AAC-------------ATTTTAGATACCTAAACAATGGC----AAGAGTTT-ATGATACTTGAG-ATGTTCG
i canFam3.chr17            C 0 C 0
s musFur1.GL896914          13606091 66 -  19722643 ATTTTGGGCAACT-AAA-------------ATTTTAAACATCTAAACGGTAGA----AAGCATTT-ATGAACCTTGAG-ACGTCCC
i musFur1.GL896914         C 0 C 0
s odoRosDiv1.KB229025        3028166 66 +   4816872 ATCTCGGGCAACT-AAA-------------ATTTTAAACACCTAAACAACGGC----AAGCATTT-ATGAAACTTGAG-ACCTTCA
i odoRosDiv1.KB229025      C 0 C 0
s pteAle1.KB030580          19407584 68 -  23789964 ATCCCAGGCAACTGAAA-------------ATTTGTAACACCTAAACAACGCT----TAGCATTTAACAGAGCTTGAA-AACTTCA
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20       27613297 67 -  46401353 ATCCTGCCCACCT-AAA-------------ATTTTAAACACGTGAACAACATC----AAGCATGT-ACAAAGCTTAAGAAACTTCA
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629           9960624 67 +  24341844 ATCATGCCCAACT-AAA-------------ATTTTAAACACAGAAACAACATC----AAGCATTT-ACAAAGCTTGAGAAACTCCA
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436           1026632 58 -   2788317 ATCCTGAGCAACT-AAA-------------ACTGTAAACATCTAAATAACACT----AAGC---------AGCTTGAG-TACGTCA
i dasNov3.JH567436         C 0 C 0
s monDom5.chr8             174690365 66 + 312544902 AATTTCTGTATAT-AAA-------------TCATTAGAACATTAAATAACCTC----ACTGTTCT-CTTAGGTTATAA-TACATCA
i monDom5.chr8             I 2 I 3
s xenTro7.KB021651          15706327 65 + 117219152 ---------GACT-TAATGGGCTCAGGTTTATCTTAAACGTACAAACGACTGT----AAATAAAA-A-AAAATGCAAA-AAC----
i xenTro7.KB021651         C 0 C 0
e ornAna1.Ultra479           3871811 7152 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637  0 -       895 I
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195       44258 5209 +     59083 T
e pseHum1.KB221193           9789407 578 +  32995986 T
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375358           1019718 687 +   1462937 T
e allMis1.JH737798             80260 1661 +    106177 T
e falPer1.KB391107           2216004 600 -   3101084 T
e falChe1.KB398074           4263387 600 -   7151304 T
e macEug2.GL059506              6470  0 +     21939 I
e galGal4.chr1              24067632 542 + 195276750 T
e geoFor1.JH739914           5157724 543 -   7168866 T
e melGal1.chr1              24929349 4997 + 204065131 T
e anaPla1.KB742960            141378  0 +    531124 I
e amaVit1.KB277496              7625 3737 -     10329 T
e apaSpi1.KB929668           5961501 297 -  12308914 T
e cheMyd1.KB478633           2433836 723 +   6037886 T
e chrPic2.chr2              18523590 544 -  68452538 T
e pelSin1.JH211373           2650239  0 -   4257854 I
e melUnd1.JH556589           7680049 6397 -   7952740 T
e taeGut2.chr3              13879677 44 - 112617285 I
e rheMac3.chr8              61693383 6467 + 150158102 T
e macFas5.chr8              58367217 6565 + 146850525 T
e otoGar3.GL873541          21181593 326 -  23169006 I
e chlSab2.chr8              53287758 6649 + 139301422 T
e panTro4.chr8              55025844 24898 + 143986469 T

a score=52959.000000
s hg38.chr8_KI270814v1_alt     80016 23 +    141812 ATTTAAGAAAAATGGTTGAACAA
s ponAbe2.chr8              59049593 23 + 153482349 ATTTAAGAAAAATGGTTGAACAA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48123166 23 + 100215132 ATTTAAGAAAAATGGTTGAACAA
i nomLeu3.chr16            C 0 C 0
s calJac3.chr14             99335848  9 + 108792865 GTTTGAGGA--------------
i calJac3.chr14            C 0 C 0
s saiBol1.JH378126          24002262  9 +  27210278 GTTTGAGGA--------------
i saiBol1.JH378126         C 0 C 0
s vicPac2.KB632437          19207104 22 -  22931326 GTTTGGGCA-AACAGTTGGACAA
i vicPac2.KB632437         C 0 C 0
s camFer1.KB017763           2801231 22 -   6207710 GTTTGAGCA-AACAGTTGGACAA
i camFer1.KB017763         C 0 C 0
s orcOrc1.KB316907          10836713 22 +  17242564 GTTTGAGGA-AATGGTTGAACAA
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15             84030419 21 +  91571448 GTTTGCAGA-AACAG-TGAACAA
i equCab2.chr15            C 0 C 0
s felCat8.chrA3            134101403 22 + 140925898 GCATGAGGA-ACCAGTTGAACAA
i felCat8.chrA3            C 0 C 0
s canFam3.chr17             57834522 22 -  64289059 GCATGAGGA-ACTAGCTGAACAA
i canFam3.chr17            C 0 C 0
s musFur1.GL896914          13606157 22 -  19722643 GTGTGAGGA-ACTGGTTGAACAA
i musFur1.GL896914         C 0 C 0
s odoRosDiv1.KB229025        3028232 22 +   4816872 GTGTGAGGA-ACTGGCTGAACAA
i odoRosDiv1.KB229025      C 0 C 0
s pteAle1.KB030580          19407652 22 -  23789964 GTCTGAGGA-AATGGTTGAGCAG
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20       27613364 12 -  46401353 GTTTGAGGA-AAA----------
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629           9960691 12 +  24341844 GTTTGAGGA-AAA----------
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436           1026690 22 -   2788317 ATTGGAGGA-AGAGGCTGAGCAA
i dasNov3.JH567436         C 0 C 0
s monDom5.chr8             174690434 20 + 312544902 --ATGCCAA-AAGCATTATTTAT
i monDom5.chr8             I 3 I 3
s xenTro7.KB021651          15706392 23 + 117219152 GTTAAAAAAAAATGGTTTTCCAG
i xenTro7.KB021651         C 0 C 0
e ornAna1.Ultra479           3871811 7152 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637  0 -       895 I
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195       44258 5209 +     59083 T
e pseHum1.KB221193           9789407 578 +  32995986 T
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375358           1019718 687 +   1462937 T
e allMis1.JH737798             80260 1661 +    106177 T
e falPer1.KB391107           2216004 600 -   3101084 T
e falChe1.KB398074           4263387 600 -   7151304 T
e macEug2.GL059506              6470  0 +     21939 I
e galGal4.chr1              24067632 542 + 195276750 T
e geoFor1.JH739914           5157724 543 -   7168866 T
e melGal1.chr1              24929349 4997 + 204065131 T
e anaPla1.KB742960            141378  0 +    531124 I
e amaVit1.KB277496              7625 3737 -     10329 T
e apaSpi1.KB929668           5961501 297 -  12308914 T
e cheMyd1.KB478633           2433836 723 +   6037886 T
e chrPic2.chr2              18523590 544 -  68452538 T
e pelSin1.JH211373           2650239  0 -   4257854 I
e melUnd1.JH556589           7680049 6397 -   7952740 T
e taeGut2.chr3              13879677 44 - 112617285 I
e cerSim1.JH767782           6803509 271 -  14545593 I
e rheMac3.chr8              61693383 6467 + 150158102 T
e macFas5.chr8              58367217 6565 + 146850525 T
e otoGar3.GL873541          21181593 326 -  23169006 I
e chlSab2.chr8              53287758 6649 + 139301422 T
e panTro4.chr8              55025844 24898 + 143986469 T

a score=620.000000
s hg38.chr8_KI270814v1_alt     80039 2 +    141812 -TT
s ponAbe2.chr8              59049616 2 + 153482349 -TT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48123189 2 + 100215132 -TT
i nomLeu3.chr16            C 0 C 0
s vicPac2.KB632437          19207126 2 -  22931326 -TT
i vicPac2.KB632437         C 0 C 0
s camFer1.KB017763           2801253 2 -   6207710 -TT
i camFer1.KB017763         C 0 I 1
s orcOrc1.KB316907          10836735 2 +  17242564 -TT
i orcOrc1.KB316907         C 0 C 0
s canFam3.chr17             57834544 2 -  64289059 -TT
i canFam3.chr17            C 0 C 0
s musFur1.GL896914          13606179 2 -  19722643 -TT
i musFur1.GL896914         C 0 C 0
s pteAle1.KB030580          19407674 2 -  23789964 -TT
i pteAle1.KB030580         C 0 C 0
s dasNov3.JH567436           1026712 2 -   2788317 -TT
i dasNov3.JH567436         C 0 C 0
s monDom5.chr8             174690457 1 + 312544902 --T
i monDom5.chr8             I 3 I 2
s xenTro7.KB021651          15706415 2 + 117219152 GT-
i xenTro7.KB021651         C 0 C 0
e odoRosDiv1.KB229025        3028254 0 +   4816872 C
e felCat8.chrA3            134101425 0 + 140925898 C
e ornAna1.Ultra479           3871811 7152 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637 0 -       895 I
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195       44258 5209 +     59083 T
e pseHum1.KB221193           9789407 578 +  32995986 T
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375358           1019718 687 +   1462937 T
e allMis1.JH737798             80260 1661 +    106177 T
e falPer1.KB391107           2216004 600 -   3101084 T
e falChe1.KB398074           4263387 600 -   7151304 T
e macEug2.GL059506              6470 0 +     21939 I
e galGal4.chr1              24067632 542 + 195276750 T
e geoFor1.JH739914           5157724 543 -   7168866 T
e melGal1.chr1              24929349 4997 + 204065131 T
e anaPla1.KB742960            141378 0 +    531124 I
e amaVit1.KB277496              7625 3737 -     10329 T
e apaSpi1.KB929668           5961501 297 -  12308914 T
e cheMyd1.KB478633           2433836 723 +   6037886 T
e chrPic2.chr2              18523590 544 -  68452538 T
e pelSin1.JH211373           2650239 0 -   4257854 I
e calJac3.chr14             99335857 0 + 108792865 C
e melUnd1.JH556589           7680049 6397 -   7952740 T
e taeGut2.chr3              13879677 44 - 112617285 I
e equCab2.chr15             84030440 0 +  91571448 C
e triMan1.JH594629           9960703 0 +  24341844 C
e loxAfr3.scaffold_20       27613376 0 -  46401353 C
e cerSim1.JH767782           6803509 271 -  14545593 I
e rheMac3.chr8              61693383 6467 + 150158102 T
e macFas5.chr8              58367217 6565 + 146850525 T
e otoGar3.GL873541          21181593 326 -  23169006 I
e saiBol1.JH378126          24002271 0 +  27210278 C
e chlSab2.chr8              53287758 6649 + 139301422 T
e panTro4.chr8              55025844 24898 + 143986469 T

a score=5005.000000
s hg38.chr8_KI270814v1_alt     80041 1 +    141812 T
s ponAbe2.chr8              59049618 1 + 153482349 T
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48123191 1 + 100215132 T
i nomLeu3.chr16            C 0 C 0
s vicPac2.KB632437          19207128 1 -  22931326 T
i vicPac2.KB632437         C 0 C 0
s orcOrc1.KB316907          10836737 1 +  17242564 T
i orcOrc1.KB316907         C 0 C 0
s felCat8.chrA3            134101425 1 + 140925898 T
i felCat8.chrA3            C 0 C 0
s canFam3.chr17             57834546 1 -  64289059 T
i canFam3.chr17            C 0 C 0
s musFur1.GL896914          13606181 1 -  19722643 T
i musFur1.GL896914         C 0 C 0
s pteAle1.KB030580          19407676 1 -  23789964 T
i pteAle1.KB030580         C 0 C 0
s dasNov3.JH567436           1026714 1 -   2788317 T
i dasNov3.JH567436         C 0 C 0
s xenTro7.KB021651          15706417 1 + 117219152 T
i xenTro7.KB021651         C 0 C 0
e camFer1.KB017763           2801255 1 -   6207710 I
e odoRosDiv1.KB229025        3028254 0 +   4816872 C
e ornAna1.Ultra479           3871811 7152 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637 0 -       895 I
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195       44258 5209 +     59083 T
e pseHum1.KB221193           9789407 578 +  32995986 T
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375358           1019718 687 +   1462937 T
e allMis1.JH737798             80260 1661 +    106177 T
e falPer1.KB391107           2216004 600 -   3101084 T
e falChe1.KB398074           4263387 600 -   7151304 T
e macEug2.GL059506              6470 0 +     21939 I
e galGal4.chr1              24067632 542 + 195276750 T
e geoFor1.JH739914           5157724 543 -   7168866 T
e melGal1.chr1              24929349 4997 + 204065131 T
e anaPla1.KB742960            141378 0 +    531124 I
e amaVit1.KB277496              7625 3737 -     10329 T
e apaSpi1.KB929668           5961501 297 -  12308914 T
e cheMyd1.KB478633           2433836 723 +   6037886 T
e chrPic2.chr2              18523590 544 -  68452538 T
e pelSin1.JH211373           2650239 0 -   4257854 I
e calJac3.chr14             99335857 0 + 108792865 C
e melUnd1.JH556589           7680049 6397 -   7952740 T
e monDom5.chr8             174690458 2 + 312544902 I
e taeGut2.chr3              13879677 44 - 112617285 I
e equCab2.chr15             84030440 0 +  91571448 C
e triMan1.JH594629           9960703 0 +  24341844 C
e loxAfr3.scaffold_20       27613376 0 -  46401353 C
e cerSim1.JH767782           6803509 271 -  14545593 I
e rheMac3.chr8              61693383 6467 + 150158102 T
e macFas5.chr8              58367217 6565 + 146850525 T
e otoGar3.GL873541          21181593 326 -  23169006 I
e saiBol1.JH378126          24002271 0 +  27210278 C
e chlSab2.chr8              53287758 6649 + 139301422 T
e panTro4.chr8              55025844 24898 + 143986469 T

a score=5005.000000
s hg38.chr8_KI270814v1_alt     80042 1 +    141812 T
s ponAbe2.chr8              59049619 1 + 153482349 T
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48123192 1 + 100215132 T
i nomLeu3.chr16            C 0 C 0
s orcOrc1.KB316907          10836738 1 +  17242564 T
i orcOrc1.KB316907         C 0 C 0
s felCat8.chrA3            134101426 1 + 140925898 T
i felCat8.chrA3            C 0 C 0
s canFam3.chr17             57834547 1 -  64289059 T
i canFam3.chr17            C 0 I 64
s musFur1.GL896914          13606182 1 -  19722643 T
i musFur1.GL896914         C 0 I 66
s pteAle1.KB030580          19407677 1 -  23789964 T
i pteAle1.KB030580         C 0 I 764
s dasNov3.JH567436           1026715 1 -   2788317 T
i dasNov3.JH567436         C 0 C 0
s monDom5.chr8             174690460 1 + 312544902 T
i monDom5.chr8             I 2 C 0
s xenTro7.KB021651          15706418 1 + 117219152 T
i xenTro7.KB021651         C 0 C 0
e vicPac2.KB632437          19207129 0 -  22931326 C
e camFer1.KB017763           2801255 1 -   6207710 I
e odoRosDiv1.KB229025        3028254 0 +   4816872 C
e ornAna1.Ultra479           3871811 7152 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637 0 -       895 I
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195       44258 5209 +     59083 T
e pseHum1.KB221193           9789407 578 +  32995986 T
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375358           1019718 687 +   1462937 T
e allMis1.JH737798             80260 1661 +    106177 T
e falPer1.KB391107           2216004 600 -   3101084 T
e falChe1.KB398074           4263387 600 -   7151304 T
e macEug2.GL059506              6470 0 +     21939 I
e galGal4.chr1              24067632 542 + 195276750 T
e geoFor1.JH739914           5157724 543 -   7168866 T
e melGal1.chr1              24929349 4997 + 204065131 T
e anaPla1.KB742960            141378 0 +    531124 I
e amaVit1.KB277496              7625 3737 -     10329 T
e apaSpi1.KB929668           5961501 297 -  12308914 T
e cheMyd1.KB478633           2433836 723 +   6037886 T
e chrPic2.chr2              18523590 544 -  68452538 T
e pelSin1.JH211373           2650239 0 -   4257854 I
e calJac3.chr14             99335857 0 + 108792865 C
e melUnd1.JH556589           7680049 6397 -   7952740 T
e taeGut2.chr3              13879677 44 - 112617285 I
e equCab2.chr15             84030440 0 +  91571448 C
e triMan1.JH594629           9960703 0 +  24341844 C
e loxAfr3.scaffold_20       27613376 0 -  46401353 C
e cerSim1.JH767782           6803509 271 -  14545593 I
e rheMac3.chr8              61693383 6467 + 150158102 T
e macFas5.chr8              58367217 6565 + 146850525 T
e otoGar3.GL873541          21181593 326 -  23169006 I
e saiBol1.JH378126          24002271 0 +  27210278 C
e chlSab2.chr8              53287758 6649 + 139301422 T
e panTro4.chr8              55025844 24898 + 143986469 T

a score=295.000000
s hg38.chr8_KI270814v1_alt     80043 1 +    141812 T
s ponAbe2.chr8              59049620 1 + 153482349 T
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48123193 1 + 100215132 A
i nomLeu3.chr16            C 0 C 0
s orcOrc1.KB316907          10836739 1 +  17242564 T
i orcOrc1.KB316907         C 0 C 0
s monDom5.chr8             174690461 1 + 312544902 T
i monDom5.chr8             C 0 I 6
s xenTro7.KB021651          15706419 1 + 117219152 T
i xenTro7.KB021651         C 0 C 0
e musFur1.GL896914          13606183 66 -  19722643 I
e vicPac2.KB632437          19207129 0 -  22931326 C
e camFer1.KB017763           2801255 1 -   6207710 I
e odoRosDiv1.KB229025        3028254 0 +   4816872 C
e canFam3.chr17             57834548 64 -  64289059 I
e felCat8.chrA3            134101427 0 + 140925898 C
e ornAna1.Ultra479           3871811 7152 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637 0 -       895 I
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195       44258 5209 +     59083 T
e pseHum1.KB221193           9789407 578 +  32995986 T
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375358           1019718 687 +   1462937 T
e allMis1.JH737798             80260 1661 +    106177 T
e falPer1.KB391107           2216004 600 -   3101084 T
e falChe1.KB398074           4263387 600 -   7151304 T
e macEug2.GL059506              6470 0 +     21939 I
e galGal4.chr1              24067632 542 + 195276750 T
e geoFor1.JH739914           5157724 543 -   7168866 T
e melGal1.chr1              24929349 4997 + 204065131 T
e anaPla1.KB742960            141378 0 +    531124 I
e amaVit1.KB277496              7625 3737 -     10329 T
e apaSpi1.KB929668           5961501 297 -  12308914 T
e cheMyd1.KB478633           2433836 723 +   6037886 T
e chrPic2.chr2              18523590 544 -  68452538 T
e pelSin1.JH211373           2650239 0 -   4257854 I
e calJac3.chr14             99335857 0 + 108792865 C
e melUnd1.JH556589           7680049 6397 -   7952740 T
e taeGut2.chr3              13879677 44 - 112617285 I
e dasNov3.JH567436           1026716 0 -   2788317 C
e equCab2.chr15             84030440 0 +  91571448 C
e triMan1.JH594629           9960703 0 +  24341844 C
e loxAfr3.scaffold_20       27613376 0 -  46401353 C
e pteAle1.KB030580          19407678 764 -  23789964 I
e cerSim1.JH767782           6803509 271 -  14545593 I
e rheMac3.chr8              61693383 6467 + 150158102 T
e macFas5.chr8              58367217 6565 + 146850525 T
e otoGar3.GL873541          21181593 326 -  23169006 I
e saiBol1.JH378126          24002271 0 +  27210278 C
e chlSab2.chr8              53287758 6649 + 139301422 T
e panTro4.chr8              55025844 24898 + 143986469 T

a score=-2742.000000
s hg38.chr8_KI270814v1_alt     80044 23 +    141812 GTTTCCACCCTTG---------ATATCTGAAT
s ponAbe2.chr8              59049621 23 + 153482349 GTTTCCACCCTTG---------ATATCTGAAT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48123194 23 + 100215132 GTTTCCACCCTTG---------ATATCTGAAT
i nomLeu3.chr16            C 0 C 0
s calJac3.chr14             99335857  3 + 108792865 -----------------------------AAC
i calJac3.chr14            C 0 C 0
s saiBol1.JH378126          24002271  3 +  27210278 -----------------------------AAC
i saiBol1.JH378126         C 0 C 0
s felCat8.chrA3            134101427 22 + 140925898 -TTACCACCATTA---------ACTTCAGCAT
i felCat8.chrA3            C 0 I 13
s monDom5.chr8             174690468 30 + 312544902 ATGTTTATGTTTA--TATGTACATATATGAAT
i monDom5.chr8             I 6 C 0
s xenTro7.KB021651          15706420 32 + 117219152 TTTTCCATATTTGAGTTTAGATAAATTTGCAT
i xenTro7.KB021651         C 0 I 7
e musFur1.GL896914          13606183 66 -  19722643 I
e vicPac2.KB632437          19207129  0 -  22931326 C
e camFer1.KB017763           2801255  1 -   6207710 I
e odoRosDiv1.KB229025        3028254  0 +   4816872 C
e canFam3.chr17             57834548 64 -  64289059 I
e ornAna1.Ultra479           3871811 7152 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637  0 -       895 I
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195       44258 5209 +     59083 T
e pseHum1.KB221193           9789407 578 +  32995986 T
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375358           1019718 687 +   1462937 T
e allMis1.JH737798             80260 1661 +    106177 T
e falPer1.KB391107           2216004 600 -   3101084 T
e falChe1.KB398074           4263387 600 -   7151304 T
e macEug2.GL059506              6470  0 +     21939 I
e galGal4.chr1              24067632 542 + 195276750 T
e geoFor1.JH739914           5157724 543 -   7168866 T
e melGal1.chr1              24929349 4997 + 204065131 T
e anaPla1.KB742960            141378  0 +    531124 I
e amaVit1.KB277496              7625 3737 -     10329 T
e apaSpi1.KB929668           5961501 297 -  12308914 T
e cheMyd1.KB478633           2433836 723 +   6037886 T
e chrPic2.chr2              18523590 544 -  68452538 T
e pelSin1.JH211373           2650239  0 -   4257854 I
e melUnd1.JH556589           7680049 6397 -   7952740 T
e taeGut2.chr3              13879677 44 - 112617285 I
e dasNov3.JH567436           1026716  0 -   2788317 C
e equCab2.chr15             84030440  0 +  91571448 C
e triMan1.JH594629           9960703  0 +  24341844 C
e loxAfr3.scaffold_20       27613376  0 -  46401353 C
e pteAle1.KB030580          19407678 764 -  23789964 I
e cerSim1.JH767782           6803509 271 -  14545593 I
e orcOrc1.KB316907          10836740  0 +  17242564 C
e rheMac3.chr8              61693383 6467 + 150158102 T
e macFas5.chr8              58367217 6565 + 146850525 T
e otoGar3.GL873541          21181593 326 -  23169006 I
e chlSab2.chr8              53287758 6649 + 139301422 T
e panTro4.chr8              55025844 24898 + 143986469 T

a score=20328.000000
s hg38.chr8_KI270814v1_alt     80067 39 +    141812 -----GGTTAAACAATTTTAAAA---CGAttttttttt----------tttttt---ttt
s ponAbe2.chr8              59049644 39 + 153482349 -----GGTTAAACAATTTTAAAA---TGATTTtttttt----------tttttt---ttt
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48123217 39 + 100215132 -----GGTTAAACAATTTTAAAA---TCCttttttttt----------tttttt---ttt
i nomLeu3.chr16            C 0 C 0
s calJac3.chr14             99335860 43 + 108792865 -----AGTCGAATAATTTTAAAG---TCATGTGTTTTTG---------TTTTTTGGGttt
i calJac3.chr14            C 0 C 0
s saiBol1.JH378126          24002274 44 +  27210278 -----AGTTGAATAATTTTAAAG---TCATGTGTTTTTG--------TTTTTTTGGGTTT
i saiBol1.JH378126         C 0 C 0
s loxAfr3.scaffold_20       27613376 49 -  46401353 -----GGTTAAATAATTTTAAAA---TGATTTTATCTGAACCAATCTAATTCTC---TTT
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629           9960703 25 +  24341844 -----GGTTAAACAATTTTAAAA---TGATTTT---------------------------
i triMan1.JH594629         C 0 C 0
s monDom5.chr8             174690498 39 + 312544902 -----ATATCAATGGCTTGGCAA---TGATTTCTCTTC----------TTTATT---ATG
i monDom5.chr8             C 0 C 0
s xenTro7.KB021651          15706459 43 + 117219152 AGTTGAACTAAGTGTTTTTAAAAGACCAATGTTTTGTT----------ATTTT-------
i xenTro7.KB021651         I 7 N 0
e musFur1.GL896914          13606183 66 -  19722643 I
e vicPac2.KB632437          19207129  0 -  22931326 C
e camFer1.KB017763           2801255  1 -   6207710 I
e odoRosDiv1.KB229025        3028254  0 +   4816872 C
e canFam3.chr17             57834548 64 -  64289059 I
e felCat8.chrA3            134101449 13 + 140925898 I
e ornAna1.Ultra479           3871811 7152 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637  0 -       895 I
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195       44258 5209 +     59083 T
e pseHum1.KB221193           9789407 578 +  32995986 T
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375358           1019718 687 +   1462937 T
e allMis1.JH737798             80260 1661 +    106177 T
e falPer1.KB391107           2216004 600 -   3101084 T
e falChe1.KB398074           4263387 600 -   7151304 T
e macEug2.GL059506              6470  0 +     21939 I
e galGal4.chr1              24067632 542 + 195276750 T
e geoFor1.JH739914           5157724 543 -   7168866 T
e melGal1.chr1              24929349 4997 + 204065131 T
e anaPla1.KB742960            141378  0 +    531124 I
e amaVit1.KB277496              7625 3737 -     10329 T
e apaSpi1.KB929668           5961501 297 -  12308914 T
e cheMyd1.KB478633           2433836 723 +   6037886 T
e chrPic2.chr2              18523590 544 -  68452538 T
e pelSin1.JH211373           2650239  0 -   4257854 I
e melUnd1.JH556589           7680049 6397 -   7952740 T
e taeGut2.chr3              13879677 44 - 112617285 I
e dasNov3.JH567436           1026716  0 -   2788317 C
e equCab2.chr15             84030440  0 +  91571448 C
e pteAle1.KB030580          19407678 764 -  23789964 I
e cerSim1.JH767782           6803509 271 -  14545593 I
e orcOrc1.KB316907          10836740  0 +  17242564 C
e rheMac3.chr8              61693383 6467 + 150158102 T
e macFas5.chr8              58367217 6565 + 146850525 T
e otoGar3.GL873541          21181593 326 -  23169006 I
e chlSab2.chr8              53287758 6649 + 139301422 T
e panTro4.chr8              55025844 24898 + 143986469 T

a score=-9038.000000
s hg38.chr8_KI270814v1_alt     80106 21 +    141812 ttt---------------ttttttttGGTAAATGTG
s ponAbe2.chr8              59049683 11 + 153482349 t-------------------------ggtaaatttg
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48123256 11 + 100215132 t-------------------------ggtaaatttg
i nomLeu3.chr16            C 0 C 0
s calJac3.chr14             99335903 21 + 108792865 tgc---------------tgttttttggtagagaca
i calJac3.chr14            C 0 C 0
s saiBol1.JH378126          24002318 36 +  27210278 TGCTGttttttgtttgtttgttttttggtagagaca
i saiBol1.JH378126         C 0 C 0
s loxAfr3.scaffold_20       27613425  8 -  46401353 T----------------------------GGATGCT
i loxAfr3.scaffold_20      C 0 C 0
s monDom5.chr8             174690537 23 + 312544902 T-------------TAATTGTATCTTTGTATACTTG
i monDom5.chr8             C 0 N 0
e musFur1.GL896914          13606183 66 -  19722643 I
e vicPac2.KB632437          19207129  0 -  22931326 C
e camFer1.KB017763           2801255  1 -   6207710 I
e odoRosDiv1.KB229025        3028254  0 +   4816872 C
e canFam3.chr17             57834548 64 -  64289059 I
e felCat8.chrA3            134101449 13 + 140925898 I
e ornAna1.Ultra479           3871811 7152 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637  0 -       895 I
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195       44258 5209 +     59083 T
e pseHum1.KB221193           9789407 578 +  32995986 T
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375358           1019718 687 +   1462937 T
e allMis1.JH737798             80260 1661 +    106177 T
e falPer1.KB391107           2216004 600 -   3101084 T
e falChe1.KB398074           4263387 600 -   7151304 T
e macEug2.GL059506              6470  0 +     21939 I
e galGal4.chr1              24067632 542 + 195276750 T
e geoFor1.JH739914           5157724 543 -   7168866 T
e melGal1.chr1              24929349 4997 + 204065131 T
e anaPla1.KB742960            141378  0 +    531124 I
e amaVit1.KB277496              7625 3737 -     10329 T
e apaSpi1.KB929668           5961501 297 -  12308914 T
e cheMyd1.KB478633           2433836 723 +   6037886 T
e chrPic2.chr2              18523590 544 -  68452538 T
e pelSin1.JH211373           2650239  0 -   4257854 I
e melUnd1.JH556589           7680049 6397 -   7952740 T
e taeGut2.chr3              13879677 44 - 112617285 I
e dasNov3.JH567436           1026716  0 -   2788317 C
e equCab2.chr15             84030440  0 +  91571448 C
e triMan1.JH594629           9960728  0 +  24341844 C
e pteAle1.KB030580          19407678 764 -  23789964 I
e cerSim1.JH767782           6803509 271 -  14545593 I
e orcOrc1.KB316907          10836740  0 +  17242564 C
e rheMac3.chr8              61693383 6467 + 150158102 T
e macFas5.chr8              58367217 6565 + 146850525 T
e otoGar3.GL873541          21181593 326 -  23169006 I
e chlSab2.chr8              53287758 6649 + 139301422 T
e panTro4.chr8              55025844 24898 + 143986469 T

a score=8407.000000
s hg38.chr8_KI270814v1_alt     80127 12 +    141812 GGACCTC--CATGT
s ponAbe2.chr8              59049694 14 + 153482349 ggacctcagcatgt
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48123267 14 + 100215132 ggacctcagcatgt
i nomLeu3.chr16            C 0 C 0
s calJac3.chr14             99335924 14 + 108792865 gggtctcaccatgt
i calJac3.chr14            C 0 C 0
s saiBol1.JH378126          24002354 14 +  27210278 gggtctcaccatgt
i saiBol1.JH378126         C 0 C 0
s loxAfr3.scaffold_20       27613433 12 -  46401353 GTACTTG--CACGT
i loxAfr3.scaffold_20      C 0 I 853
e musFur1.GL896914          13606183 66 -  19722643 I
e vicPac2.KB632437          19207129  0 -  22931326 C
e camFer1.KB017763           2801255  1 -   6207710 I
e odoRosDiv1.KB229025        3028254  0 +   4816872 C
e canFam3.chr17             57834548 64 -  64289059 I
e felCat8.chrA3            134101449 13 + 140925898 I
e ornAna1.Ultra479           3871811 7152 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637  0 -       895 I
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195       44258 5209 +     59083 T
e pseHum1.KB221193           9789407 578 +  32995986 T
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375358           1019718 687 +   1462937 T
e allMis1.JH737798             80260 1661 +    106177 T
e falPer1.KB391107           2216004 600 -   3101084 T
e falChe1.KB398074           4263387 600 -   7151304 T
e macEug2.GL059506              6470  0 +     21939 I
e galGal4.chr1              24067632 542 + 195276750 T
e geoFor1.JH739914           5157724 543 -   7168866 T
e melGal1.chr1              24929349 4997 + 204065131 T
e anaPla1.KB742960            141378  0 +    531124 I
e amaVit1.KB277496              7625 3737 -     10329 T
e apaSpi1.KB929668           5961501 297 -  12308914 T
e cheMyd1.KB478633           2433836 723 +   6037886 T
e chrPic2.chr2              18523590 544 -  68452538 T
e pelSin1.JH211373           2650239  0 -   4257854 I
e melUnd1.JH556589           7680049 6397 -   7952740 T
e taeGut2.chr3              13879677 44 - 112617285 I
e dasNov3.JH567436           1026716  0 -   2788317 C
e equCab2.chr15             84030440  0 +  91571448 C
e triMan1.JH594629           9960728  0 +  24341844 C
e pteAle1.KB030580          19407678 764 -  23789964 I
e cerSim1.JH767782           6803509 271 -  14545593 I
e orcOrc1.KB316907          10836740  0 +  17242564 C
e rheMac3.chr8              61693383 6467 + 150158102 T
e macFas5.chr8              58367217 6565 + 146850525 T
e otoGar3.GL873541          21181593 326 -  23169006 I
e chlSab2.chr8              53287758 6649 + 139301422 T
e panTro4.chr8              55025844 24898 + 143986469 T

a score=56948.000000
s hg38.chr8_KI270814v1_alt     80139 103 +    141812 GTtgttgcccaggctggtctcggactcctggcctcaagtaagcaatcctcccacctcagcctccccaagtgctgaaattgcaggcatgagtcactacacttgg
s ponAbe2.chr8              59049708  98 + 153482349 -----tgcccaggctagtctcaaactcctggcctcaagtaagcgatcctcccgcctcagcctccccaagtgctgaaattgcaggcatgagtcactacacttgg
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48123281  97 + 100215132 -----tgcccaggctggtcttgaactcctggcctcaagtaagtgatcctcccacctcagcctccccaagtgctgaaattgcaggcatgagtcactacA-TTGG
i nomLeu3.chr16            C 0 C 0
s calJac3.chr14             99335938  98 + 108792865 -----tgcccaggctggtcttaaactcctggactcacgcaatcaatcctcccacctcagtctcccaaagtgctgggattacaggtatgagccaccatgctcgg
i calJac3.chr14            C 0 C 0
s saiBol1.JH378126          24002368  98 +  27210278 -----tgcccaggctggtcttaaactcctggactcaagcaatcaatcctccgacctcagcctccgaaagtgctgggattgtaagtatgagccaccatgcttgg
i saiBol1.JH378126         C 0 C 0
s triMan1.JH594629           9960728   8 +  24341844 ----------------------------------------------------AACTCAGC-------------------------------------------
i triMan1.JH594629         C 0 C 0
e musFur1.GL896914          13606183  66 -  19722643 I
e vicPac2.KB632437          19207129   0 -  22931326 C
e camFer1.KB017763           2801255   1 -   6207710 I
e odoRosDiv1.KB229025        3028254   0 +   4816872 C
e canFam3.chr17             57834548  64 -  64289059 I
e felCat8.chrA3            134101449  13 + 140925898 I
e ornAna1.Ultra479           3871811 7152 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637   0 -       895 I
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195       44258 5209 +     59083 T
e pseHum1.KB221193           9789407 578 +  32995986 T
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375358           1019718 687 +   1462937 T
e allMis1.JH737798             80260 1661 +    106177 T
e falPer1.KB391107           2216004 600 -   3101084 T
e falChe1.KB398074           4263387 600 -   7151304 T
e macEug2.GL059506              6470   0 +     21939 I
e galGal4.chr1              24067632 542 + 195276750 T
e geoFor1.JH739914           5157724 543 -   7168866 T
e melGal1.chr1              24929349 4997 + 204065131 T
e anaPla1.KB742960            141378   0 +    531124 I
e amaVit1.KB277496              7625 3737 -     10329 T
e apaSpi1.KB929668           5961501 297 -  12308914 T
e cheMyd1.KB478633           2433836 723 +   6037886 T
e chrPic2.chr2              18523590 544 -  68452538 T
e pelSin1.JH211373           2650239   0 -   4257854 I
e melUnd1.JH556589           7680049 6397 -   7952740 T
e taeGut2.chr3              13879677  44 - 112617285 I
e dasNov3.JH567436           1026716   0 -   2788317 C
e equCab2.chr15             84030440   0 +  91571448 C
e loxAfr3.scaffold_20       27613445 853 -  46401353 I
e pteAle1.KB030580          19407678 764 -  23789964 I
e cerSim1.JH767782           6803509 271 -  14545593 I
e orcOrc1.KB316907          10836740   0 +  17242564 C
e rheMac3.chr8              61693383 6467 + 150158102 T
e macFas5.chr8              58367217 6565 + 146850525 T
e otoGar3.GL873541          21181593 326 -  23169006 I
e chlSab2.chr8              53287758 6649 + 139301422 T
e panTro4.chr8              55025844 24898 + 143986469 T

a score=430.000000
s hg38.chr8_KI270814v1_alt     80242 1 +    141812 c
s ponAbe2.chr8              59049806 1 + 153482349 c
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48123378 1 + 100215132 C
i nomLeu3.chr16            C 0 C 0
s calJac3.chr14             99336036 1 + 108792865 c
i calJac3.chr14            C 0 C 0
s saiBol1.JH378126          24002466 1 +  27210278 c
i saiBol1.JH378126         C 0 C 0
s otoGar3.GL873541          21181919 1 -  23169006 A
i otoGar3.GL873541         I 326 C 0
e musFur1.GL896914          13606183 66 -  19722643 I
e vicPac2.KB632437          19207129 0 -  22931326 C
e camFer1.KB017763           2801255 1 -   6207710 I
e odoRosDiv1.KB229025        3028254 0 +   4816872 C
e canFam3.chr17             57834548 64 -  64289059 I
e felCat8.chrA3            134101449 13 + 140925898 I
e ornAna1.Ultra479           3871811 7152 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637 0 -       895 I
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195       44258 5209 +     59083 T
e pseHum1.KB221193           9789407 578 +  32995986 T
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375358           1019718 687 +   1462937 T
e allMis1.JH737798             80260 1661 +    106177 T
e falPer1.KB391107           2216004 600 -   3101084 T
e falChe1.KB398074           4263387 600 -   7151304 T
e macEug2.GL059506              6470 0 +     21939 I
e galGal4.chr1              24067632 542 + 195276750 T
e geoFor1.JH739914           5157724 543 -   7168866 T
e melGal1.chr1              24929349 4997 + 204065131 T
e anaPla1.KB742960            141378 0 +    531124 I
e amaVit1.KB277496              7625 3737 -     10329 T
e apaSpi1.KB929668           5961501 297 -  12308914 T
e cheMyd1.KB478633           2433836 723 +   6037886 T
e chrPic2.chr2              18523590 544 -  68452538 T
e pelSin1.JH211373           2650239 0 -   4257854 I
e melUnd1.JH556589           7680049 6397 -   7952740 T
e taeGut2.chr3              13879677 44 - 112617285 I
e dasNov3.JH567436           1026716 0 -   2788317 C
e equCab2.chr15             84030440 0 +  91571448 C
e triMan1.JH594629           9960736 0 +  24341844 C
e loxAfr3.scaffold_20       27613445 853 -  46401353 I
e pteAle1.KB030580          19407678 764 -  23789964 I
e cerSim1.JH767782           6803509 271 -  14545593 I
e orcOrc1.KB316907          10836740 0 +  17242564 C
e rheMac3.chr8              61693383 6467 + 150158102 T
e macFas5.chr8              58367217 6565 + 146850525 T
e chlSab2.chr8              53287758 6649 + 139301422 T
e panTro4.chr8              55025844 24898 + 143986469 T

a score=-259.000000
s hg38.chr8_KI270814v1_alt     80243 1 +    141812 c
s ponAbe2.chr8              59049807 1 + 153482349 c
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48123379 1 + 100215132 C
i nomLeu3.chr16            C 0 C 0
s calJac3.chr14             99336037 1 + 108792865 T
i calJac3.chr14            C 0 C 0
s saiBol1.JH378126          24002467 1 +  27210278 T
i saiBol1.JH378126         C 0 C 0
s otoGar3.GL873541          21181920 1 -  23169006 A
i otoGar3.GL873541         C 0 C 0
s cerSim1.JH767782           6803780 1 -  14545593 C
i cerSim1.JH767782         I 271 C 0
e musFur1.GL896914          13606183 66 -  19722643 I
e vicPac2.KB632437          19207129 0 -  22931326 C
e camFer1.KB017763           2801255 1 -   6207710 I
e odoRosDiv1.KB229025        3028254 0 +   4816872 C
e canFam3.chr17             57834548 64 -  64289059 I
e felCat8.chrA3            134101449 13 + 140925898 I
e ornAna1.Ultra479           3871811 7152 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637 0 -       895 I
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195       44258 5209 +     59083 T
e pseHum1.KB221193           9789407 578 +  32995986 T
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375358           1019718 687 +   1462937 T
e allMis1.JH737798             80260 1661 +    106177 T
e falPer1.KB391107           2216004 600 -   3101084 T
e falChe1.KB398074           4263387 600 -   7151304 T
e macEug2.GL059506              6470 0 +     21939 I
e galGal4.chr1              24067632 542 + 195276750 T
e geoFor1.JH739914           5157724 543 -   7168866 T
e melGal1.chr1              24929349 4997 + 204065131 T
e anaPla1.KB742960            141378 0 +    531124 I
e amaVit1.KB277496              7625 3737 -     10329 T
e apaSpi1.KB929668           5961501 297 -  12308914 T
e cheMyd1.KB478633           2433836 723 +   6037886 T
e chrPic2.chr2              18523590 544 -  68452538 T
e pelSin1.JH211373           2650239 0 -   4257854 I
e melUnd1.JH556589           7680049 6397 -   7952740 T
e taeGut2.chr3              13879677 44 - 112617285 I
e dasNov3.JH567436           1026716 0 -   2788317 C
e equCab2.chr15             84030440 0 +  91571448 C
e triMan1.JH594629           9960736 0 +  24341844 C
e loxAfr3.scaffold_20       27613445 853 -  46401353 I
e pteAle1.KB030580          19407678 764 -  23789964 I
e orcOrc1.KB316907          10836740 0 +  17242564 C
e rheMac3.chr8              61693383 6467 + 150158102 T
e macFas5.chr8              58367217 6565 + 146850525 T
e chlSab2.chr8              53287758 6649 + 139301422 T
e panTro4.chr8              55025844 24898 + 143986469 T

a score=2548.000000
s hg38.chr8_KI270814v1_alt     80244 1 +    141812 T
s ponAbe2.chr8              59049808 1 + 153482349 T
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48123380 1 + 100215132 T
i nomLeu3.chr16            C 0 C 0
s calJac3.chr14             99336038 1 + 108792865 T
i calJac3.chr14            C 0 C 0
s saiBol1.JH378126          24002468 1 +  27210278 T
i saiBol1.JH378126         C 0 C 0
s otoGar3.GL873541          21181921 1 -  23169006 T
i otoGar3.GL873541         C 0 C 0
s cerSim1.JH767782           6803781 1 -  14545593 T
i cerSim1.JH767782         C 0 I 9
s odoRosDiv1.KB229025        3028254 1 +   4816872 T
i odoRosDiv1.KB229025      C 0 C 0
e musFur1.GL896914          13606183 66 -  19722643 I
e vicPac2.KB632437          19207129 0 -  22931326 C
e camFer1.KB017763           2801255 1 -   6207710 I
e canFam3.chr17             57834548 64 -  64289059 I
e felCat8.chrA3            134101449 13 + 140925898 I
e ornAna1.Ultra479           3871811 7152 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637 0 -       895 I
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195       44258 5209 +     59083 T
e pseHum1.KB221193           9789407 578 +  32995986 T
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375358           1019718 687 +   1462937 T
e allMis1.JH737798             80260 1661 +    106177 T
e falPer1.KB391107           2216004 600 -   3101084 T
e falChe1.KB398074           4263387 600 -   7151304 T
e macEug2.GL059506              6470 0 +     21939 I
e galGal4.chr1              24067632 542 + 195276750 T
e geoFor1.JH739914           5157724 543 -   7168866 T
e melGal1.chr1              24929349 4997 + 204065131 T
e anaPla1.KB742960            141378 0 +    531124 I
e amaVit1.KB277496              7625 3737 -     10329 T
e apaSpi1.KB929668           5961501 297 -  12308914 T
e cheMyd1.KB478633           2433836 723 +   6037886 T
e chrPic2.chr2              18523590 544 -  68452538 T
e pelSin1.JH211373           2650239 0 -   4257854 I
e melUnd1.JH556589           7680049 6397 -   7952740 T
e taeGut2.chr3              13879677 44 - 112617285 I
e dasNov3.JH567436           1026716 0 -   2788317 C
e equCab2.chr15             84030440 0 +  91571448 C
e triMan1.JH594629           9960736 0 +  24341844 C
e loxAfr3.scaffold_20       27613445 853 -  46401353 I
e pteAle1.KB030580          19407678 764 -  23789964 I
e orcOrc1.KB316907          10836740 0 +  17242564 C
e rheMac3.chr8              61693383 6467 + 150158102 T
e macFas5.chr8              58367217 6565 + 146850525 T
e chlSab2.chr8              53287758 6649 + 139301422 T
e panTro4.chr8              55025844 24898 + 143986469 T

a score=8040.000000
s hg38.chr8_KI270814v1_alt     80245 4 +    141812 TTTA
s ponAbe2.chr8              59049809 4 + 153482349 TTTA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48123381 4 + 100215132 TTTA
i nomLeu3.chr16            C 0 C 0
s calJac3.chr14             99336039 4 + 108792865 TTTA
i calJac3.chr14            C 0 C 0
s saiBol1.JH378126          24002469 4 +  27210278 TTTA
i saiBol1.JH378126         C 0 C 0
s otoGar3.GL873541          21181922 4 -  23169006 GTAA
i otoGar3.GL873541         C 0 C 0
s equCab2.chr15             84030440 4 +  91571448 TTTA
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782           6803791 4 -  14545593 TTTT
i cerSim1.JH767782         I 9 C 0
s odoRosDiv1.KB229025        3028255 4 +   4816872 TTTA
i odoRosDiv1.KB229025      C 0 C 0
e musFur1.GL896914          13606183 66 -  19722643 I
e vicPac2.KB632437          19207129 0 -  22931326 C
e camFer1.KB017763           2801255 1 -   6207710 I
e canFam3.chr17             57834548 64 -  64289059 I
e felCat8.chrA3            134101449 13 + 140925898 I
e ornAna1.Ultra479           3871811 7152 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637 0 -       895 I
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195       44258 5209 +     59083 T
e pseHum1.KB221193           9789407 578 +  32995986 T
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375358           1019718 687 +   1462937 T
e allMis1.JH737798             80260 1661 +    106177 T
e falPer1.KB391107           2216004 600 -   3101084 T
e falChe1.KB398074           4263387 600 -   7151304 T
e macEug2.GL059506              6470 0 +     21939 I
e galGal4.chr1              24067632 542 + 195276750 T
e geoFor1.JH739914           5157724 543 -   7168866 T
e melGal1.chr1              24929349 4997 + 204065131 T
e anaPla1.KB742960            141378 0 +    531124 I
e amaVit1.KB277496              7625 3737 -     10329 T
e apaSpi1.KB929668           5961501 297 -  12308914 T
e cheMyd1.KB478633           2433836 723 +   6037886 T
e chrPic2.chr2              18523590 544 -  68452538 T
e pelSin1.JH211373           2650239 0 -   4257854 I
e melUnd1.JH556589           7680049 6397 -   7952740 T
e taeGut2.chr3              13879677 44 - 112617285 I
e dasNov3.JH567436           1026716 0 -   2788317 C
e triMan1.JH594629           9960736 0 +  24341844 C
e loxAfr3.scaffold_20       27613445 853 -  46401353 I
e pteAle1.KB030580          19407678 764 -  23789964 I
e orcOrc1.KB316907          10836740 0 +  17242564 C
e rheMac3.chr8              61693383 6467 + 150158102 T
e macFas5.chr8              58367217 6565 + 146850525 T
e chlSab2.chr8              53287758 6649 + 139301422 T
e panTro4.chr8              55025844 24898 + 143986469 T

a score=2955.000000
s hg38.chr8_KI270814v1_alt     80249 1 +    141812 A
s ponAbe2.chr8              59049813 1 + 153482349 A
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48123385 1 + 100215132 A
i nomLeu3.chr16            C 0 C 0
s calJac3.chr14             99336043 1 + 108792865 A
i calJac3.chr14            C 0 C 0
s saiBol1.JH378126          24002473 1 +  27210278 A
i saiBol1.JH378126         C 0 C 0
s otoGar3.GL873541          21181926 1 -  23169006 A
i otoGar3.GL873541         C 0 C 0
s orcOrc1.KB316907          10836740 1 +  17242564 A
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15             84030444 1 +  91571448 A
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782           6803795 1 -  14545593 A
i cerSim1.JH767782         C 0 C 0
s odoRosDiv1.KB229025        3028259 1 +   4816872 C
i odoRosDiv1.KB229025      C 0 C 0
s dasNov3.JH567436           1026716 1 -   2788317 A
i dasNov3.JH567436         C 0 C 0
e musFur1.GL896914          13606183 66 -  19722643 I
e vicPac2.KB632437          19207129 0 -  22931326 C
e camFer1.KB017763           2801255 1 -   6207710 I
e canFam3.chr17             57834548 64 -  64289059 I
e felCat8.chrA3            134101449 13 + 140925898 I
e ornAna1.Ultra479           3871811 7152 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637 0 -       895 I
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195       44258 5209 +     59083 T
e pseHum1.KB221193           9789407 578 +  32995986 T
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375358           1019718 687 +   1462937 T
e allMis1.JH737798             80260 1661 +    106177 T
e falPer1.KB391107           2216004 600 -   3101084 T
e falChe1.KB398074           4263387 600 -   7151304 T
e macEug2.GL059506              6470 0 +     21939 I
e galGal4.chr1              24067632 542 + 195276750 T
e geoFor1.JH739914           5157724 543 -   7168866 T
e melGal1.chr1              24929349 4997 + 204065131 T
e anaPla1.KB742960            141378 0 +    531124 I
e amaVit1.KB277496              7625 3737 -     10329 T
e apaSpi1.KB929668           5961501 297 -  12308914 T
e cheMyd1.KB478633           2433836 723 +   6037886 T
e chrPic2.chr2              18523590 544 -  68452538 T
e pelSin1.JH211373           2650239 0 -   4257854 I
e melUnd1.JH556589           7680049 6397 -   7952740 T
e taeGut2.chr3              13879677 44 - 112617285 I
e triMan1.JH594629           9960736 0 +  24341844 C
e loxAfr3.scaffold_20       27613445 853 -  46401353 I
e pteAle1.KB030580          19407678 764 -  23789964 I
e rheMac3.chr8              61693383 6467 + 150158102 T
e macFas5.chr8              58367217 6565 + 146850525 T
e chlSab2.chr8              53287758 6649 + 139301422 T
e panTro4.chr8              55025844 24898 + 143986469 T

a score=95378.000000
s hg38.chr8_KI270814v1_alt     80250 36 +    141812 AATGATTTTAGTGAAGGCAATCTAATTC-ACTTTAGA
s ponAbe2.chr8              59049814 36 + 153482349 AATGATTTTAATGAAGGCAATCTAATTC-ACCGTAGA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48123386 36 + 100215132 AATGATTTTAGTGAAGGCAACCTAATTC-ACTTTAGA
i nomLeu3.chr16            C 0 C 0
s calJac3.chr14             99336044 36 + 108792865 CATGATTTTAATGGAGGCAATCTAATTT-ACTTCAGA
i calJac3.chr14            C 0 C 0
s saiBol1.JH378126          24002474 36 +  27210278 CATGATTTTAATGGAGGCCATCTAATTT-ACTTCAGA
i saiBol1.JH378126         C 0 C 0
s otoGar3.GL873541          21181927 36 -  23169006 GAGGAATTTAATAGAAGCAATCTAACTC-ACTTAAGA
i otoGar3.GL873541         C 0 C 0
s vicPac2.KB632437          19207129 35 -  22931326 AGTGATTTTAACCACGACCATCT-GTTC-ACTCCAGG
i vicPac2.KB632437         C 0 I 2
s camFer1.KB017763           2801256 35 -   6207710 AGTGATTTTAACTGCGACCATCC-ATTC-ACTCCAGG
i camFer1.KB017763         I 1 I 2
s orcOrc1.KB316907          10836741 35 +  17242564 AATGATTTTAACTGCAGCAATCT-GTTC-ACTCTGAG
i orcOrc1.KB316907         C 0 I 2
s equCab2.chr15             84030445 35 +  91571448 AATCATTTGAACTGCGGCAATCG-ATCC-ACTTTGAG
i equCab2.chr15            C 0 I 2
s cerSim1.JH767782           6803796 31 -  14545593 AATGACTG----TGCGGCAATCA-ATTC-ACTTTGAG
i cerSim1.JH767782         C 0 I 2
s odoRosDiv1.KB229025        3028260 34 +   4816872 CACGATTA--ACTACAGCAATCT-ATTCAACTTTGAG
i odoRosDiv1.KB229025      C 0 I 2
s triMan1.JH594629           9960736 19 +  24341844 -----------------CAATATAATTC-TCTTTCGG
i triMan1.JH594629         C 0 I 2
s dasNov3.JH567436           1026717 36 -   2788317 AATGATTTTTACTGAGACAATCTAATTC-ACTTTCAG
i dasNov3.JH567436         C 0 I 2
e musFur1.GL896914          13606183 66 -  19722643 I
e canFam3.chr17             57834548 64 -  64289059 I
e felCat8.chrA3            134101449 13 + 140925898 I
e ornAna1.Ultra479           3871811 7152 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637  0 -       895 I
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195       44258 5209 +     59083 T
e pseHum1.KB221193           9789407 578 +  32995986 T
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375358           1019718 687 +   1462937 T
e allMis1.JH737798             80260 1661 +    106177 T
e falPer1.KB391107           2216004 600 -   3101084 T
e falChe1.KB398074           4263387 600 -   7151304 T
e macEug2.GL059506              6470  0 +     21939 I
e galGal4.chr1              24067632 542 + 195276750 T
e geoFor1.JH739914           5157724 543 -   7168866 T
e melGal1.chr1              24929349 4997 + 204065131 T
e anaPla1.KB742960            141378  0 +    531124 I
e amaVit1.KB277496              7625 3737 -     10329 T
e apaSpi1.KB929668           5961501 297 -  12308914 T
e cheMyd1.KB478633           2433836 723 +   6037886 T
e chrPic2.chr2              18523590 544 -  68452538 T
e pelSin1.JH211373           2650239  0 -   4257854 I
e melUnd1.JH556589           7680049 6397 -   7952740 T
e taeGut2.chr3              13879677 44 - 112617285 I
e loxAfr3.scaffold_20       27613445 853 -  46401353 I
e pteAle1.KB030580          19407678 764 -  23789964 I
e rheMac3.chr8              61693383 6467 + 150158102 T
e macFas5.chr8              58367217 6565 + 146850525 T
e chlSab2.chr8              53287758 6649 + 139301422 T
e panTro4.chr8              55025844 24898 + 143986469 T

a score=39422.000000
s hg38.chr8_KI270814v1_alt     80286 17 +    141812 GTTGAATTCTCAAGTAA
s ponAbe2.chr8              59049850 17 + 153482349 GCTGAATTCTCAAGTAA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48123422 17 + 100215132 GTTGAATTCTCAAGTAA
i nomLeu3.chr16            C 0 C 0
s calJac3.chr14             99336080 17 + 108792865 GTTGGATTCTCATGGAA
i calJac3.chr14            C 0 C 0
s saiBol1.JH378126          24002510 17 +  27210278 ATTGGATTCTCATGGAA
i saiBol1.JH378126         C 0 C 0
s otoGar3.GL873541          21181963 17 -  23169006 GCTGGCTTCTCCACTAA
i otoGar3.GL873541         C 0 C 0
s vicPac2.KB632437          19207166 16 -  22931326 GTGAGGTTCTCGGGAT-
i vicPac2.KB632437         I 2 C 0
s camFer1.KB017763           2801293 16 -   6207710 GTGAGGTTCTCGGGAT-
i camFer1.KB017763         I 2 C 0
s orcOrc1.KB316907          10836778 16 +  17242564 GTTGGGTTCTCAGGGA-
i orcOrc1.KB316907         I 2 C 0
s equCab2.chr15             84030482 16 +  91571448 GCTGG-TCCTAGGGGAA
i equCab2.chr15            I 2 C 0
s cerSim1.JH767782           6803829 17 -  14545593 GGTGGCTTCTCGGGGAA
i cerSim1.JH767782         I 2 C 0
s felCat8.chrA3            134101462 17 + 140925898 GTTGGATTCCGGGGGGA
i felCat8.chrA3            I 13 C 0
s odoRosDiv1.KB229025        3028296 17 +   4816872 GTCAGATTCTGGGGGGA
i odoRosDiv1.KB229025      I 2 C 0
s triMan1.JH594629           9960757 17 +  24341844 GTTGCATTCTCAGATAA
i triMan1.JH594629         I 2 C 0
s dasNov3.JH567436           1026755 16 -   2788317 GTCAGATTCTCATA-AA
i dasNov3.JH567436         I 2 C 0
e musFur1.GL896914          13606183 66 -  19722643 I
e canFam3.chr17             57834548 64 -  64289059 I
e ornAna1.Ultra479           3871811 7152 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637  0 -       895 I
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195       44258 5209 +     59083 T
e pseHum1.KB221193           9789407 578 +  32995986 T
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375358           1019718 687 +   1462937 T
e allMis1.JH737798             80260 1661 +    106177 T
e falPer1.KB391107           2216004 600 -   3101084 T
e falChe1.KB398074           4263387 600 -   7151304 T
e macEug2.GL059506              6470  0 +     21939 I
e galGal4.chr1              24067632 542 + 195276750 T
e geoFor1.JH739914           5157724 543 -   7168866 T
e melGal1.chr1              24929349 4997 + 204065131 T
e anaPla1.KB742960            141378  0 +    531124 I
e amaVit1.KB277496              7625 3737 -     10329 T
e apaSpi1.KB929668           5961501 297 -  12308914 T
e cheMyd1.KB478633           2433836 723 +   6037886 T
e chrPic2.chr2              18523590 544 -  68452538 T
e pelSin1.JH211373           2650239  0 -   4257854 I
e melUnd1.JH556589           7680049 6397 -   7952740 T
e taeGut2.chr3              13879677 44 - 112617285 I
e loxAfr3.scaffold_20       27613445 853 -  46401353 I
e pteAle1.KB030580          19407678 764 -  23789964 I
e rheMac3.chr8              61693383 6467 + 150158102 T
e macFas5.chr8              58367217 6565 + 146850525 T
e chlSab2.chr8              53287758 6649 + 139301422 T
e panTro4.chr8              55025844 24898 + 143986469 T

a score=384202.000000
s hg38.chr8_KI270814v1_alt     80303  98 +    141812 CTGCTTTT-AA--AGGTACTTTCTCAACCTACGCAAAGCTCTTAATAGGCCATGACTGTTTGGCCAACTTCTA--CATTGTA-------------CATCAGA-TGTTTTCTCTTCTG
s ponAbe2.chr8              59049867  99 + 153482349 CTGCTTTTCAA--AGGTACTTTCTCAACCTACGCAAAGCTCTTAATAGGCCATGACTATTTGGCCAACTTCTA--CATTGTA-------------CATCAGA-TGTTTTCTTTTCTG
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48123439  99 + 100215132 CTGCTTTTCAA--AGGTACTTTCTCAATCTACGCAAAGCTCTTAATAGGCCATGACTATTTGGCCAACTTCTA--CATTGTA-------------CATCAGA-TGTTTTCTCTTCTG
i nomLeu3.chr16            C 0 C 0
s calJac3.chr14             99336097  95 + 108792865 CTGCTTTTCAA--ATGCTCTTTTTC-ATCTATGGCAAGGCCTTCACAGCCCATGACTATCTGGCCAACATCTA--TATTCTT-------------CATCAGATTGTCTTCT----GA
i calJac3.chr14            C 0 C 0
s saiBol1.JH378126          24002527  98 +  27210278 CT-CTTTTCTA--ATGCTCTTTCTC-ATCTATGGCAAGGCCTTCACAGCGCATGACTATCTGGCTAACATCTA--CGTTCTT-------------CATCAGATTGTCTTCTCCTGTG
i saiBol1.JH378126         C 0 C 0
s otoGar3.GL873541          21181980  92 -  23169006 CTGCTTTTCAG--ATGTTCTTTCCC-AT-----GGAAGCTTTTTATAGCCCATGACTATATGGCCAACTTCTACTCCTTCAT-------------CATCAGA-TGTCTTCTC---TG
i otoGar3.GL873541         C 0 C 0
s vicPac2.KB632437          19207182  87 -  22931326 CTGCTTTTCAG--ATG-CTCCCTCTC-----------GCCCTCTCCAGCCCAGGTCTGTTTGGCCAACGTCTA--CATCCTT-------------CATCAGA-CGGGCCCTCCTCTG
i vicPac2.KB632437         C 0 C 0
s camFer1.KB017763           2801309  88 -   6207710 CTGCTTTTCAG--ATGCCCCCCTCTC-----------GCCCTCTCCAGCCCAGGTCTGTTTGGCCAATGTCTA--CATCCTT-------------CATCAGA-CGTGCCCTCCTCTG
i camFer1.KB017763         C 0 C 0
s orcOrc1.KB316907          10836794  81 +  17242564 CTGCTTTTCGG--ACG-------CTC-----------TTTCCTTCCAGCCCAGGTGTGTCTGGTCCGTGTGTA--CAGGCTT-------------CATCAGA-TGTGTGCTCCTCTG
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15             84030498  91 +  91571448 CTGCTTTCCCA--ATGCCCTTTCCTA-CCCGTGGGAAGCCCTTTCCAGCCTG----TGTCTGGCCA--GTGTC--TACTCCT-------------CTTCAGA-TGTG-CCCCCTATG
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782           6803846  98 -  14545593 CTGCTTTTCCA--ATGCTCTTTCTTC-CCCGTGGAAAGCCCCTTCCAGCCTGCATCTGTCTGGCCAACGTGCA--TATCCTT-------------CATCACA-TGTGTCCCCCTCGG
i cerSim1.JH767782         C 0 C 0
s felCat8.chrA3            134101479  98 + 140925898 ATGCTTTTCAG--ACATTCTTTCTTC-CCCACAGAGAGCCCTTTCCAGCCCACTTCTGTTTGGCCCACATCTA--CATCTTT-------------CACTGGA-TGCGTCCTCTTCTG
i felCat8.chrA3            C 0 I 1
s canFam3.chr17             57834612 101 -  64289059 CTGCTTTTCAAATATATTCCTCCTTCGCCCACGGAAAGTCTTTTCCAGCCCACTTCTGTTTGGCCCACATGAG--TATCCTT-------------CATCAGG-TATGTCCTCCTCTG
i canFam3.chr17            I 64 I 628
s musFur1.GL896914          13606249  99 -  19722643 CTGCTTTTCAA--GTGTTCCTCCTTCCCCCGCGGACAGCACATTCCAGCCCACTTCTGTTTGGCCCGCGTGGC--CATCCTT-------------CATGGGA-TGTGTCCTCCTCTG
i musFur1.GL896914         I 66 I 1
s odoRosDiv1.KB229025        3028313  99 +   4816872 CTGCTTTTCAA--ACGTTCCTCCTTCCCCCACGGACAGCCCTTTCCAGCCCACTTCTGTTTGGCCCACATGTA--CATCCTT-------------CATCGGA-TGTGTCCTCCTCTG
i odoRosDiv1.KB229025      C 0 I 1
s triMan1.JH594629           9960774 104 +  24341844 CTGcttttcaa--atgctctttcct------tggaaagccctttacagctcatgtctatttcaccaacttcta--catccttcaagacaatccaacatc-aa-tgtctcctctgga-
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436           1026771 105 -   2788317 CTGctttccaa--atgccctttcctc-cgcatgggatgtcttttccagctcctgtctatttgatcaacttcta--tatcctt-----caacccagcagcaaa-tgtctcctctcca-
i dasNov3.JH567436         C 0 C 0
e ornAna1.Ultra479           3871811 7152 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637   0 -       895 I
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195       44258 5209 +     59083 T
e pseHum1.KB221193           9789407 578 +  32995986 T
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375358           1019718 687 +   1462937 T
e allMis1.JH737798             80260 1661 +    106177 T
e falPer1.KB391107           2216004 600 -   3101084 T
e falChe1.KB398074           4263387 600 -   7151304 T
e macEug2.GL059506              6470   0 +     21939 I
e galGal4.chr1              24067632 542 + 195276750 T
e geoFor1.JH739914           5157724 543 -   7168866 T
e melGal1.chr1              24929349 4997 + 204065131 T
e anaPla1.KB742960            141378   0 +    531124 I
e amaVit1.KB277496              7625 3737 -     10329 T
e apaSpi1.KB929668           5961501 297 -  12308914 T
e cheMyd1.KB478633           2433836 723 +   6037886 T
e chrPic2.chr2              18523590 544 -  68452538 T
e pelSin1.JH211373           2650239   0 -   4257854 I
e melUnd1.JH556589           7680049 6397 -   7952740 T
e taeGut2.chr3              13879677  44 - 112617285 I
e loxAfr3.scaffold_20       27613445 853 -  46401353 I
e pteAle1.KB030580          19407678 764 -  23789964 I
e rheMac3.chr8              61693383 6467 + 150158102 T
e macFas5.chr8              58367217 6565 + 146850525 T
e chlSab2.chr8              53287758 6649 + 139301422 T
e panTro4.chr8              55025844 24898 + 143986469 T

a score=24546.000000
s hg38.chr8_KI270814v1_alt     80401 8 +    141812 TGACCTCC--
s ponAbe2.chr8              59049966 8 + 153482349 TGAACTCC--
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48123538 8 + 100215132 TGAACTCC--
i nomLeu3.chr16            C 0 C 0
s calJac3.chr14             99336192 8 + 108792865 TAAACTGT--
i calJac3.chr14            C 0 C 0
s saiBol1.JH378126          24002625 8 +  27210278 TAAACTGT--
i saiBol1.JH378126         C 0 C 0
s otoGar3.GL873541          21182072 8 -  23169006 TAAACTCC--
i otoGar3.GL873541         C 0 C 0
s vicPac2.KB632437          19207269 8 -  22931326 GGAactcc--
i vicPac2.KB632437         C 0 C 0
s camFer1.KB017763           2801397 8 -   6207710 GGAactcc--
i camFer1.KB017763         C 0 C 0
s orcOrc1.KB316907          10836875 8 +  17242564 TAAACTCC--
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15             84030589 8 +  91571448 TCAACTCC--
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782           6803944 8 -  14545593 TAAACTCC--
i cerSim1.JH767782         C 0 C 0
s felCat8.chrA3            134101578 7 + 140925898 -AAACCCC--
i felCat8.chrA3            I 1 C 0
s musFur1.GL896914          13606349 7 -  19722643 -CGACTCC--
i musFur1.GL896914         I 1 I 958
s odoRosDiv1.KB229025        3028413 7 +   4816872 -AGACTCC--
i odoRosDiv1.KB229025      I 1 C 0
s triMan1.JH594629           9960878 8 +  24341844 --aacccacc
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436           1026876 8 -   2788317 --AACCCATA
i dasNov3.JH567436         C 0 C 0
e canFam3.chr17             57834713 628 -  64289059 I
e ornAna1.Ultra479           3871811 7152 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637 0 -       895 I
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195       44258 5209 +     59083 T
e pseHum1.KB221193           9789407 578 +  32995986 T
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375358           1019718 687 +   1462937 T
e allMis1.JH737798             80260 1661 +    106177 T
e falPer1.KB391107           2216004 600 -   3101084 T
e falChe1.KB398074           4263387 600 -   7151304 T
e macEug2.GL059506              6470 0 +     21939 I
e galGal4.chr1              24067632 542 + 195276750 T
e geoFor1.JH739914           5157724 543 -   7168866 T
e melGal1.chr1              24929349 4997 + 204065131 T
e anaPla1.KB742960            141378 0 +    531124 I
e amaVit1.KB277496              7625 3737 -     10329 T
e apaSpi1.KB929668           5961501 297 -  12308914 T
e cheMyd1.KB478633           2433836 723 +   6037886 T
e chrPic2.chr2              18523590 544 -  68452538 T
e pelSin1.JH211373           2650239 0 -   4257854 I
e melUnd1.JH556589           7680049 6397 -   7952740 T
e taeGut2.chr3              13879677 44 - 112617285 I
e loxAfr3.scaffold_20       27613445 853 -  46401353 I
e pteAle1.KB030580          19407678 764 -  23789964 I
e rheMac3.chr8              61693383 6467 + 150158102 T
e macFas5.chr8              58367217 6565 + 146850525 T
e chlSab2.chr8              53287758 6649 + 139301422 T
e panTro4.chr8              55025844 24898 + 143986469 T

a score=6392.000000
s hg38.chr8_KI270814v1_alt     80409 1 +    141812 A
s ponAbe2.chr8              59049974 1 + 153482349 A
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48123546 1 + 100215132 A
i nomLeu3.chr16            C 0 C 0
s calJac3.chr14             99336200 1 + 108792865 G
i calJac3.chr14            C 0 C 0
s saiBol1.JH378126          24002633 1 +  27210278 G
i saiBol1.JH378126         C 0 C 0
s otoGar3.GL873541          21182080 1 -  23169006 A
i otoGar3.GL873541         C 0 C 0
s vicPac2.KB632437          19207277 1 -  22931326 a
i vicPac2.KB632437         C 0 I 5
s camFer1.KB017763           2801405 1 -   6207710 a
i camFer1.KB017763         C 0 I 5
s orcOrc1.KB316907          10836883 1 +  17242564 A
i orcOrc1.KB316907         C 0 I 5
s equCab2.chr15             84030597 1 +  91571448 A
i equCab2.chr15            C 0 I 5
s cerSim1.JH767782           6803952 1 -  14545593 A
i cerSim1.JH767782         C 0 I 5
s felCat8.chrA3            134101585 1 + 140925898 A
i felCat8.chrA3            C 0 I 875
s odoRosDiv1.KB229025        3028420 1 +   4816872 A
i odoRosDiv1.KB229025      C 0 I 612
s triMan1.JH594629           9960886 1 +  24341844 a
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436           1026884 1 -   2788317 A
i dasNov3.JH567436         C 0 C 0
e musFur1.GL896914          13606356 958 -  19722643 I
e canFam3.chr17             57834713 628 -  64289059 I
e ornAna1.Ultra479           3871811 7152 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637 0 -       895 I
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195       44258 5209 +     59083 T
e pseHum1.KB221193           9789407 578 +  32995986 T
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375358           1019718 687 +   1462937 T
e allMis1.JH737798             80260 1661 +    106177 T
e falPer1.KB391107           2216004 600 -   3101084 T
e falChe1.KB398074           4263387 600 -   7151304 T
e macEug2.GL059506              6470 0 +     21939 I
e galGal4.chr1              24067632 542 + 195276750 T
e geoFor1.JH739914           5157724 543 -   7168866 T
e melGal1.chr1              24929349 4997 + 204065131 T
e anaPla1.KB742960            141378 0 +    531124 I
e amaVit1.KB277496              7625 3737 -     10329 T
e apaSpi1.KB929668           5961501 297 -  12308914 T
e cheMyd1.KB478633           2433836 723 +   6037886 T
e chrPic2.chr2              18523590 544 -  68452538 T
e pelSin1.JH211373           2650239 0 -   4257854 I
e melUnd1.JH556589           7680049 6397 -   7952740 T
e taeGut2.chr3              13879677 44 - 112617285 I
e loxAfr3.scaffold_20       27613445 853 -  46401353 I
e pteAle1.KB030580          19407678 764 -  23789964 I
e rheMac3.chr8              61693383 6467 + 150158102 T
e macFas5.chr8              58367217 6565 + 146850525 T
e chlSab2.chr8              53287758 6649 + 139301422 T
e panTro4.chr8              55025844 24898 + 143986469 T

a score=-21493.000000
s hg38.chr8_KI270814v1_alt     80410 6 +    141812 AGTTCA--
s ponAbe2.chr8              59049975 4 + 153482349 AGTT----
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48123547 4 + 100215132 AGTT----
i nomLeu3.chr16            C 0 C 0
s calJac3.chr14             99336201 4 + 108792865 AGTT----
i calJac3.chr14            C 0 C 0
s saiBol1.JH378126          24002634 4 +  27210278 AGTT----
i saiBol1.JH378126         C 0 C 0
s otoGar3.GL873541          21182081 4 -  23169006 AATT----
i otoGar3.GL873541         C 0 C 0
s vicPac2.KB632437          19207283 1 -  22931326 a-------
i vicPac2.KB632437         I 5 I 406
s camFer1.KB017763           2801411 1 -   6207710 a-------
i camFer1.KB017763         I 5 C 0
s orcOrc1.KB316907          10836889 1 +  17242564 A-------
i orcOrc1.KB316907         I 5 C 0
s equCab2.chr15             84030603 1 +  91571448 A-------
i equCab2.chr15            I 5 C 0
s cerSim1.JH767782           6803958 1 -  14545593 A-------
i cerSim1.JH767782         I 5 C 0
s triMan1.JH594629           9960887 6 +  24341844 aact--cc
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436           1026885 6 -   2788317 AACT--CC
i dasNov3.JH567436         C 0 C 0
e musFur1.GL896914          13606356 958 -  19722643 I
e odoRosDiv1.KB229025        3028421 612 +   4816872 I
e canFam3.chr17             57834713 628 -  64289059 I
e felCat8.chrA3            134101586 875 + 140925898 I
e ornAna1.Ultra479           3871811 7152 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637 0 -       895 I
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195       44258 5209 +     59083 T
e pseHum1.KB221193           9789407 578 +  32995986 T
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375358           1019718 687 +   1462937 T
e allMis1.JH737798             80260 1661 +    106177 T
e falPer1.KB391107           2216004 600 -   3101084 T
e falChe1.KB398074           4263387 600 -   7151304 T
e macEug2.GL059506              6470 0 +     21939 I
e galGal4.chr1              24067632 542 + 195276750 T
e geoFor1.JH739914           5157724 543 -   7168866 T
e melGal1.chr1              24929349 4997 + 204065131 T
e anaPla1.KB742960            141378 0 +    531124 I
e amaVit1.KB277496              7625 3737 -     10329 T
e apaSpi1.KB929668           5961501 297 -  12308914 T
e cheMyd1.KB478633           2433836 723 +   6037886 T
e chrPic2.chr2              18523590 544 -  68452538 T
e pelSin1.JH211373           2650239 0 -   4257854 I
e melUnd1.JH556589           7680049 6397 -   7952740 T
e taeGut2.chr3              13879677 44 - 112617285 I
e loxAfr3.scaffold_20       27613445 853 -  46401353 I
e pteAle1.KB030580          19407678 764 -  23789964 I
e rheMac3.chr8              61693383 6467 + 150158102 T
e macFas5.chr8              58367217 6565 + 146850525 T
e chlSab2.chr8              53287758 6649 + 139301422 T
e panTro4.chr8              55025844 24898 + 143986469 T

a score=79639.000000
s hg38.chr8_KI270814v1_alt     80416 31 +    141812 AGTTTGCTGTTAGGTGAGCCCACCTCTGCtt
s ponAbe2.chr8              59049979 27 + 153482349 ----TGCTGTTAGGGAAGCCCACCTCTGCCt
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48123551 27 + 100215132 ----TGCTGTTAGGTAAGCCCACCTCTGCtt
i nomLeu3.chr16            C 0 C 0
s calJac3.chr14             99336205 27 + 108792865 ----CACTGCTAGATAAGCCCACCTCCGCCT
i calJac3.chr14            C 0 C 0
s saiBol1.JH378126          24002638 27 +  27210278 ----CACTGTTAGATAAGCCCACCTCTGCCT
i saiBol1.JH378126         C 0 C 0
s otoGar3.GL873541          21182085 27 -  23169006 ----CACTGTTTGGTAAGCCCGCACCTGCTT
i otoGar3.GL873541         C 0 C 0
s camFer1.KB017763           2801412 25 -   6207710 ------ccaccggcccaccccaccccTGCTT
i camFer1.KB017763         C 0 I 637
s orcOrc1.KB316907          10836890 25 +  17242564 ------GTGCCCGGTCAGCCCACCTCCGCTT
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15             84030604 25 +  91571448 ------CTGCCAGTCAAGCCCACCTCTGCTT
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782           6803959 25 -  14545593 ------CTGCCAGTCAACCTCACCTCTGCTT
i cerSim1.JH767782         C 0 C 0
s triMan1.JH594629           9960893 31 +  24341844 aagtaactgttagttaagcccacccctgctt
i triMan1.JH594629         C 0 C 0
s dasNov3.JH567436           1026891 31 -   2788317 AAGCAACCACTGGTTAAGCCCAGCTCAGCTT
i dasNov3.JH567436         C 0 I 2299
e musFur1.GL896914          13606356 958 -  19722643 I
e vicPac2.KB632437          19207284 406 -  22931326 I
e odoRosDiv1.KB229025        3028421 612 +   4816872 I
e canFam3.chr17             57834713 628 -  64289059 I
e felCat8.chrA3            134101586 875 + 140925898 I
e ornAna1.Ultra479           3871811 7152 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637  0 -       895 I
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195       44258 5209 +     59083 T
e pseHum1.KB221193           9789407 578 +  32995986 T
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375358           1019718 687 +   1462937 T
e allMis1.JH737798             80260 1661 +    106177 T
e falPer1.KB391107           2216004 600 -   3101084 T
e falChe1.KB398074           4263387 600 -   7151304 T
e macEug2.GL059506              6470  0 +     21939 I
e galGal4.chr1              24067632 542 + 195276750 T
e geoFor1.JH739914           5157724 543 -   7168866 T
e melGal1.chr1              24929349 4997 + 204065131 T
e anaPla1.KB742960            141378  0 +    531124 I
e amaVit1.KB277496              7625 3737 -     10329 T
e apaSpi1.KB929668           5961501 297 -  12308914 T
e cheMyd1.KB478633           2433836 723 +   6037886 T
e chrPic2.chr2              18523590 544 -  68452538 T
e pelSin1.JH211373           2650239  0 -   4257854 I
e melUnd1.JH556589           7680049 6397 -   7952740 T
e taeGut2.chr3              13879677 44 - 112617285 I
e loxAfr3.scaffold_20       27613445 853 -  46401353 I
e pteAle1.KB030580          19407678 764 -  23789964 I
e rheMac3.chr8              61693383 6467 + 150158102 T
e macFas5.chr8              58367217 6565 + 146850525 T
e chlSab2.chr8              53287758 6649 + 139301422 T
e panTro4.chr8              55025844 24898 + 143986469 T

a score=2152.000000
s hg38.chr8_KI270814v1_alt     80447 1 +    141812 t
s ponAbe2.chr8              59050006 1 + 153482349 t
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48123578 1 + 100215132 t
i nomLeu3.chr16            C 0 C 0
s calJac3.chr14             99336232 1 + 108792865 T
i calJac3.chr14            C 0 C 0
s saiBol1.JH378126          24002665 1 +  27210278 T
i saiBol1.JH378126         C 0 C 0
s otoGar3.GL873541          21182112 1 -  23169006 T
i otoGar3.GL873541         C 0 I 609
s orcOrc1.KB316907          10836915 1 +  17242564 C
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15             84030629 1 +  91571448 T
i equCab2.chr15            C 0 C 0
s cerSim1.JH767782           6803984 1 -  14545593 T
i cerSim1.JH767782         C 0 C 0
s triMan1.JH594629           9960924 1 +  24341844 c
i triMan1.JH594629         C 0 C 0
e musFur1.GL896914          13606356 958 -  19722643 I
e vicPac2.KB632437          19207284 406 -  22931326 I
e camFer1.KB017763           2801437 637 -   6207710 I
e odoRosDiv1.KB229025        3028421 612 +   4816872 I
e canFam3.chr17             57834713 628 -  64289059 I
e felCat8.chrA3            134101586 875 + 140925898 I
e ornAna1.Ultra479           3871811 7152 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637 0 -       895 I
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195       44258 5209 +     59083 T
e pseHum1.KB221193           9789407 578 +  32995986 T
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375358           1019718 687 +   1462937 T
e allMis1.JH737798             80260 1661 +    106177 T
e falPer1.KB391107           2216004 600 -   3101084 T
e falChe1.KB398074           4263387 600 -   7151304 T
e macEug2.GL059506              6470 0 +     21939 I
e galGal4.chr1              24067632 542 + 195276750 T
e geoFor1.JH739914           5157724 543 -   7168866 T
e melGal1.chr1              24929349 4997 + 204065131 T
e anaPla1.KB742960            141378 0 +    531124 I
e amaVit1.KB277496              7625 3737 -     10329 T
e apaSpi1.KB929668           5961501 297 -  12308914 T
e cheMyd1.KB478633           2433836 723 +   6037886 T
e chrPic2.chr2              18523590 544 -  68452538 T
e pelSin1.JH211373           2650239 0 -   4257854 I
e melUnd1.JH556589           7680049 6397 -   7952740 T
e taeGut2.chr3              13879677 44 - 112617285 I
e dasNov3.JH567436           1026922 2299 -   2788317 I
e loxAfr3.scaffold_20       27613445 853 -  46401353 I
e pteAle1.KB030580          19407678 764 -  23789964 I
e rheMac3.chr8              61693383 6467 + 150158102 T
e macFas5.chr8              58367217 6565 + 146850525 T
e chlSab2.chr8              53287758 6649 + 139301422 T
e panTro4.chr8              55025844 24898 + 143986469 T

a score=3276.000000
s hg38.chr8_KI270814v1_alt     80448 1 +    141812 t
s ponAbe2.chr8              59050007 1 + 153482349 t
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48123579 1 + 100215132 t
i nomLeu3.chr16            C 0 C 0
s calJac3.chr14             99336233 1 + 108792865 T
i calJac3.chr14            C 0 I 1612
s saiBol1.JH378126          24002666 1 +  27210278 T
i saiBol1.JH378126         C 0 I 1293
s orcOrc1.KB316907          10836916 1 +  17242564 T
i orcOrc1.KB316907         C 0 I 879
s equCab2.chr15             84030630 1 +  91571448 T
i equCab2.chr15            C 0 I 700
s cerSim1.JH767782           6803985 1 -  14545593 T
i cerSim1.JH767782         C 0 I 1156
s triMan1.JH594629           9960925 1 +  24341844 t
i triMan1.JH594629         C 0 C 0
e musFur1.GL896914          13606356 958 -  19722643 I
e vicPac2.KB632437          19207284 406 -  22931326 I
e camFer1.KB017763           2801437 637 -   6207710 I
e odoRosDiv1.KB229025        3028421 612 +   4816872 I
e canFam3.chr17             57834713 628 -  64289059 I
e felCat8.chrA3            134101586 875 + 140925898 I
e ornAna1.Ultra479           3871811 7152 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637 0 -       895 I
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195       44258 5209 +     59083 T
e pseHum1.KB221193           9789407 578 +  32995986 T
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375358           1019718 687 +   1462937 T
e allMis1.JH737798             80260 1661 +    106177 T
e falPer1.KB391107           2216004 600 -   3101084 T
e falChe1.KB398074           4263387 600 -   7151304 T
e macEug2.GL059506              6470 0 +     21939 I
e galGal4.chr1              24067632 542 + 195276750 T
e geoFor1.JH739914           5157724 543 -   7168866 T
e melGal1.chr1              24929349 4997 + 204065131 T
e anaPla1.KB742960            141378 0 +    531124 I
e amaVit1.KB277496              7625 3737 -     10329 T
e apaSpi1.KB929668           5961501 297 -  12308914 T
e cheMyd1.KB478633           2433836 723 +   6037886 T
e chrPic2.chr2              18523590 544 -  68452538 T
e pelSin1.JH211373           2650239 0 -   4257854 I
e melUnd1.JH556589           7680049 6397 -   7952740 T
e taeGut2.chr3              13879677 44 - 112617285 I
e dasNov3.JH567436           1026922 2299 -   2788317 I
e loxAfr3.scaffold_20       27613445 853 -  46401353 I
e pteAle1.KB030580          19407678 764 -  23789964 I
e rheMac3.chr8              61693383 6467 + 150158102 T
e macFas5.chr8              58367217 6565 + 146850525 T
e otoGar3.GL873541          21182113 609 -  23169006 I
e chlSab2.chr8              53287758 6649 + 139301422 T
e panTro4.chr8              55025844 24898 + 143986469 T

a score=1272.000000
s hg38.chr8_KI270814v1_alt     80449 3 +    141812 ttt
s ponAbe2.chr8              59050008 3 + 153482349 ttt
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48123580 3 + 100215132 ttt
i nomLeu3.chr16            C 0 C 0
s triMan1.JH594629           9960926 3 +  24341844 ctt
i triMan1.JH594629         C 0 I 661
e musFur1.GL896914          13606356 958 -  19722643 I
e vicPac2.KB632437          19207284 406 -  22931326 I
e camFer1.KB017763           2801437 637 -   6207710 I
e odoRosDiv1.KB229025        3028421 612 +   4816872 I
e canFam3.chr17             57834713 628 -  64289059 I
e felCat8.chrA3            134101586 875 + 140925898 I
e ornAna1.Ultra479           3871811 7152 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637 0 -       895 I
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195       44258 5209 +     59083 T
e pseHum1.KB221193           9789407 578 +  32995986 T
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375358           1019718 687 +   1462937 T
e allMis1.JH737798             80260 1661 +    106177 T
e falPer1.KB391107           2216004 600 -   3101084 T
e falChe1.KB398074           4263387 600 -   7151304 T
e macEug2.GL059506              6470 0 +     21939 I
e galGal4.chr1              24067632 542 + 195276750 T
e geoFor1.JH739914           5157724 543 -   7168866 T
e melGal1.chr1              24929349 4997 + 204065131 T
e anaPla1.KB742960            141378 0 +    531124 I
e amaVit1.KB277496              7625 3737 -     10329 T
e apaSpi1.KB929668           5961501 297 -  12308914 T
e cheMyd1.KB478633           2433836 723 +   6037886 T
e chrPic2.chr2              18523590 544 -  68452538 T
e pelSin1.JH211373           2650239 0 -   4257854 I
e calJac3.chr14             99336234 1612 + 108792865 I
e melUnd1.JH556589           7680049 6397 -   7952740 T
e taeGut2.chr3              13879677 44 - 112617285 I
e dasNov3.JH567436           1026922 2299 -   2788317 I
e equCab2.chr15             84030631 700 +  91571448 I
e loxAfr3.scaffold_20       27613445 853 -  46401353 I
e pteAle1.KB030580          19407678 764 -  23789964 I
e cerSim1.JH767782           6803986 1156 -  14545593 I
e orcOrc1.KB316907          10836917 879 +  17242564 I
e rheMac3.chr8              61693383 6467 + 150158102 T
e macFas5.chr8              58367217 6565 + 146850525 T
e otoGar3.GL873541          21182113 609 -  23169006 I
e saiBol1.JH378126          24002667 1293 +  27210278 I
e chlSab2.chr8              53287758 6649 + 139301422 T
e panTro4.chr8              55025844 24898 + 143986469 T

a score=67388.000000
s hg38.chr8_KI270814v1_alt     80452 303 +    141812 tttttttttttttttttttttttttgttgagacggagtctcactctgttccccagactggagtgcagtggtgccatctcggctcactgcaagctccgcctcctgggttcatgccattctcctgactcagcctcccgagtagctgggaccacaggcgcccgccaccatgcccggctaatttttttgtatttttagtagagacggggtttcaccgtgttagccaggatggtctctatctcctgacctcgtgatccgcccacctcggcctcccaaagtgctgggattacaggcgtgagccaccgtg
s ponAbe2.chr8              59050011 295 + 153482349 ttttttttttttttttgtctt-------gagatggagtctcactctgtcccccagactggagtgcagtggtgccatctccgctcactgcaagctctgcctcccgggttcatgccattctcctgcctcagcctcccgagtagttgggactacagg-gtgcgccaccatgcccagctaatttttttgtatttttagtagagacggggtttcaccatgttagccaggatggtctcgatctcctgacctcgtgatccgcccacctcggcctcccgaggtgctggaattacaggcgtgagccactgca
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48123583 287 + 100215132 tttttttttttt----------------gagatggagtcttgctctgtcccctagactggagtgcagtggtgccatgttggctcactgcaagctccgcctcccaggttcatgccattctcccgcttcagcctcctgagtagctgggcccacaggtgccctccactatgcctggctaatttttttgtatttttagtagagactgggcttcaccatgttagccaggatgatctcaatctgctgacctcatgatctgcccacctcatcctccccaagtgctgggattacaggcgtgagccaccgtg
i nomLeu3.chr16            C 0 C 0
e musFur1.GL896914          13606356 958 -  19722643 I
e vicPac2.KB632437          19207284 406 -  22931326 I
e camFer1.KB017763           2801437 637 -   6207710 I
e odoRosDiv1.KB229025        3028421 612 +   4816872 I
e canFam3.chr17             57834713 628 -  64289059 I
e felCat8.chrA3            134101586 875 + 140925898 I
e ornAna1.Ultra479           3871811 7152 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637   0 -       895 I
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195       44258 5209 +     59083 T
e pseHum1.KB221193           9789407 578 +  32995986 T
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375358           1019718 687 +   1462937 T
e allMis1.JH737798             80260 1661 +    106177 T
e falPer1.KB391107           2216004 600 -   3101084 T
e falChe1.KB398074           4263387 600 -   7151304 T
e macEug2.GL059506              6470   0 +     21939 I
e galGal4.chr1              24067632 542 + 195276750 T
e geoFor1.JH739914           5157724 543 -   7168866 T
e melGal1.chr1              24929349 4997 + 204065131 T
e anaPla1.KB742960            141378   0 +    531124 I
e amaVit1.KB277496              7625 3737 -     10329 T
e apaSpi1.KB929668           5961501 297 -  12308914 T
e cheMyd1.KB478633           2433836 723 +   6037886 T
e chrPic2.chr2              18523590 544 -  68452538 T
e pelSin1.JH211373           2650239   0 -   4257854 I
e calJac3.chr14             99336234 1612 + 108792865 I
e melUnd1.JH556589           7680049 6397 -   7952740 T
e taeGut2.chr3              13879677  44 - 112617285 I
e dasNov3.JH567436           1026922 2299 -   2788317 I
e equCab2.chr15             84030631 700 +  91571448 I
e triMan1.JH594629           9960929 661 +  24341844 I
e loxAfr3.scaffold_20       27613445 853 -  46401353 I
e pteAle1.KB030580          19407678 764 -  23789964 I
e cerSim1.JH767782           6803986 1156 -  14545593 I
e orcOrc1.KB316907          10836917 879 +  17242564 I
e rheMac3.chr8              61693383 6467 + 150158102 T
e macFas5.chr8              58367217 6565 + 146850525 T
e otoGar3.GL873541          21182113 609 -  23169006 I
e saiBol1.JH378126          24002667 1293 +  27210278 I
e chlSab2.chr8              53287758 6649 + 139301422 T
e panTro4.chr8              55025844 24898 + 143986469 T

a score=-42.000000
s hg38.chr8_KI270814v1_alt     80755 1 +    141812 c
s ponAbe2.chr8              59050306 1 + 153482349 a
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48123870 1 + 100215132 c
i nomLeu3.chr16            C 0 C 0
s camFer1.KB017763           2802074 1 -   6207710 C
i camFer1.KB017763         I 637 C 0
e musFur1.GL896914          13606356 958 -  19722643 I
e vicPac2.KB632437          19207284 406 -  22931326 I
e odoRosDiv1.KB229025        3028421 612 +   4816872 I
e canFam3.chr17             57834713 628 -  64289059 I
e felCat8.chrA3            134101586 875 + 140925898 I
e ornAna1.Ultra479           3871811 7152 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637 0 -       895 I
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195       44258 5209 +     59083 T
e pseHum1.KB221193           9789407 578 +  32995986 T
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375358           1019718 687 +   1462937 T
e allMis1.JH737798             80260 1661 +    106177 T
e falPer1.KB391107           2216004 600 -   3101084 T
e falChe1.KB398074           4263387 600 -   7151304 T
e macEug2.GL059506              6470 0 +     21939 I
e galGal4.chr1              24067632 542 + 195276750 T
e geoFor1.JH739914           5157724 543 -   7168866 T
e melGal1.chr1              24929349 4997 + 204065131 T
e anaPla1.KB742960            141378 0 +    531124 I
e amaVit1.KB277496              7625 3737 -     10329 T
e apaSpi1.KB929668           5961501 297 -  12308914 T
e cheMyd1.KB478633           2433836 723 +   6037886 T
e chrPic2.chr2              18523590 544 -  68452538 T
e pelSin1.JH211373           2650239 0 -   4257854 I
e calJac3.chr14             99336234 1612 + 108792865 I
e melUnd1.JH556589           7680049 6397 -   7952740 T
e taeGut2.chr3              13879677 44 - 112617285 I
e dasNov3.JH567436           1026922 2299 -   2788317 I
e equCab2.chr15             84030631 700 +  91571448 I
e triMan1.JH594629           9960929 661 +  24341844 I
e loxAfr3.scaffold_20       27613445 853 -  46401353 I
e pteAle1.KB030580          19407678 764 -  23789964 I
e cerSim1.JH767782           6803986 1156 -  14545593 I
e orcOrc1.KB316907          10836917 879 +  17242564 I
e rheMac3.chr8              61693383 6467 + 150158102 T
e macFas5.chr8              58367217 6565 + 146850525 T
e otoGar3.GL873541          21182113 609 -  23169006 I
e saiBol1.JH378126          24002667 1293 +  27210278 I
e chlSab2.chr8              53287758 6649 + 139301422 T
e panTro4.chr8              55025844 24898 + 143986469 T

a score=2387.000000
s hg38.chr8_KI270814v1_alt     80756 7 +    141812 ccagccC
s ponAbe2.chr8              59050307 7 + 153482349 ccagccC
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48123871 7 + 100215132 gcagccC
i nomLeu3.chr16            C 0 C 0
s vicPac2.KB632437          19207690 7 -  22931326 CCTATCT
i vicPac2.KB632437         I 406 C 0
s camFer1.KB017763           2802075 7 -   6207710 TCAATCT
i camFer1.KB017763         C 0 C 0
e musFur1.GL896914          13606356 958 -  19722643 I
e odoRosDiv1.KB229025        3028421 612 +   4816872 I
e canFam3.chr17             57834713 628 -  64289059 I
e felCat8.chrA3            134101586 875 + 140925898 I
e ornAna1.Ultra479           3871811 7152 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637 0 -       895 I
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195       44258 5209 +     59083 T
e pseHum1.KB221193           9789407 578 +  32995986 T
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375358           1019718 687 +   1462937 T
e allMis1.JH737798             80260 1661 +    106177 T
e falPer1.KB391107           2216004 600 -   3101084 T
e falChe1.KB398074           4263387 600 -   7151304 T
e macEug2.GL059506              6470 0 +     21939 I
e galGal4.chr1              24067632 542 + 195276750 T
e geoFor1.JH739914           5157724 543 -   7168866 T
e melGal1.chr1              24929349 4997 + 204065131 T
e anaPla1.KB742960            141378 0 +    531124 I
e amaVit1.KB277496              7625 3737 -     10329 T
e apaSpi1.KB929668           5961501 297 -  12308914 T
e cheMyd1.KB478633           2433836 723 +   6037886 T
e chrPic2.chr2              18523590 544 -  68452538 T
e pelSin1.JH211373           2650239 0 -   4257854 I
e calJac3.chr14             99336234 1612 + 108792865 I
e melUnd1.JH556589           7680049 6397 -   7952740 T
e taeGut2.chr3              13879677 44 - 112617285 I
e dasNov3.JH567436           1026922 2299 -   2788317 I
e equCab2.chr15             84030631 700 +  91571448 I
e triMan1.JH594629           9960929 661 +  24341844 I
e loxAfr3.scaffold_20       27613445 853 -  46401353 I
e pteAle1.KB030580          19407678 764 -  23789964 I
e cerSim1.JH767782           6803986 1156 -  14545593 I
e orcOrc1.KB316907          10836917 879 +  17242564 I
e rheMac3.chr8              61693383 6467 + 150158102 T
e macFas5.chr8              58367217 6565 + 146850525 T
e otoGar3.GL873541          21182113 609 -  23169006 I
e saiBol1.JH378126          24002667 1293 +  27210278 I
e chlSab2.chr8              53287758 6649 + 139301422 T
e panTro4.chr8              55025844 24898 + 143986469 T

a score=5369.000000
s hg38.chr8_KI270814v1_alt     80763 5 +    141812 CTTCG
s ponAbe2.chr8              59050314 5 + 153482349 CTTCA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48123878 5 + 100215132 CTTCG
i nomLeu3.chr16            C 0 C 0
s otoGar3.GL873541          21182722 5 -  23169006 CTTTG
i otoGar3.GL873541         I 609 C 0
s vicPac2.KB632437          19207697 5 -  22931326 CTTTG
i vicPac2.KB632437         C 0 C 0
s camFer1.KB017763           2802082 5 -   6207710 CTTTG
i camFer1.KB017763         C 0 C 0
e musFur1.GL896914          13606356 958 -  19722643 I
e odoRosDiv1.KB229025        3028421 612 +   4816872 I
e canFam3.chr17             57834713 628 -  64289059 I
e felCat8.chrA3            134101586 875 + 140925898 I
e ornAna1.Ultra479           3871811 7152 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637 0 -       895 I
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195       44258 5209 +     59083 T
e pseHum1.KB221193           9789407 578 +  32995986 T
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375358           1019718 687 +   1462937 T
e allMis1.JH737798             80260 1661 +    106177 T
e falPer1.KB391107           2216004 600 -   3101084 T
e falChe1.KB398074           4263387 600 -   7151304 T
e macEug2.GL059506              6470 0 +     21939 I
e galGal4.chr1              24067632 542 + 195276750 T
e geoFor1.JH739914           5157724 543 -   7168866 T
e melGal1.chr1              24929349 4997 + 204065131 T
e anaPla1.KB742960            141378 0 +    531124 I
e amaVit1.KB277496              7625 3737 -     10329 T
e apaSpi1.KB929668           5961501 297 -  12308914 T
e cheMyd1.KB478633           2433836 723 +   6037886 T
e chrPic2.chr2              18523590 544 -  68452538 T
e pelSin1.JH211373           2650239 0 -   4257854 I
e calJac3.chr14             99336234 1612 + 108792865 I
e melUnd1.JH556589           7680049 6397 -   7952740 T
e taeGut2.chr3              13879677 44 - 112617285 I
e dasNov3.JH567436           1026922 2299 -   2788317 I
e equCab2.chr15             84030631 700 +  91571448 I
e triMan1.JH594629           9960929 661 +  24341844 I
e loxAfr3.scaffold_20       27613445 853 -  46401353 I
e pteAle1.KB030580          19407678 764 -  23789964 I
e cerSim1.JH767782           6803986 1156 -  14545593 I
e orcOrc1.KB316907          10836917 879 +  17242564 I
e rheMac3.chr8              61693383 6467 + 150158102 T
e macFas5.chr8              58367217 6565 + 146850525 T
e saiBol1.JH378126          24002667 1293 +  27210278 I
e chlSab2.chr8              53287758 6649 + 139301422 T
e panTro4.chr8              55025844 24898 + 143986469 T

a score=4095.000000
s hg38.chr8_KI270814v1_alt     80768 1 +    141812 A
s ponAbe2.chr8              59050319 1 + 153482349 A
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48123883 1 + 100215132 A
i nomLeu3.chr16            C 0 C 0
s otoGar3.GL873541          21182727 1 -  23169006 A
i otoGar3.GL873541         C 0 C 0
s vicPac2.KB632437          19207702 1 -  22931326 A
i vicPac2.KB632437         C 0 C 0
s camFer1.KB017763           2802087 1 -   6207710 A
i camFer1.KB017763         C 0 C 0
s felCat8.chrA3            134102461 1 + 140925898 A
i felCat8.chrA3            I 875 C 0
s canFam3.chr17             57835341 1 -  64289059 A
i canFam3.chr17            I 628 C 0
s odoRosDiv1.KB229025        3029033 1 +   4816872 A
i odoRosDiv1.KB229025      I 612 C 0
s triMan1.JH594629           9961590 1 +  24341844 A
i triMan1.JH594629         I 661 C 0
e musFur1.GL896914          13606356 958 -  19722643 I
e ornAna1.Ultra479           3871811 7152 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637 0 -       895 I
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195       44258 5209 +     59083 T
e pseHum1.KB221193           9789407 578 +  32995986 T
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375358           1019718 687 +   1462937 T
e allMis1.JH737798             80260 1661 +    106177 T
e falPer1.KB391107           2216004 600 -   3101084 T
e falChe1.KB398074           4263387 600 -   7151304 T
e macEug2.GL059506              6470 0 +     21939 I
e galGal4.chr1              24067632 542 + 195276750 T
e geoFor1.JH739914           5157724 543 -   7168866 T
e melGal1.chr1              24929349 4997 + 204065131 T
e anaPla1.KB742960            141378 0 +    531124 I
e amaVit1.KB277496              7625 3737 -     10329 T
e apaSpi1.KB929668           5961501 297 -  12308914 T
e cheMyd1.KB478633           2433836 723 +   6037886 T
e chrPic2.chr2              18523590 544 -  68452538 T
e pelSin1.JH211373           2650239 0 -   4257854 I
e calJac3.chr14             99336234 1612 + 108792865 I
e melUnd1.JH556589           7680049 6397 -   7952740 T
e taeGut2.chr3              13879677 44 - 112617285 I
e dasNov3.JH567436           1026922 2299 -   2788317 I
e equCab2.chr15             84030631 700 +  91571448 I
e loxAfr3.scaffold_20       27613445 853 -  46401353 I
e pteAle1.KB030580          19407678 764 -  23789964 I
e cerSim1.JH767782           6803986 1156 -  14545593 I
e orcOrc1.KB316907          10836917 879 +  17242564 I
e rheMac3.chr8              61693383 6467 + 150158102 T
e macFas5.chr8              58367217 6565 + 146850525 T
e saiBol1.JH378126          24002667 1293 +  27210278 I
e chlSab2.chr8              53287758 6649 + 139301422 T
e panTro4.chr8              55025844 24898 + 143986469 T

a score=5500.000000
s hg38.chr8_KI270814v1_alt     80769 1 +    141812 G
s ponAbe2.chr8              59050320 1 + 153482349 G
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48123884 1 + 100215132 G
i nomLeu3.chr16            C 0 C 0
s otoGar3.GL873541          21182728 1 -  23169006 G
i otoGar3.GL873541         C 0 C 0
s vicPac2.KB632437          19207703 1 -  22931326 G
i vicPac2.KB632437         C 0 I 5
s camFer1.KB017763           2802088 1 -   6207710 G
i camFer1.KB017763         C 0 I 5
s felCat8.chrA3            134102462 1 + 140925898 G
i felCat8.chrA3            C 0 C 0
s canFam3.chr17             57835342 1 -  64289059 G
i canFam3.chr17            C 0 C 0
s odoRosDiv1.KB229025        3029034 1 +   4816872 G
i odoRosDiv1.KB229025      C 0 C 0
s loxAfr3.scaffold_20       27614298 1 -  46401353 G
i loxAfr3.scaffold_20      I 853 C 0
s triMan1.JH594629           9961591 1 +  24341844 G
i triMan1.JH594629         C 0 C 0
e musFur1.GL896914          13606356 958 -  19722643 I
e ornAna1.Ultra479           3871811 7152 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637 0 -       895 I
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195       44258 5209 +     59083 T
e pseHum1.KB221193           9789407 578 +  32995986 T
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375358           1019718 687 +   1462937 T
e allMis1.JH737798             80260 1661 +    106177 T
e falPer1.KB391107           2216004 600 -   3101084 T
e falChe1.KB398074           4263387 600 -   7151304 T
e macEug2.GL059506              6470 0 +     21939 I
e galGal4.chr1              24067632 542 + 195276750 T
e geoFor1.JH739914           5157724 543 -   7168866 T
e melGal1.chr1              24929349 4997 + 204065131 T
e anaPla1.KB742960            141378 0 +    531124 I
e amaVit1.KB277496              7625 3737 -     10329 T
e apaSpi1.KB929668           5961501 297 -  12308914 T
e cheMyd1.KB478633           2433836 723 +   6037886 T
e chrPic2.chr2              18523590 544 -  68452538 T
e pelSin1.JH211373           2650239 0 -   4257854 I
e calJac3.chr14             99336234 1612 + 108792865 I
e melUnd1.JH556589           7680049 6397 -   7952740 T
e taeGut2.chr3              13879677 44 - 112617285 I
e dasNov3.JH567436           1026922 2299 -   2788317 I
e equCab2.chr15             84030631 700 +  91571448 I
e pteAle1.KB030580          19407678 764 -  23789964 I
e cerSim1.JH767782           6803986 1156 -  14545593 I
e orcOrc1.KB316907          10836917 879 +  17242564 I
e rheMac3.chr8              61693383 6467 + 150158102 T
e macFas5.chr8              58367217 6565 + 146850525 T
e saiBol1.JH378126          24002667 1293 +  27210278 I
e chlSab2.chr8              53287758 6649 + 139301422 T
e panTro4.chr8              55025844 24898 + 143986469 T

a score=10670.000000
s hg38.chr8_KI270814v1_alt     80770 2 +    141812 TT
s ponAbe2.chr8              59050321 2 + 153482349 TT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48123885 2 + 100215132 TT
i nomLeu3.chr16            C 0 C 0
s otoGar3.GL873541          21182729 2 -  23169006 TT
i otoGar3.GL873541         C 0 I 6
s vicPac2.KB632437          19207709 2 -  22931326 TT
i vicPac2.KB632437         I 5 C 0
s camFer1.KB017763           2802094 2 -   6207710 TT
i camFer1.KB017763         I 5 C 0
s felCat8.chrA3            134102463 2 + 140925898 CT
i felCat8.chrA3            C 0 C 0
s canFam3.chr17             57835343 2 -  64289059 TT
i canFam3.chr17            C 0 C 0
s odoRosDiv1.KB229025        3029035 2 +   4816872 TT
i odoRosDiv1.KB229025      C 0 C 0
s pteAle1.KB030580          19408442 2 -  23789964 TT
i pteAle1.KB030580         I 764 C 0
s loxAfr3.scaffold_20       27614299 2 -  46401353 TT
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629           9961592 2 +  24341844 TT
i triMan1.JH594629         C 0 C 0
e musFur1.GL896914          13606356 958 -  19722643 I
e ornAna1.Ultra479           3871811 7152 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637 0 -       895 I
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195       44258 5209 +     59083 T
e pseHum1.KB221193           9789407 578 +  32995986 T
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375358           1019718 687 +   1462937 T
e allMis1.JH737798             80260 1661 +    106177 T
e falPer1.KB391107           2216004 600 -   3101084 T
e falChe1.KB398074           4263387 600 -   7151304 T
e macEug2.GL059506              6470 0 +     21939 I
e galGal4.chr1              24067632 542 + 195276750 T
e geoFor1.JH739914           5157724 543 -   7168866 T
e melGal1.chr1              24929349 4997 + 204065131 T
e anaPla1.KB742960            141378 0 +    531124 I
e amaVit1.KB277496              7625 3737 -     10329 T
e apaSpi1.KB929668           5961501 297 -  12308914 T
e cheMyd1.KB478633           2433836 723 +   6037886 T
e chrPic2.chr2              18523590 544 -  68452538 T
e pelSin1.JH211373           2650239 0 -   4257854 I
e calJac3.chr14             99336234 1612 + 108792865 I
e melUnd1.JH556589           7680049 6397 -   7952740 T
e taeGut2.chr3              13879677 44 - 112617285 I
e dasNov3.JH567436           1026922 2299 -   2788317 I
e equCab2.chr15             84030631 700 +  91571448 I
e cerSim1.JH767782           6803986 1156 -  14545593 I
e orcOrc1.KB316907          10836917 879 +  17242564 I
e rheMac3.chr8              61693383 6467 + 150158102 T
e macFas5.chr8              58367217 6565 + 146850525 T
e saiBol1.JH378126          24002667 1293 +  27210278 I
e chlSab2.chr8              53287758 6649 + 139301422 T
e panTro4.chr8              55025844 24898 + 143986469 T

a score=49236.000000
s hg38.chr8_KI270814v1_alt     80772 8 +    141812 AACTTTCT
s ponAbe2.chr8              59050323 8 + 153482349 AACTTTCT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48123887 8 + 100215132 AACTTTCT
i nomLeu3.chr16            C 0 C 0
s otoGar3.GL873541          21182737 8 -  23169006 AACTTTCT
i otoGar3.GL873541         I 6 C 0
s vicPac2.KB632437          19207711 8 -  22931326 AACTTTCT
i vicPac2.KB632437         C 0 C 0
s camFer1.KB017763           2802096 8 -   6207710 AACTTTCT
i camFer1.KB017763         C 0 C 0
s equCab2.chr15             84031331 8 +  91571448 aactttct
i equCab2.chr15            I 700 C 0
s felCat8.chrA3            134102465 8 + 140925898 GACTTTCT
i felCat8.chrA3            C 0 C 0
s canFam3.chr17             57835345 8 -  64289059 AACTTTCT
i canFam3.chr17            C 0 C 0
s odoRosDiv1.KB229025        3029037 8 +   4816872 AACTTTCT
i odoRosDiv1.KB229025      C 0 C 0
s pteAle1.KB030580          19408444 8 -  23789964 ACCTTTct
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20       27614301 8 -  46401353 AACTTACT
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629           9961594 8 +  24341844 AACTGTCT
i triMan1.JH594629         C 0 C 0
e musFur1.GL896914          13606356 958 -  19722643 I
e ornAna1.Ultra479           3871811 7152 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637 0 -       895 I
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195       44258 5209 +     59083 T
e pseHum1.KB221193           9789407 578 +  32995986 T
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375358           1019718 687 +   1462937 T
e allMis1.JH737798             80260 1661 +    106177 T
e falPer1.KB391107           2216004 600 -   3101084 T
e falChe1.KB398074           4263387 600 -   7151304 T
e macEug2.GL059506              6470 0 +     21939 I
e galGal4.chr1              24067632 542 + 195276750 T
e geoFor1.JH739914           5157724 543 -   7168866 T
e melGal1.chr1              24929349 4997 + 204065131 T
e anaPla1.KB742960            141378 0 +    531124 I
e amaVit1.KB277496              7625 3737 -     10329 T
e apaSpi1.KB929668           5961501 297 -  12308914 T
e cheMyd1.KB478633           2433836 723 +   6037886 T
e chrPic2.chr2              18523590 544 -  68452538 T
e pelSin1.JH211373           2650239 0 -   4257854 I
e calJac3.chr14             99336234 1612 + 108792865 I
e melUnd1.JH556589           7680049 6397 -   7952740 T
e taeGut2.chr3              13879677 44 - 112617285 I
e dasNov3.JH567436           1026922 2299 -   2788317 I
e cerSim1.JH767782           6803986 1156 -  14545593 I
e orcOrc1.KB316907          10836917 879 +  17242564 I
e rheMac3.chr8              61693383 6467 + 150158102 T
e macFas5.chr8              58367217 6565 + 146850525 T
e saiBol1.JH378126          24002667 1293 +  27210278 I
e chlSab2.chr8              53287758 6649 + 139301422 T
e panTro4.chr8              55025844 24898 + 143986469 T

a score=710919.000000
s hg38.chr8_KI270814v1_alt     80780 219 +    141812 aaat---attcacttgatgaaaaacaa-agcagtaaaggaggaatagaagaacaaaaatcacatgaaata-taaaa-----agt--------aaa----------taaattcaatca-tctcaacagtaacattaaatgtgcatggattaaacaatgcaatctaaaggtagagattgt-----cagactg-ataagaa--aac-------catgatccaactg----tattatttataagag--acacactttagattcaaagatatac
s ponAbe2.chr8              59050331 224 + 153482349 aaat---attcacttgatgaaaaacaa-agcactaaaggaggaatagaagaagaaaaatcacatgaaata-taaaa-----agt--------aaaacaa-----ataaattcagtca-tctcaacagtaacattaaatgtgcatggattaaacaatgcaatctaaaggtagagattgt-----cagactg-ataagaa--aac-------catgatccaactg----tattatttataagag--acacacttgagattcaaagatatac
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48123895 224 + 100215132 aaat---actcacttgatgaaaaacaa-agcagtaaaggaggaaaagaagaacaaaaatcacatgaaata-taaaa-----agt--------aaaacaa-----ataaatttattca-tctcaacagtaacattaaacatgcatggactaaacaatgcaatctaaaggtagagattgt-----cagactg-ataagaa--aac-------catgatccaactg----tgttatttataagag--atacactttagattcaaagatatac
i nomLeu3.chr16            C 0 C 0
s otoGar3.GL873541          21182745 220 -  23169006 aaat---atacacttcatgagaaacaa-agcagcaaaggaagaacagaggaagaaaagacacaagacata-aaaac-----agc--------aggagta-----gaacagtccctct-gatcaacag------tgagcgtgaatgcagtaaacaaggccagcaaaaggcag-gacggt-----caaactacattagga--aaa-------catgatcccagtgtgtatgttgtctataaaag--acacattttagatt--aagatacac
i otoGar3.GL873541         C 0 C 0
s vicPac2.KB632437          19207719 239 -  22931326 aaat---atccatgtaatgaaaaacaa-agcagcaaaggagggacagaggaacaaaaaagacgtaagaca-tgaaa-----aaaac---accaaaagaaaagacataaatccaacca-catcaatactaacaaccaatgtgga-tgatttaacaatcccatcaaaaggcagaggttgt-----cagactagatttaaa--aaa------acctgacccaaata--cagattgtctacaggaaatacacactttagatccaaagatacac
i vicPac2.KB632437         C 0 C 0
s camFer1.KB017763           2802104 244 -   6207710 aaat---attcatgtaatgaaaaacaa-agcagcaaaggagggacagaggaataaaaaagacataagacattaaaa-----aaaac---accacaagaacagacataaatccaacca-catcaacagtaacaacaaatgtgga-tgatttaacaatcccatcaaaaggcagaggttgt-----cagactagattaaaa--aaaa--aataaccgacccaaata--cagattgtctacaggaaatatacactttagatccaaagatacac
i camFer1.KB017763         C 0 C 0
s orcOrc1.KB316907          10837796 230 +  17242564 aaaA---AGGcacataatgaaaaacaa-agcagcaaaggagggacagaggaacaaaaaagacataagaaa-caaaa-----aag-------taaaagagcagatacaaacccaacca-catcaacagtaacatc--atgtgaa-tgactaaacaaccccatcagaaggcagagactgt-----cagactgga-taaaa--aaa------acatgatccaaata--tagattgtctacaggaa--acacactgtagatccaaagatacac
i orcOrc1.KB316907         I 879 C 0
s equCab2.chr15             84031339 224 +  91571448 aaat---tttcacttaatgaaaaccaa-agcagtaaaggaacaacagaggaacaaaaaa---atgagaca-taaaa-gacaaga--------aaaccagcagacgtaaatctaacca-catcgatattaacaccaaatgtgaatggattaaacaatcctaccaaaaggcagagactggattaaaaaacatgatccaaat-ata------------------------gactatctatagcaa--acacattttagattcaaagatagac
i equCab2.chr15            C 0 C 0
s felCat8.chrA3            134102473 227 + 140925898 aaat---attcacttaatggaaaaaaaaagtagcaaaggaagaacaaaagaacaaagaagacatgagaca-taaaacaacaaaaaa---agtaagacagtagacataaacccaacca-catcaatagcaacatc-aatgtgaaaggattaaacaatcccatcaaaaggcagagactgt-----cagactggatttaaa--aca------------------------tgctgtctacaggaa--acacactttagattcacacatacac
i felCat8.chrA3            C 0 I 57
s canFam3.chr17             57835353 218 -  64289059 aaat---atccacttaatgaaaaaag-----agcaaaggaagaacaaaggaataaagaagacatgagata-taaaa-aacaaaaa-------aagacagcagacataaatccaacca-catcaatagtaacatcaaatgtgaatggattaaacaatcccatcaaaaggctgagtttgt-----cagactagattttaa--aaa------------------------cactgtctgccggaa--acacgctttagagtcatagaaacac
i canFam3.chr17            C 0 C 0
s odoRosDiv1.KB229025        3029045 216 +   4816872 aaat---attcacttaatgaaaaaaaa---tagcaaaggaagaacaaaggaacaaagaagacatgagaca-taaa-----aaaaa-------aagacagcagacataaatccaacca-catcaatagcaacatcaaatatgaatggattaaacaatcccatcaaaaggcagagattgt-----cagacgagatttaaa--aaa------------------------cactgtctacaggaa--acacactttagattcacagatacac
i odoRosDiv1.KB229025      C 0 C 0
s pteAle1.KB030580          19408452 218 -  23789964 aaatagcattcgcttaatgaaaaacaa-agcagcaaagggggaagaaagtcacaaaaaagacataaaaca-aaaaa---caaaagt------aaaaccgcagatgtaaatccaacta-catcaacagtgacatcaaatgtgaa-agattaaacagtctcatcgaaaggcagagactgg-----ataaaaaaatgtgaatgaac------------------------tgatgtctacaggaa--acacactttagattcaga-------
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20       27614309 234 -  46401353 AAGT---GTtcacttaatgcaaagcac---------aggccgaactgaggaacaaaaaagacacgaggca-tataa-----aaacaaaaaataaaatagaagatgtaaacccaactattatcaacaataacattaaatgcaaataggttaaacaatctaatcaaaaggcagata--gt-----tatactggattttaa--aaaaacaat----gatccaactc--tatgctgtctacagaag--acacacttgggattaaaagataaaa
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629           9961602 231 +  24341844 aaac---gttcacttaatgcaaagcac---------aggcagaaaagaggaacaaaaaagacgtgaggcg-tagaa-----aaacaaaaaataaaatacgagatgtaaatccaactattaccaacaat-------aatgtgaatagattaaacgatctaatcaaaagacaaata--gt-----catactggattcaaa--aaaaaaaatacacgatccaactc--tatgctgtctacagaag--acacgttttagattaaaagataaaa
i triMan1.JH594629         C 0 C 0
e musFur1.GL896914          13606356 958 -  19722643 I
e ornAna1.Ultra479           3871811 7152 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637   0 -       895 I
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195       44258 5209 +     59083 T
e pseHum1.KB221193           9789407 578 +  32995986 T
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375358           1019718 687 +   1462937 T
e allMis1.JH737798             80260 1661 +    106177 T
e falPer1.KB391107           2216004 600 -   3101084 T
e falChe1.KB398074           4263387 600 -   7151304 T
e macEug2.GL059506              6470   0 +     21939 I
e galGal4.chr1              24067632 542 + 195276750 T
e geoFor1.JH739914           5157724 543 -   7168866 T
e melGal1.chr1              24929349 4997 + 204065131 T
e anaPla1.KB742960            141378   0 +    531124 I
e amaVit1.KB277496              7625 3737 -     10329 T
e apaSpi1.KB929668           5961501 297 -  12308914 T
e cheMyd1.KB478633           2433836 723 +   6037886 T
e chrPic2.chr2              18523590 544 -  68452538 T
e pelSin1.JH211373           2650239   0 -   4257854 I
e calJac3.chr14             99336234 1612 + 108792865 I
e melUnd1.JH556589           7680049 6397 -   7952740 T
e taeGut2.chr3              13879677  44 - 112617285 I
e dasNov3.JH567436           1026922 2299 -   2788317 I
e cerSim1.JH767782           6803986 1156 -  14545593 I
e rheMac3.chr8              61693383 6467 + 150158102 T
e macFas5.chr8              58367217 6565 + 146850525 T
e saiBol1.JH378126          24002667 1293 +  27210278 I
e chlSab2.chr8              53287758 6649 + 139301422 T
e panTro4.chr8              55025844 24898 + 143986469 T

a score=44613.000000
s hg38.chr8_KI270814v1_alt     80999 17 +    141812 atggactgaata--taaaa
s ponAbe2.chr8              59050555 17 + 153482349 atggactgaata--taaaa
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48124119 17 + 100215132 atggactgaata--taaaa
i nomLeu3.chr16            C 0 C 0
s otoGar3.GL873541          21182965 17 -  23169006 ataggttgaatg--taaaa
i otoGar3.GL873541         C 0 C 0
s vicPac2.KB632437          19207958 17 -  22931326 aaaggctgaaag--taaaa
i vicPac2.KB632437         C 0 C 0
s camFer1.KB017763           2802348 16 -   6207710 ataggctgaaag---aaaa
i camFer1.KB017763         C 0 C 0
s orcOrc1.KB316907          10838026 17 +  17242564 ataagttgaaag--taaaa
i orcOrc1.KB316907         C 0 C 0
s equCab2.chr15             84031563 17 +  91571448 acaggttgaaag--taaaa
i equCab2.chr15            C 0 I 47
s canFam3.chr17             57835571 17 -  64289059 acaggttgaaaa--agaaa
i canFam3.chr17            C 0 C 0
s odoRosDiv1.KB229025        3029261 17 +   4816872 acaggttgaaaa--agaaa
i odoRosDiv1.KB229025      C 0 I 4
s loxAfr3.scaffold_20       27614543 19 -  46401353 ataaagtaaaaggatgaaa
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629           9961833 19 +  24341844 ataaagtaaaaagatgaaa
i triMan1.JH594629         C 0 C 0
e musFur1.GL896914          13606356 958 -  19722643 I
e felCat8.chrA3            134102700 57 + 140925898 I
e ornAna1.Ultra479           3871811 7152 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637  0 -       895 I
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195       44258 5209 +     59083 T
e pseHum1.KB221193           9789407 578 +  32995986 T
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375358           1019718 687 +   1462937 T
e allMis1.JH737798             80260 1661 +    106177 T
e falPer1.KB391107           2216004 600 -   3101084 T
e falChe1.KB398074           4263387 600 -   7151304 T
e macEug2.GL059506              6470  0 +     21939 I
e galGal4.chr1              24067632 542 + 195276750 T
e geoFor1.JH739914           5157724 543 -   7168866 T
e melGal1.chr1              24929349 4997 + 204065131 T
e anaPla1.KB742960            141378  0 +    531124 I
e amaVit1.KB277496              7625 3737 -     10329 T
e apaSpi1.KB929668           5961501 297 -  12308914 T
e cheMyd1.KB478633           2433836 723 +   6037886 T
e chrPic2.chr2              18523590 544 -  68452538 T
e pelSin1.JH211373           2650239  0 -   4257854 I
e calJac3.chr14             99336234 1612 + 108792865 I
e melUnd1.JH556589           7680049 6397 -   7952740 T
e taeGut2.chr3              13879677 44 - 112617285 I
e dasNov3.JH567436           1026922 2299 -   2788317 I
e pteAle1.KB030580          19408670  0 -  23789964 C
e cerSim1.JH767782           6803986 1156 -  14545593 I
e rheMac3.chr8              61693383 6467 + 150158102 T
e macFas5.chr8              58367217 6565 + 146850525 T
e saiBol1.JH378126          24002667 1293 +  27210278 I
e chlSab2.chr8              53287758 6649 + 139301422 T
e panTro4.chr8              55025844 24898 + 143986469 T

a score=-10240.000000
s hg38.chr8_KI270814v1_alt     81016  2 +    141812 --gg--------
s ponAbe2.chr8              59050572  2 + 153482349 --ac--------
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48124136  2 + 100215132 --gg--------
i nomLeu3.chr16            C 0 C 0
s otoGar3.GL873541          21182982  2 -  23169006 --gg--------
i otoGar3.GL873541         C 0 I 18
s vicPac2.KB632437          19207975  2 -  22931326 --gg--------
i vicPac2.KB632437         C 0 I 30
s camFer1.KB017763           2802364  2 -   6207710 --gg--------
i camFer1.KB017763         C 0 I 1
s orcOrc1.KB316907          10838043  2 +  17242564 --gg--------
i orcOrc1.KB316907         C 0 C 0
s odoRosDiv1.KB229025        3029282  1 +   4816872 --a---------
i odoRosDiv1.KB229025      I 4 C 0
s loxAfr3.scaffold_20       27614562 12 -  46401353 acagatttatca
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629           9961852 12 +  24341844 acagatttatca
i triMan1.JH594629         C 0 C 0
e musFur1.GL896914          13606356 958 -  19722643 I
e canFam3.chr17             57835588  0 -  64289059 C
e felCat8.chrA3            134102700 57 + 140925898 I
e ornAna1.Ultra479           3871811 7152 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637  0 -       895 I
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195       44258 5209 +     59083 T
e pseHum1.KB221193           9789407 578 +  32995986 T
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375358           1019718 687 +   1462937 T
e allMis1.JH737798             80260 1661 +    106177 T
e falPer1.KB391107           2216004 600 -   3101084 T
e falChe1.KB398074           4263387 600 -   7151304 T
e macEug2.GL059506              6470  0 +     21939 I
e galGal4.chr1              24067632 542 + 195276750 T
e geoFor1.JH739914           5157724 543 -   7168866 T
e melGal1.chr1              24929349 4997 + 204065131 T
e anaPla1.KB742960            141378  0 +    531124 I
e amaVit1.KB277496              7625 3737 -     10329 T
e apaSpi1.KB929668           5961501 297 -  12308914 T
e cheMyd1.KB478633           2433836 723 +   6037886 T
e chrPic2.chr2              18523590 544 -  68452538 T
e pelSin1.JH211373           2650239  0 -   4257854 I
e calJac3.chr14             99336234 1612 + 108792865 I
e melUnd1.JH556589           7680049 6397 -   7952740 T
e taeGut2.chr3              13879677 44 - 112617285 I
e dasNov3.JH567436           1026922 2299 -   2788317 I
e equCab2.chr15             84031580 47 +  91571448 I
e pteAle1.KB030580          19408670  0 -  23789964 C
e cerSim1.JH767782           6803986 1156 -  14545593 I
e rheMac3.chr8              61693383 6467 + 150158102 T
e macFas5.chr8              58367217 6565 + 146850525 T
e saiBol1.JH378126          24002667 1293 +  27210278 I
e chlSab2.chr8              53287758 6649 + 139301422 T
e panTro4.chr8              55025844 24898 + 143986469 T

a score=22924.000000
s hg38.chr8_KI270814v1_alt     81018 30 +    141812 tgcaaatagtagct--aagagagctgaagtag
s ponAbe2.chr8              59050574 30 + 153482349 tgcaaatagtagct--aagagagctgaagtag
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48124138 30 + 100215132 tgcaaatagtagct--aagagagctgaagtag
i nomLeu3.chr16            C 0 C 0
s otoGar3.GL873541          21183002 32 -  23169006 ggtgaatagcaaccaaaagaaagctggagtgg
i otoGar3.GL873541         I 18 C 0
s orcOrc1.KB316907          10838045  3 +  17242564 -----------------------ctg------
i orcOrc1.KB316907         C 0 C 0
s odoRosDiv1.KB229025        3029283 30 +   4816872 tgcaaacaggaaca--aagagagctggagtgg
i odoRosDiv1.KB229025      C 0 I 1
s loxAfr3.scaffold_20       27614574 32 -  46401353 tgcaaacaaccactacaagaaagctgggatgg
i loxAfr3.scaffold_20      C 0 C 0
s triMan1.JH594629           9961864 31 +  24341844 tgcaaacaa-caccacaagaaagctggggtgg
i triMan1.JH594629         C 0 C 0
e musFur1.GL896914          13606356 958 -  19722643 I
e vicPac2.KB632437          19207977 30 -  22931326 I
e camFer1.KB017763           2802366  1 -   6207710 I
e canFam3.chr17             57835588  0 -  64289059 C
e felCat8.chrA3            134102700 57 + 140925898 I
e ornAna1.Ultra479           3871811 7152 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637  0 -       895 I
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195       44258 5209 +     59083 T
e pseHum1.KB221193           9789407 578 +  32995986 T
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375358           1019718 687 +   1462937 T
e allMis1.JH737798             80260 1661 +    106177 T
e falPer1.KB391107           2216004 600 -   3101084 T
e falChe1.KB398074           4263387 600 -   7151304 T
e macEug2.GL059506              6470  0 +     21939 I
e galGal4.chr1              24067632 542 + 195276750 T
e geoFor1.JH739914           5157724 543 -   7168866 T
e melGal1.chr1              24929349 4997 + 204065131 T
e anaPla1.KB742960            141378  0 +    531124 I
e amaVit1.KB277496              7625 3737 -     10329 T
e apaSpi1.KB929668           5961501 297 -  12308914 T
e cheMyd1.KB478633           2433836 723 +   6037886 T
e chrPic2.chr2              18523590 544 -  68452538 T
e pelSin1.JH211373           2650239  0 -   4257854 I
e calJac3.chr14             99336234 1612 + 108792865 I
e melUnd1.JH556589           7680049 6397 -   7952740 T
e taeGut2.chr3              13879677 44 - 112617285 I
e dasNov3.JH567436           1026922 2299 -   2788317 I
e equCab2.chr15             84031580 47 +  91571448 I
e pteAle1.KB030580          19408670  0 -  23789964 C
e cerSim1.JH767782           6803986 1156 -  14545593 I
e rheMac3.chr8              61693383 6467 + 150158102 T
e macFas5.chr8              58367217 6565 + 146850525 T
e saiBol1.JH378126          24002667 1293 +  27210278 I
e chlSab2.chr8              53287758 6649 + 139301422 T
e panTro4.chr8              55025844 24898 + 143986469 T

a score=3586.000000
s hg38.chr8_KI270814v1_alt     81048 6 +    141812 TAACat
s ponAbe2.chr8              59050604 6 + 153482349 TAGtat
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48124168 6 + 100215132 TAAtat
i nomLeu3.chr16            C 0 C 0
s otoGar3.GL873541          21183034 6 -  23169006 TGGTAT
i otoGar3.GL873541         C 0 C 0
s loxAfr3.scaffold_20       27614606 6 -  46401353 ctatat
i loxAfr3.scaffold_20      C 0 I 161
s triMan1.JH594629           9961895 6 +  24341844 ctatat
i triMan1.JH594629         C 0 I 185
e musFur1.GL896914          13606356 958 -  19722643 I
e vicPac2.KB632437          19207977 30 -  22931326 I
e camFer1.KB017763           2802366 1 -   6207710 I
e odoRosDiv1.KB229025        3029313 1 +   4816872 I
e canFam3.chr17             57835588 0 -  64289059 C
e felCat8.chrA3            134102700 57 + 140925898 I
e ornAna1.Ultra479           3871811 7152 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637 0 -       895 I
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195       44258 5209 +     59083 T
e pseHum1.KB221193           9789407 578 +  32995986 T
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375358           1019718 687 +   1462937 T
e allMis1.JH737798             80260 1661 +    106177 T
e falPer1.KB391107           2216004 600 -   3101084 T
e falChe1.KB398074           4263387 600 -   7151304 T
e macEug2.GL059506              6470 0 +     21939 I
e galGal4.chr1              24067632 542 + 195276750 T
e geoFor1.JH739914           5157724 543 -   7168866 T
e melGal1.chr1              24929349 4997 + 204065131 T
e anaPla1.KB742960            141378 0 +    531124 I
e amaVit1.KB277496              7625 3737 -     10329 T
e apaSpi1.KB929668           5961501 297 -  12308914 T
e cheMyd1.KB478633           2433836 723 +   6037886 T
e chrPic2.chr2              18523590 544 -  68452538 T
e pelSin1.JH211373           2650239 0 -   4257854 I
e calJac3.chr14             99336234 1612 + 108792865 I
e melUnd1.JH556589           7680049 6397 -   7952740 T
e taeGut2.chr3              13879677 44 - 112617285 I
e dasNov3.JH567436           1026922 2299 -   2788317 I
e equCab2.chr15             84031580 47 +  91571448 I
e pteAle1.KB030580          19408670 0 -  23789964 C
e cerSim1.JH767782           6803986 1156 -  14545593 I
e orcOrc1.KB316907          10838048 0 +  17242564 C
e rheMac3.chr8              61693383 6467 + 150158102 T
e macFas5.chr8              58367217 6565 + 146850525 T
e saiBol1.JH378126          24002667 1293 +  27210278 I
e chlSab2.chr8              53287758 6649 + 139301422 T
e panTro4.chr8              55025844 24898 + 143986469 T

a score=-6305.000000
s hg38.chr8_KI270814v1_alt     81054 98 +    141812 ggtttgagtgtgtcctctaaaagttcttgtgttgaaaacttggtctccaacatagcagtgttgagaggtagaacctctgggaggtgacc----------agTAGAACC
s ponAbe2.chr8              59050610 98 + 153482349 ggtttgagtgtgtcctctaaaagttcttgtgttgaaaacttggtctccaacgtagcagtgttgagaggtagaacctctgggaggtgacc----------agtagaacc
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48124174 98 + 100215132 ggtttgagtgtgtcctctaaaatttcttgtgttgaaaacttggtctctaacgcagcagtgttgagaggtagaacctctgggaggtgacc----------agtagaacc
i nomLeu3.chr16            C 0 C 0
s otoGar3.GL873541          21183040 97 -  23169006 G----AAGCG-GTCT----ACagttcctgtgctggaaactcaggccccagtgcagcagcactgagagccaagac--ctgggcagtgactgcattatgaggacAGATTA
i otoGar3.GL873541         C 0 C 0
s camFer1.KB017763           2802367 28 -   6207710 --------------------------------------------------------------tggggggaaatcccctg--------ca----------aatagaaac
i camFer1.KB017763         I 1 C 0
s orcOrc1.KB316907          10838048 28 +  17242564 --------------------------------------------------------------gagagagaaatcccatg--------ca----------aatagaaac
i orcOrc1.KB316907         C 0 C 0
s canFam3.chr17             57835588 18 -  64289059 ------------------------------------------------------------------------ttccatg--------ca----------aacagaaac
i canFam3.chr17            C 0 C 0
s pteAle1.KB030580          19408670 36 -  23789964 --------------------------------------ctcag----------------ggtgaaaaagaaattccagg--------ta----------aacagaagc
i pteAle1.KB030580         C 0 C 0
e musFur1.GL896914          13606356 958 -  19722643 I
e vicPac2.KB632437          19207977 30 -  22931326 I
e odoRosDiv1.KB229025        3029313  1 +   4816872 I
e felCat8.chrA3            134102700 57 + 140925898 I
e ornAna1.Ultra479           3871811 7152 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637  0 -       895 I
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195       44258 5209 +     59083 T
e pseHum1.KB221193           9789407 578 +  32995986 T
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375358           1019718 687 +   1462937 T
e allMis1.JH737798             80260 1661 +    106177 T
e falPer1.KB391107           2216004 600 -   3101084 T
e falChe1.KB398074           4263387 600 -   7151304 T
e macEug2.GL059506              6470  0 +     21939 I
e galGal4.chr1              24067632 542 + 195276750 T
e geoFor1.JH739914           5157724 543 -   7168866 T
e melGal1.chr1              24929349 4997 + 204065131 T
e anaPla1.KB742960            141378  0 +    531124 I
e amaVit1.KB277496              7625 3737 -     10329 T
e apaSpi1.KB929668           5961501 297 -  12308914 T
e cheMyd1.KB478633           2433836 723 +   6037886 T
e chrPic2.chr2              18523590 544 -  68452538 T
e pelSin1.JH211373           2650239  0 -   4257854 I
e calJac3.chr14             99336234 1612 + 108792865 I
e melUnd1.JH556589           7680049 6397 -   7952740 T
e taeGut2.chr3              13879677 44 - 112617285 I
e dasNov3.JH567436           1026922 2299 -   2788317 I
e equCab2.chr15             84031580 47 +  91571448 I
e triMan1.JH594629           9961901 185 +  24341844 I
e loxAfr3.scaffold_20       27614612 161 -  46401353 I
e cerSim1.JH767782           6803986 1156 -  14545593 I
e rheMac3.chr8              61693383 6467 + 150158102 T
e macFas5.chr8              58367217 6565 + 146850525 T
e saiBol1.JH378126          24002667 1293 +  27210278 I
e chlSab2.chr8              53287758 6649 + 139301422 T
e panTro4.chr8              55025844 24898 + 143986469 T

a score=-56622.000000
s hg38.chr8_KI270814v1_alt     81152  79 +    141812 Tttcagagg---taaaactttt------gagaggtag-------------------------aacctttgg--------------------------------------gtggcaaagtc------------------------------------------ctcatgag------------------tgaattaatccattcatgggtta
s ponAbe2.chr8              59050708  79 + 153482349 tttgagagg---taaaactttt------gagaggtag-------------------------aacctttgg--------------------------------------gtggcaaagtc------------------------------------------ctcatgag------------------tgaattaatccattcatgggtta
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48124272  63 + 100215132 -------------------ttt------gagaggtag-------------------------aacctttgg--------------------------------------gaggcaaagtc------------------------------------------ctcatgag------------------tgagttaatccattcatgggtta
i nomLeu3.chr16            C 0 C 0
s otoGar3.GL873541          21183137 211 -  23169006 ATCcaggggtcctcaaactttttaaacaggggggcagttcactgtccctcagaccgtgggccgACCTCAGGCCTCAGGACGTGTCGGCTGCTAAGCCGGACAGGCACTAGAGGCAAAAACACCCATGGGGCCAGATAAATGCCCTAGGCGGGCCGCAGGTGGCCCATGGGCCATAGTTTGAGGACACCTGGATTAAGCCATTGGtgaatta
i otoGar3.GL873541         C 0 C 0
s camFer1.KB017763           2802395   1 -   6207710 ----------------------c--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
i camFer1.KB017763         C 0 C 0
s canFam3.chr17             57835606  10 -  64289059 ----------------------ttaa---agagct--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
i canFam3.chr17            C 0 C 0
s pteAle1.KB030580          19408706  12 -  23789964 ----------------------cgaaa-gagagat--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
i pteAle1.KB030580         C 0 C 0
e musFur1.GL896914          13606356 958 -  19722643 I
e vicPac2.KB632437          19207977  30 -  22931326 I
e odoRosDiv1.KB229025        3029313   1 +   4816872 I
e felCat8.chrA3            134102700  57 + 140925898 I
e ornAna1.Ultra479           3871811 7152 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637   0 -       895 I
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195       44258 5209 +     59083 T
e pseHum1.KB221193           9789407 578 +  32995986 T
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375358           1019718 687 +   1462937 T
e allMis1.JH737798             80260 1661 +    106177 T
e falPer1.KB391107           2216004 600 -   3101084 T
e falChe1.KB398074           4263387 600 -   7151304 T
e macEug2.GL059506              6470   0 +     21939 I
e galGal4.chr1              24067632 542 + 195276750 T
e geoFor1.JH739914           5157724 543 -   7168866 T
e melGal1.chr1              24929349 4997 + 204065131 T
e anaPla1.KB742960            141378   0 +    531124 I
e amaVit1.KB277496              7625 3737 -     10329 T
e apaSpi1.KB929668           5961501 297 -  12308914 T
e cheMyd1.KB478633           2433836 723 +   6037886 T
e chrPic2.chr2              18523590 544 -  68452538 T
e pelSin1.JH211373           2650239   0 -   4257854 I
e calJac3.chr14             99336234 1612 + 108792865 I
e melUnd1.JH556589           7680049 6397 -   7952740 T
e taeGut2.chr3              13879677  44 - 112617285 I
e dasNov3.JH567436           1026922 2299 -   2788317 I
e equCab2.chr15             84031580  47 +  91571448 I
e triMan1.JH594629           9961901 185 +  24341844 I
e loxAfr3.scaffold_20       27614612 161 -  46401353 I
e cerSim1.JH767782           6803986 1156 -  14545593 I
e orcOrc1.KB316907          10838076   0 +  17242564 C
e rheMac3.chr8              61693383 6467 + 150158102 T
e macFas5.chr8              58367217 6565 + 146850525 T
e saiBol1.JH378126          24002667 1293 +  27210278 I
e chlSab2.chr8              53287758 6649 + 139301422 T
e panTro4.chr8              55025844 24898 + 143986469 T

a score=8512.000000
s hg38.chr8_KI270814v1_alt     81231 14 +    141812 atg--------agggagtgggt
s ponAbe2.chr8              59050787 14 + 153482349 atg--------agggagtgggt
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48124335 14 + 100215132 atg--------agggagtgggt
i nomLeu3.chr16            C 0 C 0
s otoGar3.GL873541          21183348 22 -  23169006 acggactgtcaagggagtaggt
i otoGar3.GL873541         C 0 C 0
s vicPac2.KB632437          19208007 13 -  22931326 ata--------agagagtggg-
i vicPac2.KB632437         I 30 C 0
s camFer1.KB017763           2802396 13 -   6207710 ata--------agagagtggg-
i camFer1.KB017763         C 0 C 0
s canFam3.chr17             57835616  9 -  64289059 -------------ggagtggct
i canFam3.chr17            C 0 I 2
s pteAle1.KB030580          19408718  9 -  23789964 -------------ggagcgggc
i pteAle1.KB030580         C 0 C 0
e musFur1.GL896914          13606356 958 -  19722643 I
e odoRosDiv1.KB229025        3029313  1 +   4816872 I
e felCat8.chrA3            134102700 57 + 140925898 I
e ornAna1.Ultra479           3871811 7152 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637  0 -       895 I
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195       44258 5209 +     59083 T
e pseHum1.KB221193           9789407 578 +  32995986 T
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375358           1019718 687 +   1462937 T
e allMis1.JH737798             80260 1661 +    106177 T
e falPer1.KB391107           2216004 600 -   3101084 T
e falChe1.KB398074           4263387 600 -   7151304 T
e macEug2.GL059506              6470  0 +     21939 I
e galGal4.chr1              24067632 542 + 195276750 T
e geoFor1.JH739914           5157724 543 -   7168866 T
e melGal1.chr1              24929349 4997 + 204065131 T
e anaPla1.KB742960            141378  0 +    531124 I
e amaVit1.KB277496              7625 3737 -     10329 T
e apaSpi1.KB929668           5961501 297 -  12308914 T
e cheMyd1.KB478633           2433836 723 +   6037886 T
e chrPic2.chr2              18523590 544 -  68452538 T
e pelSin1.JH211373           2650239  0 -   4257854 I
e calJac3.chr14             99336234 1612 + 108792865 I
e melUnd1.JH556589           7680049 6397 -   7952740 T
e taeGut2.chr3              13879677 44 - 112617285 I
e dasNov3.JH567436           1026922 2299 -   2788317 I
e equCab2.chr15             84031580 47 +  91571448 I
e triMan1.JH594629           9961901 185 +  24341844 I
e loxAfr3.scaffold_20       27614612 161 -  46401353 I
e cerSim1.JH767782           6803986 1156 -  14545593 I
e orcOrc1.KB316907          10838076  0 +  17242564 C
e rheMac3.chr8              61693383 6467 + 150158102 T
e macFas5.chr8              58367217 6565 + 146850525 T
e saiBol1.JH378126          24002667 1293 +  27210278 I
e chlSab2.chr8              53287758 6649 + 139301422 T
e panTro4.chr8              55025844 24898 + 143986469 T

a score=2010.000000
s hg38.chr8_KI270814v1_alt     81245 3 +    141812 cac
s ponAbe2.chr8              59050801 3 + 153482349 cac
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48124349 3 + 100215132 cac
i nomLeu3.chr16            C 0 C 0
s otoGar3.GL873541          21183370 3 -  23169006 cag
i otoGar3.GL873541         C 0 C 0
s pteAle1.KB030580          19408727 3 -  23789964 cac
i pteAle1.KB030580         C 0 C 0
e musFur1.GL896914          13606356 958 -  19722643 I
e vicPac2.KB632437          19208020 0 -  22931326 C
e camFer1.KB017763           2802409 0 -   6207710 C
e odoRosDiv1.KB229025        3029313 1 +   4816872 I
e canFam3.chr17             57835625 2 -  64289059 I
e felCat8.chrA3            134102700 57 + 140925898 I
e ornAna1.Ultra479           3871811 7152 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637 0 -       895 I
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195       44258 5209 +     59083 T
e pseHum1.KB221193           9789407 578 +  32995986 T
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375358           1019718 687 +   1462937 T
e allMis1.JH737798             80260 1661 +    106177 T
e falPer1.KB391107           2216004 600 -   3101084 T
e falChe1.KB398074           4263387 600 -   7151304 T
e macEug2.GL059506              6470 0 +     21939 I
e galGal4.chr1              24067632 542 + 195276750 T
e geoFor1.JH739914           5157724 543 -   7168866 T
e melGal1.chr1              24929349 4997 + 204065131 T
e anaPla1.KB742960            141378 0 +    531124 I
e amaVit1.KB277496              7625 3737 -     10329 T
e apaSpi1.KB929668           5961501 297 -  12308914 T
e cheMyd1.KB478633           2433836 723 +   6037886 T
e chrPic2.chr2              18523590 544 -  68452538 T
e pelSin1.JH211373           2650239 0 -   4257854 I
e calJac3.chr14             99336234 1612 + 108792865 I
e melUnd1.JH556589           7680049 6397 -   7952740 T
e taeGut2.chr3              13879677 44 - 112617285 I
e dasNov3.JH567436           1026922 2299 -   2788317 I
e equCab2.chr15             84031580 47 +  91571448 I
e triMan1.JH594629           9961901 185 +  24341844 I
e loxAfr3.scaffold_20       27614612 161 -  46401353 I
e cerSim1.JH767782           6803986 1156 -  14545593 I
e orcOrc1.KB316907          10838076 0 +  17242564 C
e rheMac3.chr8              61693383 6467 + 150158102 T
e macFas5.chr8              58367217 6565 + 146850525 T
e saiBol1.JH378126          24002667 1293 +  27210278 I
e chlSab2.chr8              53287758 6649 + 139301422 T
e panTro4.chr8              55025844 24898 + 143986469 T

a score=2289.000000
s hg38.chr8_KI270814v1_alt     81248 6 +    141812 ttatga
s ponAbe2.chr8              59050804 6 + 153482349 ttatga
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48124352 6 + 100215132 ttatga
i nomLeu3.chr16            C 0 C 0
s otoGar3.GL873541          21183373 6 -  23169006 ctatca
i otoGar3.GL873541         C 0 C 0
e musFur1.GL896914          13606356 958 -  19722643 I
e vicPac2.KB632437          19208020 0 -  22931326 C
e camFer1.KB017763           2802409 0 -   6207710 C
e odoRosDiv1.KB229025        3029313 1 +   4816872 I
e canFam3.chr17             57835625 2 -  64289059 I
e felCat8.chrA3            134102700 57 + 140925898 I
e ornAna1.Ultra479           3871811 7152 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637 0 -       895 I
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195       44258 5209 +     59083 T
e pseHum1.KB221193           9789407 578 +  32995986 T
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375358           1019718 687 +   1462937 T
e allMis1.JH737798             80260 1661 +    106177 T
e falPer1.KB391107           2216004 600 -   3101084 T
e falChe1.KB398074           4263387 600 -   7151304 T
e macEug2.GL059506              6470 0 +     21939 I
e galGal4.chr1              24067632 542 + 195276750 T
e geoFor1.JH739914           5157724 543 -   7168866 T
e melGal1.chr1              24929349 4997 + 204065131 T
e anaPla1.KB742960            141378 0 +    531124 I
e amaVit1.KB277496              7625 3737 -     10329 T
e apaSpi1.KB929668           5961501 297 -  12308914 T
e cheMyd1.KB478633           2433836 723 +   6037886 T
e chrPic2.chr2              18523590 544 -  68452538 T
e pelSin1.JH211373           2650239 0 -   4257854 I
e calJac3.chr14             99336234 1612 + 108792865 I
e melUnd1.JH556589           7680049 6397 -   7952740 T
e taeGut2.chr3              13879677 44 - 112617285 I
e dasNov3.JH567436           1026922 2299 -   2788317 I
e equCab2.chr15             84031580 47 +  91571448 I
e triMan1.JH594629           9961901 185 +  24341844 I
e loxAfr3.scaffold_20       27614612 161 -  46401353 I
e pteAle1.KB030580          19408730 0 -  23789964 C
e cerSim1.JH767782           6803986 1156 -  14545593 I
e orcOrc1.KB316907          10838076 0 +  17242564 C
e rheMac3.chr8              61693383 6467 + 150158102 T
e macFas5.chr8              58367217 6565 + 146850525 T
e saiBol1.JH378126          24002667 1293 +  27210278 I
e chlSab2.chr8              53287758 6649 + 139301422 T
e panTro4.chr8              55025844 24898 + 143986469 T

a score=-1428.000000
s hg38.chr8_KI270814v1_alt     81254 46 +    141812 caaaagtggatctcttataaaagccaatttggcTATCGCTTGTGAG
s ponAbe2.chr8              59050810 40 + 153482349 caaaagtggatctcttataaaagccaatttggcT------TGTGAG
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48124358 46 + 100215132 caaaagtggatctcttaaaaaagccaatttggcTATCGCTTGTGAG
i nomLeu3.chr16            C 0 C 0
s otoGar3.GL873541          21183379 46 -  23169006 ctagactaggtctggcctaccagcctgttgggccatctctcacgtg
i otoGar3.GL873541         C 0 I 114
s vicPac2.KB632437          19208020 10 -  22931326 ---------------------------agcggctgtc---------
i vicPac2.KB632437         C 0 C 0
s camFer1.KB017763           2802409 10 -   6207710 ---------------------------agcggctgtc---------
i camFer1.KB017763         C 0 C 0
s orcOrc1.KB316907          10838076 24 +  17242564 caaaag-------------agagccggagtggctgta---------
i orcOrc1.KB316907         C 0 C 0
e musFur1.GL896914          13606356 958 -  19722643 I
e odoRosDiv1.KB229025        3029313  1 +   4816872 I
e canFam3.chr17             57835625  2 -  64289059 I
e felCat8.chrA3            134102700 57 + 140925898 I
e ornAna1.Ultra479           3871811 7152 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637  0 -       895 I
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195       44258 5209 +     59083 T
e pseHum1.KB221193           9789407 578 +  32995986 T
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375358           1019718 687 +   1462937 T
e allMis1.JH737798             80260 1661 +    106177 T
e falPer1.KB391107           2216004 600 -   3101084 T
e falChe1.KB398074           4263387 600 -   7151304 T
e macEug2.GL059506              6470  0 +     21939 I
e galGal4.chr1              24067632 542 + 195276750 T
e geoFor1.JH739914           5157724 543 -   7168866 T
e melGal1.chr1              24929349 4997 + 204065131 T
e anaPla1.KB742960            141378  0 +    531124 I
e amaVit1.KB277496              7625 3737 -     10329 T
e apaSpi1.KB929668           5961501 297 -  12308914 T
e cheMyd1.KB478633           2433836 723 +   6037886 T
e chrPic2.chr2              18523590 544 -  68452538 T
e pelSin1.JH211373           2650239  0 -   4257854 I
e calJac3.chr14             99336234 1612 + 108792865 I
e melUnd1.JH556589           7680049 6397 -   7952740 T
e taeGut2.chr3              13879677 44 - 112617285 I
e dasNov3.JH567436           1026922 2299 -   2788317 I
e equCab2.chr15             84031580 47 +  91571448 I
e triMan1.JH594629           9961901 185 +  24341844 I
e loxAfr3.scaffold_20       27614612 161 -  46401353 I
e pteAle1.KB030580          19408730  0 -  23789964 C
e cerSim1.JH767782           6803986 1156 -  14545593 I
e rheMac3.chr8              61693383 6467 + 150158102 T
e macFas5.chr8              58367217 6565 + 146850525 T
e saiBol1.JH378126          24002667 1293 +  27210278 I
e chlSab2.chr8              53287758 6649 + 139301422 T
e panTro4.chr8              55025844 24898 + 143986469 T

a score=-9706.000000
s hg38.chr8_KI270814v1_alt     81300 57 +    141812 TAA-----------------tttataaaat----agtctcaggtattcagtt--atagcaacaggaaagagactaagGTA
s ponAbe2.chr8              59050850 57 + 153482349 TAA-----------------tttataaaat----agtctcaggtattcagtt--atagcaacagaaaagagactaagGTA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48124404 56 + 100215132 TAA-----------------tttataaaat----agtctcaggtattcagtt--atagcaacag-aaagagactaagGTA
i nomLeu3.chr16            C 0 C 0
s otoGar3.GL873541          21183539 78 -  23169006 taaaaaatgaatttattttctttataaattactcagtctcaggtattcaatt--atagcaacagaaaatagactaagaca
i otoGar3.GL873541         I 114 C 0
s vicPac2.KB632437          19208030  5 -  22931326 -----------------------------------------------cagtt----------------------------
i vicPac2.KB632437         C 0 I 2
s camFer1.KB017763           2802419  5 -   6207710 -----------------------------------------------caatt----------------------------
i camFer1.KB017763         C 0 I 2
s orcOrc1.KB316907          10838100  7 +  17242564 -----------------------------------------------ctaatac--------------------------
i orcOrc1.KB316907         C 0 C 0
e musFur1.GL896914          13606356 958 -  19722643 I
e odoRosDiv1.KB229025        3029313  1 +   4816872 I
e canFam3.chr17             57835625  2 -  64289059 I
e felCat8.chrA3            134102700 57 + 140925898 I
e ornAna1.Ultra479           3871811 7152 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637  0 -       895 I
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195       44258 5209 +     59083 T
e pseHum1.KB221193           9789407 578 +  32995986 T
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375358           1019718 687 +   1462937 T
e allMis1.JH737798             80260 1661 +    106177 T
e falPer1.KB391107           2216004 600 -   3101084 T
e falChe1.KB398074           4263387 600 -   7151304 T
e macEug2.GL059506              6470  0 +     21939 I
e galGal4.chr1              24067632 542 + 195276750 T
e geoFor1.JH739914           5157724 543 -   7168866 T
e melGal1.chr1              24929349 4997 + 204065131 T
e anaPla1.KB742960            141378  0 +    531124 I
e amaVit1.KB277496              7625 3737 -     10329 T
e apaSpi1.KB929668           5961501 297 -  12308914 T
e cheMyd1.KB478633           2433836 723 +   6037886 T
e chrPic2.chr2              18523590 544 -  68452538 T
e pelSin1.JH211373           2650239  0 -   4257854 I
e calJac3.chr14             99336234 1612 + 108792865 I
e melUnd1.JH556589           7680049 6397 -   7952740 T
e taeGut2.chr3              13879677 44 - 112617285 I
e dasNov3.JH567436           1026922 2299 -   2788317 I
e equCab2.chr15             84031580 47 +  91571448 I
e triMan1.JH594629           9961901 185 +  24341844 I
e loxAfr3.scaffold_20       27614612 161 -  46401353 I
e pteAle1.KB030580          19408730  0 -  23789964 C
e cerSim1.JH767782           6803986 1156 -  14545593 I
e rheMac3.chr8              61693383 6467 + 150158102 T
e macFas5.chr8              58367217 6565 + 146850525 T
e saiBol1.JH378126          24002667 1293 +  27210278 I
e chlSab2.chr8              53287758 6649 + 139301422 T
e panTro4.chr8              55025844 24898 + 143986469 T

a score=2931.000000
s hg38.chr8_KI270814v1_alt     81357 5 +    141812 AGTAT
s ponAbe2.chr8              59050907 5 + 153482349 AGTAT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48124460 5 + 100215132 AGTAT
i nomLeu3.chr16            C 0 C 0
s otoGar3.GL873541          21183617 5 -  23169006 AGTGG
i otoGar3.GL873541         C 0 C 0
s equCab2.chr15             84031627 5 +  91571448 agtag
i equCab2.chr15            I 47 I 1
e musFur1.GL896914          13606356 958 -  19722643 I
e vicPac2.KB632437          19208035 2 -  22931326 I
e camFer1.KB017763           2802424 2 -   6207710 I
e odoRosDiv1.KB229025        3029313 1 +   4816872 I
e canFam3.chr17             57835625 2 -  64289059 I
e felCat8.chrA3            134102700 57 + 140925898 I
e ornAna1.Ultra479           3871811 7152 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637 0 -       895 I
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195       44258 5209 +     59083 T
e pseHum1.KB221193           9789407 578 +  32995986 T
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375358           1019718 687 +   1462937 T
e allMis1.JH737798             80260 1661 +    106177 T
e falPer1.KB391107           2216004 600 -   3101084 T
e falChe1.KB398074           4263387 600 -   7151304 T
e macEug2.GL059506              6470 0 +     21939 I
e galGal4.chr1              24067632 542 + 195276750 T
e geoFor1.JH739914           5157724 543 -   7168866 T
e melGal1.chr1              24929349 4997 + 204065131 T
e anaPla1.KB742960            141378 0 +    531124 I
e amaVit1.KB277496              7625 3737 -     10329 T
e apaSpi1.KB929668           5961501 297 -  12308914 T
e cheMyd1.KB478633           2433836 723 +   6037886 T
e chrPic2.chr2              18523590 544 -  68452538 T
e pelSin1.JH211373           2650239 0 -   4257854 I
e calJac3.chr14             99336234 1612 + 108792865 I
e melUnd1.JH556589           7680049 6397 -   7952740 T
e taeGut2.chr3              13879677 44 - 112617285 I
e dasNov3.JH567436           1026922 2299 -   2788317 I
e triMan1.JH594629           9961901 185 +  24341844 I
e loxAfr3.scaffold_20       27614612 161 -  46401353 I
e pteAle1.KB030580          19408730 0 -  23789964 C
e cerSim1.JH767782           6803986 1156 -  14545593 I
e orcOrc1.KB316907          10838107 0 +  17242564 C
e rheMac3.chr8              61693383 6467 + 150158102 T
e macFas5.chr8              58367217 6565 + 146850525 T
e saiBol1.JH378126          24002667 1293 +  27210278 I
e chlSab2.chr8              53287758 6649 + 139301422 T
e panTro4.chr8              55025844 24898 + 143986469 T

a score=-69.000000
s hg38.chr8_KI270814v1_alt     81362 1 +    141812 A
s ponAbe2.chr8              59050912 1 + 153482349 A
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48124465 1 + 100215132 A
i nomLeu3.chr16            C 0 C 0
s otoGar3.GL873541          21183622 1 -  23169006 C
i otoGar3.GL873541         C 0 C 0
e musFur1.GL896914          13606356 958 -  19722643 I
e vicPac2.KB632437          19208035 2 -  22931326 I
e camFer1.KB017763           2802424 2 -   6207710 I
e odoRosDiv1.KB229025        3029313 1 +   4816872 I
e canFam3.chr17             57835625 2 -  64289059 I
e felCat8.chrA3            134102700 57 + 140925898 I
e ornAna1.Ultra479           3871811 7152 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637 0 -       895 I
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195       44258 5209 +     59083 T
e pseHum1.KB221193           9789407 578 +  32995986 T
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375358           1019718 687 +   1462937 T
e allMis1.JH737798             80260 1661 +    106177 T
e falPer1.KB391107           2216004 600 -   3101084 T
e falChe1.KB398074           4263387 600 -   7151304 T
e macEug2.GL059506              6470 0 +     21939 I
e galGal4.chr1              24067632 542 + 195276750 T
e geoFor1.JH739914           5157724 543 -   7168866 T
e melGal1.chr1              24929349 4997 + 204065131 T
e anaPla1.KB742960            141378 0 +    531124 I
e amaVit1.KB277496              7625 3737 -     10329 T
e apaSpi1.KB929668           5961501 297 -  12308914 T
e cheMyd1.KB478633           2433836 723 +   6037886 T
e chrPic2.chr2              18523590 544 -  68452538 T
e pelSin1.JH211373           2650239 0 -   4257854 I
e calJac3.chr14             99336234 1612 + 108792865 I
e melUnd1.JH556589           7680049 6397 -   7952740 T
e taeGut2.chr3              13879677 44 - 112617285 I
e dasNov3.JH567436           1026922 2299 -   2788317 I
e equCab2.chr15             84031632 1 +  91571448 I
e triMan1.JH594629           9961901 185 +  24341844 I
e loxAfr3.scaffold_20       27614612 161 -  46401353 I
e pteAle1.KB030580          19408730 0 -  23789964 C
e cerSim1.JH767782           6803986 1156 -  14545593 I
e orcOrc1.KB316907          10838107 0 +  17242564 C
e rheMac3.chr8              61693383 6467 + 150158102 T
e macFas5.chr8              58367217 6565 + 146850525 T
e saiBol1.JH378126          24002667 1293 +  27210278 I
e chlSab2.chr8              53287758 6649 + 139301422 T
e panTro4.chr8              55025844 24898 + 143986469 T

a score=745.000000
s hg38.chr8_KI270814v1_alt     81363 1 +    141812 C
s ponAbe2.chr8              59050913 1 + 153482349 T
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48124466 1 + 100215132 T
i nomLeu3.chr16            C 0 C 0
s otoGar3.GL873541          21183623 1 -  23169006 T
i otoGar3.GL873541         C 0 C 0
s orcOrc1.KB316907          10838107 1 +  17242564 c
i orcOrc1.KB316907         C 0 I 2
s equCab2.chr15             84031633 1 +  91571448 t
i equCab2.chr15            I 1 I 2
s felCat8.chrA3            134102757 1 + 140925898 c
i felCat8.chrA3            I 57 I 2
s odoRosDiv1.KB229025        3029314 1 +   4816872 t
i odoRosDiv1.KB229025      I 1 I 2
e musFur1.GL896914          13606356 958 -  19722643 I
e vicPac2.KB632437          19208035 2 -  22931326 I
e camFer1.KB017763           2802424 2 -   6207710 I
e canFam3.chr17             57835625 2 -  64289059 I
e ornAna1.Ultra479           3871811 7152 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637 0 -       895 I
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195       44258 5209 +     59083 T
e pseHum1.KB221193           9789407 578 +  32995986 T
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375358           1019718 687 +   1462937 T
e allMis1.JH737798             80260 1661 +    106177 T
e falPer1.KB391107           2216004 600 -   3101084 T
e falChe1.KB398074           4263387 600 -   7151304 T
e macEug2.GL059506              6470 0 +     21939 I
e galGal4.chr1              24067632 542 + 195276750 T
e geoFor1.JH739914           5157724 543 -   7168866 T
e melGal1.chr1              24929349 4997 + 204065131 T
e anaPla1.KB742960            141378 0 +    531124 I
e amaVit1.KB277496              7625 3737 -     10329 T
e apaSpi1.KB929668           5961501 297 -  12308914 T
e cheMyd1.KB478633           2433836 723 +   6037886 T
e chrPic2.chr2              18523590 544 -  68452538 T
e pelSin1.JH211373           2650239 0 -   4257854 I
e calJac3.chr14             99336234 1612 + 108792865 I
e melUnd1.JH556589           7680049 6397 -   7952740 T
e taeGut2.chr3              13879677 44 - 112617285 I
e dasNov3.JH567436           1026922 2299 -   2788317 I
e triMan1.JH594629           9961901 185 +  24341844 I
e loxAfr3.scaffold_20       27614612 161 -  46401353 I
e pteAle1.KB030580          19408730 0 -  23789964 C
e cerSim1.JH767782           6803986 1156 -  14545593 I
e rheMac3.chr8              61693383 6467 + 150158102 T
e macFas5.chr8              58367217 6565 + 146850525 T
e saiBol1.JH378126          24002667 1293 +  27210278 I
e chlSab2.chr8              53287758 6649 + 139301422 T
e panTro4.chr8              55025844 24898 + 143986469 T

a score=910.000000
s hg38.chr8_KI270814v1_alt     81364 1 +    141812 A
s ponAbe2.chr8              59050914 1 + 153482349 A
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48124467 1 + 100215132 A
i nomLeu3.chr16            C 0 C 0
s otoGar3.GL873541          21183624 1 -  23169006 A
i otoGar3.GL873541         C 0 C 0
s dasNov3.JH567436           1029221 1 -   2788317 a
i dasNov3.JH567436         I 2299 C 0
e musFur1.GL896914          13606356 958 -  19722643 I
e vicPac2.KB632437          19208035 2 -  22931326 I
e camFer1.KB017763           2802424 2 -   6207710 I
e odoRosDiv1.KB229025        3029315 2 +   4816872 I
e canFam3.chr17             57835625 2 -  64289059 I
e felCat8.chrA3            134102758 2 + 140925898 I
e ornAna1.Ultra479           3871811 7152 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637 0 -       895 I
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195       44258 5209 +     59083 T
e pseHum1.KB221193           9789407 578 +  32995986 T
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375358           1019718 687 +   1462937 T
e allMis1.JH737798             80260 1661 +    106177 T
e falPer1.KB391107           2216004 600 -   3101084 T
e falChe1.KB398074           4263387 600 -   7151304 T
e macEug2.GL059506              6470 0 +     21939 I
e galGal4.chr1              24067632 542 + 195276750 T
e geoFor1.JH739914           5157724 543 -   7168866 T
e melGal1.chr1              24929349 4997 + 204065131 T
e anaPla1.KB742960            141378 0 +    531124 I
e amaVit1.KB277496              7625 3737 -     10329 T
e apaSpi1.KB929668           5961501 297 -  12308914 T
e cheMyd1.KB478633           2433836 723 +   6037886 T
e chrPic2.chr2              18523590 544 -  68452538 T
e pelSin1.JH211373           2650239 0 -   4257854 I
e calJac3.chr14             99336234 1612 + 108792865 I
e melUnd1.JH556589           7680049 6397 -   7952740 T
e taeGut2.chr3              13879677 44 - 112617285 I
e equCab2.chr15             84031634 2 +  91571448 I
e triMan1.JH594629           9961901 185 +  24341844 I
e loxAfr3.scaffold_20       27614612 161 -  46401353 I
e pteAle1.KB030580          19408730 0 -  23789964 C
e cerSim1.JH767782           6803986 1156 -  14545593 I
e orcOrc1.KB316907          10838108 2 +  17242564 I
e rheMac3.chr8              61693383 6467 + 150158102 T
e macFas5.chr8              58367217 6565 + 146850525 T
e saiBol1.JH378126          24002667 1293 +  27210278 I
e chlSab2.chr8              53287758 6649 + 139301422 T
e panTro4.chr8              55025844 24898 + 143986469 T

a score=398.000000
s hg38.chr8_KI270814v1_alt     81365 1 +    141812 T
s ponAbe2.chr8              59050915 1 + 153482349 C
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48124468 1 + 100215132 T
i nomLeu3.chr16            C 0 C 0
s otoGar3.GL873541          21183625 1 -  23169006 T
i otoGar3.GL873541         C 0 C 0
s loxAfr3.scaffold_20       27614773 1 -  46401353 c
i loxAfr3.scaffold_20      I 161 C 0
s dasNov3.JH567436           1029222 1 -   2788317 t
i dasNov3.JH567436         C 0 C 0
e musFur1.GL896914          13606356 958 -  19722643 I
e vicPac2.KB632437          19208035 2 -  22931326 I
e camFer1.KB017763           2802424 2 -   6207710 I
e odoRosDiv1.KB229025        3029315 2 +   4816872 I
e canFam3.chr17             57835625 2 -  64289059 I
e felCat8.chrA3            134102758 2 + 140925898 I
e ornAna1.Ultra479           3871811 7152 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637 0 -       895 I
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195       44258 5209 +     59083 T
e pseHum1.KB221193           9789407 578 +  32995986 T
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375358           1019718 687 +   1462937 T
e allMis1.JH737798             80260 1661 +    106177 T
e falPer1.KB391107           2216004 600 -   3101084 T
e falChe1.KB398074           4263387 600 -   7151304 T
e macEug2.GL059506              6470 0 +     21939 I
e galGal4.chr1              24067632 542 + 195276750 T
e geoFor1.JH739914           5157724 543 -   7168866 T
e melGal1.chr1              24929349 4997 + 204065131 T
e anaPla1.KB742960            141378 0 +    531124 I
e amaVit1.KB277496              7625 3737 -     10329 T
e apaSpi1.KB929668           5961501 297 -  12308914 T
e cheMyd1.KB478633           2433836 723 +   6037886 T
e chrPic2.chr2              18523590 544 -  68452538 T
e pelSin1.JH211373           2650239 0 -   4257854 I
e calJac3.chr14             99336234 1612 + 108792865 I
e melUnd1.JH556589           7680049 6397 -   7952740 T
e taeGut2.chr3              13879677 44 - 112617285 I
e equCab2.chr15             84031634 2 +  91571448 I
e triMan1.JH594629           9961901 185 +  24341844 I
e pteAle1.KB030580          19408730 0 -  23789964 C
e cerSim1.JH767782           6803986 1156 -  14545593 I
e orcOrc1.KB316907          10838108 2 +  17242564 I
e rheMac3.chr8              61693383 6467 + 150158102 T
e macFas5.chr8              58367217 6565 + 146850525 T
e saiBol1.JH378126          24002667 1293 +  27210278 I
e chlSab2.chr8              53287758 6649 + 139301422 T
e panTro4.chr8              55025844 24898 + 143986469 T

a score=-5805.000000
s hg38.chr8_KI270814v1_alt     81366 22 +    141812 ACTAACG------------TCAGACAAAATAGA-C
s ponAbe2.chr8              59050916 22 + 153482349 ACTAACG------------TCAGACAAAATAGA-C
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr16             48124469 22 + 100215132 ACTAACG------------TCAGACAAAATAGA-C
i nomLeu3.chr16            C 0 C 0
s otoGar3.GL873541          21183626 22 -  23169006 ACTGACA------------TCAGGCACAACAAA-C
i otoGar3.GL873541         C 0 C 0
s vicPac2.KB632437          19208037 12 -  22931326 acaaaTA------------TGAGA-----------
i vicPac2.KB632437         I 2 C 0
s camFer1.KB017763           2802426 12 -   6207710 acaaaTG------------TGAGA-----------
i camFer1.KB017763         I 2 C 0
s orcOrc1.KB316907          10838110  8 +  17242564 acagaTA------------T---------------
i orcOrc1.KB316907         I 2 C 0
s equCab2.chr15             84031636 21 +  91571448 actagta------------tcagacaaaTGTCA--
i equCab2.chr15            I 2 C 0
s cerSim1.JH767782           6805142 21 -  14545593 actaata------------tcagacaaaTGTTA--
i cerSim1.JH767782         I 1156 C 0
s felCat8.chrA3            134102760 21 + 140925898 actaata------------tcagacTAGTATCA--
i felCat8.chrA3            I 2 C 0
s canFam3.chr17             57835627 21 -  64289059 actggtg------------tgagactaaTATCC--
i canFam3.chr17            I 2 C 0
s odoRosDiv1.KB229025        3029317 21 +   4816872 actaatg------------tcaggctaaTATCC--
i odoRosDiv1.KB229025      I 2 C 0
s pteAle1.KB030580          19408730 22 -  23789964 actaacg------------tcagacCGCTCATCT-
i pteAle1.KB030580         C 0 C 0
s loxAfr3.scaffold_20       27614774 33 -  46401353 actaacagtcggaatcgccttgaccaaagcagG--
i loxAfr3.scaffold_20      C 0 C 0
s dasNov3.JH567436           1029223 21 -   2788317 actaaca-------------tggacaaaacaga-c
i dasNov3.JH567436         C 0 C 0
e musFur1.GL896914          13606356 958 -  19722643 I
e ornAna1.Ultra479           3871811 7152 -   6008416 T
e tetNig2.chr13              4300044 851 -  13302670 T
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720588           2493684 338 +   2778784 T
e hapBur1.JH425411           1657068 338 +   1983257 T
e neoBri1.JH422276           4185134 338 -  16571924 T
e araMac1.AOUJ01470298           637  0 -       895 I
e takFla1.KE120500            511214 428 +    663757 T
e fr3.chr9                   3741472 428 -  13922460 T
e ficAlb2.chr1A             24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195       44258 5209 +     59083 T
e pseHum1.KB221193           9789407 578 +  32995986 T
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375358           1019718 687 +   1462937 T
e allMis1.JH737798             80260 1661 +    106177 T
e falPer1.KB391107           2216004 600 -   3101084 T
e falChe1.KB398074           4263387 600 -   7151304 T
e macEug2.GL059506              6470  0 +     21939 I
e galGal4.chr1              24067632 542 + 195276750 T
e geoFor1.JH739914           5157724 543 -   7168866 T
e melGal1.chr1              24929349 4997 + 204065131 T
e anaPla1.KB742960            141378  0 +    531124 I
e amaVit1.KB277496              7625 3737 -     10329 T
e apaSpi1.KB929668           5961501 297 -  12308914 T
e cheMyd1.KB478633           2433836 723 +   6037886 T
e chrPic2.chr2              18523590 544 -  68452538 T
e pelSin1.JH211373           2650239  0 -   4257854 I
e calJac3.chr14             99336234 1612 + 108792865 I
e melUnd1.JH556589           7680049 6397 -   7952740 T
e taeGut2.chr3              13879677 44 - 112617285 I
e triMan1.JH594629           9961901 185 +  24341844 I
e rheMac3.chr8              61693383 6467 + 150158102 T
e macFas5.chr8              58367217 6565 + 146850525 T
e saiBol1.JH378126          24002667 1293 +  27210278 I
e chlSab2.chr8              53287758 6649 + 139301422 T
e panTro4.chr8              55025844 24898 + 143986469 T

a score=-1007.000000
s hg38.chr8_KI270814v1_alt         81388 11 +    141812 TT---AATTTTCAG
s ponAbe2.chr8                  59050938 11 + 153482349 TT---AATTTTCAA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48124491 11 + 100215132 TT---AATTTTCAA
i nomLeu3.chr16                C 0 C 0
s otoGar3.GL873541              21183648 14 -  23169006 CTTACAGCTTTCAA
i otoGar3.GL873541             C 0 C 0
s loxAfr3.scaffold_20           27614807  4 -  46401353 ----------TCTA
i loxAfr3.scaffold_20          C 0 C 0
s dasNov3.JH567436               1029244 14 -   2788317 tttaaaacTTTCTA
i dasNov3.JH567436             C 0 C 0
s sarHar1.chr1_GL834688_random    514962 11 +   3395230 --TTCAATTTTAG-
i sarHar1.chr1_GL834688_random N 0 C 0
e musFur1.GL896914              13606356 958 -  19722643 I
e vicPac2.KB632437              19208049  0 -  22931326 C
e camFer1.KB017763               2802438  0 -   6207710 C
e odoRosDiv1.KB229025            3029338  0 +   4816872 C
e canFam3.chr17                 57835648  0 -  64289059 C
e felCat8.chrA3                134102781  0 + 140925898 C
e ornAna1.Ultra479               3871811 7152 -   6008416 T
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chr1A                 24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195           44258 5209 +     59083 T
e pseHum1.KB221193               9789407 578 +  32995986 T
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375358               1019718 687 +   1462937 T
e allMis1.JH737798                 80260 1661 +    106177 T
e falPer1.KB391107               2216004 600 -   3101084 T
e falChe1.KB398074               4263387 600 -   7151304 T
e macEug2.GL059506                  6470  0 +     21939 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr1                  24929349 4997 + 204065131 T
e anaPla1.KB742960                141378  0 +    531124 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB478633               2433836 723 +   6037886 T
e chrPic2.chr2                  18523590 544 -  68452538 T
e pelSin1.JH211373               2650239  0 -   4257854 I
e calJac3.chr14                 99336234 1612 + 108792865 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr3                  13879677 44 - 112617285 I
e equCab2.chr15                 84031657  0 +  91571448 C
e triMan1.JH594629               9961901 185 +  24341844 I
e pteAle1.KB030580              19408752  0 -  23789964 C
e cerSim1.JH767782               6805163  0 -  14545593 C
e orcOrc1.KB316907              10838118  0 +  17242564 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e saiBol1.JH378126              24002667 1293 +  27210278 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=4417.000000
s hg38.chr8_KI270814v1_alt         81399 3 +    141812 CTA
s ponAbe2.chr8                  59050949 3 + 153482349 CTA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48124502 3 + 100215132 CTA
i nomLeu3.chr16                C 0 C 0
s otoGar3.GL873541              21183662 3 -  23169006 CTG
i otoGar3.GL873541             C 0 C 0
s loxAfr3.scaffold_20           27614811 3 -  46401353 TTG
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9962086 3 +  24341844 CTG
i triMan1.JH594629             I 185 C 0
s dasNov3.JH567436               1029258 3 -   2788317 TTG
i dasNov3.JH567436             C 0 C 0
s sarHar1.chr1_GL834688_random    514973 3 +   3395230 CTA
i sarHar1.chr1_GL834688_random C 0 C 0
e musFur1.GL896914              13606356 958 -  19722643 I
e vicPac2.KB632437              19208049 0 -  22931326 C
e camFer1.KB017763               2802438 0 -   6207710 C
e odoRosDiv1.KB229025            3029338 0 +   4816872 C
e canFam3.chr17                 57835648 0 -  64289059 C
e felCat8.chrA3                134102781 0 + 140925898 C
e ornAna1.Ultra479               3871811 7152 -   6008416 T
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chr1A                 24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195           44258 5209 +     59083 T
e pseHum1.KB221193               9789407 578 +  32995986 T
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375358               1019718 687 +   1462937 T
e allMis1.JH737798                 80260 1661 +    106177 T
e falPer1.KB391107               2216004 600 -   3101084 T
e falChe1.KB398074               4263387 600 -   7151304 T
e macEug2.GL059506                  6470 0 +     21939 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr1                  24929349 4997 + 204065131 T
e anaPla1.KB742960                141378 0 +    531124 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB478633               2433836 723 +   6037886 T
e chrPic2.chr2                  18523590 544 -  68452538 T
e pelSin1.JH211373               2650239 0 -   4257854 I
e calJac3.chr14                 99336234 1612 + 108792865 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr3                  13879677 44 - 112617285 I
e equCab2.chr15                 84031657 0 +  91571448 C
e pteAle1.KB030580              19408752 0 -  23789964 C
e cerSim1.JH767782               6805163 0 -  14545593 C
e orcOrc1.KB316907              10838118 0 +  17242564 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e saiBol1.JH378126              24002667 1293 +  27210278 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=446692.000000
s hg38.chr8_KI270814v1_alt         81402 108 +    141812 CCA-C-CCTGATCCCTGGCACTGTTTCTGCTCTGATGACCACTTAAAGAgtttgctctgggaataaaaactcattcaaatatatttctaagatagataaatatagattct-------------------
s ponAbe2.chr8                  59050952 108 + 153482349 CCA-C-CCTGATCCCTGGCACTGATTCTGCTCTGATGACCACTTAAAGAGTTTGCTCTGGGAATAAAAACTCATTTAAATACATTTCTAAGATAGATAAATATAGATtct-------------------
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48124505 108 + 100215132 CCA-C-CCTGATCCCTGGCACTGATTCTGCTCTGAAGACCACTTAAAGAGTTTGCTCTGGGAATAAAAACTCATTTAAATGTATTTCTAAGATAGATAAATAGAGATtct-------------------
i nomLeu3.chr16                C 0 C 0
s otoGar3.GL873541              21183665 107 -  23169006 ACA-CTCCTGGTTCCTGGGACTGATTCTCTACTGCAGATCACT--AAGAGTTTGCTTTGGGAATAAAAATTCACTAAAATATATTTCTAAGATACATACTTCTAAAGACT-------------------
i otoGar3.GL873541             C 0 I 275
s vicPac2.KB632437              19208049  88 -  22931326 --G-C-CTAGA-CCCTGGGACTGA---CTCTCTGCTTATTGCTT-AGG-GTTTGCTCTGAAAATAAAAACTGATTTAAATACACTCCTAAGATACGCA-------------------------------
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2802438  90 -   6207710 --G-C-CTAGACCCCTGGGACTGA---CTCTCTGCTTATTGCTT-AGGAGTTTGCTCTGAAAATAAAAACTGATTTAAATACACTCCTAAGATATGCA-------------------------------
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10838118  92 +  17242564 ----C-CCCGATCCCTGggactgattcccctctgctgaccactt-aagagtttgctctgggaatagaaacgcattttaatatactcctaaggcatgca-------------------------------
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84031657  95 +  91571448 TAA-C-CCTGATCCCTGAGACTCGTTCTCCTCCACTGACCACTT-AAGACGTTGTTCTGGGAATAACAACGTATTTAAATATACTCCTAAGATACACA-------------------------------
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6805163  93 -  14545593 TAA-C-CCCAATCCCTGAGACTGATTCTCCTCTGTTGACTACTT-AAGAGTTTGTTCTGGAAATAAAAAC--ATTTAAATATACTTCTACAATATACA-------------------------------
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134102781  94 + 140925898 CCT-C-CTTGAT-CCCGGGACTGATTCTCCTCCACTGAGCACTT-AGGAGATCGCTCTGGGAATAAAAATGCGTGTAAGCATACTCCTAAGATGCACT-------------------------------
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57835648  94 -  64289059 TCT-C-CTTGAT-CCTGGGACTGGTTCTGTGCCACTGACCACTG-AAGAGATtgctcagggaataaaaactcgtttaaatatactcctaagatgcaca-------------------------------
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13607314  94 -  19722643 TAT-C-CTCCAT-CCTGTAACTGGTTCTGCTCCGCTGACCAGTT-AGGAGATCGCTCTGGGAATAAAAAGTCATTTAAATAGACTCCTAAGATAGACA-------------------------------
i musFur1.GL896914             I 958 C 0
s odoRosDiv1.KB229025            3029338  94 +   4816872 TAT-C-CTTGAT-CCTGGGACTGGTTCTGCTCCACTGACCACTT-AAGAGATGGCTCTGGGAATAAAAACTCATTTAAATATACTTCTAAAACAGACA-------------------------------
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19408752  87 -  23789964 -------CTGAT-CCTGGGACTGACTGTCCTCCGCTGACCACC---AGAgtttgctctgggaataaaaactcatttaaatatagtcctaaagtacaca-------------------------------
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27614814  84 -  46401353 CCATT-CTGGGTCCCTGGGACTGATTCTCC---TCTGACCACAT-AAGAGTT---TTTATATTTAAAAACTCATTTAAATATATTCCTAAAA-------------------------------------
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9962089  86 +  24341844 CCA-T-CTGGAACCCTGGAACTGATTCTCCTCTTCTGACCACAT-AAGAGTT---TTTATAGTTAAAAACTCATTTAAATATATTTCTAAAA-------------------------------------
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1029261  87 -   2788317 TCA--------CCCCTG--ACTGATTCTCTTCCTCTAACCACTT-AAAAGTTTGCTCTGGGAATAAAAACTCATTTAAATATATTCCTAAGATATATA-------------------------------
i dasNov3.JH567436             C 0 I 7
s sarHar1.chr1_GL834688_random    514976 102 +   3395230 ------------GCCTCCGCATGTGGCTTCGTCCATTGCCAGTT-AATG--TTGATCTAGCAAACACAACtactcaaaatatttctttaagttaGACA------------TATTTTTGAACACAAAACT
i sarHar1.chr1_GL834688_random C 0 C 0
e ornAna1.Ultra479               3871811 7152 -   6008416 T
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637   0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chr1A                 24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195           44258 5209 +     59083 T
e pseHum1.KB221193               9789407 578 +  32995986 T
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375358               1019718 687 +   1462937 T
e allMis1.JH737798                 80260 1661 +    106177 T
e falPer1.KB391107               2216004 600 -   3101084 T
e falChe1.KB398074               4263387 600 -   7151304 T
e macEug2.GL059506                  6470   0 +     21939 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr1                  24929349 4997 + 204065131 T
e anaPla1.KB742960                141378   0 +    531124 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB478633               2433836 723 +   6037886 T
e chrPic2.chr2                  18523590 544 -  68452538 T
e pelSin1.JH211373               2650239   0 -   4257854 I
e calJac3.chr14                 99336234 1612 + 108792865 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr3                  13879677  44 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e saiBol1.JH378126              24002667 1293 +  27210278 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=13452.000000
s hg38.chr8_KI270814v1_alt         81510 124 +    141812 atcgatctatatctatcatctgtctatc--------tatctatctatctatctatctatctat--ctatctatctatc-----------------tatg-tatcta------------tttatctttataaaggctaagctcctgc--tggaatt--------aacaaacattc
s ponAbe2.chr8                  59051060 105 + 153482349 atcgatctatatctatc-------tatc--------tatctatctatctatctatctatctat--ctatctatctatc-----------------tat-------------------------ctTTATAAAGGCTAAGCTCCTGC--TGGAATT--------AACAAACATTC
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48124613 115 + 100215132 atcgatctatatctatc-------tatctat-----tatctatctatctatctatctatctat--ctatctatctatc-----------------tat------ca------------tctatctTTATAAAGGCTAAGCTCCTGC--TGGAATT--------AACAAACATTC
i nomLeu3.chr16                C 0 C 0
s vicPac2.KB632437              19208137  48 -  22931326 ----------------------------------------------------------------------------------------------------------------------------TCTATAAAGACTAAGCTCCTGC--TATAATTAACAAATTAACAAACATTC
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2802528  48 -   6207710 ----------------------------------------------------------------------------------------------------------------------------TCTATAAAGACTAAGCTCCTGC--TATAATTAACAAATAAACAAACATTC
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10838210  48 +  17242564 ----------------------------------------------------------------------------------------------------------------------------tctacaaagactaggctcctac--tgtaattaacaaattaacaaacgttc
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84031752  44 +  91571448 ----------------------------------------------------------------------------------------------------------------------------TTTATAAAGGCTAAGCTCCTCC--TGCAATTAAGA----AACAAACATTC
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6805256  44 -  14545593 ----------------------------------------------------------------------------------------------------------------------------TTTATAAAGGCTAAGCTCCTGC--TGCAATTAATA----AACAAACATTC
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134102875  36 + 140925898 ----------------------------------------------------------------------------------------------------------------------------TGTCTAAAAGCTGAACGCCTGC--TGCAATT------------AACATTC
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57835742  40 -  64289059 ----------------------------------------------------------------------------------------------------------------------------attctaaaagttaaactcccgt--tgcaatt--------aataaacgttc
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13607408  40 -  19722643 ----------------------------------------------------------------------------------------------------------------------------CTTCTAAAAGCTAGACCCCCAC--TGCAATC--------CACAAACATTC
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3029432  40 +   4816872 ----------------------------------------------------------------------------------------------------------------------------TTTCTACAAGCTAAACTCCCGC--TGCAATT--------AACAAACATTC
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19408839  44 -  23789964 ----------------------------------------------------------------------------------------------------------------------------ctcaaaaaggctaagctcccgc--TATCGTTAACA----AACAAACATTC
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27614898  46 -  46401353 ----------------------------------------------------------------------------------------------------------------------TACAGGTTTCTAAAGGGTAAGCTCCTGC--TGCAGTT--------AACAAAGATGT
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9962175  50 +  24341844 ----------------------------------------------------------------------------------------------------------------------TATGTATTTATAAAGGCTAACCTCCTGC--TGCAGTTAACA----AACAAAGACGT
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1029355  55 -   2788317 ---------------------------------------------------------------------------------------------------------AG---GTGTGTT-TATATATTTATAAAGGCTAAGCTCCTGC--TGCAATT--------AACAAACATTC
i dasNov3.JH567436             I 7 C 0
s sarHar1.chr1_GL834688_random    515078 137 +   3395230 -----------------------------ACCGCCAAAACCAGTCAccagattttgttattattgttgtttgtccttcatcttCAAGGAGAGTGATGTGATATCTAGATTGTgtatgaaatatatttgaatgAGGTGGAGCTGTGCAAAGTAATC--------AATttacataa
i sarHar1.chr1_GL834688_random C 0 C 0
e ornAna1.Ultra479               3871811 7152 -   6008416 T
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637   0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chr1A                 24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195           44258 5209 +     59083 T
e pseHum1.KB221193               9789407 578 +  32995986 T
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375358               1019718 687 +   1462937 T
e allMis1.JH737798                 80260 1661 +    106177 T
e falPer1.KB391107               2216004 600 -   3101084 T
e falChe1.KB398074               4263387 600 -   7151304 T
e macEug2.GL059506                  6470   0 +     21939 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr1                  24929349 4997 + 204065131 T
e anaPla1.KB742960                141378   0 +    531124 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB478633               2433836 723 +   6037886 T
e chrPic2.chr2                  18523590 544 -  68452538 T
e pelSin1.JH211373               2650239   0 -   4257854 I
e calJac3.chr14                 99336234 1612 + 108792865 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr3                  13879677  44 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21183772 275 -  23169006 I
e saiBol1.JH378126              24002667 1293 +  27210278 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=39525.000000
s hg38.chr8_KI270814v1_alt         81634 6 +    141812 -caaaat
s ponAbe2.chr8                  59051165 6 + 153482349 -CAAAAT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48124728 6 + 100215132 -CAAAAT
i nomLeu3.chr16                C 0 I 4735
s otoGar3.GL873541              21184047 6 -  23169006 -taaaat
i otoGar3.GL873541             I 275 I 27
s vicPac2.KB632437              19208185 6 -  22931326 -CAAAAT
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2802576 6 -   6207710 -CAAAAT
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10838258 6 +  17242564 -taaaat
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84031796 6 +  91571448 -CAAAAT
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6805300 6 -  14545593 -CAAAAT
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134102911 6 + 140925898 -TGAAAT
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57835782 6 -  64289059 -tgaagt
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13607448 6 -  19722643 -TGAAGT
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3029472 6 +   4816872 -TGAAGT
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19408883 6 -  23789964 -CCAAAT
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27614944 6 -  46401353 -CAACAT
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9962225 6 +  24341844 -AAAAAT
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1029410 6 -   2788317 -CAAAAT
i dasNov3.JH567436             C 0 C 0
s sarHar1.chr1_GL834688_random    515215 6 +   3395230 atgaat-
i sarHar1.chr1_GL834688_random C 0 C 0
e ornAna1.Ultra479               3871811 7152 -   6008416 T
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chr1A                 24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195           44258 5209 +     59083 T
e pseHum1.KB221193               9789407 578 +  32995986 T
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375358               1019718 687 +   1462937 T
e allMis1.JH737798                 80260 1661 +    106177 T
e falPer1.KB391107               2216004 600 -   3101084 T
e falChe1.KB398074               4263387 600 -   7151304 T
e macEug2.GL059506                  6470 0 +     21939 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr1                  24929349 4997 + 204065131 T
e anaPla1.KB742960                141378 0 +    531124 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB478633               2433836 723 +   6037886 T
e chrPic2.chr2                  18523590 544 -  68452538 T
e pelSin1.JH211373               2650239 0 -   4257854 I
e calJac3.chr14                 99336234 1612 + 108792865 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr3                  13879677 44 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e saiBol1.JH378126              24002667 1293 +  27210278 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=320433.000000
s hg38.chr8_KI270814v1_alt         81640 100 +    141812 aaaaaag---tgccttctggatt-agc-ttgctgttGATTGCTTA------------CAGGG-AATCACGAAC-TGGCCAAAACCAGTTTCAATAC---CTGTCGCAAGT----ATTA-CCCACGCA
s ponAbe2.chr8                  59051171 100 + 153482349 CAAAAAG---TGCCTTCTAGATT-AGC-TTGCTGTTGATTGCTTA------------CAGGG-AATCACGAAC-TGGCCAAAACCAATTTCAATAC---CTGTCACAAGT----ATTA-CCCACGTA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48129469 100 + 100215132 aaAAAAG---TGCCTTCTGGATT-AGC-TTGCTGTTGATTGCTTA------------CAGGG-AATCACGAAC-TGGCCAAAACCAGTTTCAGTAC---CTGTCACAAGT----ATTA-CCCACACA
i nomLeu3.chr16                I 4735 C 0
s otoGar3.GL873541              21184080 100 -  23169006 CAAAAAG---CAAAGTCTGGATT-AGCTTTGTTGCTGATTGCTTA------------CAGGG-AACTAAGAGC-T-ACCAAAACCAATTTTGATGC---CTATCACAAAT----ATCA-CCAGTGCA
i otoGar3.GL873541             I 27 C 0
s vicPac2.KB632437              19208191  98 -  22931326 CAGAAGG---TGCT-TTACAATT-AGCTTCGCTGTTGAC-GCTTA------------CAGGG-ACTCAAGAGC-CGGCCGAACGCGGTCTCAGCAC---ATGTCACAAAT----AGCG-C-CCTGCA
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2802582  98 -   6207710 CAAAAGG---TGCC-TTACGATT-AGCTTCGCTGTTGAC-GCTTA------------CAGGG-ACTCAAGAGC-CGGCCGAACGCGGTCTCAGCAC---ATGTCACAAAT----AGCG-C-CCTGCG
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10838264 100 +  17242564 caaaaag---tgcc-ttttgatg-agctctgctgtGGACTGCTTA------------CAGGG-AATCGAGAGC-TGGCTGAACCTAGTTTCAACAC---CTGTCACAAGT----ATCACC-CCTGCA
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84031802 101 +  91571448 CAAAAAG---TGCCTTTTGGATT-AGCTTTGCTGTTGACTGCTCA------------CAGGG-AATCAAGATC-TGGCTGAACTCAGTTTCAATAC---CTGTCATAAAT----ATCA-CCCATGCT
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6805306 101 -  14545593 CAAAAAG---TGCCTTTTAGATT-AGCTTTGCTGTTGACTGCTCA------------TGGGG-AATCAAGATC-TGGCTGACCCCAGTCTCAATAT---CTGTCACAAAC----ATCA-CTCATGCA
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134102917 112 + 140925898 CAACAAG---CGCC-TGTGCAAC-AGCCCTGCGGTTGACTGCTCCGTTGACTGCTCACAGGG-AATCGAGAGCAAGGCTGAGC-CAGCGACAGTGC---CTGTCACAAAC---GGTAC-C-CGTGCA
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57835788  99 -  64289059 c-aaaag---tgccttgtggttc-agctttgctgtGGAGTGCTCC------------CAGGGTGCCGGAGAGC-AGGCTCAGC-CAGTTTTGGGGC---CTGTCACAGAC----ATCA-C-CGAGCA
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13607454  97 -  19722643 CCAAAAG---TGCCGTGTGGCTT-AGCTCTGCTGCTGTCTGCTCC------------CGGTG-AACTGAGAGC-ACGCTGGGT-CTGATTTAGGAG---CTGTCACGGTC----GTCC-C---CACA
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3029478 100 +   4816872 CAAAAAG---TGCCGTGTGGCTTCAGCTTTGCTGTTGACTGCTCC------------CAGGG-AACAGAGAGC-AGGCTGAGC-CAGTTTCAGTAG---CTGTCACAATC----ATCC-C-CGCGCA
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19408889 100 -  23789964 TTAAAAG---TCCC-TGTGGACT-CGCTTTGCTGTTGACTGCTTA------------CAGGG-AATCGAGAGC-TGGCTGAATCCAGTTTCAAGAC---CGGTCACAAAT----ATCA-CATGTGCA
i pteAle1.KB030580             C 0 I 20
s loxAfr3.scaffold_20           27614950 104 -  46401353 CAAAGAGAAATGCCTTTTGGATT-AGCTTTGCTGTTGATCGCTTA------------GAGGG-AATCAAGAGC-TGGTTGAAGCCAGTTTCAATAG---CTGTCACAAAT----ATCA-CCCATGCA
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9962231 104 +  24341844 CAAACAGAACTGCCTTTTGGATT-AGCTTTGCTGTTAACGGCTTA------------AAGGG-ATTCAAGAGC-TGGTTGAAGCCAGTTTCAATAC---CTGCCACAAAT----AACA-TCCACACA
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1029416   8 -   2788317 CAAAAAGA-----------------------------------------------------------------------------------------------------------------------
i dasNov3.JH567436             C 0 C 0
s sarHar1.chr1_GL834688_random    515221  82 +   3395230 -aaaaaa---ttacttttggaTT-----------------CCTTC------------CAGAT-AATCAAGAGT-AAATTGCATATAAAGTTGATTTATGATGTCACAAACCCATATT----------
i sarHar1.chr1_GL834688_random C 0 C 0
e ornAna1.Ultra479               3871811 7152 -   6008416 T
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637   0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chr1A                 24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195           44258 5209 +     59083 T
e pseHum1.KB221193               9789407 578 +  32995986 T
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375358               1019718 687 +   1462937 T
e allMis1.JH737798                 80260 1661 +    106177 T
e falPer1.KB391107               2216004 600 -   3101084 T
e falChe1.KB398074               4263387 600 -   7151304 T
e macEug2.GL059506                  6470   0 +     21939 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr1                  24929349 4997 + 204065131 T
e anaPla1.KB742960                141378   0 +    531124 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB478633               2433836 723 +   6037886 T
e chrPic2.chr2                  18523590 544 -  68452538 T
e pelSin1.JH211373               2650239   0 -   4257854 I
e calJac3.chr14                 99336234 1612 + 108792865 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr3                  13879677  44 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e saiBol1.JH378126              24002667 1293 +  27210278 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=52877.000000
s hg38.chr8_KI270814v1_alt         81740 13 +    141812 TTTTGTAAATTTA
s ponAbe2.chr8                  59051271 13 + 153482349 TTTTGTAAATTTA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48129569 13 + 100215132 TTTTGTACGTTTA
i nomLeu3.chr16                C 0 C 0
s otoGar3.GL873541              21184180 13 -  23169006 CCATGTACATTTA
i otoGar3.GL873541             C 0 I 305
s vicPac2.KB632437              19208289 13 -  22931326 TCGTGTACACTTA
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2802680 13 -   6207710 TCGTGCACACTTA
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10838364 13 +  17242564 TTGTGGACACTCA
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84031903 13 +  91571448 TTTTACACATTTA
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6805407 13 -  14545593 TTCTGTACATTTA
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134103029 13 + 140925898 CCATGCACACTTA
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57835887 13 -  64289059 CTTGGCACATCTA
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13607551 13 -  19722643 CTGTAAACGCGGA
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3029578 13 +   4816872 CTCTGCACATCGA
i odoRosDiv1.KB229025          C 0 C 0
s loxAfr3.scaffold_20           27615054 13 -  46401353 TTTTGTAAATTTC
i loxAfr3.scaffold_20          C 0 I 1
s triMan1.JH594629               9962335 13 +  24341844 TTTTGTAAATTTA
i triMan1.JH594629             C 0 I 1
s sarHar1.chr1_GL834688_random    515303 13 +   3395230 TGACataaattta
i sarHar1.chr1_GL834688_random C 0 C 0
e ornAna1.Ultra479               3871811 7152 -   6008416 T
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chr1A                 24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195           44258 5209 +     59083 T
e pseHum1.KB221193               9789407 578 +  32995986 T
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375358               1019718 687 +   1462937 T
e allMis1.JH737798                 80260 1661 +    106177 T
e falPer1.KB391107               2216004 600 -   3101084 T
e falChe1.KB398074               4263387 600 -   7151304 T
e macEug2.GL059506                  6470  0 +     21939 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr1                  24929349 4997 + 204065131 T
e anaPla1.KB742960                141378  0 +    531124 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB478633               2433836 723 +   6037886 T
e chrPic2.chr2                  18523590 544 -  68452538 T
e pelSin1.JH211373               2650239  0 -   4257854 I
e calJac3.chr14                 99336234 1612 + 108792865 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr3                  13879677 44 - 112617285 I
e dasNov3.JH567436               1029424  0 -   2788317 C
e pteAle1.KB030580              19408989 20 -  23789964 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e saiBol1.JH378126              24002667 1293 +  27210278 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=50288.000000
s hg38.chr8_KI270814v1_alt         81753 50 +    141812 AATCCTAAGTTTGCAC-CACT-TT-GAGAGG-GAAACAAATTCCTTGTAG-TATG
s ponAbe2.chr8                  59051284 50 + 153482349 AATCCTAAGTTTGCAC-CACT-TT-GAGAGG-GAAACAAATTCCTTGTAG-TATG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48129582 50 + 100215132 AATCCTAAGTTTGTAC-CACT-TT-GAGAGG-GAAACAAATTCCTTGTAG-TATG
i nomLeu3.chr16                C 0 C 0
s otoGar3.GL873541              21184498 51 -  23169006 aaACCTAGGTTTGCAC-TGCTGTT-GTGAGA-AAAACAAATGCCATCTAG-CACC
i otoGar3.GL873541             I 305 C 0
s vicPac2.KB632437              19208302 49 -  22931326 GGACACAAGTCTGCGC-AGCC-AC-GGGGGGAAACAGA--TGCCACTGTG-CACA
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2802693 49 -   6207710 GGACATAAGTCTGCGC-AGCC-AC-GGGGGGAAACAGA--TGCCCCTGTG-CACA
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10838377 51 +  17242564 AAACATAAGTCTGCCT-GGCT-AC-AGGAGGGAACACAAGTGCCACCACG-CTCA
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84031916 51 +  91571448 AAACACAAGTCTGCAC-TGCT-GT-AAGACGAAACACAAATGCCGTCAAG-CTCA
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6805420 51 -  14545593 AAACAGAGGTCTGCAC-TGCT-AT-AAGAGGGAACACAAATGCCATAAAG-CACA
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134103042 44 + 140925898 AAACTCAGGTCTGCACCTGCT-AT--------GGCACAGACGCTGTCGAG-TAC-
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57835900 44 -  64289059 AAACTGAAGTCTGAGC-TGCC-AT--------GGCACAATTGCCAAGGAG-CACG
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13607564 43 -  19722643 AAGCTGAAGTCTGCAC--GGC-CT--------TGCACGCGCGCCATCAAA-CTCA
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3029591 44 +   4816872 AAGCTGAAGTCTGCAC-AGGC-TT--------GGCACATGCACCGTCAAG-CTCA
i odoRosDiv1.KB229025          C 0 C 0
s loxAfr3.scaffold_20           27615068 50 -  46401353 AAAGGTAAGTCTGCAT-TGCT-CT-AAGAGAGAACATACCTTCCATCAAG--AAA
i loxAfr3.scaffold_20          I 1 C 0
s triMan1.JH594629               9962349 43 +  24341844 AA----AAGTTTGCAT-TGCT-CT-AAGAGGGAACACACCTTC---CAAG--AAA
i triMan1.JH594629             I 1 C 0
s sarHar1.chr1_GL834688_random    515316 46 +   3395230 -------agttttaat-taCC-TCCCAGAGCTTGAACACATTTTATCAAAATACA
i sarHar1.chr1_GL834688_random C 0 C 0
e ornAna1.Ultra479               3871811 7152 -   6008416 T
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chr1A                 24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195           44258 5209 +     59083 T
e pseHum1.KB221193               9789407 578 +  32995986 T
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375358               1019718 687 +   1462937 T
e allMis1.JH737798                 80260 1661 +    106177 T
e falPer1.KB391107               2216004 600 -   3101084 T
e falChe1.KB398074               4263387 600 -   7151304 T
e macEug2.GL059506                  6470  0 +     21939 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr1                  24929349 4997 + 204065131 T
e anaPla1.KB742960                141378  0 +    531124 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB478633               2433836 723 +   6037886 T
e chrPic2.chr2                  18523590 544 -  68452538 T
e pelSin1.JH211373               2650239  0 -   4257854 I
e calJac3.chr14                 99336234 1612 + 108792865 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr3                  13879677 44 - 112617285 I
e dasNov3.JH567436               1029424  0 -   2788317 C
e pteAle1.KB030580              19408989 20 -  23789964 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e saiBol1.JH378126              24002667 1293 +  27210278 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=275594.000000
s hg38.chr8_KI270814v1_alt         81803 166 +    141812 -AGGCAGCTT------------CCAGGAGTAGCCAATCCTCA----GGCAGA-------GG-TGGGAACC---G---CTTC---------CATAT--GCCATTTGTATG-CATGCACTTGCAAGCAAGGCACAAAAAT-AAAAAGGCTGTGAGC----AAAGACCTTTATGATT---------GAT----GGTCTCT-------------GATC-TC-----GGAAAAATACTCTTGAGAGTG--TTT
s ponAbe2.chr8                  59051334 166 + 153482349 -AGGCAGCTT------------CTAGGAGTAGCCAATCCTCA----GGCAGA-------GG-TGGGAACT---G---CTTC---------CACAT--GCCATTTGTATG-CATGCACTTGCAAGCAAGGCACAAAAAT-AAAAAGGCTGTGAGC----AAAGACCTTTTTGATT---------TAT----GGTCTCT-------------GATC-TC-----AGAAAAATACTCTTGAGAGTG--TTT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48129632 168 + 100215132 -AGGCAGCTT------------CCAGGAGTAGCCAATCCTCA----GGCAGA-------GG-TGGGAACT---G---CTTC---------CATAT--GCCATTTGTATG-CATGCACTTGCAAGCAATGCACAAAAAT-AAAAAGGCTGTTAGC----AAAGACCTTTATGATT---------GAT----GGTCTCT-------------GATC-TC-----AGAAAAATACTCTTCAGAGTGTTTTT
i nomLeu3.chr16                C 0 C 0
s otoGar3.GL873541              21184549 172 -  23169006 -AG--AGCCTTCACTGGCATTGCCAAGAGCAG-CAGCCGTTA----GGCAGA-------GG-TGGGAGCT---G---TCTC---------TGCAC--ACCA-TTGTATA-CACACACATACAAGCAAGATCTAGAAATGAAAAAAGGTGCAAGC----AAAGGCCTTCACCCTT---------GAT----GGTATCT-------------GACC-TC-----AG-CGAGTGCTC-TGAGAGA---TTT
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19208351 178 -  22931326 -AGG-GGCTT-TGCCGTCACAGCCAGGAGGAGCGAGCTCTCA----GGCAGA-------GGTGGGGAACT---G---CTTC---------CACAA--GCTGTTTCTACA-----GACTCACAAGCAAGGCG------G-AAAAGGGCTGGAAGC----AGAGGCCTGCATCACT---------GGCCTTCGATGCTT--TCCAT-CCCTAAGCC-TCCAGT-AGAGAAACGTTTT---GAGT------
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2802742 178 -   6207710 -AGG-GGCTT-TGCCGTCACCGCCAGGAGGAGCGAGCTCTCA----GGCAGA-------GGTGGGGAACT---G---CTTC---------CACAA--GCTGTTTCTACA-----GACTCGCAAGCAAGGTG------G-AAAAAGGCTGGAAGC----AGAGGCCTGCATGACT---------GGCCTTCGATGCTT--TCCAT-CCCTAAGCC-TCCAGT-AGAGAAACGTTTT---GAGT------
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10838428 170 +  17242564 -C----GCTT-CACTGCCACCGCCCGGAGGAGCGAACCCTCA----GGCCGA-------GG-GGTAAACT---G---TTTC---------CACAA-----------ACA-----GACCCCCAAGCAAGGTAT-----A-AAAAAGGCTGGAAGC----AAAGGCCTGCACGATT---------GGTCTTCGATATTT--TCCAC-CCCTGAGCC-TCCAGC-AGAGAAATGTTCT---GAATG--TCA
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84031967 185 +  91571448 -AGT-GGCTT-CACTGCCACAGCCAGGAGGAATGAAGCCTCA----GGCAGA-------GG-TGGGAAAT---G---TTTC---------CACAT--GCCGTTTTTACA-AACAGACCCACAAGCAAGGCA------T-AAAAAGGCTGGAAGC----AAAAGCCTTCATGCTT---------GGTCTCTGAT-TTC--TCCAT-CCCTAAGCCTTCCAGC-AGAGAAATGTTCT---CAGTG--TCA
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6805471 185 -  14545593 -AGG-GGCTT-CACTGCCAGAGGCAGGAGGCGTGAACCCTCA----GGCAGA-------AG-TGGGAACT---G---TTTC---------CATAT--GCCGTTTTCACA-AACAGACCCACAAGAAAGGCA------T-AAAAAGGCTGGAAGC----AAAAGCCTTCATGCTT---------GGTCTTGAATCTTT--TCCAT-CCCTAAGCC-TCTAGC-AGAGAAATGTTCT---GAGTG--TCA
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134103086 178 + 140925898 -ACG-GGCTT-CCCCGGAACTGCCAGGAGA-GCAAACCCTCA----GGCAGA-------GG-CAGGAGTG---G---TTTC---------CACAG--GCCGTTTTTACA-GAGAGACCCACAAGCAAGGCA------T-AAAAAGGCTGGAGGC----AAAGGCCTTCAGGATT---------GGTTTCTAATATTT--TCCA-------AGCC-TCTGCC-AGGGG-ATGTCCC--AGAGTG--TCA
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57835944 175 -  64289059 -AGG-GGCTC-CATGGGCACTGTCAGGAGA-GGGGACCCTCA----GGCAGA-------GG-TGAGAATG---G---TTTC---------CACAG--GGCTTTCTTCCCCTTCTTACCCACAAGCAAGGCA------T-A------------------AAAGGCCTTCATGATC---------GGTGTCTGGTATTTCCTGCCC-CCCTCAGCC-TCCAGCAAGGGACGTGTCCC--AGGGCA--TCA
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13607607 185 -  19722643 -AGG-GGCTT-CACTACCACTGCCAGGTGA-GTGAACCCTCA----GGCAGA-------GC-TGGGCGTG---G---TTTC---------CAGAGGTGTATTTTTTAGA---AAGACCCACAAGCAAGGCA------T-AAAAAGGCTGGAAGC----AAAGGCCTTCAGGATG---------GGCTTCTGGTATTT--TCTAC-CCCTCGGCC-TCTAGC-AGGGACCCGTCCC--AGAGCA--TCA
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3029635 183 +   4816872 -AGG-GGCTT-CACGGCCACTGCAAGGAGG-GCGAACCCTCA----GGCAGA-------GC-TTGGCATC---G---TGTC---------CAGAG--GCCTTTTTTACA---AAGACCCACAAGCAAGGCA------T-AACAAGGCTGGAAGC----AAAGGCCTTCATGACT---------CGTTTCTGGTATTT--TGCAC-CCCTCAGCC-TCCATC-AGGGACATGTCCC--AGAGCA--TCA
i odoRosDiv1.KB229025          C 0 C 0
s loxAfr3.scaffold_20           27615118 197 -  46401353 -AGG-TGCTT-C-CCGGCACTGCCAAGAGGAGTGAAGCCTCA----GGCAGA-------GA-TGCGAGCT---GTTTTTTC---------CACAG--GCCAATTTTACA-AATGGACCCACAAGTAAGGCC------T-GTAAAGGCTGGGGGC----GGAGGCCTTTGAGATTTGGATGGATGGTCTCTGATACTC--TCCTAGCCCTGTGCC-TAGAGC-AGAAATAGGCTCT---GAGTG--TCT
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9962392 197 +  24341844 -AGG-TGCTT-C-CCGGCACTGCCAAGAGGAATGAAGCCTCA----GGCAGA-------GG-CGTGAGCT---G---TTCC---------CACAG--GCTAATTTTACA-AAGGGACCCACAAGTAAGGCA------T-GTAAAGGCTGAGAGCAGAAAGAAGCCTTTGAGATTTGGATGTATGGTCTCTGGTATTC--TGCCA-CCCTGTGCC-TGCAGC-GGAAATACGCTCT---GAGTG--TCT
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1029424 129 -   2788317 -------------------------------------------------AGA-------GT-CCTAAGCT---G---TTTC---------CAGAT--GCCATTTTTA-----------AACAAGTAAGGCA------T-TAAAAAGCTGGGAGC----AAAGGCCTTCAAGATTTGGATGT------TCTGATATCT--TCCTA----TTAGCC-TCAGGC-AGAAAAATTCTCC---AAG------T
i dasNov3.JH567436             C 0 C 0
s sarHar1.chr1_GL834688_random    515362 194 +   3395230 -AGA-CATTT------ATATTACTAAAAAGAACAAATACTGG----GCTAGATAGATATGC-TAGTAactccag---tttt---------ctcat--atttcttctacA-ATTAAAGTATTGaaaaaaaCC------C-CACCACATTGCTATC----TTACATCTTAGCACTT---------ATTCTAGGATGTTC--TTCTTTCACTaagta-tgaaaaaagaaagaagacagacaCAGTG--TC-
i sarHar1.chr1_GL834688_random C 0 C 0
s xenTro7.KB021653              64099978 166 - 140444050 AAGC-AGCTT---------TTATAGAAATAGACATTTTCTCAGCTTGTCAGA-------GG--GACATCT---C---TGTCGCCGCAATACACAT--GCCATTTGTGCA---------TACAAACAGGGAA------G-AA------TGGTA-C----AAAAATATACATGCCC---------TTT-----GTGCAT--ACTAA-ACTGGGGTA-AACAGT-AGTAAAACATGCC-------A--TCT
i xenTro7.KB021653             N 0 C 0
e ornAna1.Ultra479               3871811 7152 -   6008416 T
e tetNig2.chr13                  4300044 851 -  13302670 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637   0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chr1A                 24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195           44258 5209 +     59083 T
e pseHum1.KB221193               9789407 578 +  32995986 T
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375358               1019718 687 +   1462937 T
e allMis1.JH737798                 80260 1661 +    106177 T
e falPer1.KB391107               2216004 600 -   3101084 T
e falChe1.KB398074               4263387 600 -   7151304 T
e macEug2.GL059506                  6470   0 +     21939 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr1                  24929349 4997 + 204065131 T
e anaPla1.KB742960                141378   0 +    531124 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB478633               2433836 723 +   6037886 T
e chrPic2.chr2                  18523590 544 -  68452538 T
e pelSin1.JH211373               2650239   0 -   4257854 I
e calJac3.chr14                 99336234 1612 + 108792865 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr3                  13879677  44 - 112617285 I
e pteAle1.KB030580              19408989  20 -  23789964 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e saiBol1.JH378126              24002667 1293 +  27210278 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=34134.000000
s hg38.chr8_KI270814v1_alt         81969 13 +    141812 GTCTTGTTGTCTT
s ponAbe2.chr8                  59051500 13 + 153482349 GTCTTGCTGTCTT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48129800 13 + 100215132 GTCTTGCTCTCTT
i nomLeu3.chr16                C 0 C 0
s otoGar3.GL873541              21184721 13 -  23169006 ATACTGCCGTGTC
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19208529 12 -  22931326 -TTCTGCCATCTT
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2802920 12 -   6207710 -TTCTGCCACCTT
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10838598 13 +  17242564 GTCCTGACATTCT
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84032152 12 +  91571448 G-CCTGCGATTTT
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6805656 13 -  14545593 GCCCTGCCATTTC
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134103264 10 + 140925898 GCACTGT---TTC
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57836119 10 -  64289059 GTGCTAC---TTC
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13607792 13 -  19722643 GTGCTGCCCTTTC
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3029818 13 +   4816872 GTGCTGCCATTTC
i odoRosDiv1.KB229025          C 0 C 0
s loxAfr3.scaffold_20           27615315 13 -  46401353 GTCCTGCCATTTT
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9962589 13 +  24341844 GTCCTGCCATTTC
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1029553 13 -   2788317 GTCCTACCATTTC
i dasNov3.JH567436             C 0 C 0
s sarHar1.chr1_GL834688_random    515556 11 +   3395230 --CCtatccctct
i sarHar1.chr1_GL834688_random C 0 I 2
s xenTro7.KB021653              64100144  1 - 140444050 G------------
i xenTro7.KB021653             C 0 I 2
s tetNig2.chr10                  6371751 13 +  13272281 GTTTTGTTGTGTC
i tetNig2.chr10                n 851 C 0
e ornAna1.Ultra479               3871811 7152 -   6008416 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chr1A                 24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195           44258 5209 +     59083 T
e pseHum1.KB221193               9789407 578 +  32995986 T
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375358               1019718 687 +   1462937 T
e allMis1.JH737798                 80260 1661 +    106177 T
e falPer1.KB391107               2216004 600 -   3101084 T
e falChe1.KB398074               4263387 600 -   7151304 T
e macEug2.GL059506                  6470  0 +     21939 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr1                  24929349 4997 + 204065131 T
e anaPla1.KB742960                141378  0 +    531124 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB478633               2433836 723 +   6037886 T
e chrPic2.chr2                  18523590 544 -  68452538 T
e pelSin1.JH211373               2650239  0 -   4257854 I
e calJac3.chr14                 99336234 1612 + 108792865 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr3                  13879677 44 - 112617285 I
e pteAle1.KB030580              19408989 20 -  23789964 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e saiBol1.JH378126              24002667 1293 +  27210278 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=92489.000000
s hg38.chr8_KI270814v1_alt         81982 56 +    141812 CTCCTCC-----CCAAGGCAAG--GGTTG-AGG------C------------------------TGCAGGATGGAGTGG-AGCA--GAGATGTGTTG-
s ponAbe2.chr8                  59051513 56 + 153482349 CTCCTCC-----CCAAGGCAAG--GGTTG-AGG------C------------------------TGCAGGATGGAGTGG-AGCA--GAGATGTGTTG-
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48129813 56 + 100215132 CTCCTCC-----CCAAGGCAAG--GGTTG-AGG------C------------------------TGCAGGATGGAGTGG-AGCA--GAGATGTGTTG-
i nomLeu3.chr16                C 0 C 0
s otoGar3.GL873541              21184734 50 -  23169006 CTCTGTC-----CCAGGCAAGT--GGGGG-AGG------C------------------------TGCAGGGCAGGGTAG-AGGG--GAGCT-------
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19208541 52 -  22931326 CCCCTCC-----CCAAGGCAAG--GCCTC-AGG------C------------------------TGCAGG-TGGAGT-G-CACA--GAG--GGCCTC-
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2802932 52 -   6207710 CCCCTCC-----CCAAGGCAAG--GCCTC-AGG------C------------------------TGCAGG-TGGAGC-G-CACA--GAG--GGCCTC-
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10838611 53 +  17242564 CCCCTCC-----CCGAGGGGAG--GACTT-GGG------C------------------------CGCCGG-TGGAGCAG-GACA--GAG--GACCTC-
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84032164 54 +  91571448 CCCCTCC-----CCAAAGCAAG--GGCTC-AGG------C------------------------TGCAGGAGAGAGCGG-AGCA--GAG--GAGCTC-
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6805669 54 -  14545593 CCCCTTC-----CCAAGGCAAG--GGCTC-AGG------C------------------------TGCAGGACAGAGCGG-AGCC--GAG--GAGCTC-
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134103274 46 + 140925898 CCTCTCCCTCTCCAGAGGCAAG--GGCTC-AGG------C------------------------TGCAGAC----------------AG--GCACTC-
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57836129 58 -  64289059 CCTCCCC--CCACAAAGGCAAG--GGCTCAAAG------C------------------------TGCAGAACAGAGCAG-AGCA--GAA--CAACTC-
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13607805 57 -  19722643 CCT-CCCGTCCCCAGAGGCAAG--GGCTA-AGG------C------------------------AGCAGAACAGAGTGG--ACC--AAG--GAGCTC-
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3029831 59 +   4816872 CCTCCCCATCCCCAAAGGCAAG--GGCTC-AGG------C------------------------TGCAGAACAGAGTGG-AACT--GAG--GAGCTC-
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19409009 57 -  23789964 -----CTGCCCGCCAAGGCAGG-CAGCTC-AGG------C------------------------TGCAGGACAGAGGGG-AGCAGGGAG--GAGCCC-
i pteAle1.KB030580             I 20 C 0
s loxAfr3.scaffold_20           27615328 55 -  46401353 CCCTGCC-----CC-AAGCAAG--GGCTC-AGG------T------------------------GCACAGAGGTAGCGA-AACAGAGAG--GAGCAG-
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9962602 53 +  24341844 CCCCACC-----CCAAAGCAAG--GGCTC-AGG------T------------------------GCATAGAGGCAGCAG-AGCA---AA--GAGTGC-
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1029566 54 -   2788317 TCCCTCC-----CCAAAGCAAG--GGCTC-AGG------C------------------------TGTGGGGCACAGCAG-AGCAGAGAG--GAGC---
i dasNov3.JH567436             C 0 C 0
s sarHar1.chr1_GL834688_random    515569 62 +   3395230 tcctttc-----ccaggCCAAGATGGTTG-GGGAAGTGCC------------------------AGCAGAAAGCATCAA-AACA--GAA--TAGCTC-
i sarHar1.chr1_GL834688_random I 2 C 0
s xenTro7.KB021653              64100147 79 - 140444050 CTTGCCA-----AACAGGGAAG--GATGG-TAG------CCCCAATACACATGCATTTTGTCCATACAGGGTAGAATGGTAGCT--AAG--ATACAC-
i xenTro7.KB021653             I 2 C 0
s tetNig2.chr10                  6371764 55 +  13272281 GTACACC-----ACAGGGAGGG--TGTTG-TGG------G------------------------TTGCCGATGGGCTGA-GGCA--GAG--TGTgtgg
i tetNig2.chr10                C 0 I 2907
e ornAna1.Ultra479               3871811 7152 -   6008416 T
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chr1A                 24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195           44258 5209 +     59083 T
e pseHum1.KB221193               9789407 578 +  32995986 T
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375358               1019718 687 +   1462937 T
e allMis1.JH737798                 80260 1661 +    106177 T
e falPer1.KB391107               2216004 600 -   3101084 T
e falChe1.KB398074               4263387 600 -   7151304 T
e macEug2.GL059506                  6470  0 +     21939 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr1                  24929349 4997 + 204065131 T
e anaPla1.KB742960                141378  0 +    531124 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB478633               2433836 723 +   6037886 T
e chrPic2.chr2                  18523590 544 -  68452538 T
e pelSin1.JH211373               2650239  0 -   4257854 I
e calJac3.chr14                 99336234 1612 + 108792865 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr3                  13879677 44 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e saiBol1.JH378126              24002667 1293 +  27210278 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-23583.000000
s hg38.chr8_KI270814v1_alt         82038 15 +    141812 CA-----CAGGCCACATGGG
s ponAbe2.chr8                  59051569 15 + 153482349 CA-----CAGGCCACATGGG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48129869 15 + 100215132 CA-----CAGGCCACATGGG
i nomLeu3.chr16                C 0 C 0
s otoGar3.GL873541              21184784  7 -  23169006 -----------CCACATG--
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19208593 15 -  22931326 CC-----CTGGGCACCTGGG
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2802984 15 -   6207710 CC-----CTGGGCACCTGGG
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10838664 15 +  17242564 CC-----CAGGGTGCCTGGG
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84032218 14 +  91571448 CC-----CAAGGTA-CAGGG
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6805723 15 -  14545593 CC-----CAGGGCACCGGGG
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134103320  7 + 140925898 CC-------------CAGGG
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57836187  7 -  64289059 CC-------------CAGGG
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13607862  7 -  19722643 CG-------------GAGGG
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3029890  7 +   4816872 CC-------------CAGGG
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19409066  7 -  23789964 CC-------------TGGGG
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27615383 15 -  46401353 CC-----AGGGGCACTGGGG
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9962655 14 +  24341844 CC-----AGGGGCACC-GGG
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1029620 15 -   2788317 CC-----CAGTGTACTTGGG
i dasNov3.JH567436             C 0 C 0
s sarHar1.chr1_GL834688_random    515631 16 +   3395230 TG----GAAGGATAACTAAG
i sarHar1.chr1_GL834688_random C 0 C 0
s xenTro7.KB021653              64100226 20 - 140444050 ATTCGTGCATACCACACAGG
i xenTro7.KB021653             C 0 N 0
e ornAna1.Ultra479               3871811 7152 -   6008416 T
e tetNig2.chr10                  6371819 2907 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chr1A                 24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195           44258 5209 +     59083 T
e pseHum1.KB221193               9789407 578 +  32995986 T
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375358               1019718 687 +   1462937 T
e allMis1.JH737798                 80260 1661 +    106177 T
e falPer1.KB391107               2216004 600 -   3101084 T
e falChe1.KB398074               4263387 600 -   7151304 T
e macEug2.GL059506                  6470  0 +     21939 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr1                  24929349 4997 + 204065131 T
e anaPla1.KB742960                141378  0 +    531124 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB478633               2433836 723 +   6037886 T
e chrPic2.chr2                  18523590 544 -  68452538 T
e pelSin1.JH211373               2650239  0 -   4257854 I
e calJac3.chr14                 99336234 1612 + 108792865 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr3                  13879677 44 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e saiBol1.JH378126              24002667 1293 +  27210278 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=92510.000000
s hg38.chr8_KI270814v1_alt         82053 60 +    141812 CCTCCTGG--CTGGATAAGC-TCCCCCAC---CTGAG-AGGTGAAGTCTGGGTGGAAGTGC--TCCAGA
s ponAbe2.chr8                  59051584 61 + 153482349 CCTCCTGG--CTGGATGTGC-TCCCCAAC---CTGAGCAGGTGAGGTCTAGGTGGAAGTGC--TCCAGA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48129884 61 + 100215132 CCTCTTGG--CTGGATGAGC-TCTCCCAC---CTGAGCAGGTGAGGTCTAGGTGGAAGTGC--TCCAGA
i nomLeu3.chr16                C 0 C 0
s otoGar3.GL873541              21184791 46 -  23169006 -----------------AGC-ACCCCACA---CTCCGCAGGTGAAGTCTGGGAGGAAGCGC--CCCAGC
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19208608 62 -  22931326 CCTCTGG---CTTGATGAGCATTCCGACT---GTGAGCAGGTGGAACTGGTGTGGCAGCAC-TTCCAGG
i vicPac2.KB632437             C 0 I 2
s camFer1.KB017763               2802999 62 -   6207710 CCTCTGG---CTTGATGAGCATCCCCACT---GTGAGCAGGTGGAACTGGAGTGGCAGCAC-TTCCAGG
i camFer1.KB017763             C 0 I 2
s orcOrc1.KB316907              10838679 62 +  17242564 CCTCTGGC--CTTGGGGAACGTCCCCACC----CGAGCAAGCGGAGCCTGGGGGCACGCAC-TTGCAGA
i orcOrc1.KB316907             C 0 I 53
s equCab2.chr15                 84032232 63 +  91571448 CCTCTTGC--CTTGCTGAGCGTCTGCACA---GTGAGCTGGTAGAATCTGGGTGGAAGCAC-TTTCAAA
i equCab2.chr15                C 0 I 2
s cerSim1.JH767782               6805738 63 -  14545593 CCTCTTGC--CTTGATAAGCGTCCCCACA---CCGAGCAGGTGGAATCTGGGTGGAAGCAC-CTCCTGA
i cerSim1.JH767782             C 0 I 2
s felCat8.chrA3                134103327 42 + 140925898 CCTCCCAC--CTCGATGAGC-----------------------GGACCTGGGAGGAAGCAC--TTCAGA
i felCat8.chrA3                C 0 I 2
s canFam3.chr17                 57836194 42 -  64289059 CCGCCTGC--CTTGATGAGT-----------------------GAATCTGGGTGGAAGCGC--TTCAGA
i canFam3.chr17                C 0 I 2
s musFur1.GL896914              13607869 42 -  19722643 CCTCCTGC--CTTGAGGAAT-----------------------GAGTCTGGGGAGAAGCAC--TTTGCA
i musFur1.GL896914             C 0 I 2
s odoRosDiv1.KB229025            3029897 41 +   4816872 CCTCCTGC--CTTGATGAGT-----------------------GAAT-TCAGTACAAGCAC--TTCAGA
i odoRosDiv1.KB229025          C 0 I 2
s pteAle1.KB030580              19409073 37 -  23789964 GCTCTTGC--CTGGATGAGC-----------------------------AGGTGGAAGCAC-TTCCAGA
i pteAle1.KB030580             C 0 I 2
s loxAfr3.scaffold_20           27615398 63 -  46401353 ACTCTTGA-CCTTGATG-GCGTCCCCACA--ACTAAGCAGGTGAAACCTGGCTGGAAACAT--TTCTAA
i loxAfr3.scaffold_20          C 0 I 1
s triMan1.JH594629               9962669 63 +  24341844 ACTCTTGA-CCTTGATG-GCATCCTCACA--ACTGAGCAAGTGAAATCAGGGTGGAAACAT--TTCAAA
i triMan1.JH594629             C 0 I 4
s dasNov3.JH567436               1029635 58 -   2788317 CCTGTTGA----TGA---GCATCCTCACA--ACAAAACAAGTGAAATTTGGGTGGAAACCC--TTCAAA
i dasNov3.JH567436             C 0 I 3
s sarHar1.chr1_GL834688_random    515647 69 +   3395230 CTTCCTTGACCTCAATAAGTATAATTACTAAAGTAAGTAAGAGGAATCTATTTGAAAACATCTTTCAAA
i sarHar1.chr1_GL834688_random C 0 C 0
e ornAna1.Ultra479               3871811 7152 -   6008416 T
e tetNig2.chr10                  6371819 2907 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chr1A                 24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195           44258 5209 +     59083 T
e pseHum1.KB221193               9789407 578 +  32995986 T
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375358               1019718 687 +   1462937 T
e allMis1.JH737798                 80260 1661 +    106177 T
e falPer1.KB391107               2216004 600 -   3101084 T
e falChe1.KB398074               4263387 600 -   7151304 T
e macEug2.GL059506                  6470  0 +     21939 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr1                  24929349 4997 + 204065131 T
e anaPla1.KB742960                141378  0 +    531124 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB478633               2433836 723 +   6037886 T
e chrPic2.chr2                  18523590 544 -  68452538 T
e pelSin1.JH211373               2650239  0 -   4257854 I
e calJac3.chr14                 99336234 1612 + 108792865 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr3                  13879677 44 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e saiBol1.JH378126              24002667 1293 +  27210278 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-20924.000000
s hg38.chr8_KI270814v1_alt         82113 39 +    141812 ---TAGGTGACATGGCTTCCT----ATCC-ACATCACATGGACACAG---------
s ponAbe2.chr8                  59051645 39 + 153482349 ---TAGGTGACATGGTTTCCT----ATCC-ACATCACATGGACACAG---------
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48129945 39 + 100215132 ---TAGGTGACATGGCTTCCC----ATCC-ACATCACATGGACACAG---------
i nomLeu3.chr16                C 0 C 0
s otoGar3.GL873541              21184837 47 -  23169006 ---CCAGCAGCATAGCTTCCC-AGAACAC-ACAGCACATCAACCCAG----AGGAT
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19208672 22 -  22931326 ---CAGGTGGCTTGGCTTCCC----------------------AGAA---------
i vicPac2.KB632437             I 2 C 0
s camFer1.KB017763               2803063 22 -   6207710 ---CAGGTGGCTTGGCTTCCC----------------------AGAA---------
i camFer1.KB017763             I 2 C 0
s equCab2.chr15                 84032297 21 +  91571448 ---CAGGCGGCTTGGCTTCT-----------------------GTAA---------
i equCab2.chr15                I 2 C 0
s cerSim1.JH767782               6805803 21 -  14545593 ---CAGGTGGCTTGGCTTCC-----------------------ATAA---------
i cerSim1.JH767782             I 2 C 0
s felCat8.chrA3                134103371 22 + 140925898 ---CAGGTGGCTTGGCTCCCC----------------------GGAT---------
i felCat8.chrA3                I 2 C 0
s canFam3.chr17                 57836238 22 -  64289059 ---CAGGTGGCTTGGCTTTCC----------------------GTAG---------
i canFam3.chr17                I 2 C 0
s musFur1.GL896914              13607913 22 -  19722643 ---CAGGTGGCTCAGCTTCCT----------------------GTAG---------
i musFur1.GL896914             I 2 C 0
s odoRosDiv1.KB229025            3029940 21 +   4816872 ---CAGGTGGCTTGGCTTCC-----------------------ACAG---------
i odoRosDiv1.KB229025          I 2 C 0
s pteAle1.KB030580              19409112 20 -  23789964 ---CAGGTGGCCTGGCTTCT------------------------CAT---------
i pteAle1.KB030580             I 2 C 0
s loxAfr3.scaffold_20           27615462 49 -  46401353 ---CAGGCAGC---GCCTCCC-ATAATATGATCCTACACACTTAAACAGAGAGAAT
i loxAfr3.scaffold_20          I 1 C 0
s triMan1.JH594629               9962736 47 +  24341844 ---CAGGCAGC---GCCTCCC-ATAATATGATCTCATGCACTTAAAC--CGAGAAT
i triMan1.JH594629             I 4 C 0
s dasNov3.JH567436               1029696 49 -   2788317 ---TAGGCAGCTTGGCTTCTC-ATAACACACTTTCACATA---ACACAGGAAGAGT
i dasNov3.JH567436             I 3 C 0
s sarHar1.chr1_GL834688_random    515716 47 +   3395230 TGAGAGGcagtttagctttttaaaaataggccCTCATACAATTTAAA---------
i sarHar1.chr1_GL834688_random C 0 C 0
e ornAna1.Ultra479               3871811 7152 -   6008416 T
e tetNig2.chr10                  6371819 2907 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chr1A                 24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195           44258 5209 +     59083 T
e pseHum1.KB221193               9789407 578 +  32995986 T
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375358               1019718 687 +   1462937 T
e allMis1.JH737798                 80260 1661 +    106177 T
e falPer1.KB391107               2216004 600 -   3101084 T
e falChe1.KB398074               4263387 600 -   7151304 T
e macEug2.GL059506                  6470  0 +     21939 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr1                  24929349 4997 + 204065131 T
e anaPla1.KB742960                141378  0 +    531124 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB478633               2433836 723 +   6037886 T
e chrPic2.chr2                  18523590 544 -  68452538 T
e pelSin1.JH211373               2650239  0 -   4257854 I
e calJac3.chr14                 99336234 1612 + 108792865 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr3                  13879677 44 - 112617285 I
e orcOrc1.KB316907              10838741 53 +  17242564 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e saiBol1.JH378126              24002667 1293 +  27210278 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-89626.000000
s hg38.chr8_KI270814v1_alt         82152  89 +    141812 GACATGGTCTG----------------TTATCTCTTA--------------------------------------TGCTGTATGTTTTTCCC-AGTTGACTTCTCATCCT-CCCCCAAGCCACTCACTGACTCCAC---TGGGGC-AAG
s ponAbe2.chr8                  59051684  86 + 153482349 GACATGGTCTG----------------TTATCTCTTA--------------------------------------TGCTGTATGTTTTTCCT-AGCTGACTTCTCATCCT-CCCCCAAGCCAGTCACTGACTC------TGGAAC-AAG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48129984  89 + 100215132 GACATGGTCTG----------------TTATCTCTTA--------------------------------------TGCTGTATGTTTTTCCT-AGCTGACTTCTCATCCT-CCCCCAAGCCAGTCACTGACTCCAC---TGGGAC-AAG
i nomLeu3.chr16                C 0 C 0
s otoGar3.GL873541              21184884  90 -  23169006 GACATGGACTG----------------GTGTCCCTCA--------------------------------------AGCTGCTTCGTTTTCC--AGCAGAATTCTCATCCCAACCTCAAGGCAGTCACTGACTCCAT---GGGTATGAGG
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19208694  79 -  22931326 ---------------------------CCAGCTCTCA-----AGGCTCTCAGTG------GCGGGAC-------CA--------------C--AGCTGACGTCTCACTGC-CCCTCC----CGGCTCGGATTCCGC---TGGTAC-AAG
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2803085  80 -   6207710 ---------------------------CCAGCTCTCA-----AGGCTCACAGTG------GGGGGAC-------CA--------------C--AGGTGACATCTCACTGC-CCCTCC---TCGGCTTGGATTCCAC---TGGTAC-AAG
i camFer1.KB017763             C 0 C 0
s equCab2.chr15                 84032318  99 +  91571448 TATGCTCT-------------------CACACACTTACGCAGAGA---------------GGACGAC-------AAGCTGCATTTTTTCCC--AGGTGACGTCCCACAGC-CCGTCCC--TGATCATGGATTCCAT---TGGTAC-AAT
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6805824  98 -  14545593 TACGCTCT-------------------CACACACTTACACACAG----------------GCACCAC-------ACGCTGCATTTTTTTCC--AGGTGACTTCTCACAGC-CCCTCTG--CCATCATGGATTCCAT---TGGTAC-AAT
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134103393 107 + 140925898 GCCCTCTGTCA------CTCACGCCCGTGTGCACCCA------GACCCACA---------AGGGGAC-------CAGCTGCATTTTTTTCC--AGCTGACTTCTCCCTGG-CC-TCC------TCATGGATTCCAC---TGGTAT-AAT
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57836260 110 -  64289059 TATGTCct-ca------ctcactcattcactcactca--cAGACACCCAC----------AGGGGAC-------CGGCTGCAGTTTTTTCC--AGCTGACTTCTCCCTGG-CCTTCC------TCATGAATTCCAC---TGGTAT-AAT
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13607935  97 -  19722643 AACGTGGTTCA----------------CACTCTCTCACTCAGA---CCAC----------GAGGGCC-------CAGCTGCAGG-TTTTCT--AGCTG-CTTCTCCCTGG-CCCTCC------TCACAGATTCCA----TGGTAA-AAT
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3029961 119 +   4816872 TATGTAGTGCGCTTGCTctccctccctccctccctcactcAGAGACCCAC----------AGGGGAC-------CAGCTGCAGGTTTTTCC--AGCTGACTTCTCCCTGG-CCCTCC------TCATGGCTTCCAC---TGCTAT-AAT
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19409132 105 -  23789964 CATGCCAT-------------------CCCTCACTCA--GAGAGGACAACAGCGGAC---AGACGAC-------AAGCTGCATT-TTCCCC--AGCTGACTTCTCACTGC-CTCTCCG-----TCACTGATGCCAT---TGGTAC-AAC
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27615511  86 -  46401353 TACATGGACTG----------------CCATCTCTCA--------------------------------------GGCTGCATT-TTTTCC--AGCTGGCTTCTTACTCC-CCATCC-CTAGTTCACTGACTCTAT---CAGTAC-AAT
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9962783  86 +  24341844 TACATGGACTG----------------TCATCTCTCA--------------------------------------GGCTGGATT-TTTTCC--AGCTGGCTTCTCATTCC-CCATCC-CCAGGTCACTGACTCTGT---TGGTAC-AAT
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1029745  84 -   2788317 CCCGTGGACCA----------------TCATCTCTCA--------------------------------------AGCTGGGCT-TCCTC----GCTGGCTGCCCACTGC-CCCTCC-CTCAGTCACTGACTCCAC---TGGTAC-AAT
i dasNov3.JH567436             C 0 I 7
s sarHar1.chr1_GL834688_random    515763  89 +   3395230 TAGGAACT-------------------TTATATCATA-----------------------g--------------tgttccctttctcccctcaaaCGGCCTTTGCCTTT-TGTTCC--TTTGCCTATGACCTGATAAGGGGCAC-AGG
i sarHar1.chr1_GL834688_random C 0 C 0
s xenTro7.KB021651              44921087  84 + 117219152 ------------------------------------------------------GACATGGGAGGGTGTCAGTGCCGCTGTGTCCTCCCAT--GTCAATCACATCAATGC-CAAACC----ACCCACTGTCATTGC---TGGGGA-CAG
i xenTro7.KB021651             N 0 C 0
e ornAna1.Ultra479               3871811 7152 -   6008416 T
e tetNig2.chr10                  6371819 2907 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637   0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chr1A                 24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195           44258 5209 +     59083 T
e pseHum1.KB221193               9789407 578 +  32995986 T
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375358               1019718 687 +   1462937 T
e allMis1.JH737798                 80260 1661 +    106177 T
e falPer1.KB391107               2216004 600 -   3101084 T
e falChe1.KB398074               4263387 600 -   7151304 T
e macEug2.GL059506                  6470   0 +     21939 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr1                  24929349 4997 + 204065131 T
e anaPla1.KB742960                141378   0 +    531124 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB478633               2433836 723 +   6037886 T
e chrPic2.chr2                  18523590 544 -  68452538 T
e pelSin1.JH211373               2650239   0 -   4257854 I
e calJac3.chr14                 99336234 1612 + 108792865 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr3                  13879677  44 - 112617285 I
e orcOrc1.KB316907              10838741  53 +  17242564 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e saiBol1.JH378126              24002667 1293 +  27210278 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=15335.000000
s hg38.chr8_KI270814v1_alt         82241 12 +    141812 GGAACCTC-AGAT
s ponAbe2.chr8                  59051770 12 + 153482349 GGAATCTC-AGAT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48130073 12 + 100215132 GGAACCTC-AGAT
i nomLeu3.chr16                C 0 C 0
s otoGar3.GL873541              21184974 11 -  23169006 GGGAACCC-AGA-
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19208773 10 -  22931326 -GGAACCC-ACA-
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2803165 10 -   6207710 -GGAACCC-ATA-
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10838794  2 +  17242564 ----------GG-
i orcOrc1.KB316907             I 53 C 0
s equCab2.chr15                 84032417 11 +  91571448 GGGAACCA-ATA-
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6805922 11 -  14545593 GGGAACCG-ATA-
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134103500 11 + 140925898 GAGAGCCC-ACA-
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57836370 11 -  64289059 GGGAACCC-AGA-
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13608032 11 -  19722643 GGGAATCA-AGA-
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3030080 11 +   4816872 GGGAACCC-AGA-
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19409237 11 -  23789964 AGGAACCA-ATA-
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27615597 10 -  46401353 -AGAACTC-AGA-
i loxAfr3.scaffold_20          C 0 I 501
s triMan1.JH594629               9962869 11 +  24341844 -AGAACTCAAGA-
i triMan1.JH594629             C 0 I 1
s dasNov3.JH567436               1029836 10 -   2788317 -GGAACTC-AGA-
i dasNov3.JH567436             I 7 I 1
s sarHar1.chr1_GL834688_random    515852 11 +   3395230 GAAGGGTC-AAA-
i sarHar1.chr1_GL834688_random C 0 I 1
s xenTro7.KB021651              44921171  9 + 117219152 -GGAACAA-GC--
i xenTro7.KB021651             C 0 C 0
e ornAna1.Ultra479               3871811 7152 -   6008416 T
e tetNig2.chr10                  6371819 2907 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chr1A                 24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195           44258 5209 +     59083 T
e pseHum1.KB221193               9789407 578 +  32995986 T
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375358               1019718 687 +   1462937 T
e allMis1.JH737798                 80260 1661 +    106177 T
e falPer1.KB391107               2216004 600 -   3101084 T
e falChe1.KB398074               4263387 600 -   7151304 T
e macEug2.GL059506                  6470  0 +     21939 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr1                  24929349 4997 + 204065131 T
e anaPla1.KB742960                141378  0 +    531124 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB478633               2433836 723 +   6037886 T
e chrPic2.chr2                  18523590 544 -  68452538 T
e pelSin1.JH211373               2650239  0 -   4257854 I
e calJac3.chr14                 99336234 1612 + 108792865 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr3                  13879677 44 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e saiBol1.JH378126              24002667 1293 +  27210278 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=64809.000000
s hg38.chr8_KI270814v1_alt         82253 14 +    141812 TTCTTACTT-AGAAA
s ponAbe2.chr8                  59051782 14 + 153482349 TTCTTACTT-AGAAA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48130085 14 + 100215132 TTCTTACTT-AGAAA
i nomLeu3.chr16                C 0 C 0
s otoGar3.GL873541              21184985 14 -  23169006 CACCGATTT-AAAAA
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19208783 14 -  22931326 CCCCTCATC-AAAAA
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2803175 14 -   6207710 CCCCTCATC-AAAAA
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10838796 14 +  17242564 CACCTCCTT-AAGAA
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84032428 14 +  91571448 CATTTCATT-AAAAA
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6805933 14 -  14545593 CACCTCATT-AAAAA
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134103511 14 + 140925898 TACCTCATT-AAAAA
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57836381 15 -  64289059 TACCTCATTAAAAAA
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13608043 13 -  19722643 CGCCTCATT--AAAA
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3030091 14 +   4816872 TACCGCCTT-AAAAA
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19409248 14 -  23789964 TACCTCATT-AAAAC
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27616108 14 -  46401353 ttCCTACCA-AAAAA
i loxAfr3.scaffold_20          I 501 I 2
s triMan1.JH594629               9962881 13 +  24341844 -ACCTCATA-AAAAA
i triMan1.JH594629             I 1 I 557
s dasNov3.JH567436               1029847 13 -   2788317 -ACCGCATC-AAAAA
i dasNov3.JH567436             I 1 C 0
s sarHar1.chr1_GL834688_random    515864 10 +   3395230 ----CCTTT-GGGTA
i sarHar1.chr1_GL834688_random I 1 I 6
s xenTro7.KB021651              44921180 14 + 117219152 TTCTACATT-AAATG
i xenTro7.KB021651             C 0 C 0
e ornAna1.Ultra479               3871811 7152 -   6008416 T
e tetNig2.chr10                  6371819 2907 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chr1A                 24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195           44258 5209 +     59083 T
e pseHum1.KB221193               9789407 578 +  32995986 T
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375358               1019718 687 +   1462937 T
e allMis1.JH737798                 80260 1661 +    106177 T
e falPer1.KB391107               2216004 600 -   3101084 T
e falChe1.KB398074               4263387 600 -   7151304 T
e macEug2.GL059506                  6470  0 +     21939 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr1                  24929349 4997 + 204065131 T
e anaPla1.KB742960                141378  0 +    531124 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB478633               2433836 723 +   6037886 T
e chrPic2.chr2                  18523590 544 -  68452538 T
e pelSin1.JH211373               2650239  0 -   4257854 I
e calJac3.chr14                 99336234 1612 + 108792865 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr3                  13879677 44 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e saiBol1.JH378126              24002667 1293 +  27210278 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-55364.000000
s hg38.chr8_KI270814v1_alt         82267 39 +    141812 ACACCCCAGGAG-TAAGGATTT----------------------------------TAGGTAAATTCCA-GTGA------------A-------
s ponAbe2.chr8                  59051796 39 + 153482349 ACACCCCAGGAG-TAAGGATTT----------------------------------TAGGTAAGTTCCA-GTGA------------A-------
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48130099 39 + 100215132 ACACCCCAGGAG-TAAGGATTT----------------------------------TAGGTAAGTGCCA-ATGA------------A-------
i nomLeu3.chr16                C 0 C 0
s otoGar3.GL873541              21184999 83 -  23169006 ACA--ccaggag-cagtggctcacacctataatcctagcactctgggagtccaaggcgggtagactgcc-ctgagcccacaggtttg-------
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19208797 39 -  22931326 CCACCTAAGGGG-GGAGTAGTC----------------------------------TAGCTAGCTTGCA-GTGA------------G-------
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2803189 38 -   6207710 CCA-CTAAGGGG-GGAGTAGTC----------------------------------TAGCTAGCTTCCA-GTGA------------G-------
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10838810 12 +  17242564 CAC-CACAGCGG-G--------------------------------------------------------------------------------
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84032442 39 +  91571448 ATACCTAACGAG-GGAGTTTTT----------------------------------TAGTTCAGTTCCA-GTGG------------G-------
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6805947 39 -  14545593 ACACCTAACGAG-GGAAATTTT----------------------------------TAGCTCAGTTCCA-GTGA------------G-------
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134103525 40 + 140925898 ACACTAATGGAG-GGAGTACTT----------------------------------TAGCGACGCTCCATGTGA------------G-------
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57836396 39 -  64289059 ACACTAACGGAG-AGAGTATTC----------------------------------TAGCAATGCACCA-GTGA------------G-------
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13608056 39 -  19722643 ACACTGACGGAG-AGACAATTA----------------------------------TAGCAACATACCA-GCGC------------C-------
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3030105 39 +   4816872 ACACTAATGGAG-AGAGTATTT----------------------------------TAGCAATGTACCC-GTGA------------G-------
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19409262 36 -  23789964 ACACGCA---GG-AGGGTTTCT----------------------------------CAGCCACGTTCCA-GTGA------------G-------
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27616124 36 -  46401353 CCACCTAAGGAG----TATTTT----------------------------------TAGCTAAAGTCCA-ATGA------------G-------
i loxAfr3.scaffold_20          I 2 C 0
s triMan1.JH594629               9963451 36 +  24341844 ACACCTAAGGAG----TATTTT----------------------------------TAGCTAAGTTCCA-GTGA------------G-------
i triMan1.JH594629             I 557 C 0
s dasNov3.JH567436               1029860 27 -   2788317 TCACCTTAGGAGACAATATTTT----------------------------------TAACT---------------------------------
i dasNov3.JH567436             C 0 C 0
s sarHar1.chr1_GL834688_random    515880 38 +   3395230 CAGCCTCAAGAC-AGAAAGCTG----------------------------------TATGAAAG-GGCA-CTGA------------G-------
i sarHar1.chr1_GL834688_random I 6 I 36
s xenTro7.KB021651              44921194 31 + 117219152 ----------------CCATTT----------------------------------TAAAAAAATGTTA-ATCG------------AAAATATA
i xenTro7.KB021651             C 0 C 0
e ornAna1.Ultra479               3871811 7152 -   6008416 T
e tetNig2.chr10                  6371819 2907 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chr1A                 24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195           44258 5209 +     59083 T
e pseHum1.KB221193               9789407 578 +  32995986 T
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375358               1019718 687 +   1462937 T
e allMis1.JH737798                 80260 1661 +    106177 T
e falPer1.KB391107               2216004 600 -   3101084 T
e falChe1.KB398074               4263387 600 -   7151304 T
e macEug2.GL059506                  6470  0 +     21939 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr1                  24929349 4997 + 204065131 T
e anaPla1.KB742960                141378  0 +    531124 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB478633               2433836 723 +   6037886 T
e chrPic2.chr2                  18523590 544 -  68452538 T
e pelSin1.JH211373               2650239  0 -   4257854 I
e calJac3.chr14                 99336234 1612 + 108792865 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr3                  13879677 44 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e saiBol1.JH378126              24002667 1293 +  27210278 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-71983.000000
s hg38.chr8_KI270814v1_alt         82306 26 +    141812 AGG---TGAGTT----TGAGAGA-------------GAA----C---------------------------------------------------------ACCTGT
s ponAbe2.chr8                  59051835 26 + 153482349 AGG---TGAGTT----TGAGAGA-------------GAA----C---------------------------------------------------------ACCTGT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48130138 26 + 100215132 AGG---TGAGTT----TGAAAGA-------------GAA----C---------------------------------------------------------AACTGT
i nomLeu3.chr16                C 0 C 0
s otoGar3.GL873541              21185082 83 -  23169006 aga---ccagcc----tgagcaa-------------gag----caagaccctgtctctaaaaatagccaggcactgtggagtgtgcctgtagttccaagctacttgg
i otoGar3.GL873541             C 0 C 0
s orcOrc1.KB316907              10838822 22 +  17242564 GGG---CGAGTG----TGC-----------------GCG----T---------------------------------------------------------GTGGAT
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84032481 25 +  91571448 AGGAGATGAGCC----TAA-----------------GTA----T---------------------------------------------------------GTATGT
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6805986 29 -  14545593 AGGAGGCAAGTCTGAGTGA-----------------GTA----T---------------------------------------------------------GCATGT
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134103565 22 + 140925898 AGG---GAAGTC----TGA-----------------GTA----T---------------------------------------------------------GTATTT
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57836435 10 -  64289059 AGG---TGAGTC----T------------------------------------------------------------------------------------------
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13608095 22 -  19722643 AGG---TGAGTC----TGG-----------------GTA----T---------------------------------------------------------GTGTAG
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3030144 22 +   4816872 AGG---TGAGTC----TGG-----------------GTA----T---------------------------------------------------------GTGTAT
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19409298 31 -  23789964 GGGA--TGAGTC----TGAGCGA---------GTGTGTG----T---------------------------------------------------------GTATGT
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27616160 25 -  46401353 AGGACCCGAGTT----TCA-----------------GTG----T---------------------------------------------------------GTATAT
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9963487 29 +  24341844 AAGACATGAGTT----TGA-----------------GTGTGTTT---------------------------------------------------------GTATAT
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1029887 22 -   2788317 -------GTGTT----CAA-----------------GTGTATAT---------------------------------------------------------GTGTGT
i dasNov3.JH567436             C 0 C 0
s sarHar1.chr1_GL834688_random    515954 39 +   3395230 atg---tgtgtt----tgataggatgttgtttatgtgta----t---------------------------------------------------------gtatgt
i sarHar1.chr1_GL834688_random I 36 C 0
s xenTro7.KB021651              44921225 18 + 117219152 TGG---TGATTG----CAG-----------------TGG----T---------------------------------------------------------GT----
i xenTro7.KB021651             C 0 C 0
e vicPac2.KB632437              19208836  0 -  22931326 C
e camFer1.KB017763               2803227  0 -   6207710 C
e ornAna1.Ultra479               3871811 7152 -   6008416 T
e tetNig2.chr10                  6371819 2907 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chr1A                 24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195           44258 5209 +     59083 T
e pseHum1.KB221193               9789407 578 +  32995986 T
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375358               1019718 687 +   1462937 T
e allMis1.JH737798                 80260 1661 +    106177 T
e falPer1.KB391107               2216004 600 -   3101084 T
e falChe1.KB398074               4263387 600 -   7151304 T
e macEug2.GL059506                  6470  0 +     21939 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr1                  24929349 4997 + 204065131 T
e anaPla1.KB742960                141378  0 +    531124 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB478633               2433836 723 +   6037886 T
e chrPic2.chr2                  18523590 544 -  68452538 T
e pelSin1.JH211373               2650239  0 -   4257854 I
e calJac3.chr14                 99336234 1612 + 108792865 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr3                  13879677 44 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e saiBol1.JH378126              24002667 1293 +  27210278 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=62340.000000
s hg38.chr8_KI270814v1_alt         82332 16 +    141812 GAGGCTAGAAAGAACA
s ponAbe2.chr8                  59051861 16 + 153482349 GAGGCTAGAAAGAACA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48130164 16 + 100215132 GAGGCTAGAAAGAATA
i nomLeu3.chr16                C 0 C 0
s otoGar3.GL873541              21185165 16 -  23169006 gaggttaagacaatcg
i otoGar3.GL873541             C 0 C 0
s orcOrc1.KB316907              10838844 12 +  17242564 A----CAGAAAGAACC
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84032506 16 +  91571448 GAGGCCAGAAGGGACA
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6806015 16 -  14545593 GAGGCCAGAAAGGACA
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134103587 16 + 140925898 GAGGCCAGAGAGGACA
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57836445 16 -  64289059 GAGGCCAGAGAGAATG
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13608117 16 -  19722643 GAGGCCAGACAAGACG
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3030166 13 +   4816872 GAGGCCAG---AGATG
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19409329 16 -  23789964 GAGGCCAGAAAGGCCA
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27616185 16 -  46401353 GCAGTCAGAAAGTACC
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9963516 16 +  24341844 ATGGTCAGAAAGGACA
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1029909 16 -   2788317 GAGACCAGAAAGATCA
i dasNov3.JH567436             C 0 C 0
s sarHar1.chr1_GL834688_random    515993 16 +   3395230 gtgtacagctagcttt
i sarHar1.chr1_GL834688_random C 0 I 6
s ornAna1.chr4                  58038780 16 -  58987262 GACGTTATTTAGTATA
i ornAna1.chr4                 n 7152 C 0
s xenTro7.KB021651              44921243 16 + 117219152 AAAAATAGAGGGAACA
i xenTro7.KB021651             C 0 N 0
e vicPac2.KB632437              19208836  0 -  22931326 C
e camFer1.KB017763               2803227  0 -   6207710 C
e tetNig2.chr10                  6371819 2907 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chr1A                 24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195           44258 5209 +     59083 T
e pseHum1.KB221193               9789407 578 +  32995986 T
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375358               1019718 687 +   1462937 T
e allMis1.JH737798                 80260 1661 +    106177 T
e falPer1.KB391107               2216004 600 -   3101084 T
e falChe1.KB398074               4263387 600 -   7151304 T
e macEug2.GL059506                  6470  0 +     21939 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr1                  24929349 4997 + 204065131 T
e anaPla1.KB742960                141378  0 +    531124 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB478633               2433836 723 +   6037886 T
e chrPic2.chr2                  18523590 544 -  68452538 T
e pelSin1.JH211373               2650239  0 -   4257854 I
e calJac3.chr14                 99336234 1612 + 108792865 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr3                  13879677 44 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e saiBol1.JH378126              24002667 1293 +  27210278 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-34793.000000
s hg38.chr8_KI270814v1_alt         82348  9 +    141812 TT-----------------------------------------------------------------------------------------CTTTTAA
s ponAbe2.chr8                  59051877  9 + 153482349 TT-----------------------------------------------------------------------------------------CTTTTAA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48130180  9 + 100215132 TT-----------------------------------------------------------------------------------------CTTTTAA
i nomLeu3.chr16                C 0 C 0
s otoGar3.GL873541              21185181 98 -  23169006 cttgagcccaagagtttgaggttgctgtgagctacgacatcatgggcaacaaagtgagactctgtctcaaaaaaaaaaaaaaaaaGCAAAACTGTTCT
i otoGar3.GL873541             C 0 C 0
s orcOrc1.KB316907              10838856  9 +  17242564 CG-----------------------------------------------------------------------------------------CTTTCAA
i orcOrc1.KB316907             C 0 I 4
s equCab2.chr15                 84032522  9 +  91571448 TT-----------------------------------------------------------------------------------------CTTTAAA
i equCab2.chr15                C 0 I 8
s cerSim1.JH767782               6806031  9 -  14545593 TT-----------------------------------------------------------------------------------------CTTTAAA
i cerSim1.JH767782             C 0 I 6
s felCat8.chrA3                134103603  9 + 140925898 tt-----------------------------------------------------------------------------------------tctttaa
i felCat8.chrA3                C 0 I 212
s canFam3.chr17                 57836461  9 -  64289059 TT-----------------------------------------------------------------------------------------TCTTTAG
i canFam3.chr17                C 0 I 4
s musFur1.GL896914              13608133  9 -  19722643 TT-----------------------------------------------------------------------------------------TCTTTAG
i musFur1.GL896914             C 0 I 4
s odoRosDiv1.KB229025            3030179  9 +   4816872 TT-----------------------------------------------------------------------------------------TCTTTAG
i odoRosDiv1.KB229025          C 0 I 4
s pteAle1.KB030580              19409345  9 -  23789964 TT-----------------------------------------------------------------------------------------CCTTAAG
i pteAle1.KB030580             C 0 I 2
s loxAfr3.scaffold_20           27616201  9 -  46401353 CT-----------------------------------------------------------------------------------------CTCTATG
i loxAfr3.scaffold_20          C 0 I 10
s triMan1.JH594629               9963532  9 +  24341844 CC-----------------------------------------------------------------------------------------CTTTAGG
i triMan1.JH594629             C 0 I 10
s dasNov3.JH567436               1029925  9 -   2788317 CT-----------------------------------------------------------------------------------------TTTTATC
i dasNov3.JH567436             C 0 I 4
s monDom5.chr1                 530522362  5 + 748055161 TT-----------------------------------------------------------------------------------------TTT----
i monDom5.chr1                 N 0 C 0
s sarHar1.chr1_GL834688_random    516015  5 +   3395230 tt-----------------------------------------------------------------------------------------ttt----
i sarHar1.chr1_GL834688_random I 6 I 2
s macEug2.GL109592                 96716  5 -    117391 TT-----------------------------------------------------------------------------------------CTT----
i macEug2.GL109592             n 0 C 0
s ornAna1.chr4                  58038796  9 -  58987262 TC-----------------------------------------------------------------------------------------TTTTTAA
i ornAna1.chr4                 C 0 C 0
e vicPac2.KB632437              19208836  0 -  22931326 C
e camFer1.KB017763               2803227  0 -   6207710 C
e tetNig2.chr10                  6371819 2907 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chr1A                 24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195           44258 5209 +     59083 T
e pseHum1.KB221193               9789407 578 +  32995986 T
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375358               1019718 687 +   1462937 T
e allMis1.JH737798                 80260 1661 +    106177 T
e falPer1.KB391107               2216004 600 -   3101084 T
e falChe1.KB398074               4263387 600 -   7151304 T
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr1                  24929349 4997 + 204065131 T
e anaPla1.KB742960                141378  0 +    531124 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB478633               2433836 723 +   6037886 T
e chrPic2.chr2                  18523590 544 -  68452538 T
e pelSin1.JH211373               2650239  0 -   4257854 I
e calJac3.chr14                 99336234 1612 + 108792865 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr3                  13879677 44 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e saiBol1.JH378126              24002667 1293 +  27210278 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=190636.000000
s hg38.chr8_KI270814v1_alt         82357 52 +    141812 TTCTCTAATTTTAAGCAAAAGTT-AGTGTTAGA-TTAATCTAATTCCACCCACC---
s ponAbe2.chr8                  59051886 52 + 153482349 TTCTCTAATTTTAAGCAAAGGTT-AGTGTTAGA-TTAACCTAATTCCACCCACC---
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48130189 52 + 100215132 TTCCCTAATTTTAAGCAAAGGTT-AGTGTTAGA-TTAACCTAATTCCACCCACC---
i nomLeu3.chr16                C 0 C 0
s otoGar3.GL873541              21185279 50 -  23169006 TTCCCTACTTTTGATGAAAGGAC-GGTGTTAGA-TTAATCTAACTCCACTCT-----
i otoGar3.GL873541             C 0 C 0
s orcOrc1.KB316907              10838869 49 +  17242564 GTCGCT-CCTTCAG--AAAGGCT-GGAGCTGGG-CTAGTCTAGCCCGACCCTCC---
i orcOrc1.KB316907             I 4 C 0
s equCab2.chr15                 84032539 52 +  91571448 TTCCCTACCTTTAATAAAAGGTT-GGTGTTAGA-TTAATCTAATCCCACCATCC---
i equCab2.chr15                I 8 C 0
s cerSim1.JH767782               6806046 44 -  14545593 TTCCCTACCTTTAATAAAAGGTT-GG---------TAGGTTAATCCCACCCTCC---
i cerSim1.JH767782             I 6 C 0
s felCat8.chrA3                134103824 52 + 140925898 TTCCCTACCTTCAATTAGTGGTT-GGGGTTGGA-TTCAACTCATCCCACGCTCC---
i felCat8.chrA3                I 212 C 0
s canFam3.chr17                 57836474 52 -  64289059 TTTCTTATTCTTAATTAATGGTT-GATGTTAGA-TTTATCTTATCCCACCCTCC---
i canFam3.chr17                I 4 C 0
s musFur1.GL896914              13608146 52 -  19722643 TTCCCTACCTTTAATTAATAGCT-AGTGTTAGA-TTCAGCTCAGCCCACCCTCC---
i musFur1.GL896914             I 4 C 0
s odoRosDiv1.KB229025            3030192 52 +   4816872 TTCCCTACCTTTAATTAATGGTT-GGGGTTAGA-TTCAGCTCATTCCACCCTCT---
i odoRosDiv1.KB229025          I 4 C 0
s pteAle1.KB030580              19409356 51 -  23789964 CCCCCCGCCTTCCATAAAAGGCT-GGTGTTAGA-GCCATCT-GTGCCACCATCC---
i pteAle1.KB030580             I 2 C 0
s loxAfr3.scaffold_20           27616220 52 -  46401353 TTCTCTATCTTTAATAAAAAGTT-GGTGTTAGA-TTAACCTAATTCCAGTCTCC---
i loxAfr3.scaffold_20          I 10 C 0
s triMan1.JH594629               9963551 52 +  24341844 TTCTCTATCTTTAACAAAAAGTT-GGTGTTAGA-CTAACGTAATTTCAGTCTCC---
i triMan1.JH594629             I 10 C 0
s dasNov3.JH567436               1029938 52 -   2788317 ATCTTTATCTTTAATAAAAGGTT-CCTGTTAGA-GTAAATTAAACCCACCGTCC---
i dasNov3.JH567436             I 4 C 0
s monDom5.chr1                 530522367 53 + 748055161 -TTTTTCCATCCAAAGAACAATTCAGTGTTAGATTAATTCCAGTCCAGTTCCAT---
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    516022 51 +   3395230 -tttcttcattcaaTGAACAATCCAGTGTTAAT-CTATTCCAGTCCCGTGCTA----
i sarHar1.chr1_GL834688_random I 2 C 0
s macEug2.GL109592                 96721 53 -    117391 -TTTCTTCATTCAATGAATGATTCAGTGTTAAGACTATTCTAGTACCATGTTAC---
i macEug2.GL109592             C 0 C 0
s ornAna1.chr4                  58038805 55 -  58987262 CCTTTTACTGTGAATAATCATTC-CATAATGTT-TCTTTTTTGGTCTGCAATCCCCC
i ornAna1.chr4                 C 0 C 0
e vicPac2.KB632437              19208836  0 -  22931326 C
e camFer1.KB017763               2803227  0 -   6207710 C
e tetNig2.chr10                  6371819 2907 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chr1A                 24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195           44258 5209 +     59083 T
e pseHum1.KB221193               9789407 578 +  32995986 T
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375358               1019718 687 +   1462937 T
e allMis1.JH737798                 80260 1661 +    106177 T
e falPer1.KB391107               2216004 600 -   3101084 T
e falChe1.KB398074               4263387 600 -   7151304 T
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr1                  24929349 4997 + 204065131 T
e anaPla1.KB742960                141378  0 +    531124 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB478633               2433836 723 +   6037886 T
e chrPic2.chr2                  18523590 544 -  68452538 T
e pelSin1.JH211373               2650239  0 -   4257854 I
e calJac3.chr14                 99336234 1612 + 108792865 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr3                  13879677 44 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e saiBol1.JH378126              24002667 1293 +  27210278 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=183415.000000
s hg38.chr8_KI270814v1_alt         82409 33 +    141812 AGGAGGCTAAGA---------CTCCCCTAGTAAAAGAAA-CG-T
s ponAbe2.chr8                  59051938 33 + 153482349 AGGAGGCTAAGG---------CTCCCCTAGTAAAAGAAA-CA-T
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48130241 33 + 100215132 AGGAGGCTAAGA---------CTCCCCTAGTAAAATAAA-TG-T
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99337846 33 + 108792865 AGGAGGCTAAGA---------CTTCCCTAGTAAAAGAAA-TG-T
i calJac3.chr14                I 1612 C 0
s saiBol1.JH378126              24003960 33 +  27210278 AGGAGGCTAAGA---------CTTCCCTAGTAAAAGAAA-TG-T
i saiBol1.JH378126             I 1293 C 0
s otoGar3.GL873541              21185329 34 -  23169006 AGGAGAATAAGA---------TACCCCTAGTAAAAGAAAGCG-T
i otoGar3.GL873541             C 0 C 0
s orcOrc1.KB316907              10838918 32 +  17242564 AGGAGCCCCAGG---------CCCCCTGAACGACAGAAA-CT--
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84032591 32 +  91571448 AAGAGACTAAGG---------CTCCCCTAATAATAGAAA-TG--
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6806090 32 -  14545593 AGGAGACTAAGG---------CTCCCCAAGTAACAGAAA-TG--
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134103876 32 + 140925898 AGGAGACTCAGG---------CTCCCCCAGTAAGAGAAA-CT--
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57836526 32 -  64289059 CAGGGACTCAGG---------CTCCACTTGTAAGAGAAA-TC--
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13608198 32 -  19722643 AGGACACTCAGG---------CTCCCCTAGTAAGAGAAA-TT--
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3030244 32 +   4816872 AAGAAACTCAGG---------CTCCTCTAGTAAGAGAAA-CT--
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19409407 31 -  23789964 AGCCGGCCCGGG----------TCCCCCAGGAACAGAAA-CC--
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27616272 34 -  46401353 AGAAGACTAGGG---------TTTCCCTAGTAAAATAAA-ACGT
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9963603 34 +  24341844 AGAAGACTAGGG---------TTCCCCTAGTAAAATAAA-ATGT
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1029990 28 -   2788317 AGAAGAC---------------ACCCTTAGAAAAATCAA-CTGT
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530522420 33 + 748055161 AGAAGACTTAGG---------TTGCCTTATTAAAATTAA-TG-T
i monDom5.chr1                 C 0 I 97
s sarHar1.chr1_GL834688_random    516073 31 +   3395230 --AAGACTAAGG---------TTTCCTTATTAAAATTAA-TG-T
i sarHar1.chr1_GL834688_random C 0 I 2
s macEug2.GL109592                 96774 33 -    117391 AGAAGACTTAGG---------TTCCCTTATTAAAATTAA-TG-T
i macEug2.GL109592             C 0 I 2
s ornAna1.chr4                  58038860 41 -  58987262 AGAAGACTCAGAGAATGCAGACTCAAATAGCTGATGCCA-GG--
i ornAna1.chr4                 C 0 C 0
e vicPac2.KB632437              19208836  0 -  22931326 C
e camFer1.KB017763               2803227  0 -   6207710 C
e tetNig2.chr10                  6371819 2907 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chr1A                 24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195           44258 5209 +     59083 T
e pseHum1.KB221193               9789407 578 +  32995986 T
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375358               1019718 687 +   1462937 T
e allMis1.JH737798                 80260 1661 +    106177 T
e falPer1.KB391107               2216004 600 -   3101084 T
e falChe1.KB398074               4263387 600 -   7151304 T
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr1                  24929349 4997 + 204065131 T
e anaPla1.KB742960                141378  0 +    531124 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB478633               2433836 723 +   6037886 T
e chrPic2.chr2                  18523590 544 -  68452538 T
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr3                  13879677 44 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=62093.000000
s hg38.chr8_KI270814v1_alt         82442 29 +    141812 CAAC-------ACAGGGACAAAA-GGAGTCCAAAAAT
s ponAbe2.chr8                  59051971 29 + 153482349 TAAC-------ACAGGGACAAAA-GGAGTCGAAAAAT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48130274 29 + 100215132 CAAC-------ACAGGGACAAAA-GGAGTCCAAAAAT
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99337879 29 + 108792865 CAAC-------ACAGGGGCAAAA-GGAGCCCAAAAAT
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24003993 29 +  27210278 CAAC-------ACAGGTGCAAAA-GGAGTCCAAGAAT
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21185363 29 -  23169006 CACC-------GCAGGGACACGT-GGAGTCCAGTAAC
i otoGar3.GL873541             C 0 C 0
s orcOrc1.KB316907              10838950 20 +  17242564 ---------------GGGC-GGC-AGGGTCCAGCAGT
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84032623 17 +  91571448 ---------------GAAC-----AGAGTCCAATAAT
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6806122 22 -  14545593 ---------------GGACAGACAAGAGTCCAATAAC
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134103908 21 + 140925898 ---------------GGACAAAT-GGAGTCCAATCAT
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57836558 21 -  64289059 ---------------AGACAAAT-GGAGTCCAATAAT
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13608230 21 -  19722643 ---------------GGACAAAT-GGAGTCCACTGAC
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3030276 21 +   4816872 ---------------GGACAAAT-GGAGTCCACTAAT
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19409438 19 -  23789964 ----------------GACAAAT--GCGTCTAACAGT
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27616306 30 -  46401353 CAACA------AGGGAGACAAAT-GGAGTCTGATAAT
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9963637 29 +  24341844 CAAC-------AGGGAGACAAAT-GGGGTCTGGTAAT
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1030018 29 -   2788317 CAAC-------ATGAAGGACAAT-GGAATCCAATAAT
i dasNov3.JH567436             C 0 C 0
s sarHar1.chr1_GL834688_random    516106 32 +   3395230 ----TAAAGTCACCGGGAAAAAT-TGGCTCCAAAAAC
i sarHar1.chr1_GL834688_random I 2 I 6
s macEug2.GL109592                 96809 32 -    117391 ----TAAAGTCATTGGGAAAAAT-TGGATCCAATAAA
i macEug2.GL109592             I 2 I 6
s ornAna1.chr4                  58038901 23 -  58987262 -------------AGAGAAAACA-GGAGATTAGACTC
i ornAna1.chr4                 C 0 C 0
e vicPac2.KB632437              19208836  0 -  22931326 C
e camFer1.KB017763               2803227  0 -   6207710 C
e tetNig2.chr10                  6371819 2907 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chr1A                 24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195           44258 5209 +     59083 T
e pseHum1.KB221193               9789407 578 +  32995986 T
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375358               1019718 687 +   1462937 T
e allMis1.JH737798                 80260 1661 +    106177 T
e falPer1.KB391107               2216004 600 -   3101084 T
e falChe1.KB398074               4263387 600 -   7151304 T
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr1                  24929349 4997 + 204065131 T
e anaPla1.KB742960                141378  0 +    531124 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB478633               2433836 723 +   6037886 T
e chrPic2.chr2                  18523590 544 -  68452538 T
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530522453 97 + 748055161 I
e taeGut2.chr3                  13879677 44 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-7063.000000
s hg38.chr8_KI270814v1_alt         82471 8 +    141812 ----GTATTTGT
s ponAbe2.chr8                  59052000 8 + 153482349 ----GTATTTGT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48130303 8 + 100215132 ----GTATTTGT
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99337908 8 + 108792865 ----GCAGGTGG
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24004022 8 +  27210278 ----GCATGTGG
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21185392 8 -  23169006 ----ACATTTGG
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19208836 8 -  22931326 ----GCGTTTGG
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2803227 8 -   6207710 ----GTGTTCGG
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10838970 8 +  17242564 ----GCACCTGG
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84032640 8 +  91571448 ----GCACATGG
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6806144 8 -  14545593 ----GCATACGG
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134103929 7 + 140925898 ----GCCC-CGG
i felCat8.chrA3                C 0 I 1
s canFam3.chr17                 57836579 7 -  64289059 ----GCAT-TAG
i canFam3.chr17                C 0 I 1
s musFur1.GL896914              13608251 7 -  19722643 ----GCAC-TGG
i musFur1.GL896914             C 0 I 790
s odoRosDiv1.KB229025            3030297 7 +   4816872 ----GCAC-TGC
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19409457 4 -  23789964 ----GCAC----
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27616336 8 -  46401353 ----AAATTTGT
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9963666 8 +  24341844 ----AAATTTGT
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1030047 8 -   2788317 ----AAATTTGA
i dasNov3.JH567436             C 0 C 0
s sarHar1.chr1_GL834688_random    516144 8 +   3395230 ----ATCCTTGA
i sarHar1.chr1_GL834688_random I 6 I 7
s macEug2.GL109592                 96847 8 -    117391 ----GCCCTTGA
i macEug2.GL109592             I 6 I 7
s ornAna1.chr4                  58038924 8 -  58987262 TCTTACAT----
i ornAna1.chr4                 C 0 C 0
e tetNig2.chr10                  6371819 2907 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chr1A                 24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195           44258 5209 +     59083 T
e pseHum1.KB221193               9789407 578 +  32995986 T
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375358               1019718 687 +   1462937 T
e allMis1.JH737798                 80260 1661 +    106177 T
e falPer1.KB391107               2216004 600 -   3101084 T
e falChe1.KB398074               4263387 600 -   7151304 T
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr1                  24929349 4997 + 204065131 T
e anaPla1.KB742960                141378 0 +    531124 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB478633               2433836 723 +   6037886 T
e chrPic2.chr2                  18523590 544 -  68452538 T
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530522453 97 + 748055161 I
e taeGut2.chr3                  13879677 44 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=47429.000000
s hg38.chr8_KI270814v1_alt         82479 20 +    141812 CATTTT-CTCGGAAGCTGCTG
s ponAbe2.chr8                  59052008 20 + 153482349 CATTTT-CTTGAAAACTGCTG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48130311 20 + 100215132 CATTTT-CTTGGAAGCTGCTG
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99337916 20 + 108792865 CGTTTT-CTCTGAAGCCACTG
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24004030 20 +  27210278 CGTTTT-CGCTGAAGCCACTG
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21185400 16 -  23169006 GGTTTT-CTCTGAAGCT----
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19208844 18 -  22931326 TGTTCC-CTCGGCAGCCCC--
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2803235 18 -   6207710 TGTTCC-CTCGGCAGCCCC--
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10838978 17 +  17242564 CATTGC-CTGAAGCGCCT---
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84032648 20 +  91571448 TGTTTT-CTCTGAAGCCCCTA
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6806152 20 -  14545593 TGTTTC-CTCTGAAGCCCCTG
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134103937 19 + 140925898 -GTGCT-GTCTGAAGCCTCTG
i felCat8.chrA3                I 1 C 0
s canFam3.chr17                 57836587 19 -  64289059 -GTGCT-GTCTGAAGCCTCTG
i canFam3.chr17                I 1 C 0
s odoRosDiv1.KB229025            3030304 20 +   4816872 TGTGTT-GTCTGAAGCCTCTG
i odoRosDiv1.KB229025          C 0 I 574
s pteAle1.KB030580              19409461 16 -  23789964 CGTG-----CTGAGGCCGCTG
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27616344 20 -  46401353 TGTTTT-CTTTGAAGCGACTA
i loxAfr3.scaffold_20          C 0 I 6
s triMan1.JH594629               9963674 20 +  24341844 TGTTTT-CTTTGAAATGACCA
i triMan1.JH594629             C 0 I 5
s dasNov3.JH567436               1030055 20 -   2788317 TATTTT-CTCTGAAGCTACTG
i dasNov3.JH567436             C 0 I 5
s sarHar1.chr1_GL834688_random    516159 20 +   3395230 agttct-tttaaaaaacaaaa
i sarHar1.chr1_GL834688_random I 7 I 4
s macEug2.GL109592                 96862 21 -    117391 AGTTCTCTTTAAAAACCAAAA
i macEug2.GL109592             I 7 I 4
s ornAna1.chr4                  58038932 12 -  58987262 CGTTTC-TTGTCA--------
i ornAna1.chr4                 C 0 C 0
e musFur1.GL896914              13608258 790 -  19722643 I
e tetNig2.chr10                  6371819 2907 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chr1A                 24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195           44258 5209 +     59083 T
e pseHum1.KB221193               9789407 578 +  32995986 T
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375358               1019718 687 +   1462937 T
e allMis1.JH737798                 80260 1661 +    106177 T
e falPer1.KB391107               2216004 600 -   3101084 T
e falChe1.KB398074               4263387 600 -   7151304 T
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr1                  24929349 4997 + 204065131 T
e anaPla1.KB742960                141378  0 +    531124 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB478633               2433836 723 +   6037886 T
e chrPic2.chr2                  18523590 544 -  68452538 T
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530522453 97 + 748055161 I
e taeGut2.chr3                  13879677 44 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-6250.000000
s hg38.chr8_KI270814v1_alt         82499 7 +    141812 ATATTAG
s ponAbe2.chr8                  59052028 7 + 153482349 ATATTAG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48130331 7 + 100215132 ATATTAG
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99337936 7 + 108792865 GTATCAG
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24004050 7 +  27210278 GTATCAG
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21185416 1 -  23169006 ------G
i otoGar3.GL873541             C 0 C 0
s pteAle1.KB030580              19409477 1 -  23789964 ------G
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27616370 7 -  46401353 AGACAGA
i loxAfr3.scaffold_20          I 6 C 0
s triMan1.JH594629               9963699 7 +  24341844 AGTTGGA
i triMan1.JH594629             I 5 C 0
s dasNov3.JH567436               1030080 7 -   2788317 ACTCCAA
i dasNov3.JH567436             I 5 C 0
s sarHar1.chr1_GL834688_random    516183 7 +   3395230 agctcCT
i sarHar1.chr1_GL834688_random I 4 I 1
s macEug2.GL109592                 96887 7 -    117391 ATCTCCC
i macEug2.GL109592             I 4 I 1
s ornAna1.chr4                  58038944 7 -  58987262 CGATAAA
i ornAna1.chr4                 C 0 C 0
e musFur1.GL896914              13608258 790 -  19722643 I
e vicPac2.KB632437              19208862 0 -  22931326 C
e camFer1.KB017763               2803253 0 -   6207710 C
e odoRosDiv1.KB229025            3030324 574 +   4816872 I
e canFam3.chr17                 57836606 0 -  64289059 C
e felCat8.chrA3                134103956 0 + 140925898 C
e tetNig2.chr10                  6371819 2907 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chr1A                 24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195           44258 5209 +     59083 T
e pseHum1.KB221193               9789407 578 +  32995986 T
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375358               1019718 687 +   1462937 T
e allMis1.JH737798                 80260 1661 +    106177 T
e falPer1.KB391107               2216004 600 -   3101084 T
e falChe1.KB398074               4263387 600 -   7151304 T
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr1                  24929349 4997 + 204065131 T
e anaPla1.KB742960                141378 0 +    531124 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB478633               2433836 723 +   6037886 T
e chrPic2.chr2                  18523590 544 -  68452538 T
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530522453 97 + 748055161 I
e taeGut2.chr3                  13879677 44 - 112617285 I
e equCab2.chr15                 84032668 0 +  91571448 C
e cerSim1.JH767782               6806172 0 -  14545593 C
e orcOrc1.KB316907              10838995 0 +  17242564 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-4359.000000
s hg38.chr8_KI270814v1_alt         82506 6 +    141812 TGAGAA
s ponAbe2.chr8                  59052035 6 + 153482349 TGAGAA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48130338 6 + 100215132 TGAGAA
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99337943 6 + 108792865 TGAGAC
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24004057 6 +  27210278 TGAGAC
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21185417 6 -  23169006 TGACAG
i otoGar3.GL873541             C 0 C 0
s equCab2.chr15                 84032668 3 +  91571448 ---GGA
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6806172 3 -  14545593 ---GTA
i cerSim1.JH767782             C 0 C 0
s canFam3.chr17                 57836606 1 -  64289059 -----G
i canFam3.chr17                C 0 C 0
s pteAle1.KB030580              19409478 6 -  23789964 CTGGTG
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27616377 6 -  46401353 AGACAA
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9963706 6 +  24341844 AGACAA
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1030087 6 -   2788317 AAATGA
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530522550 5 + 748055161 -TGGAA
i monDom5.chr1                 I 97 C 0
s sarHar1.chr1_GL834688_random    516191 5 +   3395230 -TAGAA
i sarHar1.chr1_GL834688_random I 1 C 0
s macEug2.GL109592                 96895 5 -    117391 -TAGAA
i macEug2.GL109592             I 1 C 0
e musFur1.GL896914              13608258 790 -  19722643 I
e vicPac2.KB632437              19208862 0 -  22931326 C
e camFer1.KB017763               2803253 0 -   6207710 C
e odoRosDiv1.KB229025            3030324 574 +   4816872 I
e felCat8.chrA3                134103956 0 + 140925898 C
e ornAna1.chr4                  58038951 0 -  58987262 C
e tetNig2.chr10                  6371819 2907 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chr1A                 24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195           44258 5209 +     59083 T
e pseHum1.KB221193               9789407 578 +  32995986 T
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375358               1019718 687 +   1462937 T
e allMis1.JH737798                 80260 1661 +    106177 T
e falPer1.KB391107               2216004 600 -   3101084 T
e falChe1.KB398074               4263387 600 -   7151304 T
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr1                  24929349 4997 + 204065131 T
e anaPla1.KB742960                141378 0 +    531124 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB478633               2433836 723 +   6037886 T
e chrPic2.chr2                  18523590 544 -  68452538 T
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr3                  13879677 44 - 112617285 I
e orcOrc1.KB316907              10838995 0 +  17242564 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-89652.000000
s hg38.chr8_KI270814v1_alt         82512 14 +    141812 GAGGATGCTTGCTG
s ponAbe2.chr8                  59052041 14 + 153482349 GAGGATGCTTGCTG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48130344 14 + 100215132 GAGGATGCTTGCTG
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99337949 14 + 108792865 GCTCCCACAGGTGA
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24004063 14 +  27210278 GCTCCCGCCGGTGA
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21185423 12 -  23169006 ATGGTCTCCA--TG
i otoGar3.GL873541             C 0 C 0
s equCab2.chr15                 84032671  9 +  91571448 GAAGCCA-----GA
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6806175  9 -  14545593 GAAGTCA-----GA
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134103956  5 + 140925898 GAAGT---------
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57836607  5 -  64289059 GAAGT---------
i canFam3.chr17                C 0 C 0
s pteAle1.KB030580              19409484  9 -  23789964 GCCGCCA-----GA
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27616383 14 -  46401353 ATGTTTACTGATGC
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9963712 14 +  24341844 GCGCTTACTGACGC
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1030093 10 -   2788317 -TGCTTACTGA---
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530522555  2 + 748055161 AA------------
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    516196 14 +   3395230 AAGGATAAATCTAC
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL109592                 96900 14 -    117391 AAGGATAAGTCTAC
i macEug2.GL109592             C 0 C 0
s ornAna1.chr4                  58038951  7 -  58987262 -------TGAAAAC
i ornAna1.chr4                 C 0 C 0
s cheMyd1.KB479743               1969004 14 +   4979691 gcgaatacagacta
i cheMyd1.KB479743             n 723 C 0
e musFur1.GL896914              13608258 790 -  19722643 I
e vicPac2.KB632437              19208862  0 -  22931326 C
e camFer1.KB017763               2803253  0 -   6207710 C
e odoRosDiv1.KB229025            3030324 574 +   4816872 I
e tetNig2.chr10                  6371819 2907 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chr1A                 24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195           44258 5209 +     59083 T
e pseHum1.KB221193               9789407 578 +  32995986 T
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375358               1019718 687 +   1462937 T
e allMis1.JH737798                 80260 1661 +    106177 T
e falPer1.KB391107               2216004 600 -   3101084 T
e falChe1.KB398074               4263387 600 -   7151304 T
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr1                  24929349 4997 + 204065131 T
e anaPla1.KB742960                141378  0 +    531124 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e chrPic2.chr2                  18523590 544 -  68452538 T
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr3                  13879677 44 - 112617285 I
e orcOrc1.KB316907              10838995  0 +  17242564 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-186578.000000
s hg38.chr8_KI270814v1_alt         82526 17 +    141812 --AGGCAGTGGCCTCCCT-----------G
s ponAbe2.chr8                  59052055 17 + 153482349 --AGGCAGCTCCCTCCCT-----------G
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48130358 17 + 100215132 --AGGCAGCTGCCTCCCT-----------G
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99337963 15 + 108792865 --AGGCAGAGCCCGCAC-------------
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24004077 15 +  27210278 --AGGCAGAGCCCGCAC-------------
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21185435 26 -  23169006 --CAGCAGCTCAGTCCCCATGTGC--ATGG
i otoGar3.GL873541             C 0 C 0
s equCab2.chr15                 84032680 15 +  91571448 --AGGCA-TGCTCCCCG------------G
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6806184 16 -  14545593 --AGACAGTGCTCATCA------------G
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134103961 15 + 140925898 --GTGCA-TTCTCCACA------------G
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57836612 12 -  64289059 --GTGCA-CTCCCC---------------G
i canFam3.chr17                C 0 C 0
s pteAle1.KB030580              19409493 13 -  23789964 --CCGCGGTGCACT---------------G
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27616397 26 -  46401353 --TTCTAGATCCTTTTATTCCCCC--GCGA
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9963726 27 +  24341844 --TTACATATCCTTTTATTCCCTC-GGCAC
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1030103 25 -   2788317 ---GAAAAAGCGCTCTCTTTCCCC--ACAA
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530522557 24 + 748055161 ------AAGAGACCTAATGAGGGATAAAAG
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    516210 28 +   3395230 --CTATAAGATTCCTAATGAGAAATAAAAG
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL109592                 96914 28 -    117391 --TTGCAAGACTCCTAATGAGAGACAAATG
i macEug2.GL109592             C 0 C 0
s ornAna1.chr4                  58038958 23 -  58987262 --ATGCTGAAATCTTACTCTGATA-----A
i ornAna1.chr4                 C 0 C 0
s cheMyd1.KB479743               1969018 17 +   4979691 --atacggctgttactct-----------g
i cheMyd1.KB479743             C 0 C 0
s tetNig2.chr14                 10107048 17 +  10246949 AGGTACTGAGGGCACAG-------------
i tetNig2.chr14                n 2907 C 0
e musFur1.GL896914              13608258 790 -  19722643 I
e vicPac2.KB632437              19208862  0 -  22931326 C
e camFer1.KB017763               2803253  0 -   6207710 C
e odoRosDiv1.KB229025            3030324 574 +   4816872 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422276               4185134 338 -  16571924 T
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chr1A                 24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195           44258 5209 +     59083 T
e pseHum1.KB221193               9789407 578 +  32995986 T
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375358               1019718 687 +   1462937 T
e allMis1.JH737798                 80260 1661 +    106177 T
e falPer1.KB391107               2216004 600 -   3101084 T
e falChe1.KB398074               4263387 600 -   7151304 T
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr1                  24929349 4997 + 204065131 T
e anaPla1.KB742960                141378  0 +    531124 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e chrPic2.chr2                  18523590 544 -  68452538 T
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr3                  13879677 44 - 112617285 I
e orcOrc1.KB316907              10838995  0 +  17242564 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-608799.000000
s hg38.chr8_KI270814v1_alt         82543 36 +    141812 GGGC-CT--------------------------CCCACAGGTGAGGGCTG-----ATGGGACCTG-CT------------------------------------T
s ponAbe2.chr8                  59052072 36 + 153482349 GGGC-CT--------------------------CCCACAGGTGAGGGCTG-----ATGGGACTTG-CT------------------------------------T
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48130375 36 + 100215132 GGGT-CT--------------------------CCCACAGGTGAGGGCTG-----ATGGGACCTG-CT------------------------------------T
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99337978 22 + 108792865 -AGC-CT-------------------------------------GGGCTG------CAGGACCCG-CC-------------------------------------
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24004092 22 +  27210278 -AGC-CT-------------------------------------GGGCTG------CAGGACCCG-CC-------------------------------------
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21185461 68 -  23169006 GGGT-CG------------------------------CAGGTGGGGGCAG-----TCTGTGCCTG-CCCAGCCACTGCATGTTCCTAGTGTCCCTAGTGCATGTC
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19208862  7 -  22931326 -------------------------------------------GGGGCAG-------------------------------------------------------
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2803253  7 -   6207710 -------------------------------------------GGGGCAG-------------------------------------------------------
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10838995  5 +  17242564 ---------------------------------------------GGCGG-------------------------------------------------------
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84032695 53 +  91571448 GACA-CGGC-------AGGCTCACCACAGCACGCGTGAAGGTGAAGGCTG-----------GCTG-CTGGCAG--------------------------------
i equCab2.chr15                C 0 I 19
s cerSim1.JH767782               6806200 53 -  14545593 GAGA-CCGC-------ACGCTCCCCTTGGTGCACGAGCAGGTGAAGGCAG-----------GCTG-CTTGTAG--------------------------------
i cerSim1.JH767782             C 0 I 26
s felCat8.chrA3                134103976 34 + 140925898 GAGT-TGAC-------ACAC-------------------GGTAAAGACCG-----------GCTG-CAAGACA--------------------------------
i felCat8.chrA3                C 0 I 39
s canFam3.chr17                 57836624 35 -  64289059 GAGT-TCAT-------GTGCT------------------GGTGAAGGCAG-----------CCCA-CCTGGAA--------------------------------
i canFam3.chr17                C 0 I 450
s pteAle1.KB030580              19409506 43 -  23789964 GGGA-CC----------CGCTCCCGCAGGGGTTCAGG--GGCGGGGCGGC-----------GCTG-CC-------------------------------------
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27616423 28 -  46401353 GAGT-TC-------------------------ATGTGCAGGTGACAGCAG-----------ACTG----------------------------------------
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9963753 37 +  24341844 GATT-TC-------------------------ACGTGCAGGTGACAGCAG-----------ACTGCCTTGCCA-------------------------------T
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1030128 36 -   2788317 GAGT-TC-------------------------ACATGCAGGTGGTGGCAA-----------GTTG-CCTGCAG-------------------------------T
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530522581 53 + 748055161 CAGA-TTTC-------ATTTGCATCCTAGGCTCTTTACCAGCACTGGACA-----TCTGTGCTTG-T--------------------------------------
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    516238 53 +   3395230 CAGA-TTTC-------ATTTGCTTGCTAGGCTCTTTACCGGCAATGGACA-----TCTGTGCTTG-T--------------------------------------
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL109592                 96942 54 -    117391 CAGATTTTC-------ATTTGCTTCCTAGGCTCTTTACCAGCACTGGACA-----TCTACACTTG-C--------------------------------------
i macEug2.GL109592             C 0 C 0
s ornAna1.chr4                  58038981 57 -  58987262 TGGG-CAGA-------CGGCACTAATAGAACATCTTGGAGAAAAAGGTTAGTCAAATGATTTTTA----------------------------------------
i ornAna1.chr4                 C 0 I 7
s cheMyd1.KB479743               1969035 41 +   4979691 aaac-cttttt----aagaATATTAATGGAACAATTGTATTCTATG-----------------------------------------------------------
i cheMyd1.KB479743             C 0 C 0
s tetNig2.chr14                 10107065 43 +  10246949 GGGC-CTACCGTTAAAAGTCACATGACGGACTCCtgggaggtca-------------------------------------------------------------
i tetNig2.chr14                C 0 C 0
s neoBri1.JH422308               3491653 29 -   5414369 GAGC-CTCCTG--------CAAATATAGAGCTGTTAG------A-------------------------------------------------------------
i neoBri1.JH422308             n 338 C 0
e musFur1.GL896914              13608258 790 -  19722643 I
e odoRosDiv1.KB229025            3030324 574 +   4816872 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chr1A                 24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195           44258 5209 +     59083 T
e pseHum1.KB221193               9789407 578 +  32995986 T
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375358               1019718 687 +   1462937 T
e allMis1.JH737798                 80260 1661 +    106177 T
e falPer1.KB391107               2216004 600 -   3101084 T
e falChe1.KB398074               4263387 600 -   7151304 T
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr1                  24929349 4997 + 204065131 T
e anaPla1.KB742960                141378  0 +    531124 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e chrPic2.chr2                  18523590 544 -  68452538 T
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr3                  13879677 44 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=6818.000000
s hg38.chr8_KI270814v1_alt         82579 4 +    141812 TTTG
s ponAbe2.chr8                  59052108 4 + 153482349 TTTG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48130411 4 + 100215132 TTTG
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99338000 3 + 108792865 -TTG
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24004114 4 +  27210278 TTTG
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21185529 4 -  23169006 CCTC
i otoGar3.GL873541             C 0 C 0
s loxAfr3.scaffold_20           27616451 2 -  46401353 --TG
i loxAfr3.scaffold_20          C 0 I 5
s triMan1.JH594629               9963790 4 +  24341844 CTTG
i triMan1.JH594629             C 0 I 20
s dasNov3.JH567436               1030164 4 -   2788317 CTTG
i dasNov3.JH567436             C 0 I 21
s tetNig2.chr14                 10107108 2 +  10246949 --tg
i tetNig2.chr14                C 0 C 0
s neoBri1.JH422308               3491682 2 -   5414369 --CG
i neoBri1.JH422308             C 0 C 0
s gasAcu1.chrXV                  6158194 4 +  16198764 TTTT
i gasAcu1.chrXV                N 0 C 0
e musFur1.GL896914              13608258 790 -  19722643 I
e vicPac2.KB632437              19208869 0 -  22931326 C
e camFer1.KB017763               2803260 0 -   6207710 C
e odoRosDiv1.KB229025            3030324 574 +   4816872 I
e canFam3.chr17                 57836659 450 -  64289059 I
e felCat8.chrA3                134104010 39 + 140925898 I
e ornAna1.chr4                  58039038 7 -  58987262 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chr1A                 24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195           44258 5209 +     59083 T
e pseHum1.KB221193               9789407 578 +  32995986 T
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375358               1019718 687 +   1462937 T
e allMis1.JH737798                 80260 1661 +    106177 T
e falPer1.KB391107               2216004 600 -   3101084 T
e falChe1.KB398074               4263387 600 -   7151304 T
e macEug2.GL109592                 96996 0 -    117391 C
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e sarHar1.chr1_GL834688_random    516291 0 +   3395230 C
e melGal1.chr1                  24929349 4997 + 204065131 T
e anaPla1.KB742960                141378 0 +    531124 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1969076 0 +   4979691 C
e chrPic2.chr2                  18523590 544 -  68452538 T
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530522634 0 + 748055161 C
e taeGut2.chr3                  13879677 44 - 112617285 I
e equCab2.chr15                 84032748 19 +  91571448 I
e pteAle1.KB030580              19409549 0 -  23789964 C
e cerSim1.JH767782               6806253 26 -  14545593 I
e orcOrc1.KB316907              10839000 0 +  17242564 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=697.000000
s hg38.chr8_KI270814v1_alt         82583 1 +    141812 C
s ponAbe2.chr8                  59052112 1 + 153482349 C
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48130415 1 + 100215132 C
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99338003 1 + 108792865 C
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24004118 1 +  27210278 C
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21185533 1 -  23169006 C
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19208869 1 -  22931326 G
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2803260 1 -   6207710 G
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10839000 1 +  17242564 A
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84032767 1 +  91571448 C
i equCab2.chr15                I 19 C 0
s cerSim1.JH767782               6806279 1 -  14545593 C
i cerSim1.JH767782             I 26 C 0
s canFam3.chr17                 57837109 1 -  64289059 C
i canFam3.chr17                I 450 C 0
s loxAfr3.scaffold_20           27616458 1 -  46401353 C
i loxAfr3.scaffold_20          I 5 C 0
s triMan1.JH594629               9963814 1 +  24341844 C
i triMan1.JH594629             I 20 C 0
s dasNov3.JH567436               1030189 1 -   2788317 C
i dasNov3.JH567436             I 21 C 0
s monDom5.chr1                 530522634 1 + 748055161 T
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    516291 1 +   3395230 T
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL109592                 96996 1 -    117391 C
i macEug2.GL109592             C 0 C 0
s ornAna1.chr4                  58039045 1 -  58987262 C
i ornAna1.chr4                 I 7 C 0
s cheMyd1.KB479743               1969076 1 +   4979691 T
i cheMyd1.KB479743             C 0 C 0
s tetNig2.chr14                 10107110 1 +  10246949 t
i tetNig2.chr14                C 0 I 2
s neoBri1.JH422308               3491684 1 -   5414369 T
i neoBri1.JH422308             C 0 I 3
s gasAcu1.chrXV                  6158198 1 +  16198764 T
i gasAcu1.chrXV                C 0 C 0
e musFur1.GL896914              13608258 790 -  19722643 I
e odoRosDiv1.KB229025            3030324 574 +   4816872 I
e felCat8.chrA3                134104010 39 + 140925898 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720588               2493684 338 +   2778784 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chr1A                 24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195           44258 5209 +     59083 T
e pseHum1.KB221193               9789407 578 +  32995986 T
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375358               1019718 687 +   1462937 T
e allMis1.JH737798                 80260 1661 +    106177 T
e falPer1.KB391107               2216004 600 -   3101084 T
e falChe1.KB398074               4263387 600 -   7151304 T
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr1                  24929349 4997 + 204065131 T
e anaPla1.KB742960                141378 0 +    531124 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e chrPic2.chr2                  18523590 544 -  68452538 T
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr3                  13879677 44 - 112617285 I
e pteAle1.KB030580              19409549 0 -  23789964 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=31440.000000
s hg38.chr8_KI270814v1_alt         82584 2 +    141812 CA
s ponAbe2.chr8                  59052113 2 + 153482349 CA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48130416 2 + 100215132 CA
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99338004 2 + 108792865 CA
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24004119 2 +  27210278 CA
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21185534 2 -  23169006 CA
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19208870 2 -  22931326 CG
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2803261 2 -   6207710 CA
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10839001 2 +  17242564 CG
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84032768 2 +  91571448 CA
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6806280 2 -  14545593 CA
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134104049 2 + 140925898 ca
i felCat8.chrA3                I 39 C 0
s canFam3.chr17                 57837110 2 -  64289059 CT
i canFam3.chr17                C 0 C 0
s pteAle1.KB030580              19409549 1 -  23789964 -C
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27616459 2 -  46401353 CA
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9963815 2 +  24341844 CA
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1030190 2 -   2788317 CA
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530522635 2 + 748055161 CA
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    516292 2 +   3395230 CA
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL109592                 96997 2 -    117391 CA
i macEug2.GL109592             C 0 C 0
s ornAna1.chr4                  58039046 2 -  58987262 CA
i ornAna1.chr4                 C 0 C 0
s taeGut2.chr3                  13879721 2 - 112617285 CT
i taeGut2.chr3                 I 44 C 0
s cheMyd1.KB479743               1969077 1 +   4979691 -T
i cheMyd1.KB479743             C 0 I 1
s tetNig2.chr14                 10107113 2 +  10246949 cg
i tetNig2.chr14                I 2 C 0
s neoBri1.JH422308               3491688 2 -   5414369 CA
i neoBri1.JH422308             I 3 C 0
s mayZeb1.JH720522                609213 2 -   6649201 CA
i mayZeb1.JH720522             n 338 C 0
s gasAcu1.chrXV                  6158199 2 +  16198764 CG
i gasAcu1.chrXV                C 0 C 0
e musFur1.GL896914              13608258 790 -  19722643 I
e odoRosDiv1.KB229025            3030324 574 +   4816872 I
e punNye1.JH419232               4767720 338 +   5065651 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chr1A                 24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195           44258 5209 +     59083 T
e pseHum1.KB221193               9789407 578 +  32995986 T
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375358               1019718 687 +   1462937 T
e allMis1.JH737798                 80260 1661 +    106177 T
e falPer1.KB391107               2216004 600 -   3101084 T
e falChe1.KB398074               4263387 600 -   7151304 T
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr1                  24929349 4997 + 204065131 T
e anaPla1.KB742960                141378 0 +    531124 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e chrPic2.chr2                  18523590 544 -  68452538 T
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=24729.000000
s hg38.chr8_KI270814v1_alt         82586 1 +    141812 G
s ponAbe2.chr8                  59052115 1 + 153482349 G
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48130418 1 + 100215132 G
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99338006 1 + 108792865 G
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24004121 1 +  27210278 G
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21185536 1 -  23169006 G
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19208872 1 -  22931326 G
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2803263 1 -   6207710 G
i camFer1.KB017763             C 0 C 0
s equCab2.chr15                 84032770 1 +  91571448 G
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6806282 1 -  14545593 G
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134104051 1 + 140925898 g
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57837112 1 -  64289059 G
i canFam3.chr17                C 0 C 0
s pteAle1.KB030580              19409550 1 -  23789964 G
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27616461 1 -  46401353 A
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9963817 1 +  24341844 G
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1030192 1 -   2788317 G
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530522637 1 + 748055161 G
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    516294 1 +   3395230 G
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL109592                 96999 1 -    117391 G
i macEug2.GL109592             C 0 C 0
s ornAna1.chr4                  58039048 1 -  58987262 G
i ornAna1.chr4                 C 0 C 0
s colLiv1.KB375528               5867052 1 -  25666195 G
i colLiv1.KB375528             n 687 C 0
s falChe1.KB397350               1707092 1 -   3649919 G
i falChe1.KB397350             n 600 C 0
s falPer1.KB390952               2753738 1 -  18327016 G
i falPer1.KB390952             n 600 C 0
s taeGut2.chr3                  13879723 1 - 112617285 G
i taeGut2.chr3                 C 0 C 0
s anaPla1.KB742696               1244387 1 -   1270250 G
i anaPla1.KB742696             n 0 C 0
s tetNig2.chr14                 10107115 1 +  10246949 g
i tetNig2.chr14                C 0 C 0
s neoBri1.JH422308               3491690 1 -   5414369 A
i neoBri1.JH422308             C 0 C 0
s mayZeb1.JH720522                609215 1 -   6649201 A
i mayZeb1.JH720522             C 0 C 0
s gasAcu1.chrXV                  6158201 1 +  16198764 T
i gasAcu1.chrXV                C 0 C 0
e musFur1.GL896914              13608258 790 -  19722643 I
e odoRosDiv1.KB229025            3030324 574 +   4816872 I
e punNye1.JH419232               4767720 338 +   5065651 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chr1A                 24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195           44258 5209 +     59083 T
e pseHum1.KB221193               9789407 578 +  32995986 T
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e allMis1.JH737798                 80260 1661 +    106177 T
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr1                  24929349 4997 + 204065131 T
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1969078 1 +   4979691 I
e chrPic2.chr2                  18523590 544 -  68452538 T
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e orcOrc1.KB316907              10839003 0 +  17242564 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-25769.000000
s hg38.chr8_KI270814v1_alt         82587 2 +    141812 CA
s ponAbe2.chr8                  59052116 2 + 153482349 CA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48130419 2 + 100215132 CA
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99338007 2 + 108792865 TG
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24004122 2 +  27210278 TG
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21185537 2 -  23169006 GG
i otoGar3.GL873541             C 0 C 0
s equCab2.chr15                 84032771 2 +  91571448 CC
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6806283 2 -  14545593 CC
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134104052 2 + 140925898 ca
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57837113 2 -  64289059 GG
i canFam3.chr17                C 0 C 0
s pteAle1.KB030580              19409551 1 -  23789964 C-
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27616462 2 -  46401353 TA
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9963818 2 +  24341844 CA
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1030193 2 -   2788317 TC
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530522638 2 + 748055161 CA
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    516295 2 +   3395230 CA
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL109592                 97000 2 -    117391 CA
i macEug2.GL109592             C 0 C 0
s ornAna1.chr4                  58039049 2 -  58987262 TT
i ornAna1.chr4                 C 0 C 0
s colLiv1.KB375528               5867053 2 -  25666195 AA
i colLiv1.KB375528             C 0 I 1
s falChe1.KB397350               1707093 2 -   3649919 AA
i falChe1.KB397350             C 0 I 1
s falPer1.KB390952               2753739 2 -  18327016 AA
i falPer1.KB390952             C 0 I 1
s taeGut2.chr3                  13879724 2 - 112617285 AA
i taeGut2.chr3                 C 0 I 1
s anaPla1.KB742696               1244388 2 -   1270250 CA
i anaPla1.KB742696             C 0 I 1
s cheMyd1.KB479743               1969079 2 +   4979691 AA
i cheMyd1.KB479743             I 1 I 1
s latCha1.JH128047                348935 2 -    600338 aa
i latCha1.JH128047             N 0 C 0
s tetNig2.chr14                 10107116 2 +  10246949 cg
i tetNig2.chr14                C 0 n 0
s neoBri1.JH422308               3491691 2 -   5414369 AG
i neoBri1.JH422308             C 0 C 0
s mayZeb1.JH720522                609216 2 -   6649201 AG
i mayZeb1.JH720522             C 0 C 0
s gasAcu1.chrXV                  6158202 2 +  16198764 CG
i gasAcu1.chrXV                C 0 C 0
e musFur1.GL896914              13608258 790 -  19722643 I
e vicPac2.KB632437              19208873 0 -  22931326 C
e camFer1.KB017763               2803264 0 -   6207710 C
e odoRosDiv1.KB229025            3030324 574 +   4816872 I
e punNye1.JH419232               4767720 338 +   5065651 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chr1A                 24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195           44258 5209 +     59083 T
e pseHum1.KB221193               9789407 578 +  32995986 T
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e allMis1.JH737798                 80260 1661 +    106177 T
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr1                  24929349 4997 + 204065131 T
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e chrPic2.chr2                  18523590 544 -  68452538 T
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e orcOrc1.KB316907              10839003 0 +  17242564 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-39989.000000
s hg38.chr8_KI270814v1_alt         82589 1 +    141812 -A
s ponAbe2.chr8                  59052118 1 + 153482349 -A
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48130421 1 + 100215132 -A
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99338009 1 + 108792865 -C
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24004124 1 +  27210278 -C
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21185539 1 -  23169006 -T
i otoGar3.GL873541             C 0 C 0
s equCab2.chr15                 84032773 1 +  91571448 -T
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6806285 1 -  14545593 -T
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134104054 1 + 140925898 -a
i felCat8.chrA3                C 0 I 15
s canFam3.chr17                 57837115 1 -  64289059 -G
i canFam3.chr17                C 0 C 0
s loxAfr3.scaffold_20           27616464 1 -  46401353 -T
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9963820 1 +  24341844 -T
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1030195 1 -   2788317 -T
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530522640 1 + 748055161 -T
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    516297 1 +   3395230 -T
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL109592                 97002 1 -    117391 -T
i macEug2.GL109592             C 0 C 0
s tetNig2.chr10                  6374726 1 +  13272281 A-
i tetNig2.chr10                I 2907 C 0
s neoBri1.JH422308               3491693 1 -   5414369 G-
i neoBri1.JH422308             C 0 C 0
s mayZeb1.JH720522                609218 1 -   6649201 G-
i mayZeb1.JH720522             C 0 C 0
s gasAcu1.chrXV                  6158204 1 +  16198764 A-
i gasAcu1.chrXV                C 0 C 0
s astMex1.KB882259               1463434 1 -   1566646 A-
i astMex1.KB882259             N 0 C 0
e musFur1.GL896914              13608258 790 -  19722643 I
e vicPac2.KB632437              19208873 0 -  22931326 C
e camFer1.KB017763               2803264 0 -   6207710 C
e odoRosDiv1.KB229025            3030324 574 +   4816872 I
e ornAna1.chr4                  58039051 0 -  58987262 C
e punNye1.JH419232               4767720 338 +   5065651 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e fr3.chr9                       3741472 428 -  13922460 T
e ficAlb2.chr1A                 24321325 738 +  74947036 T
e anoCar2.chrUn_GL344195           44258 5209 +     59083 T
e pseHum1.KB221193               9789407 578 +  32995986 T
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867055 1 -  25666195 I
e allMis1.JH737798                 80260 1661 +    106177 T
e falPer1.KB390952               2753741 1 -  18327016 I
e falChe1.KB397350               1707095 1 -   3649919 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr1                  24929349 4997 + 204065131 T
e anaPla1.KB742696               1244390 1 -   1270250 I
e latCha1.JH128047                348937 0 -    600338 C
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1969081 1 +   4979691 I
e chrPic2.chr2                  18523590 544 -  68452538 T
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr3                  13879726 1 - 112617285 I
e pteAle1.KB030580              19409552 0 -  23789964 C
e orcOrc1.KB316907              10839003 0 +  17242564 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=152709.000000
s hg38.chr8_KI270814v1_alt         82590 3 +    141812 CTT
s ponAbe2.chr8                  59052119 3 + 153482349 CTT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48130422 3 + 100215132 CTT
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99338010 3 + 108792865 CTT
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24004125 3 +  27210278 CTC
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21185540 3 -  23169006 CTC
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19208873 3 -  22931326 CCC
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2803264 3 -   6207710 CCC
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10839003 1 +  17242564 --T
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84032774 3 +  91571448 CTT
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6806286 3 -  14545593 CTT
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134104070 3 + 140925898 ctc
i felCat8.chrA3                I 15 C 0
s canFam3.chr17                 57837116 3 -  64289059 CTC
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13609048 3 -  19722643 CTC
i musFur1.GL896914             I 790 C 0
s odoRosDiv1.KB229025            3030898 3 +   4816872 CTC
i odoRosDiv1.KB229025          I 574 C 0
s pteAle1.KB030580              19409552 3 -  23789964 CTC
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27616465 3 -  46401353 CTT
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9963821 3 +  24341844 CTC
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1030196 3 -   2788317 CTT
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530522641 3 + 748055161 CTT
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    516298 3 +   3395230 CTT
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL109592                 97003 3 -    117391 CTT
i macEug2.GL109592             C 0 C 0
s ornAna1.chr4                  58039051 3 -  58987262 CTT
i ornAna1.chr4                 C 0 C 0
s colLiv1.KB375528               5867056 3 -  25666195 CTT
i colLiv1.KB375528             I 1 C 0
s falChe1.KB397350               1707096 3 -   3649919 CTC
i falChe1.KB397350             I 1 C 0
s falPer1.KB390952               2753742 3 -  18327016 CTC
i falPer1.KB390952             I 1 C 0
s ficAlb2.chr2                 148475959 3 + 157563209 CTT
i ficAlb2.chr2                 n 738 C 0
s taeGut2.chr3                  13879727 3 - 112617285 CTT
i taeGut2.chr3                 I 1 C 0
s pseHum1.KB221189              55279963 3 -  63311091 ctt
i pseHum1.KB221189             n 578 C 0
s anaPla1.KB742696               1244391 3 -   1270250 CTT
i anaPla1.KB742696             I 1 C 0
s melGal1.chr3                  91311396 3 + 100405168 CTT
i melGal1.chr3                 n 4997 C 0
s allMis1.JH731579                503290 3 -    636928 CTT
i allMis1.JH731579             n 1661 C 0
s cheMyd1.KB479743               1969082 3 +   4979691 CTT
i cheMyd1.KB479743             I 1 C 0
s chrPic2.chrUn_KK088237v1       5677076 3 -  22294289 CTT
i chrPic2.chrUn_KK088237v1     n 544 C 0
s anoCar2.chr1                 148577329 3 + 263920458 CTT
i anoCar2.chr1                 n 5209 C 0
s latCha1.JH128047                348937 3 -    600338 caa
i latCha1.JH128047             C 0 C 0
s tetNig2.chr10                  6374727 3 +  13272281 CCG
i tetNig2.chr10                C 0 C 0
s fr3.HE591725                    288635 3 -    411779 CTC
i fr3.HE591725                 n 428 C 0
s oreNil2.chrLG9                14879056 3 +  20956653 CTT
i oreNil2.chrLG9               N 0 C 0
s neoBri1.JH422308               3491694 3 -   5414369 CCT
i neoBri1.JH422308             C 0 C 0
s mayZeb1.JH720522                609219 3 -   6649201 CCT
i mayZeb1.JH720522             C 0 C 0
s oryLat2.chr22                 17713551 3 -  28810691 CTG
i oryLat2.chr22                N 0 C 0
s xipMac1.JH556722                318906 3 -   2306555 CTG
i xipMac1.JH556722             N 0 C 0
s gasAcu1.chrXV                  6158205 3 +  16198764 CTA
i gasAcu1.chrXV                C 0 C 0
s danRer10.chr17                18108069 3 -  53345113 CTG
i danRer10.chr17               N 0 C 0
s astMex1.KB882259               1463435 3 -   1566646 CTC
i astMex1.KB882259             C 0 C 0
e punNye1.JH419232               4767720 338 +   5065651 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=590173.000000
s hg38.chr8_KI270814v1_alt         82593 7 +    141812 ACCTGGT
s ponAbe2.chr8                  59052122 7 + 153482349 ACCTGGT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48130425 7 + 100215132 ACCTGGT
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99338013 7 + 108792865 ACCTCAC
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24004128 7 +  27210278 ACCTCAC
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21185543 7 -  23169006 ACCTCGC
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19208876 7 -  22931326 ACCTCGC
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2803267 7 -   6207710 ACCTCGC
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10839004 7 +  17242564 ACCTCGC
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84032777 7 +  91571448 ACCTCAC
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6806289 7 -  14545593 ACCTCGC
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134104073 7 + 140925898 acctcgc
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57837119 7 -  64289059 ACCTCGC
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13609051 7 -  19722643 ACCTCGC
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3030901 7 +   4816872 ACCTCGC
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19409555 7 -  23789964 ACCTCGC
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27616468 7 -  46401353 ACCTCGC
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9963824 7 +  24341844 ACCTCGC
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1030199 7 -   2788317 ACCTCGC
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530522644 7 + 748055161 ACCTCAC
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    516301 7 +   3395230 ACCTCGC
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL109592                 97006 7 -    117391 ACCTCGC
i macEug2.GL109592             C 0 C 0
s ornAna1.chr4                  58039054 7 -  58987262 ACTTCAC
i ornAna1.chr4                 C 0 C 0
s colLiv1.KB375528               5867059 7 -  25666195 ACCTCAC
i colLiv1.KB375528             C 0 C 0
s falChe1.KB397350               1707099 7 -   3649919 ACCTCAC
i falChe1.KB397350             C 0 C 0
s falPer1.KB390952               2753745 7 -  18327016 ACCTCAC
i falPer1.KB390952             C 0 C 0
s ficAlb2.chr2                 148475962 7 + 157563209 ACTTCAC
i ficAlb2.chr2                 C 0 C 0
s taeGut2.chr3                  13879730 7 - 112617285 ACCTCAC
i taeGut2.chr3                 C 0 C 0
s pseHum1.KB221189              55279966 7 -  63311091 aCTTCAC
i pseHum1.KB221189             C 0 C 0
s anaPla1.KB742696               1244394 7 -   1270250 ACCTCAC
i anaPla1.KB742696             C 0 C 0
s melGal1.chr3                  91311399 7 + 100405168 ACTTCAC
i melGal1.chr3                 C 0 C 0
s allMis1.JH731579                503293 7 -    636928 ACCTCAC
i allMis1.JH731579             C 0 C 0
s cheMyd1.KB479743               1969085 7 +   4979691 ACCTCAC
i cheMyd1.KB479743             C 0 C 0
s chrPic2.chrUn_KK088237v1       5677079 7 -  22294289 ACTTCGC
i chrPic2.chrUn_KK088237v1     C 0 C 0
s anoCar2.chr1                 148577332 7 + 263920458 ACCTCAC
i anoCar2.chr1                 C 0 C 0
s latCha1.JH128047                348940 7 -    600338 acctcaC
i latCha1.JH128047             C 0 C 0
s tetNig2.chr10                  6374730 7 +  13272281 ACCTCGc
i tetNig2.chr10                C 0 C 0
s fr3.HE591725                    288638 7 -    411779 ACCTCGC
i fr3.HE591725                 C 0 C 0
s oreNil2.chrLG9                14879059 7 +  20956653 ACCTCGC
i oreNil2.chrLG9               C 0 C 0
s neoBri1.JH422308               3491697 7 -   5414369 ACCTCGC
i neoBri1.JH422308             C 0 C 0
s mayZeb1.JH720522                609222 7 -   6649201 ACCTCGC
i mayZeb1.JH720522             C 0 C 0
s oryLat2.chr22                 17713554 7 -  28810691 ACCTCAC
i oryLat2.chr22                C 0 C 0
s xipMac1.JH556722                318909 7 -   2306555 ACCTCGC
i xipMac1.JH556722             C 0 C 0
s gasAcu1.chrXV                  6158208 7 +  16198764 ACCTCAC
i gasAcu1.chrXV                C 0 C 0
s danRer10.chr17                18108072 7 -  53345113 ACCTCAC
i danRer10.chr17               C 0 C 0
s astMex1.KB882259               1463438 7 -   1566646 ACCTCGC
i astMex1.KB882259             C 0 C 0
s lepOcu1.chrLG1                19987912 7 -  69065196 ACCTCGC
i lepOcu1.chrLG1               N 0 C 0
e punNye1.JH419232               4767720 338 +   5065651 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120500                511214 428 +    663757 T
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=3373640.000000
s hg38.chr8_KI270814v1_alt         82600 42 +    141812 ACATCCGTAGCTGGAAGAAGTGCCTCTCCTTTTCCATCTCTT
s ponAbe2.chr8                  59052129 42 + 153482349 ACATCTGTAGCTGGAAGAAGTGCCTCTCCTTTTCTGTCTCTT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48130432 42 + 100215132 ACATCTGTGGCTGGAAGAAGTGCCTCTCCTTTTCCATCTCTT
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99338020 42 + 108792865 ACATCTGTAGCTGGAAGAAGCGCCTCTCCTTTTCCATCTCTT
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24004135 42 +  27210278 ACATCTGTAGCTGGAAGAAGCGCCTCTCCTTTTCCATCTCTT
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21185550 42 -  23169006 ACATCTGCAGCTGGAAGAACCGCCTCTCCTTCTCCATCTCTT
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19208883 42 -  22931326 ACATCTGCAGCTGGAAGAACCGGCGCTCCTTCTCCATCTCCT
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2803274 42 -   6207710 ACATCTGCAGCTGGAAGAACCGGCGCTCCTTCTCCATCTCCT
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10839011 42 +  17242564 ACATCTGCAGCTGGAAGAACCGCCGCTCCTTCTCCATCTCCT
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84032784 42 +  91571448 ACATCTGTAGCTGGAATAACCGCCGCTCCTTTTCCATCTCTT
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6806296 42 -  14545593 ACATCTGCAGCTGGAAGAACCGCCGCTCCTTTTCCATCTCTT
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134104080 42 + 140925898 aCATCTGGAGCTGGAAAAGCCGCCTCTCCTTCTCCATCTCTT
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57837126 42 -  64289059 ACATCTGTAGCTGGAAAAGCCGCCGCTCCTTTTCCATCTCTT
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13609058 42 -  19722643 ACATCTGGAGCTGGAAAAGCCGCCGCTCCTTCTCCATCTCTT
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3030908 42 +   4816872 ACATCTGTAGCTGGAAAAGCCGCCGCTCCTTCTCCATCTCTT
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19409562 42 -  23789964 ACATCTGCAGCTGGAAGATCCGCCTCTCCTTCTCCATCTCCT
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27616475 42 -  46401353 ACATCTGTAGCTGGAAGAACCGCCTCTCCTTCTCCATCTCTT
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9963831 42 +  24341844 ACATCTGTAGCTGGAAGAATCGCCTCTCCTTTTCCATCTCTT
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1030206 42 -   2788317 ACATCTGCAGCTGGAAGAACCGTCTCTCCTTTTCCATCTCTT
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530522651 42 + 748055161 ACATTTGTAGCTGGAAGAACCTCCTTTCTTTCTCCATCTCTT
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    516308 42 +   3395230 ACATTTGTAGCTGGAAaaacctcctttctttctccatttctt
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL109592                 97013 42 -    117391 ACATCTGTAGCTGGAAGAACCTCCTTTCTTTCTCCATTTCTT
i macEug2.GL109592             C 0 C 0
s ornAna1.chr4                  58039061 42 -  58987262 ACATCTGAAGCTGAAACAATCTCCTTTCTTTCTCCATCTCCT
i ornAna1.chr4                 C 0 C 0
s colLiv1.KB375528               5867066 42 -  25666195 ACATCTGTAACTGGAAGaacctcctttctttctccatctctt
i colLiv1.KB375528             C 0 C 0
s falChe1.KB397350               1707106 42 -   3649919 ACATCTGTAACTGGAAGaaccttctttccttctccatctctt
i falChe1.KB397350             C 0 C 0
s falPer1.KB390952               2753752 42 -  18327016 ACATCTGTAACTGGAAGaaccttctttccttctccatctctt
i falPer1.KB390952             C 0 C 0
s ficAlb2.chr2                 148475969 42 + 157563209 ACATCTGTAGCTGAAACAGCCGCCTCTCCTTCTCCATTTCCT
i ficAlb2.chr2                 C 0 C 0
s taeGut2.chr3                  13879737 42 - 112617285 ACATCTGTAACTGGAAGAACCTTCTTTCTTTCTCCATCTCTT
i taeGut2.chr3                 C 0 C 0
s pseHum1.KB221189              55279973 42 -  63311091 ACATCTGTAGCTGAAATAGCCGCCGCTCCTTCTCCATTTCCT
i pseHum1.KB221189             C 0 C 0
s anaPla1.KB742696               1244401 42 -   1270250 ACATCTGTAACTGGAAGaaccttctctctttctccatctctt
i anaPla1.KB742696             C 0 C 0
s melGal1.chr3                  91311406 42 + 100405168 ACATCTGCAACTGAAACAGTCGCCTTTCCTTCTCCATTTCTT
i melGal1.chr3                 C 0 C 0
s allMis1.JH731579                503300 42 -    636928 ACATCTGTAGCTGAAAGAACCTCCTTTCTTTCTCCATCTCTT
i allMis1.JH731579             C 0 C 0
s cheMyd1.KB479743               1969092 42 +   4979691 ACATCTGAAGCTGGAAGAATCGTCTTTCTTTCTCCATCTCTT
i cheMyd1.KB479743             C 0 C 0
s chrPic2.chrUn_KK088237v1       5677086 42 -  22294289 ACATCTGCAGCTGAAATAGTCGCCTTTCCTTCTCCATTTCTT
i chrPic2.chrUn_KK088237v1     C 0 C 0
s anoCar2.chr1                 148577339 42 + 263920458 ACATTTGTAGCTGAAAGAACCTCCGCTCTTTTTCCATCTCTT
i anoCar2.chr1                 C 0 C 0
s latCha1.JH128047                348947 42 -    600338 ACATCTGCAACTGGAAAAACCTTCTTTCCTTCTCCATCTCTT
i latCha1.JH128047             C 0 C 0
s tetNig2.chr10                  6374737 42 +  13272281 acatctgcagctggaagaacctcctctccttctccatctcct
i tetNig2.chr10                C 0 C 0
s fr3.HE591725                    288645 42 -    411779 ACATCTGCAGCTGGAAGAGGCGGCGCTCTTTCTCCATTTCCT
i fr3.HE591725                 C 0 C 0
s takFla1.KE120649                 19223 42 -    165821 ACATCTGCAGCTGGAAGAGGCGGCGCTCTTTCTCCATTTCCT
i takFla1.KE120649             n 428 C 0
s oreNil2.chrLG9                14879066 42 +  20956653 ACATCTGGAGCTGAAAGAGACGCCGTTCCTTCTCCATCTCCT
i oreNil2.chrLG9               C 0 C 0
s neoBri1.JH422308               3491704 42 -   5414369 ACATCTGGAGCTGGAAGAGACGCCGTTCCTTCTCCATCTCCT
i neoBri1.JH422308             C 0 C 0
s mayZeb1.JH720522                609229 42 -   6649201 ACATCTGGAGCTGAAAGAGACGCCGTTCCTTCTCCATCTCCT
i mayZeb1.JH720522             C 0 C 0
s oryLat2.chr22                 17713561 42 -  28810691 ACATCTGCAGCTGGAAGAATCTTCTCTCTTTCTCCATCTCCT
i oryLat2.chr22                C 0 C 0
s xipMac1.JH556722                318916 42 -   2306555 ACATTTGCAGCTGGAAGAAGCGTCTCTCCTTCTCCATCTCCT
i xipMac1.JH556722             C 0 C 0
s gasAcu1.chrXV                  6158215 42 +  16198764 ACATCTGCAGCTGGAAGAACCTCCTCTCCTTCTCCATCTCCT
i gasAcu1.chrXV                C 0 C 0
s danRer10.chr17                18108079 42 -  53345113 ACATCTGAAGCTGGAAGAAACGCCGCTCTTTTTCCATCTCTT
i danRer10.chr17               C 0 C 0
s astMex1.KB882259               1463445 42 -   1566646 ACATCTGGAGCTGAAAGAGGCGTCGCTCCTTCTCCATCTCCT
i astMex1.KB882259             C 0 C 0
s lepOcu1.chrLG1                19987919 42 -  69065196 ACATCTGCAGCTGGAAGAAGCGCCGCTCCTTCTCCATCTCCT
i lepOcu1.chrLG1               C 0 C 0
e punNye1.JH419232               4767720 338 +   5065651 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e araMac1.AOUJ01470298               637  0 -       895 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=5398933.000000
s hg38.chr8_KI270814v1_alt         82642 73 +    141812 CAGCAATTTCCATCCTGCTTATTTTAGTCCAGATCATCCCGTGGAGCCTGATGTGTTCCTTTTTCTCCTTTTC
s ponAbe2.chr8                  59052171 73 + 153482349 CAGCAATTTCCATCCTGCTTATTTTAGTCCAGATCATCCTGTAGAGCCTGATGTTTTCCTTTTTCTCCTTTTC
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48130474 73 + 100215132 CAGCAATTTCCATCCTGCTTATTTTAGTCCAGATCATCCCGTGGAGGCTGATGTGTTCCTTTTTCTCCTTTTC
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99338062 73 + 108792865 CGGCAATTTCCGCCCCGCTTATTTCCGTCCGAATCATCCCATGGAGCTTGGCGTGTTCCTTTTTCTCTTTTTC
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24004177 73 +  27210278 CGGCAATTTCCGCCCCGCTTATTTCAGTCCGAATCATTCCATGGAGCTTGGCGTGTTCCTTTTTCTCTTTCTC
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21185592 73 -  23169006 CCGCAATTTCAGCTCCACTTATTTCAGTACGAATCATGCCATGGAGCTTGGCATGTTCCTTTTTCTCCTTTTC
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19208925 73 -  22931326 CCGCGATCTCGGCCCCGCTTATCTCCGTGCGGATCATCCCGTGCAGCTTGGCGTGCTCCTTCTTCTCCTTCTC
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2803316 73 -   6207710 CCGCGATCTCGGCCCCGCTTATCTCCGTGCGGATCATCCCATGCAGCTTGGCGTGCTCCTTCTTCTCCTTCTC
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10839053 73 +  17242564 CTGCGATCTCAGCCCCGCTGATCTCCGTGCGGATCATCCCGTGCAGCTTGGCATGCTCCTTCTTCTCTTTTTC
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84032826 73 +  91571448 CAGCAATTTCAGCCCCACTGATTTCAGTACGGATCATCCCGTGGAGCTTGGCATGTTCCTTTTTCTCCTTTTC
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6806338 73 -  14545593 CAGCAATTTCAGCCCCACTTATTTCAGTACGAATCATCCCATGGAGCTTGGCATGTTCCTTCTTCTCCTTTTC
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134104122 73 + 140925898 CGGCGATTTCAGCCCCGCTGATCTCGGTGCGAATCATCCCATGCAGCTTGGCATGCTCCTTCTTCTCCTTTTC
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57837168 73 -  64289059 CAGCAATTTCAGCCCCACTGATTTCGGTGCGAATCATCCCATGCAGCTTGGCATGCTCCTTCTTCTCCTTTTC
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13609100 73 -  19722643 CAGCGATTTCAGCCCCGCTGATTTCGGTGCGAATCATCCCATGCAGCTTGGCATGTTCCTTCTTCTCCTTCTC
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3030950 73 +   4816872 CGGCAATTTCAGCCCCGCTGATTTCGGTGCGAATCATCCCATGCAGTTTGGCATGCTCCTTCTTCTCTTTTTC
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19409604 73 -  23789964 CCGCGATTTCCGCCCCGCTGATCTCCGTGCGGATCATCCCGTGCAGCCTGGCGTGCTCCTTCTTCTCCTTCTC
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27616517 73 -  46401353 CGGCAATCTCGGCCCCACTTATTTCAGTACGAATCATCCCGTGGAGCTTGGCGTGTTCCTTCTTCTCCTTTTC
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9963873 73 +  24341844 CAGCAATTTCGGCCCCACTTATTTCGGTCCGGATCATCCCATGGAGCTTGGCATGTTCCTTCTTCTCCTTTTC
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1030248 73 -   2788317 CAGCAATTTCAGCCCCACTTATTTCGGTACGAATCATCCCGTGGAGCTTGGCATGTTCCTTTTTCTCCTTTTC
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530522693 73 + 748055161 CAGCAATTTCAGCTCCACTTATTTCTGTGCGAATCATCCCATGAAGCTTGGCATGTTCCTTTTTCTCCTTTTC
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    516350 73 +   3395230 cagcAATTTCAGCTCCACTTATTTCAGTGCGAATCATTCCATGAAGTTTGGCatgttcctttttctccttctc
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL109592                 97055 73 -    117391 CAGCAATTTCAGCTCCACTTATTTCAGTGCGAATCATCCCATGAAGCTTGGCATGTTCCTTTTTCTCCTTTTC
i macEug2.GL109592             C 0 C 0
s ornAna1.chr4                  58039103 73 -  58987262 CCGCTATCTCAGCCCCAGTGATCTCCGTGCGGATCATCCCATGTTGTTTGGCGTGTTCTCTCTTTTCCTTTTC
i ornAna1.chr4                 C 0 n 0
s colLiv1.KB375528               5867108 73 -  25666195 ctgcAATTTCAGCTCCACTTATTTCTGTCCGGATCATCCCATGCAGCTTAGCatgctcttttttctccttctc
i colLiv1.KB375528             C 0 C 0
s falChe1.KB397350               1707148 73 -   3649919 CTGCAATTTCAGCTCCACTTATTTCTGTACGGATCATCCCATGCAGCTTAGCAtgctcttttttctccttctc
i falChe1.KB397350             C 0 C 0
s falPer1.KB390952               2753794 73 -  18327016 CTGCAATTTCAGCTCCACTTATTTCTGTACGGATCATCCCATGCAGCTTAGCatgctcttttttctccttctc
i falPer1.KB390952             C 0 C 0
s ficAlb2.chr2                 148476011 73 + 157563209 CTGCTATCTCAGCTCCTGTTATCTCAGTTCTTATCATCCCATGCTGTTTTGCAtgttctcttttctccttttc
i ficAlb2.chr2                 C 0 C 0
s taeGut2.chr3                  13879779 73 - 112617285 CTGCAATTTCAGCTCCACTTATTTCTGTACGAATCATCCCATGAAGCTTAGCATGCTCTTTTTTCTCCTTCTC
i taeGut2.chr3                 C 0 C 0
s pseHum1.KB221189              55280015 73 -  63311091 CTGCTATCTCAGCTCCCGTTATCTCAGTTCTTATCATCCCGTGCTGTTTCGCatgttctcttttctccttttc
i pseHum1.KB221189             C 0 C 0
s anaPla1.KB742696               1244443 73 -   1270250 ccGCAATTTCAGCTCCACTTATTTCTGTACGGATCATCCCGTGCAGCTTAGCatgctcttttttctccttctc
i anaPla1.KB742696             C 0 C 0
s melGal1.chr3                  91311448 73 + 100405168 CTGCAATCTCAGCTCCTGTAATTTCAGTTCGTATCATCCCATGTTGTTTTGCATGTTCTCTTTTTTCCTTTTC
i melGal1.chr3                 C 0 C 0
s allMis1.JH731579                503342 73 -    636928 CTGCAATTTCAGCTCCACTTATTTCTGTGCGGATCATTCCATGTAGTTTAGCATGCTCCTTTTTCTCCTTCTC
i allMis1.JH731579             C 0 C 0
s cheMyd1.KB479743               1969134 73 +   4979691 CCGCAATTTCAGCTCCACTTATTTCTGTACGGATCATTCCATGTAGCTTAGCATgctcctttttctctttctc
i cheMyd1.KB479743             C 0 C 0
s chrPic2.chrUn_KK088237v1       5677128 73 -  22294289 CTGCTATCTCAGCTCCTGTTATCTCTGTTCTTATCATCCCGTGCTGTTTTGCatgttctcttttttccttttc
i chrPic2.chrUn_KK088237v1     C 0 C 0
s anoCar2.chr1                 148577381 73 + 263920458 CAGCTATTTCAGCCCCACTTATTTCTGTCCGGATCATTCCATGTAATTTTGcatgttcttttttctctttctc
i anoCar2.chr1                 C 0 C 0
s xenTro7.KB021654              26443243 73 + 122929044 CAGCAATTTCAGCCCCACTGATCTCAGTGCGAATCATACCATGCATCTTGGCGTGCTCCTTCTTCTCCTTTTC
i xenTro7.KB021654             N 0 I 5
s latCha1.JH128047                348989 73 -    600338 CAGCAATTTCTGCTCCACTTATTTCAGTTCGGATCATTCCGTGCTGTCTTGcgtgttcctttttttctttttc
i latCha1.JH128047             C 0 C 0
s tetNig2.chr10                  6374779 73 +  13272281 ctgcgATTTCCGCCCCGCTGATTTCCGTCCTGATCATCCCGTGCTGCCTGGCgtgctctttcttctccttctc
i tetNig2.chr10                C 0 C 0
s fr3.HE591725                    288687 73 -    411779 CTGCGATCTCGCCACCGCTGAACTCAGTCCGGATCATTCCGTGCTGCTTGGCATgttccctcttctccttctc
i fr3.HE591725                 C 0 I 344
s takFla1.KE120649                 19265 73 -    165821 CTGCGATCTCGCCACCGCTGAACTCAGTCCGGATCATTCCGTGCTGCTTGGCATgttccctcttctccttctc
i takFla1.KE120649             C 0 I 344
s oreNil2.chrLG9                14879108 73 +  20956653 CTGCGATTTCGGCCCCGGTGATCTCGGTGCGGATCATCCCATGCTGCTTGGCGTGCTCTCGCTTCTCCTTCTC
i oreNil2.chrLG9               C 0 C 0
s neoBri1.JH422308               3491746 73 -   5414369 CTGCGATTTCGGCCCCGGTGATCTCGGTGCGGATCATCCCATGCTGCTTGGCGTGCTCTCGCTTCTCCTTCTC
i neoBri1.JH422308             C 0 C 0
s mayZeb1.JH720522                609271 73 -   6649201 CTGCGATTTCGGCCCCGGTGATCTCGGTGCGGATCATCCCATGCTGCTTGGCGTGCTCTCGCTTCTCCTTCTC
i mayZeb1.JH720522             C 0 C 0
s oryLat2.chr22                 17713603 73 -  28810691 CTGCAATTTCTGCTCCACTGATTTCTGTCCGGATCATCCCGTGTTGTCTGGCGTgctccttcttctccttctc
i oryLat2.chr22                C 0 I 4
s xipMac1.JH556722                318958 73 -   2306555 CGGCTATTTCCGCGCCGCTGATCTCCGTCCGGATCATCCCGTGCTGCCGAGCGTgctccttcttctccttctc
i xipMac1.JH556722             C 0 I 4
s gasAcu1.chrXV                  6158257 73 +  16198764 CAGCAATCTCTGCCCCACTGATCTCCGTCCTGATCATCCCGTGCTGCCTCGCATGCTCCTTCTTCTCTTTCTC
i gasAcu1.chrXV                C 0 C 0
s danRer10.chr17                18108121 73 -  53345113 CTGCTATCTCTGCTCCGCTGATCTCCGTCCGGATCATTCCGTGCTGCCGGGCGTGCTCTTTTTTCTCCTTCTC
i danRer10.chr17               C 0 C 0
s astMex1.KB882259               1463487 73 -   1566646 CAGCAATCTCAGCGCCCGTGATCTCCGTGCGGATCATGCCGTGCTGCTTGGCGTGCTCTCGTTTTTCCTTCTC
i astMex1.KB882259             C 0 C 0
s lepOcu1.chrLG1                19987961 73 -  69065196 CGGCGATCTCCGCCCCGCTGATCTCCGTGCGGATCATCCCGTGCTGCCGGGCGTgctccttcttctccttctc
i lepOcu1.chrLG1               C 0 I 2833
e punNye1.JH419232               4767720 338 +   5065651 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e araMac1.AOUJ01470298               637  0 -       895 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=12534.000000
s hg38.chr8_KI270814v1_alt         82715 1 +    141812 T
s ponAbe2.chr8                  59052244 1 + 153482349 T
i ponAbe2.chr8                 C 0 I 4
s nomLeu3.chr16                 48130547 1 + 100215132 T
i nomLeu3.chr16                C 0 I 4
s calJac3.chr14                 99338135 1 + 108792865 T
i calJac3.chr14                C 0 I 4
s saiBol1.JH378126              24004250 1 +  27210278 T
i saiBol1.JH378126             C 0 I 4
s otoGar3.GL873541              21185665 1 -  23169006 T
i otoGar3.GL873541             C 0 I 4
s vicPac2.KB632437              19208998 1 -  22931326 T
i vicPac2.KB632437             C 0 I 4
s camFer1.KB017763               2803389 1 -   6207710 T
i camFer1.KB017763             C 0 I 4
s orcOrc1.KB316907              10839126 1 +  17242564 T
i orcOrc1.KB316907             C 0 I 4
s equCab2.chr15                 84032899 1 +  91571448 T
i equCab2.chr15                C 0 I 4
s cerSim1.JH767782               6806411 1 -  14545593 T
i cerSim1.JH767782             C 0 I 4
s felCat8.chrA3                134104195 1 + 140925898 A
i felCat8.chrA3                C 0 I 4
s canFam3.chr17                 57837241 1 -  64289059 A
i canFam3.chr17                C 0 I 4
s musFur1.GL896914              13609173 1 -  19722643 A
i musFur1.GL896914             C 0 I 4
s odoRosDiv1.KB229025            3031023 1 +   4816872 A
i odoRosDiv1.KB229025          C 0 I 4
s pteAle1.KB030580              19409677 1 -  23789964 G
i pteAle1.KB030580             C 0 I 4
s loxAfr3.scaffold_20           27616590 1 -  46401353 T
i loxAfr3.scaffold_20          C 0 I 4
s triMan1.JH594629               9963946 1 +  24341844 T
i triMan1.JH594629             C 0 I 4
s dasNov3.JH567436               1030321 1 -   2788317 T
i dasNov3.JH567436             C 0 I 4
s monDom5.chr1                 530522766 1 + 748055161 T
i monDom5.chr1                 C 0 I 4
s sarHar1.chr1_GL834688_random    516423 1 +   3395230 t
i sarHar1.chr1_GL834688_random C 0 I 4
s macEug2.GL109592                 97128 1 -    117391 T
i macEug2.GL109592             C 0 I 4
s colLiv1.KB375528               5867181 1 -  25666195 t
i colLiv1.KB375528             C 0 I 4
s falChe1.KB397350               1707221 1 -   3649919 t
i falChe1.KB397350             C 0 I 4
s falPer1.KB390952               2753867 1 -  18327016 t
i falPer1.KB390952             C 0 I 4
s ficAlb2.chr2                 148476084 1 + 157563209 a
i ficAlb2.chr2                 C 0 I 4
s taeGut2.chr3                  13879852 1 - 112617285 T
i taeGut2.chr3                 C 0 I 4
s pseHum1.KB221189              55280088 1 -  63311091 a
i pseHum1.KB221189             C 0 I 4
s anaPla1.KB742696               1244516 1 -   1270250 t
i anaPla1.KB742696             C 0 I 4
s melGal1.chr3                  91311521 1 + 100405168 A
i melGal1.chr3                 C 0 I 4
s allMis1.JH731579                503415 1 -    636928 T
i allMis1.JH731579             C 0 I 4
s cheMyd1.KB479743               1969207 1 +   4979691 t
i cheMyd1.KB479743             C 0 I 4
s chrPic2.chrUn_KK088237v1       5677201 1 -  22294289 a
i chrPic2.chrUn_KK088237v1     C 0 I 4
s anoCar2.chr1                 148577454 1 + 263920458 t
i anoCar2.chr1                 C 0 I 4
s latCha1.JH128047                349062 1 -    600338 a
i latCha1.JH128047             C 0 I 4
s tetNig2.chr10                  6374852 1 +  13272281 t
i tetNig2.chr10                C 0 I 1384
s oreNil2.chrLG9                14879181 1 +  20956653 T
i oreNil2.chrLG9               C 0 N 0
s neoBri1.JH422308               3491819 1 -   5414369 T
i neoBri1.JH422308             C 0 n 0
s mayZeb1.JH720522                609344 1 -   6649201 T
i mayZeb1.JH720522             C 0 I 4
s oryLat2.chr22                 17713680 1 -  28810691 T
i oryLat2.chr22                I 4 C 0
s xipMac1.JH556722                319035 1 -   2306555 T
i xipMac1.JH556722             I 4 C 0
s gasAcu1.chrXV                  6158330 1 +  16198764 T
i gasAcu1.chrXV                C 0 I 2180
s danRer10.chr17                18108194 1 -  53345113 T
i danRer10.chr17               C 0 I 4
s astMex1.KB882259               1463560 1 -   1566646 T
i astMex1.KB882259             C 0 I 1823
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e xenTro7.KB021654              26443316 5 + 122929044 I
e ornAna1.chr4                  58039176 0 -  58987262 I
e punNye1.JH419232               4767720 338 +   5065651 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-106803.000000
s hg38.chr8_KI270814v1_alt         82716 16 +    141812 TAGTTCC----------AAGTGTG---AA
s ponAbe2.chr8                  59052249 16 + 153482349 TAGTTCC----------AAGTGTG---AA
i ponAbe2.chr8                 I 4 C 0
s nomLeu3.chr16                 48130552 16 + 100215132 TAGTTCC----------AAGTGTG---AA
i nomLeu3.chr16                I 4 C 0
s calJac3.chr14                 99338140 16 + 108792865 TGGTTCT----------ACGTGTG---AA
i calJac3.chr14                I 4 C 0
s saiBol1.JH378126              24004255 16 +  27210278 TGGTTCT----------AGGTGTG---AA
i saiBol1.JH378126             I 4 C 0
s otoGar3.GL873541              21185670 16 -  23169006 TCGTTCT----------ACATGTG---AA
i otoGar3.GL873541             I 4 C 0
s vicPac2.KB632437              19209003 19 -  22931326 TGGTTCT----------ACATGGGAAAGA
i vicPac2.KB632437             I 4 C 0
s camFer1.KB017763               2803394 19 -   6207710 TGGTTCT----------ACGTGGGAAAGA
i camFer1.KB017763             I 4 C 0
s orcOrc1.KB316907              10839131 19 +  17242564 TGGTTCT----------ACGTGTGGAAAA
i orcOrc1.KB316907             I 4 C 0
s equCab2.chr15                 84032904 19 +  91571448 TGGTTCT----------ACATGTGAAAAA
i equCab2.chr15                I 4 C 0
s cerSim1.JH767782               6806416 19 -  14545593 TGGTTCT----------ACATGCGAGAAA
i cerSim1.JH767782             I 4 C 0
s felCat8.chrA3                134104200 19 + 140925898 TGGTGCT----------GCAGGTGAAAAA
i felCat8.chrA3                I 4 C 0
s canFam3.chr17                 57837246 19 -  64289059 TGGTTCT----------ACAGGTGAAAAA
i canFam3.chr17                I 4 C 0
s musFur1.GL896914              13609178 18 -  19722643 TGGTTCT----------GCA-GCGGGAAA
i musFur1.GL896914             I 4 C 0
s odoRosDiv1.KB229025            3031028 19 +   4816872 TGGTTCT----------ACAGGTGAAAAA
i odoRosDiv1.KB229025          I 4 C 0
s pteAle1.KB030580              19409682 19 -  23789964 TGGTTCT----------GCAGGTGAAAAA
i pteAle1.KB030580             I 4 C 0
s loxAfr3.scaffold_20           27616595 19 -  46401353 TGGTTCT----------AAGTGTGAAAAG
i loxAfr3.scaffold_20          I 4 C 0
s triMan1.JH594629               9963951 19 +  24341844 TGGTTCT----------AAGTGTGAAAAG
i triMan1.JH594629             I 4 C 0
s dasNov3.JH567436               1030326 19 -   2788317 TGGTTCT----------AAGTGTGAAAAG
i dasNov3.JH567436             I 4 C 0
s monDom5.chr1                 530522771 18 + 748055161 TTGACCT----------A-TGGGGAAAAC
i monDom5.chr1                 I 4 C 0
s sarHar1.chr1_GL834688_random    516428 18 +   3395230 ttgtcct----------g-gGGGAAAAAT
i sarHar1.chr1_GL834688_random I 4 C 0
s macEug2.GL109592                 97133 17 -    117391 TTGTCCT------------AGGGAAAAAC
i macEug2.GL109592             I 4 C 0
s colLiv1.KB375528               5867186 14 -  25666195 TTGTACT----------ATAAGGC-----
i colLiv1.KB375528             I 4 C 0
s falChe1.KB397350               1707226 14 -   3649919 TTGTACT----------ATAAGGC-----
i falChe1.KB397350             I 4 C 0
s falPer1.KB390952               2753872 14 -  18327016 TTGTACT----------ATAAGGC-----
i falPer1.KB390952             I 4 C 0
s ficAlb2.chr2                 148476089 14 + 157563209 TTgtact----------gaaattt-----
i ficAlb2.chr2                 I 4 C 0
s taeGut2.chr3                  13879857 14 - 112617285 TCGTACT----------ATAAGGC-----
i taeGut2.chr3                 I 4 C 0
s pseHum1.KB221189              55280093 14 -  63311091 TTGTACT----------GAGATTT-----
i pseHum1.KB221189             I 4 C 0
s anaPla1.KB742696               1244521 14 -   1270250 TTGTACT----------ACAAGGC-----
i anaPla1.KB742696             I 4 C 0
s melGal1.chr3                  91311526 17 + 100405168 TTGTACT-------GAAACAAGTT-----
i melGal1.chr3                 I 4 C 0
s allMis1.JH731579                503420 14 -    636928 TTGTACT----------AAATGAG-----
i allMis1.JH731579             I 4 C 0
s cheMyd1.KB479743               1969212 14 +   4979691 TCGTACT----------ATGTGGG-----
i cheMyd1.KB479743             I 4 C 0
s chrPic2.chrUn_KK088237v1       5677206  8 -  22294289 ttGTGCT----------------G-----
i chrPic2.chrUn_KK088237v1     I 4 C 0
s anoCar2.chr1                 148577459 14 + 263920458 TTGTCCT----------GTGTGAA-----
i anoCar2.chr1                 I 4 n 4
s xenTro7.KB021654              26443321 19 + 122929044 TGGTCCT----------ACATCATGCaaa
i xenTro7.KB021654             I 5 C 0
s latCha1.JH128047                349067 17 -    600338 ttgtacT----------GTACAGAAAG--
i latCha1.JH128047             I 4 C 0
s mayZeb1.JH720522                609349  7 -   6649201 TTGTact----------------------
i mayZeb1.JH720522             I 4 I 5
s oryLat2.chr22                 17713681  7 -  28810691 TGGtgct----------------------
i oryLat2.chr22                C 0 I 2
s xipMac1.JH556722                319036  7 -   2306555 TGGTCCT----------------------
i xipMac1.JH556722             C 0 I 1539
s danRer10.chr17                18108199 14 -  53345113 TAGAGCTGTGTGAA---------------
i danRer10.chr17               I 4 C 0
s astMex1.KB882153               1887577  7 +   2696342 TAGTGCT----------------------
i astMex1.KB882153             n 1823 C 0
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e ornAna1.chr4                  58039176  0 -  58987262 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=19367.000000
s hg38.chr8_KI270814v1_alt         82732 1 +    141812 A
s ponAbe2.chr8                  59052265 1 + 153482349 A
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48130568 1 + 100215132 A
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99338156 1 + 108792865 A
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24004271 1 +  27210278 A
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21185686 1 -  23169006 A
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19209022 1 -  22931326 A
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2803413 1 -   6207710 A
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10839150 1 +  17242564 G
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84032923 1 +  91571448 A
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6806435 1 -  14545593 A
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134104219 1 + 140925898 A
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57837265 1 -  64289059 A
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13609196 1 -  19722643 A
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3031047 1 +   4816872 A
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19409701 1 -  23789964 A
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27616614 1 -  46401353 A
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9963970 1 +  24341844 A
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1030345 1 -   2788317 A
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530522789 1 + 748055161 A
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    516446 1 +   3395230 A
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL109592                 97150 1 -    117391 A
i macEug2.GL109592             C 0 C 0
s xenTro7.KB021654              26443340 1 + 122929044 t
i xenTro7.KB021654             C 0 C 0
s oryLat2.chr22                 17713690 1 -  28810691 a
i oryLat2.chr22                I 2 C 0
s danRer10.chr17                18108213 1 -  53345113 A
i danRer10.chr17               C 0 I 2164
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e ornAna1.chr4                  58039176 0 -  58987262 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609356 5 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e astMex1.KB882153               1887584 0 +   2696342 C
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e ficAlb2.chr2                 148476103 0 + 157563209 C
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221189              55280107 0 -  63311091 C
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867200 0 -  25666195 C
e allMis1.JH731579                503434 0 -    636928 C
e falPer1.KB390952               2753886 0 -  18327016 C
e falChe1.KB397350               1707240 0 -   3649919 C
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr3                  91311543 0 + 100405168 C
e anaPla1.KB742696               1244535 0 -   1270250 C
e latCha1.JH128047                349084 0 -    600338 C
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1969226 0 +   4979691 C
e chrPic2.chrUn_KK088237v1       5677214 0 -  22294289 C
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr3                  13879871 0 - 112617285 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=15123.000000
s hg38.chr8_KI270814v1_alt         82733 1 +    141812 G
s ponAbe2.chr8                  59052266 1 + 153482349 G
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48130569 1 + 100215132 G
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99338157 1 + 108792865 G
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24004272 1 +  27210278 G
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21185687 1 -  23169006 G
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19209023 1 -  22931326 G
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2803414 1 -   6207710 G
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10839151 1 +  17242564 G
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84032924 1 +  91571448 G
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6806436 1 -  14545593 G
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134104220 1 + 140925898 G
i felCat8.chrA3                C 0 C 0
s musFur1.GL896914              13609197 1 -  19722643 G
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3031048 1 +   4816872 G
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19409702 1 -  23789964 A
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27616615 1 -  46401353 G
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9963971 1 +  24341844 G
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1030346 1 -   2788317 G
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530522790 1 + 748055161 G
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    516447 1 +   3395230 C
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL109592                 97151 1 -    117391 G
i macEug2.GL109592             C 0 C 0
s xenTro7.KB021654              26443341 1 + 122929044 a
i xenTro7.KB021654             C 0 C 0
s astMex1.KB882153               1887584 1 +   2696342 G
i astMex1.KB882153             C 0 C 0
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e danRer10.chr17                18108214 2164 -  53345113 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e canFam3.chr17                 57837266 0 -  64289059 C
e ornAna1.chr4                  58039176 0 -  58987262 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609356 5 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e oryLat2.chr22                 17713691 0 -  28810691 C
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e ficAlb2.chr2                 148476103 0 + 157563209 C
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221189              55280107 0 -  63311091 C
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867200 0 -  25666195 C
e allMis1.JH731579                503434 0 -    636928 C
e falPer1.KB390952               2753886 0 -  18327016 C
e falChe1.KB397350               1707240 0 -   3649919 C
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr3                  91311543 0 + 100405168 C
e anaPla1.KB742696               1244535 0 -   1270250 C
e latCha1.JH128047                349084 0 -    600338 C
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1969226 0 +   4979691 C
e chrPic2.chrUn_KK088237v1       5677214 0 -  22294289 C
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr3                  13879871 0 - 112617285 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=17243.000000
s hg38.chr8_KI270814v1_alt         82734  5 +    141812 CA------A----GG
s ponAbe2.chr8                  59052267  5 + 153482349 CA------A----GG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48130570  5 + 100215132 CA------A----GG
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99338158  5 + 108792865 GA------A----GG
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24004273  5 +  27210278 CA------A----AG
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21185688 11 -  23169006 AAGAAAGGA----GG
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19209024  5 -  22931326 CA------A----GA
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2803415  5 -   6207710 CA------A----GA
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10839152  5 +  17242564 TG------A----GA
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84032925  5 +  91571448 CA------A----GG
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6806437  5 -  14545593 CA------A----GG
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134104221  5 + 140925898 CA------A----GG
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57837266  5 -  64289059 CA------A----GG
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13609198  5 -  19722643 CA------A----GG
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3031049  5 +   4816872 CA------A----GG
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19409703  5 -  23789964 GC------A----AG
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27616616  5 -  46401353 CC------A----GG
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9963972  5 +  24341844 CA------A----GA
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1030347  5 -   2788317 CA------A----AG
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530522791  5 + 748055161 CA------G----CA
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    516448  5 +   3395230 CA------G----CA
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL109592                 97152  5 -    117391 CA------G----CA
i macEug2.GL109592             C 0 C 0
s colLiv1.KB375528               5867200  5 -  25666195 AA------A----GA
i colLiv1.KB375528             C 0 C 0
s falChe1.KB397350               1707240  5 -   3649919 AA------A----GA
i falChe1.KB397350             C 0 C 0
s falPer1.KB390952               2753886  5 -  18327016 AA------A----GA
i falPer1.KB390952             C 0 C 0
s ficAlb2.chr2                 148476103  9 + 157563209 ta------attggaa
i ficAlb2.chr2                 C 0 C 0
s taeGut2.chr3                  13879871  7 - 112617285 AA------A--AAGA
i taeGut2.chr3                 C 0 C 0
s pseHum1.KB221189              55280107  9 -  63311091 TA------ATTAGGA
i pseHum1.KB221189             C 0 C 0
s anaPla1.KB742696               1244535  5 -   1270250 AA------A----GA
i anaPla1.KB742696             C 0 C 0
s melGal1.chr3                  91311543  3 + 100405168 --------A----GA
i melGal1.chr3                 C 0 C 0
s allMis1.JH731579                503434  5 -    636928 AA------A----GA
i allMis1.JH731579             C 0 C 0
s cheMyd1.KB479743               1969226  5 +   4979691 AA------A----GA
i cheMyd1.KB479743             C 0 C 0
s chrPic2.chrUn_KK088237v1       5677214  5 -  22294289 CA------A----TT
i chrPic2.chrUn_KK088237v1     C 0 C 0
s xenTro7.KB021654              26443342  5 + 122929044 ca------t----aa
i xenTro7.KB021654             C 0 C 0
s latCha1.JH128047                349084  5 -    600338 AA------A----TG
i latCha1.JH128047             C 0 C 0
s mayZeb1.JH720522                609361  4 -   6649201 -a------a----aa
i mayZeb1.JH720522             I 5 I 9
s oryLat2.chr22                 17713691  4 -  28810691 -a------a----aa
i oryLat2.chr22                C 0 I 1652
s astMex1.KB882153               1887585  5 +   2696342 CA------G----AA
i astMex1.KB882153             C 0 C 0
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e danRer10.chr17                18108214 2164 -  53345113 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e ornAna1.chr4                  58039176  0 -  58987262 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=6349.000000
s hg38.chr8_KI270814v1_alt         82739 5 +    141812 -ATAAA
s ponAbe2.chr8                  59052272 5 + 153482349 -ATAAA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48130575 5 + 100215132 -ATAAA
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99338163 5 + 108792865 -ATCAA
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24004278 5 +  27210278 -ATAAA
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21185699 5 -  23169006 -ATATG
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19209029 5 -  22931326 -AGACC
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2803420 5 -   6207710 -AGACC
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10839157 5 +  17242564 -CTCAA
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84032930 5 +  91571448 -GTAAA
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6806442 5 -  14545593 -ATAAA
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134104226 5 + 140925898 -ATAAT
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57837271 5 -  64289059 -ATAAT
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13609203 5 -  19722643 -ATGAG
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3031054 5 +   4816872 -ATAAT
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19409708 5 -  23789964 -ATCAA
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27616621 5 -  46401353 -ACACA
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9963977 5 +  24341844 -ACACA
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1030352 5 -   2788317 -ATAAA
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530522796 5 + 748055161 -ATAAA
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    516453 5 +   3395230 -ATAAA
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL109592                 97157 5 -    117391 -ATAAA
i macEug2.GL109592             C 0 C 0
s colLiv1.KB375528               5867205 5 -  25666195 -ATCAG
i colLiv1.KB375528             C 0 C 0
s falChe1.KB397350               1707245 5 -   3649919 -ATCAG
i falChe1.KB397350             C 0 C 0
s falPer1.KB390952               2753891 5 -  18327016 -ATCAG
i falPer1.KB390952             C 0 C 0
s ficAlb2.chr2                 148476112 5 + 157563209 -aacat
i ficAlb2.chr2                 C 0 C 0
s taeGut2.chr3                  13879878 5 - 112617285 -ATCAG
i taeGut2.chr3                 C 0 C 0
s pseHum1.KB221189              55280116 5 -  63311091 -AACAT
i pseHum1.KB221189             C 0 C 0
s anaPla1.KB742696               1244540 5 -   1270250 -ATCAA
i anaPla1.KB742696             C 0 I 9705
s melGal1.chr3                  91311546 5 + 100405168 -ACAGA
i melGal1.chr3                 C 0 I 1
s allMis1.JH731579                503439 5 -    636928 -AACAA
i allMis1.JH731579             C 0 I 2
s cheMyd1.KB479743               1969231 5 +   4979691 -AAAGC
i cheMyd1.KB479743             C 0 I 4
s chrPic2.chrUn_KK088237v1       5677219 5 -  22294289 -ATAGT
i chrPic2.chrUn_KK088237v1     C 0 I 2
s xenTro7.KB021654              26443347 5 + 122929044 -ataaa
i xenTro7.KB021654             C 0 C 0
s latCha1.JH128047                349089 5 -    600338 -GTTTA
i latCha1.JH128047             C 0 C 0
s mayZeb1.JH720522                609374 5 -   6649201 aCTAA-
i mayZeb1.JH720522             I 9 C 0
s astMex1.KB882153               1887590 4 +   2696342 -ATAC-
i astMex1.KB882153             C 0 C 0
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e danRer10.chr17                18108214 2164 -  53345113 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e ornAna1.chr4                  58039176 0 -  58987262 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e oryLat2.chr22                 17713695 1652 -  28810691 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=57393.000000
s hg38.chr8_KI270814v1_alt         82744 3 +    141812 TCA
s ponAbe2.chr8                  59052277 3 + 153482349 TCA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48130580 3 + 100215132 TCA
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99338168 3 + 108792865 TCA
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24004283 3 +  27210278 TCA
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21185704 3 -  23169006 TCA
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19209034 3 -  22931326 TCA
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2803425 3 -   6207710 TCA
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10839162 3 +  17242564 TCA
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84032935 3 +  91571448 TCG
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6806447 3 -  14545593 TCG
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134104231 3 + 140925898 TTG
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57837276 3 -  64289059 TTG
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13609208 3 -  19722643 CGG
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3031059 3 +   4816872 TTG
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19409713 3 -  23789964 ATC
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27616626 3 -  46401353 TCA
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9963982 3 +  24341844 TCA
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1030357 3 -   2788317 TCA
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530522801 3 + 748055161 TCA
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    516458 3 +   3395230 TCA
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL109592                 97162 3 -    117391 TCA
i macEug2.GL109592             C 0 C 0
s colLiv1.KB375528               5867210 3 -  25666195 TCA
i colLiv1.KB375528             C 0 C 0
s falChe1.KB397350               1707250 3 -   3649919 TCA
i falChe1.KB397350             C 0 C 0
s falPer1.KB390952               2753896 3 -  18327016 TCA
i falPer1.KB390952             C 0 C 0
s ficAlb2.chr2                 148476117 3 + 157563209 ttc
i ficAlb2.chr2                 C 0 C 0
s taeGut2.chr3                  13879883 3 - 112617285 TCA
i taeGut2.chr3                 C 0 C 0
s pseHum1.KB221189              55280121 3 -  63311091 TTT
i pseHum1.KB221189             C 0 C 0
s melGal1.chr3                  91311552 3 + 100405168 TTT
i melGal1.chr3                 I 1 C 0
s allMis1.JH731579                503446 3 -    636928 TCA
i allMis1.JH731579             I 2 C 0
s cheMyd1.KB479743               1969240 3 +   4979691 TCA
i cheMyd1.KB479743             I 4 C 0
s chrPic2.chrUn_KK088237v1       5677226 1 -  22294289 --A
i chrPic2.chrUn_KK088237v1     I 2 C 0
s xenTro7.KB021654              26443352 3 + 122929044 taa
i xenTro7.KB021654             C 0 C 0
s latCha1.JH128047                349094 2 -    600338 -TG
i latCha1.JH128047             C 0 C 0
s mayZeb1.JH720522                609379 3 -   6649201 TCA
i mayZeb1.JH720522             C 0 n 0
s astMex1.KB882153               1887594 3 +   2696342 ACA
i astMex1.KB882153             C 0 I 1
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e danRer10.chr17                18108214 2164 -  53345113 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e ornAna1.chr4                  58039176 0 -  58987262 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e oryLat2.chr22                 17713695 1652 -  28810691 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e anaPla1.KB742696               1244545 9705 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=46102.000000
s hg38.chr8_KI270814v1_alt         82747 1 +    141812 A
s ponAbe2.chr8                  59052280 1 + 153482349 A
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48130583 1 + 100215132 A
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99338171 1 + 108792865 A
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24004286 1 +  27210278 A
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21185707 1 -  23169006 G
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19209037 1 -  22931326 A
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2803428 1 -   6207710 A
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10839165 1 +  17242564 A
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84032938 1 +  91571448 A
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6806450 1 -  14545593 A
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134104234 1 + 140925898 A
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57837279 1 -  64289059 A
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13609211 1 -  19722643 A
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3031062 1 +   4816872 A
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19409716 1 -  23789964 A
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27616629 1 -  46401353 A
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9963985 1 +  24341844 A
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1030360 1 -   2788317 A
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530522804 1 + 748055161 A
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    516461 1 +   3395230 A
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL109592                 97165 1 -    117391 A
i macEug2.GL109592             C 0 C 0
s colLiv1.KB375528               5867213 1 -  25666195 A
i colLiv1.KB375528             C 0 n 0
s falChe1.KB397350               1707253 1 -   3649919 A
i falChe1.KB397350             C 0 I 6
s falPer1.KB390952               2753899 1 -  18327016 A
i falPer1.KB390952             C 0 I 6
s ficAlb2.chr2                 148476120 1 + 157563209 a
i ficAlb2.chr2                 C 0 C 0
s taeGut2.chr3                  13879886 1 - 112617285 A
i taeGut2.chr3                 C 0 I 6
s pseHum1.KB221189              55280124 1 -  63311091 A
i pseHum1.KB221189             C 0 C 0
s melGal1.chr3                  91311555 1 + 100405168 A
i melGal1.chr3                 C 0 I 20
s allMis1.JH731579                503449 1 -    636928 A
i allMis1.JH731579             C 0 n 0
s cheMyd1.KB479743               1969243 1 +   4979691 A
i cheMyd1.KB479743             C 0 I 11
s chrPic2.chrUn_KK088237v1       5677227 1 -  22294289 A
i chrPic2.chrUn_KK088237v1     C 0 I 11
s xenTro7.KB021654              26443355 1 + 122929044 a
i xenTro7.KB021654             C 0 I 1656
s latCha1.JH128047                349096 1 -    600338 G
i latCha1.JH128047             C 0 I 1
s astMex1.KB882153               1887598 1 +   2696342 A
i astMex1.KB882153             I 1 C 0
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e danRer10.chr17                18108214 2164 -  53345113 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e ornAna1.chr4                  58039176 0 -  58987262 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e oryLat2.chr22                 17713695 1652 -  28810691 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e anaPla1.KB742696               1244545 9705 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-336260.000000
s hg38.chr8_KI270814v1_alt         82748 19 +    141812 GATGCCTCTT-GG-------CATGAAA-----------
s ponAbe2.chr8                  59052281 19 + 153482349 GATGCCTCTT-GG-------CATGAAA-----------
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48130584 19 + 100215132 GATGCCTCTT-GG-------CATGAAA-----------
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99338172 19 + 108792865 GATGCCTCCT-GG-------CATGGAA-----------
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24004287 19 +  27210278 GATGCCTTCT-GG-------CACAGAA-----------
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21185708 22 -  23169006 GATGCCTCTT-TGGCT----CACTACC-----------
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19209038  7 -  22931326 GACACCT-------------------------------
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2803429  7 -   6207710 GACACCT-------------------------------
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10839166  7 +  17242564 GACACCT-------------------------------
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84032939 18 +  91571448 GATGCCTC-C-GG-------CACGGCG-----------
i equCab2.chr15                C 0 I 2
s cerSim1.JH767782               6806451 18 -  14545593 CATGCCTG-C-AG-------CACGGCG-----------
i cerSim1.JH767782             C 0 I 2
s felCat8.chrA3                134104235 19 + 140925898 GATGCCACCT-GG-------CACGGCA-----------
i felCat8.chrA3                C 0 I 7
s canFam3.chr17                 57837280 19 -  64289059 GATGCCTCTT-AG-------CACAGCA-----------
i canFam3.chr17                C 0 I 2
s musFur1.GL896914              13609212 18 -  19722643 GATGCCTC-A-GG-------CACGGCA-----------
i musFur1.GL896914             C 0 I 2
s odoRosDiv1.KB229025            3031063 17 +   4816872 GATGCCTC---GG-------CACGGCA-----------
i odoRosDiv1.KB229025          C 0 I 2
s pteAle1.KB030580              19409717 18 -  23789964 GATGCCTCTC-GG-------CAT-GTG-----------
i pteAle1.KB030580             C 0 I 2
s loxAfr3.scaffold_20           27616630 19 -  46401353 GATGCCTTGT-GG-------CGGAGTA-----------
i loxAfr3.scaffold_20          C 0 I 1
s triMan1.JH594629               9963986 19 +  24341844 GATGCCTCGT-GG-------CAGAGCC-----------
i triMan1.JH594629             C 0 I 2
s dasNov3.JH567436               1030361 20 -   2788317 GATGCCTCTTGGG-------TAGAGTA-----------
i dasNov3.JH567436             C 0 I 2
s monDom5.chr1                 530522805 19 + 748055161 GTTGCCTATT-GA-------CCTAAGG-----------
i monDom5.chr1                 C 0 I 2
s sarHar1.chr1_GL834688_random    516462 19 +   3395230 GTTGCCTATT-GA-------CCTAAAG-----------
i sarHar1.chr1_GL834688_random C 0 I 2
s macEug2.GL109592                 97166 19 -    117391 GTTGCCTATT-GA-------CCTAAGG-----------
i macEug2.GL109592             C 0 I 2
s falChe1.KB397350               1707260  4 -   3649919 GAGA----------------------------------
i falChe1.KB397350             I 6 C 0
s falPer1.KB390952               2753906  4 -  18327016 GAGA----------------------------------
i falPer1.KB390952             I 6 C 0
s ficAlb2.chr2                 148476121  4 + 157563209 gaga----------------------------------
i ficAlb2.chr2                 C 0 I 18
s taeGut2.chr3                  13879893  4 - 112617285 GAGA----------------------------------
i taeGut2.chr3                 I 6 I 26
s pseHum1.KB221189              55280125  4 -  63311091 GAGA----------------------------------
i pseHum1.KB221189             C 0 I 197
s melGal1.chr3                  91311576  2 + 100405168 Ga------------------------------------
i melGal1.chr3                 I 20 I 3
s cheMyd1.KB479743               1969255  4 +   4979691 GGAC----------------------------------
i cheMyd1.KB479743             I 11 C 0
s chrPic2.chrUn_KK088237v1       5677239  4 -  22294289 GAAA----------------------------------
i chrPic2.chrUn_KK088237v1     I 11 C 0
s latCha1.JH128047                349098 13 -    600338 --------------TTTTACTACTGAA-----------
i latCha1.JH128047             I 1 I 12
s astMex1.KB882153               1887599 17 +   2696342 ---------------------ACAGCCCTTCAGAACCA
i astMex1.KB882153             C 0 C 0
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e danRer10.chr17                18108214 2164 -  53345113 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e xenTro7.KB021654              26443356 1656 + 122929044 I
e ornAna1.chr4                  58039176  0 -  58987262 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e oryLat2.chr22                 17713695 1652 -  28810691 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH731579                503450  0 -    636928 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e anaPla1.KB742696               1244545 9705 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-47437.000000
s hg38.chr8_KI270814v1_alt         82767 4 +    141812 CTTT
s ponAbe2.chr8                  59052300 4 + 153482349 CTCT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48130603 4 + 100215132 CTCT
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99338191 4 + 108792865 ATCA
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24004306 4 +  27210278 ATCA
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21185730 4 -  23169006 CCGA
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19209045 4 -  22931326 CCGG
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2803436 4 -   6207710 CCGG
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10839173 4 +  17242564 CCAG
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84032959 4 +  91571448 CCAC
i equCab2.chr15                I 2 C 0
s cerSim1.JH767782               6806471 4 -  14545593 CCAG
i cerSim1.JH767782             I 2 C 0
s felCat8.chrA3                134104261 4 + 140925898 CCAG
i felCat8.chrA3                I 7 C 0
s canFam3.chr17                 57837301 4 -  64289059 CTGC
i canFam3.chr17                I 2 C 0
s musFur1.GL896914              13609232 4 -  19722643 CCAG
i musFur1.GL896914             I 2 C 0
s odoRosDiv1.KB229025            3031082 4 +   4816872 CCAG
i odoRosDiv1.KB229025          I 2 C 0
s pteAle1.KB030580              19409737 4 -  23789964 CGAG
i pteAle1.KB030580             I 2 C 0
s loxAfr3.scaffold_20           27616650 4 -  46401353 CCAG
i loxAfr3.scaffold_20          I 1 C 0
s triMan1.JH594629               9964007 4 +  24341844 CCAG
i triMan1.JH594629             I 2 C 0
s dasNov3.JH567436               1030383 4 -   2788317 CCAG
i dasNov3.JH567436             I 2 C 0
s monDom5.chr1                 530522826 4 + 748055161 TCTG
i monDom5.chr1                 I 2 C 0
s sarHar1.chr1_GL834688_random    516483 4 +   3395230 TCAG
i sarHar1.chr1_GL834688_random I 2 C 0
s macEug2.GL109592                 97187 4 -    117391 TCAC
i macEug2.GL109592             I 2 C 0
s ficAlb2.chr2                 148476143 1 + 157563209 T---
i ficAlb2.chr2                 I 18 I 1
s melGal1.chr3                  91311581 1 + 100405168 t---
i melGal1.chr3                 I 3 I 1943
s cheMyd1.KB479743               1969259 1 +   4979691 C---
i cheMyd1.KB479743             C 0 C 0
s chrPic2.chrUn_KK088237v1       5677243 1 -  22294289 C---
i chrPic2.chrUn_KK088237v1     C 0 I 2
s latCha1.JH128047                349123 2 -    600338 CT--
i latCha1.JH128047             I 12 C 0
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e danRer10.chr17                18108214 2164 -  53345113 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e xenTro7.KB021654              26443356 1656 + 122929044 I
e ornAna1.chr4                  58039176 0 -  58987262 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e astMex1.KB882153               1887616 0 +   2696342 C
e oryLat2.chr22                 17713695 1652 -  28810691 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221189              55280129 197 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH731579                503450 0 -    636928 I
e falPer1.KB390952               2753910 0 -  18327016 C
e falChe1.KB397350               1707264 0 -   3649919 C
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e anaPla1.KB742696               1244545 9705 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr3                  13879897 26 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-91805.000000
s hg38.chr8_KI270814v1_alt         82771 17 +    141812 ACTGGACA--ACCT----------TGAAG
s ponAbe2.chr8                  59052304 17 + 153482349 ACTGGACA--GGCT----------TGAAG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48130607  7 + 100215132 ACTGG----------------------AG
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99338195 17 + 108792865 AAGGGACA--GCCT----------TGAAG
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24004310 17 +  27210278 AAGGGACA--GCCT----------TGAAG
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21185734 17 -  23169006 ATAGGACG--GCCT----------CCAGG
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19209049 17 -  22931326 ACAGCACG--GTCT----------CGCCG
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2803440 17 -   6207710 ACAGCACG--GCCT----------CGCCG
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10839177 19 +  17242564 ACTGGAGAGCGCCC----------CGCTG
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84032963 17 +  91571448 ACTGGACA--GCCT----------TGCAG
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6806475 17 -  14545593 ACTACACA--GCCT----------TGCAG
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134104265 17 + 140925898 ACCAGACG--GGCC----------TGCGG
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57837305 17 -  64289059 ACTGGACA--GGCT----------TGCCG
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13609236 16 -  19722643 ACTACACA--GGC-----------TGCAG
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3031086 17 +   4816872 ACAAGACA--GGCT----------TGCAG
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19409741 17 -  23789964 ACCGGGTG--ACCG----------GGCAG
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27616654 17 -  46401353 GCTGGATG--GCTT----------AGAGG
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9964011 17 +  24341844 ACTGGATG--GCGG----------AGAAG
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1030387 17 -   2788317 ATTGGACA--ATTT----------AGAAG
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530522830 23 + 748055161 A----GCA--GCCCCCTGCAGCACCCCAT
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    516487  8 +   3395230 A----GCA--GCCT---------------
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL109592                 97191 16 -    117391 A----GCA--GCCTCCT-------TACAG
i macEug2.GL109592             C 0 C 0
s falChe1.KB397350               1707264  9 -   3649919 ----------aatc----------cacag
i falChe1.KB397350             C 0 I 17
s falPer1.KB390952               2753910  9 -  18327016 ----------aatc----------cacag
i falPer1.KB390952             C 0 I 17
s ficAlb2.chr2                 148476145  9 + 157563209 ----------ATTT----------AGCAA
i ficAlb2.chr2                 I 1 I 152
s melGal1.chr22                 13571570  8 -  14786829 -----------GTT----------GGAGG
i melGal1.chr22                n 1943 I 13
s cheMyd1.KB479743               1969260  7 +   4979691 ------------CT----------TGCAG
i cheMyd1.KB479743             C 0 C 0
s chrPic2.chrUn_KK088237v1       5677246  9 -  22294289 ----------ATTT----------CACAG
i chrPic2.chrUn_KK088237v1     I 2 C 0
s latCha1.JH128047                349125 17 -    600338 ACTAACTA--GGCA----------AGAAG
i latCha1.JH128047             C 0 C 0
s astMex1.KB882153               1887616 12 +   2696342 -----ACA--CACT----------CAAAC
i astMex1.KB882153             C 0 C 0
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e danRer10.chr17                18108214 2164 -  53345113 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e xenTro7.KB021654              26443356 1656 + 122929044 I
e ornAna1.chr4                  58039176  0 -  58987262 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e oryLat2.chr22                 17713695 1652 -  28810691 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280129 197 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH731579                503450  0 -    636928 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e anaPla1.KB742696               1244545 9705 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr3                  13879897 26 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-141218.000000
s hg38.chr8_KI270814v1_alt         82788 10 +    141812 TCATGC----CAGT----
s ponAbe2.chr8                  59052321 10 + 153482349 TCATGC----CAGT----
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48130614 10 + 100215132 TCATGC----CAGT----
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99338212 10 + 108792865 CCACCC----CAGT----
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24004327 10 +  27210278 CCACCC----CAGT----
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21185751  9 -  23169006 GC-CCC----CAAT----
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19209066 10 -  22931326 TGATCC----CAGC----
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2803457 10 -   6207710 TGATCC----CAGC----
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10839196 10 +  17242564 TGATCC----CGAC----
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84032980 10 +  91571448 GGATCC----CATA----
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6806492 10 -  14545593 GGATCC----TACG----
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134104282  9 + 140925898 GGAT-C----CATT----
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57837322 10 -  64289059 GGATGC----CATT----
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13609252 10 -  19722643 GGATCC----CGCT----
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3031103 10 +   4816872 GGATCC----CGTT----
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19409758 10 -  23789964 TGGTCT----TGTC----
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27616671 10 -  46401353 CCAGGC----TATG----
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9964028 10 +  24341844 CCACGC----TACT----
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1030404 10 -   2788317 TCATCC----TATT----
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530522853 14 + 748055161 TCTCTCCCTTCACT----
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    516495 12 +   3395230 --CCCCTAGTTAGT----
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL109592                 97207 14 -    117391 GCCCCCTGTTTACT----
i macEug2.GL109592             C 0 C 0
s falChe1.KB397350               1707290  5 -   3649919 ---------TTATT----
i falChe1.KB397350             I 17 I 1
s falPer1.KB390952               2753936  5 -  18327016 ---------TTATT----
i falPer1.KB390952             I 17 I 1
s taeGut2.chr3                  13879923  5 - 112617285 ---------TCGTT----
i taeGut2.chr3                 I 26 I 1
s melGal1.chr22                 13571591  5 -  14786829 ---------GCCCC----
i melGal1.chr22                I 13 I 3
s cheMyd1.KB479743               1969267  5 +   4979691 ---------TCCTG----
i cheMyd1.KB479743             C 0 I 647
s chrPic2.chrUn_KK088237v1       5677255  5 -  22294289 ---------TCATG----
i chrPic2.chrUn_KK088237v1     C 0 I 6
s latCha1.JH128047                349142  5 -    600338 ---------TCATG----
i latCha1.JH128047             C 0 I 4
s astMex1.KB882153               1887628 11 +   2696342 -------TCACACTtaat
i astMex1.KB882153             C 0 C 0
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e danRer10.chr17                18108214 2164 -  53345113 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e xenTro7.KB021654              26443356 1656 + 122929044 I
e ornAna1.chr4                  58039176  0 -  58987262 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e oryLat2.chr22                 17713695 1652 -  28810691 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e ficAlb2.chr2                 148476154 152 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280129 197 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH731579                503450  0 -    636928 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e anaPla1.KB742696               1244545 9705 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=79279.000000
s hg38.chr8_KI270814v1_alt         82798 5 +    141812 ACCCA
s ponAbe2.chr8                  59052331 5 + 153482349 ACCCA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48130624 5 + 100215132 ACCCA
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99338222 5 + 108792865 ACCCA
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24004337 5 +  27210278 ACCCA
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21185760 5 -  23169006 TCCCA
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19209076 5 -  22931326 CCCCG
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2803467 5 -   6207710 CTCCG
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10839206 5 +  17242564 ACCCA
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84032990 5 +  91571448 ACCCA
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6806502 5 -  14545593 ACCCA
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134104291 5 + 140925898 ACCCA
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57837332 5 -  64289059 ACCCA
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13609262 5 -  19722643 GCCTG
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3031113 5 +   4816872 ACCCA
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19409768 5 -  23789964 ATCCA
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27616681 5 -  46401353 CCCCA
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9964038 5 +  24341844 GCCCA
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1030414 5 -   2788317 CTCCA
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530522867 5 + 748055161 ACACA
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    516507 5 +   3395230 ACACA
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL109592                 97221 5 -    117391 ACACA
i macEug2.GL109592             C 0 C 0
s falChe1.KB397350               1707296 5 -   3649919 ACAAA
i falChe1.KB397350             I 1 C 0
s falPer1.KB390952               2753942 5 -  18327016 ACAAA
i falPer1.KB390952             I 1 C 0
s taeGut2.chr3                  13879929 5 - 112617285 ACAAA
i taeGut2.chr3                 I 1 C 0
s melGal1.chr22                 13571599 5 -  14786829 ACCCA
i melGal1.chr22                I 3 C 0
s chrPic2.chrUn_KK088237v1       5677266 5 -  22294289 ACTAC
i chrPic2.chrUn_KK088237v1     I 6 C 0
s latCha1.JH128047                349151 5 -    600338 ACCCA
i latCha1.JH128047             I 4 N 0
s astMex1.KB882153               1887639 5 +   2696342 acaca
i astMex1.KB882153             C 0 C 0
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e danRer10.chr17                18108214 2164 -  53345113 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e xenTro7.KB021654              26443356 1656 + 122929044 I
e ornAna1.chr4                  58039176 0 -  58987262 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e oryLat2.chr22                 17713695 1652 -  28810691 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e ficAlb2.chr2                 148476154 152 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221189              55280129 197 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH731579                503450 0 -    636928 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e anaPla1.KB742696               1244545 9705 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1969272 647 +   4979691 I
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=72855.000000
s hg38.chr8_KI270814v1_alt         82803 9 +    141812 GTCTGCTGA
s ponAbe2.chr8                  59052336 9 + 153482349 GTCTGCTGA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48130629 9 + 100215132 GTCTGCTGA
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99338227 9 + 108792865 GCCTGCTGA
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24004342 9 +  27210278 GCCTGTTCA
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21185765 9 -  23169006 GCCTGCTGA
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19209081 7 -  22931326 GCCTG--GA
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2803472 7 -   6207710 GCCTG--GA
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10839211 7 +  17242564 CCCTG--GA
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84032995 8 +  91571448 GCCTGC-AA
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6806507 8 -  14545593 GCCCGC-GA
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134104296 8 + 140925898 GCCTGC-GA
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57837337 8 -  64289059 GCCTGC-AA
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13609267 8 -  19722643 GCCTGC-AA
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3031118 8 +   4816872 GCCTGC-AA
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19409773 8 -  23789964 GCCTGC-GA
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27616686 9 -  46401353 TCCTGCTGA
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9964043 9 +  24341844 CCCTGCTGA
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1030419 9 -   2788317 CCCTGCTGA
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530522872 9 + 748055161 GTCTGCAGA
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    516512 9 +   3395230 GCTTGCAGA
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL109592                 97226 9 -    117391 ACCTGCAGA
i macEug2.GL109592             C 0 C 0
s falChe1.KB397350               1707301 9 -   3649919 GTCTACTGA
i falChe1.KB397350             C 0 n 0
s falPer1.KB390952               2753947 9 -  18327016 GTCTACTGA
i falPer1.KB390952             C 0 n 0
s taeGut2.chr3                  13879934 9 - 112617285 GTCTACTGA
i taeGut2.chr3                 C 0 I 9148
s melGal1.chr22                 13571604 9 -  14786829 GGTTTCAGA
i melGal1.chr22                C 0 I 15
s chrPic2.chrUn_KK088237v1       5677271 9 -  22294289 TTTTACTAA
i chrPic2.chrUn_KK088237v1     C 0 C 0
s astMex1.KB882153               1887644 9 +   2696342 gtatataca
i astMex1.KB882153             C 0 C 0
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e danRer10.chr17                18108214 2164 -  53345113 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e xenTro7.KB021654              26443356 1656 + 122929044 I
e ornAna1.chr4                  58039176 0 -  58987262 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e oryLat2.chr22                 17713695 1652 -  28810691 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e ficAlb2.chr2                 148476154 152 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221189              55280129 197 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH731579                503450 0 -    636928 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e anaPla1.KB742696               1244545 9705 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1969272 647 +   4979691 I
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=30573.000000
s hg38.chr8_KI270814v1_alt         82812 2 +    141812 GA
s ponAbe2.chr8                  59052345 2 + 153482349 GA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48130638 2 + 100215132 GA
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99338236 2 + 108792865 GA
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24004351 2 +  27210278 GA
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21185774 2 -  23169006 GA
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19209088 2 -  22931326 GA
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2803479 2 -   6207710 GA
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10839218 2 +  17242564 CA
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84033003 2 +  91571448 GG
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6806515 2 -  14545593 GA
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134104304 2 + 140925898 GA
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57837345 2 -  64289059 CA
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13609275 2 -  19722643 CA
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3031126 2 +   4816872 CA
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19409781 2 -  23789964 GA
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27616695 2 -  46401353 GA
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9964052 2 +  24341844 GA
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1030428 2 -   2788317 GA
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530522881 2 + 748055161 GA
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    516521 2 +   3395230 GA
i sarHar1.chr1_GL834688_random C 0 I 5985
s macEug2.GL109592                 97235 2 -    117391 GA
i macEug2.GL109592             C 0 C 0
s melGal1.chr22                 13571628 2 -  14786829 AA
i melGal1.chr22                I 15 C 0
s chrPic2.chrUn_KK088237v1       5677280 2 -  22294289 AA
i chrPic2.chrUn_KK088237v1     C 0 C 0
s astMex1.KB882153               1887653 2 +   2696342 ga
i astMex1.KB882153             C 0 C 0
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e danRer10.chr17                18108214 2164 -  53345113 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e xenTro7.KB021654              26443356 1656 + 122929044 I
e ornAna1.chr4                  58039176 0 -  58987262 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e oryLat2.chr22                 17713695 1652 -  28810691 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e ficAlb2.chr2                 148476154 152 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221189              55280129 197 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH731579                503450 0 -    636928 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e anaPla1.KB742696               1244545 9705 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1969272 647 +   4979691 I
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr3                  13879943 9148 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=20412.000000
s hg38.chr8_KI270814v1_alt         82814 3 +    141812 -CCA
s ponAbe2.chr8                  59052347 3 + 153482349 -CCA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48130640 3 + 100215132 -TCA
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99338238 3 + 108792865 -CCA
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24004353 3 +  27210278 -CCA
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21185776 3 -  23169006 -CCG
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19209090 3 -  22931326 -CAA
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2803481 3 -   6207710 -CAA
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10839220 3 +  17242564 -CAA
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84033005 3 +  91571448 -CAA
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6806517 3 -  14545593 -CCA
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134104306 3 + 140925898 -CAA
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57837347 3 -  64289059 -CAA
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13609277 3 -  19722643 -CAA
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3031128 3 +   4816872 -CAA
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19409783 3 -  23789964 -CAA
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27616697 3 -  46401353 -CAA
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9964054 3 +  24341844 -CAA
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1030430 3 -   2788317 -CAA
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530522883 3 + 748055161 -CCA
i monDom5.chr1                 C 0 I 8299
s macEug2.GL109592                 97237 3 -    117391 -CCA
i macEug2.GL109592             C 0 C 0
s melGal1.chr22                 13571630 3 -  14786829 -CTT
i melGal1.chr22                C 0 C 0
s chrPic2.chrUn_KK088237v1       5677282 3 -  22294289 -CAT
i chrPic2.chrUn_KK088237v1     C 0 C 0
s astMex1.KB882153               1887655 2 +   2696342 tC--
i astMex1.KB882153             C 0 C 0
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e danRer10.chr17                18108214 2164 -  53345113 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e xenTro7.KB021654              26443356 1656 + 122929044 I
e ornAna1.chr4                  58039176 0 -  58987262 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e oryLat2.chr22                 17713695 1652 -  28810691 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e ficAlb2.chr2                 148476154 152 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221189              55280129 197 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH731579                503450 0 -    636928 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e sarHar1.chr1_GL834688_random    516523 5985 +   3395230 I
e anaPla1.KB742696               1244545 9705 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1969272 647 +   4979691 I
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr3                  13879943 9148 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=13266.000000
s hg38.chr8_KI270814v1_alt         82817 2 +    141812 AT
s ponAbe2.chr8                  59052350 2 + 153482349 AT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48130643 2 + 100215132 AC
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99338241 2 + 108792865 AT
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24004356 2 +  27210278 AT
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21185779 2 -  23169006 AC
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19209093 2 -  22931326 GT
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2803484 2 -   6207710 GT
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10839223 2 +  17242564 AT
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84033008 2 +  91571448 AC
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6806520 2 -  14545593 AC
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134104309 2 + 140925898 AC
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57837350 2 -  64289059 AT
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13609280 2 -  19722643 GC
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3031131 2 +   4816872 CC
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19409786 2 -  23789964 AC
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27616700 2 -  46401353 AT
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9964057 2 +  24341844 AC
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1030433 2 -   2788317 TT
i dasNov3.JH567436             C 0 C 0
s macEug2.GL109592                 97240 2 -    117391 GT
i macEug2.GL109592             C 0 I 6566
s melGal1.chr22                 13571633 2 -  14786829 AC
i melGal1.chr22                C 0 C 0
s chrPic2.chrUn_KK088237v1       5677285 2 -  22294289 AC
i chrPic2.chrUn_KK088237v1     C 0 C 0
s astMex1.KB882153               1887657 2 +   2696342 AT
i astMex1.KB882153             C 0 C 0
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e danRer10.chr17                18108214 2164 -  53345113 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e xenTro7.KB021654              26443356 1656 + 122929044 I
e ornAna1.chr4                  58039176 0 -  58987262 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e oryLat2.chr22                 17713695 1652 -  28810691 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e ficAlb2.chr2                 148476154 152 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221189              55280129 197 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH731579                503450 0 -    636928 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e sarHar1.chr1_GL834688_random    516523 5985 +   3395230 I
e anaPla1.KB742696               1244545 9705 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1969272 647 +   4979691 I
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530522886 8299 + 748055161 I
e taeGut2.chr3                  13879943 9148 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-6641.000000
s hg38.chr8_KI270814v1_alt         82819 8 +    141812 GCTCAATA
s ponAbe2.chr8                  59052352 8 + 153482349 GCTCAATA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48130645 8 + 100215132 GCTCAATA
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99338243 8 + 108792865 GCTCACCA
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24004358 8 +  27210278 GCTCACCA
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21185781 8 -  23169006 GCTCAGCA
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19209095 7 -  22931326 GCTTGCC-
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2803486 7 -   6207710 GCTTGCC-
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10839225 8 +  17242564 GCTCGCCG
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84033010 8 +  91571448 GCTCGCCG
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6806522 8 -  14545593 GCTCACCG
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134104311 7 + 140925898 GTGCA-TG
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57837352 7 -  64289059 GTGCA-CA
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13609282 7 -  19722643 GTGCG-GG
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3031133 7 +   4816872 GTGCA-TG
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19409788 8 -  23789964 GCTCACTG
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27616702 8 -  46401353 GCTCACCA
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9964059 8 +  24341844 GCTCACCG
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1030435 7 -   2788317 GCTCA-CG
i dasNov3.JH567436             C 0 C 0
s melGal1.chr22                 13571635 4 -  14786829 ----AGTT
i melGal1.chr22                C 0 I 10
s chrPic2.chrUn_KK088237v1       5677287 4 -  22294289 ----ACTG
i chrPic2.chrUn_KK088237v1     C 0 I 6413
s astMex1.KB882153               1887659 6 +   2696342 ACTCAA--
i astMex1.KB882153             C 0 C 0
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e danRer10.chr17                18108214 2164 -  53345113 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e xenTro7.KB021654              26443356 1656 + 122929044 I
e ornAna1.chr4                  58039176 0 -  58987262 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e oryLat2.chr22                 17713695 1652 -  28810691 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e ficAlb2.chr2                 148476154 152 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221189              55280129 197 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH731579                503450 0 -    636928 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                 97242 6566 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e sarHar1.chr1_GL834688_random    516523 5985 +   3395230 I
e anaPla1.KB742696               1244545 9705 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1969272 647 +   4979691 I
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530522886 8299 + 748055161 I
e taeGut2.chr3                  13879943 9148 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-26885.000000
s hg38.chr8_KI270814v1_alt         82827 20 +    141812 GACATTTCAGCAC------A-GGAAGC
s ponAbe2.chr8                  59052360 20 + 153482349 CACATTTCAGCAC------A-GGAAGC
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48130653 20 + 100215132 CACATTTCAGCAC------A-GGAACC
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99338251 20 + 108792865 CACGTTTCAGCAC------A-GGCAGC
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24004366 20 +  27210278 CACATTTCAGCAC------A-GGCAGC
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21185789 21 -  23169006 CACATTTCAGGAC------AGGGCGGC
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19209102  7 -  22931326 -------------------G-GATGGC
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2803493  7 -   6207710 -------------------G-GACGGC
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10839233 22 +  17242564 AGCCTTTCCAGAAC----AG-GACGGC
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84033018 22 +  91571448 AGCCTGGCAGGAAC----AG-GACAGC
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6806530 22 -  14545593 AGTCTTTTAGGAAC----AG-GGCAGC
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134104318 22 + 140925898 AGTCTTCTAGAAAC----AA-GACGGC
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57837359 22 -  64289059 AGTCTTTTAGAAAC----AA-GATAGC
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13609289 22 -  19722643 AGTCTTTTGGAAAT----AA-GACGGC
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3031140 22 +   4816872 AGTCTTTTGCAAAC----AA-GACAGC
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19409796 22 -  23789964 AGCCTTTTAGGAAC----AT-GACAGT
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27616710 21 -  46401353 CACATTTTTAGTC-----AG-GACAGC
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9964067 21 +  24341844 TGCACTTTCAGTC-----AG-GACACC
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1030442 22 -   2788317 GGCATATTAGGCAG----AG-GTCACC
i dasNov3.JH567436             C 0 C 0
s melGal1.chr22                 13571649 25 -  14786829 -GTCTTTGTAGGCCTTCTCA-AGGGGC
i melGal1.chr22                I 10 C 0
s astMex1.KB882153               1887665 19 +   2696342 -ACAGTCCTACTC------A-TGCAAC
i astMex1.KB882153             C 0 I 6275
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e danRer10.chr17                18108214 2164 -  53345113 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e xenTro7.KB021654              26443356 1656 + 122929044 I
e ornAna1.chr4                  58039176  0 -  58987262 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e oryLat2.chr22                 17713695 1652 -  28810691 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e ficAlb2.chr2                 148476154 152 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280129 197 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH731579                503450  0 -    636928 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                 97242 6566 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e sarHar1.chr1_GL834688_random    516523 5985 +   3395230 I
e anaPla1.KB742696               1244545 9705 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1969272 647 +   4979691 I
e chrPic2.chrUn_KK088237v1       5677291 6413 -  22294289 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530522886 8299 + 748055161 I
e taeGut2.chr3                  13879943 9148 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=28556.000000
s hg38.chr8_KI270814v1_alt         82847 6 +    141812 CTCTTA
s ponAbe2.chr8                  59052380 6 + 153482349 CTCTTA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48130673 6 + 100215132 CTCTTA
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99338271 6 + 108792865 CTCTGA
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24004386 6 +  27210278 CTCTCA
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21185810 6 -  23169006 CTCTCG
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19209109 5 -  22931326 CTCTA-
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2803500 5 -   6207710 CTCTA-
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10839255 5 +  17242564 CTCGA-
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84033040 6 +  91571448 CTCTCA
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6806552 6 -  14545593 CTCTTA
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134104340 6 + 140925898 CTCTTA
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57837381 6 -  64289059 CTCTTT
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13609311 6 -  19722643 CTCTTA
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3031162 6 +   4816872 CTCtta
i odoRosDiv1.KB229025          C 0 I 1457
s pteAle1.KB030580              19409818 6 -  23789964 CTGTCA
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27616731 6 -  46401353 CTCTGA
i loxAfr3.scaffold_20          C 0 I 4
s triMan1.JH594629               9964088 6 +  24341844 CTCTTA
i triMan1.JH594629             C 0 I 4
s dasNov3.JH567436               1030464 4 -   2788317 ATCT--
i dasNov3.JH567436             C 0 I 3
s melGal1.chr22                 13571674 6 -  14786829 TTCTTG
i melGal1.chr22                C 0 C 0
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e danRer10.chr17                18108214 2164 -  53345113 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e xenTro7.KB021654              26443356 1656 + 122929044 I
e ornAna1.chr4                  58039176 0 -  58987262 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e astMex1.KB882153               1887684 6275 +   2696342 I
e oryLat2.chr22                 17713695 1652 -  28810691 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e ficAlb2.chr2                 148476154 152 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221189              55280129 197 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH731579                503450 0 -    636928 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                 97242 6566 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e sarHar1.chr1_GL834688_random    516523 5985 +   3395230 I
e anaPla1.KB742696               1244545 9705 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1969272 647 +   4979691 I
e chrPic2.chrUn_KK088237v1       5677291 6413 -  22294289 I
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530522886 8299 + 748055161 I
e taeGut2.chr3                  13879943 9148 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-51113.000000
s hg38.chr8_KI270814v1_alt         82853 9 +    141812 -AATCCCTTC--
s ponAbe2.chr8                  59052386 9 + 153482349 -AATCCCTTC--
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48130679 9 + 100215132 -AATCCCTTC--
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99338277 9 + 108792865 -ACTCCCTCA--
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24004392 9 +  27210278 -ACTCCCTCA--
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21185816 7 -  23169006 ---CTCACGA--
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19209114 6 -  22931326 -ACCCAC-----
i vicPac2.KB632437             C 0 I 3
s camFer1.KB017763               2803505 6 -   6207710 -ACCCAC-----
i camFer1.KB017763             C 0 I 3
s orcOrc1.KB316907              10839260 6 +  17242564 -ACTCAC-----
i orcOrc1.KB316907             C 0 I 3
s equCab2.chr15                 84033046 6 +  91571448 -CCTTAC-----
i equCab2.chr15                C 0 I 3
s cerSim1.JH767782               6806558 6 -  14545593 -ATTTAC-----
i cerSim1.JH767782             C 0 I 3
s felCat8.chrA3                134104346 6 + 140925898 -ACTCAC-----
i felCat8.chrA3                C 0 I 3
s canFam3.chr17                 57837387 6 -  64289059 -ACTTAC-----
i canFam3.chr17                C 0 I 3
s musFur1.GL896914              13609317 6 -  19722643 -CCTTAC-----
i musFur1.GL896914             C 0 I 3
s pteAle1.KB030580              19409824 6 -  23789964 -ATTTAC-----
i pteAle1.KB030580             C 0 I 3
s loxAfr3.scaffold_20           27616741 5 -  46401353 -ACTTG------
i loxAfr3.scaffold_20          I 4 C 0
s triMan1.JH594629               9964098 5 +  24341844 -ACTTG------
i triMan1.JH594629             I 4 C 0
s dasNov3.JH567436               1030471 3 -   2788317 ---TTG------
i dasNov3.JH567436             I 3 C 0
s melGal1.chr22                 13571680 9 -  14786829 AACTCCT---AG
i melGal1.chr22                C 0 C 0
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e danRer10.chr17                18108214 2164 -  53345113 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e odoRosDiv1.KB229025            3031168 1457 +   4816872 I
e xenTro7.KB021654              26443356 1656 + 122929044 I
e ornAna1.chr4                  58039176 0 -  58987262 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e astMex1.KB882153               1887684 6275 +   2696342 I
e oryLat2.chr22                 17713695 1652 -  28810691 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e ficAlb2.chr2                 148476154 152 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221189              55280129 197 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH731579                503450 0 -    636928 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                 97242 6566 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e sarHar1.chr1_GL834688_random    516523 5985 +   3395230 I
e anaPla1.KB742696               1244545 9705 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1969272 647 +   4979691 I
e chrPic2.chrUn_KK088237v1       5677291 6413 -  22294289 I
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530522886 8299 + 748055161 I
e taeGut2.chr3                  13879943 9148 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=434679.000000
s hg38.chr8_KI270814v1_alt         82862 73 +    141812 --AAAGGAAAATGGGTG---TCATGAAAATG-TCAAGCCTGGCCTTCTC-----AC---------T-----ACTTACTCAAAAAGTAC-TTCCTAAGCG
s ponAbe2.chr8                  59052395 73 + 153482349 --AAAGGAGAATGGGTG---TCATGAAAATG-TCAAGCCTGGCCTTCTC-----AC---------T-----ACTTACTCAAAAAGTGC-TTCCTAAGCA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48130688 73 + 100215132 --AAAGGAAAATGGGTG---TCATGAAAATG-TCAAGCCTGGCCTTCTC-----AC---------T-----ACTTACTCAAAAAGTAC-TTCCTAAGCG
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99338286 76 + 108792865 --AAAGGAAAATAGATGTCCTCATGAAGATG-TCAAGCTGGGGCTTCCC-----AT---------G-----acttactcaacaaggac-ttcctaagca
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24004401 76 +  27210278 --AAAGGAAAATGGATGTCCTCATGAAGATG-TCAAGCTGGGGCTTCCC-----AC---------G-----ACTTACTCAAGAAGTAC-TTCCTAAGCA
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21185823 75 -  23169006 --GGAGGGAAATGCACGTCATCACAAACATG-TCAAACCTGGCCTGCCC-----AC---------T-----GCTCACTCACCAACT-C-TTCCTCAGCA
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19209123 63 -  22931326 --AGAGGAAA------------------ATG-CCAATCTTGGCCCTTTTTGTGGCG---------T-----ATCTACTCATCAAATGC-TTCCAAAGCA
i vicPac2.KB632437             I 3 C 0
s camFer1.KB017763               2803514 63 -   6207710 --GGAGGAAA------------------ATG-CCAATCTTGGCCCTTTTTGTGGCG---------T-----ATCTACTCATCAAATGC-TTCCAAAGCA
i camFer1.KB017763             I 3 C 0
s orcOrc1.KB316907              10839269 81 +  17242564 --AAAGGAAAAAGCGTTTCGTCATAAACATG-TCAACCTTGGCCCTTTCTGTTGAG---------T-----ATCGACCCAAGAAATGC-TTCCAGAGCA
i orcOrc1.KB316907             I 3 C 0
s equCab2.chr15                 84033055 81 +  91571448 --AAAGGAAAATGCATTTAGTCATCAAAATG-TCAAACTTGGCCTTTCTTGTTGAG---------T-----ATTTTCTCAACAAATAC-TTCCTAAGCA
i equCab2.chr15                I 3 C 0
s cerSim1.JH767782               6806567 80 -  14545593 --AAAGGAAAATGCATTTACTCATAAAAATG-TCAAACTT-CCCTTTTTTGTTGAG---------T-----ATTTACTCCACAAATAC-CTCCTAAGTG
i cerSim1.JH767782             I 3 C 0
s felCat8.chrA3                134104355 79 + 140925898 --AATGGAAAATGCGTGTGGTTATAAGAATG-TCACACTTGGCCTTTT---TTGGG---------T-----ACTGACTCAAAATATACTTTCCTAAGCC
i felCat8.chrA3                I 3 C 0
s canFam3.chr17                 57837396 81 -  64289059 --AAAGGAACATGCATTTGATCCTAAGAATG-TCAAATCTGACCCTTTTTGTTGAG---------T-----actcactcaaaaaatac-ttcctaagca
i canFam3.chr17                I 3 C 0
s musFur1.GL896914              13609326 82 -  19722643 --AAAGTTAAGTGTGTTTGGTCCTAAGAGTG-TCAAATCTGGCCCTTCTTGTTGAG---------T-----ACTGGCtcaaaaaacactttcctaagca
i musFur1.GL896914             I 3 C 0
s odoRosDiv1.KB229025            3032625 82 +   4816872 --AAAGGAAAATGCATTTGGTCATAAGAATG-TCAAATTTGACCCTTTTTGTTGAG---------T-----ACTGGttcaagaaatcctttcctaagca
i odoRosDiv1.KB229025          I 1457 C 0
s pteAle1.KB030580              19409833 85 -  23789964 --AAAGGAAAATGCATTTGGTCATAAAAAT------AAGTGGCCTCTTTTGTTGAGTATTTAAATT-----ATTTACTCAACTAATTC-TTCCCAAGCA
i pteAle1.KB030580             I 3 C 0
s loxAfr3.scaffold_20           27616746 75 -  46401353 --ACAGGAAAATGCATTTAGTCATAAAAATA-TCAAAATTGGTCTTC-T-----AC---------T-----acttattcagcaaatac-ttgttaagca
i loxAfr3.scaffold_20          C 0 I 14
s triMan1.JH594629               9964103 76 +  24341844 --AAAGGAAAATGTATTGAGTCATAAGAATA-TCAAAGTTGGTCTTTGT-----AC---------T-----acttattcaacaaatac-ttgcgaagca
i triMan1.JH594629             C 0 I 14
s dasNov3.JH567436               1030474 81 -   2788317 --AAAGGAAAAAGCATTTAGTCGTAAAAATA-TCCAGCTTGTTCTTTCT-----AC---------TCTACAACTTACCCAACAAATAC-TTCCTAAGCG
i dasNov3.JH567436             C 0 I 13
s melGal1.chr22                 13571689 79 -  14786829 GAAGAGCCAAAGTCAGTGACTGATGATTACGATCAAGACAGACCCTTCC-----TG---------A-----GCCTCATCATACCACTT-TTCCACAGGG
i melGal1.chr22                C 0 C 0
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e danRer10.chr17                18108214 2164 -  53345113 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e xenTro7.KB021654              26443356 1656 + 122929044 I
e ornAna1.chr4                  58039176  0 -  58987262 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e astMex1.KB882153               1887684 6275 +   2696342 I
e oryLat2.chr22                 17713695 1652 -  28810691 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e ficAlb2.chr2                 148476154 152 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280129 197 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH731579                503450  0 -    636928 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                 97242 6566 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e sarHar1.chr1_GL834688_random    516523 5985 +   3395230 I
e anaPla1.KB742696               1244545 9705 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1969272 647 +   4979691 I
e chrPic2.chrUn_KK088237v1       5677291 6413 -  22294289 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530522886 8299 + 748055161 I
e taeGut2.chr3                  13879943 9148 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=29623.000000
s hg38.chr8_KI270814v1_alt         82935 131 +    141812 CCTACTTTGAGT-------CACA---------TCTGGGTCACAGGAAAGTGTGGT-GGAAA--GTCTGCACATGGCCCAGAAAGCTCCTTCAGCTCCAACAT----TCAGA----ACCTGCCTGCCTGCCTT------------------------CTGAGTATCCCA-----AGGGCACTGTCTGA
s ponAbe2.chr8                  59052468 131 + 153482349 CCTACTTTGAGT-------CACA---------TCTGGGTCACAGGAAAGTGTGGT-GGAAA--GTCTGCACATGGCCCAGAAAGCTCCTTCATCTCCAGCAT----TCAGA----GCCTGCCTACCTGCCTT------------------------CTGAGTATCCCA-----AGGGCACTGTCTGT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48130761 135 + 100215132 CCTACTTTGAGT-------CACA---------TCTGGGTCACATGAAAGTGTGGT-GGGAA--GTCTGCACATGGCCCAGAAAGCTCCTTCAGCTCCAGCAT----TCAGAGCCTGCCTGCCTGCCTGCCTT------------------------CTGAGTATCCCA-----AGGGCACTGTCTGA
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99338362 114 + 108792865 cctgctttgagt-------cagg---------tacgggTCAGA-------------GGAAG--GTCTGCATAGGGCTTGGAGGGTTCCTTCAGGGTCAGCAT----TCGGA--------GCCTGCCGGCCAT------------------------CT-AGCAGCCCA-----AGGGCACCGCCTGA
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24004477 120 +  27210278 CCTGCTTTAAGT-------CAGG---------TATGGGACAGAGGA------GGT-GGAAG--GTCTGCATAGGGCTTGGAGGGTTTCTTCAGGGTCAGCAT----TCAGA--------GCCTGCCTGCCAT------------------------CT-AGTAGCCCA-----AGGGCACTGCCTGA
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21185898 100 -  23169006 CCTACTTTCACT-------CGGC---------TCTGGGTCAGAAAG------GGT-GGAAA--CTCTGCACATG------------CCTTCTGCGATGGCAC----TCGGA--------GCTTGCCTGGCCT------------------------CAGATGGCCCCA-----AGGGA---------
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19209186 105 -  22931326 CCTACGCTGGGC-------CTGG---------CCTGGGTCAAAGGA------GGT---------------TGTGCCCCTGAGGTTTCCTTCAGGGACAGCAC----TCTG---------GTCTGAGTGCCCG------------------------CAGGGCGGC--------CAGGGGCAGCCCGA
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2803577 105 -   6207710 CCTACGCTGCGC-------CTGG---------CCTGGGTGAGGGGA------GGT---------------TGTGCCCCTGAGGTTTCCTTTAGGGACAGCAC----TCTG---------GTCCGAGTGGCCG------------------------CAGGGTGGC--------CAGGGGCAGCCCGA
i camFer1.KB017763             C 0 C 0
s equCab2.chr15                 84033136  92 +  91571448 CCTACGTTGTGC-------CTGA---------TGTGGGTCAGAGGA------GGT-AGAAA--GTCTGCTTGTGCCTC-----------------------------------------ACTTGTGTGTCCG-------------------------CGTGCAGCCCAA----AGGGGACTGTGCGG
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6806647  92 -  14545593 CCTATTTTGTGC-------CGGA---------TCTGGGTCAGAGGA------GGC-AGATA--GTGTGCTCATGCCTC-----------------------------------------AACCGTGTGCTGC-------------------------TGAACCGTCCAA----AGGGGACCGTGTGG
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134104434 144 + 140925898 CCTACTTCATGC-------CAGA---------TCTGGGTCAGAAGA------GGTAAGAGA--GCCTGCTTACACCTCAGAGGCTTCCTTCAGGG-CAGCGT----tct----------gtttgtctgtccgtccatgtgtctgtcggtgtgCCCGCTGAGCCACACAC----AGGGTGCTATGTGG
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57837477 135 -  64289059 cctcctttgtgc-------caga---------tctgggtcaaaaga------ggc-agaaa--gcctgtgcatgcctc--aggTCTCCTTTAGGG-CAGTGC----TCT----------GTCCGTCTGTCTG----GGTATCTGTCGCTGTGCCTGCTGAGCAGCACAC------GGGGCTGTGTGG
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13609408 136 -  19722643 cctactctgtgc-------cagg---------tccGGGTCAGAAG-------GAC-AGAAA--GCCTG-TCCTACCTCAGAGGTTTCCTTTAGGG-CGGCAC----TTt----------gtccgtctgtccg----taggtctgt--ctgtGTCCGCTGAGCAGCACAA---AGGGGGGCTGCGTGG
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3032707 128 +   4816872 cctacttcgtgc-------caga---------tctgggTCAGAAGA------GGC-AGAAA--GTCTGCTCACGCCTCAGAGGTTTCCTTCAGGG-CAGCAC----TTT----------GTCCGTCTGTCCG----------------TGTGTCCACTGAGCAGCACAA---AAGGGGGCTGCATGG
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19409918 109 -  23789964 CCTACTTTGCTTGGGAAAGTAGA---------TCTGCGTCAGAGGA------GGG-GGA-----CCTGCCC--GCCTC--GGGCTCCCGCCGCAG-CAGC-------------------ATCCGC---TCCA------------------GGGCCACCATGCAATGCCA----AGGGCA--------
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27616835 121 -  46401353 caaactctgggc-------cagCAGTATTTCCCTTGGGTCAGAGGA------GGT-AG------------CATGGCCTAAAGGTTTCTTTCAGCAATAACAT----TTGTA--------GTCCGTCTACCCT------------------------TTGAACAGTTGTA----AGGGAATCGTTTGG
i loxAfr3.scaffold_20          I 14 C 0
s triMan1.JH594629               9964193 121 +  24341844 catactctgagc-------cagcagggtttccctggggtcagagGA------GGT-AG------------CATGCCTTAAAAGTTTCTTTCAGCAATAACGT----TCTGA--------GTCTGTCCACCCT------------------------TTGAAGAGTCAGA----AGAGAATCGTTTGG
i triMan1.JH594629             I 14 C 0
s dasNov3.JH567436               1030568 129 -   2788317 CAGATACTGGG--------CAGC-GTGTTTTCTCAGGGTCAGAGGA------CAT-CAA----GTATGCTCATGCCTTAAAGGTTTCTTTATACAACAACCT--TCTCTGA--------GTCTGTCTACCCT------------------------TTGAAACAGCCTA----AGGGGATCGTTGGG
i dasNov3.JH567436             I 13 C 0
s melGal1.chr22                 13571768 134 -  14786829 ACACCCTCgaat-------cata----gtatcacagagtcaccaag------gtt-ggaaaagacttgcaagttcttccagtccaaccAGTAAGGCCATCACAGCTCCAGA--------ACATGGCTGTCCT-------------------------TGGGTACTCATGTAATAGAGAACTGTTT--
i melGal1.chr22                C 0 C 0
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e danRer10.chr17                18108214 2164 -  53345113 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e xenTro7.KB021654              26443356 1656 + 122929044 I
e ornAna1.chr4                  58039176   0 -  58987262 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382   0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820   0 -   5414369 I
e araMac1.AOUJ01470298               637   0 -       895 I
e astMex1.KB882153               1887684 6275 +   2696342 I
e oryLat2.chr22                 17713695 1652 -  28810691 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e ficAlb2.chr2                 148476154 152 + 157563209 I
e anoCar2.chr1                 148577473   4 + 263920458 I
e pseHum1.KB221189              55280129 197 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214   0 -  25666195 I
e allMis1.JH731579                503450   0 -    636928 I
e falPer1.KB390952               2753956   0 -  18327016 I
e falChe1.KB397350               1707310   0 -   3649919 I
e macEug2.GL109592                 97242 6566 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e sarHar1.chr1_GL834688_random    516523 5985 +   3395230 I
e anaPla1.KB742696               1244545 9705 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1969272 647 +   4979691 I
e chrPic2.chrUn_KK088237v1       5677291 6413 -  22294289 I
e pelSin1.JH211373               2650239   0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530522886 8299 + 748055161 I
e taeGut2.chr3                  13879943 9148 - 112617285 I
e orcOrc1.KB316907              10839350   0 +  17242564 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-39286.000000
s hg38.chr8_KI270814v1_alt         83066 27 +    141812 C-------TCTTTCATACCCACC-----ATTTGTCTCCC
s ponAbe2.chr8                  59052599 27 + 153482349 C-------TCTTTCATACCCACC-----ATTTGTCTCCC
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48130896 27 + 100215132 C-------TCTTTCATACCCACC-----ATTTGTCTCCC
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99338476 32 + 108792865 C-------TCTTCACTCCCCACCTGGGAGTTTCTCTTCC
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24004597 27 +  27210278 C-------TCTTCACTCCCCACC-----ATTTCTCTTCC
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21185998 13 -  23169006 -------------CGTCCCCACC-------------TCC
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19209291 17 -  22931326 C-----------------CTCCT-----GGTTCTCCTCC
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2803682 17 -   6207710 c-----------------ctcct-----ggttctcctcc
i camFer1.KB017763             C 0 C 0
s equCab2.chr15                 84033228 34 +  91571448 CCAGTAACGGTTCTCCACCTCCC-----AGTTCTCCTCC
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6806739 34 -  14545593 CCAGTAATGGTTCCTGACCTCCC-----AGTTCCCCTCC
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134104578 19 + 140925898 CAGGAGA-----------CTCCC---------TCCCTCC
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57837612 17 -  64289059 TGGGA-------------CTCCC---------TCCCTCC
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13609544 27 -  19722643 TGCGAGAc---tccctccctccc---------tccctcc
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3032835 19 +   4816872 CGGGAGA-----------CTCcc---------tccctcc
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19410027 12 -  23789964 ------------------CGCCC---------TGCCTCC
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27616956 34 -  46401353 CCAATAACTATTCCCTACCTACT-----ATTTCTCATTC
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9964314 34 +  24341844 CCAATAACTATTCCATCCCTACT-----ATTTCTCTTCT
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1030697 33 -   2788317 CCAACAACTATTCC-TTCCTACC-----ATTTCTCTTCC
i dasNov3.JH567436             C 0 C 0
s melGal1.chr22                 13571902 30 -  14786829 ----TTACTTCTACAAGGCCATT-----ATTCTTTTCCC
i melGal1.chr22                C 0 n 0
s xenTro7.KB021664                761652 27 +   1472248 -------CCTCTCCATCCATATT-----TTTTCTCTCCC
i xenTro7.KB021664             n 1656 C 0
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e danRer10.chr17                18108214 2164 -  53345113 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e ornAna1.chr4                  58039176  0 -  58987262 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e astMex1.KB882153               1887684 6275 +   2696342 I
e oryLat2.chr22                 17713695 1652 -  28810691 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e ficAlb2.chr2                 148476154 152 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280129 197 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH731579                503450  0 -    636928 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                 97242 6566 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e sarHar1.chr1_GL834688_random    516523 5985 +   3395230 I
e anaPla1.KB742696               1244545 9705 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1969272 647 +   4979691 I
e chrPic2.chrUn_KK088237v1       5677291 6413 -  22294289 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530522886 8299 + 748055161 I
e taeGut2.chr3                  13879943 9148 - 112617285 I
e orcOrc1.KB316907              10839350  0 +  17242564 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-25527.000000
s hg38.chr8_KI270814v1_alt         83093 62 +    141812 ----------TGGAC-TTCTTGCTAA---ATCCCTG----TCTTCA---------CTTCCTCACTTAGGGAATTCATGCCAGCTCTCTG--
s ponAbe2.chr8                  59052626 62 + 153482349 ----------TGGAC-TTCTTGCTAA---ATCTCTG----TCTTCA---------CCTCCTCACTTGGGGAATTCATGCCAGTTCTCTG--
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48130923 62 + 100215132 ----------TGGAC-TTCTTCCTAA---ATCCCTG----TCTTCA---------CCTCCTCACTGAGGGAATTCATGCCAGTTCTCTG--
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99338508 61 + 108792865 ----------TGGAC-TTCCTCTCTA---GACTCTG----TCGTCA---------CTTCCTCACTCAGGGAAGCCACACCAGTTCTCT---
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24004624 63 +  27210278 ----------TGGACTTTCCTCTCTA---GTCTCTG----TTGTCA---------CTTTCTCACTCAGTGAAGCCACACCAGTTCTCCG--
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21186011 42 -  23169006 ----------CACAT-CTCTCCT------GTTTCTG----TCTTCA---------CCTCCTCCCTC-----------------TCCCCA--
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19209308 59 -  22931326 ----------AGCAC--CCTCCCCAC---CCCTCTTCAAGCAGTCT---------CCTCCTCGCT-AGCGATGACATGACTCAG-------
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2803699 59 -   6207710 ----------agcac--cctccccac---ccctcttcatgccgcct---------cctcctcGCT-AGCAATGTCATGACTCAG-------
i camFer1.KB017763             C 0 C 0
s equCab2.chr15                 84033262 25 +  91571448 ----------T--------------------------------------------ACTCCTAAGTCAGTGAAGTCACGA------------
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6806773 59 -  14545593 ----------TGCACTTTCTCCCTGT---GCCCTCC----TCATCT---CCCTCCACTCCTAACTCAGTGAAGTCATGA------------
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134104597 63 + 140925898 ----------TGGGATTTCTCCCTGC---TGCTCTC----CACCCG---------CCTCCTCGCTGAGTGAGGTCTTGCCAGGGCTCTG--
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57837629 59 -  64289059 ----------TCCTATTTCTTCCCAC---TCCTCTC----CACCCA---------CCTC----CTGAGCGGGGCCTTGCCAGGGCTCTG--
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13609571 61 -  19722643 ----------tccacgctctctctgc---tccccgc----cacccg---------cctccTGGCTGAGTGAGGTCTTGC--GGGCTCTG--
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3032854 63 +   4816872 ----------tccactttctccctgt---cccttgc----cacctg---------cctcctggctGAGTGAGGTCTTGCCAGGGCTCTG--
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19410039 56 -  23789964 ----------CATCCTTTCTCCCGAT---CCCTCCC---ATCTCCC---------GCTCAGCACTCAGCAAAGTCGGGCCG----------
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27616990 72 -  46401353 ----------CGTACTTCTTCCTTGT---TCCTCTT----TCTTCATTTCCTCCCTCTCCTCTCTTAGGGAAGGCATGCTAGTTCTCCT--
i loxAfr3.scaffold_20          C 0 I 1
s triMan1.JH594629               9964348 72 +  24341844 ----------CATACTTCTTCCCTAT---TCTTCTT----TCTTCACTTCCTCCCTCTCCTCACTTAGGGAAGGCATGCCAGTTCTCCT--
i triMan1.JH594629             C 0 I 1
s dasNov3.JH567436               1030730 74 -   2788317 ----------CATGCTT-TCCCCTATCCCTCCTCGT----TCTTCATTACCTCCCTCTCCTCACCTCATAAAGCCATGCCAGTTCTCTT--
i dasNov3.JH567436             C 0 I 1
s xenTro7.KB021664                761679 75 +   1472248 TGCAAGTGTTGCTGCCTCCTTATCTT---CCCTttt----ctttct---------tgccttcactctgtttatccctttcagtcttttctt
i xenTro7.KB021664             C 0 C 0
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e danRer10.chr17                18108214 2164 -  53345113 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e ornAna1.chr4                  58039176  0 -  58987262 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e astMex1.KB882153               1887684 6275 +   2696342 I
e oryLat2.chr22                 17713695 1652 -  28810691 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e ficAlb2.chr2                 148476154 152 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280129 197 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH731579                503450  0 -    636928 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                 97242 6566 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e sarHar1.chr1_GL834688_random    516523 5985 +   3395230 I
e melGal1.chr22                 13571932  0 -  14786829 I
e anaPla1.KB742696               1244545 9705 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1969272 647 +   4979691 I
e chrPic2.chrUn_KK088237v1       5677291 6413 -  22294289 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530522886 8299 + 748055161 I
e taeGut2.chr3                  13879943 9148 - 112617285 I
e orcOrc1.KB316907              10839350  0 +  17242564 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=26749.000000
s hg38.chr8_KI270814v1_alt         83155 5 +    141812 ACTTG
s ponAbe2.chr8                  59052688 5 + 153482349 ACTTG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48130985 5 + 100215132 ACTTG
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99338569 5 + 108792865 CCTTG
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24004687 5 +  27210278 CCTTG
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21186053 5 -  23169006 CTTAG
i otoGar3.GL873541             C 0 C 0
s orcOrc1.KB316907              10839350 5 +  17242564 ACTCG
i orcOrc1.KB316907             C 0 C 0
s felCat8.chrA3                134104660 5 + 140925898 TCTCG
i felCat8.chrA3                C 0 I 36
s canFam3.chr17                 57837688 5 -  64289059 TCTTG
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13609632 5 -  19722643 CCTCG
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3032917 5 +   4816872 CCTTG
i odoRosDiv1.KB229025          C 0 C 0
s loxAfr3.scaffold_20           27617063 5 -  46401353 CCTTG
i loxAfr3.scaffold_20          I 1 C 0
s triMan1.JH594629               9964421 5 +  24341844 CCTTG
i triMan1.JH594629             I 1 C 0
s dasNov3.JH567436               1030805 5 -   2788317 CCTTG
i dasNov3.JH567436             I 1 C 0
s xenTro7.KB021664                761754 5 +   1472248 ccttc
i xenTro7.KB021664             C 0 C 0
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e vicPac2.KB632437              19209367 0 -  22931326 C
e camFer1.KB017763               2803758 0 -   6207710 C
e danRer10.chr17                18108214 2164 -  53345113 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e ornAna1.chr4                  58039176 0 -  58987262 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e astMex1.KB882153               1887684 6275 +   2696342 I
e oryLat2.chr22                 17713695 1652 -  28810691 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e ficAlb2.chr2                 148476154 152 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221189              55280129 197 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH731579                503450 0 -    636928 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                 97242 6566 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e sarHar1.chr1_GL834688_random    516523 5985 +   3395230 I
e melGal1.chr22                 13571932 0 -  14786829 I
e anaPla1.KB742696               1244545 9705 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1969272 647 +   4979691 I
e chrPic2.chrUn_KK088237v1       5677291 6413 -  22294289 I
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530522886 8299 + 748055161 I
e taeGut2.chr3                  13879943 9148 - 112617285 I
e equCab2.chr15                 84033287 0 +  91571448 C
e pteAle1.KB030580              19410095 0 -  23789964 C
e cerSim1.JH767782               6806832 0 -  14545593 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=16651.000000
s hg38.chr8_KI270814v1_alt         83160 15 +    141812 ATCTATGACCCT-------------------GCT
s ponAbe2.chr8                  59052693 15 + 153482349 ATCTATGACCCT-------------------GCT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48130990 15 + 100215132 ATCTATGACCCT-------------------GCT
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99338574 34 + 108792865 ACCTACAGCACCGCTCATCACATCACGCCAAGCT
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24004692 15 +  27210278 ACCTATAGCACC-------------------ACT
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21186058  5 -  23169006 AGTTA-----------------------------
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19209367  8 -  22931326 -------ACAGG-------------------GCT
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2803758  8 -   6207710 -------ACAGG-------------------GCT
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10839355 14 +  17242564 -ACTAGGACAGT-------------------GCC
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84033287 13 +  91571448 --AAAGGACAGT-------------------GCT
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6806832 13 -  14545593 --CTAGGACAGT-------------------GCT
i cerSim1.JH767782             C 0 C 0
s canFam3.chr17                 57837693 14 -  64289059 -ACTAGGATAGT-------------------GTT
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13609637 14 -  19722643 -ACTAGGACAGT-------------------GCT
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3032922 14 +   4816872 -ACTGGGACAGT-------------------GCT
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19410095 11 -  23789964 ----AGGGCAGT-------------------GCT
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27617068 15 -  46401353 ACCTTGGGCAGT-------------------GCT
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9964426 15 +  24341844 ACCTAAAACAGT-------------------GCT
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1030810 15 -   2788317 ACCCAGGACAGT-------------------GCT
i dasNov3.JH567436             C 0 C 0
s xenTro7.KB021664                761759 15 +   1472248 tttcCTAACCTT-------------------GAT
i xenTro7.KB021664             C 0 n 0
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e danRer10.chr17                18108214 2164 -  53345113 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e felCat8.chrA3                134104665 36 + 140925898 I
e ornAna1.chr4                  58039176  0 -  58987262 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e astMex1.KB882153               1887684 6275 +   2696342 I
e oryLat2.chr22                 17713695 1652 -  28810691 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e ficAlb2.chr2                 148476154 152 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280129 197 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH731579                503450  0 -    636928 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                 97242 6566 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e sarHar1.chr1_GL834688_random    516523 5985 +   3395230 I
e melGal1.chr22                 13571932  0 -  14786829 I
e anaPla1.KB742696               1244545 9705 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1969272 647 +   4979691 I
e chrPic2.chrUn_KK088237v1       5677291 6413 -  22294289 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530522886 8299 + 748055161 I
e taeGut2.chr3                  13879943 9148 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=60772.000000
s hg38.chr8_KI270814v1_alt         83175 11 +    141812 CATCACTGTA-G
s ponAbe2.chr8                  59052708 11 + 153482349 CATCACTGTA-G
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48131005 11 + 100215132 CATCACCGTA-G
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99338608 11 + 108792865 CATCACTGTA-G
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24004707 11 +  27210278 CATCACTGTA-G
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21186063 11 -  23169006 CATCACTGTA-A
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19209375 10 -  22931326 CATCCT-GCA-G
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2803766 10 -   6207710 CATCCT-GCA-G
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10839369 11 +  17242564 CATCATCACA-G
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84033300 11 +  91571448 CATCGCCACA-G
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6806845 11 -  14545593 CACCGCTGTA-G
i cerSim1.JH767782             C 0 C 0
s canFam3.chr17                 57837707 11 -  64289059 CATCACTGCA-G
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13609651 11 -  19722643 CGTCGTTACA-G
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3032936 11 +   4816872 CATTGTTGCA-G
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19410106 11 -  23789964 CGCCGACCTA-G
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27617083 11 -  46401353 CACCACTTTA-G
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9964441 11 +  24341844 CATCACTTTA-G
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1030825 12 -   2788317 TATTACTTCACG
i dasNov3.JH567436             C 0 C 0
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e danRer10.chr17                18108214 2164 -  53345113 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e felCat8.chrA3                134104665 36 + 140925898 I
e xenTro7.KB021664                761774  0 +   1472248 I
e ornAna1.chr4                  58039176  0 -  58987262 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e astMex1.KB882153               1887684 6275 +   2696342 I
e oryLat2.chr22                 17713695 1652 -  28810691 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e ficAlb2.chr2                 148476154 152 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280129 197 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH731579                503450  0 -    636928 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                 97242 6566 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e sarHar1.chr1_GL834688_random    516523 5985 +   3395230 I
e melGal1.chr22                 13571932  0 -  14786829 I
e anaPla1.KB742696               1244545 9705 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1969272 647 +   4979691 I
e chrPic2.chrUn_KK088237v1       5677291 6413 -  22294289 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530522886 8299 + 748055161 I
e taeGut2.chr3                  13879943 9148 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=24179.000000
s hg38.chr8_KI270814v1_alt         83186 6 +    141812 GAGAAA
s ponAbe2.chr8                  59052719 6 + 153482349 GAGaaa
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48131016 6 + 100215132 GAGAGA
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99338619 6 + 108792865 AAGATG
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24004718 6 +  27210278 AAGATA
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19209385 6 -  22931326 AATGAG
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2803776 6 -   6207710 AATAAG
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10839380 6 +  17242564 AAGAAA
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84033311 6 +  91571448 AGGGAA
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6806856 6 -  14545593 AAGGAA
i cerSim1.JH767782             C 0 C 0
s musFur1.GL896914              13609662 6 -  19722643 AACAAA
i musFur1.GL896914             C 0 C 0
s pteAle1.KB030580              19410117 6 -  23789964 AAGAAA
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27617094 6 -  46401353 GAGAAG
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9964452 6 +  24341844 GAGAAG
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1030837 6 -   2788317 GAGAAG
i dasNov3.JH567436             C 0 C 0
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e danRer10.chr17                18108214 2164 -  53345113 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e odoRosDiv1.KB229025            3032947 0 +   4816872 C
e canFam3.chr17                 57837718 0 -  64289059 C
e felCat8.chrA3                134104665 36 + 140925898 I
e xenTro7.KB021664                761774 0 +   1472248 I
e ornAna1.chr4                  58039176 0 -  58987262 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e astMex1.KB882153               1887684 6275 +   2696342 I
e oryLat2.chr22                 17713695 1652 -  28810691 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e ficAlb2.chr2                 148476154 152 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221189              55280129 197 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH731579                503450 0 -    636928 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                 97242 6566 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e sarHar1.chr1_GL834688_random    516523 5985 +   3395230 I
e melGal1.chr22                 13571932 0 -  14786829 I
e anaPla1.KB742696               1244545 9705 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1969272 647 +   4979691 I
e chrPic2.chrUn_KK088237v1       5677291 6413 -  22294289 I
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530522886 8299 + 748055161 I
e taeGut2.chr3                  13879943 9148 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21186074 0 -  23169006 C
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=410886.000000
s hg38.chr8_KI270814v1_alt         83192 157 +    141812 AAAAAAAAAATACAAC--CACCTTTCCATGCTGTCAACTTAATTATCCCTCCCACATTTATCTCATGCCTGAAATGTATTACCTAAATGTTGAGTGTGCAGttcagggtaa--aactga-cc-aac----tggagcacatccaaagaagagcaaccatggtaaaaag
s ponAbe2.chr8                  59052725 159 + 153482349 aaaaaaaaaaaaaaaaaaCACCTTTCCATGCTGTCAATTTAATTATCCCTTACACATTTATCTCATGCCTGAAATGTTTTACCTAAATGTTGAGTGTGCAGttcagggtaa--aactga-cc-aac----tggagcacatccaaagaagagcaaccatggtaaaaag
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48131022 156 + 100215132 AAAAAAAACA-ACAAC--CACCTTTCCATGCTGTCAACTTAATTATCCCTTCCACATTTATCTcatgcctgaaatgtattacctaaatgttgagtgtgcagttcagggtaa--aactga-cc-aac----tggagcacattcaaagaagagcaaccatggtaaaaag
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99338625 142 + 108792865 A----------CCAAC--CACCTCTCTATGCTGTCGGCTTAATTATCCTTTCCACCTTCATCTCACGCCTGACCTGTATT-CCTAAATGTCCAGTGTGCAGTTCAGGGTAA-CAACTAA-CC-CAC----CT--gcacatccaaagaagagccaccaggg---aaag
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24004724 145 +  27210278 A----------CCAAC--CACCTTTCTATGCTGTCGCCTTAATTATCCTTTCCACCTTCATTTCATGCCAGACCTGTATT-CCTAAATGTCCAGTGTGCAGTTCAGGGTAA-AAACTAA-CC-CAC----CT--gcacatccaaagaagagtcaccagggtaaaaag
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21186074 123 -  23169006 -----------CAAAC--CACCCCTGCAGG----------------------CACGTTGATCTTAGGCCCGAACAGTATTTCCTAAACGTCAGGTGTGCAGGTCAGGGTAATAAACTAA-GC-aac----gggggcacagccaggcaagagcgaccagggt---aag
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19209391 136 -  22931326 ----------ACAAGT--GACATTTTCTGTTTGCAAGCTTTGTCCCCCTTTCCGTGTTTATCTTATGCTCAA-CTGT---------TAGTCAAGTGTGTGGGGCAGGGTGC-GAGCCGA-CC---c----tggtacacatcacgagacatgtgaccagggcgagagg
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2803782 136 -   6207710 ----------ACAAGT--GACGTTTTCCGTTTGCAAGCTTTGTCCCCCTTTCCGTGTTTATCTTATGCTCAA-CTGT---------TAGTCAAGTGTGCGGGGCAGGGTGC-GAGCCGA-CC---c----tggtgcacatcgcgagacacgtgaccagggcgagagg
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10839386 139 +  17242564 ----------ACAAGT--GACCTTTCCCGTTTTTAAGCTTCGTTCCCCTTTCCACGTCTCTCTCATGCTCGC-CTGTGCTC-----GAGTCCAGTGTGTGGGTCAGGGTAC-CAGCTGACCC---c----cggagtgcatcccgagacaggtgaccagggt--gagg
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84033317 147 +  91571448 ----------A-AAGC--AAGCTTCTCAGTTCTTAAGCTTCACTCCTCTTTCCACATTTATCTCATGCTTGAGCTGCATTGCGTAAGTGTCAAGTGTGCAGCTCAGGGTAT-AAactga-cc-aac----tggagcacgtccaaagaagagtgaccagggtgagaag
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6806862 148 -  14545593 ----------ACAAAC--GACCTTCTCAGTTTTTAAGCTTCACTCCCCTTTCCATGTTTATCTCACGCTTGAGCTGCGTTATATAAGTGTCAAGTGTGCAGTTCAGGGTAT-CAactga-cc-aag----tggagcacgtccaacaaagagtgaccagggtgagaat
i cerSim1.JH767782             C 0 C 0
s pteAle1.KB030580              19410123 144 -  23789964 ----------ACAGAC--CCCCTTTCCGGTT-TTAAGCGTCATTCCCCCTTCCACGTTCATCTCCCGCTTAAGCTAGAGCATG---ATGTCAAGTGTGCAGTCCAGGCTCT-AAactga-cc-aac----tggagcatgtccaaacaagagtggccagggagagaag
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27617100 131 -  46401353 -------AAAACAAAC--CACCTTTTCATTTTGTAAACTTTGTTCTC-------------TGTCGTACC-----------ACAAAAATGTCAAGTGTACGATTCAGTGTAT-AAactga-cc-aactggatggagcatgtccaaagaagagtggcaagggtgtgaag
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9964458 129 +  24341844 -------AAAACAAAC--CACCTTTTCATTTTTAAAACTTCGTTCTCC-----------ACGTTGTACT-----------ACAAAAATGTCAAGTGTACTATTCAGCATAT-AAactga-cc-agc----tggaacatgtccaaagaagagtgactagggtgagaag
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1030843 144 -   2788317 -------AAAACAAAC--CACCTTTTCATTTTATAAATGTGATTCTCCTTTCCAAATTAATCTCATGCTTGA--------ACATAAATGTGCACTATacatttcagggaat-acactga-ctaagc----tggcacatgtccaaagaagaatgaacaggatgagaag
i dasNov3.JH567436             C 0 C 0
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e musFur1.GL896914              13609668   0 -  19722643 C
e danRer10.chr17                18108214 2164 -  53345113 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e odoRosDiv1.KB229025            3032947   0 +   4816872 C
e canFam3.chr17                 57837718   0 -  64289059 C
e felCat8.chrA3                134104665  36 + 140925898 I
e xenTro7.KB021664                761774   0 +   1472248 I
e ornAna1.chr4                  58039176   0 -  58987262 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382   0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820   0 -   5414369 I
e araMac1.AOUJ01470298               637   0 -       895 I
e astMex1.KB882153               1887684 6275 +   2696342 I
e oryLat2.chr22                 17713695 1652 -  28810691 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e ficAlb2.chr2                 148476154 152 + 157563209 I
e anoCar2.chr1                 148577473   4 + 263920458 I
e pseHum1.KB221189              55280129 197 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214   0 -  25666195 I
e allMis1.JH731579                503450   0 -    636928 I
e falPer1.KB390952               2753956   0 -  18327016 I
e falChe1.KB397350               1707310   0 -   3649919 I
e macEug2.GL109592                 97242 6566 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e sarHar1.chr1_GL834688_random    516523 5985 +   3395230 I
e melGal1.chr22                 13571932   0 -  14786829 I
e anaPla1.KB742696               1244545 9705 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1969272 647 +   4979691 I
e chrPic2.chrUn_KK088237v1       5677291 6413 -  22294289 I
e pelSin1.JH211373               2650239   0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530522886 8299 + 748055161 I
e taeGut2.chr3                  13879943 9148 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=824486.000000
s hg38.chr8_KI270814v1_alt         83349 223 +    141812 aagctacatcatca-t-----------gtctgctaag-gaaggcttgaaataact--atgaatttttattctggagaaaacgagact------------aaac-aaaaccaataaaa------------------attactc-aaaaaatatgaagcgttgttatgaagacaaagg----aAGAGGCACTTTCTAAAGAGAC-------TCAATGTAAACACTGGAAAA--CAT-GGCAGCATTTTCTTTAAACAGCATTCAAT----GATGAAAT-GGCTACTT--------------------GTGG
s ponAbe2.chr8                  59052884 215 + 153482349 aagctacatcatca-t-----------gtctgttaag-gaaggcttgaaataact--atgaatttttattctggagaaaatgagact------------aaa----aaccaataaaa------------------attactc-aaaaaatatgaaggtttgttatgaagacag---------gagaCACTTTCTAAAGAGCC-------TCAGTGTAGACACTGGAAAA--CAT-GGCAGCATTTTCTTTAAACAGCGTTCGAT----GATGAAAT-GGCTACTT--------------------GTGG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48131178 219 + 100215132 aagctaaatcatca-t-----------gtctgctaag-gaaggcttgaaataact--atgaatttttattctggagaaaatgagact------------aagc-aaaaccaataaaa------------------aatactc-aaaaaatatgaagggttgttatgaagacga--------agAGGCACTTTCTAAAGAGCC-------TCAATGTAGACACTGGAAAA--CAT-GGCAGCATTTTCTTTAAACGGTGTTCAAT----GATGAAAT-GGCTACTT--------------------GTGG
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99338767 225 + 108792865 gagccacaacatca-t-----------gtctgctaag-gtgggcttgaaatagc---atgaatggtcattctgcagaaaaggagact------------agacaaaaaccaatagaa------------------agcactc--aaaaccagacagagctgccatgaagacaaggg----aggaagagctttctgtagagcc-------tcaaagtagacactacaaggcccaa-gggagcacattctttcaaaggtgttcaat----gatgaaatgggctactc--------------------gggg
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24004869 246 +  27210278 gagccacaaaatca-t-----------gtctgctaag-gtgggcttgaaatagc---gtgaatggttattctggagaaaaggagact------------agacaaaaaccaatagaa------------------agcactc-aaaaaacagacagagctgccatgaagacaaggg----aggaagagctttctgtagagcc-------tcaaagtagatactaCAAGACTCAA-GAGAGCATGTTCTTtcaaaggtgttcaat----gatgaaatgggctactcagggttccagagacctccctgGGG
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21186197 231 -  23169006 gagccacagaaccg-c-----------atctgccaag-aagggcttgaaatacct--gtcaatttttattctggaggaaaggggact------------gaac-aaaacagacagga------------------agcactcaaaaaaatacacagggctgccatgatgacaaaggcagacagaggcactttctgtagggcc-------tcaaggAAGCCTCTAGAAGACATAA-GGCAGCATCTCCATTAAGAGTCACTCAAC----AGTGACTCGGGATACTT--------------------GGCA
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19209527 225 -  22931326 cagccatg-aatca-c-----------atcaggtaag-aagggcttgaacttgtaa-ctgggtttctattttggagaaaagaagact------------aaat-aaaagccacagaa------------------agcactc--aaaaacatgaag-gttgcc-cgaagagaaggg----agcagac-ttccctgacgtgcc-------tgagggcagacattgcataacgtaa-ggcagcat-ttcctagaaagctgaacaactttctaagaaatgggttactt--------------------tggg
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2803918 225 -   6207710 cagccatg-aatca-c-----------atcagttaag-aagggcttgaacttgtaa-ctgggtttctattttggagaaaagaagact------------aaat-aaaagccacagaa------------------agcactc--aaaaacatgaag-gttgcc-caaagagaaggg----agcagac-ttccccgccgtgcc-------tcagggcagaCGTTGCATAACGTAA-GGCAGCAT-TTCCTAGAAAGCTGAACAACTTTCTAAgaaatgggttactt--------------------tggg
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10839525 221 +  17242564 cagccatg-cgtca-c-----------atcggttagt-aagggcttggactagtaa-ctggatttttatcctggacaaaaggaggct------------aaac-aaaagccacggaa------------------agcactc--aaaaatataaag-ggtgccatgaagaggaggg----cgcagacttttcctgcagagcc-------ccaaggcagacactaCACAACGC-A-GGCAGCGT-GTCTTAGGAAGCTGTTCAAC-----ATGAAATGGGTTCTTC--------------------TGGG
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84033464 233 +  91571448 cagccatgaaatca-cagcagttaagaagcagttaag-aagggcttaaaatagtca-atgaacttttattctagaaaaaaggagact------------aaac-aaaaaccacagaa------------------agcactc--aaaaatataaag-gctgccacgaagagaaggg----ggtagacgttttctgcagagcc-------tcaaggcagacactagaaGACAC-A-GGCAGCAT-TTCTTAGAAAGCTGTTCAAC-----AGGAAATGGGTTACTT--------------------TGGG
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6807010 221 -  14545593 cagccacgaaatca-c-----------atcagttaag-aagggcttgaaatagtaa-atgaacttttattctagagaaaaggagact------------aaac--aaaaccaaagaa------------------agcactc--aaaaatataaag-gctgccacaaagagaaggg----ggtagacattttctgcagagcc-------tcaaggtagacactggaagacat-a-ggtagCAT-TTCTTAGAAAGCTTTTCAAC-----ATGAAATCGGTTACTT--------------------TGGG
i cerSim1.JH767782             C 0 C 0
s pteAle1.KB030580              19410267 214 -  23789964 cagccatgaaatca-c-----------atcagttaag-aagagcttgaaatagtaa-cttaacttttattctggagaaaaggagact------------aaac-agaaaccacagaa------------------agcgctc--gaaaatataaag-gctgccgtgaagaaaaggg-------agatgttttctgcagagca-------tcacggaagacaCTGGAAGACGTAA-GGCGGCAT-TGCTTAGAAAGTGGTTCGAC-----GTGACACA------TT--------------------TAGG
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27617231 225 -  46401353 gacccacaaaatta-t-----------atcagataac-aagggtttgtaataact--gtgaatttttattcaggacaaaaaaggact------------aaac-aaaaatgatagaa------------------agcactc--aaaaatataaagggctgccatgaagagagggg----agtagtcatttcttgtagcacc-------tcaaggtagatactagaagacgtaa-ggcagcattttcctaaaaggctgttcaac----aatgaaatgggcatttt--------------------tggg
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9964587 223 +  24341844 gacccacgaaatcc-t-----------atcaggtaac-aagggtttgtaataac----tgaatttttattctggagaaaaaaggact------------aaac-aaaaacgatagaa------------------agcactc--aaaaatatgaagggctgccatgaagggcgggg----agcagacattttctccagcgcc-------tcaaggtagacactagaagacgtaa-ggcagcattttcttaaaaggttgttcaac----aatgaaatgggcatttt--------------------tggg
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1030987 208 -   2788317 gagatgcaaaatcatt-----------atccgctgag-aagggcttgaaataac----tgaatttttattctttagaaagga-gact------------aaac-aa-----atggaa------------------agtgccc--ccaaataaaaagggctgccataaagaaaagag----agtagacattttcagtaaaatc-------tcaaagcagacactagaagacacaa-ggaaccattttcttaaaaagctgttcaac----aatgaaa------------------------------cggg
i dasNov3.JH567436             C 0 C 0
s xenTro7.KB021649              27565058 259 + 215906545 AAGCTGCAACATCC-C-----------TTCTTTTAACTAAGGGCGTAATGTAAAGAGGCAAACAATTTTTC-----AGAGTATGACTTTGTTAGCTGAGAGAC-AGAATCCATATAATTGCATTTCCTTGCTTGTAAAGATT--AAAAACAGGAGGGGGCATTA-GAAAAAAACGA----TGCTGCCTCTCTTCCCAAACATATTTCAACCAGTGTGAACAACGAAGAAGAAAATGAAAACATTTTATTATAAAGGTATTTGTT----GGACAAAT-GGCTAATA--------------------GCGG
i xenTro7.KB021649             n 0 n 0
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e musFur1.GL896914              13609668   0 -  19722643 C
e danRer10.chr17                18108214 2164 -  53345113 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e odoRosDiv1.KB229025            3032947   0 +   4816872 C
e canFam3.chr17                 57837718   0 -  64289059 C
e felCat8.chrA3                134104665  36 + 140925898 I
e ornAna1.chr4                  58039176   0 -  58987262 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382   0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820   0 -   5414369 I
e araMac1.AOUJ01470298               637   0 -       895 I
e astMex1.KB882153               1887684 6275 +   2696342 I
e oryLat2.chr22                 17713695 1652 -  28810691 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e ficAlb2.chr2                 148476154 152 + 157563209 I
e anoCar2.chr1                 148577473   4 + 263920458 I
e pseHum1.KB221189              55280129 197 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214   0 -  25666195 I
e allMis1.JH731579                503450   0 -    636928 I
e falPer1.KB390952               2753956   0 -  18327016 I
e falChe1.KB397350               1707310   0 -   3649919 I
e macEug2.GL109592                 97242 6566 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e sarHar1.chr1_GL834688_random    516523 5985 +   3395230 I
e melGal1.chr22                 13571932   0 -  14786829 I
e anaPla1.KB742696               1244545 9705 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1969272 647 +   4979691 I
e chrPic2.chrUn_KK088237v1       5677291 6413 -  22294289 I
e pelSin1.JH211373               2650239   0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530522886 8299 + 748055161 I
e taeGut2.chr3                  13879943 9148 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=11481.000000
s hg38.chr8_KI270814v1_alt         83572 4 +    141812 TTCC
s ponAbe2.chr8                  59053099 4 + 153482349 TTCT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48131397 4 + 100215132 TTCC
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99338992 4 + 108792865 ttcc
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24005115 4 +  27210278 TTCC
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21186428 4 -  23169006 TTTC
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19209752 4 -  22931326 gcca
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2804143 4 -   6207710 gcca
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10839746 4 +  17242564 TCCA
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84033697 4 +  91571448 TTCG
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6807231 4 -  14545593 TTCG
i cerSim1.JH767782             C 0 C 0
s pteAle1.KB030580              19410481 4 -  23789964 TTCG
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27617456 4 -  46401353 ttcc
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9964810 4 +  24341844 ttcc
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1031195 4 -   2788317 ttgc
i dasNov3.JH567436             C 0 C 0
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e musFur1.GL896914              13609668 0 -  19722643 C
e danRer10.chr17                18108214 2164 -  53345113 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e odoRosDiv1.KB229025            3032947 0 +   4816872 C
e canFam3.chr17                 57837718 0 -  64289059 C
e felCat8.chrA3                134104665 36 + 140925898 I
e xenTro7.KB021649              27565317 0 + 215906545 I
e ornAna1.chr4                  58039176 0 -  58987262 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e astMex1.KB882153               1887684 6275 +   2696342 I
e oryLat2.chr22                 17713695 1652 -  28810691 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e ficAlb2.chr2                 148476154 152 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221189              55280129 197 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH731579                503450 0 -    636928 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                 97242 6566 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e sarHar1.chr1_GL834688_random    516523 5985 +   3395230 I
e melGal1.chr22                 13571932 0 -  14786829 I
e anaPla1.KB742696               1244545 9705 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1969272 647 +   4979691 I
e chrPic2.chrUn_KK088237v1       5677291 6413 -  22294289 I
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530522886 8299 + 748055161 I
e taeGut2.chr3                  13879943 9148 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=916076.000000
s hg38.chr8_KI270814v1_alt         83576 411 +    141812 AGAGGGCTCCCTGTCA--TTGCGGGGTG----GAGGAC----TAGAGTGTTT-------------------------------------------AAGAAGAGGCAAGAAGTGTAATTTTT-----TTGT-TCTTTAGTGTGGAGCACAGTG----TGGGACA---CAAAGTAGGTTCTCAACAATTTGAAAGAATGAGTGGGTGAAA-A---TATAAATGCTCAGAAGATATAA-AAACTCAGAAGACACTTTGAGAGG---GATATTG-TTTAATCACTTTATGCATCTGAGAGGG-------AGCATGACTAGAGGATTTCTG-----AGGTCCCTGGGACTGGAATTATATAACTCCAAGG---CAC-TG-CAACACCTCAAAGG---CAAGACACAGTTCA---GACA-----GATcatttctcttaataat------------caggca----tgggactattgcccaggaatt------ttaaag------acatcttaaa-----ccta-----gttattaca----tatcacaaaacctcttggaat
s ponAbe2.chr8                  59053103 406 + 153482349 AGAGGGCTGCCTGTCA--TTGAGGGGAG----GAGGAC----TGGAGTGTTT-------------------------------------------AAGAAGAGGCAAGAAGTGTAATTTTT-----TTGT-TCTTTAGTGTGGAGCACAGTG----TGGGACA---CACAGTAGGCTCTCAACAATTTGAAAGA----GTGGGTGAAA-A---TATAAATGCTCAGAAGATATAA-AAACTCAGAAGACACTTTGGGAGG---GATATTG-TTTAATGACTTTATGCATCTGAGAGGG-------AGCATGACTAGAGGATTTCTG-----AGGTCC-TGGGACTGGAATTATATAACTCCAAGG---CAC-TG-CAACACCTCAAAGG---CAAGACACGGTTCA---GACA-----GATCATTTCTCTTAATAAT------------CAGGCA----TGGGACTATTGCCCAGGAATT------TTAAAG------ACACCTTAAA-----CCTA-----GTTATTACA----TATCACAAAACCTCTTGGAAT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48131401 411 + 100215132 AGAGGGCTCCTTGTCA--TTGCAGGGAG----GAGGAC----TAGAGTGTTT-------------------------------------------AAGAAGAggcaagaagtgtaattttt-----ttgt-tctttactgtggagcacagtg----taggaca---cacagtaggttctcaacaatttgaacgagtgagtGGGTGAAA-A---TATAAACACTCAGAAGATATAA-AAACTCAgaagacactttgggagg---gatattg-tttaatgactttatgcatctgagaggg-------agcatgactagaggatttctg-----aggtccctgggactggaattatataactccaAGG---CAC-TG-CAACACCTCAAAGG---CAAGACACAGTTCA---GACA-----GATcatttctcttaataat------------caggca----tgggactattgcccaggaatt------taaaag------acatcttaaa-----ccta-----gttattaca----catcacaaaacctcttggaat
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99338996 392 + 108792865 agagggctccccatca--ttagggCGAG----GAGGAC----TAGAGTGTTT-------------------------------------------CAGAAGAGGCAAGAAATGTAATTTTT-----CTGT-------GTGCCCTGCACAGTACCCACAGGACA---CAGAGTAGGTTCTCAATGATCTGAAGGAACATATGAGTGAA--------------------------AA-ACAAACAGGAGACCTTCTGGGAGGGATGATGTTG-TTTAATGAGTTTATGCATCTGGGAGGG-------AGTGTAACTGGAGG-------------GGCCC-TGGGACTAGAATTATACAACCCCAAGGTGTCCC-TGACACCTCTTCACAGG---CAAGACACAGCCCA---GACA---CTGGTCATTTCTCTTAATAAT------------CAGGTA----TAGGACTACTGCCCAGGAATT------TTAAAG------ATATCTAAAA-----CCTACTATGATTGTTACA----TACCATAAAACCTCTTGAGAT
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24005119 393 +  27210278 AGAGGGCTCCCCATCA--TTAGGGCGAG----GAGGAC----TAGAGTGTTT-------------------------------------------CAGAAGAGGCAAGAAATGT-ATTTCT-----CTGT-------GTGTCCTGCACAGTGCACACAGGACA---CACAGTAGGTTCTCAATGATGTGAAGGAAC--ACGAGTGAAA-A---------------------GTAA-ACACACAGGAGACCCTCTGGGAGGGATGATGTTG-TTTAATGAGTTTAAGCATCTGGGAGGG-------AGTGTAATTGGAGG-------------GGCCC-TGGGACTAGAATTATACAACCCCAAGGTGTCCC-TGACACCTCTTCGCAGG---CAAGACACAGCCCA---GACA---CTGGTCatttctcttaataat------------caggta----tgggaccactgcccaggaatt------ttaaag------atatctaaaa-----cctattattattgttaca----taccacaaaacctcttgagat
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21186432 364 -  23169006 AGAAAG-TCTCCATCA--CTGGGGGCAG------GGGC----TGGAACGTCC-------------------------------------------AACGGGAGGCAGGAAGTGTAATTTCT-----CTGT-TTCTT-----------TAGCT----TGGAGCA---CACAGTAG---CTAAACAGTCTGAAGGA----GTGAGTGAGG-A----------------CAAATACAA-ACGATTAGCTGACCATTTGGGAGG---GACGTC--CCTGACGCATTCAAGCAGCCCA---GG-------AACGTGGTTGGAGA--GCCTG-----GTGTCCGGGGGGCTAGAATTACACAGCTCCAAGG----------CGACCC--------------AATGCCGTCCAAAGGACA---TTGGCCATTCCTCTTAATGAT------------CAGGCA----CAGGGCTACTGCCCAGGAATG------TTAAAG------ACCTCTTAAA-----CCTA-----GTTGTTTCATTCTTGCCGGGAGGCCCTGTGCTAT
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19209756 394 -  22931326 gcgg----ccccatca--cttgggaagg----------------gggtattt-------------------------------------------aagaagaggcaagaAATCTAGTTTCTGATCCTTGT-TTTGTATCTTGAAGCACAGCA----CTGGGCA----ACAGTAGATGCTCCACAACTTGAACGGGTGGGTGAGTGAGA-A---CAT------------------T-AAAAAtaggtgaccatttggtggg---gatgttg-ttaaatggcttcatgcacagagggggatgtggggagtgtgactggagg-cccctg-----aggtccTGGGGA---CAACCACACAACTCCAAGGCTCCCC-CGCCACCCCCTCAAAGGGATCAAGACACGG-CCA---GACA---TCGGTCACT-CTCATAATGCT------------CAGGTA----TAGGACTCCAGGCCAGGAATT------TTAAAT------ATGTCTTAAA-----CCTG-----TCTGCTACA----TGTC-CAGGGCCTCTCCGGAC
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2804147 395 -   6207710 gcgt----ccccatca--ctcggggagg----------------gggtattt-------------------------------------------aagaagaggcaagaAATCTAGTTTCTGATCCTTGT-TTTTTATCTTGAAGCACAGCA----CTGGGCA----ACAGTAGATGTTCCACAACTTGAACGGGTGGGTGAGTGAGA-A---CAT------------------TAAAAAAAAggtgaccatttggtggg---gatgttg-ttaaatggcttcatgcaccgaggaggaggtggggagtgtgactggagg-cccctg-----agatccTGGGGA---CAACCACACAACTCCAAGGCTCCCC-CGCCACCCCCTCAGAGGGATCAAGACACGG-CCA---GACA---TCGGTCACT-CTCATAATGCT------------CAGGTA----TAGGACTCCAGGCCAGGAATT------TTAAAT------ATGTCTTAAA-----CCTG-----TCTGCTCCA----TATC-CAGGGCCTCTCCGGAC
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10839750 379 +  17242564 GAGG----CCCCATCA--TTTGGGGAGG----------------GGGTATTT-------------------------------------------AGGAAGAGGCGAGAAATGTAGTTTCTAATCCTTGT-TCTTTATCTTGAAGCACAGCA----CTGGGCA---CACAGCAGACCCGCAGTGACTTGACTGGGTGAGT---TAAGA-A---CGT------------------A-AAGAAAAGGTGACCGTTTGGTGAG---GGTGTTG-TTAAAGGGGCTCGTGCACCAGGGAGGC-------AGCGTGACTGGAG--------------GGCCCCGGGGA---CAATCACACAACTCCAAGCCTCCCC-TGACGCCACCGCAAAGGGATCAAGACGTGGCCCA---GATG---TCGGTCACT-CTTGTAATGGT------------CAGGTA----TGGAACGACAGGCCAGGAACT------GAAAAG------ATGTCTTAAA-----GCTG-----TTTGTTGCA----TATCACAGGGCCTCTCAGGAA
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84033701 366 +  91571448 AGTG----TCCCATCA--TTTGGGGAGG----------------TGGTACTT-------------------------------------------AAGAAGAGGCAAGAAATATCGTTTCTAATTCTTGT-TTTTTACCTTGAGGCACAGCA----TTGGGCA---GACAGTAGGTACTCGACAAT---------TGAATGAGTAAGA-A---TAT------------------A-ATAAACACACCACCATAATGTAGG---GATATTT-TTAGATGGACCCATGCA-CAGGGGGGC-----------------------TC--G-----AGGTTCCTGGGACTACAATTACACAGCTCCAAGGCTCCCCATGACACCATCTCAGAGGGATCAAGACACAGGCCA---GACA---TCGGTCATA-CCCATAATAAT------------CAAGTA----TGGAACAATTGTACAGGAATT------TCAAAG------ATGTCT-AAA-----GCTG-----TTTGTTACG----TATCATATGGCCTCTTGGGAT
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6807235 368 -  14545593 AGTG----TCCCATCA--TTTGGGGAGG----------------GGGTATTT-------------------------------------------AAGAAGAGGCAAGAAATATCATTTCTAATTCTTG--TTTTTATCTTGAGGCACAGCG----TTGGGCA---CACAGTAGGTACTTGACGAA---------TGAATCAATGAGG-G---TATA---------AGAATATAA-ATAAACACACGACCATCTGGTAGG---GATGTTG-TTGAATGGATTAATGCACCAGAAGGGC-----------------------CCCTG-----AGGTCCCTGGGA-TACAATTAGTGAACTCCAAGGCTCCCCCTGACACCACTTCAGAGGGATCAAGACACAGTCCA---GACG---TCGGTCATC-CTAGTAATAAT------------CAGGT------------ATTGCCCAGGAATT------TCAAAG------ACGTCT-ACA-----CCTG-----TTTATTACA----TATCACAAGGcctcttgggat
i cerSim1.JH767782             C 0 C 0
s pteAle1.KB030580              19410485 362 -  23789964 AGTG--CCCCCCACCA---TTGGGGAGG----------------GAGTATTT----------------------------------------------AAGGGGTAACAAATGTCGTTTCTGCCTCTTGA-TTTTCATGTTGAagcacagtg----ctgggca---cacagtaggtactcagCCCC---------TGAATGAGTAAGA-A---TAG-----------------AA-ATAAACAGATGCCTGTTTGGTGGG---GACGTTGTTTAAATTGACTCATACGCCAGGGGGGG-----------------------CCCGT-----AGGTCCCTGGGACTAT-GCGACGCCACCCCAGGGCTCCCCCTGACACCGCCTCAAAGGGAGCAGG--ACAGTCCA---GA-------GGTCATT-CTTGTAAGAAT------------CAGGA-----TAGAACCACTGCCCAGGAATT------TCAAAA------ATGCCTAAAA-----CCTG-----TTTGTTACG----TGTCACAAGGcctcttgggat
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27617460 346 -  46401353 agagagctccccatca---tgggggca-----------------gggtgttt-------------------------------------------aagaagaagcaagaAATGTAGTTCCTAAGTTTTGTTTCTTTAGCTTGGAGCACAGTG----CTGGGCA---AAGAATAGG---------------ATGAGTACATGAGTAAATAA---TAT-----------------AA-GTAAATAACTGACCATTTGATGGA---GATGTTG-GTTAATGAA--TATGCATC---------------AATGTGACTGGAGGGCCTGTG-----AGATCCTGGGGACTCTAATTATACAACTCCAGGGTTCCCCCTGGTACCACCCCAAAGGGACTTA---------------ACA---TTGGtaatttctcttaataat------------caggta----tggaac----------------------taaag------atgtcttaaa-----c--a-----tttgttaca----tatcataaagcctcttgggac
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9964814 383 +  24341844 agagagttccctatca---tgggggcg-----------------gggtgttt-------------------------------------------aagaagaagcaagaAATGTAGTTTCTAAGCTTtgtttctttagcttggagcacagcg----ctgggca---cagagtaggtactcaacaaTCTGAATGAGTACGTGAGTAAATAA---TAT-----------------AA-ATAAACAACtgactgtttcatggg---gatgttg-gtaaatgaactcatgcatcagggatga-------aatgggactggagggcctgtg-----agatcctggggactgtaattatacaactctgaggttcCCCCTGGTACCACTTCGAAGGGACTAAGACATGGTCCA---GACA---TTGGTAATTTCTCTTAATAAT------------CAGGTA----TGGAAA----------------------TAAAG------ATGTCTTCAA-----C--A-----TTTGTTACA----TATCATAAAGCCTCTTGGGAT
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1031199 424 -   2788317 agagagttccccatta--gtgagggaat----------------gggtgtttaagaaatggcaagaGGGGCCTGGATTTAAGAAAAAAAATTAAAAAGAAGAGGCAAGAAATGTAGTTTTTAATCTTTGTTTCTCTAGCTTGGGGCACAG---------------------TAGGTATGCAGCATTCTGAACAAATGAGTGAATAAGT-A---TAT-----------------AA-ATAAACAgatgaccatttggtaag---aatgt----taaaagaattcatgcctg--agagga-------catgtgactagagggtccgtg-----gggtccctGGGACTATAATTACATAACTCCAAGATtccccc-gactccacctctaagggatcaagacatagtcca---gaca----cgggaatttctcttcataat------------cagcta----tggaacaactgcccaggaaat------ttaaag------acatcttgag-----ccta-----tttgttaca----tcttacaagacctcttgggat
i dasNov3.JH567436             C 0 C 0
s xenTro7.KB021649               9023644 440 + 215906545 ------agtagtatcaaagtagaggtggtaacggaaaccatatggatcagtt-------------------------------------------agctggacataggaaacattatgcaaagaaaatat-taaagggcataggacagagcc----ttaaaaaaacaacaacaggaaACCCATGACACAATTGTTCATGAAAGCCAAG-AGACTGT------------------A-AAGACTTGAGGAGGATTTGGTGAT--CAACAGTG-CCAAAACTGCTGAGACATCTGAGAGTC-------TTAATAAGGGAAGTGGTTTTGTAaatagaatacatagaatagaa--ataggaactagaGATGTTAC-AAACAAC---------------AAACAAACTTGT---GGCATTTTTGTTCACTTCTACATATACTGTATATGTCTGCCAGGAAAGATTGCAAATACCACATAGAAATTAACAAATAAAAACTTGGCACATCTTAAATCAGGCCTG-----GTCAGTGTG----TGTCACTCTGCCACTAACT--
i xenTro7.KB021649             n 0 C 0
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e musFur1.GL896914              13609668   0 -  19722643 C
e danRer10.chr17                18108214 2164 -  53345113 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e odoRosDiv1.KB229025            3032947   0 +   4816872 C
e canFam3.chr17                 57837718   0 -  64289059 C
e felCat8.chrA3                134104665  36 + 140925898 I
e ornAna1.chr4                  58039176   0 -  58987262 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382   0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820   0 -   5414369 I
e araMac1.AOUJ01470298               637   0 -       895 I
e astMex1.KB882153               1887684 6275 +   2696342 I
e oryLat2.chr22                 17713695 1652 -  28810691 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e ficAlb2.chr2                 148476154 152 + 157563209 I
e anoCar2.chr1                 148577473   4 + 263920458 I
e pseHum1.KB221189              55280129 197 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214   0 -  25666195 I
e allMis1.JH731579                503450   0 -    636928 I
e falPer1.KB390952               2753956   0 -  18327016 I
e falChe1.KB397350               1707310   0 -   3649919 I
e macEug2.GL109592                 97242 6566 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e sarHar1.chr1_GL834688_random    516523 5985 +   3395230 I
e melGal1.chr22                 13571932   0 -  14786829 I
e anaPla1.KB742696               1244545 9705 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1969272 647 +   4979691 I
e chrPic2.chrUn_KK088237v1       5677291 6413 -  22294289 I
e pelSin1.JH211373               2650239   0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530522886 8299 + 748055161 I
e taeGut2.chr3                  13879943 9148 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=10424.000000
s hg38.chr8_KI270814v1_alt         83987 1 +    141812 a
s ponAbe2.chr8                  59053509 1 + 153482349 A
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48131812 1 + 100215132 a
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99339388 1 + 108792865 A
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24005512 1 +  27210278 a
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21186796 1 -  23169006 G
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19210150 1 -  22931326 A
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2804542 1 -   6207710 A
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10840129 1 +  17242564 A
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84034067 1 +  91571448 A
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6807603 1 -  14545593 a
i cerSim1.JH767782             C 0 C 0
s canFam3.chr17                 57837718 1 -  64289059 A
i canFam3.chr17                C 0 C 0
s pteAle1.KB030580              19410847 1 -  23789964 a
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27617806 1 -  46401353 a
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9965197 1 +  24341844 A
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1031623 1 -   2788317 a
i dasNov3.JH567436             C 0 C 0
s xenTro7.KB021649               9024084 1 + 215906545 A
i xenTro7.KB021649             C 0 C 0
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e musFur1.GL896914              13609668 0 -  19722643 C
e danRer10.chr17                18108214 2164 -  53345113 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e odoRosDiv1.KB229025            3032947 0 +   4816872 C
e felCat8.chrA3                134104665 36 + 140925898 I
e ornAna1.chr4                  58039176 0 -  58987262 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e astMex1.KB882153               1887684 6275 +   2696342 I
e oryLat2.chr22                 17713695 1652 -  28810691 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e ficAlb2.chr2                 148476154 152 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221189              55280129 197 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH731579                503450 0 -    636928 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                 97242 6566 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e sarHar1.chr1_GL834688_random    516523 5985 +   3395230 I
e melGal1.chr22                 13571932 0 -  14786829 I
e anaPla1.KB742696               1244545 9705 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1969272 647 +   4979691 I
e chrPic2.chrUn_KK088237v1       5677291 6413 -  22294289 I
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530522886 8299 + 748055161 I
e taeGut2.chr3                  13879943 9148 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=31366.000000
s hg38.chr8_KI270814v1_alt         83988 6 +    141812 aatgag
s ponAbe2.chr8                  59053510 6 + 153482349 AACAAA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48131813 6 + 100215132 aatgaa
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99339389 6 + 108792865 AATGAT
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24005513 6 +  27210278 aatgaT
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21186797 2 -  23169006 TA----
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19210151 6 -  22931326 AATCAA
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2804543 6 -   6207710 AATCAA
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10840130 6 +  17242564 AATCAA
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84034068 6 +  91571448 AATCAA
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6807604 6 -  14545593 aatcaa
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134104701 6 + 140925898 AACAAC
i felCat8.chrA3                I 36 C 0
s canFam3.chr17                 57837719 6 -  64289059 AATCAA
i canFam3.chr17                C 0 C 0
s odoRosDiv1.KB229025            3032947 6 +   4816872 AACAAA
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19410848 6 -  23789964 aatcaa
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27617807 6 -  46401353 aatgaa
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9965198 6 +  24341844 AATGAA
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1031624 6 -   2788317 aacaaa
i dasNov3.JH567436             C 0 C 0
s xenTro7.KB021649               9024085 6 + 215906545 AATAGC
i xenTro7.KB021649             C 0 C 0
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e musFur1.GL896914              13609668 0 -  19722643 C
e danRer10.chr17                18108214 2164 -  53345113 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e ornAna1.chr4                  58039176 0 -  58987262 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e astMex1.KB882153               1887684 6275 +   2696342 I
e oryLat2.chr22                 17713695 1652 -  28810691 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e ficAlb2.chr2                 148476154 152 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221189              55280129 197 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH731579                503450 0 -    636928 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                 97242 6566 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e sarHar1.chr1_GL834688_random    516523 5985 +   3395230 I
e melGal1.chr22                 13571932 0 -  14786829 I
e anaPla1.KB742696               1244545 9705 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1969272 647 +   4979691 I
e chrPic2.chrUn_KK088237v1       5677291 6413 -  22294289 I
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530522886 8299 + 748055161 I
e taeGut2.chr3                  13879943 9148 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=192737.000000
s hg38.chr8_KI270814v1_alt         83994 29 +    141812 --tttctc--acactaataggtaaataattatt
s ponAbe2.chr8                  59053516 29 + 153482349 --TTTCTC--ACATTAATAGGTAAATAATTATT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48131819 29 + 100215132 --tttctc--acattaataggtaaataattatt
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99339395 28 + 108792865 --TCTCCC--ACATTAATA-GTAAAGAATTACt
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24005519 28 +  27210278 --TCTCTC--ACATTAACA-GTAAAGAATTACt
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21186799 29 -  23169006 --TCTCCC--ACGCTAACAGGTAAAGAATTCCC
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19210157 27 -  22931326 --TATCAC--ATATTAATGGGT--AGAGTTACT
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2804549 29 -   6207710 --TATCACATATATTAATGGGC--AGAGTTact
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10840136 27 +  17242564 --TCTTAC--GTGTAAAGGGGT--AGAGCTAAt
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84034074 29 +  91571448 --TCTCAC--AGGTAAATAGATAAAGAGTTAAT
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6807610 29 -  14545593 --tctcac--atgtaaatgggtaaagagttaat
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134104707 29 + 140925898 --CCTCAC--ACGTAAATGGTTAAAGAGTTACT
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57837725 29 -  64289059 --CCTCGC--ATGTAAACGATTAAAGAGTTACT
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13609668 29 -  19722643 --TCTCGC--ACATAAATGGTGAAAGAGTCACT
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3032953 29 +   4816872 --TCTCAA--GCATAAATGGTGAAAGAGTTACT
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19410854 29 -  23789964 --tctcac--ctgtaaatgggtgaagagttact
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27617813 29 -  46401353 --tctcac--atattaatgggtaaaaaattact
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9965204 29 +  24341844 --TCTCAC--ACATTAATGGGTAAAAAATTact
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1031630 29 -   2788317 --tctcca--atgttagtgggcaaagaattaat
i dasNov3.JH567436             C 0 C 0
s xenTro7.KB021649               9024091 31 + 215906545 TTCATCAG--CCCCATAGAGTTAAGCAAATATT
i xenTro7.KB021649             C 0 n 0
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e danRer10.chr17                18108214 2164 -  53345113 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e ornAna1.chr4                  58039176  0 -  58987262 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e astMex1.KB882153               1887684 6275 +   2696342 I
e oryLat2.chr22                 17713695 1652 -  28810691 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e ficAlb2.chr2                 148476154 152 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280129 197 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH731579                503450  0 -    636928 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                 97242 6566 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e sarHar1.chr1_GL834688_random    516523 5985 +   3395230 I
e melGal1.chr22                 13571932  0 -  14786829 I
e anaPla1.KB742696               1244545 9705 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1969272 647 +   4979691 I
e chrPic2.chrUn_KK088237v1       5677291 6413 -  22294289 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530522886 8299 + 748055161 I
e taeGut2.chr3                  13879943 9148 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=1477363.000000
s hg38.chr8_KI270814v1_alt         84023 250 +    141812 t------att-tatcctataattgc-ttcaag-tttaaagagtg--ctcctccctc-ctcctaaattctgggattttgtgaggaattctTCCCCTGCCCTACCTATGCGTGTTTCAATTTTTCAGAATTTGATGTTATTCTCATTTCAAGCCTTTTCCATTCAGAAACAGAGGACTCTC----TCAGGCAGTCTTCTTCAGAATCCCC-TTTCTGCCATTGGTTTAGT-CACACTCAGAAAAGTTTGCTCTCAGGCAC-GGAGACAGGC
s ponAbe2.chr8                  59053545 257 + 153482349 TCCTTT-ATT-TATCCTATAATTGC-TTCAAG-TTTAAAGAGTGTGCTGCTCCCTC-CTCCTAAATTCTGGTATTTTGTGAGGAATTCTTCCCCTGCCCTACCTATATGTGTTTCAGTTTTTCAGAATTTGATGTTATTCTCATTTCAAACCTTTTCCTTTCAGAAACAGAGGACTCTC----TCAGGCAGTCTTCTTCAGAATCCCC-TTTCTGCTATTGGTTTAGT-CACACTCAGAAAAATTTCCTCTCAGGCAT-GGAGACAGGC
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48131848 255 + 100215132 tccttt-att-tatcctgtaattgc-ttcaag-tttaaagagtg--ctgctccctt-ctcctaaattctgggattttgtgaGGATTTCTTCCCCTGCCCTACCTAAGTGTGTTTCAATTTTTCAGAATTTGATGTTATTCTCATTTCAAACCTTTTCCTTTCAGAAACAGAGGACTCTC----TCAGGCAGTCTTCTTTAGAATCCCC-TTTCTGCCATTGGTTTAGT-CACACTCAGAAAAATTTCCTCTCAGGCAC-GGAGACAGGC
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99339423 253 + 108792865 tccttt-att-tatcctacagttac-ttcaag-tttaaagggtg--ctgatccctc-ctcctaaattctagggttttgtgaggaattctgtccccatcctacccatgtgtgtcatggttttacagaatttgatattatcctccttccacacctcttcttttcagaACCAGATGACTCTC----AC--GTACTCTTCTTCAGAAAGCCC-TTTCTGCCCTTGGTCTAGT-CACACACAGGACCATTTCCTATCAGCCAC-GGAGAGGGGC
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24005547 255 +  27210278 tccttt-att-tatcctacaattac-ttcaag-tttaaagggtg--ctgatccctc-ctcctaaattctagggttttgtaaggaattctgtccccatcctacccacgtgtgtctcggttttacagaatttggtatcatcctcctttcaaacctcttctttccagaACCAGATGACTCTC----TCAGGTACGCTTCTTCAGAAAGCCC-TTTCTGCCCTTGGTCTAGT-CATGCACAGGACCATTTCCTATCAGCCAC-GGAGAGGGGC
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21186828 230 -  23169006 T---------------------------CAAGTTTTAAAGGGTT--ATCCTCCCTC-CTCCTAAACTCAGGGATTTCATGAGTTATTCTATCTATGT-GTATGTGTATGTGTGTTGCTATTACAGAATTCAATGTTGTTCTCCATTCAAACCTCCTGCTTTCAGAATAAGAGGACTCTC----TCAAGCAATCTTCTCCAGAAACACC-TTTCTGCCCTTGATCCAGT-CAAGCACAGAGGCATTTCCTCTctggcac-tgagg-gggc
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19210184 238 -  22931326 TTGTAATTtt-tatcccagaattacttttgagttttaaatggtg--ctgctctttgggtctcagattctgggattttgtgagtaattctgtccccactgtatttatgtgtgtcttgattttacagaacttgatctcattcc-ccttcaaaccttttcctttcagaaccaaaa-------------------tCCTCTTTAGAAACCCT-CTC--GT---TGGTTCAGA-AACACACAGAAGCATTTCCCCTAAGG-CCTTGAGGGTGGC
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2804578 242 -   6207710 ttttaatttt-tatcccagaattacttttgagttttaaatggtg--ctgctctttgggtctcagattctgggattttgtgagtaattctgtccccactgtatttatgtgtgtcttgattttacagaacttgatctctttcc-ccttcaaaccttttcctttcagaaccaaaA------------------CCCCTCTTTAGAAACCCT-CTC--GTTGCTGGTTCATA-AACGCACAGAAGCATTTCCCCTAAGG-CCTTGAGGGTGGC
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10840163 258 +  17242564 ttttta-att-tatcccagaattac-tctgagttttaaagggtg--ctgctcctttgttctccaattctgggattttgtgagtacctctgtcctcaccttatctacgtgtgtcttgattttacagaatttgatctcattcctctttcaaaccttttcctttcagaAGGAGAAGACTCTC----TCAGGCAACCCTCTTCAGAGACCCT-CTCCTGTCCCTGGTTCAGA-AGTGCACAGAAGCATTTCCTCTAAGGCCCTCGAGGGCAGC
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84034103 234 +  91571448 TCCTTT-ATC-TATCCTAGAATTAC-TTCAAGTTTTAAATGGTG--TTGCTCCCTCATTCTCAAATTCTGCGATTTTGTGAGTAATTCGGTCCCCATCCTACCTATGTGTGTCGTGATTTTACAGAATGTGATCTCA---------------TTCCCCTTTCAGAACCAGAAGG--CTC----TCGGGCAACCCTCTTCAGAAACCCC-TTCACA-CTCTGCTTC-----ATGCACAGAAGCATTTCCTCT-AGGCACTA-AGGGTGGC
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6807639 240 -  14545593 tccttt-att-tatcctagaattac-ttcaagttttaaagggcg--ctgctccctcattcttaaattctgcgattttatgagtaatcctGTCCCCATCCTATCTACATGTGTCTTGATTTTACAGAATTTGATCTCATCTTCCTTTCAAATCTTTCCCTTTCAGAACCAGATGACTCTC----TCAGACAGCCCTCTTCAGAAACCC--------------GTTC-----ATGCACAGACGCATCTCCTCTGAAGCACTT-AGGGTGGC
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134104736 235 + 140925898 TTTAAA-AAC-TATCTTAGAATTAT-TTCAA-----------------GCTCTCACATTCTCAAATCCTGGGATTTTGTGAGTAACTCTGTCCCCACTCCATGTACGTATGTCCTGAT---------TTTGATCTCATTCCCCTGTCAAACCTTTCCCTTTCAGAACCACAAGAGCCTC----TCAGGTAACCTGCTTCAAAATCCCCGTCCGTGCCCCTGGTTCAGA-AATGCCCAGAAGCGTCTCCTCTGAGAGGCCTGAGGGCGGC
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57837754 238 -  64289059 TTTAAA-ACT-TATCTGAGAATTAT-TTGAA-----------------GCTCTTGCACTGTCAAATTCTGGCATTTTGTGAGTAATTCTGTCCCTACTC----TATGTATGTCCTGATTTTACAGAATTTGATCTTGTTCCCCCTTCGAGCCTTTTCCTTTCGGAACCAGCAGAGTCTT----TCAGGCAATCCTCCTCAA-ACCCCC-CTTGTGGCCCAGGTTCAGT-TACACACAGAAGTATCCCGTCTGAGGCACTTGAGGGTGGT
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13609697 230 -  19722643 TTCAAA-AATGTATCCGAGAATTAC-TTGAT-----------------GCTTTCGCACTCCCAGGCTCTAGGATTTT----GTAATTCTGTCCCCGCTC----TACATATGTTCTCATTGTACAGAATTTGATCTCATTCTCCTTTCAAAGCTTCTCCTTTCAGAACGAG--GAGTCTC----TCTGACAACCCTCTTCAA----CCC-CTCACTCCCCAGGCCTGAT-AAAGTGCAGAAGCATCTCGTCAGGGGCACTCAAGGGCGGC
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3032982 224 +   4816872 TTTAAA-ACT-TACCTGAGAATTAT-TTGAA-----------------GCTTTCACACTCTCAAattctgggattttgtgagtaattctgtctccactc----tacgtatatcctgattttaccgaatttgatctcattctcctttcggAAC---------CAGAA------GACTCTC----TCCAGCAACCCTCTTCAAAACCCCC-TTTGTGCCCCCGGTTCGGT-AATACACAGAAGCGTCTCCTTGGAGGCACCCGAGGGTGGA
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19410883 232 -  23789964 tc-----att-ta-cctagaattgc-ttcgagtttcaaaagggg--ctactcccccaatctcaaattctaggattttgtgagtaattctGCCCCCGCCC----TACCTGTGTCTTGCTTTTACAGAATTTGATCTCG---------------TTCCCCTTTCAGAAGCAGGAGGCACTC----TCAG--AACCCCGCTCAGAAGCCCC-TTCCTGCCCTCGGCTCGGT-AACACACGGGGACACTTCCTCTGGGGTGCctgagcgtggc
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27617842 258 -  46401353 tccttt-att-tatcctagaattac-tccaagttgtaaagagtg--ctactccctcactctcaaattctgggattttgtgGGTGATTTCTTCCCTGTTCTACCTATGTGCATCTAAATTTTACAGAATGTGATCTCATTCCCCCTTCAAACCTATTCTTTTCAGAACCAGAGGGCTCTC----GCAGGCAATCTTCTTCAGAAGCCCC-TTTATGCCCTTGGTCCAGTAAATGCACAGAATCATTTCATTT-AGGCACCTGAGggtgaa
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9965233 258 +  24341844 tccttt--tt-tatcctagaattac-tccaagttttaaagagtg--ctacttcttgactctaaaattctgggattttgtgagtaatttcttccctgtcctatctatgcgtatctaaattttacagaacatgatctcgttccctcttcaaactttttcttttcggaAACAGAGGACTCTC----GTAGGCAATCTTCTTCAGAAACCCG-TTTACGCCCTTGGTCCCGTAAATGGACAGAATCATTTCATTTAAGGCACTTGAGGGTGAT
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1031659 262 -   2788317 tccttt-att-gatcttataattac-tttaaattttaaaaggtg--ctgctcccttattctcaaattctgtgaTATTATGATTGTTTCTGTCCCCACCCTATCTGGATGTGTCTTGATTTTACAGAATTTGAGCTCATCCCCCTTTCACATCCTTTCCTTTCAGAACCAGAGGACTCTCTCAGGCAAGCAATCCTCTTGAAAAACCTC-TTTAGGTCCTTGGCCCAGT-AATGTCTGGTATCATTTCATCTAAGGCACTTGAGGGGCTC
i dasNov3.JH567436             C 0 C 0
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e danRer10.chr17                18108214 2164 -  53345113 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e xenTro7.KB021649               9024122   0 + 215906545 I
e ornAna1.chr4                  58039176   0 -  58987262 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382   0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820   0 -   5414369 I
e araMac1.AOUJ01470298               637   0 -       895 I
e astMex1.KB882153               1887684 6275 +   2696342 I
e oryLat2.chr22                 17713695 1652 -  28810691 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e ficAlb2.chr2                 148476154 152 + 157563209 I
e anoCar2.chr1                 148577473   4 + 263920458 I
e pseHum1.KB221189              55280129 197 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214   0 -  25666195 I
e allMis1.JH731579                503450   0 -    636928 I
e falPer1.KB390952               2753956   0 -  18327016 I
e falChe1.KB397350               1707310   0 -   3649919 I
e macEug2.GL109592                 97242 6566 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e sarHar1.chr1_GL834688_random    516523 5985 +   3395230 I
e melGal1.chr22                 13571932   0 -  14786829 I
e anaPla1.KB742696               1244545 9705 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1969272 647 +   4979691 I
e chrPic2.chrUn_KK088237v1       5677291 6413 -  22294289 I
e pelSin1.JH211373               2650239   0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530522886 8299 + 748055161 I
e taeGut2.chr3                  13879943 9148 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=810289.000000
s hg38.chr8_KI270814v1_alt         84273 252 +    141812 AGCAA-GTGTGGCTAAAtggaagtcaggaaacccacttcctgac------tctggctcaattacac--t-----------tgctggttgaccagcagcaaaccactgagtcttggttttccatctgcaaagtaagaatgtgctgatcccttccc-atttatttcacC-------AAACTGGCACACATATCAAGGATGCTGACAGGC----CAGGAATAATGGA-TGGAGGCCT---CCTTGGGCTAAAGGGACCTGCAAGCTTCTCCAGTAGAACACTCTGCTTATC
s ponAbe2.chr8                  59053802 252 + 153482349 AGCAA-GTGTGGCTAAAtgaaagtcaggaaacccacttcctgac------tctgactcaattacac--t-----------tgctggttgaccagcagcaaaccactgagccttggttttccatctgcaaagtaagaatacgctgatcccttccc-atttatttcacC-------AAACTGGCACACGTATCAAGGATGCTGACAGGC----CAGGAATAATAGA-TGGATGCCT---CTTTGGGCTAAAGGGACCTGCAAGCTTCTCCAGTAGAACACTCTGCTTATA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48132103 251 + 100215132 AGCAA-CTATGGCTAAAtggaagtcaggaaacccacttcctgac------tctggctcaattacac--t-----------tgctagttgaccagcagcaaaccactgagtcttggttttccatctgcaaagtaagaatacgctgatcccttccc-atttatttcacC--------AACTGGCACACATATCAAGGATGCTGACAGGC----CAGGAATAATGGA-TGAAGGCCT---CCTTGGGCTAAAGGGACCTGCAAGCTTCTCCACTAGAACACTCTGCTTATA
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99339676 249 + 108792865 AGCAA-GGGCAGCTGAGTGAAGCT--GGAAATCTGCTTCCTGGC-------TTGGCTCGATTACTC--T-----------TACTGGCTGACCAGCAG-AAACCACTGACTCTTGGTTTTCCCTCTGCAAAGCAGGAATCTGCTGGTCCCTTCCC-ATTTATTTCACC-------CAACTGGCACATGGATAAAAGATGCTGATGGAC----CAGGGATCCCGCATTGGGGGCCTC--CCCCGGGCTGAACGGACCTATAGGGTTCTCTAGTCA-ACACTCTGCCTGTG
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24005802 248 +  27210278 AGCAA-GTGCAGCTGAGTGAAGTT--GGAAACCTGCTTCCTGGC-------CTGGCTCAACTACTC--T-----------TACTGGCTGACCAGCAG-AAACCACTGACTCTTGGTTTTCCCTCTGCAAAGCAGGAATCTGCTGGTCCCTTCCC-ATTTATTTCACC-------CAACTGGCACATGGATAAAGAATGCTGATGGAC----CAGGGATCTCGGGTTGGGGACCT---CCCTGGGCTGAACGGACCTGCAGGGTTCTCTAGTCG-ACACTCTGCCTGTG
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21187058 258 -  23169006 agcag-gtacagatgagtggatgtcaggaaatctgcttcctgga-------ttggctccattactcttt-----------tactgttcaaccagcagcaaaccactgggtctcagtttcctgtctgt-aagtaggcatgcgctaat-cctcccc-attta-tccactgagctgGTAACTGGTACCCAGGCAACAAATGCTAACAGGC----CAGGAGTACAGGC-TCGAGCCTCG--CTCTGTGCAGCACACGGCTCCACGGCACTCTAGCCTGACGCTCTGTGCAGC
i otoGar3.GL873541             C 0 I 85
s vicPac2.KB632437              19210422 245 -  22931326 AGCGA-CAGTGGCTGAATGAA-GCCAGCAGACCCATGGCCAGGC------CTTGGCTCAGCCAGTCTCT------------CACGGCTGACCAGCGGCAAA-----ACGCCAAGGTTTCCCACCTGTAACGCAGGAAC--GCGGACCCTTTCCTCATTTACTGCACT-------GAACT--GGCGCGGGTGCGGAACGCTAGCCGGC----CAGGGGCAGCAAGTCTGGAGCCT---CTTCGGGCTGAGCAGACCTTCGAAGTATTCTGGGTTAACACTCTACCTATG
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2804820 245 -   6207710 AGCAA-CAGTGGCTGAATGAA-GCCAGCAGACCCATGGCCAGCC------CTTGGCTCAGCCTGTCTCT------------TACGGCTGACCAGCGGCAAA-----ATGCCAAGGTTTCCCACCTGTAACGCAGGAAC--GTGGACCCTTTCCTCATTTACTGCACT-------GAACT--GACACAGGTGAAGGATGCTAGCCAGC----CAGGGGCAGCAAGTCTGGAGCCT---CTCCGGGCTGAGCAGACCTTCGAAGTATTCTGGGTTAACACTCTACCTATG
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10840421 250 +  17242564 AGCGA-CGGCAGCTCAATGAA-GTCGGCAAATCCATGTCCTGCC------CTTGGCTCAACTAGCTTCT------------CGTGGGTGACCAGCAGCAAG-TACCAAGCCCAGGTTTCCCACCTGTAAAG-AGGAAC--GTGGACCCTTTCCTTATTCACTGCACT-------GAACCCACACACAGATGCAGGATGCTAATGAGC----CCGGGGTAGTGAGTCTGGAGCCT---CTCTGGGTTGAGCCGACCTTCAAAGCATTCTGGTTTAATACTGTATCTGTG
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84034337 232 +  91571448 AGCGA-GAGCAGCTGAAT-GAAGTCA---AATGTACCTCGTAGC------CCTGGCTCAATGGC---------------------------CAGTAGCAAACCActgagtcttggtttcccatctgtgaagcaggaat--ggtgatccttcccctattta-tgcact-------gaattggtatgCACATGAAGGATGCTAAAGGGC----CAAGGATAGCAAGATGGGAGCCT---CTTGGGT-TGAGCTGATCCTCAAGGTATTCTAGTTTAACACTCTGCCTGTG
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6807879 227 -  14545593 AGTGA-GAGCAGCTGAATGGAAGTCAGC-AAACCACTTCCTGGC------CCTGGCTCAAGGAC---------------------------CAGCGGCAAACCACCGACTCTTGGTTTCCCGTCGGTAAAGCAGGAAT--GGTGATCCCTTCCCCATTTATTACACT-------GAATTGGTATGCACATGAAGGATGCTCAAGGGC----CAGGGATAGCAAGATGGGAGTCT---CTCGGGT-TGAGCCGACC---------TTCTAGCTTAACACTCCGCCTGTG
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134104971 216 + 140925898 CCCAA-CAGCAGCTGAATGGA--------AATCCATCT-CTGGC------CATGACCCGATGAC-----------------TCTGGTGGACTGGCAACAAACCAGCGAGTTTTGGCTTCCTATCTACACAGGAGGCCT--GGTGAGCCTCTCCCTGTCGAGTGCACA-------GCACTGGTCAGCGGAGGAAGGAGGCTCAGGG------CAGGGACAGCAAGCCTGGAGCTT---CTCCGGGATGAACAGAGCTTC-ACGTGCTCT--------------------
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57837992 226 -  64289059 GGCAA-CTGCAGCTGGATGGA--------AAGTCACCCACTGGC------CCTGGCTCAGTGACCTTCT-----------CGCTAGCTGACCAGCAGCAAACCACCAAGTCCTGGCCTCCTGTCTATAAAGCAGGAGT--GGCGATCCTTTCTCCATCGAGTGTCCT-------GTACTGGTATGCAGAGGACGG-TGCTAAGG-------------------GCCAGAAACTT---CTCTGGCTTGAACAGACCTTCAAGGCCATCTACCTCAACACTC----TGTG
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13609927 220 -  19722643 AG----AAGCGGCTGAACAGG--------AAGCCACCTCCTGGC------ACTGGCTCAACGACCCTCT-----------CGCTAGCTGAGCAGCAGCAAACCACTAAGTCCTGGCGT-CTGTCTATAAAGCAGGAAT--GGTGGTCCTTTCCCCGTCGAGGGCACT-------GC-TCCATATCCAGAGGCAGGATGCTAAGG-------------------GCCAGGAGCTT---CTCTGGCTTGAACAGACCTTC-AGACACTCTAACCCTCT-CTC----TGTG
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3033206 211 +   4816872 AGTAA-AAGTAGCTGGATGGA--------AAGCCACCTCCTGGC------TCTGGCTCAATGACCCTCT------------GCCAGCTGACCAGCAGCAAAGCACCGAGTCTTGGCTTCCTGTCTACAAA-------------GATCCTTTCCCTGTCAAGTGCACT-------GCATGGGTGTGCAGAGGAAGGACACTAAGG-------------------GCCAGCAGCTT---CTCTGGC-TGGACAGACCTTCAAGGCACTCTAACACTAT-CTC------TG
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19411115 218 -  23789964 ggcga-gagcagctaagtgaaagtccacagagccacctcctggc------tgtggcccgactat---------------------------cggcagcaagccaccgagtctgggtttactatctgtaaagtgcggat--agtggtcctttccctctttattagact-------gaggtgggatgcggacgaaGGATGCTAAAGGAC----CAGGCATGGCAAGTTGGGAGC----------------------CTTCAAGGTATTCTAG-TTAACACTCGGTCTGCG
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27618100 248 -  46401353 -gtga-gaacagctgaatggaaaacagcgactccatttcctagc------cctagctcaattattctct----------taactgtttgacccgcagcaaaccaccgcatcttggtttcccatctgcaaagctgggat--ggtgatcctt--ct-atatattttgcc-------caattgttatatagataaaGGATGGAAAAGGTC----TAGAGGCAGTAGGTTTAGAGCCT---CTCTGGGCTG-ACAGGCCTTCCAAGTATTCTAGTTTAACA--CTATCTGTG
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9965491 244 +  24341844 -GTga-gaacagctgaagggaaatcaggaaacccacttcctagc------cctacctcaattattctct--------------tgtttgaccagcagcaaaccacctcgtcttggtttcccatttgtaaagctgggat--ggtgatcctt--ct-atatatttcact-------cagttgttacacagataaaGGATGGAAAAGGTC----TAGACATAGTAGGTTTGGAGCCT---CTCTGGGCTG-ACAGACCTTGAAGGTATTCTAGTTTAACA--CCATCTGTG
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1031921 246 -   2788317 -ATGA-GAGCTGCTAAAGAGAAGTAAGGAAATCCATTTCCTGGCTCCTCACCCCGCTCAAATACTCTTA-------------CTGTTTTGCTAGCAGCAAATCACAAagtcttggtttcccatctgt-aagtaggaat--agtgatcctttcct-atacatctcact-------gaattgttatacagataaaaGATGCTAAAGAAC----CAGAGATGCTAGGTTTAGAGCCT---TTCTGGGTTGAACAGACC---------TTCTAGTTTAACATTCTACCTCTG
i dasNov3.JH567436             C 0 C 0
s xenTro7.KB021649              27751220 247 + 215906545 agcaatgtggatctgagccaaggacaggaag--------ctgac------tcttactaactgagcatgttcacttggtctgggtgtctgtgcaggagtgaggcattatg--gggactttctttacacagctcagcgtt-ttttcatcctgtttggcttctgttcatc-------tgaacaggagaaatatg-gggagactaaagggcactattgagagaactgaatgtatgcctgcagcttgagattaactctttattagccttttcttctc----------------
i xenTro7.KB021649             n 0 C 0
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e danRer10.chr17                18108214 2164 -  53345113 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e ornAna1.chr4                  58039176   0 -  58987262 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382   0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820   0 -   5414369 I
e araMac1.AOUJ01470298               637   0 -       895 I
e astMex1.KB882153               1887684 6275 +   2696342 I
e oryLat2.chr22                 17713695 1652 -  28810691 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e ficAlb2.chr2                 148476154 152 + 157563209 I
e anoCar2.chr1                 148577473   4 + 263920458 I
e pseHum1.KB221189              55280129 197 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214   0 -  25666195 I
e allMis1.JH731579                503450   0 -    636928 I
e falPer1.KB390952               2753956   0 -  18327016 I
e falChe1.KB397350               1707310   0 -   3649919 I
e macEug2.GL109592                 97242 6566 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e sarHar1.chr1_GL834688_random    516523 5985 +   3395230 I
e melGal1.chr22                 13571932   0 -  14786829 I
e anaPla1.KB742696               1244545 9705 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1969272 647 +   4979691 I
e chrPic2.chrUn_KK088237v1       5677291 6413 -  22294289 I
e pelSin1.JH211373               2650239   0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530522886 8299 + 748055161 I
e taeGut2.chr3                  13879943 9148 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=122929.000000
s hg38.chr8_KI270814v1_alt         84525 26 +    141812 --CTTCCATA--TGAATGTACAGTATTAAT---
s ponAbe2.chr8                  59054054 26 + 153482349 --CTTCCATA--TGAATGTACAGTATTAAT---
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48132354 26 + 100215132 --CTTCCATA--TGAATGTACAGTATTAAT---
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99339925 26 + 108792865 --CTTCGGAA--TGAATGTACACCATCAAT---
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24006050 26 +  27210278 --CTTCGGAA--TGAATGTACACCATCAAT---
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19210667 26 -  22931326 --CTTATATA--CAAAGGTCGGCCCTTGGT---
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2805065 26 -   6207710 --CTTACATA--CAAATGTCGGCCTTTGTT---
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10840671 26 +  17242564 --CTGACATA--CGAATGTGTGCCATTAGT---
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84034569 26 +  91571448 --CTTATACA--TGAACATATGCCATCAGT---
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6808106 26 -  14545593 --CTTATATA--TGAATGTACGCCATCAGT---
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134105187 16 + 140925898 --------------AGTTTATTCCATTAGT---
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57838218 26 -  64289059 --ATTATAGG--TGAATGTATGCCATTAGT---
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13610147 26 -  19722643 --CTCATCCG--TGAGTACATGCCATGGGT---
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3033417 26 +   4816872 --CTTATATG--TGAATGTATACCATCAGT---
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19411333 26 -  23789964 --CTTCTACA--TAAATGTACGCCATTCGT---
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27618348 26 -  46401353 --CTTATATA--TAAATGTATACCACTAAG---
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9965735 26 +  24341844 --CTTATATA--TGAATGTATACCATTAAG---
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1032167 28 -   2788317 --CTTATATATTTAAATCTCTGCCATTAAT---
i dasNov3.JH567436             C 0 C 0
s xenTro7.KB021649              27751467 30 + 215906545 ctTTAAGATG--TTAATCTGT-CCACTAATACT
i xenTro7.KB021649             C 0 C 0
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e danRer10.chr17                18108214 2164 -  53345113 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e ornAna1.chr4                  58039176  0 -  58987262 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e astMex1.KB882153               1887684 6275 +   2696342 I
e oryLat2.chr22                 17713695 1652 -  28810691 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e ficAlb2.chr2                 148476154 152 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280129 197 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH731579                503450  0 -    636928 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                 97242 6566 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e sarHar1.chr1_GL834688_random    516523 5985 +   3395230 I
e melGal1.chr22                 13571932  0 -  14786829 I
e anaPla1.KB742696               1244545 9705 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1969272 647 +   4979691 I
e chrPic2.chrUn_KK088237v1       5677291 6413 -  22294289 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530522886 8299 + 748055161 I
e taeGut2.chr3                  13879943 9148 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21187316 85 -  23169006 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=11952.000000
s hg38.chr8_KI270814v1_alt         84551 6 +    141812 -G--AAACT
s ponAbe2.chr8                  59054080 6 + 153482349 -G--AAACT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48132380 6 + 100215132 -G--AAACT
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99339951 6 + 108792865 -G--AAACT
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24006076 6 +  27210278 -G--AAACT
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21187401 6 -  23169006 -G--GAATT
i otoGar3.GL873541             I 85 C 0
s vicPac2.KB632437              19210693 6 -  22931326 -G--GAACT
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2805091 6 -   6207710 -G--TAACT
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10840697 6 +  17242564 -G--AGACT
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84034595 6 +  91571448 -G--AAACT
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6808132 6 -  14545593 -G--AAACT
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134105203 5 + 140925898 -A--AAA-T
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57838244 7 -  64289059 -GAAAAA-T
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13610173 5 -  19722643 -G--CAG-T
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3033443 5 +   4816872 -G--AAA-T
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19411359 4 -  23789964 -G--AAA--
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27618374 6 -  46401353 -A--AAACA
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9965761 6 +  24341844 -G--AAACT
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1032195 6 -   2788317 -G--GAACT
i dasNov3.JH567436             C 0 C 0
s xenTro7.KB021649              27751497 6 + 215906545 AG--AATC-
i xenTro7.KB021649             C 0 I 55
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e danRer10.chr17                18108214 2164 -  53345113 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e ornAna1.chr4                  58039176 0 -  58987262 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e astMex1.KB882153               1887684 6275 +   2696342 I
e oryLat2.chr22                 17713695 1652 -  28810691 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e ficAlb2.chr2                 148476154 152 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221189              55280129 197 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH731579                503450 0 -    636928 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                 97242 6566 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e sarHar1.chr1_GL834688_random    516523 5985 +   3395230 I
e melGal1.chr22                 13571932 0 -  14786829 I
e anaPla1.KB742696               1244545 9705 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1969272 647 +   4979691 I
e chrPic2.chrUn_KK088237v1       5677291 6413 -  22294289 I
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530522886 8299 + 748055161 I
e taeGut2.chr3                  13879943 9148 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=173209.000000
s hg38.chr8_KI270814v1_alt         84557 60 +    141812 TCAGAACTTGGGGGCC-------AAGCAAACTCAGGTATGGAAGTTT--------------AA-GATTTCTAT--GGA-TGCAGT----
s ponAbe2.chr8                  59054086 60 + 153482349 CCAGAACTTGGGGGCC-------AAGCAAACTCAGGTATGGAAGTTT--------------AA-GATTTCTAT--GGA-TGCAGT----
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48132386 60 + 100215132 CCAGAACTCGGAGGCC-------AAGCAAACTCAGGTATGGAAATCC--------------AA-GATTTCTAT--GGA-TGCAGT----
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99339957 43 + 108792865 CCAGATCTCAGGTATG------------------------GAAATAT--------------AA-GATTGCCAC--GGA-CAGAAG----
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24006082 66 +  27210278 CCAGAACTCAGGTATGGAAATGTAAG-AACCTCAGGTATAGAAATGT--------------AA-GATTGTTAT--GGA-CAAAAG----
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21187407 31 -  23169006 CCAGAACTTGGGCTCC-------AAACAG----------------------------------------------GGA-TCAAGT----
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19210699 43 -  22931326 CCAGAATTTGG-----------------------AGTATGGGAACTT--------------AA-GATTCCCA---GGA-AGGGAT----
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2805097 43 -   6207710 CCAGAATTTGG-----------------------AGCATGGGAACTT--------------AA-GATTTCCG---GGA-AGGGAT----
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10840703 43 +  17242564 CTGGAATCTGG-----------------------AGTATGGGAACTT--------------AA-GATTTCCA---GGA-TGGGAT----
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84034601 60 +  91571448 CCAGAATTTGAGGATC------CAAGCAACTTCCAGGATGGAAAGTG--------------AA-GACTTCCA---GGA-TGGGAC----
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6808138 60 -  14545593 CCAGAATTTGAGGATC------CAAGCAACTTCCAGTATGGAAATTT--------------AA-TATTTCCA---GGA-TGGGAC----
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134105208 69 + 140925898 CCTGAATTTGGGGATC------CGAGCAACTTGGA-----GAAATTTTGGTGTAGAAATTTAA-GATTTCCA---GGA-AGGGAC----
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57838251 61 -  64289059 CCAGAATTTGGGGATC------CAAGCAACTTCGAGTATGGAAATGT--------------AA-GATTTCCA---GGAAGGGGAC----
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13610178 73 -  19722643 CTGGAATCTGGGGAGC------CAAACAAGTCTGAGCATGGAAATCTGGGCATGGAAATTCAG-GAATTTCC---AGA--GGGAC----
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3033448 74 +   4816872 CCGGATTTTGGGGATC------CAGGCAACTCTGAGTATGGAAATTTGGGTATGGAAATTTAA-GATGTCCA---GGA-GGGGAC----
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19411363 61 -  23789964 CCAGAATCTGGGGATC------CAAGCAACTTAGGGTACAGAAATTA--------------AA-GATGTCTAC--GGA-TGGAAC----
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27618380 59 -  46401353 CCAGAACTCAGCGATT------CAAGC--CTCCAGGTACGGAAATTT--------------AAGGATTTCCAT--GGA-TGGAC-----
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9965767 61 +  24341844 CCAGAACTCAGGGATC------CAAGCAACTTCAGGTATAGAAATTT--------------AA-GATTTCCAT--GGA-TGGAAG----
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1032201 67 -   2788317 CCAGAACTCTGGGATC------CAAGCAACTTCAAATACAGAAAGCT--------------AA-GATTTCGATGGGGG-TGGGGGTGAT
i dasNov3.JH567436             C 0 C 0
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e danRer10.chr17                18108214 2164 -  53345113 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e xenTro7.KB021649              27751503 55 + 215906545 I
e ornAna1.chr4                  58039176  0 -  58987262 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e astMex1.KB882153               1887684 6275 +   2696342 I
e oryLat2.chr22                 17713695 1652 -  28810691 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e ficAlb2.chr2                 148476154 152 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280129 197 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH731579                503450  0 -    636928 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                 97242 6566 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e sarHar1.chr1_GL834688_random    516523 5985 +   3395230 I
e melGal1.chr22                 13571932  0 -  14786829 I
e anaPla1.KB742696               1244545 9705 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1969272 647 +   4979691 I
e chrPic2.chrUn_KK088237v1       5677291 6413 -  22294289 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530522886 8299 + 748055161 I
e taeGut2.chr3                  13879943 9148 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=401832.000000
s hg38.chr8_KI270814v1_alt         84617 61 +    141812 AAGTATAAAAGG-------TTTGGTGTTCAGCAGTT-----TGAGTTCTGTGATCCTTCACC---ACT--GAAAAGAT
s ponAbe2.chr8                  59054146 61 + 153482349 AAGTATCAAATG-------TTTGGTGTTCAGCAGTT-----TGAGTTCTGTGATCCTTCACC---ACT--GAAAAGAT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48132446 61 + 100215132 AAGTATCAAAGG-------TTTGGTGTTCAGCAGTT-----TGAGTTCTGTGATCCTTCACT---ACT--GAAAAGAT
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99340000 61 + 108792865 AAGTAGCAAAGG-------TGTGGTGCTCACTGGTT-----TGGGTTTTGTGATTCTTCACC---ACT--GAAAAGAT
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24006148 61 +  27210278 AAGTATCAAAGG-------TGTGGTGCTCACTGGTT-----TGGGTTTTGTGATTCTTCACC---ACT--AAAAAGAT
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21187438 61 -  23169006 CAGTATCAAAGG-------TGTAGTGTTCACTGATT-----TGAGCTCTGTGCTCCTTCACC---CCT--GAAAAGAT
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19210742 63 -  22931326 GAGTCCCAGAGG-------TCTCGTGTTCCTTGGTT-----TGAGCCCTGTGATCCTTCACC---ACTCGGAACAGAT
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2805140 63 -   6207710 GAGTCCCAAAGG-------TCTCGTATTCCTTGGTT-----TGAGCTCTGTGATCCTTCACC---ACTTGGAACAGAT
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10840746 50 +  17242564 GAGTACCAAAGG-------TTTGGGATTCCTTG----------------GTGATCCTTCA-----GCTCTGAATAGAG
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84034661 51 +  91571448 AAGTATCAAAGG-------T----------TTGGTT-----TGAGCTTTGTGATTCTTCACC---ACT--GAATAGAT
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6808198 61 -  14545593 AAGTATCAAAAA-------TTTGGTATTCCTTGGTT-----TGAGCTTTGTGATCCTTCACC---ACT--GAATAGAC
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134105277 61 + 140925898 AAGTATCAGAGA-------TTTGGTATTCCCTGGTT-----TGAGCTTTGTGATCCTTCTCC---ACT--GAACAGAT
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57838312 50 -  64289059 AAATAGCAAAGG-------TTTGGTATTCCTTGGTT-----TGAGCTTCGTGATCCCTCACC----------------
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13610251 61 -  19722643 AGATATGAAAGG-------TTTGGTACTCCTGGGCT-----TGACCTTTGTGACCCTTCATCCA---C--GGCTTCAT
i musFur1.GL896914             C 0 I 87
s odoRosDiv1.KB229025            3033522 57 +   4816872 AAATATTAAAGG-------TTTGGTATTCCTGAG------------TTTGTGATCCTTCACCCAAGCT--GGTTTTAT
i odoRosDiv1.KB229025          C 0 I 178
s pteAle1.KB030580              19411424 61 -  23789964 AGGTGTCAGAGG-------TTTGGTGCTCCTTGGTC-----TCAGCTTTGTGATCCTTCAGC---ACT--GAACAGAC
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27618439 58 -  46401353 ---TATCGAAGA-------TTTGGTATTACTTAGTG-----TGAGCTTCGTGACCCTTCACC---ACT--GAAAAGAT
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9965828 61 +  24341844 GAGGATCAAAGG-------TTTAGTATTACTTGCTT-----TGAGCTTTGTGACCCTTTGCC---ACT--GAAAAGAT
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1032268 55 -   2788317 GAGTATCAAAGA-------TCTAATATTCCCTGGTA-----------TTGTTATTCTTCATC---ATT--TTAAAGAT
i dasNov3.JH567436             C 0 C 0
s xenTro7.KB021649              27751558 71 + 215906545 AACTTTCAAAAGGCTACAATATAGCACTTAAAAATTGCCAGTAAGATCAGTGGTCTGTAA-----AAG--AAAAGGAT
i xenTro7.KB021649             I 55 C 0
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e danRer10.chr17                18108214 2164 -  53345113 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e ornAna1.chr4                  58039176  0 -  58987262 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e astMex1.KB882153               1887684 6275 +   2696342 I
e oryLat2.chr22                 17713695 1652 -  28810691 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e ficAlb2.chr2                 148476154 152 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280129 197 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH731579                503450  0 -    636928 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                 97242 6566 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e sarHar1.chr1_GL834688_random    516523 5985 +   3395230 I
e melGal1.chr22                 13571932  0 -  14786829 I
e anaPla1.KB742696               1244545 9705 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1969272 647 +   4979691 I
e chrPic2.chrUn_KK088237v1       5677291 6413 -  22294289 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530522886 8299 + 748055161 I
e taeGut2.chr3                  13879943 9148 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-17897.000000
s hg38.chr8_KI270814v1_alt         84678 28 +    141812 --------ACCCAGGGCTAGTTT--------------------TTAAAAACTCAAA
s ponAbe2.chr8                  59054207 28 + 153482349 --------ACCCAGGGCTAGTTT--------------------TTAAAAACTCAGA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48132507 28 + 100215132 --------ACCCAGGGCTAGTTT--------------------TTAAAAACTCAAA
i nomLeu3.chr16                C 0 I 305
s calJac3.chr14                 99340061 34 + 108792865 --------ATCCAGGGCTAGTTT-------------TTTTTG-TTTTTAAACCAAA
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24006209 43 +  27210278 --------ATCCAGGGCTAGCTT-----TGCTGTTGTTGTTGTTTTTTAAGCCAAA
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21187499 39 -  23169006 --------ACCCAAGGCCGTTTT---------TTGGTTTTTCTTAACAAAACCAAA
i otoGar3.GL873541             C 0 I 50
s vicPac2.KB632437              19210805 18 -  22931326 --------ACCCATGGCTGGT--------------------------AA----AAA
i vicPac2.KB632437             C 0 I 1
s camFer1.KB017763               2805203 18 -   6207710 --------ACCCATGGCTGGT--------------------------AA----AAA
i camFer1.KB017763             C 0 I 1
s orcOrc1.KB316907              10840796 22 +  17242564 --------ACCCAAGGCTGGT--------------------------AAAAACAAA
i orcOrc1.KB316907             C 0 I 1
s equCab2.chr15                 84034712 22 +  91571448 --------ACCCAAAGCTGGT--------------------------GAAAGAACG
i equCab2.chr15                C 0 I 1
s cerSim1.JH767782               6808259 22 -  14545593 --------ACCCAAGGCTGGT--------------------------GAAAAAAAG
i cerSim1.JH767782             C 0 I 1
s felCat8.chrA3                134105338 26 + 140925898 --------ACCAGGGGCTGGTTT----------------------TAAAAACAaca
i felCat8.chrA3                C 0 I 32
s canFam3.chr17                 57838362 23 -  64289059 -----------CAAGGCTGGTTT----------------------TAAAAACAAAA
i canFam3.chr17                C 0 I 15
s musFur1.GL896914              13610399 26 -  19722643 --------ccCCAGGGCTGGTTT----------------------TAAAAACAACA
i musFur1.GL896914             I 87 I 17
s odoRosDiv1.KB229025            3033757 26 +   4816872 --------ccCCAAAGCTGGTTT----------------------TAAAAACAAAa
i odoRosDiv1.KB229025          I 178 I 23
s pteAle1.KB030580              19411485 24 -  23789964 --------ACCCAAAGCTGGC------------------------AAAGaacaaaa
i pteAle1.KB030580             C 0 I 11
s loxAfr3.scaffold_20           27618497 21 -  46401353 --------AAACAGTGCTGTTT-------------------------AAAAAAA--
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9965889 46 +  24341844 --------AAACAAGGCTGGttaaaaaaaatttaattaattaattaaaaaaaaa--
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1032323 27 -   2788317 --------ATCCAAGGCTAGTAAAAATA-------------------AAATAAA--
i dasNov3.JH567436             C 0 C 0
s xenTro7.KB021649              27751629 36 + 215906545 AAATAAGGATGAGATGTCAGTTT--------------------TTAAAAATTCAAA
i xenTro7.KB021649             C 0 C 0
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e danRer10.chr17                18108214 2164 -  53345113 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e ornAna1.chr4                  58039176  0 -  58987262 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e astMex1.KB882153               1887684 6275 +   2696342 I
e oryLat2.chr22                 17713695 1652 -  28810691 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e ficAlb2.chr2                 148476154 152 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280129 197 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH731579                503450  0 -    636928 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                 97242 6566 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e sarHar1.chr1_GL834688_random    516523 5985 +   3395230 I
e melGal1.chr22                 13571932  0 -  14786829 I
e anaPla1.KB742696               1244545 9705 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1969272 647 +   4979691 I
e chrPic2.chrUn_KK088237v1       5677291 6413 -  22294289 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530522886 8299 + 748055161 I
e taeGut2.chr3                  13879943 9148 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=267372.000000
s hg38.chr8_KI270814v1_alt         84706 43 +    141812 CAACCC-------AATGAAATACTTGTAGTTGGACTTGAAATGACTTTCC
s ponAbe2.chr8                  59054235 43 + 153482349 CAACGC-------AATGAAATACTTTTAGTTGGACTTGAAATGACTTTCC
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48132840 43 + 100215132 CAACCC-------AGTGAAATACTTGTAGCTGGACTTGAAATGACTTTCC
i nomLeu3.chr16                I 305 C 0
s calJac3.chr14                 99340095 42 + 108792865 CAATTT-------AATGAAATACTTGTTCTTAGATTCAAAATGAC-TTCC
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24006252 42 +  27210278 CAACTT-------AATGAAATACTTGTACTTAGATTCAAAATGAC-TTCC
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21187588 42 -  23169006 CCACCC-------AATTAAATACTGGCAGTTATAACTGAAACAAC-TTTT
i otoGar3.GL873541             I 50 C 0
s vicPac2.KB632437              19210824 40 -  22931326 AAACCC-------AGTGAAATACTT---GTTATGTCTGAAAACGCTTTCT
i vicPac2.KB632437             I 1 C 0
s camFer1.KB017763               2805222 40 -   6207710 AAACCC-------AATGAAGCACTT---GCTATGTCTGAAAAGGCTTTCT
i camFer1.KB017763             I 1 C 0
s orcOrc1.KB316907              10840819 43 +  17242564 AAACCC-------AATTAAATACGTGTAGTTACATCTGAAAAGGCTTTCT
i orcOrc1.KB316907             I 1 C 0
s equCab2.chr15                 84034735 43 +  91571448 AAACCC-------AATTAAATACTTGTAGTTATGTCTGGAATGGCCTTCT
i equCab2.chr15                I 1 C 0
s cerSim1.JH767782               6808282 43 -  14545593 AAACTC-------GATTAAATACTTGTAGTTATATCTGAAATGGCTTTCT
i cerSim1.JH767782             I 1 C 0
s felCat8.chrA3                134105396 50 + 140925898 AAACCCCAAGTCCAATTAAATACTTGTAGTGACATCTGGAACAGCTTTCT
i felCat8.chrA3                I 32 C 0
s canFam3.chr17                 57838400 50 -  64289059 AAACCCCAGGTCTACTTAAATACTTGTAGTTACATCTGGAACTACTTTCT
i canFam3.chr17                I 15 C 0
s musFur1.GL896914              13610442 50 -  19722643 AAATCCCAAGTCCAATTAAATACTTAGAGCTACATCTGGAACAGTTTTCT
i musFur1.GL896914             I 17 C 0
s odoRosDiv1.KB229025            3033806 50 +   4816872 acaTCCCAAGTCCAATTAAATACTTAGAGCTACATCTGGAACAGCTTTCT
i odoRosDiv1.KB229025          I 23 C 0
s pteAle1.KB030580              19411520 43 -  23789964 aaaacg-------aaTTAAATACTTGCAGTTACATCTTGAATGGCTTTCT
i pteAle1.KB030580             I 11 C 0
s loxAfr3.scaffold_20           27618518 39 -  46401353 AACCTC-------ATGTAAATACTTGTAGTTACAATTGAAATGACT----
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9965935 43 +  24341844 aaCCTC-------AAGTAAATACTTGTAGTTACAACTGAAATGACTTTCC
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1032350 42 -   2788317 GTACCC-------AGTTAAATAACTATAGTTACATCTG-AATGACTTTTT
i dasNov3.JH567436             C 0 C 0
s xenTro7.KB021649              27751665 43 + 215906545 ACCACC-------AATGCAAATCTTTTTTTTAAAGAAAATGTAACATTTC
i xenTro7.KB021649             C 0 n 0
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e danRer10.chr17                18108214 2164 -  53345113 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e ornAna1.chr4                  58039176  0 -  58987262 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e astMex1.KB882153               1887684 6275 +   2696342 I
e oryLat2.chr22                 17713695 1652 -  28810691 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e ficAlb2.chr2                 148476154 152 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280129 197 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH731579                503450  0 -    636928 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                 97242 6566 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e sarHar1.chr1_GL834688_random    516523 5985 +   3395230 I
e melGal1.chr22                 13571932  0 -  14786829 I
e anaPla1.KB742696               1244545 9705 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1969272 647 +   4979691 I
e chrPic2.chrUn_KK088237v1       5677291 6413 -  22294289 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530522886 8299 + 748055161 I
e taeGut2.chr3                  13879943 9148 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=1120952.000000
s hg38.chr8_KI270814v1_alt         84749 152 +    141812 TCTTAACACCTTTTACTTTACTAGGTGGCTTCATATGACAGTTTCTTTTTCCAATCAGAACATACTAC---ATTACCC-AAGGCACAGAGATTAC-AAAATAAACATGAGAC-AT---------------------------------------------------TTAAATAT-------------------ATTTCATATTTTTCCGGTATTTAAAATAATTGAAG
s ponAbe2.chr8                  59054278 152 + 153482349 TCTTAACACCTTTTACTTTACTAGGTGGCTTCATATGAAAGTTTCTTTTTCCAATCAGAACACACTAC---ATTACCC-AAGGCACACAGATTAC-AAAATAAACATGAGAC-AT---------------------------------------------------TTAAATAT-------------------ATTTCATATTTTTCCGGTATTTAAAATAATTGAAG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48132883 152 + 100215132 TCTTAACACCTTTTACTTTACTAGGTGGCTTCATATGAAAGTTTCTTTTTCCAATCAGAACACACTAC---ATTACCC-AAGGCACAGAGATTAC-AAAATAAACATGAGAC-AT---------------------------------------------------TTAAATAT-------------------ATTTCATATTTTTCTGGTATTTAAAATAATTGAAG
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99340137 143 + 108792865 TCTTAATACCTTTTACTTTACCAGACAGCTTCATATGAAAGTTTCTATTTCCAATCAGAAAACTCAAC---ATTACCC-AAGGCACAGAGATTAC-AAAGTAAACA-------------------------------------------------------------TCACCAT-------------------ACTTCATATCTTTCCAGTACTTAAAATAATTAAAG
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24006294 141 +  27210278 TC--AATACCTTTTACTTTACCAGACAGCTTCATATGAAAGTTTCTATTTCCAAACAGAAAACTCAAC---ATTACCC-AAGGCACAGAGATTAC-AAAGTAAACA-------------------------------------------------------------TCACCAT-------------------ATTTCATATCTTTCCAGTATTTAAAATAATGAAAG
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21187630  79 -  23169006 TA-----ACTTTTCACT------------------------TTTGGACTTCTACTAGGAAAACTCTAT---ATTACAT-AAGGCACAGTGATCAC-TGG-------------------------------------------------------------------------------------------------------------------TAAAATAACTGAAA
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19210864 155 -  22931326 TCTTAACAATTCTAACTTTACCAGATGGATTCATAGAAAGGTTTCTATTTCCACTCAGAAGACTCTACATTATTACCC-AGTGTACAACAATTAC-ATAGCAAACACGAGGC-AT---------------------------------------------------TTAAAAAT-------------------ATTTTCTATTTCTCACACATTTAAAATAATTGAAA
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2805262 154 -   6207710 TCTTAACAATTCTAACTTTACCAGATGGATTCATAGAAAGG-TTCTATTTCCACTCAGAAAACTCTACATTATTACCC-AGTGTACAACAACTAT-ATAGCAAACACGAGGC-AT---------------------------------------------------TTAAAAAT-------------------ATTTTCTATTTCTCAAATATTTAAAATAATTGAAA
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10840862 150 +  17242564 TCTTATCGTGTCCCACTTTACCAGATGGCTTCATATAAAAGTTTCTAATTCCACTGAGAAAACTC-----TATTACTC-AATGCACAGCAATTAC-AAAGCAAGCATGAGGC-AT---------------------------------------------------TTAAAAAT-------------------ATTTTCTATTTCTCAAGTATTTAAAATAATTGAAA
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84034778 154 +  91571448 TCTTTATACGTCTTACTTTACCAGATGGTTTCATATTAAAGTTTCTCTTTCTACCCAGAAAACTCTACGTTATTAACCAAATGCACAGCGATTAC-AAAGCAA--ACGAGAC-AT---------------------------------------------------TTAAAAAT-------------------ATTTTCTATTTTACAAGTGTTTAAAATTATTGAAA
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6808325 155 -  14545593 TCTCAACACTTCTTACTTTACCAGATGGCTTCATATTAAAGTTTCTCTTTCCACTCAGAAAACTCTACGTTATTAACC-ATTTCACAGCAATTAC-AAAGCAAACACGAGGA-AT---------------------------------------------------TTAAAAAT-------------------ATTTTCTATTTCTCAAATATTTGAAATAATTGTAC
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134105446 153 + 140925898 TCTTAACACCTCTCACTTTGCCAGATGGCTTCATGTTAAAGTCTCTCTCTCCACTCAGAAAACT--ACATTGTTACCC-AATGCGCAGTCATTAC-ACAGCAAACGTGAGAC-AT---------------------------------------------------TTCAAAAC-------------------ATGTTCTCTCTCTCAAGTATTTACAGTAATTAAAA
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57838450 155 -  64289059 TCTTAACACCTCTCTCTGTAACAGATGGCTTCATGTTAAAGTTTCTATTTCCACTCAGAAAACTCTACATTGTTACCC-GATGCACAGTAATTGC-AAAGCAAACATGAGAC-AT---------------------------------------------------TTAAAAAT-------------------ATTTTCTGTCTCTCAAGTATTTACAGTAATTGAAA
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13610492 155 -  19722643 TCTTAACACCTCTCTCTGTACCAGATGGCTTCATGTTGAAGCTTCTATTTCCACTCAGAAAACTCGACATTGTTACCC-AACGCACGGTAATTAC-AAAGCAAACATGAGAC-AT---------------------------------------------------TTTAAAAT-------------------ATTTTCTGTCTCTCAAGTATTTACAGTAATTGAAA
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3033856 155 +   4816872 TCTTAACACCTCTCACTTTACCAGATGGCTTCATGTTAAAGTTTCTATTTCCACTCAGAAAACTCTACATTGTTATCC-AATGCACAGTAATTAC-AAAGCAAACATGAGAC-AT---------------------------------------------------TTAAAAAT-------------------ATTTTCTGTCTCTCAAGTACTTACAGTAATTGAAA
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19411563 154 -  23789964 TCTTAAGGTTTCCTACTTTACCAGCTGGCTTCATATTAAAGTTGCTATTTCCACTCAGAAAACA--ACGTTATTACCC-AATGCACAGCAATTACAAAAGCAAACATGAGGC-AT---------------------------------------------------TTAAAAAT-------------------ACTTTCTATTCCCCACGTATTTGAAATAGCTGAAA
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27618557 153 -  46401353 --TAATAATCTCTCATTTTACCACATGGCTTTATATGAAAGTTTCTATTTCCACTCAGATAACTCTATATTATTAGCC-TATGTACAACAATTAC-AAAGTAAACATGAAGC-AT---------------------------------------------------TTAAAAAT-------------------ATTTTCTATTTCTCAAGTATTTAAAATAATTGAAA
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9965978 153 +  24341844 --TTAACATCTCTCATTTTACCAGATGGCTTCATATGAAAGTTTCTATTTCCACTCAGATAATTCTACACTATTAGCC-TATGCACAACAATTAC-AAAGTAAACATGAGGC-TT---------------------------------------------------TTAAAAAT-------------------ATTTTCTATTTCTCAAGTATTTAAAATAATTGAAA
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1032392 173 -   2788317 -AAAAATATCTCTCACTTTACCAAATGACTTCACATGAAAGCTTCTATTTTCATTCAGAAAA--CTACATTATGACCC-AAT--------------------------------TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTAAAATT-------------------TTTTTCTATTTCTCTACAATTTAAAATAACTGAAA
i dasNov3.JH567436             C 0 C 0
s xenTro7.KB021649              96735807 162 - 215906545 TGTTATATCCTTTTTTGCCACTAGGTGACTCCATG----ATTTTTAACGAATTATTAGTAAACA---------TATTG-CATGTATCATTGCTGC-AAATAACACACAAGGCTGT---------------------------------------------------TTAGCGGTAAACAAGCAACAGGACTGAACTCCTTGGGCTTCCCATGCCCAAAGCAAGTAAAG
i xenTro7.KB021649             n 0 n 0
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e danRer10.chr17                18108214 2164 -  53345113 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e ornAna1.chr4                  58039176   0 -  58987262 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382   0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820   0 -   5414369 I
e araMac1.AOUJ01470298               637   0 -       895 I
e astMex1.KB882153               1887684 6275 +   2696342 I
e oryLat2.chr22                 17713695 1652 -  28810691 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e ficAlb2.chr2                 148476154 152 + 157563209 I
e anoCar2.chr1                 148577473   4 + 263920458 I
e pseHum1.KB221189              55280129 197 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214   0 -  25666195 I
e allMis1.JH731579                503450   0 -    636928 I
e falPer1.KB390952               2753956   0 -  18327016 I
e falChe1.KB397350               1707310   0 -   3649919 I
e macEug2.GL109592                 97242 6566 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e sarHar1.chr1_GL834688_random    516523 5985 +   3395230 I
e melGal1.chr22                 13571932   0 -  14786829 I
e anaPla1.KB742696               1244545 9705 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1969272 647 +   4979691 I
e chrPic2.chrUn_KK088237v1       5677291 6413 -  22294289 I
e pelSin1.JH211373               2650239   0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530522886 8299 + 748055161 I
e taeGut2.chr3                  13879943 9148 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=316672.000000
s hg38.chr8_KI270814v1_alt         84901 61 +    141812 CCACT-A-TTTCCCTGCAGTCATTTGCTTAATCAATTCC----TTCTAGCTAAGCTCTCTCCACTCT
s ponAbe2.chr8                  59054430 61 + 153482349 CCACT-A-TTTCCCTATAGTCATTTGCTTAATCAGTTCC----TTCTAGCTAAACTCTCTCCACTCT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48133035 61 + 100215132 CCACT-A-TTTCCATACAGTCATTTGCTTAATCAATTCC----TTCTAGCTAAACTCTTTCCACTCT
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99340280 50 + 108792865 CCATT-------------ATTACTTGCGTGATCAATTCC----CTGTAGCTTGACTCTCTCTGTTCT
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24006435 62 +  27210278 CCATTAT-TTCCCCCATAATTACTTGCTTAATCAATTCC----CTGTAGCTTGACTCTCTCTATTCT
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21187709 57 -  23169006 CCACT-A-TTCCCT----GCAAATTGCTATATCAATTCT----GTCTAGCTTGACTCTTTCCACTCT
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19211019 55 -  22931326 CCACT-G-TCTCCA------CGGTCGCTAGCCCAATTCT----AGCCAGCTCGATCCTCTCCATTCT
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2805416 55 -   6207710 CCACT-G-TCCCCA------TGGTCGCTAGCCCAATTCT----AGCCAGCTCGATCCTCTCCATTCT
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10841012 55 +  17242564 TCATC-A-TTCCCA------CAATCGCTAGCCCAATTCT----AGCTAGCTCAATCCTCTCCACTCC
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84034932 55 +  91571448 TCATT-A-TCCCCA------CAATCACTAGCCCAATTCT----ATCTAGCTCAATTCTCTCTATTCC
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6808480 55 -  14545593 CCATC-A-TCCCCA------CAATTGCTAGCCCAATTCT----AGCAAGCTCAATCTTCTCCTTTCT
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134105599 59 + 140925898 CCACT-A-TCTCTG------CAATCAGCAGCCCAATTCTAGTGAGCGAGCGGGATTGTCTCCATGCT
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57838605 54 -  64289059 CCACT-A-TCCCCA------CAATCGCCAGCCCAATTCC----ATCGAGCTGAACCTTC-CCATGCT
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13610647 54 -  19722643 CCACC-A-TCCCCA------CAATCACCAGCCCAATCCC----AGCGAGCCAAACCCTC-CCCTGCT
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3034011 54 +   4816872 CCACT-A-TCCCCA------CAATCACCAACCCAATCCC----AGCGAGCTGAACCCTC-CCATGCT
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19411717 55 -  23789964 CCATT-T-CACCCA------CAATCTCTCGCCCAGTTCT----GGCCAGCTCAATCCCCTCCACCGC
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27618710 55 -  46401353 CCATT-A-TCCCCA------TAGGCACTAGCTTAATTCT----GGCTAGCTCAAATCTCTCCATTTC
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9966131 56 +  24341844 CCATT-ATTCCCCA------CAAGCCCTAGCTCAGTTCT----AGCTAGCTCAATCCTGTCCATTCC
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1032565 56 -   2788317 ACATT-ACTCCCCA------CAATCACTAGGGCAAGTCT----AGCTAGCTCAATTCTCTCCATTCT
i dasNov3.JH567436             C 0 C 0
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e danRer10.chr17                18108214 2164 -  53345113 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e xenTro7.KB021649              96735969  0 - 215906545 I
e ornAna1.chr4                  58039176  0 -  58987262 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e astMex1.KB882153               1887684 6275 +   2696342 I
e oryLat2.chr22                 17713695 1652 -  28810691 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e ficAlb2.chr2                 148476154 152 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280129 197 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH731579                503450  0 -    636928 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                 97242 6566 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e sarHar1.chr1_GL834688_random    516523 5985 +   3395230 I
e melGal1.chr22                 13571932  0 -  14786829 I
e anaPla1.KB742696               1244545 9705 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1969272 647 +   4979691 I
e chrPic2.chrUn_KK088237v1       5677291 6413 -  22294289 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530522886 8299 + 748055161 I
e taeGut2.chr3                  13879943 9148 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=230869.000000
s hg38.chr8_KI270814v1_alt         84962 34 +    141812 A-GGGATGAGAAACTGTGATTGGGAAAGTTACA----CC
s ponAbe2.chr8                  59054491 34 + 153482349 A-GGGATGAGAAACTGTGATCGGGAAAGTTACA----CC
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48133096 34 + 100215132 A-GGGATGAGAAACTGTGATCAGGAAAGTTACA----CC
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99340330 34 + 108792865 A-GGGATGAGAAACTGTGATTGGGAAAGTGACA----AC
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24006497 34 +  27210278 G-GGGATGAGAAACTGTGATTGGGAAAGTTACA----AC
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21187766 34 -  23169006 A-GAAATGAGAAACAGTGATGCAAAATGTTACA----AC
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19211074 34 -  22931326 A-GAAATGAGAAGCTGTGATCAGAAACGTTACA----AC
i vicPac2.KB632437             C 0 I 26
s camFer1.KB017763               2805471 34 -   6207710 A-GAAATAAGAAGCTGTGATCAGAAACGTTACA----AC
i camFer1.KB017763             C 0 I 26
s orcOrc1.KB316907              10841067 35 +  17242564 AGGAAATGAGAAACTGTGATCAGAAATGTTACA----AC
i orcOrc1.KB316907             C 0 I 3
s equCab2.chr15                 84034987 32 +  91571448 A-GGAATGAAAAACTG--ATCAGAAATATTACA----AC
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6808535 34 -  14545593 A-GGAATGAGAAACTGTCATTGGGAATGTCACA----AC
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134105658 32 + 140925898 G-GGAAGGAGCAACCGTGACCAGGAG-----CGATG-GC
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57838659 38 -  64289059 G-GGAAGGAGAGACTGTGATCTGAAATGTGCTATGGCAC
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13610701 37 -  19722643 T-GGAAGGAGGGACGGTGATCTGAAGTGTGCCGAAG-AC
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3034065 37 +   4816872 G-GGAAGGAGAGACTGTGATCTGAAACATGCCGATG-AC
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19411772 33 -  23789964 A-GGAATGA-AAACTGTGATCGTAAAGGTCACA----AC
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27618765 34 -  46401353 A-GGAATGAGAAATTATAAGCAGAAATGTTCAA----AC
i loxAfr3.scaffold_20          C 0 I 3
s triMan1.JH594629               9966187 34 +  24341844 A-GGAATGAGAAATTATAAGCAGAAATGTTAAA----AC
i triMan1.JH594629             C 0 I 3
s dasNov3.JH567436               1032621 34 -   2788317 A-AGAATGAGAAATTATAAGCAGAAATATTAAA----AC
i dasNov3.JH567436             C 0 I 3
s sarHar1.chr1_GL834688_random    522508 34 +   3395230 A-GACATACAAAACAGAGAGGGGCTAGCTTATG----AC
i sarHar1.chr1_GL834688_random I 5985 C 0
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e danRer10.chr17                18108214 2164 -  53345113 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e xenTro7.KB021649              96735969  0 - 215906545 I
e ornAna1.chr4                  58039176  0 -  58987262 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e astMex1.KB882153               1887684 6275 +   2696342 I
e oryLat2.chr22                 17713695 1652 -  28810691 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e ficAlb2.chr2                 148476154 152 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280129 197 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH731579                503450  0 -    636928 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                 97242 6566 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr22                 13571932  0 -  14786829 I
e anaPla1.KB742696               1244545 9705 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1969272 647 +   4979691 I
e chrPic2.chrUn_KK088237v1       5677291 6413 -  22294289 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530522886 8299 + 748055161 I
e taeGut2.chr3                  13879943 9148 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=32068.000000
s hg38.chr8_KI270814v1_alt         84996 24 +    141812 TTTCTGAATTCAACCAA--TAGAATC-
s ponAbe2.chr8                  59054525 24 + 153482349 TTTCTGAATTCAACCAA--TAGAATC-
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48133130 24 + 100215132 TTTCTGAATTCAACCAA--TAGAATC-
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99340364 24 + 108792865 TGCCTGAAGACAACTAA--CAGAGTC-
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24006531 24 +  27210278 TGCCTGAAGTCAACTAA--CAGAGTC-
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21187800 26 -  23169006 TGCCTGAAGTTAACCAGCTCACGGTC-
i otoGar3.GL873541             C 0 C 0
s orcOrc1.KB316907              10841105 24 +  17242564 TGCCTGAAGTCAACCAG--TAGAAGC-
i orcOrc1.KB316907             I 3 C 0
s equCab2.chr15                 84035019 24 +  91571448 TGCCTGAAGTCAACCAG--TAGCAGT-
i equCab2.chr15                C 0 I 4
s cerSim1.JH767782               6808569 24 -  14545593 TGCCGGAAGTCAAACAG--CAGCAGT-
i cerSim1.JH767782             C 0 I 4
s felCat8.chrA3                134105690 16 + 140925898 TGGA----GCCAACC------CGAGA-
i felCat8.chrA3                C 0 I 4
s canFam3.chr17                 57838697 17 -  64289059 AAACAG--ATGGAC-------AGAGT-
i canFam3.chr17                C 0 I 4
s musFur1.GL896914              13610738 21 -  19722643 TGCCAGAAGCCAACC-----AGGAGC-
i musFur1.GL896914             C 0 I 4
s odoRosDiv1.KB229025            3034102 17 +   4816872 TGAC----GTGGACC-----AGGAGC-
i odoRosDiv1.KB229025          C 0 I 4
s pteAle1.KB030580              19411805 24 -  23789964 CGCCTGAAGCCAACCAG--CAGCAGG-
i pteAle1.KB030580             C 0 I 4
s loxAfr3.scaffold_20           27618802 24 -  46401353 TGCCCGAAGTCAACCAG--TAGCAGT-
i loxAfr3.scaffold_20          I 3 I 1
s triMan1.JH594629               9966224 24 +  24341844 TGCCTGAAGTCAACCAG--TAACAGT-
i triMan1.JH594629             I 3 I 1
s dasNov3.JH567436               1032658 24 -   2788317 TGTCTGAAATCAACCAG--TAGTAGT-
i dasNov3.JH567436             I 3 I 1
s sarHar1.chr1_GL834688_random    522542 24 +   3395230 TTTCAAAAACCACTCAA---GGCACCT
i sarHar1.chr1_GL834688_random C 0 C 0
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e vicPac2.KB632437              19211108 26 -  22931326 I
e camFer1.KB017763               2805505 26 -   6207710 I
e danRer10.chr17                18108214 2164 -  53345113 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e xenTro7.KB021649              96735969  0 - 215906545 I
e ornAna1.chr4                  58039176  0 -  58987262 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e astMex1.KB882153               1887684 6275 +   2696342 I
e oryLat2.chr22                 17713695 1652 -  28810691 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e ficAlb2.chr2                 148476154 152 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280129 197 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH731579                503450  0 -    636928 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                 97242 6566 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr22                 13571932  0 -  14786829 I
e anaPla1.KB742696               1244545 9705 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1969272 647 +   4979691 I
e chrPic2.chrUn_KK088237v1       5677291 6413 -  22294289 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530522886 8299 + 748055161 I
e taeGut2.chr3                  13879943 9148 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=195855.000000
s hg38.chr8_KI270814v1_alt         85020 56 +    141812 TTGTC------------------------------------TTT-----AGTAGAAACTGTGGTTCACATCTAAGAATCAGCTA-CCC-ATTTTTCAGA
s ponAbe2.chr8                  59054549 56 + 153482349 TTGTC------------------------------------TTT-----AATAGAAACTGTGATTTACATCTAAGAATCAGCTA-CCC-ATTTTTCAGA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48133154 56 + 100215132 TTGTC------------------------------------TTT-----AGTAGAAACTGTGGTTCACATCTAAGAATCAGCTA-CCC-ATTTTTCAGA
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99340388 92 + 108792865 TGGTCTATTGGTTGACTCCAGGTCAGGCAACCAGTTCCATTTCT-----TGTAGAAACCATAGTTCACATCCAAGAATCAACTC-CCC-ATTCCTCAGG
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24006555 92 +  27210278 TGGTCTATTGGTTGACTTCAGGTCAGGCAACCAGTTCTGTTTCT-----TGTAAAAACCATAGTTCACATCCAAGAATCAACTC-CCC-ATTCTTCAGG
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21187826 57 -  23169006 CTGCC------------------------------------TTT-----AGTGGAAAGTGGGGCATGGACCGAAGAACTAATTAGTCC-CTTTTGGGGG
i otoGar3.GL873541             C 0 C 0
s equCab2.chr15                 84035047 57 +  91571448 TTGCC------------------------------------TTC-----GATGGAAGCTGTGAGGCACATCCAGGAATCAACAGACCC-ATTCCTCATG
i equCab2.chr15                I 4 C 0
s cerSim1.JH767782               6808597 57 -  14545593 CCACC------------------------------------TCC-----TGTGGCAGCTGTGGTGCATATCCAGGAATCAAGGGACCC-GTTCCTCGTG
i cerSim1.JH767782             I 4 C 0
s felCat8.chrA3                134105710 58 + 140925898 CTGTC------------------------------------TTC-----AGGGGGGACCGTGGTGCACATCCAAGAATCAGCTGACCCTTTTCTTCGCG
i felCat8.chrA3                I 4 C 0
s canFam3.chr17                 57838718 57 -  64289059 ATGTC------------------------------------TTC-----AGTGGAAACAGTGGTGCACATCCAAGAACCAACCAACCC-TTTCTTCTTG
i canFam3.chr17                I 4 C 0
s musFur1.GL896914              13610763 57 -  19722643 CCGTC------------------------------------TCC-----AGTGGACACCGTGCTGCACGTCCAAGAACCCACCGACAC-TTTCTTCCTG
i musFur1.GL896914             I 4 C 0
s odoRosDiv1.KB229025            3034123 57 +   4816872 CCATC------------------------------------TTC-----AGTGGAAACCGTGATGCACGTCCAAGAACCAACTGACCC-TTTCTTCGTG
i odoRosDiv1.KB229025          I 4 C 0
s pteAle1.KB030580              19411833 55 -  23789964 TTGCC------------------------------------CTC-----AGTGGGAGC--TGCTGCACATCCGAAATTCAACCGACCG-GTTCTTCAAG
i pteAle1.KB030580             I 4 C 0
s loxAfr3.scaffold_20           27618827 57 -  46401353 TTGTC------------------------------------TTC-----CATGGAAATTGTGGTACATATCCAAGAATCAGCTAAGCC-ATTCTTTATG
i loxAfr3.scaffold_20          I 1 C 0
s triMan1.JH594629               9966249 57 +  24341844 TGGTC------------------------------------TTC-----AGTGGAAATTGTGGTACATATCTAAGAATCAACTAACCC-ATTCTTCATG
i triMan1.JH594629             I 1 C 0
s dasNov3.JH567436               1032683 58 -   2788317 TTGCC------------------------------------TTTA----AGTGAAAACTGTAGTACATATCAAAGAATAAAGTAAGCC-ATTTCTTATG
i dasNov3.JH567436             I 1 C 0
s sarHar1.chr1_GL834688_random    522566 51 +   3395230 --------------------------------------------GGGAAAATAGAAAACCCTGCTATTATGAAagatgaaa---aatc-attttaaaaa
i sarHar1.chr1_GL834688_random C 0 C 0
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e vicPac2.KB632437              19211108 26 -  22931326 I
e camFer1.KB017763               2805505 26 -   6207710 I
e danRer10.chr17                18108214 2164 -  53345113 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e xenTro7.KB021649              96735969  0 - 215906545 I
e ornAna1.chr4                  58039176  0 -  58987262 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e astMex1.KB882153               1887684 6275 +   2696342 I
e oryLat2.chr22                 17713695 1652 -  28810691 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e ficAlb2.chr2                 148476154 152 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280129 197 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH731579                503450  0 -    636928 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                 97242 6566 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr22                 13571932  0 -  14786829 I
e anaPla1.KB742696               1244545 9705 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1969272 647 +   4979691 I
e chrPic2.chrUn_KK088237v1       5677291 6413 -  22294289 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530522886 8299 + 748055161 I
e taeGut2.chr3                  13879943 9148 - 112617285 I
e orcOrc1.KB316907              10841129  0 +  17242564 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-522.000000
s hg38.chr8_KI270814v1_alt         85076 51 +    141812 --ATC-TCTTTTGGCAGTTG-------------AAGGTGAAGGAGG-TGGGTGTTGAA--------CAG-------------TCTCTT----T
s ponAbe2.chr8                  59054605 51 + 153482349 --ATC-TTTTTTGGCAGTTG-------------AAGCTGAAGGAGG-TGGGTGTTGAA--------CAG-------------TCTCTT----T
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48133210 51 + 100215132 --ATC-TTTTTCGGCAGTTG-------------AAGCTGAAGGAGG-TGGGTGTTGAA--------CAG-------------GCTCTT----T
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99340480 49 + 108792865 --TTC-TTTTTTGGCAGATG-------------AATCTGAAGGAGA-TGGGTATTGAA--------C---------------CCTCTT----T
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24006647 49 +  27210278 --TTC-TTTTTTGGCAGATG-------------AAGCTGAAGGAGA-TGGGTACTGAA--------C---------------CCTCTT----T
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21187883 62 -  23169006 --TTC-TTTTTTGGTAGATGAGACAATCA----AAGCTGAAGGAGG-TCGGTGCCGAA--------CAA-----------TTTCTCTT----A
i otoGar3.GL873541             C 0 C 0
s equCab2.chr15                 84035104 63 +  91571448 --TGC---TTTTGGCAGATGAAGCAGTCAAATTAAG-TGAAGGGAA-GGGTGTTCCAA--------CAA-----------TCTCTATT----T
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6808654 64 -  14545593 --TTC---TCCCAGCAGATGAAGCCATCAAATTAAGCTGAAGGGGA-GGATGTTCCAA--------CAG-----------TCTCTCTT----T
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134105768 73 + 140925898 --TTC---TCGTAGCAGATGAAGCCATCAAATAAGGCT--AGCGTG-GGGAGTTCCAA--------CAAGCTCTTTTCTCTCTCTCTT----T
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57838775 73 -  64289059 --TTC---TTATGGCAGATGAAGCGATCAAATAAGGCT--AGAGTA-GGGTGTTGCAA--------CTATCTCTCTTTTCTCTCTCTT----T
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13610820 71 -  19722643 --TTC---TTACGGCAGACCAAGCCATCAGATAAGGCT--AACGCG-GGGAGCCACGA--------CAA--TCTCTCTTTTCTCTCTT----A
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3034180 62 +   4816872 --TTC---CTTTGGCAGATGAAGCGATCAGATAAGGCT--AGTGTG-GGATGC-------------------CTCTTTTCTCTCTCTT----T
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19411888 73 -  23789964 --TG----TGTTGGCAGACGAAGCAA-AAAATGCAGCTCAAGGGGA-GGGCGTTCCAA--------CAATCCCTCTTTTCTGTCCCTT----C
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27618884 71 -  46401353 --TTC-TTTTTTGGCAAATGAAGCAATCAAACAAAGCTGAAGGAGACTGGTGTTCCAA--------CAA-----------TTTTTCTTTTTCT
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9966306 68 +  24341844 --TTC-TTTTTTGGCAAATGAAGCAATCACACAAAGCTGCAGGAGACTGGTGTTCCAA--------CAA-----------TTTCTCTTT---T
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1032741 76 -   2788317 --CTCTTTTTTTGACATATAAAGCAAACAGACAAAGCTGAAGGAGATGTGAGTTCCAAACAGCGTCCTA-----------TTTCTCCC----T
i dasNov3.JH567436             C 0 C 0
s sarHar1.chr1_GL834688_random    522617 49 +   3395230 --tcc---tatcaGTGATTT-------------TAATTGACTTAAC-TAACTTTCTAA--------AAg-------------taattt----t
i sarHar1.chr1_GL834688_random C 0 C 0
s xenTro7.KB021649              49599063 48 + 215906545 ATTTC---TTTAGGGAATAGAAAC--TTAAGTAAGATTATAGACAG-AGGTTTT---------------------------------------
i xenTro7.KB021649             n 0 C 0
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e vicPac2.KB632437              19211108 26 -  22931326 I
e camFer1.KB017763               2805505 26 -   6207710 I
e danRer10.chr17                18108214 2164 -  53345113 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e ornAna1.chr4                  58039176  0 -  58987262 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e astMex1.KB882153               1887684 6275 +   2696342 I
e oryLat2.chr22                 17713695 1652 -  28810691 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e ficAlb2.chr2                 148476154 152 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280129 197 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH731579                503450  0 -    636928 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                 97242 6566 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr22                 13571932  0 -  14786829 I
e anaPla1.KB742696               1244545 9705 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1969272 647 +   4979691 I
e chrPic2.chrUn_KK088237v1       5677291 6413 -  22294289 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530522886 8299 + 748055161 I
e taeGut2.chr3                  13879943 9148 - 112617285 I
e orcOrc1.KB316907              10841129  0 +  17242564 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=232736.000000
s hg38.chr8_KI270814v1_alt         85127 63 +    141812 CT--AAAACCAAAAGAACT-G----GTAATTCA------GAGAAATA---C-----ATATACGAAAGT-AAATG------TTTTTCACAAA
s ponAbe2.chr8                  59054656 63 + 153482349 CT--GAAACCAAGAGAACT-G----GTAATTCA------GAGAAACA---C-----ATATACGAAACT-AAATG------TTTTTCACAAG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48133261 63 + 100215132 CT--AAAACCAAGAGAACT-G----GTAATTCA------GAGAAACA---C-----ATATACGAAACT-AAATG------TTTTTCACAAG
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99340529 63 + 108792865 CT--AAAACCAGGAAAACT-G----GTATTTTA------GAGAAACA---C-----AGATACAAAGCT-AAGTG------GTTTTCATAAA
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24006696 63 +  27210278 CT--AAAACCAAGAGAACT-G----GTATTTCA------GAGAAACA---C-----AGATACAAAGCT-AAGTA------GTTTTCACAAA
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21187945 71 -  23169006 CTACAAAACCAAGGGGACC-A----GTATTTCA------GAGAAACA---C-----AGACACAAAGCT-AAAAGCATAAACTTTTCACTAA
i otoGar3.GL873541             C 0 C 0
s equCab2.chr15                 84035167 69 +  91571448 CT--AAAACCAA-GGGGCCAG----GAGTTCCA------GACAAATA---C-----AGCCACAAAGTG-AAAGGCAGATGGCTTTCACAAA
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6808718 59 -  14545593 GC--AAAACCAA-GGGGCAGG----GGGTTGCA------GA------------------CACAAAGCT-AAAGGCAGATGGCTTTCACAAA
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134105841 67 + 140925898 CT---AAACCAA-GGGACT-G----GTGCTTTG------GAGAAATA---C-----AGACATAAAGCT-AAAAGCAGATGGCTCATGTGGA
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57838848 67 -  64289059 CT---AAACTGA-GGGACT-G----GTGTTGCA------GGGAAATT---G-----AGACACAAAACT-AAAAGCAGACAGCTCTTGCAAA
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13610891 67 -  19722643 CT---ACACCAA-GGGACT-G----GTGTTTCA------GGGAAAGT---C-----AGACACAAAGCC-AAAAGCAGATGACTCTTGCAAA
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3034242 67 +   4816872 CT---ACACCAA-AGGACT-G----GTGTTTTA------GGGAAATT---C-----AGACACAGAGCT-ACAAGCAGACGGCTCTTGCAAA
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19411961 68 -  23789964 CC--CAAACCGAGGGGACT-G----GCATCGCA------GAGAAATG---T-----GGACA-AAAGCT-AAGAGCAGATGGTTTTCGCGAA
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27618955 71 -  46401353 CTGTAAAACCAAGGGGACT-G----ATGTTGCA------GAGAAACA---C-----CGACACAAAGCT-AAAAGCAGATGGTTTTCACAAA
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9966374 72 +  24341844 CTCTAAAACCAAGGGGACT-G----ATGTTGCA------GAGAAACA---C-----AGACACAAAGCTAAAAAGCAGATGGTTTTCACAAA
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1032817 71 -   2788317 CTGAAAAAAAAAAAGGACT-G----GTATTGCA------GAGAAACA---C-----AGACACAAAGCT-GAAAGTAAATGGTTTTCACAAA
i dasNov3.JH567436             C 0 C 0
s sarHar1.chr1_GL834688_random    522666 65 +   3395230 ct--tcaataattcaGAAT-G----ATAAGATA------GGAAAAAT---CCAAGGAAAAATGTATCT-AAATG--------TTTTCCAA-
i sarHar1.chr1_GL834688_random C 0 C 0
s allMis1.JH739256                321222 80 -    882412 ct--gaaaccaaaggagca-gcaccgagtcacattaattaagaaacttgcc-----AAATGACCAGCC-AAATT--GTTACCTTCTGTACA
i allMis1.JH739256             n 0 C 0
s xenTro7.KB021649              49599111 66 + 215906545 --TTTAAAAAAAAAAAAAT-A----ATAATTTG------GGGAAATA---C-----AGAGA-AAATAG-CAATGCTGT--GTTCACATAAA
i xenTro7.KB021649             C 0 C 0
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e vicPac2.KB632437              19211108 26 -  22931326 I
e camFer1.KB017763               2805505 26 -   6207710 I
e danRer10.chr17                18108214 2164 -  53345113 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e ornAna1.chr4                  58039176  0 -  58987262 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e astMex1.KB882153               1887684 6275 +   2696342 I
e oryLat2.chr22                 17713695 1652 -  28810691 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e ficAlb2.chr2                 148476154 152 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280129 197 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                 97242 6566 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr22                 13571932  0 -  14786829 I
e anaPla1.KB742696               1244545 9705 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1969272 647 +   4979691 I
e chrPic2.chrUn_KK088237v1       5677291 6413 -  22294289 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530522886 8299 + 748055161 I
e taeGut2.chr3                  13879943 9148 - 112617285 I
e orcOrc1.KB316907              10841129  0 +  17242564 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=114889.000000
s hg38.chr8_KI270814v1_alt         85190 29 +    141812 TCACCTGAAAGGTGAAGTCTGAAAATTGC
s ponAbe2.chr8                  59054719 29 + 153482349 TCACCTGGAAGGTGAAGTCTGAAAATTGC
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48133324 29 + 100215132 TCACCTGGAAAGTGAAGTCTGAAAATTGC
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99340592 29 + 108792865 TCACCAAGAAGATGAAGTTTGAAAACTGC
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24006759 29 +  27210278 TCACCAGGAAGGTGAAGTTTGAAAACTGC
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21188016 29 -  23169006 ACACCTGGAAGATGAAGCCTGAAAACCCC
i otoGar3.GL873541             C 0 C 0
s equCab2.chr15                 84035236 29 +  91571448 TCACCAGGAAGATAAAGTCTGAAAATTGT
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6808777 29 -  14545593 TCACCAGGAAGACGAAGTCTGAAAATGGT
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134105908 28 + 140925898 TCGCCAGCAAGATCAAGTCTGAAATCGT-
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57838915 29 -  64289059 TCACCAGGAAGCTGGTTGCCAAAAACTGC
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13610958 29 -  19722643 TCACCAGGAACATGAAGTCCAAAAATGGT
i musFur1.GL896914             C 0 I 205
s odoRosDiv1.KB229025            3034309 29 +   4816872 TCACCAGGAAGATGAAGTCCGAAAACTGT
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19412029 23 -  23789964 TCCGCAGGAA------TTCTGAAAACTGC
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27619026 29 -  46401353 TCACCAAGAAGATAAAGTCCAAAAAGTAT
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9966446 29 +  24341844 TCACCAAGAAGATAAAGTCCAAAAACGAT
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1032888 29 -   2788317 TCATTAGGAAAATAATGATTTGTTATCAT
i dasNov3.JH567436             C 0 I 7
s sarHar1.chr1_GL834688_random    522731 14 +   3395230 -------------GGAGtataaaaatg--
i sarHar1.chr1_GL834688_random C 0 C 0
s allMis1.JH739256                321302 22 -    882412 TCATCATATAAGAGAAACATGT-------
i allMis1.JH739256             C 0 C 0
s xenTro7.KB021649              49599177 23 + 215906545 CCGTGAGATTAATGGAAAAGTAA------
i xenTro7.KB021649             C 0 C 0
s danRer10.chr17                18110378 29 -  53345113 TCTCCAGAGATGTGGAGGTGAAACATGTA
i danRer10.chr17               I 2164 C 0
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e vicPac2.KB632437              19211108 26 -  22931326 I
e camFer1.KB017763               2805505 26 -   6207710 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e ornAna1.chr4                  58039176  0 -  58987262 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e astMex1.KB882153               1887684 6275 +   2696342 I
e oryLat2.chr22                 17713695 1652 -  28810691 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e ficAlb2.chr2                 148476154 152 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280129 197 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                 97242 6566 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr22                 13571932  0 -  14786829 I
e anaPla1.KB742696               1244545 9705 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1969272 647 +   4979691 I
e chrPic2.chrUn_KK088237v1       5677291 6413 -  22294289 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530522886 8299 + 748055161 I
e taeGut2.chr3                  13879943 9148 - 112617285 I
e orcOrc1.KB316907              10841129  0 +  17242564 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=5507.000000
s hg38.chr8_KI270814v1_alt         85219 53 +    141812 CCTGCTTTCAAAACCAGTA------ATGAAAT-GGAGAAA----GTGTTTAAAA------------------------ACAAAAACGG----------
s ponAbe2.chr8                  59054748 53 + 153482349 CCTGCTTTCAAAACCAGTA------ATGAAAT-GGAGAAA----GTGTTTAAAA------------------------ACAAAAACAG----------
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48133353 53 + 100215132 CCTGCTTTCAAAACCAGTA------ATGAAAT-GGAGAAA----GTGTTTAAAA------------------------ACAAAAACAG----------
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99340621 53 + 108792865 CTTGCTACCAAAAATGGTC------ATGAAAT-GGACAAA----GTGTTTAAAA------------------------ACAAAAACAG----------
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24006788 53 +  27210278 CTTGCTATCAAAAATGGTA------AAGAAAT-GGACAAA----GTGTTTAAAA------------------------ACAATAACAG----------
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21188045 53 -  23169006 ACCACTGTCCCAAACAGTA------GAGCAGT-GGAGAAA----GAGTTTAAAA------------------------ACGTAACTGG----------
i otoGar3.GL873541             C 0 M 1840
s equCab2.chr15                 84035265 50 +  91571448 GCTGCTGTCATAAATGGTG------ATAAAAT-GGAGAAA----GTGATTC---------------------------AGAAAAAAAG----------
i equCab2.chr15                C 0 I 1
s cerSim1.JH767782               6808806 52 -  14545593 GCGGCTGTCATAAATGGTG------ATAAAAT-GGGGAGA----ACGTTTCAA-------------------------AAAAAAAAAG----------
i cerSim1.JH767782             C 0 I 1
s felCat8.chrA3                134105936 59 + 140925898 GCAACTGTCATAAACGGTG------ATCAAGT-AGAGAAA----GTGTTTTTTTTTTTTT------------------TTAAAAAAGG----------
i felCat8.chrA3                C 0 I 2
s canFam3.chr17                 57838944 54 -  64289059 ATTGCCATCGTAAATGGTG------ACAAAAT-GGGGAAA----GCATTTT-----TTTT------------------TTAAAAGAGG----------
i canFam3.chr17                C 0 I 1
s musFur1.GL896914              13611192 77 -  19722643 cttgtgatctctctctgtc------aaataaa-taaataa----aaatctttaaaataataaaaaaaataaataaaaaataaaaaaag----------
i musFur1.GL896914             I 205 I 1
s odoRosDiv1.KB229025            3034338 59 +   4816872 GTTGCCGTCGTAAACGGTG------ACAAAGT-GGGGAAA----GCGTTTTTGTTTTTTT------------------TTTTTAAAGG----------
i odoRosDiv1.KB229025          C 0 I 1
s pteAle1.KB030580              19412052 48 -  23789964 --CGCTGTCACCCACGGTG------ATAAAAT-GAGGAAG----ATGTTTA---------------------------CAAGAAAAAG----------
i pteAle1.KB030580             C 0 I 1
s loxAfr3.scaffold_20           27619055 45 -  46401353 GCTGCTGTCCTAA-CAGTG------ATAAAAT-GGGGAAA----GTGTT-----------------------------TAAAAAAA------------
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9966475 56 +  24341844 GCTGCTGGCATAAGCGGTG------ATAAAATGGGGGAAA----GTGTTTTTAAAAAA--------------------TGAAAAGG------------
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1032924 51 -   2788317 GATGTTATCATAA---ATG------ATAAATTGGaaaaaa----aaattttttaat----------------------ttttaGAA------------
i dasNov3.JH567436             I 7 C 0
s sarHar1.chr1_GL834688_random    522745 37 +   3395230 --catttacaaaattaatt------tttaaat-ggaaaa---------------------------------------ttagaGG-------------
i sarHar1.chr1_GL834688_random C 0 C 0
s allMis1.JH739256                321324 53 -    882412 TCTGTTTTTAAAGAAAGAC------CTGAAAA-GAAAGAT----GGTCATATCA------------------------ATGAAGAGGA----------
i allMis1.JH739256             C 0 C 0
s xenTro7.KB021649              49599200 54 + 215906545 ------TTCAAAAGAAGTGCCTATTATAAAAA-GGAAAGATTCTAAGTTTA---------------------------TCCTAAACAG----------
i xenTro7.KB021649             C 0 I 9
s danRer10.chr17                18110407 57 -  53345113 ---TTTGATTGAGCCAATG------ATGGAAA-ACAGCAA----TGATATT---------------------------AGGAAAAAAGACAGAACCGT
i danRer10.chr17               C 0 C 0
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e vicPac2.KB632437              19211108 26 -  22931326 I
e camFer1.KB017763               2805505 26 -   6207710 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e ornAna1.chr4                  58039176  0 -  58987262 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e astMex1.KB882153               1887684 6275 +   2696342 I
e oryLat2.chr22                 17713695 1652 -  28810691 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e ficAlb2.chr2                 148476154 152 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280129 197 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                 97242 6566 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr22                 13571932  0 -  14786829 I
e anaPla1.KB742696               1244545 9705 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1969272 647 +   4979691 I
e chrPic2.chrUn_KK088237v1       5677291 6413 -  22294289 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530522886 8299 + 748055161 I
e taeGut2.chr3                  13879943 9148 - 112617285 I
e orcOrc1.KB316907              10841129  0 +  17242564 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=13923.000000
s hg38.chr8_KI270814v1_alt         85272 1 +    141812 A
s ponAbe2.chr8                  59054801 1 + 153482349 A
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48133406 1 + 100215132 A
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99340674 1 + 108792865 A
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24006841 1 +  27210278 A
i saiBol1.JH378126             C 0 C 0
s equCab2.chr15                 84035316 1 +  91571448 A
i equCab2.chr15                I 1 C 0
s cerSim1.JH767782               6808859 1 -  14545593 A
i cerSim1.JH767782             I 1 C 0
s felCat8.chrA3                134105997 1 + 140925898 A
i felCat8.chrA3                I 2 C 0
s canFam3.chr17                 57838999 1 -  64289059 A
i canFam3.chr17                I 1 C 0
s musFur1.GL896914              13611270 1 -  19722643 a
i musFur1.GL896914             I 1 C 0
s odoRosDiv1.KB229025            3034398 1 +   4816872 A
i odoRosDiv1.KB229025          I 1 C 0
s pteAle1.KB030580              19412101 1 -  23789964 A
i pteAle1.KB030580             I 1 C 0
s loxAfr3.scaffold_20           27619100 1 -  46401353 A
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9966531 1 +  24341844 A
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1032975 1 -   2788317 A
i dasNov3.JH567436             C 0 C 0
s sarHar1.chr1_GL834688_random    522782 1 +   3395230 A
i sarHar1.chr1_GL834688_random C 0 C 0
s allMis1.JH739256                321377 1 -    882412 A
i allMis1.JH739256             C 0 C 0
s danRer10.chr17                18110464 1 -  53345113 A
i danRer10.chr17               C 0 C 0
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e vicPac2.KB632437              19211108 26 -  22931326 I
e camFer1.KB017763               2805505 26 -   6207710 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e xenTro7.KB021649              49599254 9 + 215906545 I
e ornAna1.chr4                  58039176 0 -  58987262 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e astMex1.KB882153               1887684 6275 +   2696342 I
e oryLat2.chr22                 17713695 1652 -  28810691 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e ficAlb2.chr2                 148476154 152 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221189              55280129 197 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                 97242 6566 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr22                 13571932 0 -  14786829 I
e anaPla1.KB742696               1244545 9705 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1969272 647 +   4979691 I
e chrPic2.chrUn_KK088237v1       5677291 6413 -  22294289 I
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530522886 8299 + 748055161 I
e taeGut2.chr3                  13879943 9148 - 112617285 I
e orcOrc1.KB316907              10841129 0 +  17242564 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21188098 1840 -  23169006 M
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=65726.000000
s hg38.chr8_KI270814v1_alt         85273 24 +    141812 AAGAAATAACTCA------------TGAGAG-AGCTG-------------
s ponAbe2.chr8                  59054802 24 + 153482349 AAGAAATAACTCA------------TGAGAG-AGCTG-------------
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48133407 24 + 100215132 AAGAAATAACTCA------------TGAGAG-AGCTG-------------
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99340675 25 + 108792865 AAGAAATACCTCC------------TGAGAGAAATTG-------------
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24006842 25 +  27210278 AAGAAATACCTCC------------TGAGAGAAATTG-------------
i saiBol1.JH378126             C 0 C 0
s equCab2.chr15                 84035317 25 +  91571448 AGGAAATACCTCT------------TGAGAGAAATTG-------------
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6808860 25 -  14545593 AGGAAACACCTCT------------TGAGAGAAATTG-------------
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134105998 25 + 140925898 AAAAAACACCTCC------------CGAGAAAACCTG-------------
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57839000 24 -  64289059 AAGAAACACCTCT-------------GACACAACCTG-------------
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13611271 25 -  19722643 aagaaaCATCTCT------------CGATAAAACCTG-------------
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3034399 25 +   4816872 AAGAAACACCTGT------------CAACAAAACCTG-------------
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19412102 25 -  23789964 GGGAAACGCTTCT------------TGAGAGAAACTG-------------
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27619101 25 -  46401353 AAGAAACACCTCC------------TGAGAGAAATTA-------------
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9966532 25 +  24341844 AAGAAACACCTCC------------TGAGAGAAATCA-------------
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1032976 25 -   2788317 AGGAAACCCCTCC------------TGAAAGAAATTA-------------
i dasNov3.JH567436             C 0 C 0
s sarHar1.chr1_GL834688_random    522783 20 +   3395230 TTGCAGGACTTTG------------TCAGAA-----A-------------
i sarHar1.chr1_GL834688_random C 0 C 0
s allMis1.JH739256                321378 25 -    882412 AATGCAGACACCA------------TGAGAAGCACAG-------------
i allMis1.JH739256             C 0 C 0
s cheMyd1.KB479743               1969919 19 +   4979691 AGGGGATATACC------------------AGAATTA-------------
i cheMyd1.KB479743             I 647 C 0
s xenTro7.KB021649              49599263 21 + 215906545 AAGAAAGG---CA------------AAAGAGAAATG--------------
i xenTro7.KB021649             I 9 C 0
s danRer10.chr17                18110465 47 -  53345113 ---AAGAGCTTCTGTCTTTAAAAGGTAAAAGCAATTAACCAAATGACGTG
i danRer10.chr17               C 0 C 0
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e vicPac2.KB632437              19211108 26 -  22931326 I
e camFer1.KB017763               2805505 26 -   6207710 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e ornAna1.chr4                  58039176  0 -  58987262 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e astMex1.KB882153               1887684 6275 +   2696342 I
e oryLat2.chr22                 17713695 1652 -  28810691 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e ficAlb2.chr2                 148476154 152 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280129 197 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                 97242 6566 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr22                 13571932  0 -  14786829 I
e anaPla1.KB742696               1244545 9705 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e chrPic2.chrUn_KK088237v1       5677291 6413 -  22294289 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530522886 8299 + 748055161 I
e taeGut2.chr3                  13879943 9148 - 112617285 I
e orcOrc1.KB316907              10841129  0 +  17242564 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21188098 1840 -  23169006 M
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=28964.000000
s hg38.chr8_KI270814v1_alt         85297 4 +    141812 GCCT--
s ponAbe2.chr8                  59054826 4 + 153482349 GCCT--
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48133431 4 + 100215132 GCCT--
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99340700 4 + 108792865 GTCT--
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24006867 4 +  27210278 GTCT--
i saiBol1.JH378126             C 0 C 0
s equCab2.chr15                 84035342 4 +  91571448 GCCT--
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6808885 4 -  14545593 GCCT--
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134106023 4 + 140925898 GCCT--
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57839024 4 -  64289059 GATT--
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13611296 4 -  19722643 ACCT--
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3034424 4 +   4816872 GCCT--
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19412127 4 -  23789964 GCCT--
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27619126 4 -  46401353 GCCT--
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9966557 4 +  24341844 GCCT--
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1033001 4 -   2788317 GCCT--
i dasNov3.JH567436             C 0 C 0
s sarHar1.chr1_GL834688_random    522803 4 +   3395230 GCTT--
i sarHar1.chr1_GL834688_random C 0 C 0
s ornAna1.Contig30778               2599 4 +      7217 GCAT--
i ornAna1.Contig30778          n 0 C 0
s allMis1.JH739256                321403 4 -    882412 GCCT--
i allMis1.JH739256             C 0 n 0
s cheMyd1.KB479743               1969938 4 +   4979691 ATCT--
i cheMyd1.KB479743             C 0 I 6
s xenTro7.KB021649              49599284 2 + 215906545 -CC---
i xenTro7.KB021649             C 0 C 0
s danRer10.chr17                18110512 4 -  53345113 --TTAT
i danRer10.chr17               C 0 C 0
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e vicPac2.KB632437              19211108 26 -  22931326 I
e camFer1.KB017763               2805505 26 -   6207710 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e astMex1.KB882153               1887684 6275 +   2696342 I
e oryLat2.chr22                 17713695 1652 -  28810691 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e ficAlb2.chr2                 148476154 152 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221189              55280129 197 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                 97242 6566 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr22                 13571932 0 -  14786829 I
e anaPla1.KB742696               1244545 9705 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e chrPic2.chrUn_KK088237v1       5677291 6413 -  22294289 I
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530522886 8299 + 748055161 I
e taeGut2.chr3                  13879943 9148 - 112617285 I
e orcOrc1.KB316907              10841129 0 +  17242564 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21188098 1840 -  23169006 M
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-17901.000000
s hg38.chr8_KI270814v1_alt         85301  8 +    141812 ----T----------AACT-CTT
s ponAbe2.chr8                  59054830  9 + 153482349 ----T----------AACTTCTT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48133435  9 + 100215132 ----T----------AACTTCTT
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99340704  9 + 108792865 ----C----------AACTTCCC
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24006871  9 +  27210278 ----C----------AACTTCCC
i saiBol1.JH378126             C 0 C 0
s equCab2.chr15                 84035346  9 +  91571448 ----T----------ACCTTCCT
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6808889  9 -  14545593 ----T----------ACTTTCCT
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134106027  6 + 140925898 ----T----------A---TCCT
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57839028  9 -  64289059 ----T----------CACATTCT
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13611300  9 -  19722643 ----T----------AATGTCCT
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3034428  9 +   4816872 ----T----------AATGTCCT
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19412131  9 -  23789964 ----T----------AACTTCCT
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27619130  9 -  46401353 ----T----------AACTTCCC
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9966561 19 +  24341844 ----TACCTTTCCTGAACTTCCT
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1033005  9 -   2788317 ----T----------AACTTCCT
i dasNov3.JH567436             C 0 C 0
s sarHar1.chr1_GL834688_random    522807  9 +   3395230 ----T----------GATTATTT
i sarHar1.chr1_GL834688_random C 0 I 3
s ornAna1.Contig30778               2603  8 +      7217 ----T----------AAACATT-
i ornAna1.Contig30778          C 0 C 0
s cheMyd1.KB479743               1969948  7 +   4979691 ----C----------AACCTT--
i cheMyd1.KB479743             I 6 I 5
s xenTro7.KB021649              49599286  7 + 215906545 ----------------AATACTT
i xenTro7.KB021649             C 0 C 0
s danRer10.chr17                18110516  8 -  53345113 AAGAT----------AAA-----
i danRer10.chr17               C 0 C 0
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e vicPac2.KB632437              19211108 26 -  22931326 I
e camFer1.KB017763               2805505 26 -   6207710 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e astMex1.KB882153               1887684 6275 +   2696342 I
e oryLat2.chr22                 17713695 1652 -  28810691 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e ficAlb2.chr2                 148476154 152 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280129 197 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH739256                321407  0 -    882412 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                 97242 6566 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr22                 13571932  0 -  14786829 I
e anaPla1.KB742696               1244545 9705 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e chrPic2.chrUn_KK088237v1       5677291 6413 -  22294289 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530522886 8299 + 748055161 I
e taeGut2.chr3                  13879943 9148 - 112617285 I
e orcOrc1.KB316907              10841129  0 +  17242564 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21188098 1840 -  23169006 M
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=12681.000000
s hg38.chr8_KI270814v1_alt         85309 1 +    141812 T
s ponAbe2.chr8                  59054839 1 + 153482349 T
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48133444 1 + 100215132 T
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99340713 1 + 108792865 T
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24006880 1 +  27210278 T
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19211134 1 -  22931326 T
i vicPac2.KB632437             I 26 C 0
s camFer1.KB017763               2805531 1 -   6207710 T
i camFer1.KB017763             I 26 C 0
s equCab2.chr15                 84035355 1 +  91571448 T
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6808898 1 -  14545593 T
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134106033 1 + 140925898 T
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57839037 1 -  64289059 T
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13611309 1 -  19722643 T
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3034437 1 +   4816872 T
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19412140 1 -  23789964 T
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27619139 1 -  46401353 G
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9966580 1 +  24341844 T
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1033014 1 -   2788317 T
i dasNov3.JH567436             C 0 C 0
s sarHar1.chr1_GL834688_random    522819 1 +   3395230 C
i sarHar1.chr1_GL834688_random I 3 C 0
s ornAna1.Contig30778               2611 1 +      7217 T
i ornAna1.Contig30778          C 0 C 0
s xenTro7.KB021649              49599293 1 + 215906545 T
i xenTro7.KB021649             C 0 C 0
s danRer10.chr17                18110524 1 -  53345113 T
i danRer10.chr17               C 0 C 0
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e astMex1.KB882153               1887684 6275 +   2696342 I
e oryLat2.chr22                 17713695 1652 -  28810691 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e ficAlb2.chr2                 148476154 152 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221189              55280129 197 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH739256                321407 0 -    882412 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                 97242 6566 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr22                 13571932 0 -  14786829 I
e anaPla1.KB742696               1244545 9705 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1969955 5 +   4979691 I
e chrPic2.chrUn_KK088237v1       5677291 6413 -  22294289 I
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530522886 8299 + 748055161 I
e taeGut2.chr3                  13879943 9148 - 112617285 I
e orcOrc1.KB316907              10841129 0 +  17242564 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21188098 1840 -  23169006 M
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=225757.000000
s hg38.chr8_KI270814v1_alt         85310 30 +    141812 CAATGAACTTCC----------------CTGAAAAT---------AACATCCTAT
s ponAbe2.chr8                  59054840 30 + 153482349 CAATGAACTTCC----------------CTGAAAAT---------AACATCCTAT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48133445 30 + 100215132 CAATGAACTTCC----------------CTGAAAAT---------AACATCCTAT
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99340714 30 + 108792865 CAGTGAACTTTC----------------CTGAAAAT---------AACATCCTAT
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24006881 30 +  27210278 CAATGAACTTTC----------------CTGAAAAT---------AACATCCTAT
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19211135 30 -  22931326 CAATCAGCCTTC----------------CTGAACGC---------AACACTCTGT
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2805532 30 -   6207710 CAATCAGCCTTC----------------CTGAACGC---------AACGCTCTGT
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10841129 30 +  17242564 CAATTAACGTTC----------------CTGAAAAT---------AACATTCTGT
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84035356 30 +  91571448 CAACTCACTTTC----------------CTGGAAAT---------AATATTCTGT
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6808899 30 -  14545593 CAATTAACTTTC----------------CTGAAAAT---------AACATTCTGT
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134106034 30 + 140925898 CAATCAGCTTTC----------------CTGAAAAT---------AACCCTCTAC
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57839038 30 -  64289059 CAATTAGCTTTC----------------CTGAAAAT---------AACTTTCTGT
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13611310 30 -  19722643 CAAGTAGCTTTT----------------CTGAAAAT---------TACATTCTGT
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3034438 30 +   4816872 CAATGAGCTTTC----------------TTGAAAAT---------AACATTCTGT
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19412141 30 -  23789964 TCATTAACTTCC----------------CTGACAAT---------GACGTTCTGT
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27619140 29 -  46401353 CAATTACCTTTC----------------CTGAAACT----------ACATTCTAT
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9966581 30 +  24341844 CAATTACCTTTC----------------CTCAAAAT---------AACGTTCTAT
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1033015 30 -   2788317 CAATTAACTTTC----------------CTGTAAAA---------AACATTCTAC
i dasNov3.JH567436             C 0 C 0
s sarHar1.chr1_GL834688_random    522820 55 +   3395230 TAAtggcctcattttacagatgaagaaactgaagatcaaaGTAGAAAAGTGACTT
i sarHar1.chr1_GL834688_random C 0 C 0
s ornAna1.Contig30778               2612 27 +      7217 -GATTG--TAGC----------------CAATAAAA---------AATATCATGG
i ornAna1.Contig30778          C 0 C 0
s cheMyd1.KB479743               1969960 31 +   4979691 TGAGAAATGTTC----------------TGGAACAC--------AAACATTTAAT
i cheMyd1.KB479743             I 5 C 0
s xenTro7.KB021649              49599294 26 + 215906545 -ACCTCAGGtac----------------ccatgagc---------cacattc---
i xenTro7.KB021649             C 0 C 0
s danRer10.chr17                18110525 30 -  53345113 AGATTACCCTTT----------------CAGTAAAG---------AATGTCCCTT
i danRer10.chr17               C 0 C 0
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e astMex1.KB882153               1887684 6275 +   2696342 I
e oryLat2.chr22                 17713695 1652 -  28810691 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e ficAlb2.chr2                 148476154 152 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280129 197 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH739256                321407  0 -    882412 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                 97242 6566 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr22                 13571932  0 -  14786829 I
e anaPla1.KB742696               1244545 9705 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e chrPic2.chrUn_KK088237v1       5677291 6413 -  22294289 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530522886 8299 + 748055161 I
e taeGut2.chr3                  13879943 9148 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21188098 1840 -  23169006 M
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=81654.000000
s hg38.chr8_KI270814v1_alt         85340 13 +    141812 AACC----------ACTGTGACA
s ponAbe2.chr8                  59054870 13 + 153482349 AACC----------ACTATGACA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48133475 13 + 100215132 AACC----------ACTATGACA
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99340744 13 + 108792865 AACC----------ACTATGACA
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24006911 13 +  27210278 AACC----------ACTATGACA
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19211165 13 -  22931326 AGCC----------ATCCTCTAA
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2805562 10 -   6207710 AGCC----------ATCCTC---
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10841159 13 +  17242564 AGCC----------ATTGGGACA
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84035386 13 +  91571448 AACC----------ATTATGACA
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6808929 13 -  14545593 AACC----------ATTATGACA
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134106064 13 + 140925898 ACCC----------GTGATGACA
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57839068 13 -  64289059 AACC----------ATTATGACA
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13611340 13 -  19722643 AACC----------ATTATGACA
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3034468 13 +   4816872 AACC----------ATTATGACA
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19412171 13 -  23789964 AACC----------ATTCGGACA
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27619169 13 -  46401353 AACC----------ATTGTGATA
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9966611 13 +  24341844 AATC----------ACTGTGACA
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1033045 13 -   2788317 AACC----------ACCCTGACA
i dasNov3.JH567436             C 0 C 0
s sarHar1.chr1_GL834688_random    522875  8 +   3395230 ACCC----------GTAG-----
i sarHar1.chr1_GL834688_random C 0 C 0
s ornAna1.Contig30778               2639 23 +      7217 CATCAGAAGGAGAAACTGTTACA
i ornAna1.Contig30778          C 0 I 12
s cheMyd1.KB479743               1969991 13 +   4979691 CCCC----------ACTACACCC
i cheMyd1.KB479743             C 0 C 0
s xenTro7.KB021649              49599320 13 + 215906545 aaac----------ataaaaaaa
i xenTro7.KB021649             C 0 I 2
s oryLat2.chr22                 17715347 13 -  28810691 AATC----------ACTGGGGGA
i oryLat2.chr22                I 1652 I 2
s danRer10.chr17                18110555 12 -  53345113 -GCA----------GCTTGGAAA
i danRer10.chr17               C 0 I 2
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e astMex1.KB882153               1887684 6275 +   2696342 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e ficAlb2.chr2                 148476154 152 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280129 197 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH739256                321407  0 -    882412 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                 97242 6566 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr22                 13571932  0 -  14786829 I
e anaPla1.KB742696               1244545 9705 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e chrPic2.chrUn_KK088237v1       5677291 6413 -  22294289 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530522886 8299 + 748055161 I
e taeGut2.chr3                  13879943 9148 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21188098 1840 -  23169006 M
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=38666.000000
s hg38.chr8_KI270814v1_alt         85353 6 +    141812 TTATAG
s ponAbe2.chr8                  59054883 6 + 153482349 TTATAG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48133488 6 + 100215132 TTATAG
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99340757 6 + 108792865 TCATAG
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24006924 6 +  27210278 TCATAG
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19211178 6 -  22931326 GAACAG
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2805572 3 -   6207710 ---AAG
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10841172 6 +  17242564 CAAGAG
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84035399 6 +  91571448 TAATAG
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6808942 6 -  14545593 TAACAG
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134106077 6 + 140925898 TAACAG
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57839081 6 -  64289059 TCACAG
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13611353 6 -  19722643 TTGCAG
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3034481 6 +   4816872 TCACAG
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19412184 4 -  23789964 TA--AG
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27619182 6 -  46401353 TAACGG
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9966624 6 +  24341844 TAATGG
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1033058 6 -   2788317 TAACAG
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530531185 6 + 748055161 tcatac
i monDom5.chr1                 I 8299 C 0
s sarHar1.chr1_GL834688_random    522883 6 +   3395230 TCATAA
i sarHar1.chr1_GL834688_random C 0 C 0
s ornAna1.Contig30778               2674 6 +      7217 TAATAG
i ornAna1.Contig30778          I 12 C 0
s cheMyd1.KB479743               1970004 6 +   4979691 TCATTG
i cheMyd1.KB479743             C 0 C 0
s xenTro7.KB021649              49599335 6 + 215906545 caaaag
i xenTro7.KB021649             I 2 C 0
s oryLat2.chr22                 17715362 6 -  28810691 TTTTAG
i oryLat2.chr22                I 2 C 0
s danRer10.chr17                18110569 6 -  53345113 ATATAA
i danRer10.chr17               I 2 C 0
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e astMex1.KB882153               1887684 6275 +   2696342 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e ficAlb2.chr2                 148476154 152 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221189              55280129 197 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH739256                321407 0 -    882412 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                 97242 6566 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr22                 13571932 0 -  14786829 I
e anaPla1.KB742696               1244545 9705 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e chrPic2.chrUn_KK088237v1       5677291 6413 -  22294289 I
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr3                  13879943 9148 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21188098 1840 -  23169006 M
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-52221.000000
s hg38.chr8_KI270814v1_alt         85359  6 +    141812 A-------AAAAG--
s ponAbe2.chr8                  59054889  6 + 153482349 A-------AAAAG--
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48133494  6 + 100215132 A-------AAAAG--
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99340763  6 + 108792865 A-------AAAAG--
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24006930  6 +  27210278 A-------AAAAG--
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19211184  3 -  22931326 ----------GAG--
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2805575  3 -   6207710 ----------GAG--
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10841178  3 +  17242564 ----------GAG--
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84035405  4 +  91571448 ---------AAAG--
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6808948  4 -  14545593 ---------AAAG--
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134106083  5 + 140925898 --------AAAAG--
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57839087  5 -  64289059 --------AAAAG--
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13611359  5 -  19722643 --------AAAAG--
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3034487  5 +   4816872 --------AAAAG--
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19412188  5 -  23789964 --------GAAAG--
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27619188  5 -  46401353 --------AAAAG--
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9966630  5 +  24341844 --------AAAAG--
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1033064  5 -   2788317 --------AAAAG--
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530531191  2 + 748055161 -----------aa--
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    522889  2 +   3395230 -----------AG--
i sarHar1.chr1_GL834688_random C 0 C 0
s ornAna1.Contig30778               2680 13 +      7217 GGGCATCTCTAAC--
i ornAna1.Contig30778          C 0 C 0
s melGal1.chr3                  91313525  6 + 100405168 -------AAAAAA--
i melGal1.chr3                 I 1943 C 0
s cheMyd1.KB479743               1970010  5 +   4979691 --------GTAAA--
i cheMyd1.KB479743             C 0 I 2
s xenTro7.KB021649              49599341  6 + 215906545 -------caacac--
i xenTro7.KB021649             C 0 C 0
s oryLat2.chr22                 17715368  6 -  28810691 ---------AAGGTG
i oryLat2.chr22                C 0 C 0
s danRer10.chr17                18110575  6 -  53345113 ---------AAAGTG
i danRer10.chr17               C 0 C 0
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e astMex1.KB882153               1887684 6275 +   2696342 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e ficAlb2.chr2                 148476154 152 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280129 197 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH739256                321407  0 -    882412 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                 97242 6566 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e anaPla1.KB742696               1244545 9705 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e chrPic2.chrUn_KK088237v1       5677291 6413 -  22294289 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr3                  13879943 9148 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21188098 1840 -  23169006 M
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=32437.000000
s hg38.chr8_KI270814v1_alt         85365 14 +    141812 GAGCAGGAA--AAAA-C
s ponAbe2.chr8                  59054895 14 + 153482349 GAGCAGGAA--AAAA-C
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48133500 14 + 100215132 GAGCAGGAA--AAAA-C
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99340769 14 + 108792865 GAAGAGGGG--AAGA-C
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24006936 14 +  27210278 GAACAGGGG--AAGA-C
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19211187 14 -  22931326 GAACGAGGC--GAAA-G
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2805578 14 -   6207710 GAATGAGGC--GAAA-G
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10841181 14 +  17242564 GGATGAGGA--AAAA-A
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84035409 14 +  91571448 GAACAAGGA--AAAA-T
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6808952 14 -  14545593 GGACAAGGA--AAAA-C
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134106088 14 + 140925898 AGACCAGGA--ACAA-C
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57839092 14 -  64289059 GGACCAGGA--GAAA-C
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13611364 14 -  19722643 GGACCAGGA--AAAA-C
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3034492 14 +   4816872 GGACCAGGA--AAAA-C
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19412193 14 -  23789964 GGACGAGGA--AACA-C
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27619193 13 -  46401353 GGACAAGG---GAAA-C
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9966635 13 +  24341844 GGACACGG---GAAA-C
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1033069 13 -   2788317 GGACAAGG---GAAA-A
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530531193 14 + 748055161 gaataagca--gaac-c
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    522891 14 +   3395230 GAATAGGCA--GAAC-C
i sarHar1.chr1_GL834688_random C 0 C 0
s ornAna1.Contig30778               2693 14 +      7217 AAATAAGTA--GTAC-A
i ornAna1.Contig30778          C 0 C 0
s melGal1.chr3                  91313531 14 + 100405168 AAACAACAA--ACAAC-
i melGal1.chr3                 C 0 C 0
s cheMyd1.KB479743               1970017 13 +   4979691 AAATAAAAC--AAAT--
i cheMyd1.KB479743             I 2 C 0
s chrPic2.chrUn_KK088237v1       5683704 15 -  22294289 GAACAAGAATGAAAG--
i chrPic2.chrUn_KK088237v1     I 6413 C 0
s xenTro7.KB021649              49599347 14 + 215906545 aagcatgca--aaaa-c
i xenTro7.KB021649             C 0 C 0
s oryLat2.chr22                 17715374 10 -  28810691 --GTGCTGC--AAA---
i oryLat2.chr22                C 0 C 0
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e danRer10.chr17                18110581  0 -  53345113 C
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e astMex1.KB882153               1887684 6275 +   2696342 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e ficAlb2.chr2                 148476154 152 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280129 197 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH739256                321407  0 -    882412 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                 97242 6566 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e anaPla1.KB742696               1244545 9705 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr3                  13879943 9148 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21188098 1840 -  23169006 M
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-6282.000000
s hg38.chr8_KI270814v1_alt         85379 1 +    141812 T
s ponAbe2.chr8                  59054909 1 + 153482349 T
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48133514 1 + 100215132 T
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99340783 1 + 108792865 A
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24006950 1 +  27210278 A
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19211201 1 -  22931326 C
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2805592 1 -   6207710 C
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10841195 1 +  17242564 C
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84035423 1 +  91571448 G
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6808966 1 -  14545593 T
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134106102 1 + 140925898 T
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57839106 1 -  64289059 T
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13611378 1 -  19722643 T
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3034506 1 +   4816872 T
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19412207 1 -  23789964 A
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27619206 1 -  46401353 T
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9966648 1 +  24341844 T
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1033082 1 -   2788317 T
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530531207 1 + 748055161 a
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    522905 1 +   3395230 A
i sarHar1.chr1_GL834688_random C 0 C 0
s ornAna1.Contig30778               2707 1 +      7217 A
i ornAna1.Contig30778          C 0 C 0
s xenTro7.KB021649              49599361 1 + 215906545 t
i xenTro7.KB021649             C 0 n 0
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e danRer10.chr17                18110581 0 -  53345113 C
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e astMex1.KB882153               1887684 6275 +   2696342 I
e oryLat2.chr22                 17715384 0 -  28810691 C
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e ficAlb2.chr2                 148476154 152 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221189              55280129 197 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH739256                321407 0 -    882412 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                 97242 6566 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr3                  91313545 0 + 100405168 C
e anaPla1.KB742696               1244545 9705 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1970030 0 +   4979691 C
e chrPic2.chrUn_KK088237v1       5683719 0 -  22294289 C
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr3                  13879943 9148 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21188098 1840 -  23169006 M
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-839311.000000
s hg38.chr8_KI270814v1_alt         85380 28 +    141812 GG-T-TAAAAT--AAT--AT---AGCATCA----------CTG----------------------------AACA---------
s ponAbe2.chr8                  59054910 28 + 153482349 GG-T-TAAAAT--AAT--AT---AGCATCA----------CTG----------------------------AACA---------
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48133515 28 + 100215132 GG-T-TAAAAT--AAT--GT---AGCATCA----------CTG----------------------------AACA---------
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99340784 28 + 108792865 GA-T-TAAAAG--AAG--AC---AGTGCCA----------CCA----------------------------AACA---------
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24006951 28 +  27210278 GA-T-TAAAAG--AAG--AC---AGTGCCA----------CCA----------------------------AACA---------
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19211202 37 -  22931326 CC-TGTTAAAG--AGG--TT---TACATC--------------------------AC-ACCGG---GTGTGAAAG---------
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2805593 36 -   6207710 CC-TGTTAAAG--A-G--TT---TACATC--------------------------AC-ACCAG---GTGTGAAAG---------
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10841196 46 +  17242564 AG-T-TTAAAG--AGG--TT---GACATCA-----------TG-A----ATGTGGAC-ATCCG---GTATGAAAG---------
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84035424 47 +  91571448 TG-T-TTAAAG--AGG--TT---AACATCA----------TTG-A----ATTTAGAC-ACCAA---CTATGAAAG---------
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6808967 46 -  14545593 TA-T-TTAAAG--A-G--TC---AACATCA----------TGG-A----ATTTAGAC-ACCAA---GTATGAAAG---------
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134106103 50 + 140925898 TG-T-TTGAAG--AGG--TCCAGGGCGTCG----------CTG-A----ATTTAGAC-ACCGA---GTATGGAAG---------
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57839107 51 -  64289059 CG---TTGAAG--AGGTCCCCCTAGCTTCG----------CTA-A----ATTTAGAC-ACCGA---GTGTGAAAG---------
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13611379 49 -  19722643 CG---CTGAAG--AGG--CCCATAGTACTG----------CTG-A----ATTCAGAC-GCCGA---GTGTGAAAG---------
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3034507 51 +   4816872 CG-T-TTGAAG--AGG--TCCACGGCATCA----------CTGAA----ATTTAGAC-ACCGA---GTGTGAAAG---------
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19412208 45 -  23789964 CG-T-TT--AG--AAG--AT---AACATCG----------CCG-A----ATTTAGAC-GCCGG---GTATGAAAA---------
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27619207 48 -  46401353 TG-T-TTAAAG--GAG--TT---AATATAC----------CTG-A----ATCTGGACAACCAA---CTTTGGAAA---------
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9966649 43 +  24341844 TG-T-TTAAAG------------AATATAA----------TTG-A----ATCTGGACAACAAA---CTTGGGAAG---------
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1033083 52 -   2788317 CG-T-TTAGAG--AAG--TT---AACCCCA----------ATG-AATTTATTTAGAAAATCAA---GTACAGAAG---------
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530531208 38 + 748055161 gaat-ttgaacccaagtctt---aacttcaaatTACTCCTCT------------------------------------------
i monDom5.chr1                 C 0 I 2
s sarHar1.chr1_GL834688_random    522906 36 +   3395230 AACT-TTGAAGCCAAA--CT---AACTTCAAAATGCTCCTCA------------------------------------------
i sarHar1.chr1_GL834688_random C 0 I 2
s ornAna1.Contig30778               2708  8 +      7217 TA-C-TGAAG--------------------------------------------------------------------------
i ornAna1.Contig30778          C 0 C 0
s ficAlb2.chr2                 148476306  8 + 157563209 -------------------------------------------------------------------TGgggaaa---------
i ficAlb2.chr2                 I 152 I 13
s melGal1.chr3                  91313545  3 + 100405168 ------------------------------------------------------------------------AAA---------
i melGal1.chr3                 C 0 I 21
s cheMyd1.KB479743               1970030  8 +   4979691 -------------------------------------------------------------------TCCTTGCA---------
i cheMyd1.KB479743             C 0 I 21
s chrPic2.chrUn_KK088237v1       5683719  8 -  22294289 -------------------------------------------------------------------TCCAAGAA---------
i chrPic2.chrUn_KK088237v1     C 0 I 20
s oryLat2.chr22                 17715384 25 -  28810691 -----------------------------------------------------------TAGAGAACAGCAGAAACAGCAAATT
i oryLat2.chr22                C 0 C 0
s danRer10.chr17                18110581 16 -  53345113 ------------------------------------------------------------------CTACATAAATGTC--ATA
i danRer10.chr17               C 0 C 0
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e xenTro7.KB021649              49599362  0 + 215906545 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e astMex1.KB882153               1887684 6275 +   2696342 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280129 197 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH739256                321407  0 -    882412 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                 97242 6566 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e anaPla1.KB742696               1244545 9705 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr3                  13879943 9148 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21188098 1840 -  23169006 M
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=63896.000000
s hg38.chr8_KI270814v1_alt         85408 4 +    141812 TATC
s ponAbe2.chr8                  59054938 4 + 153482349 TATC
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48133543 4 + 100215132 TAGT
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99340812 4 + 108792865 CATC
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24006979 4 +  27210278 CATC
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19211239 4 -  22931326 CACC
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2805629 4 -   6207710 CACC
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10841242 4 +  17242564 CATC
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84035471 4 +  91571448 CATT
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6809013 4 -  14545593 CATC
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134106153 4 + 140925898 CATC
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57839158 4 -  64289059 CATT
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13611428 4 -  19722643 CATC
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3034558 4 +   4816872 CATC
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19412253 4 -  23789964 CATC
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27619255 4 -  46401353 CATT
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9966692 4 +  24341844 CATT
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1033135 4 -   2788317 CACA
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530531248 4 + 748055161 TATC
i monDom5.chr1                 I 2 C 0
s sarHar1.chr1_GL834688_random    522944 4 +   3395230 TATC
i sarHar1.chr1_GL834688_random I 2 C 0
s macEug2.GL109592                103808 4 -    117391 TATC
i macEug2.GL109592             I 6566 C 0
s ornAna1.Contig30778               2716 4 +      7217 CATC
i ornAna1.Contig30778          C 0 C 0
s ficAlb2.chr2                 148476327 4 + 157563209 tatt
i ficAlb2.chr2                 I 13 C 0
s melGal1.chr3                  91313569 4 + 100405168 TATT
i melGal1.chr3                 I 21 C 0
s cheMyd1.KB479743               1970059 4 +   4979691 TATC
i cheMyd1.KB479743             I 21 I 14630
s chrPic2.chrUn_KK088237v1       5683747 4 -  22294289 AGTC
i chrPic2.chrUn_KK088237v1     I 20 I 2
s oryLat2.chr22                 17715409 4 -  28810691 CTCT
i oryLat2.chr22                C 0 C 0
s danRer10.chr17                18110597 4 -  53345113 CATT
i danRer10.chr17               C 0 C 0
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e xenTro7.KB021649              49599362 0 + 215906545 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e astMex1.KB882153               1887684 6275 +   2696342 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221189              55280129 197 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH739256                321407 0 -    882412 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e anaPla1.KB742696               1244545 9705 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr3                  13879943 9148 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21188098 1840 -  23169006 M
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=50653.000000
s hg38.chr8_KI270814v1_alt         85412 7 +    141812 -TGTCATC-
s ponAbe2.chr8                  59054942 7 + 153482349 -TGTCATC-
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48133547 7 + 100215132 -CGTCATC-
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99340816 7 + 108792865 -TGTCATC-
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24006983 7 +  27210278 -TGTCATC-
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19211243 7 -  22931326 -TGGCATC-
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2805633 7 -   6207710 -TGGCATC-
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10841246 7 +  17242564 -TGGTATC-
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84035475 7 +  91571448 -TGGCATG-
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6809017 7 -  14545593 -TGGCATC-
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134106157 4 + 140925898 -TGGC----
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57839162 7 -  64289059 -TGGCATC-
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13611432 7 -  19722643 -TGGCCTC-
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3034562 7 +   4816872 -TGGCATC-
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19412257 7 -  23789964 -TGGCATT-
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27619259 7 -  46401353 -TGGCATC-
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9966696 7 +  24341844 -TGGCATC-
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1033139 7 -   2788317 -TAGTATC-
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530531252 7 + 748055161 -TGATGTC-
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    522948 7 +   3395230 -TGACAAC-
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL109592                103812 7 -    117391 -TGACATC-
i macEug2.GL109592             C 0 C 0
s ornAna1.Contig30778               2720 7 +      7217 -TAGCATC-
i ornAna1.Contig30778          C 0 C 0
s ficAlb2.chr2                 148476331 7 + 157563209 -aataata-
i ficAlb2.chr2                 C 0 I 6
s melGal1.chr3                  91313573 7 + 100405168 -TAGTTTT-
i melGal1.chr3                 C 0 I 7
s chrPic2.chrUn_KK088237v1       5683753 7 -  22294289 -AGTCATC-
i chrPic2.chrUn_KK088237v1     I 2 I 2
s oryLat2.chr22                 17715413 8 -  28810691 GTT-CATTA
i oryLat2.chr22                C 0 C 0
s danRer10.chr17                18110601 9 -  53345113 GTTGCATGC
i danRer10.chr17               C 0 C 0
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e xenTro7.KB021649              49599362 0 + 215906545 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e astMex1.KB882153               1887684 6275 +   2696342 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221189              55280129 197 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH739256                321407 0 -    882412 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e anaPla1.KB742696               1244545 9705 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1970063 14630 +   4979691 I
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr3                  13879943 9148 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21188098 1840 -  23169006 M
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-9649.000000
s hg38.chr8_KI270814v1_alt         85419 15 +    141812 AAAACA---AACC---------ACAGT
s ponAbe2.chr8                  59054949 15 + 153482349 AAAACA---AACC---------ACAGT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48133554 15 + 100215132 AAAACA---AACC---------ACAGT
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99340823 15 + 108792865 AAAACA---AACC---------ACAGC
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24006990 15 +  27210278 AAAACA---AACC---------ACAGC
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19211250 15 -  22931326 GTAACA---AACC---------ACAGC
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2805640 15 -   6207710 GTAACA---AACC---------ACAGC
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10841253 15 +  17242564 AAAACA---AACC---------ACAGC
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84035482 14 +  91571448 CTAACA----ATC---------ACAGC
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6809024 15 -  14545593 CTAACA---TACC---------ACAGC
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134106161 12 + 140925898 ---ACA---AACC---------ACAGC
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57839169 15 -  64289059 ATAACG---GACC---------ACAGC
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13611439 15 -  19722643 GTCATG---AACC---------CCAGC
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3034569 15 +   4816872 GTAATG---AACC---------ACAGC
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19412264 15 -  23789964 GTAATG---AACC---------ACAGC
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27619266 15 -  46401353 ATACCA---AATC---------ACGGC
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9966703 15 +  24341844 ATAACA---AACC---------ATGGC
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1033146 15 -   2788317 ATAACA---AACC---------ACAGC
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530531259 17 + 748055161 A-AAAGTATAACC---------ACAGT
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    522955 18 +   3395230 ACAATGCATAACC---------ACAGC
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL109592                103819 18 -    117391 ACAAAGCATAACC---------ACAGC
i macEug2.GL109592             C 0 C 0
s ornAna1.Contig30778               2727 24 +      7217 ACTACG---AACTGGATGGAAAACAAA
i ornAna1.Contig30778          C 0 C 0
s ficAlb2.chr2                 148476344  5 + 157563209 ctaat----------------------
i ficAlb2.chr2                 I 6 C 0
s pseHum1.KB221189              55280326  5 -  63311091 ataat----------------------
i pseHum1.KB221189             I 197 C 0
s melGal1.chr3                  91313587  5 + 100405168 CAGAT----------------------
i melGal1.chr3                 I 7 C 0
s chrPic2.chrUn_KK088237v1       5683762  5 -  22294289 CCAAA----------------------
i chrPic2.chrUn_KK088237v1     I 2 I 3
s oryLat2.chr22                 17715421 15 -  28810691 GAAACA---AGCT---------CCAAT
i oryLat2.chr22                C 0 C 0
s danRer10.chr17                18110610 12 -  53345113 TGAACA---A------------TCAGT
i danRer10.chr17               C 0 C 0
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e xenTro7.KB021649              49599362  0 + 215906545 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e astMex1.KB882153               1887684 6275 +   2696342 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH739256                321407  0 -    882412 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e anaPla1.KB742696               1244545 9705 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1970063 14630 +   4979691 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr3                  13879943 9148 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21188098 1840 -  23169006 M
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-212754.000000
s hg38.chr8_KI270814v1_alt         85434 28 +    141812 --------AATATAG--TTGACA----AA------------AA-----TTCTGGATTA-----A
s ponAbe2.chr8                  59054964 28 + 153482349 --------AATATGG--TTGACA----AA------------AA-----TTCTGGATTA-----A
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48133569 28 + 100215132 --------AATATGG--TTGACA----AA------------AA-----TTCTGGATTA-----A
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99340838 33 + 108792865 --------AACAGGA--TTGATA----AA------------AATTCTTTTCTGGATTA-----A
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24007005 33 +  27210278 --------AACAGGA--TTGATA----AA------------AATTATTTTCTGGATTA-----A
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19211265 34 -  22931326 --------AACACAG-TCTGGGG----TG------------AATTCTTTCCTGGATTA-----A
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2805655 34 -   6207710 --------AACACAG-TTTGGGG----TG------------AGTTCTTTCCTGGATTA-----A
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10841268 34 +  17242564 --------AACACAG-TTTTGGG----TG------------AATTCTTTCCTGGATTA-----A
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84035496 33 +  91571448 --------AACACTG-TTCT-AA----TG------------AATTCTTTCCTTGATTA-----A
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6809039 33 -  14545593 --------AATACAG-TTCT-GG----TG------------AATTCTTTCCTGGATTA-----A
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134106173 34 + 140925898 --------AAGACGG-TTTTAAG----GG------------AATTCGTCCCTGGGTTA-----A
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57839184 34 -  64289059 --------AACACAG-GTTTAAG----TG------------AAGTCTCCCCTAGGTTA-----A
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13611454 34 -  19722643 --------AACATGG-GTTTAAG----TG------------GATTCTTCCCTAGGCAA-----A
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3034584 34 +   4816872 --------AACACGG-GTTTAAG----TG------------AATTCTTCCCTGGCTAA-----A
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19412279 34 -  23789964 --------AACACAG-TTTTAGG----TG------------AATTCTTTTCTGGATTA-----A
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27619281 34 -  46401353 --------AACATGG-TTTTAGG----CA------------AATCCTTTCCTGGATTA-----A
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9966718 34 +  24341844 --------AACATGG-TTTTAGA----TA------------AATTCTTTCTTGGATTA-----A
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1033161 38 -   2788317 --------ATTATAG-CTTTAGGTAAATA------------AATTCCTTTCTGAATTA-----G
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530531276 28 + 748055161 --------AAAAGGG-------A----TA------------CATTCCTCCCTGAACTA-----A
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    522973 28 +   3395230 --------AAAGTGG-------A----TA------------TTTTCCTCCCTGAAATA-----A
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL109592                103837 28 -    117391 --------ACTACAG-------A----TA------------CTTTGCTCCATGGAGTA-----A
i macEug2.GL109592             C 0 C 0
s ornAna1.Contig30778               2751 35 +      7217 --------AGAATAGGTTCTAGA----CA------------AAGTTTTCCCTAGATCA-----A
i ornAna1.Contig30778          C 0 C 0
s ficAlb2.chr2                 148476349 19 + 157563209 ---------------------------aa------------tggc------aatactgttacta
i ficAlb2.chr2                 C 0 I 5
s pseHum1.KB221189              55280331 25 -  63311091 ---------------------------ta------------tatCTTAATTAACaatactacta
i pseHum1.KB221189             C 0 I 5
s anaPla1.KB742696               1254250  7 -   1270250 ----------------------------------------------------aaaata-----a
i anaPla1.KB742696             I 9705 I 18
s melGal1.chr3                  91313592  7 + 100405168 ----------------------------------------------------AAAGTA-----C
i melGal1.chr3                 C 0 I 41
s chrPic2.chrUn_KK088237v1       5683770  7 -  22294289 ----------------------------------------------------AAGATA-----A
i chrPic2.chrUn_KK088237v1     I 3 I 22
s oryLat2.chr22                 17715436 24 -  28810691 GTCAGA-GAACATAA------AT----AG------------AATTCC-----------------
i oryLat2.chr22                C 0 C 0
s danRer10.chr17                18110622 37 -  53345113 GTGAGAGGAATACAG------GA----AGTGAGGTGGCAACAGTGAC-----------------
i danRer10.chr17               C 0 C 0
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e xenTro7.KB021649              49599362  0 + 215906545 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e astMex1.KB882153               1887684 6275 +   2696342 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH739256                321407  0 -    882412 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1970063 14630 +   4979691 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr3                  13879943 9148 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21188098 1840 -  23169006 M
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=62656.000000
s hg38.chr8_KI270814v1_alt         85462 20 +    141812 ---GGCTCATTT-AGAAAATCCCT
s ponAbe2.chr8                  59054992 20 + 153482349 ---GGCTCGTTT-AGAAAATCCCT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48133597 20 + 100215132 ---GGCTCGTTT-AGAAAATCCCT
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99340871 20 + 108792865 ---AGTTTAGTT-AGACAATCCCT
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24007038 20 +  27210278 ---GGTTTAGTT-AGACAATCCCT
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19211299 20 -  22931326 ---GGTTTATTT-AGACAATACTT
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2805689 20 -   6207710 ---GGTTTATTT-AGACAATACCT
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10841302 20 +  17242564 ---GGTTTATTT-AGACAATACCT
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84035529 20 +  91571448 ---GGTTTCTTT-AGACAATACCT
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6809072 20 -  14545593 ---GGTTTATTT-AGATAATACCT
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134106207 21 + 140925898 ---GGTTTATTTAAGAAAATACCT
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57839218 20 -  64289059 ---GGTTTATTT-AAAAAATACCT
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13611488 20 -  19722643 ---GGTTTATTT-AGAAAATACCT
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3034618 20 +   4816872 ---GGTTTATTT-AGAAAATACCT
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19412313 20 -  23789964 ---GATTTACTT-AGACAATACCT
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27619315 20 -  46401353 ---AGTTTATTT-AGACAATATCG
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9966752 20 +  24341844 ---GGTTTATTC-AGACAATACTG
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1033199 20 -   2788317 ---GATGTATTT-GAATAACATCT
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530531304 13 + 748055161 ---GCACTGTCT---AAAA-----
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    523001 18 +   3395230 ---TTATTACTT---AAAATCCCT
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL109592                103865 18 -    117391 ---TCACTTTCT---AAAATCCCT
i macEug2.GL109592             C 0 C 0
s ornAna1.Contig30778               2786 18 +      7217 ---TCCCTGATC---CCTATCCTT
i ornAna1.Contig30778          C 0 C 0
s ficAlb2.chr2                 148476373 19 + 157563209 ---aattcattt-taaaaa-cccg
i ficAlb2.chr2                 I 5 I 5
s pseHum1.KB221189              55280361 20 -  63311091 ---aattcattt-taaaaatccca
i pseHum1.KB221189             I 5 I 5
s anaPla1.KB742696               1254275 19 -   1270250 ---ACTTCTTTC-TGGGAC-CTTA
i anaPla1.KB742696             I 18 C 0
s chrPic2.chrUn_KK088237v1       5683799 12 -  22294289 ------TAATCA-TCAAGG-----
i chrPic2.chrUn_KK088237v1     I 22 I 5
s oryLat2.chr22                 17715460 20 -  28810691 GAATGGTTACTT-CAAGGGTT---
i oryLat2.chr22                C 0 I 13
s danRer10.chr17                18110659 20 -  53345113 AGCTCGTTATCC-AGAGTGCT---
i danRer10.chr17               C 0 I 33
e xipMac1.JH556722                319043 1539 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e xenTro7.KB021649              49599362  0 + 215906545 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e astMex1.KB882153               1887684 6275 +   2696342 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH739256                321407  0 -    882412 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr3                  91313599 41 + 100405168 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1970063 14630 +   4979691 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr3                  13879943 9148 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21188098 1840 -  23169006 M
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=57314.000000
s hg38.chr8_KI270814v1_alt         85482 19 +    141812 TTAAGTAA-TAAAAGCTTGG
s ponAbe2.chr8                  59055012 19 + 153482349 TTAAGTAA-TAAAAGCTTGG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48133617 19 + 100215132 GTAAGTAA-TAAAAGCTTGG
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99340891 19 + 108792865 TTAAGCAA-TGAAAGCTTGG
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24007058 19 +  27210278 TTAAGCAA-TAAAAGCTTGG
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19211319 19 -  22931326 TAACACAA-TAAAAGCTCCA
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2805709 19 -   6207710 TTACGCAA-TAAAAGCTCCA
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10841322 19 +  17242564 TTAAGCAA-TAAAGGCTCGA
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84035549 19 +  91571448 TCAAGCAA-TAAAAGCTCGA
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6809092 19 -  14545593 TTAAGCAA-TAAAAGCTCGA
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134106228 20 + 140925898 TTAAGCTATTAAAAGCTCAG
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57839238 19 -  64289059 TTGAGCCA-TAAAAGCTCAA
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13611508 19 -  19722643 TCAAGCAA-TTAAAGCTCAA
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3034638 19 +   4816872 TCAAGCAA-TAAAAGCTCAA
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19412333 19 -  23789964 TTAAGTGA-TAAAAGCTCAA
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27619335 19 -  46401353 TTAAATAA-TAAAAGCAGGA
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9966772 19 +  24341844 TTAAGTAA-TAAAAGCAGGA
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1033219 19 -   2788317 TTAAGCAA-TAAAATCTTAA
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530531317 17 + 748055161 -TGAG-AA-CTACAGCTCAA
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    523019 18 +   3395230 TTGAA-AA-CTACAGCTCAG
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL109592                103883 18 -    117391 TTGAG-GA-CTACAGTTCAG
i macEug2.GL109592             C 0 C 0
s ornAna1.Contig30778               2804 13 +      7217 TAAAGAAA-T------TCAG
i ornAna1.Contig30778          C 0 C 0
s ficAlb2.chr2                 148476397 15 + 157563209 acaaaaaa-caaagcc----
i ficAlb2.chr2                 I 5 C 0
s pseHum1.KB221189              55280386 15 -  63311091 acaaaaaa-caaaacc----
i pseHum1.KB221189             I 5 C 0
s anaPla1.KB742696               1254294 19 -   1270250 ATACTAAA-TAACGACCTTT
i anaPla1.KB742696             C 0 C 0
s melGal1.chr3                  91313640 19 + 100405168 GGAGAGAG-AGAAGGTCTTT
i melGal1.chr3                 I 41 C 0
s chrPic2.chrUn_KK088237v1       5683816 19 -  22294289 ACATAAAA-GGTTTCCCTTC
i chrPic2.chrUn_KK088237v1     I 5 C 0
s oryLat2.chr22                 17715493  9 -  28810691 TTGAAAGa-t----------
i oryLat2.chr22                I 13 I 6
s xipMac1.JH556722                320582  9 -   2306555 ttagttta-t----------
i xipMac1.JH556722             I 1539 I 4
s danRer10.chr17                18110712  9 -  53345113 TTAATTAA-T----------
i danRer10.chr17               I 33 I 16
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e lepOcu1.chrLG1                19988034 2833 -  69065196 I
e xenTro7.KB021649              49599362  0 + 215906545 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e astMex1.KB882153               1887684 6275 +   2696342 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH739256                321407  0 -    882412 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1970063 14630 +   4979691 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr3                  13879943 9148 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21188098 1840 -  23169006 M
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-34991.000000
s hg38.chr8_KI270814v1_alt         85501 4 +    141812 TTT-A---
s ponAbe2.chr8                  59055031 4 + 153482349 TTT-A---
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48133636 4 + 100215132 TTT-A---
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99340910 4 + 108792865 TTT-A---
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24007077 4 +  27210278 TTT-A---
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19211338 4 -  22931326 TTT-A---
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2805728 4 -   6207710 TTT-A---
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10841341 4 +  17242564 TTT-A---
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84035568 4 +  91571448 TCT-G---
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6809111 4 -  14545593 TTC-A---
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134106248 4 + 140925898 TTT-A---
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57839257 4 -  64289059 TTT-A---
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13611527 4 -  19722643 TTT-A---
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3034657 4 +   4816872 TTT-A---
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19412352 4 -  23789964 TTT-A---
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27619354 4 -  46401353 TTT-A---
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9966791 4 +  24341844 TTT-A---
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1033238 4 -   2788317 TTT-A---
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530531334 4 + 748055161 CTT-T---
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    523037 4 +   3395230 ATT-T---
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL109592                103901 4 -    117391 CTT-T---
i macEug2.GL109592             C 0 C 0
s ornAna1.Contig30778               2817 4 +      7217 TTT-T---
i ornAna1.Contig30778          C 0 C 0
s anaPla1.KB742696               1254313 3 -   1270250 TCC-----
i anaPla1.KB742696             C 0 I 39
s melGal1.chr3                  91313659 3 + 100405168 TCC-----
i melGal1.chr3                 C 0 I 21
s chrPic2.chrUn_KK088237v1       5683835 4 -  22294289 TCTG----
i chrPic2.chrUn_KK088237v1     C 0 I 6
s oryLat2.chr22                 17715508 4 -  28810691 ----aata
i oryLat2.chr22                I 6 C 0
s xipMac1.JH556722                320595 4 -   2306555 ----aaga
i xipMac1.JH556722             I 4 C 0
s danRer10.chr17                18110737 4 -  53345113 ----AATA
i danRer10.chr17               I 16 C 0
s lepOcu1.chrLG1                19990867 4 -  69065196 ----aaca
i lepOcu1.chrLG1               I 2833 C 0
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e xenTro7.KB021649              49599362 0 + 215906545 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e astMex1.KB882153               1887684 6275 +   2696342 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e ficAlb2.chr2                 148476412 0 + 157563209 C
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221189              55280401 0 -  63311091 C
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH739256                321407 0 -    882412 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1970063 14630 +   4979691 I
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr3                  13879943 9148 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21188098 1840 -  23169006 M
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=21870.000000
s hg38.chr8_KI270814v1_alt         85505 11 +    141812 AAATTGAAGTA
s ponAbe2.chr8                  59055035 11 + 153482349 AAATTGAAGTA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48133640 11 + 100215132 AAATTGAAGTT
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99340914 11 + 108792865 AATTTGAAATC
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24007081 11 +  27210278 AATTTGAAATC
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19211342 11 -  22931326 AAATTCAAATC
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2805732 11 -   6207710 AAATTGAAATC
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10841345 11 +  17242564 AAATTAAAATC
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84035572 10 +  91571448 AAACTGAAAT-
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6809115 11 -  14545593 AAATTGAAATC
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134106252 11 + 140925898 AAGTCAAAATC
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57839261 11 -  64289059 AAATTAAGATC
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13611531 11 -  19722643 AAATTAAGATC
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3034661 11 +   4816872 AAATTAAGATC
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19412356 11 -  23789964 GAATTGAAATC
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27619358 11 -  46401353 AAATTGAAATC
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9966795 11 +  24341844 AAATTGAAATC
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1033242  9 -   2788317 AACTT--AATC
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530531338 11 + 748055161 AATCTAGAAAC
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    523041 10 +   3395230 AACCTAGAAA-
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL109592                103905 11 -    117391 AATCTAGAAAC
i macEug2.GL109592             C 0 C 0
s ornAna1.Contig30778               2821  5 +      7217 AGTGT------
i ornAna1.Contig30778          C 0 C 0
s ficAlb2.chr2                 148476412 11 + 157563209 aagtgGGAGCC
i ficAlb2.chr2                 C 0 C 0
s taeGut2.chr3                  13889091 11 - 112617285 AAATAAAAGTT
i taeGut2.chr3                 I 9148 I 1
s pseHum1.KB221189              55280401 11 -  63311091 aagtgggagac
i pseHum1.KB221189             C 0 C 0
s anaPla1.KB742696               1254355 11 -   1270250 ATATGAAGTTT
i anaPla1.KB742696             I 39 C 0
s melGal1.chr3                  91313683 11 + 100405168 CTATGAATATG
i melGal1.chr3                 I 21 C 0
s chrPic2.chrUn_KK088237v1       5683845  5 -  22294289 AAGTG------
i chrPic2.chrUn_KK088237v1     I 6 I 31
s oryLat2.chr22                 17715512  9 -  28810691 aaaacaaga--
i oryLat2.chr22                C 0 I 7
s xipMac1.JH556722                320599  9 -   2306555 aaattaaga--
i xipMac1.JH556722             C 0 I 18
s danRer10.chr17                18110741  9 -  53345113 TAAGCAAAC--
i danRer10.chr17               C 0 I 4
s lepOcu1.chrLG1                19990871  8 -  69065196 aaatgaag---
i lepOcu1.chrLG1               C 0 I 6
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e xenTro7.KB021649              49599362  0 + 215906545 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e astMex1.KB882153               1887684 6275 +   2696342 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH739256                321407  0 -    882412 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1970063 14630 +   4979691 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21188098 1840 -  23169006 M
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=40752.000000
s hg38.chr8_KI270814v1_alt         85516 3 +    141812 TCA
s ponAbe2.chr8                  59055046 3 + 153482349 TCA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48133651 3 + 100215132 TCA
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99340925 3 + 108792865 TCA
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24007092 3 +  27210278 TCA
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19211353 3 -  22931326 TCA
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2805743 3 -   6207710 TCA
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10841356 3 +  17242564 TCA
i orcOrc1.KB316907             C 0 C 0
s cerSim1.JH767782               6809126 3 -  14545593 TTA
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134106263 3 + 140925898 TCA
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57839272 3 -  64289059 TCA
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13611542 3 -  19722643 TCC
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3034672 3 +   4816872 TCA
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19412367 3 -  23789964 TCA
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27619369 3 -  46401353 TCA
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9966806 3 +  24341844 TCA
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1033251 3 -   2788317 TCA
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530531349 2 + 748055161 -CA
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    523051 2 +   3395230 -CA
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL109592                103916 2 -    117391 -CA
i macEug2.GL109592             C 0 C 0
e xipMac1.JH556722                320608 18 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e danRer10.chr17                18110750 4 -  53345113 I
e lepOcu1.chrLG1                19990879 6 -  69065196 I
e xenTro7.KB021649              49599362 0 + 215906545 I
e ornAna1.Contig30778               2826 0 +      7217 C
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e astMex1.KB882153               1887684 6275 +   2696342 I
e oryLat2.chr22                 17715521 7 -  28810691 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e ficAlb2.chr2                 148476423 0 + 157563209 C
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221189              55280412 0 -  63311091 C
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH739256                321407 0 -    882412 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr3                  91313694 0 + 100405168 C
e anaPla1.KB742696               1254366 0 -   1270250 C
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1970063 14630 +   4979691 I
e chrPic2.chrUn_KK088237v1       5683850 31 -  22294289 I
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr3                  13889102 1 - 112617285 I
e equCab2.chr15                 84035582 0 +  91571448 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21188098 1840 -  23169006 M
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=49610.000000
s hg38.chr8_KI270814v1_alt         85519 12 +    141812 AA---TTACCTATAC
s ponAbe2.chr8                  59055049 12 + 153482349 AA---TTACCTATAT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48133654 12 + 100215132 AA---TTACCTATAC
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99340928 12 + 108792865 AA---TTACCTATAT
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24007095 12 +  27210278 AA---TTACCTATAT
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19211356 12 -  22931326 AA---TTACCTACAC
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2805746 12 -   6207710 AA---TCACCTACAC
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10841359 12 +  17242564 AA---TTACCTATGC
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84035582 11 +  91571448 -A---TTACCTACGC
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6809129 12 -  14545593 AA---TTACCTATGT
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134106266 11 + 140925898 AA---TTACGTACT-
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57839275 11 -  64289059 AA---TTTCATACA-
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13611545 11 -  19722643 AA---TTATCTGCA-
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3034675 11 +   4816872 AA---TTACCTACA-
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19412370 12 -  23789964 AA---TTACTTATGT
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27619372 10 -  46401353 AA---TTACCT--AA
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9966809 12 +  24341844 AA---TTACCTACAC
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1033254 11 -   2788317 AAAGGATACTT----
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530531351 10 + 748055161 AA---CT--CTGCAC
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    523053  9 +   3395230 AA---TT--CTGCA-
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL109592                103918 10 -    117391 AA---CT--CTACAT
i macEug2.GL109592             C 0 C 0
s ornAna1.Contig30778               2826 10 +      7217 -----TTCACTATGT
i ornAna1.Contig30778          C 0 C 0
s xenTro7.KB021654              26445012 12 + 122929044 aa---atatatatat
i xenTro7.KB021654             I 1656 C 0
e xipMac1.JH556722                320608 18 -   2306555 I
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e danRer10.chr17                18110750  4 -  53345113 I
e lepOcu1.chrLG1                19990879  6 -  69065196 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e astMex1.KB882153               1887684 6275 +   2696342 I
e oryLat2.chr22                 17715521  7 -  28810691 I
e takFla1.KE120649                 19338 344 -    165821 I
e fr3.HE591725                    288760 344 -    411779 I
e ficAlb2.chr2                 148476423  0 + 157563209 C
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280412  0 -  63311091 C
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH739256                321407  0 -    882412 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr3                  91313694  0 + 100405168 C
e anaPla1.KB742696               1254366  0 -   1270250 C
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1970063 14630 +   4979691 I
e chrPic2.chrUn_KK088237v1       5683850 31 -  22294289 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr3                  13889102  1 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21188098 1840 -  23169006 M
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-149551.000000
s hg38.chr8_KI270814v1_alt         85531  8 +    141812 ATAAT---TTT------
s ponAbe2.chr8                  59055061  8 + 153482349 ATAAT---TTT------
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48133666  8 + 100215132 ATAAT---TTT------
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99340940  8 + 108792865 GTAAT---TTA------
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24007107  8 +  27210278 GTAAT---TTA------
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19211368  8 -  22931326 TTATT---TTT------
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2805758  8 -   6207710 TTATT---TTT------
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10841371  8 +  17242564 TTACT---TTT------
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84035593  8 +  91571448 TTATT---TTC------
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6809141  8 -  14545593 TTATT---TTT------
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134106277  1 + 140925898 ----------A------
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57839286  8 -  64289059 TTTTT---TTA------
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13611556  6 -  19722643 --TTA---AAA------
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3034686  6 +   4816872 --TTT---TAA------
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19412382  8 -  23789964 TTATT---TTT------
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27619382  8 -  46401353 TTTTT---TTA------
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9966821  8 +  24341844 TTATT---TTT------
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1033265  5 -   2788317 ---TT---TTT------
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530531361  8 + 748055161 TTATT---TCT------
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    523062  8 +   3395230 CTATT---TCT------
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL109592                103928  8 -    117391 TTATT---TGT------
i macEug2.GL109592             C 0 I 1
s ornAna1.Contig30778               2836 11 +      7217 GTGCTGAATTT------
i ornAna1.Contig30778          C 0 C 0
s xenTro7.KB021654              26445024  8 + 122929044 ataca---tat------
i xenTro7.KB021654             C 0 C 0
s fr3.HE591725                    289104  8 -    411779 ---------ATGGATTT
i fr3.HE591725                 I 344 C 0
s takFla1.KE120649                 19682  8 -    165821 ---------ATGGATTT
i takFla1.KE120649             I 344 C 0
s oryLat2.chr22                 17715528  4 -  28810691 ---------ATAG----
i oryLat2.chr22                I 7 I 3
s xipMac1.JH556722                320626  8 -   2306555 ---------ataaaaat
i xipMac1.JH556722             I 18 C 0
s danRer10.chr17                18110754  5 -  53345113 ---------ATGAC---
i danRer10.chr17               I 4 C 0
s lepOcu1.chrLG1                19990885  2 -  69065196 ---------AC------
i lepOcu1.chrLG1               I 6 C 0
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e astMex1.KB882153               1887684 6275 +   2696342 I
e ficAlb2.chr2                 148476423  0 + 157563209 C
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280412  0 -  63311091 C
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH739256                321407  0 -    882412 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr3                  91313694  0 + 100405168 C
e anaPla1.KB742696               1254366  0 -   1270250 C
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1970063 14630 +   4979691 I
e chrPic2.chrUn_KK088237v1       5683850 31 -  22294289 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr3                  13889102  1 - 112617285 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21188098 1840 -  23169006 M
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-152173.000000
s hg38.chr8_KI270814v1_alt         85539 12 +    141812 -------------AAAA-ATGAGAA----C
s ponAbe2.chr8                  59055069 12 + 153482349 -------------AAAA-ATGAGAA----G
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48133674 12 + 100215132 -------------AAAA-ATGAGAA----C
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99340948 16 + 108792865 -------------AAAA-ATGAGAACACTC
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24007115 16 +  27210278 -------------AAAA-ATGAGAACACTC
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19211376 16 -  22931326 -------------TAAA-ATGAAAGCACTC
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2805766 16 -   6207710 -------------TAAA-ATGAAACCACTC
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10841379 16 +  17242564 -------------TTAA-ATGAAAATACTC
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84035601 16 +  91571448 -------------TGAA-ATGCAAACACTT
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6809149 16 -  14545593 -------------TGAA-ATGAAAACACTC
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134106278 16 + 140925898 -------------AAAA-ATGGCAACACTC
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57839294 16 -  64289059 -------------AAAA-ATGGAAACACTC
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13611562 17 -  19722643 -------------AAAATATGGAAACACTC
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3034692 16 +   4816872 -------------AAAA-ATGGAAACACTC
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19412390 16 -  23789964 -------------TAAA-AGGAAAACACTC
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27619390 16 -  46401353 -------------AAAA-ATGAAAGCACTC
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9966829 16 +  24341844 -------------AAAA-ATGAAAACACTC
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1033270 16 -   2788317 -------------TAAA-ATGAATACACTC
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530531369 16 + 748055161 -------------GAAA-TGAAAAACACTT
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    523070 16 +   3395230 -------------AAAA-GACAAAATACTT
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL109592                103937 16 -    117391 -------------AAAA-GGGAAAACACTT
i macEug2.GL109592             I 1 C 0
s ornAna1.Contig30778               2847 16 +      7217 -------------AAGA-AGGAAAACACTT
i ornAna1.Contig30778          C 0 C 0
s ficAlb2.chr2                 148476423  8 + 157563209 ----------------A------AATACTT
i ficAlb2.chr2                 C 0 C 0
s taeGut2.chr3                  13889103 11 - 112617285 -------------AAAA------GATACAT
i taeGut2.chr3                 I 1 C 0
s pseHum1.KB221189              55280412 10 -  63311091 --------------aaa------aaTACTT
i pseHum1.KB221189             C 0 C 0
s anaPla1.KB742696               1254366 11 -   1270250 -------------AAAA------GATACAT
i anaPla1.KB742696             C 0 C 0
s melGal1.chr3                  91313694  9 + 100405168 -------------AAA--------ACACTT
i melGal1.chr3                 C 0 C 0
s cheMyd1.KB479743               1984693 11 +   4979691 -------------ggga------aatacTT
i cheMyd1.KB479743             I 14630 C 0
s chrPic2.chrUn_KK088237v1       5683881 11 -  22294289 -------------GAAG------AATACTT
i chrPic2.chrUn_KK088237v1     I 31 C 0
s xenTro7.KB021654              26445032  8 + 122929044 -------------TGAA---------ACTT
i xenTro7.KB021654             C 0 C 0
s fr3.HE591725                    289112  5 -    411779 ------------GAAAT-------------
i fr3.HE591725                 C 0 I 7
s takFla1.KE120649                 19690  5 -    165821 ------------GAAAT-------------
i takFla1.KE120649             C 0 I 7
s xipMac1.JH556722                320634  5 -   2306555 ------------gggtt-------------
i xipMac1.JH556722             C 0 I 5
s danRer10.chr17                18110759 17 -  53345113 AGAAATCAGCTGGAAAT-------------
i danRer10.chr17               C 0 I 5
s astMex1.KB882153               1893959 12 +   2696342 aaaaa-----tgaagac-------------
i astMex1.KB882153             I 6275 n 6275
s lepOcu1.chrLG1                19990887  9 -  69065196 --------AAAGAGGGT-------------
i lepOcu1.chrLG1               C 0 I 3
e gasAcu1.chrXV                  6158331 2180 +  16198764 I
e tetNig2.chr10                  6374853 1384 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e oryLat2.chr22                 17715532  3 -  28810691 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH739256                321407  0 -    882412 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21188098 1840 -  23169006 M
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=3105128.000000
s hg38.chr8_KI270814v1_alt         85551 59 +    141812 ACATTTTTGTTTCATACTCCTTCTAAGCTTTATCAAAAGGCTTTTTCAGATTCT-TTAAA
s ponAbe2.chr8                  59055081 56 + 153482349 ACATTTTTGTTTCATACTCCT---AAGCTTTATCAAAAGGCTTTTTCAGATTCT-TTAAG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48133686 59 + 100215132 ACATTTTTGTTTCATACTCCTTCTAAGCTTTATCAAAAGGCTTTTTCAGATTCT-TTAAA
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99340964 59 + 108792865 ACATTTTTGTTTCATAGTCCTTCCAAGCTTTATCAAAAGGCTTTTTCAGATCCT-GCAAA
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24007131 59 +  27210278 ACATTTTTGTTTCATAGTCCTTCCAAGCTTTATCAAAAGGTTTTTTCAGATCCT-GCAAA
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19211392 59 -  22931326 ACATTTTTGTTTCATAGTCCTTCCAAGCTTTATCAAAAGGCTTTTTCAGATCCT-GTAAA
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2805782 59 -   6207710 ACATTTTTGTTTCATAGTCCTTCCAAGCTTTATCAAAAGGCTTTTTCAGATCCT-GTAAA
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10841395 59 +  17242564 ACATTTTTGTTTCATAGTCCTTCCAAGCTTTATCAAAAGGCTTTTTCAGATCCT-GTAAA
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84035617 59 +  91571448 ACATTTTTGTTTCATAGTCCTTCCAAGCTTTATCAAAAGGCTTTTTCAGATCCT-GTAAA
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6809165 59 -  14545593 ACATTTTTGTTTCATAGTCCTTCCAAGCTTTATCAAAAGGCTTTTTCAGATCCT-GTAAA
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134106294 59 + 140925898 ACATTTTTGTTTCATAGTCCTTCCAAGCTTTATCAAAAGGCTTTTTCAGATCCT-GCAAA
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57839310 59 -  64289059 ACATTTTTGTTTCATAGTCCTTCCAAGCTTTATCAAAAGGCTTTTTCAGATCCT-GTAAA
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13611579 59 -  19722643 ACATTTTTGTTTCATAGTCCTTCCAAGCTTTATCAAAAGGCTTTTTCAGATCCT-GTAAA
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3034708 59 +   4816872 ACATTTTTGTTTCATAGTCCTTCCAAGCTTTATCAAAAGGCTTTTTCAGATCCT-GTAAA
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19412406 59 -  23789964 ACATTTTGGTTTCGTAGTCCTTCCAAGCTTTATCAAAAGGCTTTTTCAGATCCT-ATAAA
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27619406 59 -  46401353 ACATTTTTGTTTCATAGTCCTTCCAAGCTTTATCAAAAGGTTTTTTCAGATCCT-GTAAA
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9966845 59 +  24341844 ACATTTTTGTTTCATAGTCCTTCCATGCTTTATCAAAAGGTTTTTTCAGATCCT-GTAAA
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1033286 59 -   2788317 ACATTTTTGTTTCATAGTCCTTCCAAGCTTTATCAAATGGCTTTTTCAGATCCT-GTAAA
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530531385 59 + 748055161 ACACTTTTGTTTCATAGTCCTTCCAAGCTTTGTCAAAAGGCTTTTTCAGATCCT-GTAAA
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    523086 59 +   3395230 ACACTTTTGTTTCATAGTCTTTCCAAGCTTTGTCAAAAGGCTTTTTCAGATCCT-GTAAA
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL109592                103953 59 -    117391 ACACTTTTGTTTCATAGTCCTTCCAAGCTTTGTCAAAAGGCTTTTTCAGATCCT-GTAAA
i macEug2.GL109592             C 0 C 0
s ornAna1.Contig30778               2863 59 +      7217 ACACTTTTGTCTCATAGTCCTTCCATGCTTTGTCAAAGGGCTTTTTCAGATCCT-TAAAA
i ornAna1.Contig30778          C 0 C 0
s ficAlb2.chr2                 148476431 57 + 157563209 ACAATTTGGTTTCATAATCTTTCCAGGCTTTGTCAAAAGGCTTTTTGAGGTcc---ttag
i ficAlb2.chr2                 C 0 C 0
s taeGut2.chr3                  13889114 59 - 112617285 ACACTTTTGTTTCGTAGTCCTTCCAAGCTTTATCAAAGGGTTTTTTCAGGTCCT-GTTAA
i taeGut2.chr3                 C 0 C 0
s pseHum1.KB221189              55280422 57 -  63311091 ACAATTTGGTTTCATAATCTTTCCAGGCTTTGTCAAAAGGTTTTTTGAGGTCC---TTAG
i pseHum1.KB221189             C 0 C 0
s anaPla1.KB742696               1254377 59 -   1270250 ACACTTTCGTTTCATAGTCCTTCCAAGCTTTATCAAAGGGTTTTTTCAGGTCCT-Gtcaa
i anaPla1.KB742696             C 0 C 0
s melGal1.chr3                  91313703 58 + 100405168 ACAATTTGGTTTCATAATCCTTCCAGGCTTTGTCAAAAGGCTTTTTGAGGTCCT--TCAG
i melGal1.chr3                 C 0 C 0
s cheMyd1.KB479743               1984704 59 +   4979691 ACACCTTTGTTTCGTAGTCCTTCCAAGCCTTATCAAAAGGCTTTTTCAGATCCT-GTCAA
i cheMyd1.KB479743             C 0 C 0
s chrPic2.chrUn_KK088237v1       5683892 59 -  22294289 ACAATTTGGTCTCATAATCCTTCCAGGCTTTGTCAAAAGGCTTTTTAAGATCCT-TAGGA
i chrPic2.chrUn_KK088237v1     C 0 C 0
s xenTro7.KB021654              26445040 60 + 122929044 ACACTTTAGTTTCATAGTCTTTCCAGGCTTTTTCGAATGGCTTTTTCAATTCCTAATTAA
i xenTro7.KB021654             C 0 C 0
s tetNig2.chr10                  6376237 59 +  13272281 ACACTTTAGTTTCATAGTCTTTCCAGGCTTTGTCAAAGGGCTTTTTCAGATCCT-GAGGA
i tetNig2.chr10                I 1384 I 4
s fr3.HE591725                    289124 59 -    411779 ACAGTTTGGCCTCGTAATCCTTCCAAGATTTCTCAAAAGGCTTCTTCAAATCCT-GAAAA
i fr3.HE591725                 I 7 I 523
s takFla1.KE120649                 19702 59 -    165821 ACAGTTTGGCCTCGTAATCCTTCCAAGATTTCTCAAAAGGCTTCTTCAAATCCT-GAAAA
i takFla1.KE120649             I 7 I 552
s oryLat2.chr22                 17715535 59 -  28810691 ACACTTTTGTTTCGTAGTCCTTCCAGGATTTgtcaaaaggctttttcaggtcct-gcaaa
i oryLat2.chr22                I 3 I 1
s xipMac1.JH556722                320644 59 -   2306555 ACACTTTGGTTTCGTAGTCCTTCCAGGCTTTGTCAAAAGGCTTTTTCAGATCCT-gaaaa
i xipMac1.JH556722             I 5 I 1
s gasAcu1.chrXV                  6160511 59 +  16198764 ACACTTTGGTTTCATAGTCCTTCCATGCTTTGTCAAACGGCTTTTTCAGATCCT-GTGGA
i gasAcu1.chrXV                I 2180 I 2
s danRer10.chr17                18110781 59 -  53345113 ACACTTTAGTCTCGTAGTCTTTCCAGGCTTTATCGAAGGGCTTCTTGAGATCCT-GCAag
i danRer10.chr17               I 5 I 7
s astMex1.KB882259               1465384 59 -   1566646 acaaCTTCGTTTCATAGTCCTTCCAAGCCTTGTCAAAGGGTTTTTTCAAAtcct-agaaa
i astMex1.KB882259             I 1823 I 7
s lepOcu1.chrLG1                19990899 59 -  69065196 ACACTTTTGTTTCATAGTCTTTCCAGGCCTTATCAAAAGGCTTTTTCAgatcct-gtaaa
i lepOcu1.chrLG1               I 3 C 0
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH739256                321407  0 -    882412 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21188098 1840 -  23169006 M
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=48173.000000
s hg38.chr8_KI270814v1_alt         85610 2 +    141812 CA
s ponAbe2.chr8                  59055137 2 + 153482349 CA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48133745 2 + 100215132 CA
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99341023 2 + 108792865 CA
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24007190 2 +  27210278 CA
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19211451 2 -  22931326 CA
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2805841 2 -   6207710 CA
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10841454 2 +  17242564 CA
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84035676 2 +  91571448 CA
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6809224 2 -  14545593 CA
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134106353 2 + 140925898 CA
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57839369 2 -  64289059 CA
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13611638 2 -  19722643 CA
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3034767 2 +   4816872 CA
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19412465 2 -  23789964 CA
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27619465 2 -  46401353 CA
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9966904 2 +  24341844 CA
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1033345 2 -   2788317 TA
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530531444 2 + 748055161 CA
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    523145 2 +   3395230 TA
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL109592                104012 2 -    117391 CA
i macEug2.GL109592             C 0 C 0
s ornAna1.Contig30778               2922 2 +      7217 AA
i ornAna1.Contig30778          C 0 C 0
s ficAlb2.chr2                 148476488 2 + 157563209 ga
i ficAlb2.chr2                 C 0 I 3
s taeGut2.chr3                  13889173 2 - 112617285 GA
i taeGut2.chr3                 C 0 I 3
s pseHum1.KB221189              55280479 2 -  63311091 GA
i pseHum1.KB221189             C 0 I 3
s anaPla1.KB742696               1254436 2 -   1270250 aa
i anaPla1.KB742696             C 0 I 5
s melGal1.chr3                  91313761 2 + 100405168 aa
i melGal1.chr3                 C 0 n 0
s cheMyd1.KB479743               1984763 2 +   4979691 CA
i cheMyd1.KB479743             C 0 I 3
s chrPic2.chrUn_KK088237v1       5683951 2 -  22294289 AA
i chrPic2.chrUn_KK088237v1     C 0 I 3
s xenTro7.KB021654              26445100 2 + 122929044 AA
i xenTro7.KB021654             C 0 I 1
s tetNig2.chr10                  6376300 2 +  13272281 CA
i tetNig2.chr10                I 4 C 0
s oryLat2.chr22                 17715595 2 -  28810691 ca
i oryLat2.chr22                I 1 C 0
s xipMac1.JH556722                320704 2 -   2306555 tg
i xipMac1.JH556722             I 1 C 0
s gasAcu1.chrXV                  6160572 2 +  16198764 AA
i gasAcu1.chrXV                I 2 C 0
s danRer10.chr17                18110847 2 -  53345113 ca
i danRer10.chr17               I 7 C 0
s astMex1.KB882259               1465450 2 -   1566646 aa
i astMex1.KB882259             I 7 C 0
s lepOcu1.chrLG1                19990958 2 -  69065196 aa
i lepOcu1.chrLG1               C 0 C 0
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120649                 19761 552 -    165821 I
e fr3.HE591725                    289183 523 -    411779 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH739256                321407 0 -    882412 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21188098 1840 -  23169006 M
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-306939.000000
s hg38.chr8_KI270814v1_alt         85612 6 +    141812 -------GAGGG-T
s ponAbe2.chr8                  59055139 6 + 153482349 -------GAGGA-T
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48133747 6 + 100215132 -------GAAGG-T
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99341025 6 + 108792865 -------AAGAG-G
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24007192 6 +  27210278 -------AAGAG-G
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19211453 6 -  22931326 -------GAGAG-G
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2805843 6 -   6207710 -------GAGAG-G
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10841456 6 +  17242564 -------GAGAG-G
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84035678 6 +  91571448 -------GAGAG-G
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6809226 6 -  14545593 -------GAGAG-G
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134106355 6 + 140925898 -------GAGAG-G
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57839371 6 -  64289059 -------GAGAG-G
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13611640 6 -  19722643 -------GAGAG-G
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3034769 6 +   4816872 -------GAGAG-G
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19412467 6 -  23789964 -------GAGAG-G
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27619467 6 -  46401353 -------GAGAG-G
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9966906 6 +  24341844 -------GAGAG-G
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1033347 6 -   2788317 -------GAAAG-G
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530531446 5 + 748055161 -------CAGAG--
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    523147 5 +   3395230 -------CAGAG--
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL109592                104014 5 -    117391 -------CAAAG--
i macEug2.GL109592             C 0 C 0
s ornAna1.Contig30778               2924 7 +      7217 -------AAAAAAA
i ornAna1.Contig30778          C 0 C 0
s ficAlb2.chr2                 148476493 3 + 157563209 ---------aaa--
i ficAlb2.chr2                 I 3 C 0
s taeGut2.chr3                  13889178 3 - 112617285 ---------GAG--
i taeGut2.chr3                 I 3 C 0
s pseHum1.KB221189              55280484 3 -  63311091 ---------AGA--
i pseHum1.KB221189             I 3 C 0
s anaPla1.KB742696               1254443 3 -   1270250 ---------gag--
i anaPla1.KB742696             I 5 C 0
s cheMyd1.KB479743               1984768 3 +   4979691 ---------GAA--
i cheMyd1.KB479743             I 3 I 1
s chrPic2.chrUn_KK088237v1       5683956 3 -  22294289 ---------AAA--
i chrPic2.chrUn_KK088237v1     I 3 I 314
s xenTro7.KB021654              26445103 5 + 122929044 -------AAAAA--
i xenTro7.KB021654             I 1 C 0
s tetNig2.chr10                  6376302 7 +  13272281 AAGC--ACA-----
i tetNig2.chr10                C 0 C 0
s oryLat2.chr22                 17715597 6 -  28810691 aag---aca-----
i oryLat2.chr22                C 0 C 0
s xipMac1.JH556722                320706 5 -   2306555 aa----aca-----
i xipMac1.JH556722             C 0 C 0
s gasAcu1.chrXV                  6160574 9 +  16198764 AAACAAACA-----
i gasAcu1.chrXV                C 0 C 0
s danRer10.chr17                18110849 6 -  53345113 gag---aga-----
i danRer10.chr17               C 0 C 0
s astMex1.KB882259               1465452 6 -   1566646 aaa---aca-----
i astMex1.KB882259             C 0 C 0
s lepOcu1.chrLG1                19990960 6 -  69065196 aaa---aaa-----
i lepOcu1.chrLG1               C 0 C 0
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120649                 19761 552 -    165821 I
e fr3.HE591725                    289183 523 -    411779 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH739256                321407 0 -    882412 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr3                  91313763 0 + 100405168 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21188098 1840 -  23169006 M
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-14029.000000
s hg38.chr8_KI270814v1_alt         85618 7 +    141812 AATAC------AT
s ponAbe2.chr8                  59055145 7 + 153482349 AATAC------AT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48133753 7 + 100215132 AATAC------AT
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99341031 7 + 108792865 AATAA------CT
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24007198 7 +  27210278 AATAA------CT
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19211459 7 -  22931326 CATAA------AT
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2805849 7 -   6207710 CATAA------AT
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10841462 7 +  17242564 CATAA------AT
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84035684 7 +  91571448 CATAA------AT
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6809232 7 -  14545593 CATAA------AT
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134106361 7 + 140925898 CATAA------AT
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57839377 7 -  64289059 CATAA------AT
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13611646 7 -  19722643 CATAA------AT
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3034775 7 +   4816872 CATAA------AT
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19412473 7 -  23789964 CATAA------AT
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27619473 7 -  46401353 CATAA------AT
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9966912 7 +  24341844 CATAC------AT
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1033353 7 -   2788317 CATAT------GT
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530531451 7 + 748055161 CACAA------AT
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    523152 7 +   3395230 CACAA------AT
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL109592                104019 7 -    117391 CACAA------AT
i macEug2.GL109592             C 0 C 0
s ornAna1.Contig30778               2931 7 +      7217 GAAAT------AT
i ornAna1.Contig30778          C 0 C 0
s ficAlb2.chr2                 148476496 4 + 157563209 ---aa------at
i ficAlb2.chr2                 C 0 I 5
s taeGut2.chr3                  13889181 4 - 112617285 ---AA------AA
i taeGut2.chr3                 C 0 n 0
s pseHum1.KB221189              55280487 4 -  63311091 ---AA------AT
i pseHum1.KB221189             C 0 I 5
s anaPla1.KB742696               1254446 4 -   1270250 ---aa------at
i anaPla1.KB742696             C 0 I 3
s cheMyd1.KB479743               1984772 4 +   4979691 ---AA------CA
i cheMyd1.KB479743             I 1 I 3
s xenTro7.KB021654              26445108 7 + 122929044 AACAA------AT
i xenTro7.KB021654             C 0 C 0
s tetNig2.chr10                  6376309 2 +  13272281 ---AA--------
i tetNig2.chr10                C 0 I 6
s oryLat2.chr22                 17715603 2 -  28810691 ---aa--------
i oryLat2.chr22                C 0 N 0
s xipMac1.JH556722                320711 2 -   2306555 ---gg--------
i xipMac1.JH556722             C 0 I 1
s gasAcu1.chrXV                  6160583 2 +  16198764 ---AG--------
i gasAcu1.chrXV                C 0 I 1
s danRer10.chr17                18110855 2 -  53345113 ---gg--------
i danRer10.chr17               C 0 I 9
s astMex1.KB882259               1465458 2 -   1566646 ---ag--------
i astMex1.KB882259             C 0 I 16
s lepOcu1.chrLG1                19990966 8 -  69065196 ---agaacagt--
i lepOcu1.chrLG1               C 0 N 0
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120649                 19761 552 -    165821 I
e fr3.HE591725                    289183 523 -    411779 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH739256                321407 0 -    882412 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr3                  91313763 0 + 100405168 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e chrPic2.chrUn_KK088237v1       5683959 314 -  22294289 I
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21188098 1840 -  23169006 M
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=31941.000000
s hg38.chr8_KI270814v1_alt         85625 1 +    141812 T
s ponAbe2.chr8                  59055152 1 + 153482349 T
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48133760 1 + 100215132 T
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99341038 1 + 108792865 T
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24007205 1 +  27210278 T
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19211466 1 -  22931326 T
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2805856 1 -   6207710 T
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10841469 1 +  17242564 T
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84035691 1 +  91571448 T
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6809239 1 -  14545593 T
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134106368 1 + 140925898 T
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57839384 1 -  64289059 T
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13611653 1 -  19722643 T
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3034782 1 +   4816872 T
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19412480 1 -  23789964 T
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27619480 1 -  46401353 T
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9966919 1 +  24341844 T
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1033360 1 -   2788317 T
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530531458 1 + 748055161 T
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    523159 1 +   3395230 T
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL109592                104026 1 -    117391 T
i macEug2.GL109592             C 0 C 0
s ornAna1.Contig30778               2938 1 +      7217 T
i ornAna1.Contig30778          C 0 C 0
s ficAlb2.chr2                 148476505 1 + 157563209 t
i ficAlb2.chr2                 I 5 C 0
s taeGut2.chr2                 147424361 1 + 156412533 T
i taeGut2.chr2                 n 0 C 0
s pseHum1.KB221189              55280496 1 -  63311091 t
i pseHum1.KB221189             I 5 C 0
s cheMyd1.KB479743               1984779 1 +   4979691 T
i cheMyd1.KB479743             I 3 C 0
s xenTro7.KB021654              26445115 1 + 122929044 T
i xenTro7.KB021654             C 0 C 0
e xipMac1.JH556722                320713 1 -   2306555 I
e gasAcu1.chrXV                  6160585 1 +  16198764 I
e danRer10.chr17                18110857 9 -  53345113 I
e tetNig2.chr10                  6376311 6 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e astMex1.KB882259               1465460 16 -   1566646 I
e takFla1.KE120649                 19761 552 -    165821 I
e fr3.HE591725                    289183 523 -    411779 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH739256                321407 0 -    882412 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr3                  91313763 0 + 100405168 I
e anaPla1.KB742696               1254450 3 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e chrPic2.chrUn_KK088237v1       5683959 314 -  22294289 I
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21188098 1840 -  23169006 M
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=45541.000000
s hg38.chr8_KI270814v1_alt         85626 2 +    141812 A------G
s ponAbe2.chr8                  59055153 2 + 153482349 A------G
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48133761 2 + 100215132 A------G
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99341039 2 + 108792865 A------G
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24007206 2 +  27210278 A------G
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19211467 2 -  22931326 A------A
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2805857 2 -   6207710 A------A
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10841470 2 +  17242564 A------A
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84035692 2 +  91571448 A------A
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6809240 2 -  14545593 A------A
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134106369 2 + 140925898 A------A
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57839385 2 -  64289059 A------A
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13611654 2 -  19722643 A------A
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3034783 2 +   4816872 A------A
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19412481 2 -  23789964 A------A
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27619481 2 -  46401353 A------A
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9966920 2 +  24341844 A------A
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1033361 2 -   2788317 A------A
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530531459 8 + 748055161 AGATGTGG
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    523160 2 +   3395230 A------G
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL109592                104027 2 -    117391 A------G
i macEug2.GL109592             C 0 C 0
s ornAna1.Contig30778               2939 2 +      7217 A------A
i ornAna1.Contig30778          C 0 C 0
s ficAlb2.chr2                 148476506 2 + 157563209 A------G
i ficAlb2.chr2                 C 0 n 0
s taeGut2.chr2                 147424362 2 + 156412533 A------G
i taeGut2.chr2                 C 0 C 0
s pseHum1.KB221189              55280497 2 -  63311091 a------g
i pseHum1.KB221189             C 0 n 0
s anaPla1.KB742696               1254453 2 -   1270250 A------A
i anaPla1.KB742696             I 3 I 1
s cheMyd1.KB479743               1984780 2 +   4979691 A------A
i cheMyd1.KB479743             C 0 C 0
s xenTro7.KB021654              26445116 2 + 122929044 A------G
i xenTro7.KB021654             C 0 N 0
s tetNig2.chr10                  6376317 2 +  13272281 A------G
i tetNig2.chr10                I 6 C 0
s xipMac1.JH556722                320714 2 -   2306555 a------a
i xipMac1.JH556722             I 1 C 0
s gasAcu1.chrXV                  6160586 2 +  16198764 A------G
i gasAcu1.chrXV                I 1 C 0
s danRer10.chr17                18110866 2 -  53345113 A------G
i danRer10.chr17               I 9 N 0
s astMex1.KB882259               1465476 2 -   1566646 a------a
i astMex1.KB882259             I 16 I 6
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120649                 19761 552 -    165821 I
e fr3.HE591725                    289183 523 -    411779 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH739256                321407 0 -    882412 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr3                  91313763 0 + 100405168 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e chrPic2.chrUn_KK088237v1       5683959 314 -  22294289 I
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21188098 1840 -  23169006 M
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=12117.000000
s hg38.chr8_KI270814v1_alt         85628 1 +    141812 G
s ponAbe2.chr8                  59055155 1 + 153482349 G
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48133763 1 + 100215132 G
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99341041 1 + 108792865 G
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24007208 1 +  27210278 G
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19211469 1 -  22931326 A
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2805859 1 -   6207710 A
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10841472 1 +  17242564 A
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84035694 1 +  91571448 A
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6809242 1 -  14545593 A
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134106371 1 + 140925898 A
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57839387 1 -  64289059 A
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13611656 1 -  19722643 A
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3034785 1 +   4816872 A
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19412483 1 -  23789964 A
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27619483 1 -  46401353 A
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9966922 1 +  24341844 A
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1033363 1 -   2788317 A
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530531467 1 + 748055161 A
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    523162 1 +   3395230 A
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL109592                104029 1 -    117391 A
i macEug2.GL109592             C 0 C 0
s ornAna1.Contig30778               2941 1 +      7217 A
i ornAna1.Contig30778          C 0 C 0
s cheMyd1.KB479743               1984782 1 +   4979691 A
i cheMyd1.KB479743             C 0 C 0
s danRer10.chr2                 32324547 1 +  59543403 G
i danRer10.chr2                N 0 C 0
s astMex1.KB882259               1465484 1 -   1566646 G
i astMex1.KB882259             I 6 C 0
e xipMac1.JH556722                320716 0 -   2306555 C
e gasAcu1.chrXV                  6160588 0 +  16198764 C
e tetNig2.chr10                  6376319 0 +  13272281 C
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120649                 19761 552 -    165821 I
e fr3.HE591725                    289183 523 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221189              55280499 0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH739256                321407 0 -    882412 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr3                  91313763 0 + 100405168 I
e anaPla1.KB742696               1254455 1 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e chrPic2.chrUn_KK088237v1       5683959 314 -  22294289 I
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr2                 147424364 0 + 156412533 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21188098 1840 -  23169006 M
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=21942.000000
s hg38.chr8_KI270814v1_alt         85629 1 +    141812 C
s ponAbe2.chr8                  59055156 1 + 153482349 C
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48133764 1 + 100215132 C
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99341042 1 + 108792865 C
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24007209 1 +  27210278 C
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19211470 1 -  22931326 C
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2805860 1 -   6207710 C
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10841473 1 +  17242564 C
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84035695 1 +  91571448 C
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6809243 1 -  14545593 C
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134106372 1 + 140925898 C
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57839388 1 -  64289059 C
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13611657 1 -  19722643 C
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3034786 1 +   4816872 C
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19412484 1 -  23789964 C
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27619484 1 -  46401353 C
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9966923 1 +  24341844 C
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1033364 1 -   2788317 T
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530531468 1 + 748055161 T
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    523163 1 +   3395230 C
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL109592                104030 1 -    117391 T
i macEug2.GL109592             C 0 C 0
s ornAna1.Contig30778               2942 1 +      7217 C
i ornAna1.Contig30778          C 0 C 0
s cheMyd1.KB479743               1984783 1 +   4979691 C
i cheMyd1.KB479743             C 0 C 0
s xenTro7.KB022081                  3304 1 +     65226 C
i xenTro7.KB022081             N 0 C 0
s tetNig2.chr10                  6376319 1 +  13272281 C
i tetNig2.chr10                C 0 I 2971
s xipMac1.JH556722                320716 1 -   2306555 t
i xipMac1.JH556722             C 0 C 0
s gasAcu1.chrXV                  6160588 1 +  16198764 A
i gasAcu1.chrXV                C 0 C 0
s danRer10.chr2                 32324548 1 +  59543403 C
i danRer10.chr2                C 0 C 0
s astMex1.KB882259               1465485 1 -   1566646 C
i astMex1.KB882259             C 0 C 0
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120649                 19761 552 -    165821 I
e fr3.HE591725                    289183 523 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221189              55280499 0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH739256                321407 0 -    882412 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr3                  91313763 0 + 100405168 I
e anaPla1.KB742696               1254455 1 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e chrPic2.chrUn_KK088237v1       5683959 314 -  22294289 I
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr2                 147424364 0 + 156412533 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21188098 1840 -  23169006 M
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=16229.000000
s hg38.chr8_KI270814v1_alt         85630 15 +    141812 ---------AGGACTAATAATTCA
s ponAbe2.chr8                  59055157 15 + 153482349 ---------AGGACTAATAATTCA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48133765 15 + 100215132 ---------AGGACTAATAATTCA
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99341043 15 + 108792865 ---------AAGACTAATCATTCA
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24007210 15 +  27210278 ---------AAGACTAATCGTTCA
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19211471 15 -  22931326 ---------AGGACTAATCATTAA
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2805861 15 -   6207710 ---------AGGACTAATCATTAA
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10841474 15 +  17242564 ---------AGGACTAATCATTAA
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84035696 15 +  91571448 ---------AGGACTAATCATTAA
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6809244 15 -  14545593 ---------AGGACTAATCATTAA
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134106373 14 + 140925898 ---------AGAACTAGT-ATTAA
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57839389 14 -  64289059 ---------GGAACTCAT-ATTAA
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13611658 14 -  19722643 ---------AGAACTAAT-TTTGG
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3034787 14 +   4816872 ---------AGAACTAAT-ATTAA
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19412485 15 -  23789964 ---------CAGACTAACCATTAA
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27619485 15 -  46401353 ---------ATGACTAATCACTAA
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9966924 15 +  24341844 ---------ATGATTAATCATTAA
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1033365 15 -   2788317 ---------TTGACTAACCATCAA
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530531469 15 + 748055161 ---------GTGGCTAAATATTAA
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    523164 15 +   3395230 ---------ATGGCAAAGAATTAA
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL109592                104031 15 -    117391 ---------ATGGCTAAGTATTAA
i macEug2.GL109592             C 0 C 0
s ornAna1.Contig30778               2943 15 +      7217 ---------ATAACTAATGATTAG
i ornAna1.Contig30778          C 0 C 0
s taeGut2.chr2                 147424364  7 + 156412533 ----------------AATATTT-
i taeGut2.chr2                 C 0 C 0
s anaPla1.KB742696               1254456 15 -   1270250 ---------GCAGTTActtattta
i anaPla1.KB742696             I 1 C 0
s cheMyd1.KB479743               1984784 15 +   4979691 ---------ATGGCTAAGTATTTG
i cheMyd1.KB479743             C 0 C 0
s xenTro7.KB022081                  3305 14 +     65226 ---------AAGAGAAAT-GTTGG
i xenTro7.KB022081             C 0 C 0
s xipMac1.JH556722                320717 13 -   2306555 aa----aaaacaattca-------
i xipMac1.JH556722             C 0 I 4277
s gasAcu1.chrXV                  6160589 17 +  16198764 AAGCTTAAATTAATCCA-------
i gasAcu1.chrXV                C 0 C 0
s danRer10.chr2                 32324549  8 +  59543403 ---------GTAATTAG-------
i danRer10.chr2                C 0 I 9
s astMex1.KB882259               1465486  9 -   1566646 --------AGGAATCAG-------
i astMex1.KB882259             C 0 I 8
e tetNig2.chr10                  6376320 2971 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120649                 19761 552 -    165821 I
e fr3.HE591725                    289183 523 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280499  0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH739256                321407  0 -    882412 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr3                  91313763  0 + 100405168 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e chrPic2.chrUn_KK088237v1       5683959 314 -  22294289 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21188098 1840 -  23169006 M
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=28330.000000
s hg38.chr8_KI270814v1_alt         85645 1 +    141812 C
s ponAbe2.chr8                  59055172 1 + 153482349 C
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48133780 1 + 100215132 C
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99341058 1 + 108792865 C
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24007225 1 +  27210278 C
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19211486 1 -  22931326 C
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2805876 1 -   6207710 C
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10841489 1 +  17242564 T
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84035711 1 +  91571448 C
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6809259 1 -  14545593 C
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134106387 1 + 140925898 C
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57839403 1 -  64289059 C
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13611672 1 -  19722643 C
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3034801 1 +   4816872 C
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19412500 1 -  23789964 C
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27619500 1 -  46401353 C
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9966939 1 +  24341844 C
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1033380 1 -   2788317 C
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530531484 1 + 748055161 C
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    523179 1 +   3395230 C
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL109592                104046 1 -    117391 C
i macEug2.GL109592             C 0 C 0
s ornAna1.Contig30778               2958 1 +      7217 C
i ornAna1.Contig30778          C 0 C 0
s anaPla1.KB742696               1254471 1 -   1270250 c
i anaPla1.KB742696             C 0 n 0
s cheMyd1.KB479743               1984799 1 +   4979691 C
i cheMyd1.KB479743             C 0 C 0
s xenTro7.KB022081                  3319 1 +     65226 C
i xenTro7.KB022081             C 0 I 1
s gasAcu1.chrXV                  6160606 1 +  16198764 C
i gasAcu1.chrXV                C 0 I 4779
s danRer10.chr2                 32324566 1 +  59543403 G
i danRer10.chr2                I 9 C 0
s astMex1.KB882259               1465503 1 -   1566646 C
i astMex1.KB882259             I 8 C 0
e xipMac1.JH556722                320730 4277 -   2306555 I
e tetNig2.chr10                  6376320 2971 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120649                 19761 552 -    165821 I
e fr3.HE591725                    289183 523 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221189              55280499 0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH739256                321407 0 -    882412 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr3                  91313763 0 + 100405168 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e chrPic2.chrUn_KK088237v1       5683959 314 -  22294289 I
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr2                 147424371 0 + 156412533 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21188098 1840 -  23169006 M
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=26525.000000
s hg38.chr8_KI270814v1_alt         85646 1 +    141812 T
s ponAbe2.chr8                  59055173 1 + 153482349 T
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48133781 1 + 100215132 T
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99341059 1 + 108792865 T
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24007226 1 +  27210278 T
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19211487 1 -  22931326 T
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2805877 1 -   6207710 T
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10841490 1 +  17242564 T
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84035712 1 +  91571448 T
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6809260 1 -  14545593 T
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134106388 1 + 140925898 T
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57839404 1 -  64289059 T
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13611673 1 -  19722643 T
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3034802 1 +   4816872 T
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19412501 1 -  23789964 T
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27619501 1 -  46401353 T
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9966940 1 +  24341844 T
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1033381 1 -   2788317 T
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530531485 1 + 748055161 T
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    523180 1 +   3395230 T
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL109592                104047 1 -    117391 T
i macEug2.GL109592             C 0 C 0
s ornAna1.Contig30778               2959 1 +      7217 T
i ornAna1.Contig30778          C 0 I 1666
s cheMyd1.KB479743               1984800 1 +   4979691 T
i cheMyd1.KB479743             C 0 C 0
s xenTro7.KB022081                  3321 1 +     65226 C
i xenTro7.KB022081             I 1 C 0
s danRer10.chr2                 32324567 1 +  59543403 T
i danRer10.chr2                C 0 C 0
s astMex1.KB882259               1465504 1 -   1566646 T
i astMex1.KB882259             C 0 C 0
e xipMac1.JH556722                320730 4277 -   2306555 I
e gasAcu1.chrXV                  6160607 4779 +  16198764 I
e tetNig2.chr10                  6376320 2971 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120649                 19761 552 -    165821 I
e fr3.HE591725                    289183 523 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221189              55280499 0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH739256                321407 0 -    882412 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr3                  91313763 0 + 100405168 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e chrPic2.chrUn_KK088237v1       5683959 314 -  22294289 I
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr2                 147424371 0 + 156412533 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21188098 1840 -  23169006 M
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=2607.000000
s hg38.chr8_KI270814v1_alt         85647 2 +    141812 TC-
s ponAbe2.chr8                  59055174 2 + 153482349 TC-
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48133782 2 + 100215132 TC-
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99341060 2 + 108792865 TC-
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24007227 2 +  27210278 TC-
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19211488 2 -  22931326 TC-
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2805878 2 -   6207710 TC-
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10841491 2 +  17242564 TC-
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84035713 2 +  91571448 TC-
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6809261 2 -  14545593 TC-
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134106389 2 + 140925898 TC-
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57839405 2 -  64289059 TC-
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13611674 2 -  19722643 TC-
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3034803 2 +   4816872 TC-
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19412502 2 -  23789964 TC-
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27619502 2 -  46401353 GC-
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9966941 2 +  24341844 GC-
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1033382 2 -   2788317 TC-
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530531486 2 + 748055161 AC-
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    523181 2 +   3395230 AC-
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL109592                104048 2 -    117391 AC-
i macEug2.GL109592             C 0 C 0
s cheMyd1.KB479743               1984801 2 +   4979691 AC-
i cheMyd1.KB479743             C 0 I 4081
s xenTro7.KB022081                  3322 1 +     65226 -C-
i xenTro7.KB022081             C 0 I 1
s danRer10.chr2                 32324568 2 +  59543403 -GG
i danRer10.chr2                C 0 C 0
s astMex1.KB882259               1465505 2 -   1566646 -CA
i astMex1.KB882259             C 0 C 0
e xipMac1.JH556722                320730 4277 -   2306555 I
e gasAcu1.chrXV                  6160607 4779 +  16198764 I
e ornAna1.Contig30778               2960 1666 +      7217 I
e tetNig2.chr10                  6376320 2971 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120649                 19761 552 -    165821 I
e fr3.HE591725                    289183 523 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221189              55280499 0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH739256                321407 0 -    882412 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr3                  91313763 0 + 100405168 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e chrPic2.chrUn_KK088237v1       5683959 314 -  22294289 I
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr2                 147424371 0 + 156412533 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21188098 1840 -  23169006 M
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-14646.000000
s hg38.chr8_KI270814v1_alt         85649 15 +    141812 --TGTCCAAG-------CTAAAC--T
s ponAbe2.chr8                  59055176 15 + 153482349 --TGTCCAAG-------CTAAAC--T
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48133784 15 + 100215132 --TGTCCAAG-------CTAAAC--T
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99341062 15 + 108792865 --TATGCAAG-------ATAAAC--C
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24007229 15 +  27210278 --TATGCAAG-------ATAAAC--T
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19211490 15 -  22931326 --TGGGCAAG-------ATAAAC--T
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2805880 15 -   6207710 --TGGGCAAG-------ATAAAC--T
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10841493 15 +  17242564 --TGGGCAAA-------ATAAAC--T
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84035715 15 +  91571448 --TGGGCAAG-------ATAAAC--T
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6809263 15 -  14545593 --TGGGCAAG-------ATAAAC--T
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134106391 14 + 140925898 --CGGGCAAG-------AC-AAC--T
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57839407 14 -  64289059 --TGGGCAAG-------AC-AAC--T
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13611676 14 -  19722643 --TGGGCAAG-------AC-AAC--T
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3034805 14 +   4816872 --TGGGCAAG-------AC-AAC--T
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19412504 15 -  23789964 --CAGGTAAG-------ATAAAC--T
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27619504 15 -  46401353 --TATGCAGG-------ATAAAT--T
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9966943 15 +  24341844 --TATGCAAG-------ATAAAC--T
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1033384 15 -   2788317 --TGTGTAAA-------TTAAAC--T
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530531488 10 + 748055161 --TAAGTA------------ATC--C
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    523183 10 +   3395230 --CAAGTA------------ATA--C
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL109592                104050 10 -    117391 --TAAGTA------------ATC--C
i macEug2.GL109592             C 0 C 0
s taeGut2.chr2                 147424371  7 + 156412533 -----------------TTAAAC--T
i taeGut2.chr2                 C 0 C 0
s xenTro7.KB022081                  3324 17 +     65226 --GATCCAAG-------TTTAGCGAT
i xenTro7.KB022081             I 1 C 0
s danRer10.chr2                 32324570 10 +  59543403 AGTTATTGAG----------------
i danRer10.chr2                C 0 C 0
s astMex1.KB882259               1465507 17 -   1566646 TGTTAGCAAGCTGTACT---------
i astMex1.KB882259             C 0 I 27
e xipMac1.JH556722                320730 4277 -   2306555 I
e gasAcu1.chrXV                  6160607 4779 +  16198764 I
e ornAna1.Contig30778               2960 1666 +      7217 I
e tetNig2.chr10                  6376320 2971 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120649                 19761 552 -    165821 I
e fr3.HE591725                    289183 523 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280499  0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH739256                321407  0 -    882412 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr3                  91313763  0 + 100405168 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1984803 4081 +   4979691 I
e chrPic2.chrUn_KK088237v1       5683959 314 -  22294289 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21188098 1840 -  23169006 M
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=145359.000000
s hg38.chr8_KI270814v1_alt         85664 21 +    141812 TACT---TATCCCTAGCCTAG-TCC
s ponAbe2.chr8                  59055191 21 + 153482349 TATT---TATCCCTAGCCTAG-TCC
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48133799 21 + 100215132 TACT---TATCCCTAGCCTAG-TCC
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99341077 21 + 108792865 TACT---TATCCCTGTACTGG-CCC
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24007244 21 +  27210278 TACT---TATCCCTGTACTGG-CCC
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19211505 21 -  22931326 TACT---AATCCTTAGACCAG-CCC
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2805895 21 -   6207710 TACT---AATCCTTAGACCAG-CCC
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10841508 17 +  17242564 T-------ATCCCTAGACTAG-CCC
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84035730 21 +  91571448 TACT---TATCCCTAGGCTAG-TCC
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6809278 21 -  14545593 TAAT---TATCCCTAGACTAA-TCC
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134106405 21 + 140925898 TACT---TATTCCTAGACTGG-CCC
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57839421 21 -  64289059 TATT---TATTCCTGGACTGG-TCC
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13611690 21 -  19722643 TACT---TATTCCTACACTAG-TCT
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3034819 21 +   4816872 TACT---TATTCCTAGACTAG-TCC
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19412519 22 -  23789964 GACT---TATCCCTAGACCGGCCCC
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27619519 21 -  46401353 TGCT---TACCCCTAGACTAG-TCC
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9966958 21 +  24341844 TACT---TATCCCTAGACTAG-CCC
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1033399 24 -   2788317 TATTTTATATCTCTAGGCTCA-TCC
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530531498 21 + 748055161 TACT---TATCACTGTAATAT-GCT
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    523193 21 +   3395230 CACT---TATTGCAGTTATAT-ATT
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL109592                104060 21 -    117391 CACT---TATCCCAGTTATAT-ACC
i macEug2.GL109592             C 0 C 0
s taeGut2.chr2                 147424378 18 + 156412533 T------TTTCTTTGTAGTTA-TTA
i taeGut2.chr2                 C 0 C 0
s xenTro7.KB022081                  3341 20 +     65226 TATA---T-TCCCTTGGCTTG-TTC
i xenTro7.KB022081             C 0 C 0
s danRer10.chr2                 32324580 10 +  59543403 CATT---TATCAC------------
i danRer10.chr2                C 0 I 6
e xipMac1.JH556722                320730 4277 -   2306555 I
e gasAcu1.chrXV                  6160607 4779 +  16198764 I
e ornAna1.Contig30778               2960 1666 +      7217 I
e tetNig2.chr10                  6376320 2971 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e astMex1.KB882259               1465524 27 -   1566646 I
e takFla1.KE120649                 19761 552 -    165821 I
e fr3.HE591725                    289183 523 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280499  0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH739256                321407  0 -    882412 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr3                  91313763  0 + 100405168 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1984803 4081 +   4979691 I
e chrPic2.chrUn_KK088237v1       5683959 314 -  22294289 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21188098 1840 -  23169006 M
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=490017.000000
s hg38.chr8_KI270814v1_alt         85685 72 +    141812 TGAA--AGGATCATTAATTTCTGAAATAAA-TCGTGTATGTAATCATAT--G-AAAAAT---------------A----ACCC----AGAGTACAGGCTTT
s ponAbe2.chr8                  59055212 72 + 153482349 TGAA--AGGAGCATTAATTTCTGAAATAAA-TGATGTATGTAATCATAT--G-AAAAAT---------------A----ACCC----AGAGTACAGGCTTT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48133820 72 + 100215132 TGAA--AGGAGCATTAATTTCTGAAATAAA-TGATGTATGTAATCCTAT--G-AAAAAT---------------A----ACCC----AGAGTACAGGCTTT
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99341098 76 + 108792865 TGAA--AGGAGCATTAATTTCTGCAATAAA-TGACGTATGTAATCCCAT--G-AAAAAT--------A---TAAA----ACCT----AGAGTACATGCTCT
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24007265 76 +  27210278 TGAA--AGGAGCATTAATTTCTGCAGTAAA-TGACGTATGTAATCCCAT--G-AAAAAT--------A---TAAA----ACCT----AGAGTACATGCTTT
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19211526 76 -  22931326 TGAA--AGGAGCATTAATATCTGAATAAAA-TGACATACGTGACCCCAT--G-AAAAAT--------A---AAAA----TCTT----ACAGGACGGGCTTT
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2805916 76 -   6207710 TGAA--AGGAGCATTAATATCTGAATAAAA-TGACATACGTGACCCCAT--G-AAAAAT--------A---AAAA----TCTT----ACAGGATGGGCTTT
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10841525 76 +  17242564 TGAA--AAGAGTATTAATTTCTGCAATAAA-TGACGTATGTGATCCCAG--G-ATAAAT--------G---GAGA----GCTT----AGAGCACAAGCTTT
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84035751 76 +  91571448 TGAA--AGGCGCATTAATTTCTCTAATAAA-TGATGTATGTGATCCCAT--G-AAAAAT--------A---AAGA----CCTT----AGAGCACAGGGTTT
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6809299 76 -  14545593 TGAA--AGGAGCATTAATTTCTGTAATAAA-TGACGTATGTGATCTCAT--G-AAAAAT--------A---AAGA----ACTT----AGAGCACAGGTTTT
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134106426 80 + 140925898 CGAA--AGGAACATTAATTTCTGTAACAAA-TGACGCATGCGATCCCAG--G-GAAAAG--------A---AAGA----GCATGAAAAAAACACAGGCTTT
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57839442 76 -  64289059 TGAA--AGGAGCATTAATTTCTGTAATAAA-TGATGTATGCAATCCCAT--G-AAAAAT--------A---AAGA----ACCT----AGGGTACAGGCTTT
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13611711 76 -  19722643 TGAA--AGGAGCATTAATTTCTGTAATAAA-TGATGCACACGATCCCAC--G-AAAAAT--------A---AAGA----ACTT----AGAGCTCGGGCTTT
i musFur1.GL896914             C 0 I 89
s odoRosDiv1.KB229025            3034840 76 +   4816872 TGAA--AGGAGCATTAATTTCTGTAATAAA-TGATGTATACTATTCCAT--G-AAAAAT--------A---AAGA----ACTT----AGAGCTCAGGCTTT
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19412541 77 -  23789964 TGAA--AGGATCATTAATTTCTGTAACAAA-TGACGTCTGTGATTCCAT--GAAAAAAT--------A---AAAA----GCTT----AGAGCACAAGTTTT
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27619540 74 -  46401353 TGAA--GGGAACATTAATATCTATAATAAA-TGATGTATGTGATCCCAG--G-ACAAAT--------G---AAGA----ATTT------AGCATAGGATTT
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9966979 74 +  24341844 TTAA--AGGAACATTAATATCTGTAATAAA-TGATGTCTGTGATCCCAT--G-AAGAGT--------A---AAGA----ACTT------AGCCTAGGATTT
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1033423 79 -   2788317 TGAA--AGGAGCATTATATTCTGTAATAAA-TGATATATGTGATTCCATGAG-AAAAAG--------A---AAGA----AATT---AAGAGCGCAGGTTTT
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530531519 79 + 748055161 TTAA--GAGAAAATTAATTATTGTGAT-TA-TGCTGTAAGAGAATTCAT--G-AACTAC--------A---ATATATCTACCT----AAGGGACATGTTCT
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    523214 74 +   3395230 TTAA--GAGATAAC---TCACTGCAAT-TA-TTCTATATGAGATTC--T--A-AACTAC--------A---ATGAATCCACCT----ACAGTATAAGTTCT
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL109592                104081 75 -    117391 TTAA--GAGATAA----TTATTATGAT-TA-GGCTGTATGAGATTCCGT--A-AACTAC--------A---ACAAATCTACCT----AAAGTACATGTTCT
i macEug2.GL109592             C 0 C 0
s taeGut2.chr2                 147424396 75 + 156412533 AGTA--ATAAACAGCAAC-----AAAAAAA-TACTGT------TTTCTT--C-AAAACTTTTCAG--A---AAGC----AGCTAGAAAAAATATTGGGTTT
i taeGut2.chr2                 C 0 C 0
s xenTro7.KB022081                  3361 79 +     65226 TTTA--ATGGTCATTAACTCATGAAATAAAGTGTTGAGCAAAGTCTTTA--G-GTGAAT---GAGCCA---ATGT----ACAT----TAGGTGCCAGC---
i xenTro7.KB022081             C 0 C 0
s danRer10.chr2                 32324596 56 +  59543403 TAAACTGAACACTTTGTTATGCAGTATAAA---------------GCAG--C-ACAAAG--------A---AATC----AACT----ACAGTA--------
i danRer10.chr2                I 6 C 0
s astMex1.KB882259               1465551 57 -   1566646 taaa--aaaatcattaatgtgCTTAACAGA---------------GCgt--g-acaatg--------acccaaac----aaCT----GTCTTA--------
i astMex1.KB882259             I 27 C 0
e xipMac1.JH556722                320730 4277 -   2306555 I
e gasAcu1.chrXV                  6160607 4779 +  16198764 I
e ornAna1.Contig30778               2960 1666 +      7217 I
e tetNig2.chr10                  6376320 2971 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120649                 19761 552 -    165821 I
e fr3.HE591725                    289183 523 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280499  0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH739256                321407  0 -    882412 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr3                  91313763  0 + 100405168 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1984803 4081 +   4979691 I
e chrPic2.chrUn_KK088237v1       5683959 314 -  22294289 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21188098 1840 -  23169006 M
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=61117.000000
s hg38.chr8_KI270814v1_alt         85757 15 +    141812 -TAAG-TAGATTAGTGG
s ponAbe2.chr8                  59055284 15 + 153482349 -TAAG-TAGATTAGTGG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48133892 15 + 100215132 -TAAG-TAGATTAGTGG
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99341174 15 + 108792865 -TAAG-TAGACTAGTGG
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24007341 15 +  27210278 -TAAG-TAGACTAGTGG
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19211602 15 -  22931326 -TAAT-TAGGTGAGCGC
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2805992 15 -   6207710 -TAAT-TAGGCGAGTGG
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10841601 15 +  17242564 -TAAT-CAGACTAGCGG
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84035827 15 +  91571448 -TAAT-TAGACTAGTGG
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6809375 15 -  14545593 -TAAT-TGGACTAGTGG
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134106506 15 + 140925898 -TAAC-GAGATGAGCAG
i felCat8.chrA3                C 0 I 65
s canFam3.chr17                 57839518 15 -  64289059 -TAAT-TAGATGAGTAG
i canFam3.chr17                C 0 C 0
s odoRosDiv1.KB229025            3034916 15 +   4816872 -GAAT-GCGACCAGCAG
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19412618 15 -  23789964 -CAAT-TAGAGTAATGA
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27619614 15 -  46401353 -TAAC-CAGACTACTGG
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9967053 15 +  24341844 -TAAC-TCGACTACTGG
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1033502 15 -   2788317 -TTAT-TAGGCTAGTGG
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530531598 15 + 748055161 -TAAG-TGGATAAGAGG
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    523288 14 +   3395230 -TTAA--AATTAAGAGG
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL109592                104156 16 -    117391 -TAAAGTAGATAAGAGG
i macEug2.GL109592             C 0 C 0
s taeGut2.chr2                 147424471  5 + 156412533 -GAAT-C----------
i taeGut2.chr2                 C 0 C 0
s xenTro7.KB022081                  3440 15 +     65226 -CCAG-TGTATCAATGG
i xenTro7.KB022081             C 0 I 30
s danRer10.chr2                 32324652 15 +  59543403 TATAA--AGATGAACAT
i danRer10.chr2                C 0 C 0
s astMex1.KB882259               1465608 16 -   1566646 TGCAA-CAACTGAAAGT
i astMex1.KB882259             C 0 C 0
e xipMac1.JH556722                320730 4277 -   2306555 I
e gasAcu1.chrXV                  6160607 4779 +  16198764 I
e musFur1.GL896914              13611787 89 -  19722643 I
e ornAna1.Contig30778               2960 1666 +      7217 I
e tetNig2.chr10                  6376320 2971 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120649                 19761 552 -    165821 I
e fr3.HE591725                    289183 523 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280499  0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH739256                321407  0 -    882412 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr3                  91313763  0 + 100405168 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1984803 4081 +   4979691 I
e chrPic2.chrUn_KK088237v1       5683959 314 -  22294289 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21188098 1840 -  23169006 M
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=35991.000000
s hg38.chr8_KI270814v1_alt         85772 7 +    141812 TGGTATT---
s ponAbe2.chr8                  59055299 7 + 153482349 TGGTATT---
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48133907 7 + 100215132 TGGTATT---
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99341189 7 + 108792865 TGGCAAT---
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24007356 7 +  27210278 TGGCACT---
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19211617 7 -  22931326 TGGCATT---
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2806007 7 -   6207710 TGGCATT---
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10841616 7 +  17242564 TAGCATT---
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84035842 7 +  91571448 TGGTACT---
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6809390 7 -  14545593 TGACATT---
i cerSim1.JH767782             C 0 C 0
s pteAle1.KB030580              19412633 7 -  23789964 TGGCATT---
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27619629 7 -  46401353 TAGCATT---
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9967068 7 +  24341844 TAGCATT---
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1033517 7 -   2788317 TGGCATT---
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530531613 7 + 748055161 TAATACT---
i monDom5.chr1                 C 0 I 30
s sarHar1.chr1_GL834688_random    523302 7 +   3395230 CAATAAC---
i sarHar1.chr1_GL834688_random C 0 I 34
s macEug2.GL109592                104172 7 -    117391 TGATACT---
i macEug2.GL109592             C 0 I 1353
s taeGut2.chr2                 147424476 7 + 156412533 TTGTAAT---
i taeGut2.chr2                 C 0 C 0
s danRer10.chr2                 32324667 7 +  59543403 ---TACTCTG
i danRer10.chr2                C 0 C 0
s astMex1.KB882259               1465624 7 -   1566646 ---gactgtt
i astMex1.KB882259             C 0 C 0
e xipMac1.JH556722                320730 4277 -   2306555 I
e gasAcu1.chrXV                  6160607 4779 +  16198764 I
e musFur1.GL896914              13611787 89 -  19722643 I
e odoRosDiv1.KB229025            3034931 0 +   4816872 C
e canFam3.chr17                 57839533 0 -  64289059 C
e felCat8.chrA3                134106521 65 + 140925898 I
e xenTro7.KB022081                  3455 30 +     65226 I
e ornAna1.Contig30778               2960 1666 +      7217 I
e tetNig2.chr10                  6376320 2971 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120649                 19761 552 -    165821 I
e fr3.HE591725                    289183 523 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221189              55280499 0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH739256                321407 0 -    882412 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr3                  91313763 0 + 100405168 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1984803 4081 +   4979691 I
e chrPic2.chrUn_KK088237v1       5683959 314 -  22294289 I
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21188098 1840 -  23169006 M
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-22586.000000
s hg38.chr8_KI270814v1_alt         85779 18 +    141812 TCCTT------GCCTTCTCTtata----
s ponAbe2.chr8                  59055306 18 + 153482349 TCCTT------GCCTTCTCttata----
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48133914 18 + 100215132 TCCTT------GCCTTCTCTtata----
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99341196 18 + 108792865 GCTTT------TCTTTCTCTTTTT----
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24007363 18 +  27210278 GCTCT------TCTTTCTCTTTTT----
i saiBol1.JH378126             C 0 I 1
s vicPac2.KB632437              19211624 19 -  22931326 TCCTTC-----CTTTTCtttctct----
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2806014 19 -   6207710 TCCTTT-----CTTTTCtttctct----
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10841623 15 +  17242564 TA---------GTTTTCtttctct----
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84035849 18 +  91571448 TCCTT------TTTTCCTTTCtct----
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6809397 18 -  14545593 TCCTT------TTTTTCtttttct----
i cerSim1.JH767782             C 0 C 0
s pteAle1.KB030580              19412640 18 -  23789964 TTCTT------TCTTTCTTTAAAA----
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27619636 24 -  46401353 TTCTTTTCTTCTCTCTCTTTTTTT----
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9967075 19 +  24341844 TTCTTT-----CCTCTCTTTTTTT----
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1033524 12 -   2788317 TTTT-------TCTCTCTT---------
i dasNov3.JH567436             C 0 C 0
s taeGut2.chr2                 147424483 18 + 156412533 ------CTATTGCTTTCCTGTGCA----
i taeGut2.chr2                 C 0 I 4
s danRer10.chr2                 32324674 17 +  59543403 ---------ACACTCAGATGCATCTG--
i danRer10.chr2                C 0 C 0
s astMex1.KB882259               1465631 19 -   1566646 ---------ctgcatattttagcttgtc
i astMex1.KB882259             C 0 C 0
e xipMac1.JH556722                320730 4277 -   2306555 I
e gasAcu1.chrXV                  6160607 4779 +  16198764 I
e musFur1.GL896914              13611787 89 -  19722643 I
e odoRosDiv1.KB229025            3034931  0 +   4816872 C
e canFam3.chr17                 57839533  0 -  64289059 C
e felCat8.chrA3                134106521 65 + 140925898 I
e xenTro7.KB022081                  3455 30 +     65226 I
e ornAna1.Contig30778               2960 1666 +      7217 I
e tetNig2.chr10                  6376320 2971 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120649                 19761 552 -    165821 I
e fr3.HE591725                    289183 523 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280499  0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH739256                321407  0 -    882412 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                104179 1353 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e sarHar1.chr1_GL834688_random    523309 34 +   3395230 I
e melGal1.chr3                  91313763  0 + 100405168 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1984803 4081 +   4979691 I
e chrPic2.chrUn_KK088237v1       5683959 314 -  22294289 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530531620 30 + 748055161 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21188098 1840 -  23169006 M
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-125050.000000
s hg38.chr8_KI270814v1_alt         85797 18 +    141812 taaata---------------catat----------atttata------
s ponAbe2.chr8                  59055324 18 + 153482349 taaata---------------tatat----------atttata------
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48133932 18 + 100215132 taaata---------------tatat----------atttata------
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99341214  8 + 108792865 AAAA-----------------------------------TATT------
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24007382  8 +  27210278 AAAA-----------------------------------AATT------
i saiBol1.JH378126             I 1 C 0
s vicPac2.KB632437              19211643 15 -  22931326 ttaa------------------aatt----------tttcatt------
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2806033 15 -   6207710 ttaa------------------aatt----------tttcatt------
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10841638 16 +  17242564 ttaa-----------------gaaat----------ttttatt------
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84035867 15 +  91571448 tt-a-----------------aaagt----------ttttatt------
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6809415 16 -  14545593 ttaa-----------------aaaat----------ttttatt------
i cerSim1.JH767782             C 0 C 0
s pteAle1.KB030580              19412658 26 -  23789964 AACA-----------------AAAACAAAAACGAAACTTTATT------
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27619660 33 -  46401353 TCCTCCCCTTtctttcttttcaaaaa----------aattatt------
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9967094 23 +  24341844 CCCTTGAAAAtttttttt--------------------ttatt------
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1033536 12 -   2788317 ---------------------AAAAA----------TTTTATT------
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530531650  7 + 748055161 ------------------------------------ACCtagc------
i monDom5.chr1                 I 30 C 0
s sarHar1.chr1_GL834688_random    523343  7 +   3395230 ------------------------------------ACCTAGT------
i sarHar1.chr1_GL834688_random I 34 C 0
s taeGut2.chr2                 147424505 16 + 156412533 AAAA-----------------CAATA----------ATTTACA------
i taeGut2.chr2                 I 4 C 0
s xenTro7.KB022081                  3485 12 +     65226 ---------------------TAAAT----------TCACATT------
i xenTro7.KB022081             I 30 C 0
s danRer10.chr2                 32324691  7 +  59543403 ------------------------------------ATGTACA------
i danRer10.chr2                C 0 C 0
s astMex1.KB882259               1465650 18 -   1566646 ---------------------caaaa----------atgtgtGTCCTTA
i astMex1.KB882259             C 0 N 0
e xipMac1.JH556722                320730 4277 -   2306555 I
e gasAcu1.chrXV                  6160607 4779 +  16198764 I
e musFur1.GL896914              13611787 89 -  19722643 I
e odoRosDiv1.KB229025            3034931  0 +   4816872 C
e canFam3.chr17                 57839533  0 -  64289059 C
e felCat8.chrA3                134106521 65 + 140925898 I
e ornAna1.Contig30778               2960 1666 +      7217 I
e tetNig2.chr10                  6376320 2971 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120649                 19761 552 -    165821 I
e fr3.HE591725                    289183 523 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280499  0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH739256                321407  0 -    882412 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                104179 1353 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr3                  91313763  0 + 100405168 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1984803 4081 +   4979691 I
e chrPic2.chrUn_KK088237v1       5683959 314 -  22294289 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21188098 1840 -  23169006 M
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=14159.000000
s hg38.chr8_KI270814v1_alt         85815 12 +    141812 a-----taga----atataC-T
s ponAbe2.chr8                  59055342 12 + 153482349 a-----taGA----ATATAC-T
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48133950 12 + 100215132 a-----taga----atatGG-T
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99341222 12 + 108792865 A-----TGGA----ATACAC-T
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24007390 12 +  27210278 A-----TGGA----ATATAC-T
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19211658 12 -  22931326 a-----caga----atatac-c
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2806048 12 -   6207710 a-----taga----atacac-c
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10841654 12 +  17242564 a-----taga----atatac-c
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84035882 12 +  91571448 a-----taga----atatac-c
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6809431 12 -  14545593 a-----caga----atacac-c
i cerSim1.JH767782             C 0 C 0
s canFam3.chr17                 57839533  7 -  64289059 --------------CTTTGC-C
i canFam3.chr17                C 0 C 0
s odoRosDiv1.KB229025            3034931  7 +   4816872 --------------CCATGC-C
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19412684 16 -  23789964 A-----TAGAATATATACAC-C
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27619693 11 -  46401353 a-----taca----atata--c
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9967117 12 +  24341844 a-----taca----atatat-c
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1033548 13 -   2788317 A-----TAGT----GTACACAA
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530531657 17 + 748055161 attcttttga----acatat-a
i monDom5.chr1                 C 0 I 1355
s sarHar1.chr1_GL834688_random    523350 16 +   3395230 A-TCAtttga----atatat-c
i sarHar1.chr1_GL834688_random C 0 I 14
s taeGut2.chr2                 147424521 12 + 156412533 A-----TGAA----ATTTTC-A
i taeGut2.chr2                 C 0 C 0
s xenTro7.KB022081                  3497 12 +     65226 A-----CACA----ACACGT-T
i xenTro7.KB022081             C 0 I 4
s danRer10.chr2                 32324698 12 +  59543403 -----GTAGC----ATATGA-G
i danRer10.chr2                C 0 C 0
e xipMac1.JH556722                320730 4277 -   2306555 I
e gasAcu1.chrXV                  6160607 4779 +  16198764 I
e musFur1.GL896914              13611787 89 -  19722643 I
e felCat8.chrA3                134106521 65 + 140925898 I
e ornAna1.Contig30778               2960 1666 +      7217 I
e tetNig2.chr10                  6376320 2971 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120649                 19761 552 -    165821 I
e fr3.HE591725                    289183 523 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280499  0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH739256                321407  0 -    882412 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                104179 1353 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr3                  91313763  0 + 100405168 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1984803 4081 +   4979691 I
e chrPic2.chrUn_KK088237v1       5683959 314 -  22294289 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21188098 1840 -  23169006 M
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=40585.000000
s hg38.chr8_KI270814v1_alt         85827 4 +    141812 AAAT
s ponAbe2.chr8                  59055354 4 + 153482349 AAAT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48133962 4 + 100215132 AAAT
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99341234 4 + 108792865 AAAT
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24007402 4 +  27210278 AAAT
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19211670 4 -  22931326 aaat
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2806060 4 -   6207710 aaat
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10841666 4 +  17242564 aaat
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84035894 3 +  91571448 -aat
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6809443 4 -  14545593 aaat
i cerSim1.JH767782             C 0 C 0
s canFam3.chr17                 57839540 4 -  64289059 ACAC
i canFam3.chr17                C 0 C 0
s odoRosDiv1.KB229025            3034938 4 +   4816872 ACAC
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19412700 4 -  23789964 AAAT
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27619704 4 -  46401353 aaat
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9967129 4 +  24341844 aaat
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1033561 4 -   2788317 aaat
i dasNov3.JH567436             C 0 C 0
s sarHar1.chr1_GL834688_random    523380 4 +   3395230 atac
i sarHar1.chr1_GL834688_random I 14 C 0
s taeGut2.chr2                 147424533 4 + 156412533 AGAT
i taeGut2.chr2                 C 0 n 0
s danRer10.chr2                 32324710 4 +  59543403 AGAT
i danRer10.chr2                C 0 C 0
e xipMac1.JH556722                320730 4277 -   2306555 I
e gasAcu1.chrXV                  6160607 4779 +  16198764 I
e musFur1.GL896914              13611787 89 -  19722643 I
e felCat8.chrA3                134106521 65 + 140925898 I
e xenTro7.KB022081                  3509 4 +     65226 I
e ornAna1.Contig30778               2960 1666 +      7217 I
e tetNig2.chr10                  6376320 2971 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120649                 19761 552 -    165821 I
e fr3.HE591725                    289183 523 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221189              55280499 0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH739256                321407 0 -    882412 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                104179 1353 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr3                  91313763 0 + 100405168 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1984803 4081 +   4979691 I
e chrPic2.chrUn_KK088237v1       5683959 314 -  22294289 I
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530531674 1355 + 748055161 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21188098 1840 -  23169006 M
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=30800.000000
s hg38.chr8_KI270814v1_alt         85831 9 +    141812 GCCCACAAT-
s ponAbe2.chr8                  59055358 9 + 153482349 GCACACAAT-
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48133966 9 + 100215132 GCACACAAT-
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99341238 8 + 108792865 GCACACAA--
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24007406 8 +  27210278 GCACACAA--
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19211674 8 -  22931326 gcacacag--
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2806064 8 -   6207710 gcacacag--
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10841670 8 +  17242564 gcacacag--
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84035897 8 +  91571448 gtacacag--
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6809447 8 -  14545593 gcacacag--
i cerSim1.JH767782             C 0 C 0
s canFam3.chr17                 57839544 8 -  64289059 ACACACAG--
i canFam3.chr17                C 0 C 0
s odoRosDiv1.KB229025            3034942 8 +   4816872 GCACACAG--
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19412704 8 -  23789964 GCAAATAG--
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27619708 8 -  46401353 acctgcaa--
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9967133 8 +  24341844 gcatgtaa--
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1033565 8 -   2788317 gcacacaa--
i dasNov3.JH567436             C 0 C 0
s sarHar1.chr1_GL834688_random    523384 8 +   3395230 aCCTATAA--
i sarHar1.chr1_GL834688_random C 0 I 1273
s xenTro7.KB022081                  3513 7 +     65226 -CTTAGAA--
i xenTro7.KB022081             I 4 I 1
s danRer10.chr2                 32324714 9 +  59543403 ATGGACTG-T
i danRer10.chr2                C 0 C 0
e xipMac1.JH556722                320730 4277 -   2306555 I
e gasAcu1.chrXV                  6160607 4779 +  16198764 I
e musFur1.GL896914              13611787 89 -  19722643 I
e felCat8.chrA3                134106521 65 + 140925898 I
e ornAna1.Contig30778               2960 1666 +      7217 I
e tetNig2.chr10                  6376320 2971 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120649                 19761 552 -    165821 I
e fr3.HE591725                    289183 523 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221189              55280499 0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH739256                321407 0 -    882412 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                104179 1353 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr3                  91313763 0 + 100405168 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1984803 4081 +   4979691 I
e chrPic2.chrUn_KK088237v1       5683959 314 -  22294289 I
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530531674 1355 + 748055161 I
e taeGut2.chr2                 147424537 0 + 156412533 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21188098 1840 -  23169006 M
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=14136.000000
s hg38.chr8_KI270814v1_alt         85840 6 +    141812 AGCAAG
s ponAbe2.chr8                  59055367 6 + 153482349 AGCAAG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48133975 6 + 100215132 AGCAAG
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99341246 3 + 108792865 ---AAG
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24007414 3 +  27210278 ---AAG
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19211682 3 -  22931326 ---aga
i vicPac2.KB632437             C 0 I 23
s camFer1.KB017763               2806072 3 -   6207710 ---aga
i camFer1.KB017763             C 0 I 23
s orcOrc1.KB316907              10841678 3 +  17242564 ---aca
i orcOrc1.KB316907             C 0 I 23
s equCab2.chr15                 84035905 3 +  91571448 ---agg
i equCab2.chr15                C 0 I 23
s cerSim1.JH767782               6809455 3 -  14545593 ---aga
i cerSim1.JH767782             C 0 I 8
s canFam3.chr17                 57839552 3 -  64289059 ---AGG
i canFam3.chr17                C 0 I 20
s odoRosDiv1.KB229025            3034950 3 +   4816872 ---AGC
i odoRosDiv1.KB229025          C 0 I 4
s pteAle1.KB030580              19412712 3 -  23789964 ---AAG
i pteAle1.KB030580             C 0 I 4
s loxAfr3.scaffold_20           27619716 3 -  46401353 ---aag
i loxAfr3.scaffold_20          C 0 I 17
s triMan1.JH594629               9967141 3 +  24341844 ---aag
i triMan1.JH594629             C 0 I 17
s dasNov3.JH567436               1033573 3 -   2788317 ---aag
i dasNov3.JH567436             C 0 I 15
s xenTro7.KB022081                  3521 3 +     65226 ---AAG
i xenTro7.KB022081             I 1 I 3
s danRer10.chr2                 32324723 6 +  59543403 GGTAAT
i danRer10.chr2                C 0 C 0
e xipMac1.JH556722                320730 4277 -   2306555 I
e gasAcu1.chrXV                  6160607 4779 +  16198764 I
e musFur1.GL896914              13611787 89 -  19722643 I
e felCat8.chrA3                134106521 65 + 140925898 I
e ornAna1.Contig30778               2960 1666 +      7217 I
e tetNig2.chr10                  6376320 2971 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120649                 19761 552 -    165821 I
e fr3.HE591725                    289183 523 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221189              55280499 0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH739256                321407 0 -    882412 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                104179 1353 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e sarHar1.chr1_GL834688_random    523392 1273 +   3395230 I
e melGal1.chr3                  91313763 0 + 100405168 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1984803 4081 +   4979691 I
e chrPic2.chrUn_KK088237v1       5683959 314 -  22294289 I
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530531674 1355 + 748055161 I
e taeGut2.chr2                 147424537 0 + 156412533 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21188098 1840 -  23169006 M
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-7093.000000
s hg38.chr8_KI270814v1_alt         85846 21 +    141812 ---GTGCcttcacccagttatg--ac
s ponAbe2.chr8                  59055373 21 + 153482349 ---GTGCcttcacccagttatg--ac
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48133981 20 + 100215132 ---GTGCCTTCACCCAGttatg--a-
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99341249 21 + 108792865 ---GTGCTGCCATCCAGTTATG--AC
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24007417 21 +  27210278 ---GTGCTGCCATCCACTTATG--AC
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19211708 21 -  22931326 ---aacccatgagctacttaca--ac
i vicPac2.KB632437             I 23 I 9
s camFer1.KB017763               2806098 21 -   6207710 ---aacccatgagctacttata--ac
i camFer1.KB017763             I 23 I 9
s orcOrc1.KB316907              10841704 21 +  17242564 ---tacctgtcagctagctata--gc
i orcOrc1.KB316907             I 23 I 8
s equCab2.chr15                 84035931 21 +  91571448 ---tactcatcacccagttata--ac
i equCab2.chr15                I 23 I 8
s cerSim1.JH767782               6809466 21 -  14545593 ---tacccaccacccagttaca--ac
i cerSim1.JH767782             I 8 I 8
s canFam3.chr17                 57839575 17 -  64289059 ---TTCGCACTGCCCAGCTA------
i canFam3.chr17                I 20 C 0
s pteAle1.KB030580              19412719  8 -  23789964 ---------------AGAGAGA--G-
i pteAle1.KB030580             I 4 C 0
s loxAfr3.scaffold_20           27619736 21 -  46401353 ---tacccatcatctaaatata--cc
i loxAfr3.scaffold_20          I 17 I 8
s triMan1.JH594629               9967161 23 +  24341844 ---tacccatcatgcaaatataattt
i triMan1.JH594629             I 17 I 8
s dasNov3.JH567436               1033591 21 -   2788317 ---tacttattacccagatgta--ac
i dasNov3.JH567436             I 15 I 8
s xenTro7.KB022081                  3527 17 +     65226 -------TTTCACTGAATCATG--TG
i xenTro7.KB022081             I 3 C 0
s danRer10.chr2                 32324729 24 +  59543403 GCAATTGCTTTATCAGATTTTC--CC
i danRer10.chr2                C 0 C 0
e xipMac1.JH556722                320730 4277 -   2306555 I
e gasAcu1.chrXV                  6160607 4779 +  16198764 I
e musFur1.GL896914              13611787 89 -  19722643 I
e odoRosDiv1.KB229025            3034953  4 +   4816872 I
e felCat8.chrA3                134106521 65 + 140925898 I
e ornAna1.Contig30778               2960 1666 +      7217 I
e tetNig2.chr10                  6376320 2971 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120649                 19761 552 -    165821 I
e fr3.HE591725                    289183 523 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280499  0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH739256                321407  0 -    882412 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                104179 1353 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e sarHar1.chr1_GL834688_random    523392 1273 +   3395230 I
e melGal1.chr3                  91313763  0 + 100405168 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1984803 4081 +   4979691 I
e chrPic2.chrUn_KK088237v1       5683959 314 -  22294289 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530531674 1355 + 748055161 I
e taeGut2.chr2                 147424537  0 + 156412533 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21188098 1840 -  23169006 M
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=37682.000000
s hg38.chr8_KI270814v1_alt         85867 8 +    141812 actcctgg
s ponAbe2.chr8                  59055394 8 + 153482349 actcctgg
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99341270 8 + 108792865 ACTCCTGG
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24007438 8 +  27210278 ACTCCCAG
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19211738 8 -  22931326 actcatgg
i vicPac2.KB632437             I 9 C 0
s camFer1.KB017763               2806128 8 -   6207710 actcacag
i camFer1.KB017763             I 9 C 0
s orcOrc1.KB316907              10841733 8 +  17242564 actcacag
i orcOrc1.KB316907             I 8 C 0
s equCab2.chr15                 84035960 8 +  91571448 actcatga
i equCab2.chr15                I 8 C 0
s cerSim1.JH767782               6809495 8 -  14545593 actcatga
i cerSim1.JH767782             I 8 C 0
s felCat8.chrA3                134106586 8 + 140925898 actcatgg
i felCat8.chrA3                I 65 I 3
s canFam3.chr17                 57839592 2 -  64289059 ------GA
i canFam3.chr17                C 0 C 0
s pteAle1.KB030580              19412727 8 -  23789964 AATCATAC
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27619765 8 -  46401353 acttgtgg
i loxAfr3.scaffold_20          I 8 C 0
s triMan1.JH594629               9967192 8 +  24341844 actcatgg
i triMan1.JH594629             I 8 C 0
s dasNov3.JH567436               1033620 8 -   2788317 actcatag
i dasNov3.JH567436             I 8 C 0
s xenTro7.KB022081                  3544 4 +     65226 ACTT----
i xenTro7.KB022081             C 0 C 0
s danRer10.chr2                 32324753 8 +  59543403 ACTCTCAG
i danRer10.chr2                C 0 C 0
e xipMac1.JH556722                320730 4277 -   2306555 I
e gasAcu1.chrXV                  6160607 4779 +  16198764 I
e musFur1.GL896914              13611787 89 -  19722643 I
e odoRosDiv1.KB229025            3034953 4 +   4816872 I
e ornAna1.Contig30778               2960 1666 +      7217 I
e tetNig2.chr10                  6376320 2971 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120649                 19761 552 -    165821 I
e fr3.HE591725                    289183 523 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221189              55280499 0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH739256                321407 0 -    882412 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                104179 1353 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e sarHar1.chr1_GL834688_random    523392 1273 +   3395230 I
e melGal1.chr3                  91313763 0 + 100405168 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1984803 4081 +   4979691 I
e chrPic2.chrUn_KK088237v1       5683959 314 -  22294289 I
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530531674 1355 + 748055161 I
e taeGut2.chr2                 147424537 0 + 156412533 I
e nomLeu3.chr16                 48134001 0 + 100215132 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21188098 1840 -  23169006 M
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=17710.000000
s hg38.chr8_KI270814v1_alt         85875 37 +    141812 gcgac------catg--tgtcacct---------gt---------------accctattc--cctgtcctg
s ponAbe2.chr8                  59055402 37 + 153482349 gccac------cctg--tgtcacct---------gt---------------accctattc--cctgtcctg
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48134001 36 + 100215132 -ccac------cgtg--tgtcacct---------gt---------------accctattc--cttgtcctg
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99341278 36 + 108792865 GCCAC------C-TG--TGTCACCT---------GT---------------GCcctactc--cctgccctg
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24007446 36 +  27210278 GCCAC------C-TG--TATCATCT---------GT---------------GCCCTACTC--CCTGCCCTG
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19211746 37 -  22931326 cccat------tctg--cttcactt---------ac---------------accctgcac--tctgcccta
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2806136 37 -   6207710 cccat------tttg--cttcactt---------ac---------------accctgcac--tctgcccta
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10841741 37 +  17242564 cccat------cctg--tttcactt---------at---------------accccgccc--tctgccctg
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84035968 37 +  91571448 cccat------cttg--tttcacct---------at---------------accctaccc--tctgtccca
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6809503 37 -  14545593 cccat------ctta--tttcacct---------at---------------actctaccc--tctgcccca
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134106597 34 + 140925898 ---gt------ggtg--tttgaccc---------ac---------------accctgccc--tctgcctta
i felCat8.chrA3                I 3 C 0
s canFam3.chr17                 57839594 32 -  64289059 ---GT-------GAG--TATGAACTCAGGACCAGAT---------------ACCCCACC------------
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13611876 27 -  19722643 ---GTCA---CGGTG--TGTGACCT---------AC---------------ACCCTCCC------------
i musFur1.GL896914             I 89 C 0
s pteAle1.KB030580              19412735 39 -  23789964 ------ACGACAAGA--ATTAGCTC---------GT---------------GGCCCGTCTCATTTCACCTA
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27619773 38 -  46401353 cccat------gttgt-ttttacct---------at---------------accctatcc--tctgcgcta
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9967200 38 +  24341844 ctcat------cttgt-ttttacct---------at---------------accctatcc--tctgcacta
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1033628 38 -   2788317 tccac------atcttgtttcaact---------at---------------gtccta-cc--tctgtccta
i dasNov3.JH567436             C 0 C 0
s xenTro7.KB022081                  3548 35 +     65226 -CCAT------GTGA--CATTA-CT---------AA---------------GCTCCATTT--TTACTCATG
i xenTro7.KB022081             C 0 C 0
s danRer10.chr2                 32324761 41 +  59543403 -------------------GAACCT---------ATTTTCTGGATGTAATGACGTTATTC--ACTTTGCTG
i danRer10.chr2                C 0 N 0
e xipMac1.JH556722                320730 4277 -   2306555 I
e gasAcu1.chrXV                  6160607 4779 +  16198764 I
e odoRosDiv1.KB229025            3034953  4 +   4816872 I
e ornAna1.Contig30778               2960 1666 +      7217 I
e tetNig2.chr10                  6376320 2971 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120649                 19761 552 -    165821 I
e fr3.HE591725                    289183 523 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280499  0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH739256                321407  0 -    882412 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                104179 1353 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e sarHar1.chr1_GL834688_random    523392 1273 +   3395230 I
e melGal1.chr3                  91313763  0 + 100405168 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1984803 4081 +   4979691 I
e chrPic2.chrUn_KK088237v1       5683959 314 -  22294289 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530531674 1355 + 748055161 I
e taeGut2.chr2                 147424537  0 + 156412533 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21188098 1840 -  23169006 M
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=30495.000000
s hg38.chr8_KI270814v1_alt         85912 8 +    141812 gctttaat
s ponAbe2.chr8                  59055439 8 + 153482349 ggtttaat
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48134037 8 + 100215132 ggtttaat
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99341314 8 + 108792865 ggctttat
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24007482 8 +  27210278 GGCTTAAT
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19211783 8 -  22931326 tgattatt
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2806173 8 -   6207710 tgattatc
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10841778 8 +  17242564 agattatt
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84036005 8 +  91571448 ggattatt
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6809540 8 -  14545593 ggattatt
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134106631 8 + 140925898 ggactgct
i felCat8.chrA3                C 0 C 0
s pteAle1.KB030580              19412774 8 -  23789964 ggattatt
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27619811 8 -  46401353 gaattatt
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9967238 8 +  24341844 ggattatt
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1033666 8 -   2788317 acactatt
i dasNov3.JH567436             C 0 C 0
s xenTro7.KB022081                  3583 8 +     65226 GCTCTAGT
i xenTro7.KB022081             C 0 N 0
e xipMac1.JH556722                320730 4277 -   2306555 I
e gasAcu1.chrXV                  6160607 4779 +  16198764 I
e musFur1.GL896914              13611903 0 -  19722643 C
e odoRosDiv1.KB229025            3034953 4 +   4816872 I
e canFam3.chr17                 57839626 0 -  64289059 C
e ornAna1.Contig30778               2960 1666 +      7217 I
e tetNig2.chr10                  6376320 2971 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120649                 19761 552 -    165821 I
e fr3.HE591725                    289183 523 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221189              55280499 0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH739256                321407 0 -    882412 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                104179 1353 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e sarHar1.chr1_GL834688_random    523392 1273 +   3395230 I
e melGal1.chr3                  91313763 0 + 100405168 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1984803 4081 +   4979691 I
e chrPic2.chrUn_KK088237v1       5683959 314 -  22294289 I
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530531674 1355 + 748055161 I
e taeGut2.chr2                 147424537 0 + 156412533 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21188098 1840 -  23169006 M
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=383376.000000
s hg38.chr8_KI270814v1_alt         85920  85 +    141812 ctgaaagtaaaccctgaaaggc--aacatttactctgcaaatatttcagtctgtc-tctctacaagaaa-------------------------ggaGTGCTAA-CTTTTTACC
s ponAbe2.chr8                  59055447  85 + 153482349 ctgaaagtaaaccctgaaaggc--aacatttactctgcaaatatttcagtctgtc-tctctacaagaaa-------------------------gggaTGCTAA-CTTTTTACC
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48134045  85 + 100215132 ctgaaagtaaaccctgaaaggc--aacatttactctgcaaatatttcagtctgtc-tttctacaagata-------------------------ggaatgctAA-CTTTTTACC
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99341322  81 + 108792865 ctgaaagtaaaccctgaaagac--aacatttaaactgcaaagatttcaggatgtc-tctctaaaggaaa-------------------------ggCACTCTAA-----TTGAG
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24007490  40 +  27210278 CTGAAAGTAAACCCTGAAAGAC--AAC-------------------------------------------------------------------GGAACTCTAA-----TTGAT
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19211791  87 -  22931326 ctgaaattaaatccagaaagatgtaacatttaatctgcaagcattttagtatatc-tctctaaaagaaa-------------------------gggactttGATTTTTTTTC-
i vicPac2.KB632437             C 0 I 10
s camFer1.KB017763               2806181  86 -   6207710 ctgaaattaaatccagaaagatgtgacatttaatctgtaagcattttagtatatc-tctctaaaagaaa-------------------------gggattttGA-TTTTTTTC-
i camFer1.KB017763             C 0 I 10
s orcOrc1.KB316907              10841786  86 +  17242564 ctgaaattaaacctggaaagacataacatttaatcttcaagtactttagtatctc-tctctaaaagaaa-------------------------gggactctGA-TTTTTTTC-
i orcOrc1.KB316907             C 0 I 10
s equCab2.chr15                 84036013  87 +  91571448 ctgaaattaaacccaaaaacacataacatttactctgcaagtattttagtgtatc-tctctaaaacaaa-------------------------gggactCTGA-CTTTTTCTA
i equCab2.chr15                C 0 I 8
s cerSim1.JH767782               6809548  64 -  14545593 ctgaaattaaaccc-----------------actctgcaagtattttagtg-------tctaaaagaaa-------------------------gggactctGA-CTTTTTCTA
i cerSim1.JH767782             C 0 I 8
s felCat8.chrA3                134106639 107 + 140925898 ctaaaattaaactcagaaa-----aacatttaatctgcaagtattttagtacctc-tctctacaaaaaaaaaaAAAAAAAAAAAAAGGCAGGGGGGGACTCTGA-CTTTTTCTA
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57839626  69 -  64289059 -------------CAGAGA-----ACCATTTAATCTCCAAGTGTTTTAGTACCTC-TCTCTACAAAAAAATA----------------------GGGACACTGA-CTTTTT---
i canFam3.chr17                C 0 I 3
s musFur1.GL896914              13611903  76 -  19722643 -------------CAGAGA-----AACACCTCATTGGCAAGAGTTTTAGTACCTC-CCTCCACAAATAAAAAA------------------TGGGGGATTCTGA-CTTTTTCAA
i musFur1.GL896914             C 0 I 8
s pteAle1.KB030580              19412782  88 -  23789964 ctgaaattaaacccagaaagacataacatttaatctgcaagtatttcagtatctcttctctcaaaggaa-------------------------aggactctGA-CTTGTTCTA
i pteAle1.KB030580             C 0 I 8
s loxAfr3.scaffold_20           27619819  87 -  46401353 ttgaaattaaacccagaaagatataacatttaatctgcaaatatttcagtttatc-tttctgaaaggta-------------------------gggacCCTGA-CTTTTCCTA
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9967246  87 +  24341844 ctgaaattaaagccagaaagacgtaacattcaatctacatatatttcagtgtatc-tttctaaaagaaa-------------------------gggactctGA-CTTTTTCTA
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1033674  79 -   2788317 ctgaaactaaaaccaaaaagacgtaacatttaatctgtaaata--------tagt-tctttaaaagaaa-------------------------gggactctGG-CTTTTTATA
i dasNov3.JH567436             C 0 C 0
e xipMac1.JH556722                320730 4277 -   2306555 I
e gasAcu1.chrXV                  6160607 4779 +  16198764 I
e odoRosDiv1.KB229025            3034953   4 +   4816872 I
e ornAna1.Contig30778               2960 1666 +      7217 I
e tetNig2.chr10                  6376320 2971 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382   0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820   0 -   5414369 I
e araMac1.AOUJ01470298               637   0 -       895 I
e takFla1.KE120649                 19761 552 -    165821 I
e fr3.HE591725                    289183 523 -    411779 I
e ficAlb2.chr2                 148476508   0 + 157563209 I
e anoCar2.chr1                 148577473   4 + 263920458 I
e pseHum1.KB221189              55280499   0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214   0 -  25666195 I
e allMis1.JH739256                321407   0 -    882412 I
e falPer1.KB390952               2753956   0 -  18327016 I
e falChe1.KB397350               1707310   0 -   3649919 I
e macEug2.GL109592                104179 1353 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e sarHar1.chr1_GL834688_random    523392 1273 +   3395230 I
e melGal1.chr3                  91313763   0 + 100405168 I
e anaPla1.KB742696               1254472   0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1984803 4081 +   4979691 I
e chrPic2.chrUn_KK088237v1       5683959 314 -  22294289 I
e pelSin1.JH211373               2650239   0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530531674 1355 + 748055161 I
e taeGut2.chr2                 147424537   0 + 156412533 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21188098 1840 -  23169006 M
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=369359.000000
s hg38.chr8_KI270814v1_alt         86005 107 +    141812 ---------TGATGAATCTCA-ACACATATAACCCTGCTTTAAGGCC----AACGACAGGAATGTAAACGTCACCTACATCCTCCTGGGGTCTC--------------C--------------------------------------------------------------------------------------------------------------------------TACAGCTCTTCTGTCTGAAATTCAGG
s ponAbe2.chr8                  59055532 107 + 153482349 ---------TGATGAATCTCA-ACACATATAACCCTGCTTTAAGTCC----AACGACAGGAATGTAAATGTCACCTACATCCTCTTGGGGTCTC--------------C--------------------------------------------------------------------------------------------------------------------------TACTGCTCTTCTGTCTGAAATTCAGG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48134130 107 + 100215132 ---------TGATGAATCTCA-ACACATATAAGCCTGCTTTAAGTCC----AACGACAGGAAAGTAAACGTCACCTACATCCTCCTGGGGTCTC--------------C--------------------------------------------------------------------------------------------------------------------------TACTGCTCTTCTGTCTGAAATTCAGG
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99341403 107 + 108792865 ---------AGATGAATCCCA-ACACATCTAACCCTGTTTTAAATCT----GACGACAGAAATAGAAAGGTCCCGCACATCCTCCTGGGGTCTC--------------C--------------------------------------------------------------------------------------------------------------------------TACTGGTCTTCCATCTGCAGTTCAGG
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24007530 107 +  27210278 ---------AGATGAATCTCA-ACACATCTAACCCTGTTTTAAACCT----GACGACAGAAATAGAAAGGTCCCACACATCCTCCTGGGGTCTC--------------C--------------------------------------------------------------------------------------------------------------------------TATTGGTCTCCCATCTGCAATTCAGG
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19211888 101 -  22931326 ---------AGAAT---CTCA-ACACATGTACCCTTGATTCGGGCCCCAA-ACCCACAGGAATATAAAAGCCATTCACCTTCTCCTGAGGTCTC----------------------------------------------------------------------------------------------------------------------------------------------CTATTCTGTCTGGAACTTAGG
i vicPac2.KB632437             I 10 C 0
s camFer1.KB017763               2806277 110 -   6207710 ---------AGAAT---CTCA-ACACATGTACCCTTGATTCAGGCCCCTA-ACCCACAGGAATATAAAAGCCATTCACCTTCTCCTGAGGTCTC--------------CTGA-----------------------------------------------------------------------------------------------------------------------TTCCACTATTCTGTCTGGAACTTAGG
i camFer1.KB017763             I 10 C 0
s orcOrc1.KB316907              10841882 110 +  17242564 ---------GGAATCTCCTCA-ACACATGTACCCCTGATCTGGACCCCAA-A---ACAAGAATATAAAAGCCATTCACCTTCTCCTGAGGTCTC--------------CCGA-----------------------------------------------------------------------------------------------------------------------TTCCACAATTCTGCCTGGAACTCAGG
i orcOrc1.KB316907             I 10 C 0
s equCab2.chr15                 84036108 110 +  91571448 ---------GGAATCTCTCCA-ACACATGTCACTCTGATTTGGGCCC----AACAATAAGAAGACAAAAGCCATTCGTCTTCTCCTGAGGTCTC--------------TCGA-----------------------------------------------------------------------------------------------------------------------TTTCACTCTTCTGTCTGGAACATAGG
i equCab2.chr15                I 8 C 0
s cerSim1.JH767782               6809620 110 -  14545593 ---------GGAGTCTCTCCA-ACACATGTCACCCTGATTTGGGCTC----AACAGTAAGAGGGTAAAAGCCATTCACCTTCTCCTGAGGTCTC--------------TCGA-----------------------------------------------------------------------------------------------------------------------TTCCACTCTTCTGTCTGGAATGTAGA
i cerSim1.JH767782             I 8 C 0
s felCat8.chrA3                134106746 237 + 140925898 ---------CGA-----CCAGGAGAGATGTAACCCTGATTTGGGCCCC---AAC---AAGGATATAAAAGCCATTCACCTTCTCCTGAGGTTTTTGTAGAGAGAGGTACTGAAATACTAAAACACAAGAGAAGGTGAATGGCTTTTATATCCTTGTTGTTGGGGCCCAAATCAGGGTTACATCTTTCCTGTTCATAGAAAAGTCAGAACCCCCCCCCCACCTTTTTTTTTTTCCTACTCTTGCGTCTGGCACTTAGG
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57839698 105 -  64289059 ---------TGAATA-------GGAGATGTAACCCTGATTTGGGCCCCCAGAGC---AATGACAGAAAGGCTGTTCACCTTCTCCTGAGGTCTC--------------CTGA-----------------------------------------------------------------------------------------------------------------------TTCCACTCTTCTGTCTGGAACTTCGG
i canFam3.chr17                I 3 C 0
s musFur1.GL896914              13611987 111 -  19722643 ---------GGAATGTCCCCTGAGAGATGTACCCCTGATTTGGGCCC----AACAACAACGATATCAAAGGCTTTCACTTTCTCCTGGGGTCTC--------------CTGA-----------------------------------------------------------------------------------------------------------------------TTCTGCTCTTCAATCTGGAACTTGGG
i musFur1.GL896914             I 8 C 0
s odoRosDiv1.KB229025            3034957  82 +   4816872 ---------GGAAAATCCCAGCACGCACACACT----------GCCC----AGC-------------------TACACCTTCTACTGAGGTCTC--------------CTGA-----------------------------------------------------------------------------------------------------------------------TTCCACTCTTCTATCTGGAACTTAGG
i odoRosDiv1.KB229025          I 4 C 0
s pteAle1.KB030580              19412878 108 -  23789964 ---------CGGATCTCCCCAAACCCATGGAACCCTGATCTGGGTCCC---AGCAGTGAGAATATGGGAGCCATTA----TCTTCTGACGTTTC--------------CCCG-----------------------------------------------------------------------------------------------------------------------TTCCACTTGTCCGCCTGGACCTCAGG
i pteAle1.KB030580             I 8 C 0
s loxAfr3.scaffold_20           27619906 119 -  46401353 TTAATAATACGAATCTCCCCA-ACAAATATAACCCTGATTTGGGCAGC---AAAAATAAGAACACAAAAGTCATCTACATCCTCCTGGGGTTTC--------------CCTA-----------------------------------------------------------------------------------------------------------------------CTCTGCTC-TTTATTTGGTACTTAAG
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9967333 118 +  24341844 TTAATAATATGAATCTCCCCA-ACAAATAT-ATCCTGATTTGGGTTCC---AAAAATAAGAACATAAAAGTCATCCACATCCTCCTGGGGTTCC--------------CCTA-----------------------------------------------------------------------------------------------------------------------TGCCGTTC-TTTATTTGGTACTTAAG
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1033753  92 -   2788317 TTAAT-ATATGCGTGGCCCTA-AC------------------------------AGTAAGAACATCAAAGTTATCCACTTTCTCCTGGGGTTTC--------------CCTA-----------------------------------------------------------------------------------------------------------------------CTCCACTCTTTTGTTCAAAACCTAGG
i dasNov3.JH567436             C 0 C 0
e xipMac1.JH556722                320730 4277 -   2306555 I
e gasAcu1.chrXV                  6160607 4779 +  16198764 I
e ornAna1.Contig30778               2960 1666 +      7217 I
e tetNig2.chr10                  6376320 2971 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382   0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820   0 -   5414369 I
e araMac1.AOUJ01470298               637   0 -       895 I
e takFla1.KE120649                 19761 552 -    165821 I
e fr3.HE591725                    289183 523 -    411779 I
e ficAlb2.chr2                 148476508   0 + 157563209 I
e anoCar2.chr1                 148577473   4 + 263920458 I
e pseHum1.KB221189              55280499   0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214   0 -  25666195 I
e allMis1.JH739256                321407   0 -    882412 I
e falPer1.KB390952               2753956   0 -  18327016 I
e falChe1.KB397350               1707310   0 -   3649919 I
e macEug2.GL109592                104179 1353 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e sarHar1.chr1_GL834688_random    523392 1273 +   3395230 I
e melGal1.chr3                  91313763   0 + 100405168 I
e anaPla1.KB742696               1254472   0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1984803 4081 +   4979691 I
e chrPic2.chrUn_KK088237v1       5683959 314 -  22294289 I
e pelSin1.JH211373               2650239   0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530531674 1355 + 748055161 I
e taeGut2.chr2                 147424537   0 + 156412533 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21188098 1840 -  23169006 M
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=740672.000000
s hg38.chr8_KI270814v1_alt         86112 106 +    141812 ACTTCATATGCTCTGGTAAAGCCTGGCTTAAAT----AACTACTGAGCCACTAG-AAATTCTATCAAA--TAGTCCTCACCCA--TTTATGCTCCC---------------TTC-AAAGGGGT--------TCTTTGGG
s ponAbe2.chr8                  59055639 106 + 153482349 ACTTCATATGCTCTGGTAAAGCCTGGCTTGAAT----AACTACTGAGCCACTAG-AAATTCTATCGAA--TAGTCCTCACCCA--TTTATGCTCCC---------------TTC-AAAGGGGT--------TCTTTGGG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48134237 106 + 100215132 ACTTCATATGCTCTGGTAAAGCCTGGCTTAAAT----AACTACTGAGCCACTAG-AAATTCTATCAAA--TAGTCCTCACCTA--TTTATGCTCCC---------------TTC-AAAGGGGT--------TCTTTGGG
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99341510 106 + 108792865 ACTTCATACTCTCTGGTAAAGCCTGCCCCAAAA----AACTACTGAGCCACTGG-AAATTCTATCGAA--TGGTCCCTACCTA--CTTACACTCCC---------------TTC-AAAAGGGT--------TCTCCAGG
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24007637 106 +  27210278 ACTTCATACACTCTGGTAAAGCCTGCATCAAAA----AACTACTGAGCCACTGG-AAATTCTATCGAA--TGGTCCCTACCTA--TTTATACTCTC---------------TTC-AAAAGGGT--------TCTTCAGG
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19211989 106 -  22931326 ACCTCAGGTTCTCTGATAAAGCCTGGCTCAAAA----ACGTACTGAGACACTAG-AAAGTCTATCAAA--TGGTTCCCACCTA--TCGATGCTCCC---------------TTT-AACAGGCT--------TCTTTTGG
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2806387 106 -   6207710 ACCTCAGGTTCTCTGATAAAGCCTGGCTCAAAA----ATGTACTGAGACACTAG-AAAGTCTATCAAA--TGGTTCCCACCTA--TCGATGCTCCC---------------TTT-AACAGGCT--------TCTTTTGG
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10841992 108 +  17242564 ACCTCATATTCTCTGATAAAGCCTGACTCAAAA----ATATACTGAGCCACTAG-AAATTATATCAAATTTGGTTCCCACGTA--TTTATGCTCCC---------------TTT-AACAGGGG--------TCTTTTAG
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84036218  98 +  91571448 ACCTCATAC------ATAAAGCCTGGCTCAAAA----ATATACTGAACCATTAG-AAATTCTATCAAA--CGGTT-CCACCTA--TTTACGCTCCC---------------TTT--ACAAGGT--------TCTTTTGG
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6809730 100 -  14545593 ACCTCATAC------ATAAAGCCTGGCTCAAAG----ATGTACTGAGCCACTAG-AAATTCTATCAAA--TGTTTCCCATCTA--CTTATGCTCCC---------------TTT-AACAGGGT--------TCTTTTGG
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134106983 105 + 140925898 ACCTTGGAAGC--TGATAAAGCCAGTCTCAAAA----GCACACTGAGCCACTAG-AAATGCTACCAAA--TGGCTCCCACCTA--CTTATGCTCCC---------------TTTCCCCAGGGT--------TCCTTTGT
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57839803 106 -  64289059 ACCTCATATGCTTTCATAAAAGCTGGCTCAAAA----GTATACTGAGCCACTGA-AAATTTTATCAAA--TGGTTCCCATCTA--TTTGTGTTTCC---------------TTT-AACAGGGT--------TCTTTTGT
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13612098 108 -  19722643 ACCTCGTACGCTCTGATAAAGCCTGGCTCAAAAGC--GCATACTGAGCCACTGG-AAATTCTATCAAG--TGGTTCCTACATA--TGTGTGTGCCC---------------TTT-AACAGGGT--------TCTTTTGT
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3035039 106 +   4816872 ACCTCGTACGCTCTAATAAAGCCTGGCTCAAAA----GCATACTGAGCCACTGGAAAATTCTATCCAG--TGGTTCCC-CCCA--TTCACGTTCCC---------------TTT-AACAGGGT--------TCTTTTCT
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19412986  55 -  23789964 GCTTCATAC--TCTGATGAAGCTTGGCTCAAAA------GTACTGAGCCA---A-GACGGCTATGGG------------------------------------------------------------------------
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27620025 106 -  46401353 GCCTCATACCCTCTGATAACGTCTGGCTCAAAA----AATTACTAATCCACTAG-AAATTCTACCAAA--TGGCTCCCAACTA--TTTATGTTCCC---------------CTC-CATGGGGT--------TCTTTTGG
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9967451 106 +  24341844 GTCTCATACTCTCTGATAAAGTCTGGCTCAAAA----AATTACTAAGCCACTAG-TAATTCAATAAAA--TGGTTCCCACCTA--TTTATGCTCCC---------------TTC-AACAGGGT--------TCTTTTGG
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1033845 106 -   2788317 ACTTCATATTCTCTTGTAAACCTTGGCTCAAAA----AATTACTAAGCCACTGA-AAATTCTATCAGA--GGATTCCTACCTG--TGTATGCTCCC---------------TTT-AACAGGGT--------TCTTTTAG
i dasNov3.JH567436             C 0 C 0
s xenTro7.KB021657               7606279 136 - 124127367 ATCCCATTTACACTGTTACTAACTAGCTTAGTTGTTGAGGAACTTAGGCACTATTAAAGTGAGTGCAT--CAGTCCCAACCCCATTTTACACTGCCAAGCCAAGCTGGGGTCTC-AGCTGGGCCAATCAGATCTATGGG
i xenTro7.KB021657             N 0 C 0
e xipMac1.JH556722                320730 4277 -   2306555 I
e gasAcu1.chrXV                  6160607 4779 +  16198764 I
e ornAna1.Contig30778               2960 1666 +      7217 I
e tetNig2.chr10                  6376320 2971 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382   0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820   0 -   5414369 I
e araMac1.AOUJ01470298               637   0 -       895 I
e takFla1.KE120649                 19761 552 -    165821 I
e fr3.HE591725                    289183 523 -    411779 I
e ficAlb2.chr2                 148476508   0 + 157563209 I
e anoCar2.chr1                 148577473   4 + 263920458 I
e pseHum1.KB221189              55280499   0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214   0 -  25666195 I
e allMis1.JH739256                321407   0 -    882412 I
e falPer1.KB390952               2753956   0 -  18327016 I
e falChe1.KB397350               1707310   0 -   3649919 I
e macEug2.GL109592                104179 1353 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e sarHar1.chr1_GL834688_random    523392 1273 +   3395230 I
e melGal1.chr3                  91313763   0 + 100405168 I
e anaPla1.KB742696               1254472   0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1984803 4081 +   4979691 I
e chrPic2.chrUn_KK088237v1       5683959 314 -  22294289 I
e pelSin1.JH211373               2650239   0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530531674 1355 + 748055161 I
e taeGut2.chr2                 147424537   0 + 156412533 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21188098 1840 -  23169006 M
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=39551.000000
s hg38.chr8_KI270814v1_alt         86218 25 +    141812 GAGAGAGAAATCTT-TTTGTTGT------TGC
s ponAbe2.chr8                  59055745 25 + 153482349 GAGAGAGAAATCTT-TTTGTTGT------TGC
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48134343 25 + 100215132 GAGAGAGAAACCTT-TTTGTTGT------TGC
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99341616 31 + 108792865 GAGACAGAAATCTT-TTTGTTGTTGTTGCTGT
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24007743 31 +  27210278 GAGATAGAAATCTT-TTTGTTGTTGTTGCTGT
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19212095 24 -  22931326 GAGAGAAAACACTT-CTT-TTGT------GGG
i vicPac2.KB632437             C 0 I 1
s camFer1.KB017763               2806493 24 -   6207710 GAGAGAAAACACTT-CTT-TTGT------GGG
i camFer1.KB017763             C 0 I 8
s orcOrc1.KB316907              10842100 24 +  17242564 AAGAGAAAACCCCT-TCG-TTGT------GGG
i orcOrc1.KB316907             C 0 I 7
s equCab2.chr15                 84036316 24 +  91571448 AAGACAGAATCCTT-TTT-GTGG------AAG
i equCab2.chr15                C 0 I 9
s cerSim1.JH767782               6809830 24 -  14545593 AAGAGAGAACCCTT-TTT-TTGG------GAG
i cerSim1.JH767782             C 0 I 23
s felCat8.chrA3                134107088 24 + 140925898 AAGAAAGGACCTCC-TTT-TGGG------GGG
i felCat8.chrA3                C 0 I 10
s canFam3.chr17                 57839909 20 -  64289059 ----AAGAACCTCC-TTT-TTTA------GGG
i canFam3.chr17                C 0 I 14
s musFur1.GL896914              13612206 23 -  19722643 AAG-AAGAATCTCA-TTT-TGGG------GGG
i musFur1.GL896914             C 0 I 10
s odoRosDiv1.KB229025            3035145 20 +   4816872 AAGAAAGAACCTCC-TTT-----------GGG
i odoRosDiv1.KB229025          C 0 I 10
s loxAfr3.scaffold_20           27620131 25 -  46401353 AAGACAGAAACCATGTTT-TTCT------TCT
i loxAfr3.scaffold_20          C 0 I 8
s triMan1.JH594629               9967557 25 +  24341844 AAGACAGAAACCATTTTC-TTCT------TAT
i triMan1.JH594629             C 0 I 4
s dasNov3.JH567436               1033951 24 -   2788317 ACGAGAGAAACCAT-TTT-TTCC------TCT
i dasNov3.JH567436             C 0 I 6
s xenTro7.KB021657               7606415 25 - 124127367 AGGAAGGAAGCAGA-TTTATTCT------TGC
i xenTro7.KB021657             C 0 C 0
e xipMac1.JH556722                320730 4277 -   2306555 I
e gasAcu1.chrXV                  6160607 4779 +  16198764 I
e ornAna1.Contig30778               2960 1666 +      7217 I
e tetNig2.chr10                  6376320 2971 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120649                 19761 552 -    165821 I
e fr3.HE591725                    289183 523 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280499  0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH739256                321407  0 -    882412 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                104179 1353 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e sarHar1.chr1_GL834688_random    523392 1273 +   3395230 I
e melGal1.chr3                  91313763  0 + 100405168 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1984803 4081 +   4979691 I
e chrPic2.chrUn_KK088237v1       5683959 314 -  22294289 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530531674 1355 + 748055161 I
e taeGut2.chr2                 147424537  0 + 156412533 I
e pteAle1.KB030580              19413041  0 -  23789964 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21188098 1840 -  23169006 M
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-147903.000000
s hg38.chr8_KI270814v1_alt         86243 140 +    141812 TTTCTA----TGTTT-TGGC--------------------------------------------------------------TTTT--------------CAATAACCTTACG-----------TAAGGCC-CAAGTGCCACAGC-CTGGCATACAAGGTCCTTCATGAA-----CT-------GGCTC--------------------------------------------------------------------------CTCCTG-C---------ACC----------------------C-----------------------TGGCA----------------------GCCTGGCATG-------------------------------------CATTG---------------------------------CTGATTACTGCTC-CCATGTGCGTGCC
s ponAbe2.chr8                  59055770 140 + 153482349 TTTCTA----TGTTT-TGGC--------------------------------------------------------------TTTT--------------CAATAACCTTACG-----------TAAGGCC-CAAGTGCCACAGC-CTGGCATACAAGGTCCTGAATGAA-----CT-------GGCCC--------------------------------------------------------------------------CTCCTG-C---------ACC----------------------C-----------------------TGGCA----------------------GCCTGGCATG-------------------------------------CATTG---------------------------------CTGGTTACTGCTC-CCATGTGCGTGCC
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48134368 202 + 100215132 Tttcta----tgttt-tggctatgttgttctatgttgtctatgttgttgttgctttctgtgttttggctatgttgttctatgttTT--------------CAATAACCTTACA-----------Taaggcc-caagtgccacagc-ctggcatacaaggtcctgcatgaa-----ct-------ggccc--------------------------------------------------------------------------cccCTG-C---------ACC----------------------C-----------------------TGGCA----------------------GCCTGGCATG-------------------------------------CATTG---------------------------------CTGATTACTGCTC-CCATGTGCTTGCC
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99341647 139 + 108792865 TTACTA----CTTGC-TGGC--------------------------------------------------------------TTTT--------------CAATGGCCTCAGG-----------TAGGGCC-CAAGTGCCACAAT-CTGGCATACAAGTCCCTGCACGAA-----CT-------GGCTC--------------------------------------------------------------------------CTCCTG-T---------GCC----------------------C-----------------------TGGCA----------------------GCCTGGCATG-------------------------------------TAGCA---------------------------------CTGAGTCCTACTC-CC-TGTGCGTGCC
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24007774 140 +  27210278 TTACTA----CTTGT-tggt--------------------------------------------------------------tttt--------------caatggccttaggt----------taaggcc-caagtgccacaat-ctggcatacaagtccctgcacgaa-----ct-------ggttc--------------------------------------------------------------------------ctcCCG-T---------GCC----------------------C-----------------------TGGCA----------------------GCCTGGCATG-------------------------------------TAGCG---------------------------------CTGAGCCCTGCTC-CC-TGTGCGTGCC
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21189945 126 -  23169006 TTTTTT----TTTTT-TGGC--------------------------------------------------------------TCTT--------------CAATGGCCTGAGG------------------------GCCATAGC-CTGGCATACAAGGTCCTTGGTGAA-----CT-------GGCT---------------------------------------------------------------------------CTCAGG-C---------ACC----------------------C------------------------AGCG----------------------TCCTGATAGG-------------------------------------CCGCT---------------------------------TAGAttcctgcct-ccacacacatgcc
i otoGar3.GL873541             M 1840 C 0
s vicPac2.KB632437              19212120 191 -  22931326 TTTTT------TTTT-GTAC--------------------------------------------------------------TCTT--------------CACTGGCCTCACGA----------CAAGGCC-TAAGCCCCACAGC-CTGGCATCTGAGGTC-TCCACGAACAGGCGG-------GGCCC--GCCCA-CCCGTAAGCCT----------------------------------------------CATCTC---TTCCTG-C---------ACCTCCTC-----------------C-----G------------A-CCATGGCC---TTGAGCTAC--GCTG-ACAGCCGCCTGCA-------------------------------------CAGGG---------------------------------CTGCGTCACGCTT-CTGCATACGTGCA
i vicPac2.KB632437             I 1 I 483
s camFer1.KB017763               2806525 192 -   6207710 TTTTT------TTTT-TGAC--------------------------------------------------------------TCTT--------------CACTGGCCTCATGA----------CAAGGCC-TAAGCCCCACAGC-CTGGCATCTGAGGTC-TCCACGAACAGGCGG-------GGCCCT-GCCCA-CCCGTAAGCCT----------------------------------------------CATCTC---TTCCCG-C---------ACCTCCTC-----------------C-----G------------A-CCATGGCC---TTGAGCTAC--ACTG-ACAGCCGCCTGCA-------------------------------------CAGGG---------------------------------CTGCGTCACGCTT-CTGCATACGTGCA
i camFer1.KB017763             I 8 C 0
s orcOrc1.KB316907              10842131 281 +  17242564 TTCTT------TTTT-TGAC--------------------------------------------------------------TCTT--------------CTTTGGCCTC-TGA----------CTAGGCC-TAAGCTCCACAGC-CTGGCACCTAAAGCC-TCCAGGAA-----GG-------CGTCT--GCCCACCCCGTAAGCCTCACGTCCCACTATGCAGCGCCGCCGACCCAGGGCCCCTTGCAGGGCCGCGTC---ATACTG-CTGCAGACTGGCATCCCC-----------------TTGCAGG------------G-CCGTGTCA---TGCTGCTGCAGACTG-GCATCCCCTTGCAGGGCCGCGTCATGCTGCTGCAGACTGGCATCCCCTTGCAGGG---------------------------------CCGCGTCATGCTG-CTGCAGACG----
i orcOrc1.KB316907             I 7 C 0
s equCab2.chr15                 84036349 193 +  91571448 TTTTTA----TTTTT-TGGC--------------------------------------------------------------TCTT--------------CATTGGCCTTATGC----------CAAGGCC-CAGCCCCT-CAGC-CTGGCCTCGAAGGCGCTCCACAAA-----CT-------GGCCCT-T-CCGCCTCGTAAGCCT----------------------------------------------CATCTCCCACACCTG-C---------ACCTCAGC-----------------C-----A------------ACCCATGGCT---TCAAGCTAT--ACCA-AAAGCTTCACGAG-------------------------------------CAGTG---------------------------------CTGTGTCATACTT-CTATAAATCTGCA
i equCab2.chr15                I 9 C 0
s cerSim1.JH767782               6809877 192 -  14545593 TTTTTA----TTTTT-TGGC--------------------------------------------------------------TCTT--------------CATTGGTGTTATAA----------CAAGCCCTCAGCCCTC-CAGC-Ctggcatctaaggccctccatgaa-----ct-------ggccct-t-ccacctcataagcct----------------------------------------------catctcccacacctg-t---------acctctgc-----------------c-----t------------actca--gcc---tcaagctat--acca-aaagcctcatgag-------------------------------------tagtg---------------------------------atgtgtcatgctt-ctatatatttgca
i cerSim1.JH767782             I 23 C 0
s felCat8.chrA3                134107122 186 + 140925898 TTTTTC----TCTTT-TGAC--------------------------------------------------------------TATT--------------CACTGTCCTCCTGA----------CAAGGCC-CAGGCTCC-TCGC-CTGGCATCCGAGGCCTTCCAGGAA-----CT-------AGTCCT-TCCCATGGGGGAAGCCT----------------------------------------------CGTCTCCTGCTCCTG-C---------ACCTCCCCGGACAAAAGCCACATCAA-----A------------A-------------------------------GCCTCAGGAG-------------------------------------CAGGG---------------------------------CCCTGCCGTGCTC-CCACGCCCGTACA
i felCat8.chrA3                I 10 C 0
s canFam3.chr17                 57839943 178 -  64289059 TTTT-------TCTT-TGGC--------------------------------------------------------------TCTT--------------CACTGGCCTTATGA----------CAAGGCC-AAAGCTCA-TAGC-CCAGCATTGGAGGCCTTCCACAAA-----CT-------AGCCCT-TCCCACCCTGGAAGCCT----------------------------------------------TATCTCCTACTCCTG-T---------ACCTCCCT-----------------G-----G------------ACTCAGGGCTCAA-------------------GCCTCAGGAG-------------------------------------CAGTA---------------------------------CCCTGTCACGCTC-CCACCTACCTGGA
i canFam3.chr17                I 14 C 0
s musFur1.GL896914              13612239 187 -  19722643 TTTTTA----TTTTT-TGGC--------------------------------------------------------------TCTT--------------CACTGGCCTTACGA----------CAAGGCT-GAAGCTCG-CGGC-CCGGCATCTGAGGCCTTCCAGGAA-----CT-------AGTCTT-CCCCAACCCAGA---CT----------------------------------------------CATCTCCCACTCCTG-C---------CCC----------------------A-----G------------ACTCAGGGCT---TCAAGCCAG--ACTA-AAAGCCTCAGAAG-------------------------------------CAGCG---------------------------------CCCCATCACGCTTCCCCCCCACCTGTA
i musFur1.GL896914             I 10 C 0
s odoRosDiv1.KB229025            3035175 193 +   4816872 TTTGTA-----TTTT-TGGC--------------------------------------------------------------TTTT--------------CACTGGCCTTATGA----------CAAGGCC-GAAGCTCC-TAGC-CCGGCATCTAAGGCCTTCCATGAA-----CT-------AATCTT-TCCCACCCTGGAAGCCT----------------------------------------------CATCTCCCACTCCTG-C---------ACC-------------------------------------------------------------------------TCCCCGGACT-------------------------------------CAGGGCATCAAACCATACAAAAGGCCTCAAGAGCAGCACCCTGTCACACTT-CTCTCTACCTGCA
i odoRosDiv1.KB229025          I 10 C 0
s loxAfr3.scaffold_20           27620164 200 -  46401353 TTTTTA----CTATTATTATTTGGGGGCCAGGGAGCCC--------------------------------------------TTTT--------------CACTGATCTTACG-----------ACAAGTC-TAAGCTTCAGAGC-CTGGCATATAACGTTCT-------------------------CCATCCCacctcctaagcct----------------------------------------------catctc---ctgctatt---------ggcacttc-----------------t-----g------------attcactgct---ttaagctac--tcta-aaagcttgataca------------------------------------tcagtg---------------------------------ttgcttcatgctt-ccatatatttgca
i loxAfr3.scaffold_20          I 8 C 0
s triMan1.JH594629               9967586 215 +  24341844 TATTCA----TTATT-TTTTTGGGGGGTGGGGTGGGGC--------------------------------------------TCTT--------------CACTGACCTTATG-----------ACaagtc-taagcttcacagc-ctggcatataaggttctccatgaa-----ct-------ggccccatcccacatcctaagcct----------------------------------------------catc------------t---------cccactac-----------------t-----ggcacctctcctaactcactcct---tgaagctac--gcta-aaagcttgataca------------------------------------tcagca---------------------------------ctgattcacgctt-ccatatatttgca
i triMan1.JH594629             I 4 C 0
s dasNov3.JH567436               1033981 197 -   2788317 TTTTTA----TTGTC-TAGT--------------------------------------------------------------TCTT--------------CATTAGCTTTATGg---------taaaagtc-taaatgctataac-ctggcatacaaggtcctcagtgga-----ct-------ggccccttcccaccccttaagcct----------------------------------------------catt------------t---------cccagtac-----------------c-----agcacctcttctgactcatcgct---ttaggatac--acgacaaagccttataca------------------------------------cac------------------------------------ttgtttcttgctt-gcagatatttgca
i dasNov3.JH567436             I 6 C 0
s xenTro7.KB021657               7606440 200 - 124127367 TTTTTATGTGTGTTT-TTCC--------------------------------------------------------------CCTTAGCAGGGCAAGCGACAACTACCTTAAGGAGAAGCTGTGGGGAGCC-TCAATACTGCAGCGCTGG-----GAGCCTGTCCAGTTA-----CTTTATTACAACTGTAACAAACAGCACATGTTG----------------------------------------------CTTTACTGACTCCTG-C---------ACC----------------------C------------------CCCCAGAACC----------------------TACAAGTGAG-------------------------------------TACTG---------------------------------CCCCTCCGGGGGT-CTGTATCC-----
i xenTro7.KB021657             C 0 C 0
e xipMac1.JH556722                320730 4277 -   2306555 I
e gasAcu1.chrXV                  6160607 4779 +  16198764 I
e ornAna1.Contig30778               2960 1666 +      7217 I
e tetNig2.chr10                  6376320 2971 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382   0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820   0 -   5414369 I
e araMac1.AOUJ01470298               637   0 -       895 I
e takFla1.KE120649                 19761 552 -    165821 I
e fr3.HE591725                    289183 523 -    411779 I
e ficAlb2.chr2                 148476508   0 + 157563209 I
e anoCar2.chr1                 148577473   4 + 263920458 I
e pseHum1.KB221189              55280499   0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214   0 -  25666195 I
e allMis1.JH739256                321407   0 -    882412 I
e falPer1.KB390952               2753956   0 -  18327016 I
e falChe1.KB397350               1707310   0 -   3649919 I
e macEug2.GL109592                104179 1353 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e sarHar1.chr1_GL834688_random    523392 1273 +   3395230 I
e melGal1.chr3                  91313763   0 + 100405168 I
e anaPla1.KB742696               1254472   0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1984803 4081 +   4979691 I
e chrPic2.chrUn_KK088237v1       5683959 314 -  22294289 I
e pelSin1.JH211373               2650239   0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530531674 1355 + 748055161 I
e taeGut2.chr2                 147424537   0 + 156412533 I
e pteAle1.KB030580              19413041   0 -  23789964 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=68505.000000
s hg38.chr8_KI270814v1_alt         86383 59 +    141812 T--GCATCTTTTCTCTGCCTGGGGTG-CCTTCCCTC---CCCTGTGTTGGGGT-AA---C-----TCCACTCA----------T
s ponAbe2.chr8                  59055910 59 + 153482349 T--GCATCTTTTCTCTGCCTGGGGTG-CCTTCCCTC---CCCTGTATTGGGCT-AA---C-----TCCACTGC----------T
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48134570 59 + 100215132 T--GCATCTTTTCTCTGCCTGGGGTG-CCTTCCCTC---CCCTGTGTTGGGCT-AA---C-----TCCACTGA----------T
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99341786 59 + 108792865 C--TTGCCTTGCCTCTGCCTGGGGTG-CCTTCCCGC---CCGTGAGTTGGGCT-AA---C-----TCCACATA----------C
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24007914 59 +  27210278 C--TCATCTTGCCTCTGCCTGGGGTG-CCTTCCCAC---CCGTGAGTTGGGCT-AA---C-----TCCACTGA----------C
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21190071 59 -  23169006 t--gtgtcttttctctgcctgggatgttccttcctc---ccagtcattgggct-aa---c-----ttggctg-----------c
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19212794 62 -  22931326 TGCATAACCTCCCTCTGTCTCGTGTGCCCTTCCCTC---CTGCTTTTCTGGCT-AA---C-----TCATCTGG----------C
i vicPac2.KB632437             I 483 C 0
s camFer1.KB017763               2806717 61 -   6207710 ----TAACCTCCCTCTATCTCGTGTGCCCTTCCCTCCTGCTGCTTTTCTGGCT-AA---C-----TCATCTGG----------C
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10842412 59 +  17242564 GGCATTTTC-CCCTCTGCTTTGTGTGCCCTTCCCTC---CCGCTTTCCTGGTT------C-----TCGCCGGA----------C
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84036542 43 +  91571448 ---TG-TTTTCCCTCTG---------------CCTT---CCATTTTTCTGACT-AA---C-----TTGGCTGA----------C
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6810069 44 -  14545593 ---tgtttttccctctg---------------cctC---CCATTTTTCTGACT-AA---C-----TCGGCTGA----------C
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134107308 41 + 140925898 ---CACGTGTCCCT--------------CTGCCCTC---CCATCCTGCTGAC-------------TCGGCTGG----------C
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57840121 59 -  64289059 ---TGTGTATCCCTTTACCTCGTGTGCCCTGCCCTC---CCATTTCGCTGGCT-AA---C-----TGGGCTAA----------C
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13612426 59 -  19722643 ---GGTGTGTCCCTCTGCTTTATGCACCCTGCCCTC---CTACCCCACTGGCT-AA---C-----TCGACAGA----------C
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3035368 64 +   4816872 ---TGTGCGTCCCTCTGCCTCATGTGCCCTGCCCTC---CCGTTCTGCTGGCT-AA---ACTGAGTTGGCTGA----------C
i odoRosDiv1.KB229025          C 0 C 0
s loxAfr3.scaffold_20           27620364 62 -  46401353 -tatgttttcccctctactgagaatgccctttcctc---ttgttttcttggttgaa---t-----tcagctga----------c
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9967801 62 +  24341844 -tatgttttccccactactgagaatgccctttcctc---gtgttttttctggtgaa---t-----ttagctga----------c
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1034178 71 -   2788317 -tatgcttttccctctgcctagacttcctttccctc---ctgtgtctctggct-aa---t-----tcAGTTGATTTGATCTCCC
i dasNov3.JH567436             C 0 C 0
s xenTro7.KB021657               7606640 59 - 124127367 --TATTGCTCTCCACTCATTCACACC-CCTTCTCTG---CACCACCATGGAGT-AATGCC-----TTTCCT-------------
i xenTro7.KB021657             C 0 N 0
e xipMac1.JH556722                320730 4277 -   2306555 I
e gasAcu1.chrXV                  6160607 4779 +  16198764 I
e ornAna1.Contig30778               2960 1666 +      7217 I
e tetNig2.chr10                  6376320 2971 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120649                 19761 552 -    165821 I
e fr3.HE591725                    289183 523 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280499  0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH739256                321407  0 -    882412 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                104179 1353 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e sarHar1.chr1_GL834688_random    523392 1273 +   3395230 I
e melGal1.chr3                  91313763  0 + 100405168 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1984803 4081 +   4979691 I
e chrPic2.chrUn_KK088237v1       5683959 314 -  22294289 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530531674 1355 + 748055161 I
e taeGut2.chr2                 147424537  0 + 156412533 I
e pteAle1.KB030580              19413041  0 -  23789964 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=55723.000000
s hg38.chr8_KI270814v1_alt         86442 7 +    141812 CTGTT-CC
s ponAbe2.chr8                  59055969 7 + 153482349 CTGTT-CT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48134629 7 + 100215132 CTGTT-CC
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99341845 7 + 108792865 CTGTT-CT
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24007973 7 +  27210278 CTGTT-CT
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21190130 7 -  23169006 ctgtt-ct
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19212856 7 -  22931326 ATGTT-CT
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2806778 7 -   6207710 ATGTT-CT
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10842471 7 +  17242564 GTGTT-CT
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84036585 7 +  91571448 ATGTT-CT
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6810113 7 -  14545593 ATGTT-CT
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134107349 8 + 140925898 GTGTTATT
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57840180 7 -  64289059 ATGTG-TT
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13612485 7 -  19722643 GTGTT-CT
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3035432 7 +   4816872 GTGTT-CT
i odoRosDiv1.KB229025          C 0 C 0
s loxAfr3.scaffold_20           27620426 7 -  46401353 atgtc-tt
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9967863 7 +  24341844 atgtc-ct
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1034249 7 -   2788317 ATGTT-TT
i dasNov3.JH567436             C 0 C 0
e xipMac1.JH556722                320730 4277 -   2306555 I
e gasAcu1.chrXV                  6160607 4779 +  16198764 I
e ornAna1.Contig30778               2960 1666 +      7217 I
e tetNig2.chr10                  6376320 2971 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120649                 19761 552 -    165821 I
e fr3.HE591725                    289183 523 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221189              55280499 0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH739256                321407 0 -    882412 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                104179 1353 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e sarHar1.chr1_GL834688_random    523392 1273 +   3395230 I
e melGal1.chr3                  91313763 0 + 100405168 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1984803 4081 +   4979691 I
e chrPic2.chrUn_KK088237v1       5683959 314 -  22294289 I
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530531674 1355 + 748055161 I
e taeGut2.chr2                 147424537 0 + 156412533 I
e pteAle1.KB030580              19413041 0 -  23789964 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=403305.000000
s hg38.chr8_KI270814v1_alt         86449 153 +    141812 CC--AGACCCC-----TGA---AGGCTTGACAGGAAAT--------GT--------GTCCTAACAGCTA----------------------------------TCCCCTGGCACACTCTGTGAAGGAGATCCTGAGAGG--CTTCTGTAGAGGTCCCCGAGATGGGTCAGACTGGGTTTCCAGTCATC-CA-GATGTGACT----------CTGGAATCAAGT------------------------------------------GCAG
s ponAbe2.chr8                  59055976 153 + 153482349 CC--AGATCCC-----TGA---AGGCTTGACAGGAAAT--------GT--------GTCCTAACAGCTC----------------------------------TCTCCTGGCACACTCTGTGAAGGAGATCCTGAGAGG--CTTCTGTAGAGGTCCCCGAGATGGGTCAGACTGGGTTTCCAGTCATC-CA-GGTGTGACT----------CTGGAATCAAGT------------------------------------------GCAG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48134636 152 + 100215132 CC--AGGCCCC-----TGA---AGGCTTGACAGGAAAT--------GT--------GTCCTAACAGCTC----------------------------------TCTCCTGGCACACTCTGTGAAGGAGATCCTGAGAGG---TTCTGTAGAGGTCCCCGAGATGGGTCAGACTGGGTTTCCAGTCATC-CA-GAGGTGACT----------CTGGAATCAAGT------------------------------------------GCAG
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99341852 151 + 108792865 CC--AAGCCCC-----TGA---AGGCTCAATGGGGAAT--------GT--------GTCTGAACAGCTC----------------------------------TCTCTGGGCACACTCTGT---GGATACCCTGAGAGG--CCTCTGTAGAGATCCCAGAGATGGGTTAGACTGGATTTCCAGTCATC-CCTGATGGGACC----------CAGGAATTGTGT------------------------------------------GCAG
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24007980 137 +  27210278 CC--AAGCCCC-----TGA---AGGCTTGATGGAGAAT--------GT--------GTCTGAACAGCTC----------------------------------TCTCTGGGCACACTCTGT---GGAGACCCTGAGAGG--CCTCTGTAGAGGTCCCAGAGATGGGTTAGAC--------------TC-CCTGATGGGACC----------CGGGAATTATGT------------------------------------------GCAA
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21190137 201 -  23169006 ct--gagcccc-----CAA---GGGGACAGTAGGTTATATCCCTTGGT--------GTCCAAACGGCTC----------------------------------TCTT---ACACACTTTGTGAAGGAGACACTAAGAGG--CCACTGCAGAGTTCCCCAACACCGGCCAGACCAGGCTTCCAGTTATG-CCAGATGTGACC----------CAAGAATCCAATCAAAGAACTCAAGTCTCCCAGGcggcacctgtggctcagtgggcag
i otoGar3.GL873541             C 0 I 180
s vicPac2.KB632437              19212863 191 -  22931326 CT--GGGCCCC-----AAG---GGG-ATGGTGAGTAACGTTCCCCGGT--------GGCCTAACGGCTCACCGGG----CCCCACCTTCCCCGCCCCAACAGCTCCCCCGGCACAGTCTGTGAAGGAGAGACTGAGGGGTCTCTCTGCAGAGCCCCCGGCATCC-GCCAGGATGGGCTTCCAGACGTG-CCAAATGCGA-C----------CAGGGATCACAT------------------------------------------GTCG
i vicPac2.KB632437             C 0 I 4
s camFer1.KB017763               2806785 191 -   6207710 CT--GGGCCCC-----AAG---GGG-ACGGTGAGTAACGTTCCCCGGTGGACTAACGGCTC--------ACCGGG----CCCCGCCTTCTCCGCCCCAACAGCTCCCCCGGCACAGTCTGTGAAGGAGAGACTGAGGGGTCTCTCTGCAGGGCCCCTGGTATCC-ACCAGGATGGGCTTCTAGATGTG-CCAGATGCGA-C----------CAGGGATCACGT------------------------------------------GTCG
i camFer1.KB017763             C 0 I 4
s orcOrc1.KB316907              10842478 164 +  17242564 CC--GGGCCCC-----CAG---GGG-ATGCTGAGCAGTGTTGCTCCGT--------GTCCTAACGGCTCCCCGGG----CCCAGAC-TCCTTGCCCCAACAGCTCTCCTGGCAC-TTCTG---------------------CCCCTGCAGAGGCCCCCGTAATC-----GGCTGGGCTTCCGGATGTG-CCAGAGGCCG-C----------CAGGGATCACGT------------------------------------------GTGG
i orcOrc1.KB316907             C 0 I 4
s equCab2.chr15                 84036592 189 +  91571448 TC--AGGTTCC-----AAG---GGG-ATGATGAGCAATGCTCCCCAGT--------GTTCTAACAGCTCCCCAGG----CCCACCCC-ACCCACCCCAGCAGCTCTCCTGGCACCCTCTGTGAAGGAGATACTGAGA-G--GTTCTGCAAAGGACCTTGAGATCAGCCAGCCTGGGCTTCCAAATGTGCCCAGATGTGA-C----------CAGGAATTATGG------------------------------------------GCAG
i equCab2.chr15                C 0 I 4
s cerSim1.JH767782               6810120 190 -  14545593 CT--GGGCCCC-----AAG---AAG-ATGATGAGTAATGTCTCTCGGT--------GTCCTAACGGCTCACAGGG----CCCACCCCTCCCCGCCCCAGCAGCTCTCCTGGCACACTCTGTGAAGGAGATACTGAGACG--CCTCTGCAGAGGACTTGGAGATGGGCCAGCCTGGGCTTCTGGATGTG-CCAGATGTGA-C----------CAGGAATCATGT------------------------------------------GCAA
i cerSim1.JH767782             C 0 I 4
s felCat8.chrA3                134107357 136 + 140925898 TT--AGGACCCAGGGTCGGTCCAGG-ACAACGAGGAATGTTCCCCGG---------GTCCTCCCGGCTCACCAGG----CCCAG-------------------------GGCTCCCGCT-------------------G--CCCCAACA----------------GCCCGCCTGCGCTTCCA-ATGTG-CCAGACGTGA-C----------TGGGAATCAAGT------------------------------------------GCAG
i felCat8.chrA3                C 0 I 4
s canFam3.chr17                 57840187 166 -  64289059 CT--AGGACCT-----AGGTCCAGG-ACGATGAGGAATGTTCCTCAGT--------CTCGTAATAGCTCGCCAGT----CCT---------------------------GGCAAGCTCTGGGAAGTAAATACTGAAAGG--TCTCTGCAGAGGTCGCTGAGATTGGCCAGCCTAGGCTTCCGGATGAG-CCAGACGTGC-C----------TGCGAATCACGT------------------------------------------GCAG
i canFam3.chr17                C 0 I 4
s musFur1.GL896914              13612492 178 -  19722643 CC--AGGACCC-----TGGCGCCGG-ACAATGAGGAATGTTCCTCAGT--------GTCCTAACAGCTCGCCGGT----CCTGGTGCT-----CTGCAA----------GACAGGCTCTGGGAGCGAAATACTGAGAGG--TCCCTGCAGAGGTCGCGGGGACTGGCCAGCCTCAGCTTCCGGATGAG-CCAGATGTGA-C----------TGGGAATCCCGT------------------------------------------GCAG
i musFur1.GL896914             C 0 I 4
s odoRosDiv1.KB229025            3035439 192 +   4816872 CT--AGGACGC-----CAGTCCGGG-ACGACAAGGAATGTTCCTCAGT--------GTCCTAACGGCTGGCCAGG----CCCAGTGCTCCCTGCCCCAACAGCCCTCCTGGCATGCTCTGGGAA-GAAATACTGAGAGG--TCTCTGCAGAGGTCATGGAGATTGGCCAGCCTGGGCTTCCAGATGAG-CCAAACGTGA-C----------TGGGAATCACGT------------------------------------------GCAG
i odoRosDiv1.KB229025          C 0 I 4
s pteAle1.KB030580              19413041 137 -  23789964 ----------------------------------TCAGACCCCTCACT--------GTCCTAGCGGCTC-----------------------------------TTCCTGGCGCACTGTGCGAGGGAGACAC-GAGAGG--TCTCTGCACAAGTCCCTGAGGTCGGCCAAGCTGCACTTCTGGATGTGCCCAGACGCGACC----------CGGGAATCACGT------------------------------------------GCGG
i pteAle1.KB030580             C 0 I 4
s loxAfr3.scaffold_20           27620433 174 -  46401353 ct--ggAGCAC-----------------------CACTGATCCTCAGT--------GTCTTAGCAGCTCCCTGGGCATACATACCAT----------------TCTCCTAGTACACTCTATAAAGGAGCTAC--AGAGG--CTTCTACAGAGATCCCCACGATTGGCCAACCTGAGCAGCCAGACATGCCCAGATATGATCCTGCCCTAGACAGTAATCATGT------------------------------------------GAAG
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9967870 169 +  24341844 cc--ggagccc-----------------------cactgatgctcagt--------gtcTTAGCAGCTCCCTGGG----CATAGCTT----------------TCTCCTAGTACACTCTATAAAGGAGCCGC--CGAGG--CCTCTGCAGAGATCCCCGAGACTGGCCGGGCTGGGCATCCAGACATGCCCAGATATGATCCTGCCCTAGACAGTAATCATGT-------------------------------------------CAG
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1034256 181 -   2788317 CCCAGATGCCC-----AAA---GGC-CTGGTGGGCAATGTTCCTCGGT--------GTCCTA--ATTTCCCTGTG----CATACCTC----------------TCCCTTACCACACTCTGGAGAGGACATAC--GAAGG--CCTCTGCAGAGGCCCCTGAAATCGACCAGGCCAGGCCACCAGACATATCAAAA-ATGA-CCTGCCCTGGACACTAAT-ATGT------------------------------------------GAAG
i dasNov3.JH567436             C 0 C 0
e xipMac1.JH556722                320730 4277 -   2306555 I
e gasAcu1.chrXV                  6160607 4779 +  16198764 I
e ornAna1.Contig30778               2960 1666 +      7217 I
e tetNig2.chr10                  6376320 2971 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382   0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820   0 -   5414369 I
e araMac1.AOUJ01470298               637   0 -       895 I
e takFla1.KE120649                 19761 552 -    165821 I
e fr3.HE591725                    289183 523 -    411779 I
e ficAlb2.chr2                 148476508   0 + 157563209 I
e anoCar2.chr1                 148577473   4 + 263920458 I
e pseHum1.KB221189              55280499   0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214   0 -  25666195 I
e allMis1.JH739256                321407   0 -    882412 I
e falPer1.KB390952               2753956   0 -  18327016 I
e falChe1.KB397350               1707310   0 -   3649919 I
e macEug2.GL109592                104179 1353 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e sarHar1.chr1_GL834688_random    523392 1273 +   3395230 I
e melGal1.chr3                  91313763   0 + 100405168 I
e anaPla1.KB742696               1254472   0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1984803 4081 +   4979691 I
e chrPic2.chrUn_KK088237v1       5683959 314 -  22294289 I
e pelSin1.JH211373               2650239   0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530531674 1355 + 748055161 I
e taeGut2.chr2                 147424537   0 + 156412533 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=951806.000000
s hg38.chr8_KI270814v1_alt         86602 281 +    141812 ----AACCAAAGG------------------------------------------------------ACTAGAGTCTCCCAAGAACGTAGC-CACAATCATGTCCCTTTCATGGTGCACATCTGTCAGGGCCGACAATGTTTAGAAACAGCACACTGCTCAG-----------CAAATGCCCATCCAGCCCTGCCTGCTTCTCA----------CC-----------G-AAGCAGCTCCTGGCCTACATGTTTATAG----------------------------------------------------------------------------------TGGCG-AGG---CATG--TCCTAAACAGCCAACATCCTCTGAAGGAC-----------------------------------------------------------------------------------AGAAAAA------TGAAGTCAGCTCAT-GCCTTACAACTG-T-GATCTTTCCAG-CAGGAAAATAA----ATCCTTGCTAGGAT---CTTTT-
s ponAbe2.chr8                  59056129 281 + 153482349 ----AACCAAAGG------------------------------------------------------ACTAGAGTCTCCCAAGAACGTAGC-CACAATCATGTCCCTTTCATGGTGCACACCTGTCAGGGCCGACAATGTTTAGAAACAGCACACTGCTCAG-----------CAAATGCCCATCCAGCCCTGTCTGCTTCTCA----------CT-----------G-AAGCAGCTCCCGGCCTACATGTTTACAG----------------------------------------------------------------------------------TGGCG-AGG---CATG--TCCTAAACAGCCAACATCCTCTGAAAGAC-----------------------------------------------------------------------------------AGAAAAA------TGAAGTCAGCTCAT-GCCTTACAACTG-T-GATCTTTCCAG-CAGGAAAATAA----ATCCTTGCTAGGAT---CTTTT-
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48134788 286 + 100215132 ----AACCAAAGG------------------------------------------------------ACTAGAGTCTCCCAAGGACGTAGC-CACAATCATGTCCCTTTCATGGTGCACACCAGTCAGGGCTGATAATGTTTGGAAACAGCACACTGCTCAG-----------CAAATGCCCATCCAGCCCTGTCTGCTTCTCA----------CT-----------G-AAGCAGCTCCCGGCCTACATGTTTATAG----------------------------------------------------------------------------------TGGCG-AGG---CATG--TCCTAAACAGCCAACATCCTCTGAAGGAC-----------------------------------------------------------------------------------AGAAAAATGACTCTGAAGTCAGCT-AT-GCCTTACAACTG-T-GATCTTTCCAG-CAGGAAAATAA----ATCCTTGCTAGTAT---CTTTT-
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99342003 314 + 108792865 ----ATCCAAAGA------------------------------------------------------ATTTGAGTCTCCTGAGAAAGCA------------------------------ATCTGTCAGGGCCGGCAATGTGCACGAGCAGCGTGCTGCCCAG-----------CAAATGCCCCTCTAGCCCTATTCACTGCCCC----------CT-----------G-AAACAGCTCCCAGCCTGCGTGCTCATAAGCAAGTGCCCCTCTAGCTCT--------------------GTCCACTGCCCCTGAAACAGCTCCCAGCTTGCATGCTTACACTGGCT-AGG---CATA--TCTTAAACAGCCAACATCCTCTGAAGGAC-----------------------------------------------------------------------------------ACCGAAA------TGAAGTAGGCTCAT-GCCTGATGAGTG-C-GACCTTCCCAG-CAGGAAAATAC----ACCCTTGCTAGGAC---CCCTT-
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24008117 347 +  27210278 ----ATCCAAAGA------------------------------------------------------ATTTGAGTCTCCTGAGAAGGCAGC-CACAATCATGTCCCTTTCATGGGACACATCTGTCAGGGCCGGCAATGTGCACGAGCAGTGGGCTGCCCAG-----------CAAGTGCCCCTCTAGCCCTATCTGCTGCCCC----------CT-----------G-AAACAGCTCCCAGCCTTCGTGCTCATAA--------------------GCAAGGGCCCCTCTAGCCCTGTCCACTGCCCCTAAAACAGCTCCCAGCTTGCATGCTTACACTGGGT-AGG---CATA--TCTTAAACAGCCAACATCCTCTGAAGGAC-----------------------------------------------------------------------------------AGAGAAA------TGAAGTAGGCTCAT-GCCTGATGAGTG-C-GACCTTCCCAG-CAGGAAAATGCTAGAACCAGTGCTAGGAC---CCTTT-
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21190518 343 -  23169006 ----aaccgagggtgacaaagtgagactctgtctcttaaaacaaaacaaaacaaaCAAACAAAACCAACTCAAATCTCCCAAGAACA-AGC-CACAATCATCTCCCTTTCACAGTGCATACCTGTCAGGGCCAA-GATGTGCAGAACCAAAGCATCTCATAG-----------CCAGACACCCTCT--CCCTGACTGCTACTCACTCCGCCCTCCT-----------A-CAACCGTGCATAGCCCAAGCGTTTGTAA----------------------------------------G-----------------------------------------TGGCA-ATG---CACG--TGCTAAATAGCCAAC-TTCTTTGGAGGAC-----------------------------------------------------------------------------------AGAAAAA-----ATGAAATCAGCTCAT-GCTTTACGAACG-C-AATTTTTCCAGTCAGGACACTAC----ATCCTTGCTGGCTT---CCTTT-
i otoGar3.GL873541             I 180 C 0
s vicPac2.KB632437              19213058 372 -  22931326 ----AATCAAAGA------------------------------------------------------ACTCG-GTC-TCTAGGAACTGGGG-CACAGTCATCTCCCCGTCACCTCGCACGTCTGCTTGTGGAAGTGACGCACACAAGTGCCCCACTGCTCAGCACCCGGCACCCACACAG-GCTCGAGCCCGGACTGTCCCGCA----------CTCACACGCTCAGG-AAACAGCTCATGGCTCACGTGTCTGTGC----------------------------------------G-----------------------------------------A-GCA-GGG---CGAA--GCCTCAACAGCCAGAGCCCAGTGGAGGAC-GGGGCCTTACTAGTTCCACCGGGAGCTGCATCCTCGCGAGGAGCCGAGGAGCCTCCCCTAG------------TGGTCCGTCAGGGACA------TGCCGGAGGACAGGTGCGTTACTGGTG-CAGATTCCCCCAC-GGGGAACCTGC----ATCCTCGCAAGGAT---CCTCC-
i vicPac2.KB632437             I 4 C 0
s camFer1.KB017763               2806980 365 -   6207710 ----AATCGAAGA------------------------------------------------------ACTCG-GTC-CCTGAGAACTGGGG-CACAGTCATCTCCCCGTCACCTTGCACGTCTGCTTGTGGAAGTGACGCACACAAGTGCCCCAGTGCTCAGCACCCGGCACCCATACAG-GCTCGAGCCTGGACTGTCCTGCA----------CTCACACGCTCGGG-AAACAGCTCATGGCTCATGTGTCCGTGC----------------------------------------G-----------------------------------------A-GCA-GGG---CAAA--GCCTCAACGGCCAGCGCCCGGTGGAGGACAGGGGCCTTACTGGTT------------------CCACTGGGAGCTGC--ATCCTCGCAAGGAGCCTCCCCCAGTGGTCCATCAGGGACA------TGCCAGAGGACAGGTGCGTTACTGGTG-CAGATTCCCCCAC-CGGGAACCTGC----ATCCTCACAAGGAT---CCTCC-
i camFer1.KB017763             I 4 C 0
s orcOrc1.KB316907              10842646 300 +  17242564 ----CGTCAGAGC------------------------------------------------------ACTCG-GTCGCCTAAGAACTGGGG-CACGATTGCCTCTCTTTCCCATCACACACCTGTCTGGGCCAATGACGTGTGAGAGCAACTTTCTGCTCGGTGCCTGGTGCCCACACAGCACTCGA-CCCTGACTGTCCC-CA----------CGCACGTGCCCGGGAAAACAGTTCACGGCTCAAGTGTTTGTAC----------------------------------------G-----------------------------------------AGGCA-AGG---CGAG--GCCTCAACAACGAGCATCCTTTGCAGGAC-----------------------------------------------------------------------------------AGAAAAA------TAAAGGCGGCTCAG-GCCTTGCTGGTG-CCCATTCTCCCTT-CAGGAAACCA-------CCCTGCAAGGAT---CCTCT-
i orcOrc1.KB316907             I 4 C 0
s equCab2.chr15                 84036785 303 +  91571448 ----AATCAAAGA------------------------------------------------------ACTCA-GTCTCCTAAGAACTCAGG-CACAATCATCTCCCTTTCACAGCACACAGCTGTTCGTGCCAAGGACATGCAAAAGCAACTTACTGCTTAGCATCTGGTACCCAAAAACCACTCAAGCGCTGACTGTTTCTCA----------CTCATGTACTCGTG-AAACAATTCAGGGCTCCAGTGTTTATAC----------------------------------------A-----------------------------------------TGGCA-AAG---CACT--TTCTAAACAACCAACATCCTTCGGAAGAC-----------------------------------------------------------------------------------TGAAAAA------TAAAGTCAGCTCAA-GCTTTACTGGCG-CCA--TTTCCCAT-CAGGAAGCTAC----CTTCTTGCAAGGAT---CCTTTT
i equCab2.chr15                I 4 C 0
s cerSim1.JH767782               6810314 303 -  14545593 ----AATCATAGA------------------------------------------------------ACTCA-GTCTCCTAAGAACTCGGG-CACAATCATCTCCCTTTCACAGCATACAGCTGTTTGCGCCAATGACATGCAAAAGCAACTTACTGCTCAGCATCTGGTACCCAAACACCACTCAAGCCCTGACTGTTCCTCA----------CTCACATACTCGTG-AAACAATTCTCAGCTCAAGTATTTATAT----------------------------------------G-----------------------------------------TGGCA-AGG---CACT--TTCGAAACAACGAACATCCTTTGAAAGAC-----------------------------------------------------------------------------------TGAAAAA------TAAAGTAGGCTCAA-GCCTTACTGGTG-CAG--TTTCCCAT-CAGGAAGCTAC----ATCCTTACAAGGAT---CCTTTT
i cerSim1.JH767782             I 4 C 0
s felCat8.chrA3                134107497 270 + 140925898 ----AGTCAAAGA------------------------------------------------------ATCTC-ATCTCCTAAGAACTGGGG-CACAATCATCTGTTTTTCGTATGACACATCTGTTTGTGCCAGGGACA----------------CGCTCAGCGTCTGGTA--TAGATGCCACTCGAGCC--GAATGTTCCTCA----------CTCACACGCTCACG-GAACAGTTCA----------------------------------------------------------------------------------------------------CACCTGAGGTCTCTCT--TCCCGAACAAGGAACATCCTTTGGAGGAC-----------------------------------------------------------------------------------AGAAAGA------TCAAGTCGGCTCAA-GCCGTCCTGGGC-CAGATTTTCCTAC-AGGGAAACCAC----ATCCTGGCCAGGAC---CTTTCT
i felCat8.chrA3                I 4 C 0
s canFam3.chr17                 57840357 279 -  64289059 ----AATCAGAGA------------------------------------------------------ATGTG-AT---TTAAGAACTGGGG-CACAATCATCTGTCTTTCAGATCACACATCTGTTTGGGCCAATGACGTGCAAAAGCGGC-TACTGCTCAGCATCTGGTA--CAGACACCACTCGAGCC--GAC--TTCCTCA----------CTCACGTGTTCATG-AAACAAATCA----------------------------------------------------------------------------------------------------CAGCCTAGG---CGTTTATTCTGAACAATGAACGTCCTTTGGAGGAT-----------------------------------------------------------------------------------GGAAAAA------TAACGTTGGCTCAA-GCCTTACTGGTG-CGGATTTTCCTGC-CAGGAAGCTAC----ATCCTTGCAAGGAC---CCTTAC
i canFam3.chr17                I 4 C 0
s musFur1.GL896914              13612674 292 -  19722643 ----AACCGGAGA------------------------------------------------------ATCTG-AT---CTAAGAACCGGGG-CACAATCCCCTGCCCTTCGGATCACACATCTGCCTATGCTGGTGACGGGCCGGAGCGGA-TACTGCTTGGCGTCTGCTA--CAGACCCCACTCGCGCC--GCC--CTCTC------------CTTACCGGTGCACG-CAACGACTCAGCGTT--GGTGCTGACTC----------------------------------------G-----------------------------------------TGGCA-AGG---CGCT--CCCCGAGCAAGGA--CGCCTTTGGAGGAC-----------------------------------------------------------------------------------GGAAACA------TAAAGTGCGCTCGA-GCCTTACTGGTG-CAGACCTTCCTGC-TGGGAAACTAC----ATCCTTGCAAGGACACTCTTCTG
i musFur1.GL896914             I 4 C 0
s odoRosDiv1.KB229025            3035635 276 +   4816872 ----AATCAGAGA------------------------------------------------------GTTTG-AT---CTAAGAACTGGGG-CACAATCATCTGCCTTTCAGATCACACATCTGTTTGTGCCAACAACATGCAAAAGCAGC-TACTGCTCGGCATCTGGTA--CAGATACCGCTCAAGCC--GAC--TTCCTCA----------CTCACATGTTCATG-AAACAATTCA----------------------------------------------------------------------------------------------------CAGCA-AGG---CGCT--TCCTGAACAGTGAACATCCCTCAGAGGAC-----------------------------------------------------------------------------------AGAAAAA------GAAAGTCCGCTCGA-GCCTTACTGGTG-CAGATGCTCTTGC-CGGGAAACTAC----GTCCTAGCAAGGAC---CCTTTG
i odoRosDiv1.KB229025          I 4 C 0
s pteAle1.KB030580              19413182 274 -  23789964 ----AAGCACAGA------------------------------------------------------ACTCG-GCCTCCTAAGAGCGCGGG-C------------------------ACATCTGTCTGTGACAGTGCCATGCAAAAGTGACTTAGTGCTCAGCATCTGGCACCCAAATGCCCCCCGAGCCCTGACTGCTCCTCA----------CTCACACGCTCGTG-GAACA---CAGGGCTCAAGTGTTTACAC----------------------------------------G-----------------------------------------------TGG---CACC--TCCGACACAATGAACAGCCTCTGGGGGAC-----------------------------------------------------------------------------------AGAAAAA------TGGAGCCGGCTCGA-GCCTCCCTGGTGCCAGCTCTTCCCCG-CAGGAAACCGC----ATCCCGGTGAGGGT---GCTGCT
i pteAle1.KB030580             I 4 C 0
s loxAfr3.scaffold_20           27620607 294 -  46401353 GTCCAATAAAAGA------------------------------------------------------A--TGGGTCTCCTAAGAACTCAGA-CACAATCATCTCCCTTTCACAGCTCACATCTGTTTGTGCCAATGATATGCAAAACTACCTTATTGCTCAGCATACTGTACCC-------ACCCTGCCCCTGACTCTT----A----------CTCACGTACTTGTG-AAGCAGCTCATAACTTAAGTGTTTACAA----------------------------------------G-----------------------------------------CAGCA-AGG---CATT--TCCTA---AACAAATACCCTTTGGAGGAC-----------------------------------------------------------------------------------AGAAAAA------CGAAGTTGGTTCGT-GCTTTCCTAACG-CAGATTTTCCCGT-TAGGAAAATAC----TTCCTTGCAAGGAT---CCTTTT
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9968039 295 +  24341844 ATCCAATAAAAGA------------------------------------------------------A--TGGGTCTCCTAAGAACTCAGA-CACAATCATCTCCCTTTCACAGCTCACATCTGTTTGTGCCAATGATATGCAAAAGCAACTTACTGCTCAGCATACTGTACCC-------ACTCTGCCC--AACTGTT----A----------CTCATGTACTTGTG-AAGCAGTTCACAACTTAAGTGTTTATAA----------------------------------------G-----------------------------------------TAGCA-AGC---CATT--TCCTAACCAACAAATATCCTTTGGAGGAC-----------------------------------------------------------------------------------AGAAAAA------TGAAGTCAGTTCAT-GCTTTCCTAACA-CAGATTTTCCCAT-CAGGAAAATAC----TTCCTTGCAAGGGT---CCTTTT
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1034437 265 -   2788317 ACCCAATGAAAGA------------------------------------------------------ACCTGGATTTCCTATGAACCCAAAGCACAACCCTCTCCCCTTTCTAGTTGACATCTGTCTGTGCCAATGATATGCAAA---------------AGCATACTATACACAA-----ACACCACTCTAATCTGTT----A----------CTCACATACTTGTG-AAACAATTCACAACTTAAGTGTTTACAA----------------------------------------G-----------------------------------------TAGCA-AGG---CACT--TCCTAAATAGCAAACACCCACTGGAGGAC-----------------------------------------------------------------------------------AGAAAAA------TAAAGTCAGCTCAT-AT---------------CTTTCCCAT-CAGGAAAATAC----ACTCCCA-----------TCTTT
i dasNov3.JH567436             C 0 C 0
e xipMac1.JH556722                320730 4277 -   2306555 I
e gasAcu1.chrXV                  6160607 4779 +  16198764 I
e ornAna1.Contig30778               2960 1666 +      7217 I
e tetNig2.chr10                  6376320 2971 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382   0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820   0 -   5414369 I
e araMac1.AOUJ01470298               637   0 -       895 I
e takFla1.KE120649                 19761 552 -    165821 I
e fr3.HE591725                    289183 523 -    411779 I
e ficAlb2.chr2                 148476508   0 + 157563209 I
e anoCar2.chr1                 148577473   4 + 263920458 I
e pseHum1.KB221189              55280499   0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214   0 -  25666195 I
e allMis1.JH739256                321407   0 -    882412 I
e falPer1.KB390952               2753956   0 -  18327016 I
e falChe1.KB397350               1707310   0 -   3649919 I
e macEug2.GL109592                104179 1353 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e sarHar1.chr1_GL834688_random    523392 1273 +   3395230 I
e melGal1.chr3                  91313763   0 + 100405168 I
e anaPla1.KB742696               1254472   0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1984803 4081 +   4979691 I
e chrPic2.chrUn_KK088237v1       5683959 314 -  22294289 I
e pelSin1.JH211373               2650239   0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530531674 1355 + 748055161 I
e taeGut2.chr2                 147424537   0 + 156412533 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=274055.000000
s hg38.chr8_KI270814v1_alt         86883 40 +    141812 CCCAGTGGTAAATTTGTGATGTGCCAGCTA-GAAAACCAGA
s ponAbe2.chr8                  59056410 40 + 153482349 CCCAGTGGTAAATTTGTGACATGCCAGCTG-GAAAACCAGA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48135074 40 + 100215132 CCCAGTGGTAAATTTGTGACATGCCAGCTA-GAAAACCAGA
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99342317 40 + 108792865 CCCAGTGGTAAATGGACAACATGCCAGCTA-GAAAGCCTGA
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24008464 40 +  27210278 CCCAGTGGTAAATGGACAACATGCCAGCTA-GAAAGCCTGA
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21190861 40 -  23169006 CCCGGCGGTAAACGGACAACACACCAGCCA-GAAAACCACA
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19213430 39 -  22931326 CTGAGTGGTCCGTCAGGGACACGCTGGATG--AACACCAGA
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2807345 39 -   6207710 CTGAGTGGTCCGTCAGGGACACACTGGATG--AACACCAGA
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10842946 41 +  17242564 CCCAGGGCTCAATCAGTGACACGCTAGCTGTAAAAACCAGA
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84037088 40 +  91571448 CCCAGTGGTCAATCAGTGACACACCAGCTG-GAAAACCAGA
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6810617 39 -  14545593 CCCAGTGGTCAATCAGTGACACACCA-CTG-GAAAACCAGA
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134107767 40 + 140925898 CCCAGCGGTCAACCAGCCGCACGCCAGCCG-GACAACCAGA
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57840636 40 -  64289059 CGCAACAGTCAGTGAGAGCCACACTGGCCT-GAGAACCAGA
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13612966 40 -  19722643 TCCAGCGGTCAACCAGTGACACACGGGCCA-GAAAATCACC
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3035911 40 +   4816872 GCCAGTGGTCAGCCAGCGACACACCGGCCA-GAAAACCACA
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19413456 40 -  23789964 CCCAGGGGTCGGCCAGTGACACATCGGCGG-GAAAACCAGA
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27620901 40 -  46401353 TCCAGTGGTAAACTACTGACTCACCAGCTA-GACAACCAGA
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9968334 40 +  24341844 TCTAGTGGTAAACGAGCAACTCACTAGCTC-GACAACGAGA
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1034702 38 -   2788317 TCCAGGGGTAAATCGGTGACACACAAGCTA-GAAAACCA--
i dasNov3.JH567436             C 0 C 0
s xenTro7.KB021653              83131515 39 - 140444050 CCCAGTGATTAAACCTTTATCCGCAGGCCG-AGAATCCTC-
i xenTro7.KB021653             N 0 C 0
e xipMac1.JH556722                320730 4277 -   2306555 I
e gasAcu1.chrXV                  6160607 4779 +  16198764 I
e ornAna1.Contig30778               2960 1666 +      7217 I
e tetNig2.chr10                  6376320 2971 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120649                 19761 552 -    165821 I
e fr3.HE591725                    289183 523 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280499  0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH739256                321407  0 -    882412 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                104179 1353 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e sarHar1.chr1_GL834688_random    523392 1273 +   3395230 I
e melGal1.chr3                  91313763  0 + 100405168 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1984803 4081 +   4979691 I
e chrPic2.chrUn_KK088237v1       5683959 314 -  22294289 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530531674 1355 + 748055161 I
e taeGut2.chr2                 147424537  0 + 156412533 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=196838.000000
s hg38.chr8_KI270814v1_alt         86923 41 +    141812 CTTCTCC-CACAGGTTTCTCTGCCCAACTGAGAGAGA--CCAGA
s ponAbe2.chr8                  59056450 41 + 153482349 CTTCTCC-CACAGGTTTCTCTGCCCAACTGAGAGAGA--CCAGA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48135114 41 + 100215132 CTTCTCC-CACAGGTTTCTCTGCCCAACTAAAAGAGA--CCAGA
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99342357 39 + 108792865 CTTCTCC-CACAGGTTTTCCAGCTC--CTTGGAGAGA--CTGAA
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24008504 39 +  27210278 CTTCTCC-CGCAGGTTTTCCTGATC--CTTGGAGAGA--CTGAA
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21190901 40 -  23169006 ATT-TCT-CACACGTTTCCCTGCTCAGTTGAAAGAGA--CCAGA
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19213469 42 -  22931326 CTTCTCTCCATATGTTTCCCTGCTTAACTGGCAGAGG--CCAAA
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2807384 42 -   6207710 CTTCTCTCCATACGTTTCCCTGTTTAACTGGCAGAGC--CCAAA
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10842987 39 +  17242564 CTTC---ACACAGGGTTCCCTGCTCAACCGGCAGAAC--CCAAA
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84037128 42 +  91571448 CTTTTCCACACAGGTTTCACTGCCCAGCTGACAGAGC--CCCAA
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6810656 38 -  14545593 CTTCTCTGCACAGGCTTCCCTGCTCA----ACGGAGC--CCAAA
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134107807 41 + 140925898 CTTCCCCGCATGGGTTTCCCCGCTCAGCTGACAGAGC--CC-CA
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57840676 42 -  64289059 CTTCCCCACATGGGCTTCCCCACTCAACCAACAGAGC--CTGAA
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13613006 42 -  19722643 TTTCCCTGCACAGGCTTCTCCACTCAGCTGAGAGAGG--GTGAA
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3035951 42 +   4816872 CTTCCCTGCACAGGCTTCCCTGCTCAACTGACAGAGC--GTGAA
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19413496 42 -  23789964 CCTCTCCACGCAGGCTTCCCTGCTCGACTGACGGGGC--CCAAA
i pteAle1.KB030580             C 0 C 0
s dasNov3.JH567436               1034740 29 -   2788317 -----------AGTTTTCTCTGCTCAAATG--AGAGT--CCAAA
i dasNov3.JH567436             C 0 C 0
s xenTro7.KB021653              83131554 37 - 140444050 CCTCTCT-GGCAGG------AGCCTTAGAGGCAGAGCTACTAAA
i xenTro7.KB021653             C 0 C 0
e xipMac1.JH556722                320730 4277 -   2306555 I
e gasAcu1.chrXV                  6160607 4779 +  16198764 I
e ornAna1.Contig30778               2960 1666 +      7217 I
e tetNig2.chr10                  6376320 2971 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120649                 19761 552 -    165821 I
e fr3.HE591725                    289183 523 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280499  0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH739256                321407  0 -    882412 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                104179 1353 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e sarHar1.chr1_GL834688_random    523392 1273 +   3395230 I
e melGal1.chr3                  91313763  0 + 100405168 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1984803 4081 +   4979691 I
e chrPic2.chrUn_KK088237v1       5683959 314 -  22294289 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530531674 1355 + 748055161 I
e taeGut2.chr2                 147424537  0 + 156412533 I
e triMan1.JH594629               9968374  0 +  24341844 C
e loxAfr3.scaffold_20           27620941  0 -  46401353 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=40794.000000
s hg38.chr8_KI270814v1_alt         86964 36 +    141812 ACTCC---ACTCTTTCCAAAATAGAAGG--G--TTTTTCCCCT---
s ponAbe2.chr8                  59056491 36 + 153482349 ACTCT---ACTCTTTCCGAAATAGCAGG--G--TTTTTCCCTT---
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48135155 38 + 100215132 ACTCT---ACTCTTTCCAAAATAGCAGG--GTTTTTTTCCCCT---
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99342396 38 + 108792865 ACTCTTC-ACCACTTCCAAAATAGCAGT--T--TCTTTCCCTT---
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24008543 38 +  27210278 ACTCTTC-ACCATTTCCAAAAGAGCAGT--T--TCTTTCCCTT---
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21190941 37 -  23169006 ACTGCTC-ATAGTTTCCAAAATAGCACT--T--TCTCTCCCT----
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19213511 36 -  22931326 A--TGTT-ACAGTTTCCAAAAGAGCTGT--T--TCTCTCCCTT---
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2807426 36 -   6207710 A--TGTT-ACAATTTCCAAAAGAGCTGT--T--TCTCTCCCTT---
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10843026 39 +  17242564 AGTCGTTGGCAGTTTCCGGAAGAGCTGT--T--TCTTTCCCTT---
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84037170 39 +  91571448 AATACTTTACAATTTCCAAAAGCGTGGT--T--TCTTTCCCTT---
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6810694 39 -  14545593 AATCCTTTACAGTTTCCAAAAGCGCAGT--T--TCTTTCCCTT---
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134107848 38 + 140925898 AACCGTTCACAGGTTCCCAAAGG---GCTGT--TCTCTCCCTT---
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57840718 31 -  64289059 AACTGTTCACAG-----AAAACA---GT--T--TCTTTCCCTT---
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13613048 36 -  19722643 AACCACTTAAGGGCCTCAAAGGA---GC--T--TCTTTCCCGC---
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3035993 39 +   4816872 AACCATTCACAGGCTCCAAAAGAGCTGC--T--TCTTTCTCTT---
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19413538 24 -  23789964 GATGGTTTA--GTTCTCCGAAGA---GC--T---------------
i pteAle1.KB030580             C 0 C 0
s dasNov3.JH567436               1034769 38 -   2788317 ATTGTTT-ACAGTTTCCAAAATAGCTAT--T--TCTTTCCCTT---
i dasNov3.JH567436             C 0 C 0
s sarHar1.chr1_GL834688_random    524665 33 +   3395230 ----ATT-ACTTTCTTTCTATAAACATA--T--TATCCTCTT----
i sarHar1.chr1_GL834688_random I 1273 C 0
s xenTro7.KB021653              83131591 24 - 140444050 -------------ACTCAAAA-----tt--t--tctcttttttttt
i xenTro7.KB021653             C 0 C 0
e xipMac1.JH556722                320730 4277 -   2306555 I
e gasAcu1.chrXV                  6160607 4779 +  16198764 I
e ornAna1.Contig30778               2960 1666 +      7217 I
e tetNig2.chr10                  6376320 2971 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120649                 19761 552 -    165821 I
e fr3.HE591725                    289183 523 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280499  0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH739256                321407  0 -    882412 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                104179 1353 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr3                  91313763  0 + 100405168 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1984803 4081 +   4979691 I
e chrPic2.chrUn_KK088237v1       5683959 314 -  22294289 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530531674 1355 + 748055161 I
e taeGut2.chr2                 147424537  0 + 156412533 I
e triMan1.JH594629               9968374  0 +  24341844 C
e loxAfr3.scaffold_20           27620941  0 -  46401353 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-250.000000
s hg38.chr8_KI270814v1_alt         87000 2 +    141812 -CC
s ponAbe2.chr8                  59056527 2 + 153482349 -CC
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48135193 2 + 100215132 -CC
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99342434 2 + 108792865 -CC
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24008581 2 +  27210278 -CC
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19213547 2 -  22931326 -CA
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2807462 2 -   6207710 -CA
i camFer1.KB017763             C 0 C 0
s equCab2.chr15                 84037209 2 +  91571448 -CA
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6810733 2 -  14545593 -CA
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134107886 2 + 140925898 -CA
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57840749 2 -  64289059 -CC
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13613084 2 -  19722643 -CC
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3036032 2 +   4816872 -CC
i odoRosDiv1.KB229025          C 0 C 0
s dasNov3.JH567436               1034807 2 -   2788317 -TA
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530533029 2 + 748055161 -CA
i monDom5.chr1                 I 1355 I 7
s xenTro7.KB021653              83131615 2 - 140444050 tt-
i xenTro7.KB021653             C 0 C 0
e xipMac1.JH556722                320730 4277 -   2306555 I
e gasAcu1.chrXV                  6160607 4779 +  16198764 I
e ornAna1.Contig30778               2960 1666 +      7217 I
e tetNig2.chr10                  6376320 2971 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120649                 19761 552 -    165821 I
e fr3.HE591725                    289183 523 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221189              55280499 0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH739256                321407 0 -    882412 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                104179 1353 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e sarHar1.chr1_GL834688_random    524698 0 +   3395230 C
e melGal1.chr3                  91313763 0 + 100405168 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1984803 4081 +   4979691 I
e chrPic2.chrUn_KK088237v1       5683959 314 -  22294289 I
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr2                 147424537 0 + 156412533 I
e triMan1.JH594629               9968374 0 +  24341844 C
e loxAfr3.scaffold_20           27620941 0 -  46401353 C
e pteAle1.KB030580              19413562 0 -  23789964 C
e orcOrc1.KB316907              10843065 0 +  17242564 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21190978 0 -  23169006 C
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=11221.000000
s hg38.chr8_KI270814v1_alt         87002  9 +    141812 -----------------CATTCTCCT
s ponAbe2.chr8                  59056529  9 + 153482349 -----------------CATTCTCCT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48135195  9 + 100215132 -----------------CATTCTCCT
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99342436  9 + 108792865 -----------------CAGTCTCCT
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24008583  9 +  27210278 -----------------CAGTCTCCT
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21190978  6 -  23169006 --------------------TCTCCT
i otoGar3.GL873541             C 0 M 110
s vicPac2.KB632437              19213549  9 -  22931326 -----------------TGGCCTCCT
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2807464  9 -   6207710 -----------------TTGCCTCCT
i camFer1.KB017763             C 0 C 0
s equCab2.chr15                 84037211  8 +  91571448 -----------------CATCCTCC-
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6810735  8 -  14545593 -----------------CGTCCTCC-
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134107888  9 + 140925898 -----------------CGCCCCCCT
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57840751  9 -  64289059 -----------------TGCCCTCCT
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13613086  9 -  19722643 -----------------CGCCCTCCT
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3036034  9 +   4816872 -----------------TACCCTCCT
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19413562  9 -  23789964 -----------------CGCCCCGCT
i pteAle1.KB030580             C 0 C 0
s dasNov3.JH567436               1034809  9 -   2788317 -----------------CATCTTCCT
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530533038  9 + 748055161 -----------------CTCTCCATT
i monDom5.chr1                 I 7 I 6
s sarHar1.chr1_GL834688_random    524698  4 +   3395230 ----------------------TACT
i sarHar1.chr1_GL834688_random C 0 I 6
s macEug2.GL109592                105532  9 -    117391 -----------------CTCTCTCCT
i macEug2.GL109592             I 1353 I 6
s xenTro7.KB021653              83131617 24 - 140444050 ctttttGAAACTTCGAATAAACTC--
i xenTro7.KB021653             C 0 C 0
e xipMac1.JH556722                320730 4277 -   2306555 I
e gasAcu1.chrXV                  6160607 4779 +  16198764 I
e ornAna1.Contig30778               2960 1666 +      7217 I
e tetNig2.chr10                  6376320 2971 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120649                 19761 552 -    165821 I
e fr3.HE591725                    289183 523 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280499  0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH739256                321407  0 -    882412 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr3                  91313763  0 + 100405168 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1984803 4081 +   4979691 I
e chrPic2.chrUn_KK088237v1       5683959 314 -  22294289 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr2                 147424537  0 + 156412533 I
e triMan1.JH594629               9968374  0 +  24341844 C
e loxAfr3.scaffold_20           27620941  0 -  46401353 C
e orcOrc1.KB316907              10843065  0 +  17242564 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=221385.000000
s hg38.chr8_KI270814v1_alt         87011 78 +    141812 --CCCCTCACCACCATGTTTGTT-GAATCAACAGGACAGCCAGAAAGGCCA-AAAGT-ACCACAG-TCTGGATAAAAGGTGGTC
s ponAbe2.chr8                  59056538 79 + 153482349 --CCCCTCACCACCATGTTTGTT-GAATCAACAGGACAGCCAGAAAGGCCG-AAAGT-ACCACAGTTCTGGATAAAAGGTGGTC
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48135204 79 + 100215132 --CCCCTCACCACCATGTTTGTT-GAATCAACAGGACAGCCAGAAAGGCCA-AAAGT-ACCACAGTTCTGGATAAAAGGTGGTC
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99342445 77 + 108792865 --CCCCT---CACCAAGTCTGTT-GCACCAACAGGATGGCCAGAAAGGCCA-CAAGTCACCACCGTTCTTGCTGAAAGGTGATC
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24008592 79 +  27210278 --CCCCTCA-CACCAAGTCTGCT-ACACCAACAGGACGGCCAGAAAAGCCA-AAAGTCACCACTGTTCTGGCTGAAAGGTGATC
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19213558 76 -  22931326 --CCCCA---TCCCACACTCAGA-GCACCAGCAGGACAACCAGAAGGGCCA-C-AGTCTCCACTGTTAGGGCTGAAAGGTGGTG
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2807473 76 -   6207710 --CCCCG---TCCCACACTCAGA-GCACCAGCAGGACAACCAGAAGGGCCA-C-AGTCTCCACTGTTAGGGCTGAAAGGTGGTG
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10843065 70 +  17242564 ------------CCACATCAGGA-GCACCAGCAGGACAGCCGGAAAGGCCA-CGGGTCACCACTGTTAGGGCCGGAAGGTGGTG
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84037219 63 +  91571448 -------------------TAGA-CTACCAGCAGGACGACGAGAAAGGCCA-CAGGTCATCACTGTTAGGGCTGACAGGTGGTG
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6810743 64 -  14545593 -------------------TAGA-CTGCCAGCAGGACGACCAGAAAGGCCGTTAAGTCACCACTGTTGGGGCTGACAGGCAGTG
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134107897 77 + 140925898 --TGCCA---TCCCACGTTTAGA-GCACCAGCAGGAGGACCGGAAAGGCCA-TGGGTCACCCCTGGTGTGGCTGAAAGGTGGTG
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57840760 77 -  64289059 --CTCTT---TCCCACATTTATG-GCACCAGCTAGATGACCGGAAAGGCCA-TGGGACACCACCGGTATGCCTGAAAGGTGATG
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13613095 76 -  19722643 --GCCCT---TCCCACGTTTACA-GCACCAGCAGCATGACCAGAAAGGCCA-CGGGTCACCG-CAGTAGAGCTGAAAGGTGGTG
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3036043 77 +   4816872 --CCCCT---TCCCACAGTTACA-GCACCAGCAGGGTGACCAGAAAGGCCT-TGGGGCACCATCGGTATGACTGAAAGGTAGTG
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19413571 42 -  23789964 --CCCCT---TACTGTGTCTGGA-GCACCAGCAGG------------------------------------CTTAACGGTGGTG
i pteAle1.KB030580             C 0 C 0
s dasNov3.JH567436               1034818 77 -   2788317 --CTCCT---TACCAAGTTTATA-GCACCGACAGGAAGACCAGAAAGGCCA-AGAGTCATCCCTGTTATGGCTGAAAGGTAGAC
i dasNov3.JH567436             C 0 I 4
s monDom5.chr1                 530533053 73 + 748055161 --AACCA---TTGTATGTTTATATATGTCAGGATGA-AACTAGAAAGGCCA-TGAGTGCCAATTCTTTCAGCTCA----TGATG
i monDom5.chr1                 I 6 I 3
s sarHar1.chr1_GL834688_random    524708 73 +   3395230 --ATCCa---ttgtatatttatacatgccAGGCTGA-AATTAGAAACACCA-AGAGTGCCCAGTTTTTTGGCTCA----TGGTG
i sarHar1.chr1_GL834688_random I 6 I 3
s macEug2.GL109592                105547 73 -    117391 --ACCCA---TTGTATGTTTATACTTATCAGGCTGA-AACTATAAAGACCA-AGAGTGTCCATTCTTCTGGCTCA----TGATG
i macEug2.GL109592             I 6 I 3
s xenTro7.KB021653              83131641 77 - 140444050 ATTCCCA---CAAAAATCTGACT-TTAAGCAAATGCCCCCCTCAAGGTTTA-AATGTCTTCAGTATAGGCAATAAAACATTT--
i xenTro7.KB021653             C 0 C 0
e xipMac1.JH556722                320730 4277 -   2306555 I
e gasAcu1.chrXV                  6160607 4779 +  16198764 I
e ornAna1.Contig30778               2960 1666 +      7217 I
e tetNig2.chr10                  6376320 2971 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120649                 19761 552 -    165821 I
e fr3.HE591725                    289183 523 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280499  0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH739256                321407  0 -    882412 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr3                  91313763  0 + 100405168 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1984803 4081 +   4979691 I
e chrPic2.chrUn_KK088237v1       5683959 314 -  22294289 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr2                 147424537  0 + 156412533 I
e triMan1.JH594629               9968374  0 +  24341844 C
e loxAfr3.scaffold_20           27620941  0 -  46401353 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21190984 110 -  23169006 M
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=184243.000000
s hg38.chr8_KI270814v1_alt         87089 26 +    141812 CCAGGATGGCAAGTCAAAGGAAGCGG
s ponAbe2.chr8                  59056617 26 + 153482349 CCAGGATGGCAAGTCAAAGGAAGCGG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48135283 26 + 100215132 CCAGGATGGCAAGTCAAAGGAAGCGA
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99342522 26 + 108792865 CCAAGATGGCAAATCAGAGGAAGCGG
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24008671 26 +  27210278 CCAAGATGGCAAATCAGAGGAAGCAG
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19213634 24 -  22931326 -CAAGATGGCCAGTCAA-GGAGACAG
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2807549 24 -   6207710 -CAAGATGGCCAGTCAA-GGAGACAG
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10843135 26 +  17242564 CCACGATGGGCAGTCAAGGGAGCCCA
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84037282 25 +  91571448 CTAGGATAGCAAATC-AGGGAAACTG
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6810807 25 -  14545593 CCAGGAAGGCAAATC-AGGGAAACTG
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134107974 26 + 140925898 GCAAGGTAGCAAATCAAGGGAAACTG
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57840837 26 -  64289059 CCAAGGTAGCAAATCGAGGGAAACTG
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13613171 26 -  19722643 CGAACGTAGCAAAATGAGGGAAGCTG
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3036120 26 +   4816872 CCAACGTAGCAGATCGAGGGAAACTG
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19413613 26 -  23789964 CCAAGATGGCAGATCAAGGGACAGCG
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27620941 26 -  46401353 TCAAGATTACAAATCAAAGGAAAATG
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9968374 25 +  24341844 CCAAGATTACAAATCAAAGG-AAATG
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1034899 26 -   2788317 CCAAGATTGTAAATAAAGCGAAATGG
i dasNov3.JH567436             I 4 C 0
s monDom5.chr1                 530533129 26 + 748055161 ACAAAATAGTAAATAAAAGCAAATGT
i monDom5.chr1                 I 3 C 0
s sarHar1.chr1_GL834688_random    524784 26 +   3395230 ATAAGATAGCAAATAAAGGCAAATGT
i sarHar1.chr1_GL834688_random I 3 C 0
s macEug2.GL109592                105623 26 -    117391 CTAAGATGGCAAATAAAAGCAAACAT
i macEug2.GL109592             I 3 C 0
s xenTro7.KB021653              83131718 26 - 140444050 TGGGTAGAGCCGTTCAATTGAATTCA
i xenTro7.KB021653             C 0 C 0
e xipMac1.JH556722                320730 4277 -   2306555 I
e gasAcu1.chrXV                  6160607 4779 +  16198764 I
e ornAna1.Contig30778               2960 1666 +      7217 I
e tetNig2.chr10                  6376320 2971 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120649                 19761 552 -    165821 I
e fr3.HE591725                    289183 523 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280499  0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH739256                321407  0 -    882412 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr3                  91313763  0 + 100405168 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1984803 4081 +   4979691 I
e chrPic2.chrUn_KK088237v1       5683959 314 -  22294289 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr2                 147424537  0 + 156412533 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21190984 110 -  23169006 M
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-15875.000000
s hg38.chr8_KI270814v1_alt         87115 66 +    141812 AGATAGCAAAAAGC------------------CATTTTGT--------CTTC-------------C-----------C----AATAAAAACATATTG---GCAT---AGCTGC-TGCCC---TGGGGGAC
s ponAbe2.chr8                  59056643 77 + 153482349 AGATAGCAAAAAGC------------------CATTTTGT--------CTTC-------------CCAATAAGAACAC----AATAAGAACATACTG---GCAT---AGCTGC-TGCCC---TGGGGGAC
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48135309 66 + 100215132 AGATAGCAAAAAGC------------------CATTTTGT--------CTTC-------------C-----------C----AATAAGAACATGTTG---GCAT---AGCCAC-TGCCC---TGGGGGAC
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99342548 63 + 108792865 AAATA--AAAAAGC------------------CATCCTGT--------CATC-------------C-----------C----AATGAGAATGCACTG---ATGT---GGCCGC-TGCCC---CGCAGG-C
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24008697 66 +  27210278 AAATA--AAAAAGC------------------CATCCTGT--------CGTC-------------C-----------C----AGTGAGAATGCACTG---ACGT---GGCCGC-TGCCCCCACGCAGG-C
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21191094 66 -  23169006 GGATCACAAACTGC------------------CACGCTGT--------GGTC-------------C-----------C----AGTCAGAAAGCACTG---GAGT---GGCTGC-CGGCC---CAGCAGGC
i otoGar3.GL873541             M 110 C 0
s vicPac2.KB632437              19213658 52 -  22931326 AGGCAGAACACC---------------------------------------C-------------C-----------C----AGGAAGAAGGCGCCA---GGCG----GCGGC-TGCCC---GGACGGGC
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2807573 52 -   6207710 AGGCAAAACACC---------------------------------------C-------------C-----------C----AGGAAGAAGGCGCCA---GGCG----GTGGC-TGCCC---GGACGGGC
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10843161 65 +  17242564 AGGCAGCACAGCGC------------------CACCCCGC--------CATC-------------C-----------C----AGGGAGAAGGCTCGA---GGCC----GCGGC-TGCCC---CGACTGGC
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84037307 65 +  91571448 AGGCAGCAAGCAG-------------------CATCCTGC--------CATC-------------C-----------C----AGTTAGAACGCATGA---ATGT---GGCTGC-TCCCC---TGACAGGA
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6810832 65 -  14545593 CGGCAACAGGAAG-------------------TGTCCCGC--------CATC-------------C-----------C----AGTAAGAATGCACAA---ATGT---GGCGGC-TGCCC---AGACAGGC
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134108000 55 + 140925898 AGGGAGCAGGATGC------------------CGTCCTGC--------CATC-------------C-----------C----AGTAAGAA-------------C----ACCGC-TGCCC---CAACAGGC
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57840863 61 -  64289059 AGGCAGCAAAAAAC------------------CATCTT-----------AT--------------C-----------C----AGTAAGAAGCTGGGT---GTGT----GCTGT-GGCCT---CGACAGGC
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13613197 63 -  19722643 AGGCAGCAAGCAGC------------------CGTCCTGC--------CAT--------------C-----------C----AGTAGGAAGGCGCAT---GTAT----GTCGT--GCCT---GGACAGGC
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3036146 61 +   4816872 AGGCAGCAAGAAGC------------------CATCACGC--------CAT--------------C-----------C----AGGAGGAAGGCG--T---GTGT----GCCGT--GCCC---TGACAGGC
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19413639 64 -  23789964 TGGCAGCCAGAGGC------------------CGTCCTGC--------CACC-------------C-----------C----AGTAAGGATATGCGA---ACAC---AGCGGC-TGCCC---TGACGG--
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27620967 68 -  46401353 AGAGAGCAAAAAGC------------------CCTTCTGT--------CATC-------------C-----------C----AATTAAAATATAATA---ACATA--GGTTCCCTGCCG---TGGTAGGC
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9968399 68 +  24341844 AGATAGCAAAAAGC------------------CATCCTGT--------CATT-------------C-----------C----AATTAAAATATAATA---ATATA--GGTTGCCTGCCG---TGCTAAGC
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1034925 68 -   2788317 AGACAGCAAAAAGT------------------CATCCTGT--------GATC-------------C-----------C----AGTAAAAATGTAACG---ATGTA--GGCTGCCAGCCT---TGGTAGAC
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530533155 89 + 748055161 GGATAACAGATGGC------------------CATCTTGTCTCT----CATTCTCCACAC-----C-----------CTCATATTAAAAACATAATGAATATATATGAATTGCCTGCCT---TAATAAGG
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    524810 81 +   3395230 GGAGAACAGATGGC------------------CATCT-----------CATTCCCTACCTC----C-----------CCTATATTAAAAACAGAATGA--ATATATGAGCTGCCTGCTT---TAATAGGC
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL109592                105649 92 -    117391 GGAGAACAGACGGC------------------CATCTTGTCTCTCC--CATTCTCCACCCCACCTC-----------CATATTTTAAAAACATAATG----TATATAAGCTGCCTGCCT---TAATTGTT
i macEug2.GL109592             C 0 C 0
s xenTro7.KB021653              83131744 82 - 140444050 AAATTGCAATTTGCACATTTAACTTGGATTCACAACTTACCACTACTGCGTC-------------C-----------C----ATGGAG------------GCAG---AGCTGA--GCCA---AGAAGTAC
i xenTro7.KB021653             C 0 N 0
e xipMac1.JH556722                320730 4277 -   2306555 I
e gasAcu1.chrXV                  6160607 4779 +  16198764 I
e ornAna1.Contig30778               2960 1666 +      7217 I
e tetNig2.chr10                  6376320 2971 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120649                 19761 552 -    165821 I
e fr3.HE591725                    289183 523 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280499  0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH739256                321407  0 -    882412 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr3                  91313763  0 + 100405168 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1984803 4081 +   4979691 I
e chrPic2.chrUn_KK088237v1       5683959 314 -  22294289 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr2                 147424537  0 + 156412533 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-155994.000000
s hg38.chr8_KI270814v1_alt         87181 52 +    141812 CAA-TTTA-CTGTGCTTCTACATGGTA-TG---AAA--TGTGCTCCCTGTGTCACAG-----TGT
s ponAbe2.chr8                  59056720 52 + 153482349 CAA-CTTA-CTGTCCTTGTACATGGTA-TG---AAA--TGTGCTCCCTGTGTCACGG-----TGT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48135375 52 + 100215132 CAA-CTTA-CTGTGATTCTACATGGTA-TG---AAA--TGTGCTCCCTGTGTCACGG-----TGT
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99342611 49 + 108792865 C---GTTA-CTGTGACTCTACATGGTC-TA---AAA--GCTGCCCCCAGTGTCACA------TGG
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24008763 52 +  27210278 CAA-GTCA-CTGTGACTCGACATGGTC-TA---AAA--GCTGCCCCCGGTGTCACAG-----TGG
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21191160 51 -  23169006 CAG-GCTC-CCGTGACTCTGCCCGATG-GA---AAC--GCTGCCCTC-ATGTGACAG-----TCT
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19213710 56 -  22931326 CAGCATGA-CCCTGATGCCACGTTCTG-CG---AAT--GCTGCCCCTCGCTGAGCAGGA--CTTT
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2807625 56 -   6207710 CAGCGTGA-CCCTGATGCCACGTTCTG-CG---AAT--GCTGCTCCTCGCTGAGCAGGA--CTTT
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10843226 53 +  17242564 CAGCGTGA-CGC-GATTCCACGTCCTA-TG---AAA--GCCGCCCCCCGT--GACAGGA--CTCT
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84037372 56 +  91571448 CAGTGTGA-CTGTGATTCCACATTCCA-CA---AAA--ACAGTCCCGCAACGAGCAGGA--CTTT
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6810897 55 -  14545593 CGGTGTGA-CTGTGATTCCACGTTCCA-CA---AAA--ATGATCCC-CAATGAGCAGGA--TTTT
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134108055 49 + 140925898 TGGCGTGA-CTGCGGTTCTCGGTTCCA-CG---GGG--A------G-CGGGAATCAGGG--TCGT
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57840924 55 -  64289059 CAGCAGGA-CTGCAATTCTACGTCCCC-CA---ACG--GCCGTCCC-TGGAGAGTTGGT--TCTT
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13613260 55 -  19722643 CGGGATGA-CCGTGACTCTAACTCCCC-CA---AGG--ACTGTCCC-CGGGAAGCGGGG--TCCT
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3036207 55 +   4816872 CAGCATGA-CCGCGACTCTACGTCCCC-CA---GTG--ACTGCTCC-CAGTGAGCTGGG--TGGT
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19413703 48 -  23789964 CCGCGTGA-CTGTGATT-------CCG-CA---AAC--GCTGTCCCCCCACGAGCAGGA--CTT-
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27621035 59 -  46401353 CAATATTG-CTGTGACTCTACATTATATTA---AAA--AATTGTCATCCAGTGTTAATAACTTTC
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9968467 58 +  24341844 CAATATTA-CTGTAATTCTACATCATA-TA---AAA--AACTGTCATCCAGTGATAATGATTTTT
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1034993 58 -   2788317 CAATATTA-TTGTGATGCAACATTATA-TC---AAA--GCTGGTCATTCCACAATAATGATTTTT
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530533244 56 + 748055161 TAATATGATCCTTATTGCTCAATAACA-TA----AA--AATACTTTTTAATGATTAAAA--ATAT
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    524891 60 +   3395230 TAACATTGTTCTTAATGCTACAtggta-tgaaaaaa--aattctatttaatgaTTAGAA--CTAT
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL109592                105741 59 -    117391 TAATATTATCCTTAATGCTAGATCATG-TG-AAAAA--AATACTATTTAATGATTAAAA--ATAT
i macEug2.GL109592             C 0 C 0
s xenTro7.KB021650             130832298 48 + 150913983 CAA-TTCA-TCATACTGTTAAATTATA-GC---AAATTAATGCTAAATGACAAC-----------
i xenTro7.KB021650             N 0 C 0
e xipMac1.JH556722                320730 4277 -   2306555 I
e gasAcu1.chrXV                  6160607 4779 +  16198764 I
e ornAna1.Contig30778               2960 1666 +      7217 I
e tetNig2.chr10                  6376320 2971 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120649                 19761 552 -    165821 I
e fr3.HE591725                    289183 523 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280499  0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH739256                321407  0 -    882412 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr3                  91313763  0 + 100405168 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1984803 4081 +   4979691 I
e chrPic2.chrUn_KK088237v1       5683959 314 -  22294289 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr2                 147424537  0 + 156412533 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=12381.000000
s hg38.chr8_KI270814v1_alt         87233 3 +    141812 CAA
s ponAbe2.chr8                  59056772 3 + 153482349 CAA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48135427 3 + 100215132 CAA
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99342660 3 + 108792865 CAA
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24008815 3 +  27210278 CAA
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21191211 3 -  23169006 CCG
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19213766 3 -  22931326 TAA
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2807681 3 -   6207710 TAA
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10843279 3 +  17242564 TCG
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84037428 3 +  91571448 TAA
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6810952 3 -  14545593 TAA
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134108104 3 + 140925898 TAA
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57840979 3 -  64289059 TGA
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13613315 3 -  19722643 GGA
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3036262 3 +   4816872 CGA
i odoRosDiv1.KB229025          C 0 C 0
s loxAfr3.scaffold_20           27621094 3 -  46401353 AAA
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9968525 3 +  24341844 AAA
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1035051 3 -   2788317 AAA
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530533300 3 + 748055161 AAA
i monDom5.chr1                 C 0 I 2
s sarHar1.chr1_GL834688_random    524951 3 +   3395230 AAA
i sarHar1.chr1_GL834688_random C 0 I 2
s macEug2.GL109592                105800 3 -    117391 AAA
i macEug2.GL109592             C 0 I 2
s xipMac1.JH556722                325007 3 -   2306555 CAG
i xipMac1.JH556722             I 4277 C 0
e gasAcu1.chrXV                  6160607 4779 +  16198764 I
e xenTro7.KB021650             130832346 0 + 150913983 C
e ornAna1.Contig30778               2960 1666 +      7217 I
e tetNig2.chr10                  6376320 2971 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120649                 19761 552 -    165821 I
e fr3.HE591725                    289183 523 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221189              55280499 0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH739256                321407 0 -    882412 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr3                  91313763 0 + 100405168 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1984803 4081 +   4979691 I
e chrPic2.chrUn_KK088237v1       5683959 314 -  22294289 I
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr2                 147424537 0 + 156412533 I
e pteAle1.KB030580              19413751 0 -  23789964 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=1810.000000
s hg38.chr8_KI270814v1_alt         87236 1 +    141812 C
s ponAbe2.chr8                  59056775 1 + 153482349 C
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48135430 1 + 100215132 C
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99342663 1 + 108792865 T
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24008818 1 +  27210278 T
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21191214 1 -  23169006 T
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19213769 1 -  22931326 T
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2807684 1 -   6207710 T
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10843282 1 +  17242564 T
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84037431 1 +  91571448 C
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6810955 1 -  14545593 T
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134108107 1 + 140925898 G
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57840982 1 -  64289059 G
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13613318 1 -  19722643 C
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3036265 1 +   4816872 C
i odoRosDiv1.KB229025          C 0 C 0
s loxAfr3.scaffold_20           27621097 1 -  46401353 T
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9968528 1 +  24341844 T
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1035054 1 -   2788317 T
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530533305 1 + 748055161 T
i monDom5.chr1                 I 2 C 0
s sarHar1.chr1_GL834688_random    524956 1 +   3395230 T
i sarHar1.chr1_GL834688_random I 2 C 0
s macEug2.GL109592                105805 1 -    117391 T
i macEug2.GL109592             I 2 C 0
s tetNig2.chr10                  6379291 1 +  13272281 C
i tetNig2.chr10                I 2971 C 0
s xipMac1.JH556722                325010 1 -   2306555 C
i xipMac1.JH556722             C 0 C 0
e gasAcu1.chrXV                  6160607 4779 +  16198764 I
e xenTro7.KB021650             130832346 0 + 150913983 C
e ornAna1.Contig30778               2960 1666 +      7217 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120649                 19761 552 -    165821 I
e fr3.HE591725                    289183 523 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221189              55280499 0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH739256                321407 0 -    882412 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr3                  91313763 0 + 100405168 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1984803 4081 +   4979691 I
e chrPic2.chrUn_KK088237v1       5683959 314 -  22294289 I
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr2                 147424537 0 + 156412533 I
e pteAle1.KB030580              19413751 0 -  23789964 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=13384.000000
s hg38.chr8_KI270814v1_alt         87237 1 +    141812 A
s ponAbe2.chr8                  59056776 1 + 153482349 G
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48135431 1 + 100215132 G
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99342664 1 + 108792865 G
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24008819 1 +  27210278 G
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21191215 1 -  23169006 G
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19213770 1 -  22931326 G
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2807685 1 -   6207710 G
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10843283 1 +  17242564 G
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84037432 1 +  91571448 G
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6810956 1 -  14545593 A
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134108108 1 + 140925898 G
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57840983 1 -  64289059 G
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13613319 1 -  19722643 G
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3036266 1 +   4816872 G
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19413751 1 -  23789964 G
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27621098 1 -  46401353 A
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9968529 1 +  24341844 A
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1035055 1 -   2788317 G
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530533306 1 + 748055161 G
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    524957 1 +   3395230 A
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL109592                105806 1 -    117391 G
i macEug2.GL109592             C 0 C 0
s cheMyd1.KB479743               1988884 1 +   4979691 a
i cheMyd1.KB479743             I 4081 C 0
s xenTro7.KB021650             130832346 1 + 150913983 A
i xenTro7.KB021650             C 0 C 0
s tetNig2.chr10                  6379292 1 +  13272281 G
i tetNig2.chr10                C 0 C 0
s xipMac1.JH556722                325011 1 -   2306555 A
i xipMac1.JH556722             C 0 C 0
e gasAcu1.chrXV                  6160607 4779 +  16198764 I
e ornAna1.Contig30778               2960 1666 +      7217 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120649                 19761 552 -    165821 I
e fr3.HE591725                    289183 523 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221189              55280499 0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH739256                321407 0 -    882412 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr3                  91313763 0 + 100405168 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e chrPic2.chrUn_KK088237v1       5683959 314 -  22294289 I
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr2                 147424537 0 + 156412533 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-111.000000
s hg38.chr8_KI270814v1_alt         87238 1 +    141812 T
s ponAbe2.chr8                  59056777 1 + 153482349 T
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48135432 1 + 100215132 T
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99342665 1 + 108792865 T
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24008820 1 +  27210278 T
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21191216 1 -  23169006 T
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19213771 1 -  22931326 T
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2807686 1 -   6207710 T
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10843284 1 +  17242564 T
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84037433 1 +  91571448 T
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6810957 1 -  14545593 T
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134108109 1 + 140925898 A
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57840984 1 -  64289059 G
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13613320 1 -  19722643 G
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3036267 1 +   4816872 G
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19413752 1 -  23789964 T
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27621099 1 -  46401353 T
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9968530 1 +  24341844 T
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1035056 1 -   2788317 T
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530533307 1 + 748055161 C
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    524958 1 +   3395230 C
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL109592                105807 1 -    117391 C
i macEug2.GL109592             C 0 C 0
s ornAna1.Contig30778               4626 1 +      7217 T
i ornAna1.Contig30778          I 1666 C 0
s cheMyd1.KB479743               1988885 1 +   4979691 C
i cheMyd1.KB479743             C 0 C 0
s xenTro7.KB021650             130832347 1 + 150913983 T
i xenTro7.KB021650             C 0 C 0
s tetNig2.chr10                  6379293 1 +  13272281 T
i tetNig2.chr10                C 0 C 0
s xipMac1.JH556722                325012 1 -   2306555 G
i xipMac1.JH556722             C 0 C 0
e gasAcu1.chrXV                  6160607 4779 +  16198764 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120649                 19761 552 -    165821 I
e fr3.HE591725                    289183 523 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221189              55280499 0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH739256                321407 0 -    882412 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr3                  91313763 0 + 100405168 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e chrPic2.chrUn_KK088237v1       5683959 314 -  22294289 I
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr2                 147424537 0 + 156412533 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=362600.000000
s hg38.chr8_KI270814v1_alt         87239 11 +    141812 CATACACATTT
s ponAbe2.chr8                  59056778 11 + 153482349 CATACACATTT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48135433 11 + 100215132 TATACACATTT
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99342666 11 + 108792865 CATACCCCTTT
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24008821 11 +  27210278 CATACCCCTTT
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21191217 11 -  23169006 CATACCCCTTT
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19213772 11 -  22931326 CATACCCCTTT
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2807687 11 -   6207710 CATACCCCTTT
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10843285 11 +  17242564 CATACCCCTTT
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84037434 11 +  91571448 CATACCCCTTT
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6810958 11 -  14545593 CATACCCCTTT
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134108110 11 + 140925898 CATACCCCTTT
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57840985 11 -  64289059 CATACCCCTTT
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13613321 11 -  19722643 CTTACCCCTTT
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3036268 11 +   4816872 CTTACCCCTTT
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19413753 11 -  23789964 CATACCCCTTT
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27621100 11 -  46401353 CATACCCCTTT
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9968531 11 +  24341844 CATACCCCTTT
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1035057 11 -   2788317 CATACCCCTTT
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530533308 11 + 748055161 CATACCCCCTT
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    524959 11 +   3395230 CATACCCCTTT
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL109592                105808 11 -    117391 CATACCCCCTT
i macEug2.GL109592             C 0 C 0
s ornAna1.Contig30778               4627 11 +      7217 CTTACCCCTTT
i ornAna1.Contig30778          C 0 C 0
s cheMyd1.KB479743               1988886 11 +   4979691 CATACCCCTTT
i cheMyd1.KB479743             C 0 C 0
s chrPic2.chrUn_KK088237v1       5684273 11 -  22294289 CTTACCCCTTT
i chrPic2.chrUn_KK088237v1     I 314 C 0
s xenTro7.KB021650             130832348  7 + 150913983 ----CATTTTT
i xenTro7.KB021650             C 0 C 0
s tetNig2.chr10                  6379294 11 +  13272281 CTTACCCCTTT
i tetNig2.chr10                C 0 C 0
s fr3.HE591725                    289706 11 -    411779 CAGACCCCTTT
i fr3.HE591725                 I 523 C 0
s takFla1.KE120649                 20313 11 -    165821 CAGACCCCTTT
i takFla1.KE120649             I 552 C 0
s xipMac1.JH556722                325013 11 -   2306555 TTTACCCCTTT
i xipMac1.JH556722             C 0 C 0
s gasAcu1.chrXV                  6165386 11 +  16198764 CTTACCCCTTT
i gasAcu1.chrXV                I 4779 C 0
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280499  0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH739256                321407  0 -    882412 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr3                  91313763  0 + 100405168 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr2                 147424537  0 + 156412533 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=2039365.000000
s hg38.chr8_KI270814v1_alt         87250 65 +    141812 TACTCATTTCTGGT--------------TCCCATTTAGCAAACTGTCCAAAGGGAAGGAGATTACATTG---ATG-----TTCTGAA
s ponAbe2.chr8                  59056789 65 + 153482349 TACTCATTTCTGGT--------------CCCCATTTAGCAAACTGTCCAAAGGGAAGGAGATTATATTG---ATA-----CTCTGAA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48135444 65 + 100215132 TACTCATTTCTGGT--------------CCCCATTTAGCAAGCTGTCCAAAGGGAAGGAGATTATATTG---ATA-----TTCTGAA
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99342677 68 + 108792865 CACTCCTTTCAGGT--------------CCCCCTTCAGCAAACTGTCCAAAGGGAAGGAGATTATGTTGTTCATA-----TTCTGAA
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24008832 68 +  27210278 CACTCCTTTCAGGT--------------CCCCCTTCAGCAAACTGTCCAAAGGGAAGGAGATTATGTTGTTCATA-----TTCTGAA
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21191228 68 -  23169006 CACTCCTTTCAGGT--------------CCCCCTTCAGCAAACTGTCCAAAGGGAAGGAGATTATGTTGTTCATA-----TTCTGAA
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19213783 68 -  22931326 CACTCCTTTCAGGT--------------CCCCCTTCAGCAAACTGTCCAGAGGGAAGGAGATTATGTTGTTCATA-----TTCTGAA
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2807698 68 -   6207710 CACTCCTTTCAGGT--------------CCCCCTTCAGCAAACTGTCCAGAGGGAAGGAGATTATGTTGTTCATA-----TTCTGAA
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10843296 68 +  17242564 CACTCCTTTTAGGT--------------CCCCCTTCAGCAAACTGTCCAGAGGGAAGGAGATTATGTTGTTCATA-----TTCTGAA
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84037445 68 +  91571448 CACTCCTTTTAGGT--------------CCCCCTTCAGCAAACTGTCCAGAGGGAAAGAGATGATGTTGTTCATA-----TTCTGAA
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6810969 68 -  14545593 CACTCCTTTTAGGT--------------CCCCCTTCAGCAAACTGTCCAAAGGGAAGGAGATGATGTTGTTCATA-----TTCTGAA
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134108121 68 + 140925898 CACGCCTTTCAGGT--------------CCCCCTTCAGCAGACTGTCCAGAGGGAAGGAGATGATGTTGTTCATA-----TTCTGAA
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57840996 68 -  64289059 CACTCCTTTCAGGT--------------CTCCCTTCAGCAGACTGTCCAAGGGGAAGGAGATGATGTTGTTCATA-----TTCTGAA
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13613332 68 -  19722643 CACTCCTTTCAGGT--------------CCCCCTTCAGCAAACTGTCCAGAGGGAAGGAGATGATGTTGTTCATA-----TTCTGAA
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3036279 68 +   4816872 CACTCCTTTCAGGT--------------CTCCTTTCAGCAAACTGTCCAGAGGGAAGGAGATGATGTTGTTCATA-----TTCTGAA
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19413764 68 -  23789964 CACTCCTTTGAGGT--------------CGCCCTTCAGCAAACTGTCCAGAGGGAAGGAGATGATGTTGTTCATA-----TTCTGAA
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27621111 68 -  46401353 CACTCCTTTTAGGT--------------CTCCTTTCAGCAAACTGTCCAAAGGGAAGGAGATTATGTTGTTCATA-----TTCTGAA
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9968542 68 +  24341844 TACTCCCTTTAGGT--------------CTCCCTTCAGCAAACTGTCCAAAGGGAAGGAGATTATGTTGTTCATA-----TTCTGAA
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1035068 68 -   2788317 TACTCCTTTTAGGT--------------CTCCCTTCAGCAAACTGTCCAAAGGGAAGGAGATTATGTTGTTCATA-----TTCTGAA
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530533319 68 + 748055161 TACTCCTTTAAGGT--------------CTCCTTTCAGCAAACTGTCCAAAGGGAAAGAAATTATGTTGTTCATA-----TTCTGAA
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    524970 68 +   3395230 TACTCCTTTCAGGT--------------CTCCTTTCAGCAAACTgtccaaaggaaaagaaatgatgttGTTCATA-----TTCTGAA
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL109592                105819 68 -    117391 TACTCCTTTCAAGT--------------CTCCTTTCAGCAAACTGTCCAAAGGAAAAGAAATTATGTTGTTCATA-----TTTTGAA
i macEug2.GL109592             C 0 C 0
s ornAna1.Contig30778               4638 68 +      7217 TACACCTTTCAGGT--------------CTCCTTTCAGCAGACTGTCCAAAGGAAAAGTGATTATGTTGTTCATG-----TTCTGAA
i ornAna1.Contig30778          C 0 C 0
s allMis1.JH737735                 40946 80 -    338457 TACTCATTTCAAGCTGTCTTTACACTAGCTTCATTTAACAAACTGTCCTAATAGAAA--CACATTATAACTGGAA-----ACTTTCA
i allMis1.JH737735             n 0 C 0
s cheMyd1.KB479743               1988897 68 +   4979691 TACTCCTTTTAGGT--------------CTCCCTTAAGTAAACTGTCCAATGGGAAAGTGATTATGTTGTTCATA-----TTCTGAa
i cheMyd1.KB479743             C 0 C 0
s chrPic2.chrUn_KK088237v1       5684284 68 -  22294289 AACTCCTTTCAAGT--------------CTCCTTTTAAGAGAGAATCCAAAGTGAAGATAACATTGTGGCTTAAG-----CCCTGGA
i chrPic2.chrUn_KK088237v1     C 0 C 0
s xenTro7.KB021650             130832355 68 + 150913983 ---TGTTTGTAAAA--------------AACGTATCATTATACATTTAGCAAGGAAAGAAATTACATA--TCAGAAGTGTTTCAGTA
i xenTro7.KB021650             C 0 C 0
s tetNig2.chr10                  6379305 68 +  13272281 GACGCCCTTCAGGT--------------CTCCTTTCAGCAGGCTGTCCAGAGGAAAAGTGATGATGTTGTTCATG-----TTTTGAA
i tetNig2.chr10                C 0 C 0
s fr3.HE591725                    289717 68 -    411779 GACCCCCTTCAAGT--------------CCCCCTTGAGCAGACTCTCCAGAGGGAAGCTGATGGTGTTGCTCATG-----TTCTGCA
i fr3.HE591725                 C 0 C 0
s takFla1.KE120649                 20324 68 -    165821 GACCCCCTTCAAGT--------------CGCCCTTGAGCAGACTGTCCAGAGGGAAGCTGATGGTGTTGCTCATG-----TTCTGCA
i takFla1.KE120649             C 0 C 0
s xipMac1.JH556722                325024 68 -   2306555 GACGCCCTTCAGGT--------------CTCCTTTCAGCAGGCTGTCCAGGGGGAAGGTGATGATGTTGTTCATG-----TTCTGGA
i xipMac1.JH556722             C 0 C 0
s gasAcu1.chrXV                  6165397 68 +  16198764 GACTCCCTTCAGGT--------------CTCCTTTCAGCAGGCTGTCCAGGGGAAAGGTGATGATGTTGTTCATG-----TTTTGGA
i gasAcu1.chrXV                C 0 I 1834
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280499  0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr3                  91313763  0 + 100405168 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr2                 147424537  0 + 156412533 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=22250.000000
s hg38.chr8_KI270814v1_alt         87315 1 +    141812 T
s ponAbe2.chr8                  59056854 1 + 153482349 T
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48135509 1 + 100215132 T
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99342745 1 + 108792865 T
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24008900 1 +  27210278 T
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21191296 1 -  23169006 T
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19213851 1 -  22931326 T
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2807766 1 -   6207710 T
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10843364 1 +  17242564 T
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84037513 1 +  91571448 T
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6811037 1 -  14545593 T
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134108189 1 + 140925898 T
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57841064 1 -  64289059 T
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13613400 1 -  19722643 T
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3036347 1 +   4816872 T
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19413832 1 -  23789964 T
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27621179 1 -  46401353 T
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9968610 1 +  24341844 T
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1035136 1 -   2788317 T
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530533387 1 + 748055161 T
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    525038 1 +   3395230 T
i sarHar1.chr1_GL834688_random C 0 C 0
s macEug2.GL109592                105887 1 -    117391 T
i macEug2.GL109592             C 0 C 0
s ornAna1.Contig30778               4706 1 +      7217 T
i ornAna1.Contig30778          C 0 C 0
s cheMyd1.KB479743               1988965 1 +   4979691 t
i cheMyd1.KB479743             C 0 C 0
s chrPic2.chrUn_KK088237v1       5684352 1 -  22294289 g
i chrPic2.chrUn_KK088237v1     C 0 C 0
s xenTro7.KB021650             130832423 1 + 150913983 T
i xenTro7.KB021650             C 0 C 0
s tetNig2.chr10                  6379373 1 +  13272281 A
i tetNig2.chr10                C 0 I 1
s fr3.HE591725                    289785 1 -    411779 T
i fr3.HE591725                 C 0 n 0
s takFla1.KE120649                 20392 1 -    165821 T
i takFla1.KE120649             C 0 n 0
s xipMac1.JH556722                325092 1 -   2306555 A
i xipMac1.JH556722             C 0 I 1
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221189              55280499 0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH737735                 41026 0 -    338457 C
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr3                  91313763 0 + 100405168 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr2                 147424537 0 + 156412533 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=57800.000000
s hg38.chr8_KI270814v1_alt         87316  9 +    141812 TG-----AAAAGAA
s ponAbe2.chr8                  59056855  9 + 153482349 TG-----AAAAAAA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48135510  9 + 100215132 TG-----AAAAAAA
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99342746  9 + 108792865 CT-----GAAAAAC
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24008901  9 +  27210278 CT-----AAAAAAC
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21191297  9 -  23169006 CT-----GAAAAAC
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19213852  9 -  22931326 CT-----AAAAGAC
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2807767  9 -   6207710 CT-----AAAAGAC
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10843365  9 +  17242564 CT-----aaaaaac
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84037514  9 +  91571448 CT-----Aaaaaac
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6811038  9 -  14545593 CT-----AAAAAAC
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134108190  9 + 140925898 CT-----AAAAAGC
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57841065  9 -  64289059 CT-----AAAAAGC
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13613401  9 -  19722643 CT-----AAAAAGC
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3036348  8 +   4816872 CT-----AAAAAG-
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19413833  9 -  23789964 CT-----AAAAAAC
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27621180  9 -  46401353 CT-----AAAACAC
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9968611 10 +  24341844 CT----AAAAAAAC
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1035137  9 -   2788317 CT-----AAAAAAC
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530533388  9 + 748055161 CT-----AAAAAAC
i monDom5.chr1                 C 0 I 14
s sarHar1.chr1_GL834688_random    525039  9 +   3395230 CT-----AAAAAAC
i sarHar1.chr1_GL834688_random C 0 I 13
s macEug2.GL109592                105888  9 -    117391 CT-----AAAAAAA
i macEug2.GL109592             C 0 n 0
s ornAna1.Contig30778               4707 13 +      7217 CTGTTAAAAAAAA-
i ornAna1.Contig30778          C 0 C 0
s cheMyd1.KB479743               1988966 12 +   4979691 ct--gtaataaaaa
i cheMyd1.KB479743             C 0 C 0
s chrPic2.chrUn_KK088237v1       5684353  9 -  22294289 ct-----aagaaaa
i chrPic2.chrUn_KK088237v1     C 0 C 0
s xenTro7.KB021650             130832424  3 + 150913983 AT-----A------
i xenTro7.KB021650             C 0 C 0
s tetNig2.chr10                  6379375  8 +  13272281 -----TGGAGGAA-
i tetNig2.chr10                I 1 C 0
s xipMac1.JH556722                325094  8 -   2306555 -----TGGAGGAA-
i xipMac1.JH556722             I 1 N 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120649                 20393  0 -    165821 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280499  0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH737735                 41026  0 -    338457 C
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr3                  91313763  0 + 100405168 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr2                 147424537  0 + 156412533 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-190537.000000
s hg38.chr8_KI270814v1_alt         87325  2 +    141812 T-----------------T
s ponAbe2.chr8                  59056864  3 + 153482349 T----------------AT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48135519  3 + 100215132 T----------------AT
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99342755 15 + 108792865 AG--AAACAAA--AAGGAG
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24008910 15 +  27210278 AA--AAACAAA--AAGGAG
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21191306 11 -  23169006 AA--AAGCAGA------AT
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19213861 17 -  22931326 AA--AAACAGAAAAAAGAA
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2807776 17 -   6207710 AA--AAACAGAAAAAAGAA
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10843374 16 +  17242564 aa--aaacagaaaaaa-aa
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84037523 10 +  91571448 aa--aaacaaaa-------
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6811047  9 -  14545593 AG--AAACAAA--------
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134108199 11 + 140925898 AAGCACACAAA--------
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57841074 11 -  64289059 AAACAAACAAA--------
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13613410 11 -  19722643 AAACAAACAAA--------
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3036356  8 +   4816872 ---CAAACAAA--------
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19413842 13 -  23789964 AA--AAACAGAGA----AT
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27621189 15 -  46401353 AA--ACAC-AA-AAAGAAT
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9968621 16 +  24341844 AA--ACACAAA-AAAGCAT
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1035146 16 -   2788317 AA--AAACAAA-AAAGGAT
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530533411  2 + 748055161 -----------------TT
i monDom5.chr1                 I 14 C 0
s sarHar1.chr1_GL834688_random    525061  2 +   3395230 -----------------TT
i sarHar1.chr1_GL834688_random I 13 C 0
s cheMyd1.KB479743               1988978  2 +   4979691 -----------------tt
i cheMyd1.KB479743             C 0 C 0
s chrPic2.chrUn_KK088237v1       5684362  2 -  22294289 -----------------tg
i chrPic2.chrUn_KK088237v1     C 0 C 0
s xenTro7.KB021650             130832427  1 + 150913983 ------------------T
i xenTro7.KB021650             C 0 C 0
s tetNig2.chr10                  6379383  2 +  13272281 -----------------GT
i tetNig2.chr10                C 0 n 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e ornAna1.Contig30778               4720  0 +      7217 C
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120649                 20393  0 -    165821 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280499  0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH737735                 41026  0 -    338457 C
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr3                  91313763  0 + 100405168 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr2                 147424537  0 + 156412533 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=10879.000000
s hg38.chr8_KI270814v1_alt         87327 1 +    141812 A-
s ponAbe2.chr8                  59056867 1 + 153482349 A-
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48135522 1 + 100215132 A-
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99342770 1 + 108792865 A-
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24008925 1 +  27210278 A-
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21191317 1 -  23169006 A-
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19213878 1 -  22931326 A-
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2807793 1 -   6207710 A-
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10843390 1 +  17242564 a-
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84037533 1 +  91571448 a-
i equCab2.chr15                C 0 C 0
s felCat8.chrA3                134108210 1 + 140925898 A-
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57841085 1 -  64289059 A-
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13613421 1 -  19722643 A-
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3036364 1 +   4816872 A-
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19413855 1 -  23789964 A-
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27621204 1 -  46401353 G-
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9968637 1 +  24341844 A-
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1035162 1 -   2788317 A-
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530533413 1 + 748055161 A-
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    525063 1 +   3395230 A-
i sarHar1.chr1_GL834688_random C 0 C 0
s cheMyd1.KB479743               1988980 1 +   4979691 a-
i cheMyd1.KB479743             C 0 I 4
s chrPic2.chrUn_KK088237v1       5684364 1 -  22294289 a-
i chrPic2.chrUn_KK088237v1     C 0 n 0
s xenTro7.KB021650             130832428 2 + 150913983 AA
i xenTro7.KB021650             C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e ornAna1.Contig30778               4720 0 +      7217 C
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120649                 20393 0 -    165821 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221189              55280499 0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH737735                 41026 0 -    338457 C
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr3                  91313763 0 + 100405168 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr2                 147424537 0 + 156412533 I
e cerSim1.JH767782               6811056 0 -  14545593 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=99191.000000
s hg38.chr8_KI270814v1_alt         87328 11 +    141812 TTATTATTTGG
s ponAbe2.chr8                  59056868 11 + 153482349 TTATTATTTGA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48135523 11 + 100215132 TTATTATTTGA
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99342771 11 + 108792865 TTCTTATTCAG
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24008926 11 +  27210278 TTCTTATTCAG
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21191318 11 -  23169006 TTCTCATTCAA
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19213879 11 -  22931326 TTCTTACTCAA
i vicPac2.KB632437             C 0 I 3
s camFer1.KB017763               2807794 11 -   6207710 TTCTTACTCAA
i camFer1.KB017763             C 0 I 3
s orcOrc1.KB316907              10843391 11 +  17242564 TCCTTATTCCA
i orcOrc1.KB316907             C 0 I 3
s equCab2.chr15                 84037534 11 +  91571448 caaaTATTCAA
i equCab2.chr15                C 0 I 3
s cerSim1.JH767782               6811056  6 -  14545593 -----ATTCAA
i cerSim1.JH767782             C 0 I 3
s felCat8.chrA3                134108211 11 + 140925898 TTCTTATTCGA
i felCat8.chrA3                C 0 I 230
s canFam3.chr17                 57841086 11 -  64289059 TTCTCATTCGA
i canFam3.chr17                C 0 I 3
s musFur1.GL896914              13613422 11 -  19722643 TTCTTATTTGA
i musFur1.GL896914             C 0 I 3
s odoRosDiv1.KB229025            3036365 11 +   4816872 TTCTTATTCGA
i odoRosDiv1.KB229025          C 0 I 3
s pteAle1.KB030580              19413856 11 -  23789964 TTCTCATTCGA
i pteAle1.KB030580             C 0 I 3
s loxAfr3.scaffold_20           27621205 11 -  46401353 TTCTTATGCAA
i loxAfr3.scaffold_20          C 0 I 1
s triMan1.JH594629               9968638 11 +  24341844 TTTTCATTCAA
i triMan1.JH594629             C 0 I 1
s dasNov3.JH567436               1035163 11 -   2788317 TTCTTATTCAA
i dasNov3.JH567436             C 0 I 1
s monDom5.chr1                 530533414 11 + 748055161 ATCTTATTTAC
i monDom5.chr1                 C 0 I 1
s sarHar1.chr1_GL834688_random    525064 11 +   3395230 ATTTCATTCAC
i sarHar1.chr1_GL834688_random C 0 I 1
s ornAna1.Contig30778               4720 11 +      7217 AAGTTATTGAA
i ornAna1.Contig30778          C 0 I 10
s allMis1.JH737735                 41026 11 -    338457 TGTACATTTGT
i allMis1.JH737735             C 0 I 1
s cheMyd1.KB479743               1988985 11 +   4979691 tacactTTAGT
i cheMyd1.KB479743             I 4 I 3
s xenTro7.KB021650             130832430 11 + 150913983 TAATTATGTGT
i xenTro7.KB021650             C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120649                 20393  0 -    165821 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280499  0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr3                  91313763  0 + 100405168 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e chrPic2.chrUn_KK088237v1       5684365  0 -  22294289 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr2                 147424537  0 + 156412533 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-741.000000
s hg38.chr8_KI270814v1_alt         87339 8 +    141812 CCTATTTG-
s ponAbe2.chr8                  59056879 6 + 153482349 C--ATTTG-
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48135534 8 + 100215132 CTTATTTG-
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99342782 8 + 108792865 CTTCCTTG-
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24008937 8 +  27210278 CTTCCTTG-
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21191329 8 -  23169006 CCTCTTTG-
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19213893 5 -  22931326 --CCTTT--
i vicPac2.KB632437             I 3 C 0
s camFer1.KB017763               2807808 5 -   6207710 --CCTTT--
i camFer1.KB017763             I 3 C 0
s orcOrc1.KB316907              10843405 5 +  17242564 --CCTTT--
i orcOrc1.KB316907             I 3 C 0
s equCab2.chr15                 84037548 5 +  91571448 --CCTTT--
i equCab2.chr15                I 3 C 0
s cerSim1.JH767782               6811065 5 -  14545593 --CCTTT--
i cerSim1.JH767782             I 3 C 0
s felCat8.chrA3                134108452 5 + 140925898 --CCTTT--
i felCat8.chrA3                I 230 C 0
s canFam3.chr17                 57841100 5 -  64289059 --CCTTT--
i canFam3.chr17                I 3 C 0
s musFur1.GL896914              13613436 5 -  19722643 --CCTTT--
i musFur1.GL896914             I 3 C 0
s odoRosDiv1.KB229025            3036379 5 +   4816872 --CCTTT--
i odoRosDiv1.KB229025          I 3 I 208
s pteAle1.KB030580              19413870 5 -  23789964 --CCTTT--
i pteAle1.KB030580             I 3 C 0
s loxAfr3.scaffold_20           27621217 7 -  46401353 TTCCTTT--
i loxAfr3.scaffold_20          I 1 C 0
s triMan1.JH594629               9968650 7 +  24341844 TTCCTTT--
i triMan1.JH594629             I 1 C 0
s dasNov3.JH567436               1035175 7 -   2788317 TTCCTTT--
i dasNov3.JH567436             I 1 C 0
s monDom5.chr1                 530533426 7 + 748055161 GTCCTTT--
i monDom5.chr1                 I 1 C 0
s sarHar1.chr1_GL834688_random    525076 7 +   3395230 GTCcttt--
i sarHar1.chr1_GL834688_random I 1 C 0
s ornAna1.Contig30778               4741 7 +      7217 AACATTG--
i ornAna1.Contig30778          I 10 C 0
s allMis1.JH737735                 41038 7 -    338457 AGACTTT--
i allMis1.JH737735             I 1 C 0
s cheMyd1.KB479743               1988999 7 +   4979691 AGATTTT--
i cheMyd1.KB479743             I 3 C 0
s xenTro7.KB021650             130832441 8 + 150913983 TTTGTTT-G
i xenTro7.KB021650             C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120649                 20393 0 -    165821 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221189              55280499 0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr3                  91313763 0 + 100405168 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e chrPic2.chrUn_KK088237v1       5684365 0 -  22294289 I
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr2                 147424537 0 + 156412533 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=36591.000000
s hg38.chr8_KI270814v1_alt         87347 10 +    141812 TT------AATCTACA
s ponAbe2.chr8                  59056885 10 + 153482349 TT------AATCTACA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48135542 10 + 100215132 TT------AATCTACA
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99342790 10 + 108792865 TG------AATCTAAA
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24008945 10 +  27210278 TG------AATCTAAA
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21191337 10 -  23169006 TT------AATGGGAG
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19213898 10 -  22931326 GT------AATCTCAA
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2807813 10 -   6207710 TT------AATCTCAA
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10843410 10 +  17242564 TT------AATCTAAA
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84037553 10 +  91571448 TT------AATCTAAA
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6811070 10 -  14545593 TT------AATCTAAA
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134108457 10 + 140925898 TT------AATCTGAA
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57841105 10 -  64289059 TT------AATCTCCA
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13613441 10 -  19722643 TT------AATCTGAA
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3036592 10 +   4816872 TT------AATCTGAA
i odoRosDiv1.KB229025          I 208 C 0
s pteAle1.KB030580              19413875 10 -  23789964 TT------AAGCTAAA
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27621224  5 -  46401353 TT------AAC-----
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9968657 10 +  24341844 TT------AACCTCAA
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1035182 10 -   2788317 TT------AATATAAA
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530533433  4 + 748055161 ------------CCAA
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    525083  4 +   3395230 ------------tcaa
i sarHar1.chr1_GL834688_random C 0 C 0
s ornAna1.Contig30778               4748 10 +      7217 TT------AATCCTAT
i ornAna1.Contig30778          C 0 C 0
s allMis1.JH737735                 41045  6 -    338457 -C------ACTTT---
i allMis1.JH737735             C 0 C 0
s cheMyd1.KB479743               1989006 15 +   4979691 -TTAACAGACTATAAC
i cheMyd1.KB479743             C 0 C 0
s xenTro7.KB021650             130832449 10 + 150913983 TT------TCTCTACA
i xenTro7.KB021650             C 0 N 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120649                 20393  0 -    165821 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280499  0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr3                  91313763  0 + 100405168 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e chrPic2.chrUn_KK088237v1       5684365  0 -  22294289 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr2                 147424537  0 + 156412533 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=52145.000000
s hg38.chr8_KI270814v1_alt         87357  9 +    141812 GTAAGG--A--CA
s ponAbe2.chr8                  59056895  9 + 153482349 GTAAGG--A--CA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48135552  9 + 100215132 GTAAGG--A--CA
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99342800  9 + 108792865 GTAAGG--A--CA
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24008955  9 +  27210278 GTAAGG--A--CA
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21191347  9 -  23169006 GGAAGG--A--CA
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19213908  9 -  22931326 GTGAGG--A--TA
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2807823  9 -   6207710 GTGAGG--A--TA
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10843420  9 +  17242564 GTAAGG--A--CA
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84037563 11 +  91571448 GTGAGGACA--CA
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6811080 11 -  14545593 GTAAGGACA--CA
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134108467  9 + 140925898 GTAAGA--A--CA
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57841115  9 -  64289059 GTAAGG--A--CA
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13613451  9 -  19722643 GAAAGG--A--CA
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3036602  9 +   4816872 GTAAGG--A--CA
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19413885  9 -  23789964 GGTAGG--A--CA
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27621229  9 -  46401353 GTAAGG--A--TA
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9968667  9 +  24341844 GTAAGG--A--CA
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1035192  9 -   2788317 ATAAGA--A--TA
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530533437  7 + 748055161 GGAAGA--A----
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    525087 11 +   3395230 agaaga--aagga
i sarHar1.chr1_GL834688_random C 0 C 0
s ornAna1.Contig30778               4758  9 +      7217 GCTACA--T--TT
i ornAna1.Contig30778          C 0 C 0
s cheMyd1.KB479743               1989021  4 +   4979691 GAAA---------
i cheMyd1.KB479743             C 0 n 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120649                 20393  0 -    165821 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280499  0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH737735                 41051  0 -    338457 C
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr3                  91313763  0 + 100405168 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e chrPic2.chrUn_KK088237v1       5684365  0 -  22294289 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr2                 147424537  0 + 156412533 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=338109.000000
s hg38.chr8_KI270814v1_alt         87366 51 +    141812 GCAAGGATGTTAGAGAGAA-----CAATTGATAATG-----ATTAACCTCCA---CTT-AAAATC
s ponAbe2.chr8                  59056904 47 + 153482349 GCAAGGATGTT----AGAA-----CAACTGATAATG-----ATTAACTTCCA---CTT-AAAATC
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48135561 51 + 100215132 GCAAGGATGTTAGAGAGAA-----CAATTGATAATG-----ATTAACCTTCA---CTT-AAAATC
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99342809 47 + 108792865 GCAAGGATGTT----AGAA-----CATTTGATCATG-----ATTTACCTCCA---CCT-AAAACC
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24008964 47 +  27210278 GCAAGGATGTT----AGAA-----CATTTCATCATG-----ATTTACCTCCA---CCT-AAAACC
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21191356 50 -  23169006 GCAAAGATGCTGGAAAGAA-----CATTTGGTAACA-----ATTAAC-TCCA---CTT-AAAACC
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19213917 49 -  22931326 GCAAGGAGATTAG--AGAA-----CACTTGGTGATA-----ATTAAACTTCC---CTT-AAAAGC
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2807832 49 -   6207710 GCAAGGAGATTAG--AGAA-----CACTTGGTGATA-----ATTAAACTTCC---CTT-AAAAGC
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10843429 48 +  17242564 GCAAGAAGGTTAG--AGAA-----CACACGGTGATA-----ATTAAACTTCC---C-T-AAAACC
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84037574 49 +  91571448 GTAAGGAGGTTAG--AGAA-----CACTTGGTAATA-----ATTAACTTGCA---CTT-AAAAGC
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6811091 49 -  14545593 GCAAGGACGTTAG--AGAA-----CACCTGGTAATA-----ATTAACTTGCA---CTT-AAAACC
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134108476 48 + 140925898 GCAG-GATGTTCA--AGAA-----CACCTGGTAGTA-----ATTAACCTTCA---CCA-AAAACC
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57841124 48 -  64289059 GCAA-GATGTTAG--AGAA-----CAACTGGTATCA-----ATTAACCTTCC---CTA-AAAACC
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13613460 48 -  19722643 GCAA-GACGCTAG--AGAA-----CATCTGGTAATA-----TTCAACCTTCC---CTG-AAAACC
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3036611 48 +   4816872 GCAA-GATGTTAG--AGAA-----CACCTGGTAATA-----ATTAACCTCCC---CTG-AAAACC
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19413894 49 -  23789964 GCAAGGATGTTGG--AGAC-----CATTAGGTGATA-----ATTAACCTTCA---CTT-CAAACC
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27621238 51 -  46401353 GCAAGGATGTTCGAGAGAA-----CACTGGATAATA-----ATTAACCTTCA---CTT-AAAACG
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9968676 51 +  24341844 ACAAGGATGTTAGAGAGAA-----CATTCGATAATA-----ATTAACCTTCA---CTT-AAAACG
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1035201 47 -   2788317 GCAAAGATATT----AGAA-----CGTTTGGCAGTC-----ATTAACCTTCA---CTT-AAAACC
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530533444 56 + 748055161 -AAAAGAGAATA---TAAG-----CATCACACAGTATATATGTCACCTTCTAGGGTTTAAAGATT
i monDom5.chr1                 C 0 I 35
s sarHar1.chr1_GL834688_random    525098 56 +   3395230 gaaaaaataata---aaaa-----tatcacatAATACATAAATCAACATCCAGGGCTT-AAGatc
i sarHar1.chr1_GL834688_random C 0 I 8404
s ornAna1.Contig30778               4767 38 +      7217 GGAAGAATTTAAC--AGAG-----GACACAGTTCTA-------------------CTT-CCAATC
i ornAna1.Contig30778          C 0 I 13
s allMis1.JH737735                 41051 39 -    338457 -TAGAGATATTTG--AGAAAGATCTAGTTGCTGATA-----TTTAAA------------------
i allMis1.JH737735             C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120649                 20393  0 -    165821 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280499  0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e melGal1.chr3                  91313763  0 + 100405168 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1989025  0 +   4979691 I
e chrPic2.chrUn_KK088237v1       5684365  0 -  22294289 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr2                 147424537  0 + 156412533 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=48484.000000
s hg38.chr8_KI270814v1_alt         87417 24 +    141812 ----TGGCCATCACATGT---ACAATTGCCT
s ponAbe2.chr8                  59056951 24 + 153482349 ----TGGCCGTCACATGT---ACGATTGCCT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48135612 24 + 100215132 ----TGGCCGTCACATGT---ACAATTGCCT
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99342856 23 + 108792865 ----CAGCCGGTACACGT---ACTG-TGCCT
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24009011 23 +  27210278 ----CAGCCGGTACACGT---ACTG-TGCCT
i saiBol1.JH378126             C 0 I 4
s otoGar3.GL873541              21191406 24 -  23169006 ----TGGCCGGTGCAGGT---ATGATCACCT
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19213966 23 -  22931326 ----CGACCAGCCCAAGT---ATGACAG-CT
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2807881 23 -   6207710 ----CGACCAGCCCAAGT---ATGACAG-CT
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10843477 24 +  17242564 ----TGACCAGCACAAGC---ATGACAGCCT
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84037623 24 +  91571448 ----TGACCAGCCCAAGT---CTGACAGCCT
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6811140 24 -  14545593 ----TGACCAGCACAAGT---ATGACAGCCT
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134108524 24 + 140925898 ----TGGCCGGCACGTGC---ATGCCCGCTT
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57841172 24 -  64289059 ----TGGCCTGCATGAGC---ATGTCAGCCT
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13613508 24 -  19722643 ----TGGCCGGTGCGAGT---GCCACAGCCT
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3036659 24 +   4816872 ----TGACCAGCACGAGC---AGGACAGCCT
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19413943 27 -  23789964 ----TGACTAGCACAGGTATGATGATGGCCT
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27621289 24 -  46401353 ----TAACCAGCACAAGT---ATGGCAGCCT
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9968727 23 +  24341844 ----TGACTGGCACAAGT---ATGTCTGCC-
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1035248  7 -   2788317 ----TGACCAG--------------------
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530533535 21 + 748055161 ----TGATTGATGATAAA---ATGGCCA---
i monDom5.chr1                 I 35 C 0
s ornAna1.Contig30778               4818 19 +      7217 ----TGACCACAAACAAT---TTATC-----
i ornAna1.Contig30778          I 13 C 0
s allMis1.JH737735                 41090 24 -    338457 ACATGAAAAATTTCAAAC---AGAGCT----
i allMis1.JH737735             C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120649                 20393  0 -    165821 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280499  0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e sarHar1.chr1_GL834688_random    525154 8404 +   3395230 I
e melGal1.chr3                  91313763  0 + 100405168 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1989025  0 +   4979691 I
e chrPic2.chrUn_KK088237v1       5684365  0 -  22294289 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr2                 147424537  0 + 156412533 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=119714.000000
s hg38.chr8_KI270814v1_alt         87441 29 +    141812 TGTTCAGCCTT----ACA-----TTCTTT----CTAATGATT
s ponAbe2.chr8                  59056975 30 + 153482349 TGTTTAGCCTT---AACA-----TTCTTT----CTAATGATT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48135636 29 + 100215132 TGTTCAGCCTT----ACA-----TTTTTT----CTAATGATT
i nomLeu3.chr16                C 0 C 0
s saiBol1.JH378126              24009038 33 +  27210278 CATTCATACTTTCATACT-----TTCTTT----GTAATAATT
i saiBol1.JH378126             I 4 C 0
s otoGar3.GL873541              21191430 29 -  23169006 TATTCAGTCTT----GAG-----TTCTTT----GTAATGATT
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19213989 29 -  22931326 CATTCATTCCC----ACA-----TTCTCT----GTCATGATT
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2807904 29 -   6207710 CATTCATTCCC----AGA-----TTCTCT----GTCATGATT
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10843501 33 +  17242564 TATTCATTCTT----ACA-----TTCTCTGTAAGTAACGATT
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84037647 29 +  91571448 TATTCTTTCTG----ACA-----TTCTTT----GTAATGATT
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6811164 29 -  14545593 TATTCTTTCTG----ACG-----TTCTTT----GCAATGATT
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134108548 29 + 140925898 TACCCATTCCT----ACG-----TTCTTT----GTGGCGATT
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57841196 29 -  64289059 TCTTCATTCCG----AAG-----CTCTTC----ATGGTGGCT
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13613532 34 -  19722643 TATTTATTCCT----ACGCTCCACTCCTC----GTGGTGGAC
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3036683 29 +   4816872 TATTCATTTCT----ACG-----CTCCTC----ATGGTGGTC
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19413970 33 -  23789964 TATCCATTCTT----ACT-TACATTCTTA----GTAAAGATT
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27621313 29 -  46401353 TATTCATTCTT----ACC-----GCCTTT----GTAATGATC
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9968750 27 +  24341844 --TTCATTCTT----ACA-----TTCTTT----GTAATGATT
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1035255 24 -   2788317 -----GCTCTT----ACA-----TCCTTT----GTAATGGTT
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530533556 29 + 748055161 CGTGAATTTTT----TAA-----CTCTTT----TTTAAGGTT
i monDom5.chr1                 C 0 I 5218
s ornAna1.Contig30778               4837 12 +      7217 TACACAGAATT----A--------------------------
i ornAna1.Contig30778          C 0 C 0
s allMis1.JH737735                 41114 29 -    338457 CAGTTAGTCAT----TCA-----TTATGT----ATGTTGTAT
i allMis1.JH737735             C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120649                 20393  0 -    165821 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280499  0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e sarHar1.chr1_GL834688_random    525154 8404 +   3395230 I
e melGal1.chr3                  91313763  0 + 100405168 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1989025  0 +   4979691 I
e chrPic2.chrUn_KK088237v1       5684365  0 -  22294289 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e calJac3.chr14                 99342879  0 + 108792865 C
e melUnd1.JH556589               7680049 6397 -   7952740 T
e taeGut2.chr2                 147424537  0 + 156412533 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=43569.000000
s hg38.chr8_KI270814v1_alt         87470 6 +    141812 TGGTCT
s ponAbe2.chr8                  59057005 6 + 153482349 TGATCT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48135665 6 + 100215132 TGATCT
i nomLeu3.chr16                C 0 C 0
s saiBol1.JH378126              24009071 6 +  27210278 TAATCT
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21191459 6 -  23169006 TGATCT
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19214018 6 -  22931326 TCACCT
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2807933 6 -   6207710 TCACCT
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10843534 6 +  17242564 TTACCT
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84037676 6 +  91571448 TTATCT
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6811193 6 -  14545593 TTATCT
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134108577 6 + 140925898 TCATTT
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57841225 6 -  64289059 TTATCT
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13613566 6 -  19722643 TCACCT
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3036712 6 +   4816872 ATACTT
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19414003 6 -  23789964 TCATCT
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27621342 6 -  46401353 TTCTCT
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9968777 6 +  24341844 TTATCT
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1035279 6 -   2788317 TTATCT
i dasNov3.JH567436             C 0 C 0
s ornAna1.Contig30778               4849 2 +      7217 ----CC
i ornAna1.Contig30778          C 0 C 0
s allMis1.JH737735                 41143 5 -    338457 -TGCTT
i allMis1.JH737735             C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120649                 20393 0 -    165821 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221189              55280499 0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e sarHar1.chr1_GL834688_random    525154 8404 +   3395230 I
e melGal1.chr3                  91313763 0 + 100405168 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1989025 0 +   4979691 I
e chrPic2.chrUn_KK088237v1       5684365 0 -  22294289 I
e pelSin1.JH211373               2650239 0 -   4257854 I
e calJac3.chr14                 99342879 0 + 108792865 C
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530533585 5218 + 748055161 I
e taeGut2.chr2                 147424537 0 + 156412533 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=117790.000000
s hg38.chr8_KI270814v1_alt         87476 17 +    141812 TACAAGACAAATATAGG
s ponAbe2.chr8                  59057011 17 + 153482349 TACAAGACAAATATAGA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48135671 17 + 100215132 TACAAGACAAATATAGA
i nomLeu3.chr16                C 0 C 0
s saiBol1.JH378126              24009077 16 +  27210278 TACAA-ATGAACACAGA
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21191465 16 -  23169006 TACAA-ATGAATATATA
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19214024 16 -  22931326 CACAA-ATGAAGATACA
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2807939 16 -   6207710 CACAA-ATGAAGATACA
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10843540 16 +  17242564 TACAA-ATGAATATATA
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84037682 16 +  91571448 CACAA-ATGAACATACA
i equCab2.chr15                C 0 I 1
s cerSim1.JH767782               6811199 16 -  14545593 TACAA-ATGAACATATA
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134108583 16 + 140925898 TACAA-ATAACACTGTA
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57841231 16 -  64289059 TGCAA-ACAGAAACATA
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13613572 16 -  19722643 TGCAA-ATAAAAACACA
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3036718 16 +   4816872 TGCAA-ATAAAAACATA
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19414009 16 -  23789964 TACAA-ATGAATACATA
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27621348 16 -  46401353 TACAA-ATAAATACAGA
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9968783 16 +  24341844 TACAG-ATGAATATAGA
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1035285 16 -   2788317 TACAA-ATGAATATATA
i dasNov3.JH567436             C 0 C 0
s ornAna1.Contig30778               4851 15 +      7217 GACAG--CAAATACAAA
i ornAna1.Contig30778          C 0 C 0
s allMis1.JH737735                 41148 16 -    338457 TACCC-AGAAACTTACA
i allMis1.JH737735             C 0 n 0
s xenTro7.KB021654              31012650 16 - 122929044 tacaa-ggtaacaaccg
i xenTro7.KB021654             N 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120649                 20393  0 -    165821 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280499  0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e sarHar1.chr1_GL834688_random    525154 8404 +   3395230 I
e melGal1.chr3                  91313763  0 + 100405168 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1989025  0 +   4979691 I
e chrPic2.chrUn_KK088237v1       5684365  0 -  22294289 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e calJac3.chr14                 99342879  0 + 108792865 C
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530533585 5218 + 748055161 I
e taeGut2.chr2                 147424537  0 + 156412533 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=59827.000000
s hg38.chr8_KI270814v1_alt         87493 30 +    141812 T--CTAATG----------AAAAGTCTAGATC------TGTA--TA-TTTT
s ponAbe2.chr8                  59057028 30 + 153482349 T--CTAATG----------AAAAGTCTAGATC------TGTA--TA-TTTT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48135688 30 + 100215132 T--CTAATG----------AAAAGTCTATATC------TGTA--TA-TTTT
i nomLeu3.chr16                C 0 C 0
s saiBol1.JH378126              24009093 30 +  27210278 A--CTAATG----------AAAAGTCTAGGTC------TGTA--TA-TTTT
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21191481 31 -  23169006 A--CCAATG----------AAAAGACTAGATC------TGTA--CATTTTT
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19214040 20 -  22931326 A--CTAAGG----------AAAA----------------GTC--TG-TATT
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2807955 20 -   6207710 A--CTAATG----------AAAA----------------GTC--TA-TATT
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10843556 30 +  17242564 A--CTAATG----------AAAAGTCTACATC------TGTC--TA-TATT
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84037699 30 +  91571448 A--CTAGTG----------AAAAGTCTACATG------TGTC--TA-TTTT
i equCab2.chr15                I 1 C 0
s cerSim1.JH767782               6811215 30 -  14545593 A--CTAGCG----------AAAAGTCTACATG------CGTC--CA-TTTT
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134108599 13 + 140925898 A--C-----------------AAGTCT------------------A-TTTT
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57841247 29 -  64289059 A--CTCATA----------G-AAGTCTGTAAC------CGTC--TA-TTCT
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13613588 30 -  19722643 A--CTCACA----------GAAAGTCTGTGTC------TCTC--AA-CTCT
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3036734 30 +   4816872 A--CTCACA----------GAAAGTCTGTATT------TGTC--TA-TTCT
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19414025 27 -  23789964 A--CTAGTG----------ACAAATCTACATG------T-----TA-TTTT
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27621364 32 -  46401353 A--CTAATG----------AAAAATGTAGATC------TGCACATA-TTTT
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9968799 32 +  24341844 A--CTAATG----------AAAAATCTAGATC------TGTATCTA-TTTT
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1035301 40 -   2788317 A--TATATATATAAGAAATGAAAATCCAGAGC------TGCA--TA-TTTT
i dasNov3.JH567436             C 0 C 0
s ornAna1.Contig30778               4866 32 +      7217 AACCTGATT----------AAACACGTGGGTC------ATTA--GA-TTTT
i ornAna1.Contig30778          C 0 n 0
s xenTro7.KB021654              31012666 34 - 122929044 ----taata----------aaatggcaagctcaaagaacaat--ca-tttt
i xenTro7.KB021654             C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120649                 20393  0 -    165821 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280499  0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH737735                 41164  0 -    338457 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e sarHar1.chr1_GL834688_random    525154 8404 +   3395230 I
e melGal1.chr3                  91313763  0 + 100405168 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1989025  0 +   4979691 I
e chrPic2.chrUn_KK088237v1       5684365  0 -  22294289 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e calJac3.chr14                 99342879  0 + 108792865 C
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530533585 5218 + 748055161 I
e taeGut2.chr2                 147424537  0 + 156412533 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=172675.000000
s hg38.chr8_KI270814v1_alt         87523 51 +    141812 TCAC---AGTAATGAT---CTTAT------------------A---TTGTTACAC--------TATGAAGATTGC-GAAAAGACAAC
s ponAbe2.chr8                  59057058 51 + 153482349 TCAC---AGTAATGAT---CTTAT------------------A---TTGTTACAT--------TATGAAGATTGT-GAAAAGACAAC
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48135718 51 + 100215132 TCAC---GGTAATGCT---CTTAT------------------A---TTGTTACAC--------TATGAAGACTGC-GAAAAGACAAC
i nomLeu3.chr16                C 0 C 0
s saiBol1.JH378126              24009123 51 +  27210278 TCAC---AGTAGCAAT---CTTAC------------------A---TTGTTATGC--------TATCAAGTTTGT-AAAAAGATAAT
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21191512 39 -  23169006 TTGC---AATAATTAT---CTCCT------------------A---TTGCCAAGT--------TATGTAGTTTG-------------
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19214060 53 -  22931326 TCACAATAATGATAAC---CTTCG------------------A---CTG-TGAGC--------TACAGAGTCTGT-GGAAACATAAT
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2807975 53 -   6207710 TCACAATAATAATAAC---CTTCG------------------A---CTG-TGAGC--------TACGGAGTCTGT-GGAAACATAAT
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10843586 54 +  17242564 TCACAACAATAATAAC---CTTCT------------------A---TTACTGGGC--------TATGAAGTCTGT-GGAAAGATAAT
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84037729 54 +  91571448 TCAGAATAATAATAAT---CTTCT------------------A---TTATTAAGT--------CATGAAGCTTGT-GAAAAGATAAT
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6811245 50 -  14545593 TC---ACAATAATAAC---TTTCT------------------A---TTATTAAGC--------TATGAAGTTTGT-G-AAAGATAAT
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134108612 48 + 140925898 TCAC------AACAGC---CTTCT------------------A---CTACTAAAG--------TATGAAGTTTGT-GGAAAGATAAT
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57841276 31 -  64289059 TCAC------------------------------------------------AAC--------TGTGAAGCTGGTTGAAAAGATCGT
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13613618 55 -  19722643 TCACAGCAGTAACAGC---CTTCT------------------A---CGATTAAAC--------TATGAAGTTTGCAAAAAAGATCAT
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3036764 51 +   4816872 TCACAACAATAACAGC---CTTCT------------------------ATTAAAC--------TATGAAGTTTGT-GAAAAGATCAT
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19414052 50 -  23789964 CCAT---AATAACAAC---CTTC-------------------A---TTGTTAAGC--------TATCAACTTTGT-GAAGAGATAAT
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27621396 66 -  46401353 CCAC------AATAAC---CTTCTATTATCAAAAAAAAAAAAA---TTATCAAGC--------CATGATGTTTGT-GAAAAGACAGT
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9968831 51 +  24341844 CTAC---AATAATAAC---CTTCT------------------A---TTATCAAGC--------CATGAAGTTTGT-GAAAAGACAAT
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1035341 54 -   2788317 TAAC---AAAAATAACCAGCTTCT------------------A---TTATCAAGC--------TATGGAGTTTGT-GAAAAGACAAT
i dasNov3.JH567436             C 0 C 0
s xenTro7.KB021654              31012700 52 - 122929044 ----------------tggctgct------------------aaagatgtaaaacgtaaataatttaaaaactat-agaaaataaat
i xenTro7.KB021654             C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e ornAna1.Contig30778               4898  0 +      7217 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120649                 20393  0 -    165821 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280499  0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH737735                 41164  0 -    338457 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e sarHar1.chr1_GL834688_random    525154 8404 +   3395230 I
e melGal1.chr3                  91313763  0 + 100405168 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1989025  0 +   4979691 I
e chrPic2.chrUn_KK088237v1       5684365  0 -  22294289 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e calJac3.chr14                 99342879  0 + 108792865 C
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530533585 5218 + 748055161 I
e taeGut2.chr2                 147424537  0 + 156412533 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=250488.000000
s hg38.chr8_KI270814v1_alt         87574 52 +    141812 CATTACGACGAAGAAA-------AAAATATTT-----C---AAAACACTCAATTACA--GAATCACAT-------T
s ponAbe2.chr8                  59057109 52 + 153482349 CATTACAATGAAGAAA-------AAAATATTT-----C---AAAACACTCAATTACA--GAATCACAT-------T
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48135769 52 + 100215132 CATTACAACGAAGAAA-------AAAATATTT-----C---AAAACACTCAATTACA--GAATCACAT-------T
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99342879 57 + 108792865 CATTCCAGTGAAG-AA-------AAAATGTAT-----C---AAAACAGTCAATGACA--GAATTACAT-CAAAAGC
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24009174 57 +  27210278 CATTACAGTAAAG-AA-------AAAATGTAT-----C---AAAACAGTCAATGACA--GAATTACAT-CAAAAGC
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21191551 47 -  23169006 ----------AAG--A-------AAAATACTT-----C---AAAACAGTCAATGATA--GAATCACGTTCAAAAGC
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19214113 48 -  22931326 CATTACAATGAAG-AC-------AAAATATTT-----C---AAAACAATCAATGA-----AGACACTT-------T
i vicPac2.KB632437             C 0 I 7
s camFer1.KB017763               2808028 48 -   6207710 CATTACAATGAAG-AC-------AAAATATTT-----C---AAAACAATCAATGA-----AGACACTT-------T
i camFer1.KB017763             C 0 I 7
s orcOrc1.KB316907              10843640 42 +  17242564 CATTACAACAAAG-AA-------A-----------------AAAAAAATCAATGACA--GAAGCACTT-------T
i orcOrc1.KB316907             C 0 I 7
s equCab2.chr15                 84037783 51 +  91571448 AATCACAATGAAG-AA-------AAAATAATT-----C---AAAACAATCAATGACA--GAACCACTT-------T
i equCab2.chr15                C 0 I 7
s cerSim1.JH767782               6811295 52 -  14545593 CATTACAATGAAGAAA-------AAAATAATT-----C---AAAACAATCAATGACC--GAACTACTT-------T
i cerSim1.JH767782             C 0 I 7
s felCat8.chrA3                134108660 51 + 140925898 TATTACAGTGAAG-AC-------AAATTATTT-----C---AAAACAACCAATGACA--GAATCACTT-------T
i felCat8.chrA3                C 0 I 5116
s canFam3.chr17                 57841307 47 -  64289059 CATTGTGATGAAG-AA-------AAATTATTT-----C---AAAATAA----TGAGA--GAACCACTC-------T
i canFam3.chr17                C 0 I 7
s musFur1.GL896914              13613673 51 -  19722643 CATTATGATGAAT-AC-------AAATTATTT-----T---GAAACCACCAATGGCA--GAACCACTT-------T
i musFur1.GL896914             C 0 I 7
s odoRosDiv1.KB229025            3036815 45 +   4816872 CATGACGAAGAAA-G-------------ATTT-----C---AAAACAATCATTGACA--GAACCACTT-------T
i odoRosDiv1.KB229025          C 0 I 7
s pteAle1.KB030580              19414102 50 -  23789964 CATTACAATAATT------------TTTTTTT-----CCCAAAAATAATCCGTGAGT--GAACCACTT-------A
i pteAle1.KB030580             C 0 I 6
s loxAfr3.scaffold_20           27621462 51 -  46401353 CATGACAACGAAG-AA-------AAAAATACT-----T---CAAACGATTAATGAAA--GAACCATTT-------T
i loxAfr3.scaffold_20          C 0 I 7
s triMan1.JH594629               9968882 51 +  24341844 CATTACAATGAAG-AA-------AAAAATATT-----G---CCAATGATTAATGAAA--GAACCACTT-------T
i triMan1.JH594629             C 0 I 7
s dasNov3.JH567436               1035395 51 -   2788317 CATTAGTGTGAAG-AA-------AAAAAATGT-----C---AACATAATCAATGACA--AAATGACTT-------T
i dasNov3.JH567436             C 0 I 5
s xenTro7.KB021654              31012752 59 - 122929044 ------gatgaag-accagttgtaaaattgctaggaat---aagacattctgtaaAAGTGAACCACAC-------C
i xenTro7.KB021654             C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e ornAna1.Contig30778               4898  0 +      7217 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120649                 20393  0 -    165821 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280499  0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH737735                 41164  0 -    338457 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e sarHar1.chr1_GL834688_random    525154 8404 +   3395230 I
e melGal1.chr3                  91313763  0 + 100405168 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1989025  0 +   4979691 I
e chrPic2.chrUn_KK088237v1       5684365  0 -  22294289 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530533585 5218 + 748055161 I
e taeGut2.chr2                 147424537  0 + 156412533 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=27872.000000
s hg38.chr8_KI270814v1_alt         87626 35 +    141812 CTGGAA-T--AA---AAGGAAACTTC---------CACTTCTGACTCTC----A
s ponAbe2.chr8                  59057161 35 + 153482349 CTGGAA-T--AA---AAGGAAACATC---------CACTTCTGACTGTC----A
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48135821 35 + 100215132 CTGGAA-T--AA---AAGGAAACATC---------CACTTCTGACTCTC----A
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99342936 40 + 108792865 TTGGAA-TAAAA---AAGGAAACCCT---------TA-TTCCAACTCTCAATAA
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24009231 37 +  27210278 CTGGAA-TAAAA---AAGGACACCCT---------CACTTCCAACTCTC----A
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21191598 35 -  23169006 CTGGAA-T--AA---ACGGAAATACC---------CACTGCCTGCCTTG----C
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19214168 35 -  22931326 CGGGAA-C--AG---GAGGCCACACC---------CGCTTCCTACTCTC----A
i vicPac2.KB632437             I 7 C 0
s camFer1.KB017763               2808083 35 -   6207710 CGGGAA-C--AG---GAGGCCACACC---------CGCTTCCTACTCTC----A
i camFer1.KB017763             I 7 C 0
s orcOrc1.KB316907              10843689 33 +  17242564 CAGGAA-C--AG---AAGCCCAAA-----------CACTTCCTATTCTC----A
i orcOrc1.KB316907             I 7 C 0
s equCab2.chr15                 84037841 42 +  91571448 CTGGAA-T--AC---AGATGCACACCCCTACTTCCTACTTCCT--ACTC----G
i equCab2.chr15                I 7 C 0
s cerSim1.JH767782               6811354 35 -  14545593 TTGGAA-T--AG---AGGTGCACACA-------CCCACTTCCT--ACTC----G
i cerSim1.JH767782             I 7 C 0
s canFam3.chr17                 57841361 38 -  64289059 -CTGGACT--AGA--ATTCACAAACA-------CACACTTCCTGCTCTC----A
i canFam3.chr17                I 7 C 0
s musFur1.GL896914              13613731 33 -  19722643 -ACGAA-T--AG---ACTCACAA--A-------CACACTTCCT-CTCTC----A
i musFur1.GL896914             I 7 C 0
s odoRosDiv1.KB229025            3036867 37 +   4816872 -CCAAA-T--AGA--ATTCACAAACA-------CACACTTCCTGCTCTC----A
i odoRosDiv1.KB229025          I 7 C 0
s pteAle1.KB030580              19414158 34 -  23789964 CCGGGA-G--AG---AAGGGGACACC----------GCTTTCTCCTCTC----A
i pteAle1.KB030580             I 6 C 0
s loxAfr3.scaffold_20           27621520 35 -  46401353 CTGGAA-T--AA---AAGAGAACATT---------CACTTCCTACTCTC----C
i loxAfr3.scaffold_20          I 7 C 0
s triMan1.JH594629               9968940 32 +  24341844 CTGG------AA---AAGAAAACAAT---------CACTTCCTACTCTC----A
i triMan1.JH594629             I 7 C 0
s dasNov3.JH567436               1035451 35 -   2788317 TTGAAA-T--GA---AAGAAAATGTT---------CACTTTCTACATTC----A
i dasNov3.JH567436             I 5 C 0
s xenTro7.KB021654              31012811 27 - 122929044 ------------TTTAAGGGAAT--C---------TGCTTTACAATATC----A
i xenTro7.KB021654             C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e felCat8.chrA3                134108711 5116 + 140925898 I
e ornAna1.Contig30778               4898  0 +      7217 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120649                 20393  0 -    165821 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280499  0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH737735                 41164  0 -    338457 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e sarHar1.chr1_GL834688_random    525154 8404 +   3395230 I
e melGal1.chr3                  91313763  0 + 100405168 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1989025  0 +   4979691 I
e chrPic2.chrUn_KK088237v1       5684365  0 -  22294289 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530533585 5218 + 748055161 I
e taeGut2.chr2                 147424537  0 + 156412533 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=19792.000000
s hg38.chr8_KI270814v1_alt         87661 9 +    141812 ATCGCGGCT
s ponAbe2.chr8                  59057196 9 + 153482349 ATCGCGGCT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48135856 9 + 100215132 ATCGTGGCT
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99342976 9 + 108792865 GTCACAGCT
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24009268 9 +  27210278 GACACAGCT
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21191633 7 -  23169006 GCCCTG--C
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19214203 9 -  22931326 CTCATGGCT
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2808118 9 -   6207710 CTCATGGCT
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10843722 8 +  17242564 CTCA-GGCT
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84037883 9 +  91571448 CTGGTGGCT
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6811389 9 -  14545593 TTCGTGGCT
i cerSim1.JH767782             C 0 C 0
s canFam3.chr17                 57841399 9 -  64289059 CTCACGGCT
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13613764 8 -  19722643 CTCACAGC-
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3036904 8 +   4816872 CTCACAGC-
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19414192 9 -  23789964 CTCATGGCT
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27621555 9 -  46401353 ATCGCTACT
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9968972 9 +  24341844 ATCGCTGCT
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1035486 9 -   2788317 GTCACTCTT
i dasNov3.JH567436             C 0 C 0
s allMis1.JH736879                289968 9 +    291046 ACCGCGGCG
i allMis1.JH736879             n 0 C 0
s xenTro7.KB021654              31012838 7 - 122929044 --CAAGGCA
i xenTro7.KB021654             C 0 N 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e felCat8.chrA3                134108711 5116 + 140925898 I
e ornAna1.Contig30778               4898 0 +      7217 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120649                 20393 0 -    165821 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221189              55280499 0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e sarHar1.chr1_GL834688_random    525154 8404 +   3395230 I
e melGal1.chr3                  91313763 0 + 100405168 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1989025 0 +   4979691 I
e chrPic2.chrUn_KK088237v1       5684365 0 -  22294289 I
e pelSin1.JH211373               2650239 0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530533585 5218 + 748055161 I
e taeGut2.chr2                 147424537 0 + 156412533 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=50865.000000
s hg38.chr8_KI270814v1_alt         87670  75 +    141812 CCAATCCATGTGC--T---AA-GGCTGTGC-TGGGGTCAGAA------CTCT-GGGT----TCCCAGGC----CCCAA------------------------GCCTCCACAGCA-AGCTCCT
s ponAbe2.chr8                  59057205  75 + 153482349 CCAATCCATGTGC--T---AA-GGCTGTGC-TGGGGTCAGAA------CTCT-GGGA----TCCCAGGC----TCCAA------------------------GCCTCCACAGCA-AGCTCCT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48135865  75 + 100215132 CCAATCCATGTGC--T---AA-GGCTGTGC-TGGGGTCAGAA------CTCT-GGGT----TCCCAGGC----CCCAA------------------------GCCTCCACAGCA-AGCTCCT
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99342985  64 + 108792865 CC-ACCCATAAGC--T----G-GGCTGTGC-TGGGGTTGATG------CTCT-G------------GGC----CCCAG------------------------GCC-CCATGGGA-AGCTCTG
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24009277  64 +  27210278 CC-ACCCATAAGC--T----G-GGCTGTGC-TGGGGTTGATG------CTCT-G------------GGC----CCCAG------------------------GCC-CCACGGCA-AGCTCTG
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21191640  63 -  23169006 CCAGCCCACACAC--GCCAGG-GTCTGTGC-TCAGGCCGGA-------------------------GAG----CCCAG------------------------ACT-CTGCAGTG-AGCTCCT
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19214212  73 -  22931326 CCGTCCGATGCCC--G---GG-GGCTGTGC-TTCGGCCGGTT-------TCG-GGGC----CCACAGAC----CCCCA------------------------TCT--CTTAGCACAGCCCCC
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2808127  73 -   6207710 CCATCCGATGCCC--G---GG-GGCTGTGC-TTTGGCCAGTT-------TCA-GGGC----CCACAGAC----CCCCG------------------------TCT--CTTAGCATAGCCCCC
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10843730  75 +  17242564 CCATCTGATGCCC--T---GG-GGCTGGGC-TTTGGTCAGTT------CTGG-GGGC----CCAGAGCC----CCCAA------------------------TCT-CCCTAGCACAGCCCCC
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84037892  69 +  91571448 CCATCCGACGCCC--T---GG-GGCTG------TGCTCAGTT------CTCA--GGC----CCCCAGAT----CCCAA------------------------CCT-CCCCAGCACAGCCCCA
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6811398  74 -  14545593 CCATCTGATGTCC--T---GG-GGCTGTGC-TTTGCTTAGTT------CTCA--GGC----CCACAGAT----CCCAG------------------------TCT-CCCCAGCACAGCCCTA
i cerSim1.JH767782             C 0 C 0
s canFam3.chr17                 57841408  75 -  64289059 CTGTCCAATGTCC--T----G-GGCTATGC-TTCATTGATGT------CTCA-GGGC----CCACAGAT----CCCAG------------------------TCTCCCCCAGAACTGACCCC
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13613772  70 -  19722643 ---TCCAACATCC--T----G-GGCTATGT-TTTACTGAAGT------CTCA--GGC----CCACAGAC----CCCAA------------------------TCT-TCCCAGAACAGCCCCC
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3036912  71 +   4816872 ---TCCAATGTGC--T----G-GGCTACGC-TTCACTGAAGT------CTCA-GGGC----CCACAGAC----TGCAA------------------------TCT-CCCCAGAAAAGCCCCC
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19414201  71 -  23789964 CC-ACTGACGACC--T----G-GGGCTTGC-TTCGCTCAGCT------CTT---GGC----CTCCATGA----CCCCG------------------------TCT-CCCTATCACAGTCCCC
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27621564 103 -  46401353 CCAACCAATGTGA--T---AAGAGTTGTGCTTTTGGTCAATT-----TCTCTGGGGC----CCACAAGC----CTTAAAAGACACCCTCCAACTCCAGCTACTCT-TACTAGCACAGCTCTC
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9968981 102 +  24341844 CCCACCAACATAC--T---GA-AGTTGTGCTTTTGGTCAATT-----TCTCTAGGGC----CCACGAAC----CTCAAAGGACACCCTCCAGCTCCGGTGAGTCT-CCCTAGCACTGCCCCT
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1035495 102 -   2788317 CTAACCATTGTGCCTT---GAGGGCTATGC-TTCGGTCTGTT-----TCTCT-GGGT----CCACAGAC----CCCCAAA-ACATGCTCCAACTCTAACCATTCC-CCCCAGCACAGTTCCA
i dasNov3.JH567436             C 0 C 0
s allMis1.JH736879                289977  89 +    291046 CTGATCCGCGGCA--G---GC-GGGCGAGC-CGGGGCCCGTGGGGGCGCCTG-GAGCTGCTCCCCAGGCACTGCTCGG------------------------CCTGCCCCAGCC-CGCCCCC
i allMis1.JH736879             C 0 n 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e felCat8.chrA3                134108711 5116 + 140925898 I
e ornAna1.Contig30778               4898   0 +      7217 I
e tetNig2.chr10                  6379385   0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382   0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820   0 -   5414369 I
e araMac1.AOUJ01470298               637   0 -       895 I
e takFla1.KE120649                 20393   0 -    165821 I
e fr3.HE591725                    289786   0 -    411779 I
e ficAlb2.chr2                 148476508   0 + 157563209 I
e anoCar2.chr1                 148577473   4 + 263920458 I
e pseHum1.KB221189              55280499   0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214   0 -  25666195 I
e falPer1.KB390952               2753956   0 -  18327016 I
e falChe1.KB397350               1707310   0 -   3649919 I
e macEug2.GL109592                105897   0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e sarHar1.chr1_GL834688_random    525154 8404 +   3395230 I
e melGal1.chr3                  91313763   0 + 100405168 I
e anaPla1.KB742696               1254472   0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1989025   0 +   4979691 I
e chrPic2.chrUn_KK088237v1       5684365   0 -  22294289 I
e pelSin1.JH211373               2650239   0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530533585 5218 + 748055161 I
e taeGut2.chr2                 147424537   0 + 156412533 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=4839.000000
s hg38.chr8_KI270814v1_alt         87745 16 +    141812 AGT-AGGGG-AAA---AAAAG
s ponAbe2.chr8                  59057280 17 + 153482349 AAT-AGGGGAAAA---AAAAG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48135940 16 + 100215132 AGT-AAGGG-GAA---AAAAG
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99343049 16 + 108792865 AGC-AGGGG-AAA---CAAAG
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24009341 16 +  27210278 AGC-AGGGG-AAA---CAAAG
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21191703 16 -  23169006 CAC-ACAGG-AAT---CAGAA
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19214285 17 -  22931326 AG--GGGGG-AAAC-TAAAAG
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2808200 18 -   6207710 AGT-GGGGG-AAAC-TAAAAG
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10843805 18 +  17242564 AAC-AGGGG-AGAC-TAAAAG
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84037961 17 +  91571448 T-C-AGGGG-AAGC-CAAAAG
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6811472 17 -  14545593 T-C-AGGGG-AAGC-CAAAAG
i cerSim1.JH767782             C 0 C 0
s canFam3.chr17                 57841483 18 -  64289059 CAC-AGGGC-AACA-CAGAAC
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13613842 18 -  19722643 CGC-AGGGG-AACT-CAGAAC
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3036983 18 +   4816872 CAC-AGGGG-AACT-CAGAAT
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19414272 17 -  23789964 AAC-AGGGG-GAC--CAAGAG
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27621667 20 -  46401353 AAAGAGTGG-GAAACCAAAAG
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9969083 18 +  24341844 AAA-AGTGG-GAAG-CAAAAG
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1035597 19 -   2788317 AAG-AGTGG-AAAAACAAAAG
i dasNov3.JH567436             C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e felCat8.chrA3                134108711 5116 + 140925898 I
e ornAna1.Contig30778               4898  0 +      7217 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120649                 20393  0 -    165821 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280499  0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH736879                290066  0 +    291046 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e sarHar1.chr1_GL834688_random    525154 8404 +   3395230 I
e melGal1.chr3                  91313763  0 + 100405168 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1989025  0 +   4979691 I
e chrPic2.chrUn_KK088237v1       5684365  0 -  22294289 I
e pelSin1.JH211373               2650239  0 -   4257854 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530533585 5218 + 748055161 I
e taeGut2.chr2                 147424537  0 + 156412533 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=18854.000000
s hg38.chr8_KI270814v1_alt         87761 4 +    141812 GCAA
s ponAbe2.chr8                  59057297 4 + 153482349 GAAA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48135956 4 + 100215132 GCAA
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99343065 4 + 108792865 GCAG
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24009357 4 +  27210278 GCAG
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21191719 1 -  23169006 G---
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19214302 4 -  22931326 GGAA
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2808218 4 -   6207710 GGAA
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10843823 4 +  17242564 GAAA
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84037978 4 +  91571448 GAAA
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6811489 4 -  14545593 GAAA
i cerSim1.JH767782             C 0 C 0
s canFam3.chr17                 57841501 4 -  64289059 AAAG
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13613860 4 -  19722643 GAAG
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3037001 4 +   4816872 GAAG
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19414289 4 -  23789964 GAAG
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27621687 4 -  46401353 GAAA
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9969101 4 +  24341844 GAAA
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1035616 4 -   2788317 GAAA
i dasNov3.JH567436             C 0 C 0
s pelSin1.JH207189               1424328 1 +   1874153 ---G
i pelSin1.JH207189             n 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e felCat8.chrA3                134108711 5116 + 140925898 I
e ornAna1.Contig30778               4898 0 +      7217 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120649                 20393 0 -    165821 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221189              55280499 0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH736879                290066 0 +    291046 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e sarHar1.chr1_GL834688_random    525154 8404 +   3395230 I
e melGal1.chr3                  91313763 0 + 100405168 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1989025 0 +   4979691 I
e chrPic2.chrUn_KK088237v1       5684365 0 -  22294289 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530533585 5218 + 748055161 I
e taeGut2.chr2                 147424537 0 + 156412533 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-25542.000000
s hg38.chr8_KI270814v1_alt         87765  3 +    141812 A-------------GT
s ponAbe2.chr8                  59057301  3 + 153482349 A-------------GT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48135960  3 + 100215132 A-------------GT
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99343069  3 + 108792865 A-------------GT
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24009361  3 +  27210278 A-------------GT
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19214306 16 -  22931326 AACAGAACGAAGGCGG
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2808222 16 -   6207710 AACAGAACGAAGGCGG
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10843827 16 +  17242564 AACAGAACGAAGGGGG
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84037982 16 +  91571448 AACAGAATGAAGAGGG
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6811493 16 -  14545593 AACAGAACGAAGGGGA
i cerSim1.JH767782             C 0 C 0
s canFam3.chr17                 57841505 16 -  64289059 AAGAGAACGAAGGAGG
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13613864 15 -  19722643 AAGAGAACG-AGGGGA
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3037005 16 +   4816872 AAGAGAATGAAGGGGA
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19414293 14 -  23789964 AACAGAAGTA--GGGG
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27621691 16 -  46401353 AAAAGATCTAAGGGGG
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9969105 16 +  24341844 AACAGATCTGAGGAGA
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1035620 16 -   2788317 AACAGATTTAAGGGCA
i dasNov3.JH567436             C 0 C 0
s pelSin1.JH207189               1424329  6 +   1874153 CACAGG----------
i pelSin1.JH207189             C 0 C 0
s oryLat2.chr4                  28408540  3 -  34636364 ---agt----------
i oryLat2.chr4                 N 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e felCat8.chrA3                134108711 5116 + 140925898 I
e ornAna1.Contig30778               4898  0 +      7217 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120649                 20393  0 -    165821 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221189              55280499  0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH736879                290066  0 +    291046 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH739914               5157724 543 -   7168866 T
e sarHar1.chr1_GL834688_random    525154 8404 +   3395230 I
e melGal1.chr3                  91313763  0 + 100405168 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1989025  0 +   4979691 I
e chrPic2.chrUn_KK088237v1       5684365  0 -  22294289 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530533585 5218 + 748055161 I
e taeGut2.chr2                 147424537  0 + 156412533 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21191720  0 -  23169006 C
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=3031.000000
s hg38.chr8_KI270814v1_alt         87768 2 +    141812 CT
s ponAbe2.chr8                  59057304 2 + 153482349 CT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48135963 2 + 100215132 CT
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99343072 2 + 108792865 CT
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24009364 2 +  27210278 CT
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19214322 2 -  22931326 CT
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2808238 2 -   6207710 CT
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10843843 2 +  17242564 CT
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84037998 1 +  91571448 C-
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6811509 2 -  14545593 CA
i cerSim1.JH767782             C 0 C 0
s canFam3.chr17                 57841521 2 -  64289059 TC
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13613879 2 -  19722643 CC
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3037021 2 +   4816872 CC
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19414307 2 -  23789964 CT
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27621707 2 -  46401353 CT
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9969121 2 +  24341844 CT
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1035636 2 -   2788317 TT
i dasNov3.JH567436             C 0 C 0
s geoFor1.JH740018               1736228 2 +   2102797 CA
i geoFor1.JH740018             n 543 C 0
s pelSin1.JH207189               1424335 2 +   1874153 TA
i pelSin1.JH207189             C 0 C 0
s oryLat2.chr4                  28408543 2 -  34636364 tt
i oryLat2.chr4                 C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e felCat8.chrA3                134108711 5116 + 140925898 I
e ornAna1.Contig30778               4898 0 +      7217 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120649                 20393 0 -    165821 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221189              55280499 0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH736879                290066 0 +    291046 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e sarHar1.chr1_GL834688_random    525154 8404 +   3395230 I
e melGal1.chr3                  91313763 0 + 100405168 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1989025 0 +   4979691 I
e chrPic2.chrUn_KK088237v1       5684365 0 -  22294289 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530533585 5218 + 748055161 I
e taeGut2.chr2                 147424537 0 + 156412533 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21191720 0 -  23169006 C
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=85759.000000
s hg38.chr8_KI270814v1_alt         87770 9 +    141812 TCTGTCTGC
s ponAbe2.chr8                  59057306 9 + 153482349 TCTGTATGC
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48135965 9 + 100215132 TCTGTCTGC
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99343074 9 + 108792865 TCTGTCTGC
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24009366 9 +  27210278 TCTGTCTGC
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19214324 9 -  22931326 TCTGTCTCC
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2808240 9 -   6207710 TCTGTCTCC
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10843845 9 +  17242564 TCTGTCTCC
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84037999 9 +  91571448 TCTGTCTCC
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6811511 9 -  14545593 TCTGTCTCC
i cerSim1.JH767782             C 0 C 0
s canFam3.chr17                 57841523 6 -  64289059 ACTGT---T
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13613881 9 -  19722643 CCTGTCTCT
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3037023 9 +   4816872 TCCATCTCT
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19414309 9 -  23789964 TCTGTCTCC
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27621709 9 -  46401353 TCTGTTTCC
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9969123 9 +  24341844 TCTGTTTCC
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1035638 9 -   2788317 TCTGTCTCT
i dasNov3.JH567436             C 0 C 0
s geoFor1.JH740018               1736230 9 +   2102797 TCCGTGGGC
i geoFor1.JH740018             C 0 C 0
s pelSin1.JH207189               1424337 9 +   1874153 CGTGTTTGC
i pelSin1.JH207189             C 0 I 3
s xenTro7.KB022020                 30834 9 -     78772 TCTCTCTGT
i xenTro7.KB022020             N 0 I 6
s oryLat2.chr4                  28408545 9 -  34636364 tttgttttc
i oryLat2.chr4                 C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e felCat8.chrA3                134108711 5116 + 140925898 I
e ornAna1.Contig30778               4898 0 +      7217 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120649                 20393 0 -    165821 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221189              55280499 0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH736879                290066 0 +    291046 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e sarHar1.chr1_GL834688_random    525154 8404 +   3395230 I
e melGal1.chr3                  91313763 0 + 100405168 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e apaSpi1.KB929668               5961501 297 -  12308914 T
e cheMyd1.KB479743               1989025 0 +   4979691 I
e chrPic2.chrUn_KK088237v1       5684365 0 -  22294289 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530533585 5218 + 748055161 I
e taeGut2.chr2                 147424537 0 + 156412533 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21191720 0 -  23169006 C
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=24372.000000
s hg38.chr8_KI270814v1_alt         87779 1 +    141812 T
s ponAbe2.chr8                  59057315 1 + 153482349 T
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48135974 1 + 100215132 T
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99343083 1 + 108792865 T
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24009375 1 +  27210278 T
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19214333 1 -  22931326 T
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2808249 1 -   6207710 T
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10843854 1 +  17242564 T
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84038008 1 +  91571448 T
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6811520 1 -  14545593 T
i cerSim1.JH767782             C 0 C 0
s canFam3.chr17                 57841529 1 -  64289059 T
i canFam3.chr17                C 0 I 1
s musFur1.GL896914              13613890 1 -  19722643 T
i musFur1.GL896914             C 0 I 1
s odoRosDiv1.KB229025            3037032 1 +   4816872 T
i odoRosDiv1.KB229025          C 0 I 1
s pteAle1.KB030580              19414318 1 -  23789964 T
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27621718 1 -  46401353 C
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9969132 1 +  24341844 T
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1035647 1 -   2788317 T
i dasNov3.JH567436             C 0 C 0
s sarHar1.chr3_GL849915_random   3907110 1 +   4730170 t
i sarHar1.chr3_GL849915_random n 8404 C 0
s geoFor1.JH740018               1736239 1 +   2102797 T
i geoFor1.JH740018             C 0 C 0
s melGal1.chr7                  34309994 1 -  38723565 T
i melGal1.chr7                 n 0 C 0
s pelSin1.JH207189               1424349 1 +   1874153 T
i pelSin1.JH207189             I 3 C 0
s apaSpi1.KB929605                579428 1 +   1015623 t
i apaSpi1.KB929605             n 297 C 0
s xenTro7.KB022020                 30849 1 -     78772 T
i xenTro7.KB022020             I 6 C 0
s oryLat2.chr4                  28408554 1 -  34636364 t
i oryLat2.chr4                 C 0 C 0
s astMex1.KB871645                368491 1 -   1180455 T
i astMex1.KB871645             N 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e felCat8.chrA3                134108711 5116 + 140925898 I
e ornAna1.Contig30778               4898 0 +      7217 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425411               1657068 338 +   1983257 T
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120649                 20393 0 -    165821 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221189              55280499 0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH736879                290066 0 +    291046 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e cheMyd1.KB479743               1989025 0 +   4979691 I
e chrPic2.chrUn_KK088237v1       5684365 0 -  22294289 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530533585 5218 + 748055161 I
e taeGut2.chr2                 147424537 0 + 156412533 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21191720 0 -  23169006 C
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=23434.000000
s hg38.chr8_KI270814v1_alt         87780 1 +    141812 G
s ponAbe2.chr8                  59057316 1 + 153482349 G
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48135975 1 + 100215132 G
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99343084 1 + 108792865 G
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24009376 1 +  27210278 G
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19214334 1 -  22931326 G
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2808250 1 -   6207710 G
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10843855 1 +  17242564 G
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84038009 1 +  91571448 G
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6811521 1 -  14545593 G
i cerSim1.JH767782             C 0 C 0
s canFam3.chr17                 57841531 1 -  64289059 G
i canFam3.chr17                I 1 C 0
s musFur1.GL896914              13613892 1 -  19722643 A
i musFur1.GL896914             I 1 C 0
s odoRosDiv1.KB229025            3037034 1 +   4816872 G
i odoRosDiv1.KB229025          I 1 C 0
s pteAle1.KB030580              19414319 1 -  23789964 A
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27621719 1 -  46401353 A
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9969133 1 +  24341844 G
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1035648 1 -   2788317 G
i dasNov3.JH567436             C 0 C 0
s sarHar1.chr3_GL849915_random   3907111 1 +   4730170 g
i sarHar1.chr3_GL849915_random C 0 C 0
s geoFor1.JH740018               1736240 1 +   2102797 G
i geoFor1.JH740018             C 0 I 12
s melGal1.chr7                  34309995 1 -  38723565 G
i melGal1.chr7                 C 0 I 4
s pelSin1.JH207189               1424350 1 +   1874153 G
i pelSin1.JH207189             C 0 C 0
s apaSpi1.KB929605                579429 1 +   1015623 g
i apaSpi1.KB929605             C 0 C 0
s xenTro7.KB022020                 30850 1 -     78772 G
i xenTro7.KB022020             C 0 C 0
s hapBur1.JH425491                251737 1 -   1273513 G
i hapBur1.JH425491             n 338 C 0
s oryLat2.chr4                  28408555 1 -  34636364 g
i oryLat2.chr4                 C 0 C 0
s astMex1.KB871645                368492 1 -   1180455 G
i astMex1.KB871645             C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e felCat8.chrA3                134108711 5116 + 140925898 I
e ornAna1.Contig30778               4898 0 +      7217 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120649                 20393 0 -    165821 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221189              55280499 0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH736879                290066 0 +    291046 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e cheMyd1.KB479743               1989025 0 +   4979691 I
e chrPic2.chrUn_KK088237v1       5684365 0 -  22294289 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530533585 5218 + 748055161 I
e taeGut2.chr2                 147424537 0 + 156412533 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21191720 0 -  23169006 C
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-24512.000000
s hg38.chr8_KI270814v1_alt         87781 6 +    141812 TGAAGT
s ponAbe2.chr8                  59057317 6 + 153482349 TGAAGT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48135976 6 + 100215132 TGAAGT
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99343085 6 + 108792865 CAAAGG
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24009377 6 +  27210278 CAAAGG
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19214335 6 -  22931326 AGAATG
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2808251 6 -   6207710 AGAATG
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10843856 6 +  17242564 AGAACG
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84038010 6 +  91571448 TGAACA
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6811522 6 -  14545593 TGAACG
i cerSim1.JH767782             C 0 C 0
s canFam3.chr17                 57841532 6 -  64289059 TGGATG
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13613893 6 -  19722643 TGAATG
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3037035 6 +   4816872 TTAATG
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19414320 6 -  23789964 TGAATG
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27621720 6 -  46401353 TGAATG
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9969134 6 +  24341844 GGAACA
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1035649 6 -   2788317 TGAATG
i dasNov3.JH567436             C 0 C 0
s sarHar1.chr3_GL849915_random   3907112 6 +   4730170 tgagtg
i sarHar1.chr3_GL849915_random C 0 C 0
s geoFor1.JH740018               1736253 1 +   2102797 ----C-
i geoFor1.JH740018             I 12 I 21
s taeGut2.chr18                  2063547 1 -  11201131 ----T-
i taeGut2.chr18                n 0 I 17
s melGal1.chr7                  34310000 1 -  38723565 ----T-
i melGal1.chr7                 I 4 I 3
s pelSin1.JH207189               1424351 5 +   1874153 TGTGA-
i pelSin1.JH207189             C 0 I 3
s apaSpi1.KB929605                579430 5 +   1015623 tacat-
i apaSpi1.KB929605             C 0 I 3
s xenTro7.KB022020                 30851 6 -     78772 TGTATG
i xenTro7.KB022020             C 0 I 2
s hapBur1.JH425491                251738 6 -   1273513 GGAGGG
i hapBur1.JH425491             C 0 C 0
s oryLat2.chr4                  28408556 6 -  34636364 ttcagg
i oryLat2.chr4                 C 0 C 0
s astMex1.KB871645                368493 6 -   1180455 TGAATG
i astMex1.KB871645             C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e felCat8.chrA3                134108711 5116 + 140925898 I
e ornAna1.Contig30778               4898 0 +      7217 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120649                 20393 0 -    165821 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221189              55280499 0 -  63311091 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH736879                290066 0 +    291046 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e cheMyd1.KB479743               1989025 0 +   4979691 I
e chrPic2.chrUn_KK088237v1       5684365 0 -  22294289 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530533585 5218 + 748055161 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21191720 0 -  23169006 C
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-138690.000000
s hg38.chr8_KI270814v1_alt         87787  6 +    141812 --C--------------------ATAC----A
s ponAbe2.chr8                  59057323  6 + 153482349 --C--------------------ATAC----A
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48135982  6 + 100215132 --C--------------------ATAC----A
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99343091  5 + 108792865 --C--------------------ACAC-----
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24009383  6 +  27210278 --C--------------------ACAT----G
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19214341  6 -  22931326 --T--------------------GTAC----G
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2808257  6 -   6207710 --T--------------------GTAC----G
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10843862  6 +  17242564 --T--------------------GTAT----G
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84038016  6 +  91571448 --T--------------------GTAT----G
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6811528  6 -  14545593 --T--------------------GTAT----G
i cerSim1.JH767782             C 0 C 0
s canFam3.chr17                 57841538  6 -  64289059 --C--------------------ATAT----G
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13613899  6 -  19722643 --T--------------------GTAG----G
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3037041  6 +   4816872 --T--------------------GTAG----G
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19414326  6 -  23789964 --T--------------------GTAT----G
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27621726  6 -  46401353 --C--------------------ATAT----A
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9969140  6 +  24341844 --C--------------------ATGT----A
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1035655  6 -   2788317 --T--------------------GTAT----G
i dasNov3.JH567436             C 0 C 0
s sarHar1.chr3_GL849915_random   3907118 10 +   4730170 --t--------------------gtacatgtg
i sarHar1.chr3_GL849915_random C 0 C 0
s geoFor1.JH740018               1736275  4 +   2102797 --G--------------------GGA------
i geoFor1.JH740018             I 21 I 8
s taeGut2.chr18                  2063565  4 -  11201131 --T--------------------GTA------
i taeGut2.chr18                I 17 I 7
s pseHum1.KB221220               3809148  4 +   7268516 --T--------------------AAA------
i pseHum1.KB221220             n 0 I 8
s melGal1.chr7                  34310004  4 -  38723565 --T--------------------GCA------
i melGal1.chr7                 I 3 C 0
s pelSin1.JH207189               1424359 24 +   1874153 --TAGGTAAGTGTGCGAGGGTGCGCA------
i pelSin1.JH207189             I 3 C 0
s apaSpi1.KB929605                579438  4 +   1015623 --t--------------------gca------
i apaSpi1.KB929605             I 3 C 0
s xenTro7.KB022020                 30859  4 -     78772 --T--------------------GCA------
i xenTro7.KB022020             I 2 C 0
s hapBur1.JH425491                251744  6 -   1273513 TGT--------------------GGA------
i hapBur1.JH425491             C 0 C 0
s oryLat2.chr4                  28408562  6 -  34636364 ACT--------------------GCA------
i oryLat2.chr4                 C 0 C 0
s astMex1.KB871645                368499  6 -   1180455 CGA--------------------GCG------
i astMex1.KB871645             C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e felCat8.chrA3                134108711 5116 + 140925898 I
e ornAna1.Contig30778               4898  0 +      7217 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120649                 20393  0 -    165821 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH736879                290066  0 +    291046 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.KB277496                  7625 3737 -     10329 T
e cheMyd1.KB479743               1989025  0 +   4979691 I
e chrPic2.chrUn_KK088237v1       5684365  0 -  22294289 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530533585 5218 + 748055161 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21191720  0 -  23169006 C
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-32882.000000
s hg38.chr8_KI270814v1_alt         87793 1 +    141812 -T
s ponAbe2.chr8                  59057329 1 + 153482349 -T
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48135988 1 + 100215132 -T
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99343096 1 + 108792865 -A
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24009389 1 +  27210278 -A
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21191720 1 -  23169006 -G
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19214347 1 -  22931326 -A
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2808263 1 -   6207710 -A
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10843868 1 +  17242564 -A
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84038022 1 +  91571448 -G
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6811534 1 -  14545593 -A
i cerSim1.JH767782             C 0 C 0
s canFam3.chr17                 57841544 1 -  64289059 -A
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13613905 1 -  19722643 -A
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3037047 1 +   4816872 -A
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19414332 1 -  23789964 -A
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27621732 1 -  46401353 -A
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9969146 1 +  24341844 -A
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1035661 1 -   2788317 -A
i dasNov3.JH567436             C 0 C 0
s sarHar1.chr3_GL849915_random   3907128 1 +   4730170 -t
i sarHar1.chr3_GL849915_random C 0 C 0
s amaVit1.AOCU01222764               794 1 -      1397 -T
i amaVit1.AOCU01222764         n 3737 C 0
s melGal1.chr7                  34310008 1 -  38723565 -A
i melGal1.chr7                 C 0 C 0
s xenTro7.KB022020                 30863 1 -     78772 -T
i xenTro7.KB022020             C 0 C 0
s hapBur1.JH425491                251750 1 -   1273513 C-
i hapBur1.JH425491             C 0 C 0
s oryLat2.chr4                  28408568 1 -  34636364 C-
i oryLat2.chr4                 C 0 C 0
s astMex1.KB871645                368505 1 -   1180455 C-
i astMex1.KB871645             C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e felCat8.chrA3                134108711 5116 + 140925898 I
e ornAna1.Contig30778               4898 0 +      7217 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120649                 20393 0 -    165821 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221220               3809152 8 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH736879                290066 0 +    291046 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736279 8 +   2102797 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e apaSpi1.KB929605                579442 0 +   1015623 C
e cheMyd1.KB479743               1989025 0 +   4979691 I
e chrPic2.chrUn_KK088237v1       5684365 0 -  22294289 I
e pelSin1.JH207189               1424383 0 +   1874153 C
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530533585 5218 + 748055161 I
e taeGut2.chr18                  2063569 7 -  11201131 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=76465.000000
s hg38.chr8_KI270814v1_alt         87794 8 +    141812 ATGAATGC
s ponAbe2.chr8                  59057330 8 + 153482349 ATGAATGC
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48135989 8 + 100215132 ATGAATGC
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99343097 8 + 108792865 GTGAATGC
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24009390 8 +  27210278 GTGAATGC
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21191721 8 -  23169006 GGGAGCGC
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19214348 8 -  22931326 GTGAATGT
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2808264 8 -   6207710 GTGAATGT
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10843869 8 +  17242564 GTGGATGT
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84038023 8 +  91571448 CTAAATGT
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6811535 8 -  14545593 GTAAATGT
i cerSim1.JH767782             C 0 C 0
s canFam3.chr17                 57841545 8 -  64289059 GTCAATGT
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13613906 8 -  19722643 GTCAATGT
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3037048 8 +   4816872 GTCAATGT
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19414333 8 -  23789964 GTGACTGC
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27621733 8 -  46401353 GTGAACGT
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9969147 8 +  24341844 GTGAATGC
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1035662 8 -   2788317 GTGAATTG
i dasNov3.JH567436             C 0 C 0
s sarHar1.chr3_GL849915_random   3907129 8 +   4730170 gtgagtat
i sarHar1.chr3_GL849915_random C 0 C 0
s amaVit1.AOCU01222764               795 8 -      1397 ATGAGTGT
i amaVit1.AOCU01222764         C 0 I 10
s melGal1.chr7                  34310009 8 -  38723565 ACGCGTGT
i melGal1.chr7                 C 0 I 1
s pelSin1.JH207189               1424383 7 +   1874153 -CAGGTAC
i pelSin1.JH207189             C 0 I 1
s apaSpi1.KB929605                579442 7 +   1015623 -tgtgcac
i apaSpi1.KB929605             C 0 I 1
s xenTro7.KB022020                 30864 8 -     78772 ATGAATGT
i xenTro7.KB022020             C 0 I 1
s hapBur1.JH425491                251751 8 -   1273513 AGGGAATC
i hapBur1.JH425491             C 0 C 0
s oryLat2.chr4                  28408569 8 -  34636364 ATGAGGCC
i oryLat2.chr4                 C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e felCat8.chrA3                134108711 5116 + 140925898 I
e ornAna1.Contig30778               4898 0 +      7217 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e astMex1.KB871645                368506 0 -   1180455 C
e takFla1.KE120649                 20393 0 -    165821 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221220               3809152 8 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH736879                290066 0 +    291046 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736279 8 +   2102797 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e cheMyd1.KB479743               1989025 0 +   4979691 I
e chrPic2.chrUn_KK088237v1       5684365 0 -  22294289 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530533585 5218 + 748055161 I
e taeGut2.chr18                  2063569 7 -  11201131 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=6821.000000
s hg38.chr8_KI270814v1_alt         87802 1 +    141812 -T
s ponAbe2.chr8                  59057338 1 + 153482349 -T
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48135997 1 + 100215132 -T
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99343105 1 + 108792865 -T
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24009398 1 +  27210278 -T
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21191729 1 -  23169006 -T
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19214356 1 -  22931326 -T
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2808272 1 -   6207710 -T
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10843877 1 +  17242564 -T
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84038031 1 +  91571448 -T
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6811543 1 -  14545593 -T
i cerSim1.JH767782             C 0 C 0
s canFam3.chr17                 57841553 1 -  64289059 -T
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13613914 1 -  19722643 -T
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3037056 1 +   4816872 -T
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19414341 1 -  23789964 -T
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27621741 1 -  46401353 -T
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9969155 1 +  24341844 -T
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1035670 1 -   2788317 -T
i dasNov3.JH567436             C 0 C 0
s sarHar1.chr3_GL849915_random   3907137 1 +   4730170 -t
i sarHar1.chr3_GL849915_random C 0 C 0
s hapBur1.JH425491                251759 1 -   1273513 A-
i hapBur1.JH425491             C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e felCat8.chrA3                134108711 5116 + 140925898 I
e xenTro7.KB022020                 30872 1 -     78772 I
e ornAna1.Contig30778               4898 0 +      7217 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e astMex1.KB871645                368506 0 -   1180455 C
e oryLat2.chr4                  28408577 0 -  34636364 C
e takFla1.KE120649                 20393 0 -    165821 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221220               3809152 8 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH736879                290066 0 +    291046 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736279 8 +   2102797 I
e melGal1.chr7                  34310017 1 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764               803 10 -      1397 I
e apaSpi1.KB929605                579449 1 +   1015623 I
e cheMyd1.KB479743               1989025 0 +   4979691 I
e chrPic2.chrUn_KK088237v1       5684365 0 -  22294289 I
e pelSin1.JH207189               1424390 1 +   1874153 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530533585 5218 + 748055161 I
e taeGut2.chr18                  2063569 7 -  11201131 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-3665.000000
s hg38.chr8_KI270814v1_alt         87803 3 +    141812 GGT--
s ponAbe2.chr8                  59057339 3 + 153482349 GGT--
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48135998 3 + 100215132 GGT--
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99343106 3 + 108792865 GGG--
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24009399 3 +  27210278 GGG--
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21191730 3 -  23169006 GAG--
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19214357 3 -  22931326 AAG--
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2808273 3 -   6207710 GAG--
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10843878 3 +  17242564 gag--
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84038032 3 +  91571448 GAG--
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6811544 1 -  14545593 --G--
i cerSim1.JH767782             C 0 C 0
s canFam3.chr17                 57841554 3 -  64289059 CAG--
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13613915 3 -  19722643 CAG--
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3037057 3 +   4816872 CAG--
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19414342 3 -  23789964 GAA--
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27621742 3 -  46401353 GAG--
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9969156 3 +  24341844 GAG--
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1035671 3 -   2788317 GAG--
i dasNov3.JH567436             C 0 C 0
s sarHar1.chr3_GL849915_random   3907138 3 +   4730170 gag--
i sarHar1.chr3_GL849915_random C 0 C 0
s ornAna1.Contig53964                247 3 -      2070 GGG--
i ornAna1.Contig53964          n 0 C 0
s melGal1.chr7                  34310018 2 -  38723565 -AG--
i melGal1.chr7                 I 1 I 12
s chrPic2.chrUn_KK083223v1        104709 2 +    779542 -TG--
i chrPic2.chrUn_KK083223v1     n 0 I 16
s pelSin1.JH207189               1424391 2 +   1874153 -TG--
i pelSin1.JH207189             I 1 I 2
s apaSpi1.KB929605                579450 2 +   1015623 -tg--
i apaSpi1.KB929605             I 1 I 2
s xenTro7.KB022020                 30873 2 -     78772 -TG--
i xenTro7.KB022020             I 1 I 16
s hapBur1.JH425491                251760 3 -   1273513 --Gtt
i hapBur1.JH425491             C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e felCat8.chrA3                134108711 5116 + 140925898 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e astMex1.KB871645                368506 0 -   1180455 C
e oryLat2.chr4                  28408577 0 -  34636364 C
e takFla1.KE120649                 20393 0 -    165821 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221220               3809152 8 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH736879                290066 0 +    291046 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736279 8 +   2102797 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764               803 10 -      1397 I
e cheMyd1.KB479743               1989025 0 +   4979691 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530533585 5218 + 748055161 I
e taeGut2.chr18                  2063569 7 -  11201131 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-164475.000000
s hg38.chr8_KI270814v1_alt         87806 16 +    141812 TG--C------AAATGAGGAAAGA
s ponAbe2.chr8                  59057342 16 + 153482349 TG--C------AAATGAGCAAAGA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48136001 16 + 100215132 TG--C------AAATGAGGAAAGA
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99343109 16 + 108792865 TG--T------GAATGAGAAAATA
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24009402 16 +  27210278 TG--T------GAATGAGAAAATA
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21191733  8 -  23169006 GG--C------AAATG--------
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19214360 16 -  22931326 AG--A------GAACAAGGGAAGA
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2808276 16 -   6207710 AG--A------GAACAAGGAAAGA
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10843881 16 +  17242564 ag--a------gaactagaaaaga
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84038035 16 +  91571448 AG--A------GAACAAGAAAAAA
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6811545 16 -  14545593 AG--A------GAACAAGAAAAGA
i cerSim1.JH767782             C 0 C 0
s canFam3.chr17                 57841557 13 -  64289059 AG--A------C---AGGAAGAGA
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13613918 13 -  19722643 AG--A------G---AGGAAAAGA
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3037060 13 +   4816872 AG--A------G---AGGAAAAGA
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19414345 16 -  23789964 CG--A------GAATGACAAAATG
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27621745 16 -  46401353 TG--A------GAATGAGAAAAGA
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9969159 16 +  24341844 TG--A------GAAAGAGAAAATA
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1035674  6 -   2788317 TG--A------GTA----------
i dasNov3.JH567436             C 0 C 0
s sarHar1.chr3_GL849915_random   3907141 12 +   4730170 tg--act----gcataag------
i sarHar1.chr3_GL849915_random C 0 C 0
s ornAna1.Contig53964                250 16 -      2070 TG--C------ATTTGAGAAAGGG
i ornAna1.Contig53964          C 0 C 0
s geoFor1.JH740018               1736287 10 +   2102797 ag--g------gagcagg------
i geoFor1.JH740018             I 8 I 17
s taeGut2.chr18                  2063576  9 -  11201131 -G--A------GAGCGTG------
i taeGut2.chr18                I 7 I 14
s pseHum1.KB221220               3809160 10 +   7268516 TG--A------GTGCATT------
i pseHum1.KB221220             I 8 I 16
s amaVit1.AOCU01222764               813 10 -      1397 CG--C------GTATATG------
i amaVit1.AOCU01222764         I 10 I 14
s melGal1.chr7                  34310032 12 -  38723565 TGTAA------GAGTATG------
i melGal1.chr7                 I 12 I 22
s cheMyd1.KB605988                134157 10 +    155857 AG--G------GCGTGTA------
i cheMyd1.KB605988             n 0 C 0
s chrPic2.chrUn_KK083223v1        104727 10 +    779542 AG--C------AAGTGTG------
i chrPic2.chrUn_KK083223v1     I 16 C 0
s pelSin1.JH207189               1424395 10 +   1874153 TG--C------GGGTGTG------
i pelSin1.JH207189             I 2 C 0
s apaSpi1.KB929605                579454 10 +   1015623 gg--c------gtgtgtg------
i apaSpi1.KB929605             I 2 I 4
s xenTro7.KB022020                 30891 10 -     78772 TG--T------GTATATG------
i xenTro7.KB022020             I 16 C 0
s hapBur1.JH425491                251763 12 -   1273513 ------agtgagtgagtg------
i hapBur1.JH425491             C 0 C 0
s oryLat2.chr4                  28408577  7 -  34636364 -----------GTGCACG------
i oryLat2.chr4                 C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e felCat8.chrA3                134108711 5116 + 140925898 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e astMex1.KB871645                368506  0 -   1180455 C
e takFla1.KE120649                 20393  0 -    165821 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH736879                290066  0 +    291046 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e anaPla1.KB742696               1254472  0 -   1270250 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530533585 5218 + 748055161 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=14356.000000
s hg38.chr8_KI270814v1_alt         87822 2 +    141812 AA
s ponAbe2.chr8                  59057358 2 + 153482349 AA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48136017 2 + 100215132 AA
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99343125 2 + 108792865 AA
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24009418 2 +  27210278 AA
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19214376 2 -  22931326 AC
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2808292 2 -   6207710 AC
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10843897 2 +  17242564 ac
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84038051 2 +  91571448 AC
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6811561 2 -  14545593 AA
i cerSim1.JH767782             C 0 C 0
s canFam3.chr17                 57841570 2 -  64289059 AA
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13613931 2 -  19722643 AA
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3037073 2 +   4816872 AA
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19414361 2 -  23789964 AG
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27621761 2 -  46401353 AA
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9969175 2 +  24341844 AA
i triMan1.JH594629             C 0 C 0
s ornAna1.Contig53964                266 2 -      2070 TG
i ornAna1.Contig53964          C 0 C 0
s hapBur1.JH425491                251775 2 -   1273513 aa
i hapBur1.JH425491             C 0 C 0
s oryLat2.chr4                  28408584 2 -  34636364 AA
i oryLat2.chr4                 C 0 C 0
s danRer10.chr3                  6752991 1 +  62385949 -A
i danRer10.chr3                N 0 C 0
s astMex1.KB871645                368506 1 -   1180455 -A
i astMex1.KB871645             C 0 C 0
s lepOcu1.chrUn_JH591782            9327 2 -     15061 aa
i lepOcu1.chrUn_JH591782       N 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e felCat8.chrA3                134108711 5116 + 140925898 I
e xenTro7.KB022020                 30901 0 -     78772 C
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120649                 20393 0 -    165821 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221220               3809170 16 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH736879                290066 0 +    291046 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736297 17 +   2102797 I
e sarHar1.chr3_GL849915_random   3907153 0 +   4730170 C
e melGal1.chr7                  34310044 22 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764               823 14 -      1397 I
e apaSpi1.KB929605                579464 4 +   1015623 I
e cheMyd1.KB605988                134167 0 +    155857 C
e chrPic2.chrUn_KK083223v1        104737 0 +    779542 C
e pelSin1.JH207189               1424405 0 +   1874153 C
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530533585 5218 + 748055161 I
e taeGut2.chr18                  2063585 14 -  11201131 I
e dasNov3.JH567436               1035680 0 -   2788317 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21191741 0 -  23169006 C
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-27497.000000
s hg38.chr8_KI270814v1_alt         87824 4 +    141812 TGA--G
s ponAbe2.chr8                  59057360 4 + 153482349 TGA--G
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48136019 4 + 100215132 TGA--G
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99343127 4 + 108792865 tgt--g
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24009420 4 +  27210278 tgt--g
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19214378 4 -  22931326 CAA--G
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2808294 4 -   6207710 CAA--A
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10843899 4 +  17242564 gga--g
i orcOrc1.KB316907             C 0 I 4321
s equCab2.chr15                 84038053 4 +  91571448 TGA--G
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6811563 4 -  14545593 TGA--G
i cerSim1.JH767782             C 0 C 0
s canFam3.chr17                 57841572 4 -  64289059 GAG--G
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13613933 4 -  19722643 CGA--g
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3037075 6 +   4816872 TGAAtg
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19414363 4 -  23789964 TGT--G
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27621763 1 -  46401353 T-----
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9969177 2 +  24341844 TG----
i triMan1.JH594629             C 0 C 0
s ornAna1.Contig53964                268 4 -      2070 TGA--G
i ornAna1.Contig53964          C 0 C 0
s geoFor1.JH740018               1736314 4 +   2102797 TGA--C
i geoFor1.JH740018             I 17 C 0
s taeGut2.chr18                  2063599 4 -  11201131 TTA--A
i taeGut2.chr18                I 14 C 0
s pseHum1.KB221220               3809186 4 +   7268516 TCA--A
i pseHum1.KB221220             I 16 C 0
s amaVit1.AOCU01222764               837 4 -      1397 TTG--C
i amaVit1.AOCU01222764         I 14 C 0
s melGal1.chr7                  34310066 4 -  38723565 ACA--G
i melGal1.chr7                 I 22 C 0
s allMis1.JH737491                498210 4 -    628740 TCT--G
i allMis1.JH737491             n 0 C 0
s cheMyd1.KB605988                134167 4 +    155857 TCA--G
i cheMyd1.KB605988             C 0 C 0
s chrPic2.chrUn_KK083223v1        104737 4 +    779542 TTT--G
i chrPic2.chrUn_KK083223v1     C 0 C 0
s pelSin1.JH207189               1424405 4 +   1874153 TGA--G
i pelSin1.JH207189             C 0 C 0
s xenTro7.KB022020                 30901 4 -     78772 TGA--G
i xenTro7.KB022020             C 0 I 1
s hapBur1.JH425491                251777 4 -   1273513 tga--g
i hapBur1.JH425491             C 0 C 0
s oryLat2.chr4                  28408586 4 -  34636364 CGG--G
i oryLat2.chr4                 C 0 C 0
s danRer10.chr3                  6752992 4 +  62385949 TGA--G
i danRer10.chr3                C 0 C 0
s astMex1.KB871645                368507 4 -   1180455 TGA--G
i astMex1.KB871645             C 0 C 0
s lepOcu1.chrUn_JH591782            9329 4 -     15061 taa--g
i lepOcu1.chrUn_JH591782       C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e felCat8.chrA3                134108711 5116 + 140925898 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120649                 20393 0 -    165821 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e sarHar1.chr3_GL849915_random   3907153 0 +   4730170 C
e anaPla1.KB742696               1254472 0 -   1270250 I
e apaSpi1.KB929605                579464 4 +   1015623 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530533585 5218 + 748055161 I
e dasNov3.JH567436               1035680 0 -   2788317 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21191741 0 -  23169006 C
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=11849.000000
s hg38.chr8_KI270814v1_alt         87828 1 +    141812 T
s ponAbe2.chr8                  59057364 1 + 153482349 T
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48136023 1 + 100215132 T
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99343131 1 + 108792865 t
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24009424 1 +  27210278 t
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19214382 1 -  22931326 T
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2808298 1 -   6207710 T
i camFer1.KB017763             C 0 C 0
s equCab2.chr15                 84038057 1 +  91571448 T
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6811567 1 -  14545593 C
i cerSim1.JH767782             C 0 C 0
s canFam3.chr17                 57841576 1 -  64289059 T
i canFam3.chr17                C 0 I 3
s musFur1.GL896914              13613937 1 -  19722643 t
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3037081 1 +   4816872 t
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19414367 1 -  23789964 T
i pteAle1.KB030580             C 0 C 0
s hapBur1.JH425491                251781 1 -   1273513 t
i hapBur1.JH425491             C 0 C 0
s oryLat2.chr4                  28408590 1 -  34636364 T
i oryLat2.chr4                 C 0 C 0
s danRer10.chr3                  6752996 1 +  62385949 T
i danRer10.chr3                C 0 C 0
s astMex1.KB871645                368511 1 -   1180455 T
i astMex1.KB871645             C 0 C 0
s lepOcu1.chrUn_JH591782            9333 1 -     15061 t
i lepOcu1.chrUn_JH591782       C 0 I 4
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e felCat8.chrA3                134108711 5116 + 140925898 I
e xenTro7.KB022020                 30905 1 -     78772 I
e ornAna1.Contig53964                272 0 -      2070 C
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120649                 20393 0 -    165821 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221220               3809190 0 +   7268516 C
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH737491                498214 0 -    628740 C
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736318 0 +   2102797 C
e sarHar1.chr3_GL849915_random   3907153 0 +   4730170 C
e melGal1.chr7                  34310070 0 -  38723565 C
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764               841 0 -      1397 C
e apaSpi1.KB929605                579464 4 +   1015623 I
e cheMyd1.KB605988                134171 0 +    155857 C
e chrPic2.chrUn_KK083223v1        104741 0 +    779542 C
e pelSin1.JH207189               1424409 0 +   1874153 C
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530533585 5218 + 748055161 I
e taeGut2.chr18                  2063603 0 -  11201131 C
e dasNov3.JH567436               1035680 0 -   2788317 C
e triMan1.JH594629               9969179 0 +  24341844 C
e loxAfr3.scaffold_20           27621764 0 -  46401353 C
e orcOrc1.KB316907              10843903 4321 +  17242564 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21191741 0 -  23169006 C
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=62459.000000
s hg38.chr8_KI270814v1_alt         87829  6 +    141812 TTG----------TGT
s ponAbe2.chr8                  59057365  6 + 153482349 TTG----------TGT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48136024  6 + 100215132 TTG----------TGT
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99343132  6 + 108792865 gtg----------tgt
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24009425  6 +  27210278 gtg----------tgt
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19214383  6 -  22931326 GCG----------TGT
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2808299  6 -   6207710 GCG----------TGT
i camFer1.KB017763             C 0 C 0
s equCab2.chr15                 84038058  6 +  91571448 GTG----------AGT
i equCab2.chr15                C 0 I 14
s cerSim1.JH767782               6811568  6 -  14545593 GTG----------TGT
i cerSim1.JH767782             C 0 I 4566
s canFam3.chr17                 57841580  6 -  64289059 GTG----------TAT
i canFam3.chr17                I 3 I 7
s musFur1.GL896914              13613938  6 -  19722643 atg----------tgt
i musFur1.GL896914             C 0 I 6
s odoRosDiv1.KB229025            3037082  6 +   4816872 gtg----------tgt
i odoRosDiv1.KB229025          C 0 I 6
s pteAle1.KB030580              19414368  6 -  23789964 GTG----------TGT
i pteAle1.KB030580             C 0 C 0
s sarHar1.chr3_GL849915_random   3907153  5 +   4730170 -tg----------tgt
i sarHar1.chr3_GL849915_random C 0 I 2
s ornAna1.Contig53964                272  5 -      2070 -TG----------CAT
i ornAna1.Contig53964          C 0 C 0
s geoFor1.JH740018               1736318  5 +   2102797 -TC----------CAT
i geoFor1.JH740018             C 0 I 2
s taeGut2.chr18                  2063603  5 -  11201131 -TG----------TGT
i taeGut2.chr18                C 0 I 2
s pseHum1.KB221220               3809190  5 +   7268516 -TG----------TGA
i pseHum1.KB221220             C 0 I 2
s amaVit1.AOCU01222764               841  5 -      1397 -TG----------TAG
i amaVit1.AOCU01222764         C 0 I 2
s melGal1.chr7                  34310070  5 -  38723565 -TG----------TGT
i melGal1.chr7                 C 0 I 2
s allMis1.JH737491                498214  5 -    628740 -TG----------CAT
i allMis1.JH737491             C 0 I 2
s cheMyd1.KB605988                134171  5 +    155857 -TG----------TGT
i cheMyd1.KB605988             C 0 I 2
s chrPic2.chrUn_KK083223v1        104741  5 +    779542 -CA----------CGT
i chrPic2.chrUn_KK083223v1     C 0 I 2
s pelSin1.JH207189               1424409  5 +   1874153 -CA----------TAG
i pelSin1.JH207189             C 0 I 7
s xenTro7.KB022020                 30906  6 -     78772 GTG----------CGT
i xenTro7.KB022020             I 1 C 0
s latCha1.JH131426                 58058  6 +     59601 TTC----------TGT
i latCha1.JH131426             N 0 C 0
s hapBur1.JH425491                251782  6 -   1273513 gag----------tga
i hapBur1.JH425491             C 0 C 0
s oryLat2.chr4                  28408591  6 -  34636364 GTG----------CAC
i oryLat2.chr4                 C 0 C 0
s danRer10.chr3                  6752997 16 +  62385949 GTGAGTGTGTGTAAGA
i danRer10.chr3                C 0 C 0
s astMex1.KB871645                368512  6 -   1180455 GCG----------AGA
i astMex1.KB871645             C 0 C 0
s lepOcu1.chrUn_JH591782            9338  6 -     15061 gtg----------tgt
i lepOcu1.chrUn_JH591782       I 4 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e felCat8.chrA3                134108711 5116 + 140925898 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120649                 20393  0 -    165821 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e anaPla1.KB742696               1254472  0 -   1270250 I
e apaSpi1.KB929605                579464  4 +   1015623 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530533585 5218 + 748055161 I
e dasNov3.JH567436               1035680  0 -   2788317 C
e triMan1.JH594629               9969179  0 +  24341844 C
e loxAfr3.scaffold_20           27621764  0 -  46401353 C
e orcOrc1.KB316907              10843903 4321 +  17242564 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21191741  0 -  23169006 C
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-398322.000000
s hg38.chr8_KI270814v1_alt         87835 18 +    141812 CATTGAGGTAGG----------AAGGGT-----------------
s ponAbe2.chr8                  59057371 18 + 153482349 CATTGAGGTAGG----------AAGGGT-----------------
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48136030 18 + 100215132 CATTGAGGTAGG----------AAGGGT-----------------
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99343138 28 + 108792865 tggggagggagggtgtgtgtcaatgagt-----------------
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24009431 28 +  27210278 tggggagggagggtgtgtgtcaatgagt-----------------
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21191741 15 -  23169006 ---CCGGGCAGG----------GAGGGT-----------------
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19214389 16 -  22931326 --CTTTGGTTGG----------GGGTGG-----------------
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2808305 16 -   6207710 --CTTTGGTTGG----------GGGGGG-----------------
i camFer1.KB017763             C 0 C 0
s equCab2.chr15                 84038078 13 +  91571448 -----CACTGGG----------GAGAGG-----------------
i equCab2.chr15                I 14 C 0
s canFam3.chr17                 57841593 12 -  64289059 ------TGTTGC----------ATGTGT-----------------
i canFam3.chr17                I 7 C 0
s musFur1.GL896914              13613950 12 -  19722643 ------tgttgt----------gcatgt-----------------
i musFur1.GL896914             I 6 C 0
s odoRosDiv1.KB229025            3037094 12 +   4816872 ------tgttgt----------gcgtgt-----------------
i odoRosDiv1.KB229025          I 6 C 0
s pteAle1.KB030580              19414374 16 -  23789964 --ATGAGAGTGT----------GTGTGT-----------------
i pteAle1.KB030580             C 0 C 0
s triMan1.JH594629               9969179  4 +  24341844 ------------------------GTGT-----------------
i triMan1.JH594629             C 0 C 0
s sarHar1.chr3_GL849915_random   3907160 16 +   4730170 ------------GAATGAGTTCATGAAT-----------------
i sarHar1.chr3_GL849915_random I 2 C 0
s ornAna1.Contig53964                277 18 -      2070 TTATGAGGTGGT----------GTGAAT-----------------
i ornAna1.Contig53964          C 0 C 0
s geoFor1.JH740018               1736325  4 +   2102797 ------------------------GAAT-----------------
i geoFor1.JH740018             I 2 I 27
s taeGut2.chr18                  2063610  4 -  11201131 ------------------------AAAT-----------------
i taeGut2.chr18                I 2 I 20
s pseHum1.KB221220               3809197  4 +   7268516 ------------------------GTAT-----------------
i pseHum1.KB221220             I 2 I 30
s melGal1.chr7                  34310077  4 -  38723565 ------------------------CAAT-----------------
i melGal1.chr7                 I 2 I 14
s allMis1.JH737491                498221  4 -    628740 ------------------------CAGG-----------------
i allMis1.JH737491             I 2 I 2
s cheMyd1.KB605988                134178  4 +    155857 ------------------------CGAT-----------------
i cheMyd1.KB605988             I 2 I 8
s chrPic2.chrUn_KK083223v1        104748  4 +    779542 ------------------------GTGC-----------------
i chrPic2.chrUn_KK083223v1     I 2 I 10
s xenTro7.KB022020                 30912 10 -     78772 ------------------GTATGTGAGT-----------------
i xenTro7.KB022020             C 0 I 2
s latCha1.JH131426                 58064 18 +     59601 Acttaaagtcac----------aaggga-----------------
i latCha1.JH131426             C 0 C 0
s hapBur1.JH425491                251788 19 -   1273513 ------------------tggaatgagt--------gagtgaggt
i hapBur1.JH425491             C 0 C 0
s oryLat2.chr4                  28408597 18 -  34636364 ------------------ATGTATGTGT--------TAGT-ATAC
i oryLat2.chr4                 C 0 C 0
s danRer10.chr3                  6753013 26 +  62385949 ------------------AAGAAAGTGTATGTGATGGAGT-GTGT
i danRer10.chr3                C 0 C 0
s astMex1.KB871645                368518 18 -   1180455 ------------------ACgcaaatgc--------taat-gcgt
i astMex1.KB871645             C 0 C 0
s lepOcu1.chrUn_JH591782            9344 18 -     15061 ------------------gaaaaagtac--------gagt-gGAT
i lepOcu1.chrUn_JH591782       C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e felCat8.chrA3                134108711 5116 + 140925898 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120649                 20393  0 -    165821 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764               846  2 -      1397 I
e apaSpi1.KB929605                579464  4 +   1015623 I
e pelSin1.JH207189               1424414  7 +   1874153 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530533585 5218 + 748055161 I
e dasNov3.JH567436               1035680  0 -   2788317 C
e loxAfr3.scaffold_20           27621764  0 -  46401353 C
e cerSim1.JH767782               6811574 4566 -  14545593 I
e orcOrc1.KB316907              10843903 4321 +  17242564 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=831.000000
s hg38.chr8_KI270814v1_alt         87853 1 +    141812 A
s ponAbe2.chr8                  59057389 1 + 153482349 A
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48136048 1 + 100215132 A
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99343166 1 + 108792865 g
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24009459 1 +  27210278 g
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21191756 1 -  23169006 G
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19214405 1 -  22931326 G
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2808321 1 -   6207710 G
i camFer1.KB017763             C 0 C 0
s equCab2.chr15                 84038091 1 +  91571448 A
i equCab2.chr15                C 0 I 4333
s canFam3.chr17                 57841605 1 -  64289059 G
i canFam3.chr17                C 0 I 8
s musFur1.GL896914              13613962 1 -  19722643 g
i musFur1.GL896914             C 0 I 8
s odoRosDiv1.KB229025            3037106 1 +   4816872 g
i odoRosDiv1.KB229025          C 0 I 6
s pteAle1.KB030580              19414390 1 -  23789964 G
i pteAle1.KB030580             C 0 C 0
s triMan1.JH594629               9969183 1 +  24341844 G
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1035680 1 -   2788317 g
i dasNov3.JH567436             C 0 C 0
s sarHar1.chr3_GL849915_random   3907176 1 +   4730170 G
i sarHar1.chr3_GL849915_random C 0 I 2
s ornAna1.Contig53964                295 1 -      2070 T
i ornAna1.Contig53964          C 0 I 2
s geoFor1.JH740018               1736356 1 +   2102797 A
i geoFor1.JH740018             I 27 C 0
s taeGut2.chr18                  2063634 1 -  11201131 A
i taeGut2.chr18                I 20 C 0
s pseHum1.KB221220               3809231 1 +   7268516 A
i pseHum1.KB221220             I 30 C 0
s melGal1.chr7                  34310095 1 -  38723565 A
i melGal1.chr7                 I 14 C 0
s cheMyd1.KB605988                134190 1 +    155857 C
i cheMyd1.KB605988             I 8 C 0
s chrPic2.chrUn_KK083223v1        104762 1 +    779542 C
i chrPic2.chrUn_KK083223v1     I 10 C 0
s xenTro7.KB022020                 30924 1 -     78772 G
i xenTro7.KB022020             I 2 C 0
s latCha1.JH131426                 58082 1 +     59601 a
i latCha1.JH131426             C 0 C 0
s hapBur1.JH425491                251807 1 -   1273513 a
i hapBur1.JH425491             C 0 C 0
s oryLat2.chr4                  28408615 1 -  34636364 A
i oryLat2.chr4                 C 0 C 0
s danRer10.chr3                  6753039 1 +  62385949 A
i danRer10.chr3                C 0 C 0
s astMex1.KB871645                368536 1 -   1180455 a
i astMex1.KB871645             C 0 C 0
s lepOcu1.chrUn_JH591782            9362 1 -     15061 A
i lepOcu1.chrUn_JH591782       C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e felCat8.chrA3                134108711 5116 + 140925898 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120649                 20393 0 -    165821 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH737491                498225 2 -    628740 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764               846 2 -      1397 I
e apaSpi1.KB929605                579464 4 +   1015623 I
e pelSin1.JH207189               1424414 7 +   1874153 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530533585 5218 + 748055161 I
e loxAfr3.scaffold_20           27621764 0 -  46401353 C
e cerSim1.JH767782               6811574 4566 -  14545593 I
e orcOrc1.KB316907              10843903 4321 +  17242564 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=1328.000000
s hg38.chr8_KI270814v1_alt         87854 2 +    141812 GG
s ponAbe2.chr8                  59057390 2 + 153482349 GG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48136049 2 + 100215132 GG
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99343167 2 + 108792865 tg
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24009460 2 +  27210278 tg
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21191757 2 -  23169006 TG
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19214406 2 -  22931326 GG
i vicPac2.KB632437             C 0 I 4
s camFer1.KB017763               2808322 2 -   6207710 GG
i camFer1.KB017763             C 0 I 4105
s canFam3.chr17                 57841614 2 -  64289059 GG
i canFam3.chr17                I 8 C 0
s musFur1.GL896914              13613971 2 -  19722643 gg
i musFur1.GL896914             I 8 C 0
s odoRosDiv1.KB229025            3037113 1 +   4816872 -g
i odoRosDiv1.KB229025          I 6 C 0
s pteAle1.KB030580              19414391 2 -  23789964 TG
i pteAle1.KB030580             C 0 C 0
s triMan1.JH594629               9969184 2 +  24341844 TG
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1035681 2 -   2788317 tg
i dasNov3.JH567436             C 0 C 0
s sarHar1.chr3_GL849915_random   3907179 2 +   4730170 CA
i sarHar1.chr3_GL849915_random I 2 C 0
s ornAna1.Contig53964                298 2 -      2070 GG
i ornAna1.Contig53964          I 2 C 0
s geoFor1.JH740018               1736357 2 +   2102797 TT
i geoFor1.JH740018             C 0 C 0
s taeGut2.chr18                  2063635 2 -  11201131 TT
i taeGut2.chr18                C 0 C 0
s pseHum1.KB221220               3809232 2 +   7268516 TT
i pseHum1.KB221220             C 0 C 0
s melGal1.chr7                  34310096 2 -  38723565 AG
i melGal1.chr7                 C 0 C 0
s cheMyd1.KB605988                134191 2 +    155857 TG
i cheMyd1.KB605988             C 0 C 0
s chrPic2.chrUn_KK083223v1        104763 2 +    779542 CG
i chrPic2.chrUn_KK083223v1     C 0 C 0
s xenTro7.KB022020                 30925 2 -     78772 TG
i xenTro7.KB022020             C 0 C 0
s latCha1.JH131426                 58083 2 +     59601 tg
i latCha1.JH131426             C 0 C 0
s hapBur1.JH425491                251808 2 -   1273513 gg
i hapBur1.JH425491             C 0 C 0
s oryLat2.chr4                  28408616 2 -  34636364 GG
i oryLat2.chr4                 C 0 C 0
s danRer10.chr3                  6753040 2 +  62385949 TA
i danRer10.chr3                C 0 C 0
s astMex1.KB871645                368537 2 -   1180455 aa
i astMex1.KB871645             C 0 C 0
s lepOcu1.chrUn_JH591782            9363 2 -     15061 AG
i lepOcu1.chrUn_JH591782       C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e felCat8.chrA3                134108711 5116 + 140925898 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120649                 20393 0 -    165821 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH737491                498225 2 -    628740 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764               846 2 -      1397 I
e apaSpi1.KB929605                579464 4 +   1015623 I
e pelSin1.JH207189               1424414 7 +   1874153 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530533585 5218 + 748055161 I
e equCab2.chr15                 84038092 4333 +  91571448 I
e loxAfr3.scaffold_20           27621764 0 -  46401353 C
e cerSim1.JH767782               6811574 4566 -  14545593 I
e orcOrc1.KB316907              10843903 4321 +  17242564 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=16079.000000
s hg38.chr8_KI270814v1_alt         87856 2 +    141812 TA
s ponAbe2.chr8                  59057392 2 + 153482349 TA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48136051 2 + 100215132 TA
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99343169 2 + 108792865 ta
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24009462 2 +  27210278 ta
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21191759 2 -  23169006 TG
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19214412 2 -  22931326 TA
i vicPac2.KB632437             I 4 I 4051
s canFam3.chr17                 57841616 2 -  64289059 TA
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13613973 2 -  19722643 tg
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3037114 2 +   4816872 tg
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19414393 2 -  23789964 TT
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27621764 2 -  46401353 tg
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9969186 2 +  24341844 TG
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1035683 2 -   2788317 tg
i dasNov3.JH567436             C 0 C 0
s sarHar1.chr3_GL849915_random   3907181 2 +   4730170 TG
i sarHar1.chr3_GL849915_random C 0 C 0
s ornAna1.Contig53964                300 1 -      2070 -A
i ornAna1.Contig53964          C 0 I 1
s geoFor1.JH740018               1736359 1 +   2102797 -G
i geoFor1.JH740018             C 0 I 1
s taeGut2.chr18                  2063637 1 -  11201131 -A
i taeGut2.chr18                C 0 I 1
s pseHum1.KB221220               3809234 1 +   7268516 -A
i pseHum1.KB221220             C 0 I 1
s melGal1.chr7                  34310098 1 -  38723565 -A
i melGal1.chr7                 C 0 I 1
s cheMyd1.KB605988                134193 1 +    155857 -C
i cheMyd1.KB605988             C 0 I 1
s chrPic2.chrUn_KK083223v1        104765 1 +    779542 -G
i chrPic2.chrUn_KK083223v1     C 0 I 1
s xenTro7.KB022020                 30927 2 -     78772 TA
i xenTro7.KB022020             C 0 C 0
s latCha1.JH131426                 58085 2 +     59601 TG
i latCha1.JH131426             C 0 C 0
s hapBur1.JH425491                251810 2 -   1273513 ga
i hapBur1.JH425491             C 0 C 0
s oryLat2.chr4                  28408618 2 -  34636364 TA
i oryLat2.chr4                 C 0 C 0
s danRer10.chr3                  6753042 2 +  62385949 TG
i danRer10.chr3                C 0 C 0
s astMex1.KB871645                368539 2 -   1180455 tg
i astMex1.KB871645             C 0 C 0
s lepOcu1.chrUn_JH591782            9365 2 -     15061 TG
i lepOcu1.chrUn_JH591782       C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e camFer1.KB017763               2808324 4105 -   6207710 I
e felCat8.chrA3                134108711 5116 + 140925898 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120649                 20393 0 -    165821 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH737491                498225 2 -    628740 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764               846 2 -      1397 I
e apaSpi1.KB929605                579464 4 +   1015623 I
e pelSin1.JH207189               1424414 7 +   1874153 I
e melUnd1.JH556589               7680049 6397 -   7952740 T
e monDom5.chr1                 530533585 5218 + 748055161 I
e equCab2.chr15                 84038092 4333 +  91571448 I
e cerSim1.JH767782               6811574 4566 -  14545593 I
e orcOrc1.KB316907              10843903 4321 +  17242564 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-89177.000000
s hg38.chr8_KI270814v1_alt         87858 1 +    141812 -------C
s ponAbe2.chr8                  59057394 1 + 153482349 -------C
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48136053 1 + 100215132 -------C
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99343171 1 + 108792865 -------c
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24009464 1 +  27210278 -------c
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21191761 1 -  23169006 -------A
i otoGar3.GL873541             C 0 C 0
s loxAfr3.scaffold_20           27621766 1 -  46401353 -------c
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9969188 1 +  24341844 -------C
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1035685 1 -   2788317 -------t
i dasNov3.JH567436             C 0 C 0
s sarHar1.chr3_GL849915_random   3907183 1 +   4730170 -------A
i sarHar1.chr3_GL849915_random C 0 C 0
s ornAna1.Contig53964                302 1 -      2070 -------A
i ornAna1.Contig53964          I 1 C 0
s geoFor1.JH740018               1736361 1 +   2102797 -------T
i geoFor1.JH740018             I 1 C 0
s taeGut2.chr18                  2063639 1 -  11201131 -------T
i taeGut2.chr18                I 1 C 0
s pseHum1.KB221220               3809236 1 +   7268516 -------C
i pseHum1.KB221220             I 1 C 0
s melUnd1.JH556573                751381 1 +  10614383 -------T
i melUnd1.JH556573             n 6397 C 0
s melGal1.chr7                  34310100 1 -  38723565 -------C
i melGal1.chr7                 I 1 C 0
s cheMyd1.KB605988                134195 1 +    155857 -------C
i cheMyd1.KB605988             I 1 C 0
s chrPic2.chrUn_KK083223v1        104767 1 +    779542 -------T
i chrPic2.chrUn_KK083223v1     I 1 C 0
s pelSin1.JH207189               1424421 1 +   1874153 -------T
i pelSin1.JH207189             I 7 C 0
s apaSpi1.KB929605                579468 1 +   1015623 -------t
i apaSpi1.KB929605             I 4 C 0
s hapBur1.JH425491                251812 6 -   1273513 g--aagga
i hapBur1.JH425491             C 0 C 0
s oryLat2.chr4                  28408620 5 -  34636364 T--AA-AA
i oryLat2.chr4                 C 0 C 0
s danRer10.chr3                  6753044 7 +  62385949 TGAGA-AA
i danRer10.chr3                C 0 C 0
s astMex1.KB871645                368541 5 -   1180455 T--GA-AT
i astMex1.KB871645             C 0 C 0
s lepOcu1.chrUn_JH591782            9367 5 -     15061 T--GC-GA
i lepOcu1.chrUn_JH591782       C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e musFur1.GL896914              13613975 0 -  19722643 C
e vicPac2.KB632437              19214414 4051 -  22931326 I
e camFer1.KB017763               2808324 4105 -   6207710 I
e odoRosDiv1.KB229025            3037116 0 +   4816872 C
e canFam3.chr17                 57841618 0 -  64289059 C
e felCat8.chrA3                134108711 5116 + 140925898 I
e xenTro7.KB022020                 30929 0 -     78772 C
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE120649                 20393 0 -    165821 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH737491                498225 2 -    628740 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e anaPla1.KB742696               1254472 0 -   1270250 I
e latCha1.JH131426                 58087 0 +     59601 C
e amaVit1.AOCU01222764               846 2 -      1397 I
e monDom5.chr1                 530533585 5218 + 748055161 I
e equCab2.chr15                 84038092 4333 +  91571448 I
e pteAle1.KB030580              19414395 0 -  23789964 C
e cerSim1.JH767782               6811574 4566 -  14545593 I
e orcOrc1.KB316907              10843903 4321 +  17242564 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-19405.000000
s hg38.chr8_KI270814v1_alt         87859  9 +    141812 GTGT--GATTG
s ponAbe2.chr8                  59057395  9 + 153482349 Atgt--gattg
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48136054  9 + 100215132 ATGT--GATTG
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99343172  9 + 108792865 aagt--gagtg
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24009465  5 +  27210278 ------gagtg
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21191762 11 -  23169006 CTGTCGGCTTG
i otoGar3.GL873541             C 0 C 0
s loxAfr3.scaffold_20           27621767  9 -  46401353 gtgt--gtgtg
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9969189  9 +  24341844 TTGT--GTGTG
i triMan1.JH594629             C 0 I 5212
s dasNov3.JH567436               1035686  9 -   2788317 atgt--gtgtg
i dasNov3.JH567436             C 0 I 3
s monDom5.chrX                  12913995  9 -  79335909 ATGT--GATAC
i monDom5.chrX                 n 5218 C 0
s sarHar1.chr3_GL849915_random   3907184  9 +   4730170 ATGc--gagtg
i sarHar1.chr3_GL849915_random C 0 C 0
s ornAna1.Contig53964                303  9 -      2070 GGGA--GAGTG
i ornAna1.Contig53964          C 0 C 0
s geoFor1.JH740018               1736362  9 +   2102797 GTGT--GAATT
i geoFor1.JH740018             C 0 C 0
s taeGut2.chr18                  2063640  7 -  11201131 GTGT--GCA--
i taeGut2.chr18                C 0 C 0
s pseHum1.KB221220               3809237  9 +   7268516 GTGT--ACATA
i pseHum1.KB221220             C 0 C 0
s melUnd1.JH556573                751382  9 +  10614383 GTGC--ATATG
i melUnd1.JH556573             C 0 C 0
s amaVit1.AOCU01222764               848  9 -      1397 GTGC--ACTTG
i amaVit1.AOCU01222764         I 2 C 0
s melGal1.chr7                  34310101  9 -  38723565 GTGT--AAGTG
i melGal1.chr7                 C 0 C 0
s cheMyd1.KB605988                134196  9 +    155857 GTGA--GGGCG
i cheMyd1.KB605988             C 0 C 0
s chrPic2.chrUn_KK083223v1        104768  9 +    779542 TTGT--GAGTG
i chrPic2.chrUn_KK083223v1     C 0 C 0
s pelSin1.JH207189               1424422  9 +   1874153 GCGA--GGGTG
i pelSin1.JH207189             C 0 C 0
s apaSpi1.KB929605                579469  9 +   1015623 gtat--gtgta
i apaSpi1.KB929605             C 0 C 0
s xenTro7.KB022020                 30929  8 -     78772 -TGT--GTGTG
i xenTro7.KB022020             C 0 C 0
s latCha1.JH131426                 58087  8 +     59601 -AGT--GCATG
i latCha1.JH131426             C 0 I 17
s hapBur1.JH425491                251818  5 -   1273513 gaaa--g----
i hapBur1.JH425491             C 0 C 0
s oryLat2.chr4                  28408625  5 -  34636364 CACA--G----
i oryLat2.chr4                 C 0 C 0
s danRer10.chr3                  6753051  5 +  62385949 gtgt--g----
i danRer10.chr3                C 0 C 0
s astMex1.KB871645                368546  5 -   1180455 gcgt--g----
i astMex1.KB871645             C 0 C 0
s lepOcu1.chrUn_JH591782            9372  5 -     15061 GTGT--A----
i lepOcu1.chrUn_JH591782       C 0 C 0
s petMar2.GL480054                 25454  9 -     29607 GTGT--GATTA
i petMar2.GL480054             N 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e musFur1.GL896914              13613975  0 -  19722643 C
e vicPac2.KB632437              19214414 4051 -  22931326 I
e camFer1.KB017763               2808324 4105 -   6207710 I
e odoRosDiv1.KB229025            3037116  0 +   4816872 C
e canFam3.chr17                 57841618  0 -  64289059 C
e felCat8.chrA3                134108711 5116 + 140925898 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120649                 20393  0 -    165821 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH737491                498225  2 -    628740 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e anaPla1.KB742696               1254472  0 -   1270250 I
e equCab2.chr15                 84038092 4333 +  91571448 I
e pteAle1.KB030580              19414395  0 -  23789964 C
e cerSim1.JH767782               6811574 4566 -  14545593 I
e orcOrc1.KB316907              10843903 4321 +  17242564 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-58109.000000
s hg38.chr8_KI270814v1_alt         87868 11 +    141812 TGTATGAC-------------TGT
s ponAbe2.chr8                  59057404 11 + 153482349 tgtatgac-------------tgt
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48136063 13 + 100215132 TGTATGACTG-----------TGT
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99343181 24 + 108792865 tgtatgactgagggtgggtaaggt
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24009470 24 +  27210278 tgtatgactgagggtgtgtaaggt
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21191773 11 -  23169006 AGTATAAG-------------GGC
i otoGar3.GL873541             C 0 C 0
s canFam3.chr17                 57841618 10 -  64289059 TATGTGAG--------------AT
i canFam3.chr17                C 0 I 5
s musFur1.GL896914              13613975 10 -  19722643 tatatggg--------------ac
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3037116  5 +   4816872 tgtgt-------------------
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19414395 13 -  23789964 TGTGTGAGTG-----------TGT
i pteAle1.KB030580             C 0 I 8
s loxAfr3.scaffold_20           27621776 11 -  46401353 tgcgtgtc-------------cgt
i loxAfr3.scaffold_20          C 0 C 0
s dasNov3.JH567436               1035698 11 -   2788317 tgtatatg-------------tgt
i dasNov3.JH567436             I 3 C 0
s monDom5.chrX                  12914004 11 -  79335909 TGTGCAAG-------------CAT
i monDom5.chrX                 C 0 C 0
s sarHar1.chr3_GL849915_random   3907193 11 +   4730170 tgtatgag-------------tgt
i sarHar1.chr3_GL849915_random C 0 C 0
s ornAna1.Contig53964                312 10 -      2070 CACATGGG--------------AG
i ornAna1.Contig53964          C 0 C 0
s geoFor1.JH740018               1736371 11 +   2102797 CATGGATT-------------TGT
i geoFor1.JH740018             C 0 C 0
s taeGut2.chr18                  2063647 11 -  11201131 AATGAGAG-------------CGT
i taeGut2.chr18                C 0 C 0
s pseHum1.KB221220               3809246 11 +   7268516 AATGTCAA-------------TGT
i pseHum1.KB221220             C 0 C 0
s melUnd1.JH556573                751391 11 +  10614383 GATCTGAG-------------TAT
i melUnd1.JH556573             C 0 C 0
s amaVit1.AOCU01222764               857 11 -      1397 TGTACGGG-------------TGC
i amaVit1.AOCU01222764         C 0 C 0
s melGal1.chr7                  34310110 11 -  38723565 TGCAACAG-------------TGT
i melGal1.chr7                 C 0 C 0
s allMis1.JH737491                498227  2 -    628740 ----------------------GT
i allMis1.JH737491             I 2 C 0
s cheMyd1.KB605988                134205 11 +    155857 TGTATCAG-------------TGT
i cheMyd1.KB605988             C 0 C 0
s chrPic2.chrUn_KK083223v1        104777 11 +    779542 TGTATGAA-------------TGT
i chrPic2.chrUn_KK083223v1     C 0 C 0
s pelSin1.JH207189               1424431 11 +   1874153 CGCACAGG-------------TAC
i pelSin1.JH207189             C 0 C 0
s apaSpi1.KB929605                579478 11 +   1015623 tgtatggg-------------tgg
i apaSpi1.KB929605             C 0 C 0
s xenTro7.KB022020                 30937 11 -     78772 TGTATGTA-------------TGT
i xenTro7.KB022020             C 0 C 0
s latCha1.JH131426                 58112 11 +     59601 TGAAAGAA-------------TGT
i latCha1.JH131426             I 17 C 0
s hapBur1.JH425491                251823 11 -   1273513 agagtgac-------------tga
i hapBur1.JH425491             C 0 I 2
s oryLat2.chr4                  28408630 11 -  34636364 CATGTGGG-------------TGT
i oryLat2.chr4                 C 0 I 12
s danRer10.chr3                  6753056 11 +  62385949 tgtgtgtg-------------tgt
i danRer10.chr3                C 0 I 14
s astMex1.KB871645                368551 11 -   1180455 tatgtgag-------------tgt
i astMex1.KB871645             C 0 I 14
s lepOcu1.chrUn_JH591782            9377  7 -     15061 TAAGTGT-----------------
i lepOcu1.chrUn_JH591782       C 0 I 16
s petMar2.GL480054                 25463 11 -     29607 TGTCCGAG-------------TGT
i petMar2.GL480054             C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e vicPac2.KB632437              19214414 4051 -  22931326 I
e camFer1.KB017763               2808324 4105 -   6207710 I
e felCat8.chrA3                134108711 5116 + 140925898 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE120649                 20393  0 -    165821 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e anaPla1.KB742696               1254472  0 -   1270250 I
e equCab2.chr15                 84038092 4333 +  91571448 I
e triMan1.JH594629               9969198 5212 +  24341844 I
e cerSim1.JH767782               6811574 4566 -  14545593 I
e orcOrc1.KB316907              10843903 4321 +  17242564 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=109823.000000
s hg38.chr8_KI270814v1_alt         87879 12 +    141812 G--------TGTGTGTA----T--GT----
s ponAbe2.chr8                  59057415 12 + 153482349 g--------tgtgtgtg----t--at----
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48136076 12 + 100215132 G--------TGTGTGTG----T--GT----
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99343205 12 + 108792865 g--------tgcttgta----t--gt----
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24009494 16 +  27210278 g--------tgcttgtatgact--gt----
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21191784 12 -  23169006 G--------TGAGAGTA----G--GT----
i otoGar3.GL873541             C 0 C 0
s canFam3.chr17                 57841633 12 -  64289059 G--------TGTGTGTG----T--GT----
i canFam3.chr17                I 5 C 0
s musFur1.GL896914              13613985 12 -  19722643 g--------tgtgtgtg----t--gt----
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3037121 12 +   4816872 g--------tgtgtgtg----t--gt----
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19414416 12 -  23789964 G--------TGTGTGTG----T--GT----
i pteAle1.KB030580             I 8 C 0
s loxAfr3.scaffold_20           27621787 12 -  46401353 g--------tgcgtgta----a--gt----
i loxAfr3.scaffold_20          C 0 C 0
s dasNov3.JH567436               1035709 12 -   2788317 g--------tttgtgtg----t--AT----
i dasNov3.JH567436             C 0 I 4147
s monDom5.chrX                  12914015 12 -  79335909 G--------TGAGAGTG----T--AT----
i monDom5.chrX                 C 0 I 2
s sarHar1.chr3_GL849915_random   3907204 20 +   4730170 gtgcataaatgagtgtg----t--at----
i sarHar1.chr3_GL849915_random C 0 I 2
s ornAna1.Contig53964                322 12 -      2070 G--------TGGGTGTG----C--AT----
i ornAna1.Contig53964          C 0 I 4
s geoFor1.JH740018               1736382 12 +   2102797 G--------TGTGAATC----C--AT----
i geoFor1.JH740018             C 0 C 0
s taeGut2.chr18                  2063658 12 -  11201131 G--------AATGAATG----T--GT----
i taeGut2.chr18                C 0 C 0
s pseHum1.KB221220               3809257 12 +   7268516 G--------AGTGTATT----A--AC----
i pseHum1.KB221220             C 0 C 0
s melUnd1.JH556573                751402 12 +  10614383 G--------TGTGCACG----T--AT----
i melUnd1.JH556573             C 0 C 0
s amaVit1.AOCU01222764               868 12 -      1397 A--------TGGGTATA----C--GG----
i amaVit1.AOCU01222764         C 0 C 0
s melGal1.chr7                  34310121 12 -  38723565 G--------TAAGAGCA----T--GC----
i melGal1.chr7                 C 0 C 0
s allMis1.JH737491                498229 12 -    628740 G--------TGTGATGG----A--TT----
i allMis1.JH737491             C 0 C 0
s cheMyd1.KB605988                134216 14 +    155857 G--------TGGCGATG----TCGGC----
i cheMyd1.KB605988             C 0 C 0
s chrPic2.chrUn_KK083223v1        104788 10 +    779542 G--------AGCGAGTG----T--------
i chrPic2.chrUn_KK083223v1     C 0 C 0
s pelSin1.JH207189               1424442 12 +   1874153 G--------TGTTTGCG----G--GT----
i pelSin1.JH207189             C 0 C 0
s apaSpi1.KB929605                579489 12 +   1015623 g--------tgtatgtg----t--gt----
i apaSpi1.KB929605             C 0 C 0
s xenTro7.KB022020                 30948 12 -     78772 G--------TTTGTGTA----T--GT----
i xenTro7.KB022020             C 0 I 2
s latCha1.JH131426                 58123 12 +     59601 G--------TGTAGGCA----T--GT----
i latCha1.JH131426             C 0 C 0
s takFla1.AOOT01113665                 3 12 +       323 G--------TGTGTGTC----T--GT----
i takFla1.AOOT01113665         n 0 C 0
s hapBur1.JH425491                251836 12 -   1273513 g--------aatgagta----a--gt----
i hapBur1.JH425491             I 2 C 0
s oryLat2.chr4                  28408653 12 -  34636364 G--------TGCGAGCA----T--GC----
i oryLat2.chr4                 I 12 C 0
s danRer10.chr3                  6753081 12 +  62385949 g--------tgtgtgtg----t--gt----
i danRer10.chr3                I 14 C 0
s astMex1.KB871645                368576 12 -   1180455 G--------TAAGTGCA----T--GT----
i astMex1.KB871645             I 14 C 0
s lepOcu1.chrUn_JH591782            9400 12 -     15061 G--------TGCGAGTG----T--TT----
i lepOcu1.chrUn_JH591782       I 16 C 0
s petMar2.GL480054                 25474 12 -     29607 ------------GATTG----T--ACCCGA
i petMar2.GL480054             C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e vicPac2.KB632437              19214414 4051 -  22931326 I
e camFer1.KB017763               2808324 4105 -   6207710 I
e felCat8.chrA3                134108711 5116 + 140925898 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e anaPla1.KB742696               1254472  0 -   1270250 I
e equCab2.chr15                 84038092 4333 +  91571448 I
e triMan1.JH594629               9969198 5212 +  24341844 I
e cerSim1.JH767782               6811574 4566 -  14545593 I
e orcOrc1.KB316907              10843903 4321 +  17242564 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=56914.000000
s hg38.chr8_KI270814v1_alt         87891 3 +    141812 GTG
s ponAbe2.chr8                  59057427 3 + 153482349 gtg
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48136088 3 + 100215132 GTG
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99343217 3 + 108792865 gtg
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24009510 3 +  27210278 gtg
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21191796 3 -  23169006 GTG
i otoGar3.GL873541             C 0 C 0
s canFam3.chr17                 57841645 3 -  64289059 GTG
i canFam3.chr17                C 0 I 1
s musFur1.GL896914              13613997 3 -  19722643 gtg
i musFur1.GL896914             C 0 I 4726
s odoRosDiv1.KB229025            3037133 3 +   4816872 gtg
i odoRosDiv1.KB229025          C 0 I 2
s pteAle1.KB030580              19414428 3 -  23789964 GTG
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27621799 3 -  46401353 gtg
i loxAfr3.scaffold_20          C 0 C 0
s monDom5.chrX                  12914029 3 -  79335909 GTG
i monDom5.chrX                 I 2 C 0
s sarHar1.chr3_GL849915_random   3907226 3 +   4730170 gta
i sarHar1.chr3_GL849915_random I 2 C 0
s ornAna1.Contig53964                338 3 -      2070 GAG
i ornAna1.Contig53964          I 4 C 0
s geoFor1.JH740018               1736394 3 +   2102797 GGA
i geoFor1.JH740018             C 0 C 0
s taeGut2.chr18                  2063670 3 -  11201131 TTG
i taeGut2.chr18                C 0 C 0
s pseHum1.KB221220               3809269 3 +   7268516 ATG
i pseHum1.KB221220             C 0 C 0
s melUnd1.JH556573                751414 3 +  10614383 GTT
i melUnd1.JH556573             C 0 C 0
s amaVit1.AOCU01222764               880 3 -      1397 GTG
i amaVit1.AOCU01222764         C 0 C 0
s melGal1.chr7                  34310133 3 -  38723565 AAA
i melGal1.chr7                 C 0 C 0
s allMis1.JH737491                498241 3 -    628740 GTG
i allMis1.JH737491             C 0 C 0
s cheMyd1.KB605988                134230 3 +    155857 GCC
i cheMyd1.KB605988             C 0 C 0
s chrPic2.chrUn_KK083223v1        104798 3 +    779542 GTT
i chrPic2.chrUn_KK083223v1     C 0 C 0
s pelSin1.JH207189               1424454 3 +   1874153 GTG
i pelSin1.JH207189             C 0 C 0
s apaSpi1.KB929605                579501 3 +   1015623 gtc
i apaSpi1.KB929605             C 0 C 0
s xenTro7.KB022020                 30962 3 -     78772 GTG
i xenTro7.KB022020             I 2 C 0
s latCha1.JH131426                 58135 3 +     59601 GTG
i latCha1.JH131426             C 0 C 0
s takFla1.AOOT01113665                15 3 +       323 GCG
i takFla1.AOOT01113665         C 0 C 0
s hapBur1.JH425491                251848 3 -   1273513 gag
i hapBur1.JH425491             C 0 C 0
s oryLat2.chr4                  28408665 3 -  34636364 ATG
i oryLat2.chr4                 C 0 C 0
s danRer10.chr3                  6753093 3 +  62385949 gtg
i danRer10.chr3                C 0 C 0
s astMex1.KB871645                368588 3 -   1180455 ACA
i astMex1.KB871645             C 0 C 0
s lepOcu1.chrUn_JH591782            9412 3 -     15061 GAA
i lepOcu1.chrUn_JH591782       C 0 C 0
s petMar2.GL480054                 25486 3 -     29607 GTG
i petMar2.GL480054             C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e vicPac2.KB632437              19214414 4051 -  22931326 I
e camFer1.KB017763               2808324 4105 -   6207710 I
e felCat8.chrA3                134108711 5116 + 140925898 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e anaPla1.KB742696               1254472 0 -   1270250 I
e dasNov3.JH567436               1035721 4147 -   2788317 I
e equCab2.chr15                 84038092 4333 +  91571448 I
e triMan1.JH594629               9969198 5212 +  24341844 I
e cerSim1.JH767782               6811574 4566 -  14545593 I
e orcOrc1.KB316907              10843903 4321 +  17242564 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=40893.000000
s hg38.chr8_KI270814v1_alt         87894 9 +    141812 CGTAAGTAT
s ponAbe2.chr8                  59057430 9 + 153482349 cttaagtat
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48136091 9 + 100215132 CTTAAGTAT
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99343220 9 + 108792865 cttgagtat
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24009513 9 +  27210278 cttgagtat
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21191799 4 -  23169006 -----GGGT
i otoGar3.GL873541             C 0 C 0
s canFam3.chr17                 57841649 9 -  64289059 TGCACGTAT
i canFam3.chr17                I 1 C 0
s odoRosDiv1.KB229025            3037138 9 +   4816872 tgtgtgtgt
i odoRosDiv1.KB229025          I 2 I 4279
s pteAle1.KB030580              19414431 9 -  23789964 GGTGAGTGT
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27621802 9 -  46401353 tgtgtgtgt
i loxAfr3.scaffold_20          C 0 I 6071
s monDom5.chrX                  12914032 9 -  79335909 CGCAAGTGT
i monDom5.chrX                 C 0 I 8
s sarHar1.chr3_GL849915_random   3907229 9 +   4730170 tgcatgagt
i sarHar1.chr3_GL849915_random C 0 I 9
s ornAna1.Contig53964                341 9 -      2070 AGAAAGTGT
i ornAna1.Contig53964          C 0 C 0
s geoFor1.JH740018               1736397 9 +   2102797 TTGGTGTGT
i geoFor1.JH740018             C 0 C 0
s taeGut2.chr18                  2063673 9 -  11201131 TTAATGTGT
i taeGut2.chr18                C 0 C 0
s pseHum1.KB221220               3809272 9 +   7268516 TACATAAAT
i pseHum1.KB221220             C 0 C 0
s melUnd1.JH556573                751417 9 +  10614383 TGCGCAAGT
i melUnd1.JH556573             C 0 C 0
s amaVit1.AOCU01222764               883 9 -      1397 CATAGATAC
i amaVit1.AOCU01222764         C 0 C 0
s melGal1.chr7                  34310136 9 -  38723565 CGCATGTAA
i melGal1.chr7                 C 0 C 0
s allMis1.JH737491                498244 9 -    628740 TACGTGTTT
i allMis1.JH737491             C 0 C 0
s cheMyd1.KB605988                134233 9 +    155857 TGCACGTGA
i cheMyd1.KB605988             C 0 C 0
s chrPic2.chrUn_KK083223v1        104801 9 +    779542 TGCACGTGT
i chrPic2.chrUn_KK083223v1     C 0 C 0
s pelSin1.JH207189               1424457 9 +   1874153 TGAGCATAG
i pelSin1.JH207189             C 0 C 0
s apaSpi1.KB929605                579504 9 +   1015623 aggatatgt
i apaSpi1.KB929605             C 0 C 0
s xenTro7.KB022020                 30965 9 -     78772 TGTATGTAT
i xenTro7.KB022020             C 0 C 0
s latCha1.JH131426                 58138 9 +     59601 CGAACATAA
i latCha1.JH131426             C 0 C 0
s takFla1.AOOT01113665                18 9 +       323 TGAGTGTAT
i takFla1.AOOT01113665         C 0 I 8
s hapBur1.JH425491                251851 9 -   1273513 ttagtgagt
i hapBur1.JH425491             C 0 I 9
s oryLat2.chr4                  28408668 9 -  34636364 TCTATGAGT
i oryLat2.chr4                 C 0 I 6
s danRer10.chr3                  6753096 9 +  62385949 tgAGTATAT
i danRer10.chr3                C 0 I 8
s astMex1.KB871645                368591 9 -   1180455 TGAGTGCTT
i astMex1.KB871645             C 0 I 2
s lepOcu1.chrUn_JH591782            9415 9 -     15061 TAAGTGTGT
i lepOcu1.chrUn_JH591782       C 0 I 8
s petMar2.GL480054                 25489 9 -     29607 TGATTGTAT
i petMar2.GL480054             C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e musFur1.GL896914              13614000 4726 -  19722643 I
e vicPac2.KB632437              19214414 4051 -  22931326 I
e camFer1.KB017763               2808324 4105 -   6207710 I
e felCat8.chrA3                134108711 5116 + 140925898 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e anaPla1.KB742696               1254472 0 -   1270250 I
e dasNov3.JH567436               1035721 4147 -   2788317 I
e equCab2.chr15                 84038092 4333 +  91571448 I
e triMan1.JH594629               9969198 5212 +  24341844 I
e cerSim1.JH767782               6811574 4566 -  14545593 I
e orcOrc1.KB316907              10843903 4321 +  17242564 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-958495.000000
s hg38.chr8_KI270814v1_alt         87903  75 +    141812 A------------AGA----------------TTGAG-GGTGT-GT----------------AAAGGGATAAGT------GACT--G--------------------------TGTGTA----G--------------T-TGTGTGCCT------------G----AGT------AT------GAGTGAA----------------------------TGCACACGAGGG
s ponAbe2.chr8                  59057439  77 + 153482349 a------------aga--------------gtgtgag-ggtgt-gt----------------aaaggggtaagt------gact--g--------------------------tgtgta----g--------------t-tgtgtgcct------------g----agt------at------gagtgaa----------------------------tgcacatgaggg
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48136100  77 + 100215132 A------------ACA--------------GTGTGAG-GGTGT-GT----------------AAAGGGGTAAGT------GACT--G--------------------------TGTGTA----G--------------T-TGTGTGCCT------------G----AGT------AT------GAGTGAA----------------------------TGCACATGATGG
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99343229  93 + 108792865 a------------aga--------------gtgaatg-catga-gt----------------gagggtgtgtgt------gaat--gtgggtacgagtg-at-----------tgtgca----g--------------g-tgtgtgAAG------------G----AAC------ATGT----AATtgtg----------------------------tgtgtctgagtg
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24009522  87 +  27210278 a------------aga--------------gtgaatg-catga-gt----------------gagggtgtgtat------gaat--gtggg----------------------tgtgta----g--------------g-tgtgtgaag------------g----agc------atgtgagcaactgtg----------------------------tgtgtttgagag
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21191803  74 -  23169006 G------------TGG--------------GTGTGAC-AGAGG-GT----------------GAGGGCGTCTGT------GACA--G--------------------------TGTGTG----G--------------TGGGTATGAAG------------G----A----------------GAAGGGT----------------------------TGCTCAGGAAGG
i otoGar3.GL873541             C 0 I 3938
s canFam3.chr17                 57841658  71 -  64289059 -------------TGG--------------GCACATGAAGTGT-G-------------------GGGTACATGT------GGTA--CA-------------------------TGTGAA----G--------------TGTATGTGGGA------------C----ATG------TG------GGgtgtg----------------------------tgtgtat-----
i canFam3.chr17                C 0 C 0
s pteAle1.KB030580              19414440  54 -  23789964 ----------------------------------GTG-AGTGT-GT------------------GGGTATGAGA------G--------------------------------TGTG-A----G--------------TGTGTGTGAGT------------G----A----------------GTGTGTG----------------------------TGTGAAT-----
i pteAle1.KB030580             C 0 C 0
s monDom5.chrX                  12914049  75 -  79335909 A------------TGA--------------GTATAAG-ACCAT-GT----------------GAGAGTGAGAGC------ATGT--G--------------------------TGTACA----A--------------A-TATGTGATT------------G----TGA------GT------GATCATG----------------------------CAAACATGTG--
i monDom5.chrX                 I 8 C 0
s sarHar1.chr3_GL849915_random   3907247  71 +   4730170 a------------tga--------------gtgtgca-tgagt-gt----------------gagtgtgtatga------atga--g--------------------------tgtacataaga--------------g-tgCACAAAT------------G----TGG------GT------------------------------------------ATGCATGAA--
i sarHar1.chr3_GL849915_random I 9 C 0
s ornAna1.Contig53964                350  96 -      2070 G------------AGA--------------GTGCGTG-TGTGA-GGCGGTGTGGATTTGAGAAAGGGTGTCAGT------GCAT--T--------------------------TATGAG----G--------------T-TGTGTGAATTTG---------G----GAA------AG------GAGTGAG----------------------------TGCACGTGGGGG
i ornAna1.Contig53964          C 0 I 2
s geoFor1.JH740018               1736406  59 +   2102797 G------------------------------TGAAAG-CATGG-AT----------------TGGTGTGTGAAT------CCAT--GGACT--------------------------------G--------------G-TGTGTGAAT------------------TC------AT------GGATTTG----------------------------TG----------
i geoFor1.JH740018             C 0 C 0
s taeGut2.chr18                  2063682  59 -  11201131 G------------CAA--------------ATGAGAG-AGTGA-AT----------------GAATGTGTTTAT------TAAT------------------------------------------------------G-TGTGCAAAT------------G----AGA------GT------GAATTGA----------------------------TG----------
i taeGut2.chr18                C 0 C 0
s pseHum1.KB221220               3809281  53 +   7268516 G------------TCA--------------ATGTGAG---TGT-AT----------------TAACGTGTAAAT------AAAT-----------------------------------------------------------GTCAAT------------G----TGA------GT------GTATTAA----------------------------TG----------
i pseHum1.KB221220             C 0 C 0
s melUnd1.JH556573                751426  55 +  10614383 A------------TAG--------------GTGAAGG-GGTGA-AC----------------------ATAGGT------GTGT--C------------------------------------T--------------G-TGCGTGCAT------------G----ACT------GT------GCATGTC----------------------------CG----------
i melUnd1.JH556573             C 0 C 0
s amaVit1.AOCU01222764               892  79 -      1397 A------------TGG--------------GTGTGTG-GGTGT-AC----------------TGGTGTACGGTT------GTAT--CGGCA----------------------TACGGTTG--T--------------A-TGAGTGTAT------------G----AGTACACAGGT------GTATGGT----------------------------TG----------
i amaVit1.AOCU01222764         C 0 C 0
s melGal1.chr7                  34310145  85 -  38723565 GAGACCGCAACAGTGT--------------GTAAGAG-CGTGT-AA----------------CCGTGTGTAAGA------GCGT--GCAGC----------------------AGTATGCA--A--------------G-AGCGTGTAA------------C----AGG------GT------CCAACAG----------------------------CG----------
i melGal1.chr7                 C 0 C 0
s allMis1.JH737491                498253  59 -    628740 G------------TGC--------------ACGTGAG-TTTTC-GG----------------TTGTGTGTATGT-------TAT---------------------------------------G--------------G-GATGTGTGT------------G----CGG------GT------GTGTCCA----------------------------TG----------
i allMis1.JH737491             C 0 C 0
s cheMyd1.KB605988                134242  71 +    155857 G------------GGC--------------GTGTATC-AGTGT-GT----------------GGCGATGTCGGC------GCCT--GCACG----------------------TGAGGG----C--------------G-TGTATCAGT------------G----TGT------GG------CGATGTC----------------------------GG----------
i cheMyd1.KB605988             C 0 C 0
s chrPic2.chrUn_KK083223v1        104810 105 +    779542 G------------TGCGTCAGTGGATCCGGGTTTGTG-AGTGT-GT----------------ATGAATGTGAGCGAGTGTGTTT--GCACG----------------------TGTGTG----CGTCAGTGGATCCGGG-TTTGTGAGT------------G----TGT------AT------GAATGTG----------------------------AG----------
i chrPic2.chrUn_KK083223v1     C 0 C 0
s pelSin1.JH207189               1424466  71 +   1874153 G------------TAA--------------GTGTGCG-AGGGT-GC----------------GCACAGGTACGT------GTTT--GCGGG----------------------TGTGTG----A--------------G-CATAGGTAA------------G----TGT------GC------GAGGGTG----------------------------CG----------
i pelSin1.JH207189             C 0 C 0
s apaSpi1.KB929605                579513  73 +   1015623 g------------tgg--------------atctatg-gatgt-at----------------gtgcatgtcggt------gggt--gtatg----------------------tgcgtgAC--A--------------G-GATGGGTGT------------A----TGT------AT------GAATGGG----------------------------TG----------
i apaSpi1.KB929605             C 0 C 0
s xenTro7.KB022020                 30974  69 -     78772 ------------------------------GTGTTTG-TGTGT-AT----------------GTGTATGTGAGT------GTGT--GTA------------------------TGTGTG----T--------------G-TGTGTGTAT------------G----GGA------GT------GTGTGTG----------------------------TGTGTA------
i xenTro7.KB022020             C 0 C 0
s latCha1.JH131426                 58147  80 +     59601 ----------------------------ATGAATGAA-AGCGA-GT----------------GAATGGGTGAGT------GACT--CAGGTGAATAACC-ATGCG--------CTTATG----A--------------G-TATGAGAAT------------G----TGT------GT------GGGTATG----------------------------------------
i latCha1.JH131426             C 0 C 0
s takFla1.AOOT01113665                35  69 +       323 G------------TGC--------------GTGTGTG-TGTCTGTG---------------CGTGAGTGTATGT------GGGT--G--------------------------TGTGTC----T--------------G-TGCGTGAGT------------G----TAT------GT------GGGTGTG----------------------------TG----------
i takFla1.AOOT01113665         I 8 C 0
s hapBur1.JH425491                251869  72 -   1273513 g------------tga--------------CTAAGGA-AGGGT-TA---------------TGTGATCATGTGT------GGTT--G--------------------------TGTGCC----A--------------T-CGAGTGAGT------------GCCATCGA------AT------GAGTGAG----------------------------GA----------
i hapBur1.JH425491             I 9 C 0
s oryLat2.chr4                  28408683  67 -  34636364 G------------TGG--------------ATGTAAA-AGTGT-TA----------------GAGAGTCTCTAT------GGGT--G--------------------------TGTGTC----A--------------G-AGTGTGTAG------------G----TTT------GA------GAGCATG----------------------------CA----------
i oryLat2.chr4                 I 6 C 0
s danRer10.chr3                  6753113  79 +  62385949 G------------TGA--------------GTGTGTG-TGTAT-GA----------------GAAAGAGAGAGT------GTGT--A--------------------------TGTGAT----A--------------A-AGAGAGTGTGTATAAATGAGAG----AAA------GT------GTGTGTG----------------------------TG----------
i danRer10.chr3                I 8 C 0
s astMex1.KB871645                368602  67 -   1180455 A------------TGC--------------GAGTGCA-TGTAT-GT----------------GAGAGTGTAAAT------GCGA--C--------------------------CGTGTT----C--------------A-CGTGAGTGT------------G----AAT------GC------GAGTGCA----------------------------TG----------
i astMex1.KB871645             I 2 C 0
s lepOcu1.chrUn_JH591782            9432  93 -     15061 GTATACGTATGTTTGA--------------ATAAGTG-TGTGT-GA----------------AAAAGTATGAGT------GAATAAG--------------------------TCTGTC----C--------------A-TGAATAAGTGTGCGAGTGTGAA----TAA------GT------TTGCGAG----------------------------TG----------
i lepOcu1.chrUn_JH591782       I 8 C 0
s petMar2.GL480054                 25498 119 -     29607 ----------------------------CCGAGTGTG-ATTAT-GT----------------CCGAGTGTGATT------GTAT--CCGAGTGTGATTGTATCCGAGTGTGATTATGTC----C--------------G-AGTGTGATT------------G----TAT------CC------GAGTGTGATGGTATCCGAGTGTGATTGCACCCGAGTG----------
i petMar2.GL480054             C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e musFur1.GL896914              13614000 4726 -  19722643 I
e vicPac2.KB632437              19214414 4051 -  22931326 I
e camFer1.KB017763               2808324 4105 -   6207710 I
e odoRosDiv1.KB229025            3037147 4279 +   4816872 I
e felCat8.chrA3                134108711 5116 + 140925898 I
e tetNig2.chr10                  6379385   0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382   0 -   6649201 I
e neoBri1.JH422308               3491820   0 -   5414369 I
e araMac1.AOUJ01470298               637   0 -       895 I
e fr3.HE591725                    289786   0 -    411779 I
e ficAlb2.chr2                 148476508   0 + 157563209 I
e anoCar2.chr1                 148577473   4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214   0 -  25666195 I
e falPer1.KB390952               2753956   0 -  18327016 I
e falChe1.KB397350               1707310   0 -   3649919 I
e macEug2.GL109592                105897   0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e anaPla1.KB742696               1254472   0 -   1270250 I
e dasNov3.JH567436               1035721 4147 -   2788317 I
e equCab2.chr15                 84038092 4333 +  91571448 I
e triMan1.JH594629               9969198 5212 +  24341844 I
e loxAfr3.scaffold_20           27621811 6071 -  46401353 I
e cerSim1.JH767782               6811574 4566 -  14545593 I
e orcOrc1.KB316907              10843903 4321 +  17242564 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-973183.000000
s hg38.chr8_KI270814v1_alt         87978 68 +    141812 ----------AGGAT------G--TGTGTGAGTAAATGT--------------AT----------G------------AGTGATT----------GTGT----ATGTGA---GTGTGT--GTA--------C--------------ATGGGTA--A---TGG--TGTGGC
s ponAbe2.chr8                  59057516 68 + 153482349 ----------aggat------g--tgtgtgagtaaatgt--------------at----------g------------agtgatt----------gtgt----atgcga---gtgtgt--gta--------c--------------atgggtA--A---TGG--TGTGGC
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48136177 68 + 100215132 ----------AGGAT------G--TGTGTGAGTAAATGT--------------AT----------G------------AGTGATT----------GTGT----ATGTGA---GTGTGT--GTA--------C--------------ATGGGTA--G---TGG--TGTGGC
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99343322 68 + 108792865 ----------tgagt------gcatgtgtgggtgtgagc--------------tg----------g------------ggtgagt----------gtgg----atgtga---ctgtgt--gca--------t--------------gtgagta------tgc--tatgg-
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24009609 70 +  27210278 ----------tttgt------g--tgtgtggatgtgagt--------------tg----------g------------ggtgagt----------gtgg----atgtga---ctgtgt--gaa--------t--------------gtgagtg--attctgc--tatgg-
i saiBol1.JH378126             C 0 C 0
s canFam3.chr17                 57841729 59 -  64289059 -----------gggt------g--tgtgtgtgtgcatgt---------------------------------------------t----------gtgt----gtatgAGGTGTGGGG--GCA--------T--------------ATGGGGG--A---TGT--AATG--
i canFam3.chr17                C 0 C 0
s pteAle1.KB030580              19414494 63 -  23789964 -----------AAGT------G--TGTGTGAGTGAGTGT----------------------------------------GTGAGT----------GTGT----GTGTGA---GTGTGT--GTT--------T--------------CTGGGAA--A---AGG--AGAGGC
i pteAle1.KB030580             C 0 I 4168
s monDom5.chrX                  12914124 62 -  79335909 ----------TGAGT------G-ATTTGTGAAGATCTGC--------------AT----------T------------AGCA---------------------Atgtgt---gagact--gtg--------t--------------atgagca--t---gtg--agtatg
i monDom5.chrX                 C 0 I 2
s sarHar1.chr3_GL849915_random   3907318 68 +   4730170 ----------TGAGT------G--TGCATAAGAGTGTGT--------------AT----------G------------AATGAGA----------GTGC----ATGTAT---GTGAAT--ATG--------C--------------ATGAGTA--T---TTG--TGTGAG
i sarHar1.chr3_GL849915_random C 0 I 2
s ornAna1.Contig53964                448 66 -      2070 ----------GGGGT------GCATTTGAGAGAGAAAGT--------------GT----------G------------AGAGTGC----------GTGT----GTGAGG---CGGTGT--GGA--------T--------------TTGAGAA--A---GTG--TG----
i ornAna1.Contig53964          I 2 C 0
s geoFor1.JH740018               1736465 62 +   2102797 --------------T------G--TGAATCCATGGATTG--------------GT----------G------------TGTGTGA----------ATCC----ATGGATTG-GTGTGC--ATG--------A--------------ATCCGTG--G---ATT--GG----
i geoFor1.JH740018             C 0 C 0
s taeGut2.chr18                  2063741 62 -  11201131 --------------T------G--TTTATTAATGTGTGT--------------AA----------A------------TGTGAGA----------GTGA----ATGGAT---GTGTTT--ATT--------A--------------ATGTGTGTAA---ATG--TG----
i taeGut2.chr18                C 0 C 0
s pseHum1.KB221220               3809334 62 +   7268516 --------------T------G--TAAATAAAT--ATCA--------------AT----------G------------AATGTGA----------GTGT----ATTAAT---GTGTAA--ATA--------A--------------ATATCAGTGA---ATGAATG----
i pseHum1.KB221220             C 0 C 0
s melUnd1.JH556573                751481 58 +  10614383 --------------T------A--T--GCATGGAGGTGT--------------AT----------G------------TGTGTGC----------GTGA----ATGTGA---ACATGT--GCA--------C--------------ATGCGCA--T---CTG--TG----
i melUnd1.JH556573             C 0 C 0
s amaVit1.AOCU01222764               971 70 -      1397 --------------T------A--TGGGTATACGGGTGT--------------ATTGCTATATGGG------------TGTATGG----------TTGT----ACGGCt---gtatgg--gta--------c--------------atgggtg--c---atg--gg----
i amaVit1.AOCU01222764         C 0 C 0
s melGal1.chr7                  34310230 62 -  38723565 --------------T------G--CAAGCGCATGCAACA--------------GT----------T------------TGTAAGG----------GTGTG--CAAGAAT---GTGTAA--GAG--------C--------------ATGCAAA--A---TTG--TG----
i melGal1.chr7                 C 0 C 0
s allMis1.JH737491                498312 58 -    628740 --------------C------A--TCTGTAACAGGCTCT--------------GT----------G------------TGTGTGG----------GTGTGTTCATGGAT---GTGTGT-----------------------------TATGGG------TTA--TG----
i allMis1.JH737491             C 0 C 0
s cheMyd1.KB605988                134313 60 +    155857 --------------C------G--CCTGCACGTGAGGGC--------------GT----------G------------TATCAGT----------GTGT----GGGGAT---GTCGGC--GCC--------T--------------GTACGTG--A---GGG--TG----
i cheMyd1.KB605988             C 0 C 0
s chrPic2.chrUn_KK083223v1        104915 82 +    779542 --------------CGAGTGTG--TTTGCACGTGTGTGCGTCAGTGGATCTGGGT----------T------------TGTGAGT----------GTGT----ATGAAT---GTGAGCAAGTG--------T--------------GTTTGCA--C---GTG--TG----
i chrPic2.chrUn_KK083223v1     C 0 C 0
s pelSin1.JH207189               1424537 74 +   1874153 --------------C------A--CAGGTACGTGTTTGC------------GGGT----------G------------TGTGAGCATAGGTAAGTGTGC----GAGGGT---GCGCACAGGTA--------C--------------GTGTTTG--C---GGG--TG----
i pelSin1.JH207189             C 0 C 0
s apaSpi1.KB929605                579586 58 +   1015623 --------------T------A--T--GTGCATGTTGGT------------GGGT----------G------------TATGTGC----------GTGA----CAGGAT---GGGT----GTA--------T--------------GTATGAA--T---GGG--TG----
i apaSpi1.KB929605             C 0 C 0
s xenTro7.KB022020                 31043 64 -     78772 ----------TGTAT------G--TGTGTGTGTGTATAT--------------GT----------G------------AGTGTGC----------GTGT----ATGTGA---GTGGGT--GTG--------T--------------GTGTGTA--T---GTA--TG----
i xenTro7.KB022020             C 0 I 4
s latCha1.JH131426                 58227 64 +     59601 --------------------AG--TGCATGTTGGGGTGA--------------AT----------G-----GCAGAGCAATGAGT----------GTGG----ATATGA---CTGGA---GTT--------T--------------CTGGATC--T---GGc--------
i latCha1.JH131426             C 0 I 2
s takFla1.AOOT01113665               104 38 +       323 ------------CGT------G--TGTGTGTCTGTGCGT--------------GT----------G------------------------------------------T---GTGTGA--GTG--------T--------------GTGTG-------------------
i takFla1.AOOT01113665         C 0 C 0
s hapBur1.JH425491                251941 64 -   1273513 ------------AGT------G-ATAATTGACTAAGGGA--------------GG----------GATCTAGGAAG--AGTG-----------------------GAAT---AGATGA--GGGATGTAGGAT--------------GCAGG-------------------
i hapBur1.JH425491             C 0 C 0
s oryLat2.chr4                  28408750 38 -  34636364 ------------CGT------G--TGCGAGTGCATTTAT--------------GA----------G------------------------------------------T---GTGTGA--ACA--------T--------------GCACG-------------------
i oryLat2.chr4                 C 0 C 0
s danRer10.chr3                  6753192 66 +  62385949 ------------CGT------G--TGTGTCTGTATGTGT--------------GA----------GAGAGAGAAAATTAGTGTGT----------GTGT----AAGAAA---GTGTAT--GTG--------T--------------GTATG-------------------
i danRer10.chr3                C 0 C 0
s astMex1.KB871645                368669 66 -   1180455 ------------CAT------A--CGAGTTTGTGAATGT--------------GA----------GAGCATGTATGCAAGTGCTT----------GAAT----GCGAAt---gtgtga--ata--------c--------------gtctg-------------------
i astMex1.KB871645             C 0 C 0
s lepOcu1.chrUn_JH591782            9525 80 -     15061 ------------CGT------A--ACTGTGAATAACtgt--------------ga----------gtgcatgaatatgtgtgtta----------gtgc----ttaagt---gtgcga--gtg--------tgagaataagtgcgagtgtg-------------------
i lepOcu1.chrUn_JH591782       C 0 C 0
s petMar2.GL480054                 25617 74 -     29607 TGATTTCATCCGAGT------G--TGATTGTATCCGGGT--------------GT----------GATTATGTCCG--AGTGTGA----------TTGT----ACCCGA---GTGTGA--TTG--------T--------------ATC---------------------
i petMar2.GL480054             C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e musFur1.GL896914              13614000 4726 -  19722643 I
e vicPac2.KB632437              19214414 4051 -  22931326 I
e camFer1.KB017763               2808324 4105 -   6207710 I
e odoRosDiv1.KB229025            3037147 4279 +   4816872 I
e felCat8.chrA3                134108711 5116 + 140925898 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e anaPla1.KB742696               1254472  0 -   1270250 I
e dasNov3.JH567436               1035721 4147 -   2788317 I
e equCab2.chr15                 84038092 4333 +  91571448 I
e triMan1.JH594629               9969198 5212 +  24341844 I
e loxAfr3.scaffold_20           27621811 6071 -  46401353 I
e cerSim1.JH767782               6811574 4566 -  14545593 I
e orcOrc1.KB316907              10843903 4321 +  17242564 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21191877 3938 -  23169006 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-155740.000000
s hg38.chr8_KI270814v1_alt         88046 20 +    141812 TCATTgtgtaagtg-------------aagctg
s ponAbe2.chr8                  59057584 20 + 153482349 TCATTGTGTAAGTG-------------AAGCTG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48136245 20 + 100215132 TCATTgtgtaagtg-------------aagctg
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99343390  9 + 108792865 -------gtatgtg-----------------tg
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24009679  9 +  27210278 -------gtgtgta-----------------ag
i saiBol1.JH378126             C 0 C 0
s canFam3.chr17                 57841788 16 -  64289059 ----TGTGTGTGTG-------------TTGCTG
i canFam3.chr17                C 0 I 4665
s monDom5.chrX                  12914188 18 -  79335909 tgagcatgcaagtg-------------t--ctg
i monDom5.chrX                 I 2 I 2
s sarHar1.chr3_GL849915_random   3907388 20 +   4730170 TGAACATGTGGGTA-------------TGGATA
i sarHar1.chr3_GL849915_random I 2 I 2
s ornAna1.Contig53964                514 20 -      2070 TCAGTGCATTTATG-------------AGGTTG
i ornAna1.Contig53964          C 0 C 0
s geoFor1.JH740018               1736527 14 +   2102797 ----CGTGTGAATC-------------CATG--
i geoFor1.JH740018             C 0 I 8
s taeGut2.chr18                  2063803 16 -  11201131 ----AGAGTGAATT-------------AATGTG
i taeGut2.chr18                C 0 I 10
s pseHum1.KB221220               3809396 16 +   7268516 ----TGAGTGtatt-------------aaagtg
i pseHum1.KB221220             C 0 I 10
s melUnd1.JH556573                751539 16 +  10614383 ----TGTACATGCA-------------CAAAAG
i melUnd1.JH556573             C 0 I 10
s amaVit1.AOCU01222764              1041 16 -      1397 ----tgtatggatg-------------tatgag
i amaVit1.AOCU01222764         C 0 I 8
s melGal1.chr7                  34310292 16 -  38723565 ----CAAACATTTG-------------TAAGGG
i melGal1.chr7                 C 0 I 10
s allMis1.JH737491                498370 16 -    628740 ----TGTATGTTAT-------------AGGCTG
i allMis1.JH737491             C 0 I 10
s cheMyd1.KB605988                134373 20 +    155857 ----CGTATCAGTG----TGTGGG---GAT--G
i cheMyd1.KB605988             C 0 I 10
s chrPic2.chrUn_KK083223v1        104997 29 +    779542 ----TGCGTCAGTGGAGCCTTGAGTTTGATCGG
i chrPic2.chrUn_KK083223v1     C 0 I 10
s pelSin1.JH207189               1424611 16 +   1874153 ----TGTGAGCATA-------------GGTAAG
i pelSin1.JH207189             C 0 I 10
s apaSpi1.KB929605                579644 18 +   1015623 ----TATGTGCATG-----------TTGGTGGG
i apaSpi1.KB929605             C 0 I 10
s xenTro7.KB022020                 31111 16 -     78772 ----TGTGTATGTG-------------AGTGTG
i xenTro7.KB022020             I 4 I 4
s latCha1.JH131426                 58293 20 +     59601 gtgatgttggcatg-------------aatgta
i latCha1.JH131426             I 2 C 0
s takFla1.AOOT01113665               142 14 +       323 TGTCTGTGCGTGTG-------------------
i takFla1.AOOT01113665         C 0 C 0
s hapBur1.JH425491                252005 14 -   1273513 GGACtgagtgagtg-------------------
i hapBur1.JH425491             C 0 I 4
s oryLat2.chr4                  28408788 14 -  34636364 TGTCAGAATGCACA-------------------
i oryLat2.chr4                 C 0 C 0
s danRer10.chr3                  6753258 20 +  62385949 TGATGGAGTGTGTA-------------TATGTG
i danRer10.chr3                C 0 I 8
s astMex1.KB871645                368735 20 -   1180455 tgtttacgtgagtg-------------tgtgta
i astMex1.KB871645             C 0 I 8
s lepOcu1.chrUn_JH591782            9605 14 -     15061 tgactaagtgtgcg-------------------
i lepOcu1.chrUn_JH591782       C 0 I 2
s petMar2.GL480054                 25691 18 -     29607 --CGAGTGTGGTTG-------------TATCCG
i petMar2.GL480054             C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e musFur1.GL896914              13614000 4726 -  19722643 I
e vicPac2.KB632437              19214414 4051 -  22931326 I
e camFer1.KB017763               2808324 4105 -   6207710 I
e odoRosDiv1.KB229025            3037147 4279 +   4816872 I
e felCat8.chrA3                134108711 5116 + 140925898 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e anaPla1.KB742696               1254472  0 -   1270250 I
e dasNov3.JH567436               1035721 4147 -   2788317 I
e equCab2.chr15                 84038092 4333 +  91571448 I
e triMan1.JH594629               9969198 5212 +  24341844 I
e loxAfr3.scaffold_20           27621811 6071 -  46401353 I
e pteAle1.KB030580              19414557 4168 -  23789964 I
e cerSim1.JH767782               6811574 4566 -  14545593 I
e orcOrc1.KB316907              10843903 4321 +  17242564 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21191877 3938 -  23169006 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-496023.000000
s hg38.chr8_KI270814v1_alt         88066  76 +    141812 tgtgtaatt----------gtgt--------------g--------t-----ataagtgagggtgtg----gaga-----ttgtg---tgagaggatg---------------------tacg------tg-tgattgtg--t--------------------------gtcagggt----gtga
s ponAbe2.chr8                  59057604  74 + 153482349 TGTCTAATT----------GTGT--------------G--------T-----ATGAGTGAGGGTGTG----GAGA-----TTGTG---TGAGAGGATG---------------------TAAG------TG-TGAT--TG--T--------------------------GTCAGGgt----gtga
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48136265  76 + 100215132 tgtgtaatt----------gtgt--------------g--------t-----gtgaaggagggtgtg----gaga-----ttgtg---tcagaggatg---------------------taag------tg-tgattgtg--t--------------------------gtcagggt----gtga
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99343399  66 + 108792865 tgtgtgact----------gtgt--------------a--------g--gatgtgagt---------------ga-----ttgtg---tgaatgagtg---------------------tgta------tg-tg--tgtg--t--------------------------gtgtgact----gtga
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24009688  57 +  27210278 ggtgtgatt----------gtgt--------------g--------a-----atgagt---------------ga-----ttgtg---t------atg---------------------ggtg------tg-tg--tgtg--t--------------------------gACTGACT----GTGA
i saiBol1.JH378126             C 0 C 0
s monDom5.chrX                  12914208  70 -  79335909 tgcattaat----------gtgc--------------g--------g-----atgctaaagttt---------gc-----ataagccttgagagtatg---------------------tgtg------ca-taagtgtg--t------------------------------gagt----gcat
i monDom5.chrX                 I 2 C 0
s sarHar1.chr3_GL849915_random   3907410  71 +   4730170 tgtgcacaa----------gtgt--------------g--------t-----gtgagtgagcat---------gc-----atgag---tgtgagtgtg---------------------tatg------aa-tgagtgtA--C--------------------------ATAAGAGT----GCAC
i sarHar1.chr3_GL849915_random I 2 C 0
s ornAna1.Contig53964                534  62 -      2070 --TGTGAAT----------TTGG--------------G--------AAAGGGGTGAGT---------------GC-----ACGTG---GGAGGTGGTG---------------------TGCA------TT-TGA----------------------------------GAAAGGGT----GTGA
i ornAna1.Contig53964          C 0 C 0
s geoFor1.JH740018               1736549  79 +   2102797 tgtgtgaatccatggactggtgt--------------g--------t-----gtgaatccatgg---------at-----tggtg---tgtgaatac-----------------------atg------ga-ttggtgtg--t--------------------------gtgcatcc----atgg
i geoFor1.JH740018             I 8 C 0
s taeGut2.chr18                  2063829  75 -  11201131 TGTGTAAAT----------GTGA--------------G--------A-----GTGAATAAACGT---------GA-----GAGTG---AATAAATGTG---------------------AGTG------AA-TTAATGTG--T--------------------------GTAAATGTGAGAGTGA
i taeGut2.chr18                I 10 C 0
s pseHum1.KB221220               3809422  67 +   7268516 tgagtgaat-----------tga--------------g--------t-----gtataatga-gt---------gt-----gagtg---tattaat-------------------------gtg------ta-ttaatgtgaat--------------------------gtgagtgt----gtaa
i pseHum1.KB221220             I 10 C 0
s melUnd1.JH556573                751565  71 +  10614383 Tatgtgcaa----------gtgt--------------g--------g-----ctgagggggtgc---------ac-----atgcg---tgtgcctgtg---------------------tgtg------ca-tgagtatg--t--------------------------gtgtgtgt----atat
i melUnd1.JH556573             I 10 C 0
s amaVit1.AOCU01222764              1065  71 -      1397 tatgtggtt----------gtat--------------g--------g-----atgtaggagtgt---------at-----gggtg---AATGCGTATA---------------------TGGG------TG-TAAGGGCG--T--------------------------ATTGCTGT----ATGG
i amaVit1.AOCU01222764         I 8 C 0
s melGal1.chr7                  34310318 106 -  38723565 CGTGCAAAC----------GCGTTCAACAGTGCAAGAG--------C-----GTGCAATCACAT---------GC-----AAGGG---CATGCAAGAGTCTAAAAACTTGTGCAAAAACTGTG------TA-AGGCTATG--C--------------------------AGTCATGT----GCAA
i melGal1.chr7                 I 10 C 0
s allMis1.JH737491                498396  79 -    628740 TGTATGCAT----------GTGT--------------GCTATGTGTT-----ATGTGTGCATTG---------CA-----GGCTG---TCTGTGGGTG---------------------TGTT------TG-TGCATGTG--T--------------------------GTTATGGG----TTGT
i allMis1.JH737491             I 10 C 0
s cheMyd1.KB605988                134403  77 +    155857 TACGTGAGG----------GTGC--------------G--------T-----ATCAGTGTGTGG---------GG-----ATGTC---GGCGCCTGTACGTGAG---------------GGTG------CG-TATCAGTG--T--------------------------GTGGGGAT----GTCG
i cheMyd1.KB605988             I 10 C 0
s chrPic2.chrUn_KK083223v1        105036  75 +    779542 CATGTGAAT----------GTGA--------------G--------C-----AAgtgtgtttgc---------ac-----gtgtg---tgcgtcagtggatccg---------------ggtt------tg-tg--agtg--t--------------------------gtgtgaat----gtga
i chrPic2.chrUn_KK083223v1     I 10 C 0
s pelSin1.JH207189               1424637  83 +   1874153 TGCGCACAG----------GTAC--------------G--------T-----GTTTGCGGGTGT---------GT-----GAGTG---TAGGTAAGTGTGCGAT---------------GGTGCACACAGG-TACATGTT--T--------------------------GCGGGCAT----GTGA
i pelSin1.JH207189             I 10 C 0
s apaSpi1.KB929605                579672  69 +   1015623 TG---ACAG----------G--------------------------------ATGGGTGTATGT---------AT-----GAATG---GGTGTATGTGCATGTT---------------GGTG------Gg-tgtatgtg--c--------------------------gtgacagg----atgg
i apaSpi1.KB929605             I 10 C 0
s xenTro7.KB022020                 31131  65 -     78772 TATGTGTTT----------GTGT--------------G--------T-----ATGTGTATGTGA---------GT-----GTGTG---TATGTGTGTG---------------------TGTG------TA-TGGGAGTG--T--------------------------GT----------GTGT
i xenTro7.KB022020             I 4 C 0
s latCha1.JH131426                 58313  85 +     59601 TATATGAAT----------GTAT-----------------------T-----ATCACTGAGTCTGCAATCTGAGG-----TTCTA---TGATGGGATTTtctat---------------tctg------ta-tttttttt--t--------------------------tttttttt----tttg
i latCha1.JH131426             C 0 C 0
s takFla1.AOOT01113665               156  47 +       323 --------T----------GTAT--------------G--------T-----GGGTGTGTGTCT---------GT---------G---CGTGAGTGTA---------------------TGTG------GG-TGTGTGTC--T------------------------------------------
i takFla1.AOOT01113665         C 0 I 6
s hapBur1.JH425491                252023  62 -   1273513 ------aat----------gagt--------------g--------a-----gggagagaagga---------gg---------g---agagagtgtg---------------------tgag------ggataaaggac--t--------------------------aagggagg----TCGA
i hapBur1.JH425491             I 4 I 11
s oryLat2.chr4                  28408802  51 -  34636364 ------TAT----------GAAT--------------G--------T-----GTGAGCATGCAC---------GT---------T---TCAGAGCATG---------------------TACG------TT-TCAAAGTG--C--------------------------AA--------------
i oryLat2.chr4                 C 0 I 6
s danRer10.chr3                  6753286  99 +  62385949 tgtgtgtgt----------gtgt--------------g--------t-----gtgagtgtgtgt---------gtg---agtATA---TGTGAGAAAG---------------------TGAG------TG-TGTGTGTA--TGAGAAAGAGAGAGTGTGTATGTGATAAAGAGAGT----GTGT
i danRer10.chr3                I 8 I 260
s astMex1.KB871645                368763  85 -   1180455 tgtgtttgt----------gagt--------------g--------t-----gtaaatacgact---------gt-----gttta---tgtgagtgtg---------------------taaa------tg-tgagtgtg--t------------ttgtgagtgtgtgaatgagact----gtgt
i astMex1.KB871645             I 8 I 30
s lepOcu1.chrUn_JH591782            9621  76 -     15061 tgtgtgact----------aagt--------------g--------t-----gtgagtgcgagt---------gtgtgaattaag---tgcgagtgtg---------------------taaa------tg-tgtgaata--a--------------------------ctgagtgC----ATGA
i lepOcu1.chrUn_JH591782       I 2 C 0
s petMar2.GL480054                 25709  71 -     29607 AGTGTGATT----------ATGT--------------C--------C-----GAGTGTGATTGT---------AT-----CCGAG---TGTGATGGTA---------------------TCCG------AG-TGTGATTG--C--------------------------ACCCGAGT----GTGA
i petMar2.GL480054             C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e musFur1.GL896914              13614000 4726 -  19722643 I
e vicPac2.KB632437              19214414 4051 -  22931326 I
e camFer1.KB017763               2808324 4105 -   6207710 I
e odoRosDiv1.KB229025            3037147 4279 +   4816872 I
e canFam3.chr17                 57841804 4665 -  64289059 I
e felCat8.chrA3                134108711 5116 + 140925898 I
e tetNig2.chr10                  6379385   0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382   0 -   6649201 I
e neoBri1.JH422308               3491820   0 -   5414369 I
e araMac1.AOUJ01470298               637   0 -       895 I
e fr3.HE591725                    289786   0 -    411779 I
e ficAlb2.chr2                 148476508   0 + 157563209 I
e anoCar2.chr1                 148577473   4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214   0 -  25666195 I
e falPer1.KB390952               2753956   0 -  18327016 I
e falChe1.KB397350               1707310   0 -   3649919 I
e macEug2.GL109592                105897   0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e anaPla1.KB742696               1254472   0 -   1270250 I
e dasNov3.JH567436               1035721 4147 -   2788317 I
e equCab2.chr15                 84038092 4333 +  91571448 I
e triMan1.JH594629               9969198 5212 +  24341844 I
e loxAfr3.scaffold_20           27621811 6071 -  46401353 I
e pteAle1.KB030580              19414557 4168 -  23789964 I
e cerSim1.JH767782               6811574 4566 -  14545593 I
e orcOrc1.KB316907              10843903 4321 +  17242564 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21191877 3938 -  23169006 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-197113.000000
s hg38.chr8_KI270814v1_alt         88142 24 +    141812 gtg-----t----at--gtgt------------g----------g------g----------tg--t------------------atgagt--gt--
s ponAbe2.chr8                  59057678 24 + 153482349 gtg-----t----at--gtgt------------g----------g------g----------tg--t------------------gtgagt--gt--
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48136341 24 + 100215132 gtg-----t----at--gtgt------------g----------g------g----------tg--t------------------GTGATT--GT--
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99343465 26 + 108792865 atg-----a----gg--atat------------g----------a------g----------tgact------------------gtcagt--gt--
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24009745 26 +  27210278 ATG-----A----GG--ATAT------------G----------A------G----------TGACT------------------ATCAgt--gt--
i saiBol1.JH378126             C 0 C 0
s monDom5.chrX                  12914278 24 -  79335909 aag-----t----at--gcaa------------g----------t------g----------tg--a------------------gaaggt--gt--
i monDom5.chrX                 C 0 C 0
s sarHar1.chr3_GL849915_random   3907481 26 +   4730170 AAA-----T----GTGGGTAT------------G----------C------A----------TG--A------------------ATGAGT--GT--
i sarHar1.chr3_GL849915_random C 0 C 0
s ornAna1.Contig53964                596 26 -      2070 GTG-----C----AT--TTAT------------G----------A------G----------GTGGT------------------GTGAAT--TT--
i ornAna1.Contig53964          C 0 C 0
s geoFor1.JH740018               1736628 26 +   2102797 att-----g----gt--gtgt------------g----------c------a----------tg--c------------------atggattggt--
i geoFor1.JH740018             C 0 C 0
s taeGut2.chr18                  2063904 24 -  11201131 ATG-----A----AT--ATGA------------G----------A------G----------TG--A------------------ATAAAT--GT--
i taeGut2.chr18                C 0 C 0
s pseHum1.KB221220               3809489 24 +   7268516 ata-----a----at--atga------------g----------a------g----------tg--a------------------atgagt--gt--
i pseHum1.KB221220             C 0 C 0
s melUnd1.JH556573                751636 23 +  10614383 gtg-----t----gt--gtat-----------------------t------g----------tg--t------------------gtatgt--gt--
i melUnd1.JH556573             C 0 C 0
s amaVit1.AOCU01222764              1136 40 -      1397 GTG-----TACTGGT--GTATGCTCGTACGGCTG----------T------A----------TG--G------------------GTACAT--GA--
i amaVit1.AOCU01222764         C 0 C 0
s melGal1.chr7                  34310424 34 -  38723565 GAG-----T----GT--GTAA------------GAGACAGCAACA------G----------TG--T------------------GTAAGA--GA--
i melGal1.chr7                 C 0 C 0
s allMis1.JH737491                498475 26 -    628740 GTG-----T----GT--GTTA----------CGG----------G------C----------TG--T------------------GTGGAT--GT--
i allMis1.JH737491             C 0 C 0
s cheMyd1.KB605988                134480 20 +    155857 GCG-----C----CT--GTA--------CGTGAG----------G------G----------TG--C------------------------------
i cheMyd1.KB605988             C 0 C 0
s chrPic2.chrUn_KK083223v1        105111 50 +    779542 GCG-----A----AT--GTGT----TCTCATGCG----------T------G----------TG--CATCAGTGGATCCGGGTTTGTAAGT--GT--
i chrPic2.chrUn_KK083223v1     C 0 C 0
s pelSin1.JH207189               1424720 38 +   1874153 GTG-----T----AG--GTAA----GTATACGAG----------G------G----------TG--C--------ACACAG----GTACGT--GT--
i pelSin1.JH207189             C 0 C 0
s apaSpi1.KB929605                579741 26 +   1015623 gtg-----t----at--gtat----gaat----g----------g------g----------t----------------------gtatgt--gc--
i apaSpi1.KB929605             C 0 C 0
s xenTro7.KB022020                 31196 24 -     78772 ATG-----T----GT--GTGT------------G----------T------A----------TG--T------------------ATGTGT--TT--
i xenTro7.KB022020             C 0 C 0
s latCha1.JH131426                 58398 29 +     59601 gtgcaaaat----gT--GTAA------------G----------A------T----------TG--T------------------CTTTTG--GT--
i latCha1.JH131426             C 0 C 0
s takFla1.AOOT01113665               209 24 +       323 GAG-----T----GT--ATGT------------G----------G------G----------TG--T------------------GTGCGT--GT--
i takFla1.AOOT01113665         I 6 I 8
s hapBur1.JH425491                252096 30 -   1273513 GAT-----T----AA--ATGA------------G----------GGAGGCAG----------TA--A------------------GCAAGG--GA--
i hapBur1.JH425491             I 11 I 8
s oryLat2.chr4                  28408859 24 -  34636364 GGG-----C----AT--CTTT------------G----------A------G----------CG--T------------------GTGAGC--GT--
i oryLat2.chr4                 I 6 N 0
s danRer10.chr3                  6753645 34 +  62385949 GTG-----T----AT--ATGT------------G----------A------GAAAGTGTGTTTG--T------------------GTGTAT--GT--
i danRer10.chr3                I 260 I 13
s astMex1.KB871645                368878 18 -   1180455 -----------------atgc------------g----------a------g----------tg--t------------------gtgtat--gc--
i astMex1.KB871645             I 30 I 8
s lepOcu1.chrUn_JH591782            9697 24 -     15061 ATA-----A----GT--Atgt------------g----------a------g----------tg--c------------------gtaagt--gt--
i lepOcu1.chrUn_JH591782       C 0 I 8
s petMar2.GL480054                 25780 24 -     29607 -------------------------TTTCATCCG----------A------G----------TG--T------------------GATTGT--ATCC
i petMar2.GL480054             C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e musFur1.GL896914              13614000 4726 -  19722643 I
e vicPac2.KB632437              19214414 4051 -  22931326 I
e camFer1.KB017763               2808324 4105 -   6207710 I
e odoRosDiv1.KB229025            3037147 4279 +   4816872 I
e canFam3.chr17                 57841804 4665 -  64289059 I
e felCat8.chrA3                134108711 5116 + 140925898 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e anaPla1.KB742696               1254472  0 -   1270250 I
e dasNov3.JH567436               1035721 4147 -   2788317 I
e equCab2.chr15                 84038092 4333 +  91571448 I
e triMan1.JH594629               9969198 5212 +  24341844 I
e loxAfr3.scaffold_20           27621811 6071 -  46401353 I
e pteAle1.KB030580              19414557 4168 -  23789964 I
e cerSim1.JH767782               6811574 4566 -  14545593 I
e orcOrc1.KB316907              10843903 4321 +  17242564 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21191877 3938 -  23169006 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-184501.000000
s hg38.chr8_KI270814v1_alt         88166 21 +    141812 ggg-------------------ta-----tgagtgtg--tgtgaatg
s ponAbe2.chr8                  59057702 21 + 153482349 ggg-------------------ta-----tgagtgtg--tgtgaatg
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48136365 21 + 100215132 GGG-------------------TA-----TGAGTGTG--TGTGAATG
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99343491 21 + 108792865 gga-------------------tg-----tgaatgta--tgtggggg
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24009771 21 +  27210278 gga-------------------tg-----tgaatgtg--tgtggggg
i saiBol1.JH378126             C 0 I 3
s monDom5.chrX                  12914302 21 -  79335909 gca-------------------ca-----caagtgtg--tgtgcatg
i monDom5.chrX                 C 0 C 0
s sarHar1.chr3_GL849915_random   3907507 21 +   4730170 GCA-------------------TA-----AGAGTACG--TATGAATG
i sarHar1.chr3_GL849915_random C 0 C 0
s ornAna1.Contig53964                622 24 -      2070 GGG-------------------AAAGGGGTGAGTACA--CGTG--TG
i ornAna1.Contig53964          C 0 C 0
s geoFor1.JH740018               1736654 16 +   2102797 g------------------------------tgtgaatctgtggat-
i geoFor1.JH740018             C 0 C 0
s taeGut2.chr18                  2063928 14 -  11201131 G------------------------------AGTGAA--TGTTGTT-
i taeGut2.chr18                C 0 C 0
s pseHum1.KB221220               3809513 20 +   7268516 gtg-------------------ag-----catgtaaa--tgtgagt-
i pseHum1.KB221220             C 0 C 0
s melUnd1.JH556573                751659 20 +  10614383 gtg-------------------ta-----tgagtgAA--CATGCAC-
i melUnd1.JH556573             C 0 C 0
s amaVit1.AOCU01222764              1176 20 -      1397 GTG-------------------CA-----TGGGTGTA--TGGATGT-
i amaVit1.AOCU01222764         C 0 C 0
s melGal1.chr7                  34310458 20 -  38723565 GTG-------------------CA-----ACAGTGTG--TGTGTGC-
i melGal1.chr7                 C 0 C 0
s allMis1.JH737491                498501 20 -    628740 GTT-------------------CT-----TGCATGCG--TGTTACT-
i allMis1.JH737491             C 0 C 0
s cheMyd1.KB605988                134500  9 +    155857 ----------------------------------GTA--TCAGTG--
i cheMyd1.KB605988             C 0 n 0
s chrPic2.chrUn_KK083223v1        105161 37 +    779542 TTG-TGACTAAGCGAGTATGTTTG-----CACATGTG--TGAGTC--
i chrPic2.chrUn_KK083223v1     C 0 I 35
s pelSin1.JH207189               1424758 38 +   1874153 TTGCGGGCGTGAGGTACGAGTTTG-----CAggtgtg--tgagtg--
i pelSin1.JH207189             C 0 I 1
s apaSpi1.KB929605                579767 19 +   1015623 ctg-------------------tg-----aagatgtg--tgtatg--
i apaSpi1.KB929605             C 0 I 1
s xenTro7.KB022020                 31220 17 -     78772 GTG-------------------TG-----TATGTGTA--TGTG----
i xenTro7.KB022020             C 0 C 0
s latCha1.JH131426                 58427 14 +     59601 GCG-------------------TC-----TAGG-GGA--TG------
i latCha1.JH131426             C 0 C 0
s takFla1.AOOT01113665               241 15 +       323 GTG-------------------CG-----TGTGTGTG--TG------
i takFla1.AOOT01113665         I 8 C 0
s hapBur1.JH425491                252134 15 -   1273513 GCA-------------------AC-----GGAGTGAA--TG------
i hapBur1.JH425491             I 8 C 0
s danRer10.chr3                  6753692 15 +  62385949 gtg-------------------tg-----tgtgtgtg--tg------
i danRer10.chr3                I 13 C 0
s astMex1.KB871645                368904 15 -   1180455 GTA-------------------TG-----CGAGTGCA--TG------
i astMex1.KB871645             I 8 C 0
s lepOcu1.chrUn_JH591782            9729 15 -     15061 gtg-------------------tg-----cgagtgcg--ag------
i lepOcu1.chrUn_JH591782       I 8 C 0
s petMar2.GL480054                 25804 20 -     29607 GGG-------------------TG-----TGATTATG--TCCGAGT-
i petMar2.GL480054             C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e musFur1.GL896914              13614000 4726 -  19722643 I
e vicPac2.KB632437              19214414 4051 -  22931326 I
e camFer1.KB017763               2808324 4105 -   6207710 I
e odoRosDiv1.KB229025            3037147 4279 +   4816872 I
e canFam3.chr17                 57841804 4665 -  64289059 I
e felCat8.chrA3                134108711 5116 + 140925898 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e anaPla1.KB742696               1254472  0 -   1270250 I
e dasNov3.JH567436               1035721 4147 -   2788317 I
e equCab2.chr15                 84038092 4333 +  91571448 I
e triMan1.JH594629               9969198 5212 +  24341844 I
e loxAfr3.scaffold_20           27621811 6071 -  46401353 I
e pteAle1.KB030580              19414557 4168 -  23789964 I
e cerSim1.JH767782               6811574 4566 -  14545593 I
e orcOrc1.KB316907              10843903 4321 +  17242564 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21191877 3938 -  23169006 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-228552.000000
s hg38.chr8_KI270814v1_alt         88187 21 +    141812 aag------------------tgattgtca------------gggtgtgat
s ponAbe2.chr8                  59057723 21 + 153482349 aag------------------tgactgtga------------aggtgtgat
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48136386 24 + 100215132 AAGT---------------TTTGATTGTGA------------GGGTGTGAT
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99343512 19 + 108792865 --g------------------tgatggtgg------------gggtgtgag
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24009795 21 +  27210278 gaa------------------cgagggtgt------------gagtgtgga
i saiBol1.JH378126             I 3 C 0
s monDom5.chrX                  12914323 16 -  79335909 ACC-----------------------ATGC------------AGGTGTGAC
i monDom5.chrX                 C 0 C 0
s sarHar1.chr3_GL849915_random   3907528 14 +   4730170 AGA-----------------------GTGC------------ATGTATG--
i sarHar1.chr3_GL849915_random C 0 C 0
s ornAna1.Contig53964                646 12 -      2070 ACG---------------------------------------TGGTGTGCA
i ornAna1.Contig53964          C 0 C 0
s geoFor1.JH740018               1736670  9 +   2102797 ------------------------------------------tggtgtgtg
i geoFor1.JH740018             C 0 C 0
s taeGut2.chr18                  2063942  9 -  11201131 ------------------------------------------TGTTTTGCA
i taeGut2.chr18                C 0 C 0
s pseHum1.KB221220               3809533  9 +   7268516 ------------------------------------------ggatgaACG
i pseHum1.KB221220             C 0 C 0
s melUnd1.JH556573                751679  9 +  10614383 ------------------------------------------AGGAGTGTC
i melUnd1.JH556573             C 0 C 0
s amaVit1.AOCU01222764              1196  9 -      1397 ------------------------------------------AGGAGTGTA
i amaVit1.AOCU01222764         C 0 C 0
s melGal1.chr7                  34310478  9 -  38723565 ------------------------------------------AAGCATGTG
i melGal1.chr7                 C 0 C 0
s allMis1.JH737491                498521  9 -    628740 ------------------------------------------GGCTCTGCA
i allMis1.JH737491             C 0 C 0
s chrPic2.chrUn_KK083223v1        105233 23 +    779542 --------------------------GTGTG--ACTGTGAGCAAGTGTGTT
i chrPic2.chrUn_KK083223v1     I 35 C 0
s pelSin1.JH207189               1424797 23 +   1874153 --------------------------aggta--agtgtgcgagggtgtgca
i pelSin1.JH207189             I 1 C 0
s apaSpi1.KB929605                579787 11 +   1015623 --------------------------at--------------gggtgggtg
i apaSpi1.KB929605             I 1 C 0
s xenTro7.KB022020                 31237 24 -     78772 ---AGTG------------TGCGTGTATGT------------GAGTGTGTG
i xenTro7.KB022020             C 0 C 0
s latCha1.JH131426                 58441 35 +     59601 ----ACACATGTAACACATACTGAATTTTA------------AGGTACAAC
i latCha1.JH131426             C 0 C 0
s takFla1.AOOT01113665               256  8 +       323 -------------------------------------------AGTGTGTG
i takFla1.AOOT01113665         C 0 I 6
s hapBur1.JH425491                252149  8 -   1273513 -------------------------------------------AGTGAGTG
i hapBur1.JH425491             C 0 n 0
s danRer10.chr3                  6753707  8 +  62385949 -------------------------------------------tgtgtgtg
i danRer10.chr3                C 0 I 44
s astMex1.KB871645                368919  8 -   1180455 -------------------------------------------AATGTGAg
i astMex1.KB871645             C 0 I 18
s lepOcu1.chrUn_JH591782            9744  8 -     15061 -------------------------------------------aataagtg
i lepOcu1.chrUn_JH591782       C 0 I 28
s petMar2.GL480054                 25824 21 -     29607 ------------------------------GTGATTGTACCCGAGTGTGAT
i petMar2.GL480054             C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e musFur1.GL896914              13614000 4726 -  19722643 I
e vicPac2.KB632437              19214414 4051 -  22931326 I
e camFer1.KB017763               2808324 4105 -   6207710 I
e odoRosDiv1.KB229025            3037147 4279 +   4816872 I
e canFam3.chr17                 57841804 4665 -  64289059 I
e felCat8.chrA3                134108711 5116 + 140925898 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e anaPla1.KB742696               1254472  0 -   1270250 I
e cheMyd1.KB605988                134509  0 +    155857 I
e dasNov3.JH567436               1035721 4147 -   2788317 I
e equCab2.chr15                 84038092 4333 +  91571448 I
e triMan1.JH594629               9969198 5212 +  24341844 I
e loxAfr3.scaffold_20           27621811 6071 -  46401353 I
e pteAle1.KB030580              19414557 4168 -  23789964 I
e cerSim1.JH767782               6811574 4566 -  14545593 I
e orcOrc1.KB316907              10843903 4321 +  17242564 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21191877 3938 -  23169006 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-43348.000000
s hg38.chr8_KI270814v1_alt         88208 10 +    141812 tgtgtg---t-----------gag
s ponAbe2.chr8                  59057744 10 + 153482349 tgtgtg---t-----------gag
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48136410  6 + 100215132 ----TG---T-----------GAG
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99343531 10 + 108792865 ggtgtg---t-----------gga
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24009816 21 +  27210278 tatgag---tgtgattgcgtaggg
i saiBol1.JH378126             C 0 C 0
s monDom5.chrX                  12914339 13 -  79335909 TGCAAAGTCT-----------GTA
i monDom5.chrX                 C 0 C 0
s sarHar1.chr3_GL849915_random   3907542  4 +   4730170 ---------T-----------GAA
i sarHar1.chr3_GL849915_random C 0 C 0
s ornAna1.Contig53964                658 10 -      2070 TTTGAG---A-----------GAG
i ornAna1.Contig53964          C 0 n 0
s geoFor1.JH740018               1736679 10 +   2102797 tgAATC---C-----------ATG
i geoFor1.JH740018             C 0 C 0
s taeGut2.chr18                  2063951  5 -  11201131 -----C---T-----------GTT
i taeGut2.chr18                C 0 C 0
s pseHum1.KB221220               3809542 10 +   7268516 TCAGTG---T-----------ATT
i pseHum1.KB221220             C 0 C 0
s melUnd1.JH556573                751688 10 +  10614383 TGTGTT---C-----------ATG
i melUnd1.JH556573             C 0 C 0
s amaVit1.AOCU01222764              1205 10 -      1397 TGGGTG---A-----------ATG
i amaVit1.AOCU01222764         C 0 C 0
s melGal1.chr7                  34310487 10 -  38723565 TAAGAG---T-----------GTG
i melGal1.chr7                 C 0 C 0
s allMis1.JH737491                498530  2 -    628740 TG----------------------
i allMis1.JH737491             C 0 C 0
s chrPic2.chrUn_KK083223v1        105256 10 +    779542 TGCACG---T-----------GTG
i chrPic2.chrUn_KK083223v1     C 0 C 0
s pelSin1.JH207189               1424820 10 +   1874153 taggta---c-----------gag
i pelSin1.JH207189             C 0 C 0
s apaSpi1.KB929605                579798 10 +   1015623 tatgtg---c-----------ctg
i apaSpi1.KB929605             C 0 C 0
s xenTro7.KB022020                 31261 10 -     78772 TATGTG---T-----------GTG
i xenTro7.KB022020             C 0 C 0
s latCha1.JH131426                 58476 10 +     59601 AGTCTG---T-----------GTA
i latCha1.JH131426             C 0 I 1
s takFla1.AOOT01113665               270 10 +       323 TGTGCG---T-----------GTG
i takFla1.AOOT01113665         I 6 C 0
s danRer10.chr3                  6753759 10 +  62385949 TTTACT---T-----------GCA
i danRer10.chr3                I 44 C 0
s astMex1.KB871645                368945 10 -   1180455 tttatg---t-----------gag
i astMex1.KB871645             I 18 C 0
s lepOcu1.chrUn_JH591782            9780 10 -     15061 tATACG---T-----------GTG
i lepOcu1.chrUn_JH591782       I 28 C 0
s petMar2.GL480054                 25845 10 -     29607 TGTATC---C-----------GAG
i petMar2.GL480054             C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e musFur1.GL896914              13614000 4726 -  19722643 I
e vicPac2.KB632437              19214414 4051 -  22931326 I
e camFer1.KB017763               2808324 4105 -   6207710 I
e odoRosDiv1.KB229025            3037147 4279 +   4816872 I
e canFam3.chr17                 57841804 4665 -  64289059 I
e felCat8.chrA3                134108711 5116 + 140925898 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e anaPla1.KB742696               1254472  0 -   1270250 I
e cheMyd1.KB605988                134509  0 +    155857 I
e dasNov3.JH567436               1035721 4147 -   2788317 I
e equCab2.chr15                 84038092 4333 +  91571448 I
e triMan1.JH594629               9969198 5212 +  24341844 I
e loxAfr3.scaffold_20           27621811 6071 -  46401353 I
e pteAle1.KB030580              19414557 4168 -  23789964 I
e cerSim1.JH767782               6811574 4566 -  14545593 I
e orcOrc1.KB316907              10843903 4321 +  17242564 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21191877 3938 -  23169006 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-192187.000000
s hg38.chr8_KI270814v1_alt         88218 32 +    141812 ----------tgtgga----tgt-----gattg-----tgt-gagtgttattgt----------gtg--
s ponAbe2.chr8                  59057754 32 + 153482349 ----------tgtgga----tgt-----gattg-----t-----gtgttactgtgtg------agtg--
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48136416 32 + 100215132 ----------TGTGGA----TAT-----GATTG-----T-----GTGTTATTGTGTG------AGTG--
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99343541 37 + 108792865 ----------tatgag----tgt-----gatta-----tgtagggtgtgagtggttg------tgtg--
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24009837 34 +  27210278 ----------tgtgag----tgt-----gagtg-----t---ggatatgagtgactg------ggtg--
i saiBol1.JH378126             C 0 C 0
s monDom5.chrX                  12914352 31 -  79335909 ----------TGAGCA---Atgt-----gagtc-----t---ttgcctgagcatg----------ta--
i monDom5.chrX                 C 0 C 0
s sarHar1.chr3_GL849915_random   3907546 32 +   4730170 ----------TATGCA------T-----GAGTA-----T---TTGTGTGAGTGTGAA------CATG--
i sarHar1.chr3_GL849915_random C 0 C 0
s geoFor1.JH740018               1736689 32 +   2102797 ----------GATTGG----TAt-----gtgaa-----t-----ccatggatttgtg------tgtg--
i geoFor1.JH740018             C 0 C 0
s taeGut2.chr18                  2063956 29 -  11201131 ----------GAT--A----TTT-----GTTAA-----T-----ATGTTG-TTTATT------TTAG--
i taeGut2.chr18                C 0 C 0
s pseHum1.KB221220               3809552 32 +   7268516 ----------CATGTG----AGT-----GTGAG-----C-----ATGTAAATATGGG------AGTG--
i pseHum1.KB221220             C 0 C 0
s melUnd1.JH556573                751698 32 +  10614383 ----------CGAcca----tgc-----acatg-----t-----gtgtgtctCTCCG------TGCA--
i melUnd1.JH556573             C 0 C 0
s amaVit1.AOCU01222764              1215 36 -      1397 ----------CGTATATGGGTGT-----ACAGG-----T-----GTATTGCTGTATg------ggtg--
i amaVit1.AOCU01222764         C 0 C 0
s melGal1.chr7                  34310497 38 -  38723565 ----------CAAACG----CAT-----GTAAG-----T-----GTAAGGGTGTGCAAAAGCTTGTA--
i melGal1.chr7                 C 0 C 0
s allMis1.JH737491                498532 27 -    628740 ---------------G----ACT-----CTGTG-----C-----ATGTAGGTGTGTG------TACA--
i allMis1.JH737491             C 0 C 0
s chrPic2.chrUn_KK083223v1        105266 32 +    779542 ----------TGCGTC----AGT-----GGATC-----C-----GGGTTTGTGAGTG------CGTG--
i chrPic2.chrUn_KK083223v1     C 0 C 0
s pelSin1.JH207189               1424830 32 +   1874153 ----------tttgca----ggt-----gtgtg-----a-----gtgtAGGTAAGTG------TGCG--
i pelSin1.JH207189             C 0 C 0
s apaSpi1.KB929605                579808 32 +   1015623 ----------tcagtg----ggt-----gtatg-----t-----gcgtgacaggatg------tgtg--
i apaSpi1.KB929605             C 0 C 0
s xenTro7.KB022020                 31271 32 -     78772 ----------TATGTA----TGT-----GTTTG-----T-----GTATGTGAGTGTG------TGTA--
i xenTro7.KB022020             C 0 C 0
s latCha1.JH131426                 58487 28 +     59601 ----------------------T-----GCATGATCCTT-----TTGTTCTTGTG-A------TGTG--
i latCha1.JH131426             I 1 C 0
s takFla1.AOOT01113665               280 26 +       323 --------------------TGT-----GTGAG-----T-----GTGTGTGTGTCTG------TGTG--
i takFla1.AOOT01113665         C 0 n 0
s danRer10.chr3                  6753769 31 +  62385949 --------------------TGTAGGCAGTAAg-----t-----gtgtgtgtgtgtg------tgtg--
i danRer10.chr3                C 0 I 2
s astMex1.KB871645                368955 26 -   1180455 --------------------tgt-----gttaa-----t-----gtgactgtgttta------tttg--
i astMex1.KB871645             C 0 I 2
s lepOcu1.chrUn_JH591782            9790 31 -     15061 --------------------TGGAAAAAGTAtg-----a-----gtgaataagagtg------aata--
i lepOcu1.chrUn_JH591782       C 0 I 4
s petMar2.GL480054                 25855 44 -     29607 TGTGGTTATGTCCGAG----TGT-----GATTG-----T-----ATCCGAGTGTGAT------TGTATC
i petMar2.GL480054             C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e musFur1.GL896914              13614000 4726 -  19722643 I
e vicPac2.KB632437              19214414 4051 -  22931326 I
e camFer1.KB017763               2808324 4105 -   6207710 I
e odoRosDiv1.KB229025            3037147 4279 +   4816872 I
e canFam3.chr17                 57841804 4665 -  64289059 I
e felCat8.chrA3                134108711 5116 + 140925898 I
e ornAna1.Contig53964                668  0 -      2070 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e anaPla1.KB742696               1254472  0 -   1270250 I
e cheMyd1.KB605988                134509  0 +    155857 I
e dasNov3.JH567436               1035721 4147 -   2788317 I
e equCab2.chr15                 84038092 4333 +  91571448 I
e triMan1.JH594629               9969198 5212 +  24341844 I
e loxAfr3.scaffold_20           27621811 6071 -  46401353 I
e pteAle1.KB030580              19414557 4168 -  23789964 I
e cerSim1.JH767782               6811574 4566 -  14545593 I
e orcOrc1.KB316907              10843903 4321 +  17242564 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21191877 3938 -  23169006 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-93990.000000
s hg38.chr8_KI270814v1_alt         88250 33 +    141812 agg----gtgtga----gtga--ttatgtgtatgtgtGTGAAT----
s ponAbe2.chr8                  59057786 33 + 153482349 agg----gtgtga----gtga--ttatgtgtatgtgtgtgAAT----
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48136448 33 + 100215132 GGG----GTGTGA----GTGA--TTATGTATATGTGTGTGAAT----
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99343578 33 + 108792865 tgg----atgtga----gtga--ctgtgtaagggggatggcat----
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24009871 41 +  27210278 tgactgtatgtgacggtgtga--ctgtgtAAGGGAGATGGCAT----
i saiBol1.JH378126             C 0 C 0
s monDom5.chrX                  12914383 30 -  79335909 tga----ctatgt----ataa--gcatatgtatttatgtg-------
i monDom5.chrX                 C 0 C 0
s sarHar1.chr3_GL849915_random   3907578 30 +   4730170 TGG----GTATAG----ATAA--atgtgcacaactgtgtg-------
i sarHar1.chr3_GL849915_random C 0 C 0
s geoFor1.JH740018               1736721 33 +   2102797 gat----ccatgg----attg--gtgtgtgcatccatggattg----
i geoFor1.JH740018             C 0 I 16
s taeGut2.chr18                  2063985 31 -  11201131 AGG----AAATGG---TATGA--GTGTGTTTGTTTA---ATTA----
i taeGut2.chr18                C 0 I 21
s pseHum1.KB221220               3809584 33 +   7268516 AAT----GAATGT----GTGA--GCATGTAAATGCACgagtga----
i pseHum1.KB221220             C 0 I 38
s melUnd1.JH556573                751730 31 +  10614383 TAC----ACATGT----ACAA--GCATGTG--CACATGGGTGT----
i melUnd1.JH556573             C 0 I 7
s amaVit1.AOCU01222764              1251 33 -      1397 tat----tgctgt----acgg--gtgtattgctgtacgggtgt----
i amaVit1.AOCU01222764         C 0 I 8
s melGal1.chr7                  34310535 33 -  38723565 AGG----GCATGG----AAAC--ACATGTAAGAGCATGCAACA----
i melGal1.chr7                 C 0 I 36
s allMis1.JH737491                498559 32 -    628740 CAC----TATTGC----TTGG--TCAC-TGGCTACATGTGTGT----
i allMis1.JH737491             C 0 I 17
s chrPic2.chrUn_KK083223v1        105298 31 +    779542 TGA----ATGTGA----GC----GAGTGTGTTTGCACGCGTGT----
i chrPic2.chrUn_KK083223v1     C 0 I 269
s pelSin1.JH207189               1424862 33 +   1874153 ATG----GTGCGC----ACGG--GAATGTGTTTGTGGGCGTGT----
i pelSin1.JH207189             C 0 I 17
s apaSpi1.KB929605                579840 35 +   1015623 taG----GTATGA----ATGGGTGCATGTGCGCGTCGGCGTGC----
i apaSpi1.KB929605             C 0 I 17
s xenTro7.KB022020                 31303 33 -     78772 TGG----GAGTGT----GTGT--GTATGTGTGTGTGTATGTAT----
i xenTro7.KB022020             C 0 C 0
s latCha1.JH131426                 58515 33 +     59601 ATG----GTCTGG----CAAA--AGCCAAATATTTTTGTGATT----
i latCha1.JH131426             C 0 C 0
s danRer10.chr3                  6753802 33 +  62385949 tgt----gtgtAA----GAAA--GAGAgtgtatgtgtctgcat----
i danRer10.chr3                I 2 C 0
s astMex1.KB871645                368983 33 -   1180455 tgt----gtgaat----gaga--ctttttttatgtgagtgtgt----
i astMex1.KB871645             I 2 C 0
s lepOcu1.chrUn_JH591782            9825 33 -     15061 tgc----gagtgt----atga--ataagtgtgagtgtgcgaat----
i lepOcu1.chrUn_JH591782       I 4 C 0
s petMar2.GL480054                 25899 33 -     29607 --------CGAGT----GTGA--TTATGTCCGAGTGTGATTGTACCC
i petMar2.GL480054             C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e musFur1.GL896914              13614000 4726 -  19722643 I
e vicPac2.KB632437              19214414 4051 -  22931326 I
e camFer1.KB017763               2808324 4105 -   6207710 I
e odoRosDiv1.KB229025            3037147 4279 +   4816872 I
e canFam3.chr17                 57841804 4665 -  64289059 I
e felCat8.chrA3                134108711 5116 + 140925898 I
e ornAna1.Contig53964                668  0 -      2070 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e anaPla1.KB742696               1254472  0 -   1270250 I
e cheMyd1.KB605988                134509  0 +    155857 I
e dasNov3.JH567436               1035721 4147 -   2788317 I
e equCab2.chr15                 84038092 4333 +  91571448 I
e triMan1.JH594629               9969198 5212 +  24341844 I
e loxAfr3.scaffold_20           27621811 6071 -  46401353 I
e pteAle1.KB030580              19414557 4168 -  23789964 I
e cerSim1.JH767782               6811574 4566 -  14545593 I
e orcOrc1.KB316907              10843903 4321 +  17242564 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21191877 3938 -  23169006 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-75386.000000
s hg38.chr8_KI270814v1_alt         88283 10 +    141812 GATGG--TTGA----G
s ponAbe2.chr8                  59057819 10 + 153482349 GATGG--TTGA----A
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48136481 10 + 100215132 GATGG--TTGA----G
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99343611 13 + 108792865 gattg---tgagtgtg
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24009912 14 +  27210278 GATTG--TTGAGTGTG
i saiBol1.JH378126             C 0 C 0
s monDom5.chrX                  12914413  4 -  79335909 --------taa----g
i monDom5.chrX                 C 0 C 0
s sarHar1.chr3_GL849915_random   3907608  4 +   4730170 --------tga----g
i sarHar1.chr3_GL849915_random C 0 C 0
s geoFor1.JH740018               1736770  9 +   2102797 -ACTG--GTGT----G
i geoFor1.JH740018             I 16 C 0
s taeGut2.chr18                  2064037 10 -  11201131 CAACA--GTGC----T
i taeGut2.chr18                I 21 C 0
s pseHum1.KB221220               3809655  9 +   7268516 -gaat--gtga----g
i pseHum1.KB221220             I 38 C 0
s amaVit1.AOCU01222764              1292  9 -      1397 -attg--ctgt----a
i amaVit1.AOCU01222764         I 8 C 0
s melGal1.chr7                  34310604  9 -  38723565 -AAGA--GGGT----G
i melGal1.chr7                 I 36 C 0
s allMis1.JH737491                498608  9 -    628740 -acag--gaca----g
i allMis1.JH737491             I 17 C 0
s chrPic2.chrUn_KK083223v1        105598 10 +    779542 GATGG--GTGG----G
i chrPic2.chrUn_KK083223v1     I 269 C 0
s pelSin1.JH207189               1424912 10 +   1874153 CGAGG--GTGC----G
i pelSin1.JH207189             I 17 C 0
s apaSpi1.KB929605                579892 10 +   1015623 GAAGG--GTGT----A
i apaSpi1.KB929605             I 17 C 0
s xenTro7.KB022020                 31336  5 -     78772 -------GTGT----T
i xenTro7.KB022020             C 0 C 0
s latCha1.JH131426                 58548 10 +     59601 TATGT--GTGG----G
i latCha1.JH131426             C 0 N 0
s danRer10.chr3                  6753835  7 +  62385949 ---ga--gtaa----g
i danRer10.chr3                C 0 I 2
s astMex1.KB871645                369016  9 -   1180455 ---gaatgcgA----G
i astMex1.KB871645             C 0 I 2
s lepOcu1.chrUn_JH591782            9858  7 -     15061 ---aa--gtgt----g
i lepOcu1.chrUn_JH591782       C 0 I 2
s petMar2.GL480054                 25932  5 -     29607 ---GA--GTG------
i petMar2.GL480054             C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e musFur1.GL896914              13614000 4726 -  19722643 I
e vicPac2.KB632437              19214414 4051 -  22931326 I
e camFer1.KB017763               2808324 4105 -   6207710 I
e odoRosDiv1.KB229025            3037147 4279 +   4816872 I
e canFam3.chr17                 57841804 4665 -  64289059 I
e felCat8.chrA3                134108711 5116 + 140925898 I
e ornAna1.Contig53964                668  0 -      2070 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e anaPla1.KB742696               1254472  0 -   1270250 I
e cheMyd1.KB605988                134509  0 +    155857 I
e melUnd1.JH556573                751761  7 +  10614383 I
e dasNov3.JH567436               1035721 4147 -   2788317 I
e equCab2.chr15                 84038092 4333 +  91571448 I
e triMan1.JH594629               9969198 5212 +  24341844 I
e loxAfr3.scaffold_20           27621811 6071 -  46401353 I
e pteAle1.KB030580              19414557 4168 -  23789964 I
e cerSim1.JH767782               6811574 4566 -  14545593 I
e orcOrc1.KB316907              10843903 4321 +  17242564 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21191877 3938 -  23169006 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-80605.000000
s hg38.chr8_KI270814v1_alt         88293 23 +    141812 T--------GATTTCATGGGAGTGTGGGTGT
s ponAbe2.chr8                  59057829 23 + 153482349 T--------GATTGTGTGGGAGTGTGGGTGT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48136491 23 + 100215132 T--------GATTGTGTGGGAGTGTGGCTGT
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99343624 20 + 108792865 t--------gattgtgggggagc---agtgg
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24009926 20 +  27210278 T--------GATTGTGGGGGAGC---GGTGT
i saiBol1.JH378126             C 0 C 0
s monDom5.chrX                  12914417 19 -  79335909 t----------tcatgagc--gtgtggatgt
i monDom5.chrX                 C 0 C 0
s sarHar1.chr3_GL849915_random   3907612 23 +   4730170 t--------gagcatgcacgagtgtgagtgt
i sarHar1.chr3_GL849915_random C 0 C 0
s geoFor1.JH740018               1736779 23 +   2102797 T--------GAATCCAAGGATTTCTGGGTGT
i geoFor1.JH740018             C 0 n 0
s taeGut2.chr18                  2064047 23 -  11201131 G--------GAGGCCCAAGAGTCCTTGTCCT
i taeGut2.chr18                C 0 I 9
s pseHum1.KB221220               3809664 11 +   7268516 t--------gaa------------tgagtgt
i pseHum1.KB221220             C 0 C 0
s melUnd1.JH556573                751768 11 +  10614383 --------------------TGCCTGAGTGT
i melUnd1.JH556573             I 7 C 0
s amaVit1.AOCU01222764              1301 23 -      1397 c--------gggtgtattgctgtacgggtgt
i amaVit1.AOCU01222764         C 0 n 0
s melGal1.chr7                  34310613 23 -  38723565 C--------AAACGCATGCAAGATTGTGTAT
i melGal1.chr7                 C 0 C 0
s allMis1.JH737491                498617 23 -    628740 t--------aactgcacaggattcacagcgt
i allMis1.JH737491             C 0 C 0
s chrPic2.chrUn_KK083223v1        105608 27 +    779542 C----ATTATCGTGCCAGGGCATATGTGTGT
i chrPic2.chrUn_KK083223v1     C 0 C 0
s pelSin1.JH207189               1424922 31 +   1874153 CACAGGTACgtgtttgcgggtgtgtgagtgt
i pelSin1.JH207189             C 0 C 0
s apaSpi1.KB929605                579902 27 +   1015623 C----GTGTGTGTCGAGGGGTGTGCTGTTAT
i apaSpi1.KB929605             C 0 C 0
s xenTro7.KB022020                 31341 23 -     78772 T--------GTGTGTATGTGTGTGTATGTAT
i xenTro7.KB022020             C 0 I 2
s danRer10.chr3                  6753844 23 +  62385949 --------agacagagtatgtgtgtgtatga
i danRer10.chr3                I 2 C 0
s astMex1.KB871645                369027 23 -   1180455 --------CGGCAATGTGAGTGCGTGAATGC
i astMex1.KB871645             I 2 C 0
s lepOcu1.chrUn_JH591782            9867 23 -     15061 --------tgcacgaataagtgtgcgagtct
i lepOcu1.chrUn_JH591782       I 2 C 0
s petMar2.GL480054                 25937 23 -     29607 --------TGATTGTATCCGAGTGTGATTAT
i petMar2.GL480054             C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e musFur1.GL896914              13614000 4726 -  19722643 I
e vicPac2.KB632437              19214414 4051 -  22931326 I
e camFer1.KB017763               2808324 4105 -   6207710 I
e odoRosDiv1.KB229025            3037147 4279 +   4816872 I
e canFam3.chr17                 57841804 4665 -  64289059 I
e felCat8.chrA3                134108711 5116 + 140925898 I
e ornAna1.Contig53964                668  0 -      2070 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e anaPla1.KB742696               1254472  0 -   1270250 I
e cheMyd1.KB605988                134509  0 +    155857 I
e dasNov3.JH567436               1035721 4147 -   2788317 I
e equCab2.chr15                 84038092 4333 +  91571448 I
e triMan1.JH594629               9969198 5212 +  24341844 I
e loxAfr3.scaffold_20           27621811 6071 -  46401353 I
e pteAle1.KB030580              19414557 4168 -  23789964 I
e cerSim1.JH767782               6811574 4566 -  14545593 I
e orcOrc1.KB316907              10843903 4321 +  17242564 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21191877 3938 -  23169006 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=4955.000000
s hg38.chr8_KI270814v1_alt         88316 4 +    141812 GAGT--
s ponAbe2.chr8                  59057852 4 + 153482349 GAGT--
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48136514 4 + 100215132 GAGT--
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99343644 4 + 108792865 gggt--
i calJac3.chr14                C 0 I 5907
s saiBol1.JH378126              24009946 4 +  27210278 GGGT--
i saiBol1.JH378126             C 0 C 0
s monDom5.chrX                  12914436 4 -  79335909 gtgt--
i monDom5.chrX                 C 0 C 0
s sarHar1.chr3_GL849915_random   3907635 4 +   4730170 gtat--
i sarHar1.chr3_GL849915_random C 0 C 0
s pseHum1.KB221220               3809675 4 +   7268516 gaat--
i pseHum1.KB221220             C 0 C 0
s melUnd1.JH556573                751779 4 +  10614383 CAGT--
i melUnd1.JH556573             C 0 C 0
s melGal1.chr7                  34310636 4 -  38723565 GGAT--
i melGal1.chr7                 C 0 C 0
s allMis1.JH737491                498640 4 -    628740 ggtt--
i allMis1.JH737491             C 0 C 0
s chrPic2.chrUn_KK083223v1        105635 3 +    779542 GAC---
i chrPic2.chrUn_KK083223v1     C 0 C 0
s pelSin1.JH207189               1424953 4 +   1874153 aggt--
i pelSin1.JH207189             C 0 C 0
s apaSpi1.KB929605                579929 4 +   1015623 GACT--
i apaSpi1.KB929605             C 0 C 0
s xenTro7.KB022020                 31366 4 -     78772 GTGT--
i xenTro7.KB022020             I 2 C 0
s danRer10.chr3                  6753867 4 +  62385949 gagt--
i danRer10.chr3                C 0 C 0
s astMex1.KB871645                369050 4 -   1180455 GAGT--
i astMex1.KB871645             C 0 C 0
s lepOcu1.chrUn_JH591782            9890 4 -     15061 gaat--
i lepOcu1.chrUn_JH591782       C 0 C 0
s petMar2.GL480054                 25960 4 -     29607 --GTCC
i petMar2.GL480054             C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e musFur1.GL896914              13614000 4726 -  19722643 I
e vicPac2.KB632437              19214414 4051 -  22931326 I
e camFer1.KB017763               2808324 4105 -   6207710 I
e odoRosDiv1.KB229025            3037147 4279 +   4816872 I
e canFam3.chr17                 57841804 4665 -  64289059 I
e felCat8.chrA3                134108711 5116 + 140925898 I
e ornAna1.Contig53964                668 0 -      2070 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e cheMyd1.KB605988                134509 0 +    155857 I
e taeGut2.chr18                  2064070 9 -  11201131 I
e dasNov3.JH567436               1035721 4147 -   2788317 I
e equCab2.chr15                 84038092 4333 +  91571448 I
e triMan1.JH594629               9969198 5212 +  24341844 I
e loxAfr3.scaffold_20           27621811 6071 -  46401353 I
e pteAle1.KB030580              19414557 4168 -  23789964 I
e cerSim1.JH767782               6811574 4566 -  14545593 I
e orcOrc1.KB316907              10843903 4321 +  17242564 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21191877 3938 -  23169006 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=11099.000000
s hg38.chr8_KI270814v1_alt         88320 1 +    141812 G
s ponAbe2.chr8                  59057856 1 + 153482349 G
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48136518 1 + 100215132 G
i nomLeu3.chr16                C 0 C 0
s saiBol1.JH378126              24009950 1 +  27210278 G
i saiBol1.JH378126             C 0 C 0
s monDom5.chrX                  12914440 1 -  79335909 g
i monDom5.chrX                 C 0 C 0
s sarHar1.chr3_GL849915_random   3907639 1 +   4730170 g
i sarHar1.chr3_GL849915_random C 0 C 0
s taeGut2.chr18                  2064079 1 -  11201131 G
i taeGut2.chr18                I 9 C 0
s pseHum1.KB221220               3809679 1 +   7268516 g
i pseHum1.KB221220             C 0 C 0
s melUnd1.JH556573                751783 1 +  10614383 G
i melUnd1.JH556573             C 0 C 0
s melGal1.chr7                  34310640 1 -  38723565 G
i melGal1.chr7                 C 0 n 0
s allMis1.JH737491                498644 1 -    628740 g
i allMis1.JH737491             C 0 C 0
s pelSin1.JH207189               1424957 1 +   1874153 a
i pelSin1.JH207189             C 0 C 0
s apaSpi1.KB929605                579933 1 +   1015623 G
i apaSpi1.KB929605             C 0 C 0
s xenTro7.KB022020                 31370 1 -     78772 G
i xenTro7.KB022020             C 0 C 0
s danRer10.chr3                  6753871 1 +  62385949 g
i danRer10.chr3                C 0 I 113
s astMex1.KB871645                369054 1 -   1180455 G
i astMex1.KB871645             C 0 N 0
s lepOcu1.chrUn_JH591782            9894 1 -     15061 a
i lepOcu1.chrUn_JH591782       C 0 C 0
s petMar2.GL480054                 25964 1 -     29607 G
i petMar2.GL480054             C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e musFur1.GL896914              13614000 4726 -  19722643 I
e vicPac2.KB632437              19214414 4051 -  22931326 I
e camFer1.KB017763               2808324 4105 -   6207710 I
e odoRosDiv1.KB229025            3037147 4279 +   4816872 I
e canFam3.chr17                 57841804 4665 -  64289059 I
e felCat8.chrA3                134108711 5116 + 140925898 I
e ornAna1.Contig53964                668 0 -      2070 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105638 0 +    779542 C
e calJac3.chr14                 99343648 5907 + 108792865 I
e dasNov3.JH567436               1035721 4147 -   2788317 I
e equCab2.chr15                 84038092 4333 +  91571448 I
e triMan1.JH594629               9969198 5212 +  24341844 I
e loxAfr3.scaffold_20           27621811 6071 -  46401353 I
e pteAle1.KB030580              19414557 4168 -  23789964 I
e cerSim1.JH767782               6811574 4566 -  14545593 I
e orcOrc1.KB316907              10843903 4321 +  17242564 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21191877 3938 -  23169006 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=8288.000000
s hg38.chr8_KI270814v1_alt         88321 3 +    141812 ATT
s ponAbe2.chr8                  59057857 3 + 153482349 ATT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48136519 3 + 100215132 ATT
i nomLeu3.chr16                C 0 C 0
s saiBol1.JH378126              24009951 3 +  27210278 ATT
i saiBol1.JH378126             C 0 I 5927
s monDom5.chrX                  12914441 3 -  79335909 agt
i monDom5.chrX                 C 0 n 0
s sarHar1.chr3_GL849915_random   3907640 3 +   4730170 aat
i sarHar1.chr3_GL849915_random C 0 C 0
s taeGut2.chr18                  2064080 3 -  11201131 AGT
i taeGut2.chr18                C 0 C 0
s pseHum1.KB221220               3809680 3 +   7268516 aat
i pseHum1.KB221220             C 0 C 0
s melUnd1.JH556573                751784 3 +  10614383 GGT
i melUnd1.JH556573             C 0 C 0
s chrPic2.chrUn_KK083223v1        105638 2 +    779542 -AT
i chrPic2.chrUn_KK083223v1     C 0 C 0
s pelSin1.JH207189               1424958 3 +   1874153 agt
i pelSin1.JH207189             C 0 C 0
s apaSpi1.KB929605                579934 3 +   1015623 GAT
i apaSpi1.KB929605             C 0 C 0
s xenTro7.KB022020                 31371 3 -     78772 CGT
i xenTro7.KB022020             C 0 C 0
s danRer10.chr3                  6753985 3 +  62385949 AGA
i danRer10.chr3                I 113 C 0
s lepOcu1.chrUn_JH591782            9895 3 -     15061 agt
i lepOcu1.chrUn_JH591782       C 0 C 0
s petMar2.GL480054                 25965 3 -     29607 AGT
i petMar2.GL480054             C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e musFur1.GL896914              13614000 4726 -  19722643 I
e vicPac2.KB632437              19214414 4051 -  22931326 I
e camFer1.KB017763               2808324 4105 -   6207710 I
e odoRosDiv1.KB229025            3037147 4279 +   4816872 I
e canFam3.chr17                 57841804 4665 -  64289059 I
e felCat8.chrA3                134108711 5116 + 140925898 I
e ornAna1.Contig53964                668 0 -      2070 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH737491                498645 0 -    628740 C
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e cheMyd1.KB605988                134509 0 +    155857 I
e calJac3.chr14                 99343648 5907 + 108792865 I
e dasNov3.JH567436               1035721 4147 -   2788317 I
e equCab2.chr15                 84038092 4333 +  91571448 I
e triMan1.JH594629               9969198 5212 +  24341844 I
e loxAfr3.scaffold_20           27621811 6071 -  46401353 I
e pteAle1.KB030580              19414557 4168 -  23789964 I
e cerSim1.JH767782               6811574 4566 -  14545593 I
e orcOrc1.KB316907              10843903 4321 +  17242564 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21191877 3938 -  23169006 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=3700.000000
s hg38.chr8_KI270814v1_alt         88324 1 +    141812 G
s ponAbe2.chr8                  59057860 1 + 153482349 G
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48136522 1 + 100215132 G
i nomLeu3.chr16                C 0 C 0
s sarHar1.chr3_GL849915_random   3907643 1 +   4730170 g
i sarHar1.chr3_GL849915_random C 0 I 1436
s taeGut2.chr18                  2064083 1 -  11201131 G
i taeGut2.chr18                C 0 I 9
s pseHum1.KB221220               3809683 1 +   7268516 g
i pseHum1.KB221220             C 0 n 0
s melUnd1.JH556573                751787 1 +  10614383 G
i melUnd1.JH556573             C 0 I 29
s chrPic2.chrUn_KK083223v1        105640 1 +    779542 C
i chrPic2.chrUn_KK083223v1     C 0 C 0
s pelSin1.JH207189               1424961 1 +   1874153 g
i pelSin1.JH207189             C 0 C 0
s apaSpi1.KB929605                579937 1 +   1015623 C
i apaSpi1.KB929605             C 0 C 0
s xenTro7.KB022020                 31374 1 -     78772 G
i xenTro7.KB022020             C 0 C 0
s danRer10.chr3                  6753988 1 +  62385949 G
i danRer10.chr3                C 0 C 0
s lepOcu1.chrUn_JH591782            9898 1 -     15061 g
i lepOcu1.chrUn_JH591782       C 0 N 0
s petMar2.GL480054                 25968 1 -     29607 G
i petMar2.GL480054             C 0 N 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e musFur1.GL896914              13614000 4726 -  19722643 I
e vicPac2.KB632437              19214414 4051 -  22931326 I
e camFer1.KB017763               2808324 4105 -   6207710 I
e odoRosDiv1.KB229025            3037147 4279 +   4816872 I
e canFam3.chr17                 57841804 4665 -  64289059 I
e felCat8.chrA3                134108711 5116 + 140925898 I
e ornAna1.Contig53964                668 0 -      2070 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH737491                498645 0 -    628740 C
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e cheMyd1.KB605988                134509 0 +    155857 I
e calJac3.chr14                 99343648 5907 + 108792865 I
e monDom5.chrX                  12914444 0 -  79335909 I
e dasNov3.JH567436               1035721 4147 -   2788317 I
e equCab2.chr15                 84038092 4333 +  91571448 I
e triMan1.JH594629               9969198 5212 +  24341844 I
e loxAfr3.scaffold_20           27621811 6071 -  46401353 I
e pteAle1.KB030580              19414557 4168 -  23789964 I
e cerSim1.JH767782               6811574 4566 -  14545593 I
e orcOrc1.KB316907              10843903 4321 +  17242564 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21191877 3938 -  23169006 I
e saiBol1.JH378126              24009954 5927 +  27210278 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-2290.000000
s hg38.chr8_KI270814v1_alt         88325 4 +    141812 CCCG-
s ponAbe2.chr8                  59057861 4 + 153482349 CCCG-
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48136523 4 + 100215132 CCCG-
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99349555 4 + 108792865 ctca-
i calJac3.chr14                I 5907 C 0
s saiBol1.JH378126              24015881 4 +  27210278 ccca-
i saiBol1.JH378126             I 5927 C 0
s chrPic2.chrUn_KK083223v1        105641 3 +    779542 -TCA-
i chrPic2.chrUn_KK083223v1     C 0 C 0
s pelSin1.JH207189               1424962 3 +   1874153 -tgc-
i pelSin1.JH207189             C 0 n 0
s apaSpi1.KB929605                579938 3 +   1015623 -TCA-
i apaSpi1.KB929605             C 0 C 0
s xenTro7.KB022020                 31375 4 -     78772 TCTG-
i xenTro7.KB022020             C 0 N 0
s lepOcu1.chrLG4                61527472 4 -  73198282 -CCTC
i lepOcu1.chrLG4               N 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e musFur1.GL896914              13614000 4726 -  19722643 I
e vicPac2.KB632437              19214414 4051 -  22931326 I
e camFer1.KB017763               2808324 4105 -   6207710 I
e danRer10.chr3                  6753989 0 +  62385949 C
e odoRosDiv1.KB229025            3037147 4279 +   4816872 I
e canFam3.chr17                 57841804 4665 -  64289059 I
e felCat8.chrA3                134108711 5116 + 140925898 I
e ornAna1.Contig53964                668 0 -      2070 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221220               3809684 0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH737491                498645 0 -    628740 C
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e sarHar1.chr3_GL849915_random   3907644 1436 +   4730170 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e cheMyd1.KB605988                134509 0 +    155857 I
e melUnd1.JH556573                751788 29 +  10614383 I
e monDom5.chrX                  12914444 0 -  79335909 I
e taeGut2.chr18                  2064084 9 -  11201131 I
e dasNov3.JH567436               1035721 4147 -   2788317 I
e equCab2.chr15                 84038092 4333 +  91571448 I
e triMan1.JH594629               9969198 5212 +  24341844 I
e loxAfr3.scaffold_20           27621811 6071 -  46401353 I
e pteAle1.KB030580              19414557 4168 -  23789964 I
e cerSim1.JH767782               6811574 4566 -  14545593 I
e orcOrc1.KB316907              10843903 4321 +  17242564 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21191877 3938 -  23169006 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=2100.000000
s hg38.chr8_KI270814v1_alt         88329 1 +    141812 G
s ponAbe2.chr8                  59057865 1 + 153482349 G
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48136527 1 + 100215132 G
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99349559 1 + 108792865 g
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24015885 1 +  27210278 g
i saiBol1.JH378126             C 0 C 0
s xenTro7.KB021649             210849981 1 + 215906545 g
i xenTro7.KB021649             N 0 N 0
s lepOcu1.chrLG4                61527476 1 -  73198282 G
i lepOcu1.chrLG4               C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e musFur1.GL896914              13614000 4726 -  19722643 I
e vicPac2.KB632437              19214414 4051 -  22931326 I
e camFer1.KB017763               2808324 4105 -   6207710 I
e danRer10.chr3                  6753989 0 +  62385949 C
e odoRosDiv1.KB229025            3037147 4279 +   4816872 I
e canFam3.chr17                 57841804 4665 -  64289059 I
e felCat8.chrA3                134108711 5116 + 140925898 I
e ornAna1.Contig53964                668 0 -      2070 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221220               3809684 0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH737491                498645 0 -    628740 C
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e sarHar1.chr3_GL849915_random   3907644 1436 +   4730170 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929605                579941 0 +   1015623 C
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105644 0 +    779542 C
e pelSin1.JH207189               1424965 0 +   1874153 I
e melUnd1.JH556573                751788 29 +  10614383 I
e monDom5.chrX                  12914444 0 -  79335909 I
e taeGut2.chr18                  2064084 9 -  11201131 I
e dasNov3.JH567436               1035721 4147 -   2788317 I
e equCab2.chr15                 84038092 4333 +  91571448 I
e triMan1.JH594629               9969198 5212 +  24341844 I
e loxAfr3.scaffold_20           27621811 6071 -  46401353 I
e pteAle1.KB030580              19414557 4168 -  23789964 I
e cerSim1.JH767782               6811574 4566 -  14545593 I
e orcOrc1.KB316907              10843903 4321 +  17242564 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21191877 3938 -  23169006 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=2870.000000
s hg38.chr8_KI270814v1_alt         88330 2 +    141812 CC
s ponAbe2.chr8                  59057866 2 + 153482349 CC
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48136528 2 + 100215132 CC
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99349560 2 + 108792865 cc
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24015886 2 +  27210278 cc
i saiBol1.JH378126             C 0 C 0
s taeGut2.chr18                  2064093 1 -  11201131 -C
i taeGut2.chr18                I 9 C 0
s melUnd1.JH556573                751817 1 +  10614383 -C
i melUnd1.JH556573             I 29 C 0
s lepOcu1.chrLG4                61527477 2 -  73198282 AC
i lepOcu1.chrLG4               C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e musFur1.GL896914              13614000 4726 -  19722643 I
e vicPac2.KB632437              19214414 4051 -  22931326 I
e camFer1.KB017763               2808324 4105 -   6207710 I
e danRer10.chr3                  6753989 0 +  62385949 C
e odoRosDiv1.KB229025            3037147 4279 +   4816872 I
e canFam3.chr17                 57841804 4665 -  64289059 I
e felCat8.chrA3                134108711 5116 + 140925898 I
e ornAna1.Contig53964                668 0 -      2070 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221220               3809684 0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH737491                498645 0 -    628740 C
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e sarHar1.chr3_GL849915_random   3907644 1436 +   4730170 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929605                579941 0 +   1015623 C
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105644 0 +    779542 C
e pelSin1.JH207189               1424965 0 +   1874153 I
e monDom5.chrX                  12914444 0 -  79335909 I
e dasNov3.JH567436               1035721 4147 -   2788317 I
e equCab2.chr15                 84038092 4333 +  91571448 I
e triMan1.JH594629               9969198 5212 +  24341844 I
e loxAfr3.scaffold_20           27621811 6071 -  46401353 I
e pteAle1.KB030580              19414557 4168 -  23789964 I
e cerSim1.JH767782               6811574 4566 -  14545593 I
e orcOrc1.KB316907              10843903 4321 +  17242564 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21191877 3938 -  23169006 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-2383.000000
s hg38.chr8_KI270814v1_alt         88332 1 +    141812 -C
s ponAbe2.chr8                  59057868 1 + 153482349 -C
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48136530 1 + 100215132 -C
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99349562 1 + 108792865 -C
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24015888 1 +  27210278 -C
i saiBol1.JH378126             C 0 C 0
s cerSim1.JH767782               6816140 1 -  14545593 -C
i cerSim1.JH767782             I 4566 C 0
s triMan1.JH594629               9974410 1 +  24341844 -C
i triMan1.JH594629             I 5212 C 0
s taeGut2.chr18                  2064094 1 -  11201131 -T
i taeGut2.chr18                C 0 C 0
s melUnd1.JH556573                751818 1 +  10614383 -T
i melUnd1.JH556573             C 0 C 0
s lepOcu1.chrLG4                61527479 1 -  73198282 A-
i lepOcu1.chrLG4               C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e musFur1.GL896914              13614000 4726 -  19722643 I
e vicPac2.KB632437              19214414 4051 -  22931326 I
e camFer1.KB017763               2808324 4105 -   6207710 I
e danRer10.chr3                  6753989 0 +  62385949 C
e odoRosDiv1.KB229025            3037147 4279 +   4816872 I
e canFam3.chr17                 57841804 4665 -  64289059 I
e felCat8.chrA3                134108711 5116 + 140925898 I
e ornAna1.Contig53964                668 0 -      2070 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221220               3809684 0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH737491                498645 0 -    628740 C
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e sarHar1.chr3_GL849915_random   3907644 1436 +   4730170 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929605                579941 0 +   1015623 C
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105644 0 +    779542 C
e pelSin1.JH207189               1424965 0 +   1874153 I
e monDom5.chrX                  12914444 0 -  79335909 I
e dasNov3.JH567436               1035721 4147 -   2788317 I
e equCab2.chr15                 84038092 4333 +  91571448 I
e loxAfr3.scaffold_20           27621811 6071 -  46401353 I
e pteAle1.KB030580              19414557 4168 -  23789964 I
e orcOrc1.KB316907              10843903 4321 +  17242564 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21191877 3938 -  23169006 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=48451.000000
s hg38.chr8_KI270814v1_alt         88333 6 +    141812 AGGCAA
s ponAbe2.chr8                  59057869 6 + 153482349 AGGCAA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48136531 6 + 100215132 AGGCAA
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99349563 6 + 108792865 AGGCAA
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24015889 6 +  27210278 AGGCAA
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21195815 6 -  23169006 AGGCAA
i otoGar3.GL873541             I 3938 C 0
s cerSim1.JH767782               6816141 6 -  14545593 AGGCAT
i cerSim1.JH767782             C 0 C 0
s odoRosDiv1.KB229025            3041426 6 +   4816872 AGGCAA
i odoRosDiv1.KB229025          I 4279 C 0
s pteAle1.KB030580              19418725 6 -  23789964 AGGCAA
i pteAle1.KB030580             I 4168 C 0
s loxAfr3.scaffold_20           27627882 6 -  46401353 AGGCAA
i loxAfr3.scaffold_20          I 6071 C 0
s triMan1.JH594629               9974411 6 +  24341844 AGGCAA
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1039868 6 -   2788317 AGACAA
i dasNov3.JH567436             I 4147 C 0
s taeGut2.chr18                  2064095 6 -  11201131 GGGCAC
i taeGut2.chr18                C 0 I 602
s melUnd1.JH556573                751819 6 +  10614383 GGGTAC
i melUnd1.JH556573             C 0 I 24
s allMis1.JH737491                498645 5 -    628740 -ggcaa
i allMis1.JH737491             C 0 I 3
s chrPic2.chrUn_KK083223v1        105644 4 +    779542 --GCGC
i chrPic2.chrUn_KK083223v1     C 0 I 12
s apaSpi1.KB929605                579941 4 +   1015623 --GCCC
i apaSpi1.KB929605             C 0 I 6
s lepOcu1.chrLG4                61527480 6 -  73198282 AGGCAG
i lepOcu1.chrLG4               C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e musFur1.GL896914              13614000 4726 -  19722643 I
e vicPac2.KB632437              19214414 4051 -  22931326 I
e camFer1.KB017763               2808324 4105 -   6207710 I
e danRer10.chr3                  6753989 0 +  62385949 C
e canFam3.chr17                 57841804 4665 -  64289059 I
e felCat8.chrA3                134108711 5116 + 140925898 I
e ornAna1.Contig53964                668 0 -      2070 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221220               3809684 0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e sarHar1.chr3_GL849915_random   3907644 1436 +   4730170 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e cheMyd1.KB605988                134509 0 +    155857 I
e pelSin1.JH207189               1424965 0 +   1874153 I
e monDom5.chrX                  12914444 0 -  79335909 I
e equCab2.chr15                 84038092 4333 +  91571448 I
e orcOrc1.KB316907              10843903 4321 +  17242564 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-15630.000000
s hg38.chr8_KI270814v1_alt         88339 3 +    141812 TAA
s ponAbe2.chr8                  59057875 3 + 153482349 TCA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48136537 3 + 100215132 TCA
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99349569 3 + 108792865 TCT
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24015895 3 +  27210278 TCT
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21195821 3 -  23169006 TGT
i otoGar3.GL873541             C 0 C 0
s cerSim1.JH767782               6816147 2 -  14545593 TC-
i cerSim1.JH767782             C 0 C 0
s odoRosDiv1.KB229025            3041432 2 +   4816872 TC-
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19418731 2 -  23789964 TC-
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27627888 3 -  46401353 TCT
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9974417 3 +  24341844 TCT
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1039874 3 -   2788317 TTG
i dasNov3.JH567436             C 0 C 0
s melUnd1.JH556573                751849 1 +  10614383 --A
i melUnd1.JH556573             I 24 I 2
s allMis1.JH737491                498653 1 -    628740 --a
i allMis1.JH737491             I 3 I 2
s lepOcu1.chrLG4                61527486 2 -  73198282 TG-
i lepOcu1.chrLG4               C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e musFur1.GL896914              13614000 4726 -  19722643 I
e vicPac2.KB632437              19214414 4051 -  22931326 I
e camFer1.KB017763               2808324 4105 -   6207710 I
e danRer10.chr3                  6753989 0 +  62385949 C
e canFam3.chr17                 57841804 4665 -  64289059 I
e felCat8.chrA3                134108711 5116 + 140925898 I
e ornAna1.Contig53964                668 0 -      2070 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221220               3809684 0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e sarHar1.chr3_GL849915_random   3907644 1436 +   4730170 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929605                579945 6 +   1015623 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105648 12 +    779542 I
e pelSin1.JH207189               1424965 0 +   1874153 I
e monDom5.chrX                  12914444 0 -  79335909 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e equCab2.chr15                 84038092 4333 +  91571448 I
e orcOrc1.KB316907              10843903 4321 +  17242564 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=19334.000000
s hg38.chr8_KI270814v1_alt         88342 4 +    141812 TTTC
s ponAbe2.chr8                  59057878 4 + 153482349 TTTC
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48136540 4 + 100215132 TTTC
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99349572 4 + 108792865 TTTA
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24015898 4 +  27210278 TTTA
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21195824 4 -  23169006 TTTA
i otoGar3.GL873541             C 0 C 0
s equCab2.chr15                 84042425 4 +  91571448 TTTA
i equCab2.chr15                I 4333 C 0
s cerSim1.JH767782               6816149 4 -  14545593 TTTA
i cerSim1.JH767782             C 0 C 0
s canFam3.chr17                 57846469 4 -  64289059 TTTG
i canFam3.chr17                I 4665 C 0
s odoRosDiv1.KB229025            3041434 3 +   4816872 -TTG
i odoRosDiv1.KB229025          C 0 I 1
s pteAle1.KB030580              19418733 4 -  23789964 TGTA
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27627891 4 -  46401353 CTTA
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9974420 4 +  24341844 TTTA
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1039877 4 -   2788317 TTTA
i dasNov3.JH567436             C 0 C 0
s melUnd1.JH556573                751852 2 +  10614383 --TG
i melUnd1.JH556573             I 2 I 2
s allMis1.JH737491                498656 2 -    628740 --ta
i allMis1.JH737491             I 2 I 1
s chrPic2.chrUn_KK083223v1        105660 2 +    779542 --tg
i chrPic2.chrUn_KK083223v1     I 12 I 12
s apaSpi1.KB929605                579951 2 +   1015623 --TA
i apaSpi1.KB929605             I 6 I 2
s lepOcu1.chrLG4                61527488 2 -  73198282 --TG
i lepOcu1.chrLG4               C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e musFur1.GL896914              13614000 4726 -  19722643 I
e vicPac2.KB632437              19214414 4051 -  22931326 I
e camFer1.KB017763               2808324 4105 -   6207710 I
e danRer10.chr3                  6753989 0 +  62385949 C
e felCat8.chrA3                134108711 5116 + 140925898 I
e ornAna1.Contig53964                668 0 -      2070 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221220               3809684 0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e sarHar1.chr3_GL849915_random   3907644 1436 +   4730170 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e cheMyd1.KB605988                134509 0 +    155857 I
e pelSin1.JH207189               1424965 0 +   1874153 I
e monDom5.chrX                  12914444 0 -  79335909 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e orcOrc1.KB316907              10843903 4321 +  17242564 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=30471.000000
s hg38.chr8_KI270814v1_alt         88346 2 +    141812 AA-
s ponAbe2.chr8                  59057882 2 + 153482349 AA-
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48136544 2 + 100215132 AA-
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99349576 2 + 108792865 AA-
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24015902 2 +  27210278 AA-
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21195828 2 -  23169006 AA-
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19218465 2 -  22931326 AA-
i vicPac2.KB632437             I 4051 C 0
s camFer1.KB017763               2812429 2 -   6207710 AA-
i camFer1.KB017763             I 4105 C 0
s equCab2.chr15                 84042429 2 +  91571448 AA-
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6816153 2 -  14545593 AA-
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134113827 2 + 140925898 AA-
i felCat8.chrA3                I 5116 C 0
s canFam3.chr17                 57846473 2 -  64289059 AA-
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13618726 2 -  19722643 AA-
i musFur1.GL896914             I 4726 C 0
s odoRosDiv1.KB229025            3041438 2 +   4816872 AA-
i odoRosDiv1.KB229025          I 1 C 0
s pteAle1.KB030580              19418737 2 -  23789964 AA-
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27627895 2 -  46401353 AA-
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9974424 2 +  24341844 AA-
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1039881 2 -   2788317 AA-
i dasNov3.JH567436             C 0 C 0
s melUnd1.JH556573                751856 2 +  10614383 AA-
i melUnd1.JH556573             I 2 n 2
s chrPic2.chrUn_KK083223v1        105674 2 +    779542 aa-
i chrPic2.chrUn_KK083223v1     I 12 C 0
s apaSpi1.KB929605                579955 2 +   1015623 AA-
i apaSpi1.KB929605             I 2 C 0
s lepOcu1.chrLG4                61527490 2 -  73198282 -AC
i lepOcu1.chrLG4               C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e danRer10.chr3                  6753989 0 +  62385949 C
e ornAna1.Contig53964                668 0 -      2070 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221220               3809684 0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH737491                498658 1 -    628740 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e sarHar1.chr3_GL849915_random   3907644 1436 +   4730170 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e cheMyd1.KB605988                134509 0 +    155857 I
e pelSin1.JH207189               1424965 0 +   1874153 I
e monDom5.chrX                  12914444 0 -  79335909 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e orcOrc1.KB316907              10843903 4321 +  17242564 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=2840.000000
s hg38.chr8_KI270814v1_alt         88348 3 +    141812 ATA-
s ponAbe2.chr8                  59057884 3 + 153482349 ATA-
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48136546 3 + 100215132 ATA-
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99349578 3 + 108792865 GGA-
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24015904 3 +  27210278 GTA-
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21195830 3 -  23169006 ACA-
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19218467 3 -  22931326 GTA-
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2812431 3 -   6207710 GTA-
i camFer1.KB017763             C 0 C 0
s equCab2.chr15                 84042431 3 +  91571448 GTA-
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6816155 3 -  14545593 TTA-
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134113829 3 + 140925898 GTA-
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57846475 3 -  64289059 TTA-
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13618728 3 -  19722643 GTA-
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3041440 3 +   4816872 GTA-
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19418739 3 -  23789964 GCA-
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27627897 3 -  46401353 ATA-
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9974426 3 +  24341844 GTA-
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1039883 3 -   2788317 GTA-
i dasNov3.JH567436             C 0 C 0
s allMis1.JH737491                498659 3 -    628740 aaa-
i allMis1.JH737491             I 1 I 8
s chrPic2.chrUn_KK083223v1        105676 3 +    779542 ata-
i chrPic2.chrUn_KK083223v1     C 0 I 3
s apaSpi1.KB929605                579957 3 +   1015623 ACA-
i apaSpi1.KB929605             C 0 n 0
s danRer10.chr3                  6753989 1 +  62385949 ---C
i danRer10.chr3                C 0 C 0
s lepOcu1.chrLG4                61527492 3 -  73198282 -TTC
i lepOcu1.chrLG4               C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e ornAna1.Contig53964                668 0 -      2070 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221220               3809684 0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e sarHar1.chr3_GL849915_random   3907644 1436 +   4730170 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e cheMyd1.KB605988                134509 0 +    155857 I
e pelSin1.JH207189               1424965 0 +   1874153 I
e melUnd1.JH556573                751858 2 +  10614383 I
e monDom5.chrX                  12914444 0 -  79335909 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e orcOrc1.KB316907              10843903 4321 +  17242564 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=50872.000000
s hg38.chr8_KI270814v1_alt         88351 14 +    141812 ACAGT----TC--TC-----------------------------------C------CTTT
s ponAbe2.chr8                  59057887 14 + 153482349 ACAGT----TC--TC-----------------------------------C------CTTT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48136549 14 + 100215132 ACAGT----TC--TC-----------------------------------C------CTTT
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99349581 14 + 108792865 ACAAT----CC--TC-----------------------------------C------CTTT
i calJac3.chr14                C 0 I 2
s saiBol1.JH378126              24015907 14 +  27210278 GCAAT----CC--TC-----------------------------------C------CTTT
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21195833 14 -  23169006 GCAAT----GT--TC-----------------------------------C------CTTT
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19218470 14 -  22931326 ACAAC----CC--TC-----------------------------------C------CTTC
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2812434 14 -   6207710 ACAAC----CC--TC-----------------------------------C------CTTC
i camFer1.KB017763             C 0 C 0
s equCab2.chr15                 84042434 14 +  91571448 ACAAT----CC--TC-----------------------------------C------CCTC
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6816158 14 -  14545593 AAAAT----CC--TC-----------------------------------C------GTTT
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134113832 14 + 140925898 ACAAT----CC--TC-----------------------------------C------CTTC
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57846478 14 -  64289059 ACAAT----CC--CC-----------------------------------C------CTTC
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13618731 14 -  19722643 ACAAT----CC--TC-----------------------------------T------CTTC
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3041443 14 +   4816872 ACAAT----CC--TC-----------------------------------C------CTTC
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19418742 24 -  23789964 ACAATCAACCC--TC-----------------------------------CCTTCTGCTTC
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27627900 19 -  46401353 AAAAT----CC--TC-----------------------------------CCCGGT-TTTT
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9974429 19 +  24341844 AAAAT----CC--TC-----------------------------------CTGGGT-TTTT
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1039886 21 -   2788317 ATAAT----TCTGTT-----------------------------------TTTTGT-TTTT
i dasNov3.JH567436             C 0 C 0
s allMis1.JH737491                498670 14 -    628740 acaat----ac--tt-----------------------------------t------cttt
i allMis1.JH737491             I 8 I 4
s chrPic2.chrUn_KK083223v1        105682 13 +    779542 GCAA-----AC--TG-----------------------------------C------CCCC
i chrPic2.chrUn_KK083223v1     I 3 I 4
s danRer10.chr3                  6753990 14 +  62385949 CCAGC----GC--TC-----------------------------------A------CATC
i danRer10.chr3                C 0 C 0
s lepOcu1.chrLG4                61527495 49 -  73198282 CAGAC----TT--TCTGATGTactacatttcagttttttttgggAAATGAA------TATc
i lepOcu1.chrLG4               C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e ornAna1.Contig53964                668  0 -      2070 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221220               3809684  0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e sarHar1.chr3_GL849915_random   3907644 1436 +   4730170 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chrX                  12914444  0 -  79335909 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e orcOrc1.KB316907              10843903 4321 +  17242564 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-68558.000000
s hg38.chr8_KI270814v1_alt         88365 17 +    141812 CCCCCActctctttctt
s ponAbe2.chr8                  59057901 17 + 153482349 CCCCCACTCTCTTTCTT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48136563 17 + 100215132 CCCCCACTCTCTTTCTT
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99349597 16 + 108792865 CCCCCAC-CCCTCCCTT
i calJac3.chr14                I 2 C 0
s saiBol1.JH378126              24015921 15 +  27210278 -CCCCAC-CCCTCCCTT
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21195847 12 -  23169006 CCG-----CCCCCCCCT
i otoGar3.GL873541             C 0 C 0
s equCab2.chr15                 84042448  6 +  91571448 TCTCTC-----------
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6816172  6 -  14545593 TCTCCC-----------
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134113846  3 + 140925898 TCT--------------
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57846492  6 -  64289059 TCCCTT-----------
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13618745  6 -  19722643 TCTCTT-----------
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3041457  3 +   4816872 TCT--------------
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19418766  6 -  23789964 TCTCTT-----------
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27627919  4 -  46401353 TCTC-------------
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9974448  4 +  24341844 TCTC-------------
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1039907  4 -   2788317 CCTT-------------
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530538803 17 + 748055161 CCTCTGCTTTTTGACTT
i monDom5.chr1                 I 5218 C 0
s allMis1.JH737491                498688 17 -    628740 ttcgcagtccccctctt
i allMis1.JH737491             I 4 I 1755
s chrPic2.chrUn_KK083223v1        105699 17 +    779542 TCCACACACCCCTTCCT
i chrPic2.chrUn_KK083223v1     I 4 I 1
s danRer10.chr3                  6754004 17 +  62385949 Ttccctctctctctctc
i danRer10.chr3                C 0 C 0
s lepOcu1.chrLG4                61527544 17 -  73198282 ccccccttcttattttt
i lepOcu1.chrLG4               C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e vicPac2.KB632437              19218484  0 -  22931326 C
e camFer1.KB017763               2812448  0 -   6207710 C
e ornAna1.Contig53964                668  0 -      2070 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221220               3809684  0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e sarHar1.chr3_GL849915_random   3907644 1436 +   4730170 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e orcOrc1.KB316907              10843903 4321 +  17242564 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-26500.000000
s hg38.chr8_KI270814v1_alt         88382 20 +    141812 tctgtctttgctttTCCTC---------A
s ponAbe2.chr8                  59057918 20 + 153482349 CCTGTCTTTGCTTTTCCTC---------A
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48136580 20 + 100215132 CCTGTCTTTGCTTTTCCTC---------A
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99349613 26 + 108792865 CCTGTCTTAGCTACCACCC---CGCCCCA
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24015936 22 +  27210278 CCTGTCTTAGCTTTTCCCC---CG----A
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21195859 22 -  23169006 CCTGTCTTTGCTCTCTTCC---TG----A
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19218484 20 -  22931326 TCTGTCTTCGCGTTTCCCG---------G
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2812448 20 -   6207710 TCTGTCTTCGCGTTTCCCG---------G
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10848224 20 +  17242564 TCTGTCTTCCCTTTTCCTG---------G
i orcOrc1.KB316907             I 4321 C 0
s equCab2.chr15                 84042454 11 +  91571448 T---------CTGTTCCTG---------G
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6816178 11 -  14545593 T---------CTCTTCCTG---------G
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134113849 10 + 140925898 ----------CTCTTCCTG---------T
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57846498 20 -  64289059 CCTGTCTTCACTTTTCCTG---------G
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13618751 20 -  19722643 CCTGTCTTCACTTTTCCTG---------G
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3041460 10 +   4816872 ----------CTCTTCCTG---------T
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19418772 20 -  23789964 CCTGGCTTTGCTTCTCCTG---------G
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27627923 17 -  46401353 TC--TCCTT-TGTTTCCCA---------A
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9974452 17 +  24341844 TC--TCCTG-TTTTTTCTG---------A
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1039911 19 -   2788317 TCTGTCTTG-CTTTTCCTG---------A
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530538820 18 + 748055161 --AGAATTTCTAATTGTCC---------C
i monDom5.chr1                 C 0 C 0
s chrPic2.chrUn_KK083223v1        105717 19 +    779542 GCTGCTTTCCTCTCTGCCA----------
i chrPic2.chrUn_KK083223v1     I 1 n 1
s danRer10.chr3                  6754021 13 +  62385949 ---------tctctctctgtgt-------
i danRer10.chr3                C 0 C 0
s lepOcu1.chrLG4                61527561 10 -  73198282 ---------tcacattcta----------
i lepOcu1.chrLG4               C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e ornAna1.Contig53964                668  0 -      2070 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221220               3809684  0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH737491                498705 1755 -    628740 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e sarHar1.chr3_GL849915_random   3907644 1436 +   4730170 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=178167.000000
s hg38.chr8_KI270814v1_alt         88402 19 +    141812 GTTCACTTGGGTATGTCTG
s ponAbe2.chr8                  59057938 19 + 153482349 GTTCACTTGTGTATGTCTG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48136600 19 + 100215132 GTTCACTCGGGTATGTCTG
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99349639 19 + 108792865 GTTCACTTGGGTATGTCTG
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24015958 19 +  27210278 GTTCACTTGGGTATGTCTG
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21195881 19 -  23169006 ATTCACCTGGAGATGTCTG
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19218504 19 -  22931326 GTTCACATGGATAAGGTTG
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2812468 19 -   6207710 GTTCACATGGATAAGGCTG
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10848244 19 +  17242564 GTTCACCTGGATATGTCTG
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84042465 19 +  91571448 GTTCATTTAGATATGTCTG
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6816189 19 -  14545593 GTTCACTTGGATATGTCTG
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134113859  9 + 140925898 CTTCAC----------CTG
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57846518 19 -  64289059 ATTCACTTGGATACGTCTG
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13618771 19 -  19722643 GTTCACTTGGAAAAGTCTG
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3041470 19 +   4816872 CTTCACTTGGAAAAGTCTG
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19418792 19 -  23789964 GTTCACCTGGATGTGTCTG
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27627940 19 -  46401353 GTTTACTTAGACATGTCTG
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9974469 19 +  24341844 GTTCACCTGGATTTGTCTG
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1039930 19 -   2788317 GTTTATTTGGAGCGATCTG
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530538838 19 + 748055161 ATTTACCTGCTCATATCTG
i monDom5.chr1                 C 0 C 0
s danRer10.chr3                  6754034 19 +  62385949 gtgtgcgtgtgtgtgagtg
i danRer10.chr3                C 0 N 0
s lepOcu1.chrLG4                61527571 13 -  73198282 aTTTGC-----TATAACT-
i lepOcu1.chrLG4               C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e ornAna1.Contig53964                668  0 -      2070 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221220               3809684  0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH737491                498705 1755 -    628740 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e sarHar1.chr3_GL849915_random   3907644 1436 +   4730170 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=257189.000000
s hg38.chr8_KI270814v1_alt         88421 39 +    141812 ACGGGATAAA--------TAGTCAAA--ATTTTATGATCTCCCAAGTAG
s ponAbe2.chr8                  59057957 27 + 153482349 ATGGGATACA----------------------TATGATCTCCCAAGTAG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48136619 39 + 100215132 ACGGGATAAA--------TAGTCTAA--ATTTTACTATCTCCCAAGTAG
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99349658 43 + 108792865 ACAAGGTGAG----TAAGTAGTCAAA--GGTCTGTGATCTCACAAGTAG
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24015977 43 +  27210278 ACAAGGTGAG----TAAGTAGTCAAA--TGTCTGTGATCTCACAAGTAG
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21195900 43 -  23169006 ACAAGATGAG----TAAGTTGTCCAA--GGTCTGTGATCTCACCAGTAG
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19218523 43 -  22931326 ACAA---GAGTCAGTAA-CAGTCAAA--CATCTATGATCCCGGGAGGAC
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2812487 43 -   6207710 ACAA---GAGTCAGTAA-TAGTCAAA--CGTCTATGATCCCGGGAGGAC
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10848263 45 +  17242564 ACAAGATGAGTTGACAAGTAGTCCAA--TGTGTGTAATCTCAGAAGG--
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84042484 47 +  91571448 ACAAGATGAGTCAATAAGTTGTCAAA--GGTCTGTAATCTCACAAGGAG
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6816208 47 -  14545593 ACAAGATGAGTCAATAAGTAGTCAAA--GGTCTGTAATCTCACAAGGAG
i cerSim1.JH767782             C 0 I 7180
s felCat8.chrA3                134113868 47 + 140925898 ACAAGATGAGGCCACATGGAGTCAAA--GGCGAGCGATCTCACAAGGAG
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57846537 47 -  64289059 ACAAGATGAGAGAGTAAGTAGTCAAA--GGTCTGCAATCTCACAAGGAG
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13618790 47 -  19722643 ACAAGATGAGTCAGTAAGTAGTCAAA--GGTTTGTGATCTCACAAGGAG
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3041489 47 +   4816872 ACAAGATGAGTCAGTAAGTAGTCAAA--GGTCTGTAATCTCACAAGGAG
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19418811 46 -  23789964 ACAAGATGAGTCAGTAAGTCCTC-AA--GGCCTGTAATCTCACAAGGAG
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27627959 47 -  46401353 ACTAGATAAGTCAGTAAGTGGTCAAC--GTTCTGTGATCTCACAGGTAG
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9974488 47 +  24341844 ACAATATGAGTCAGTAAACGGTCAGA--GGTCTGTGATCTCACAGGTAG
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1039949 47 -   2788317 ACAAGATGATTCAGTAAGTGGTCAAA--GGTCTGTAATCTTACTAATAG
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530538857 25 + 748055161 -------------------GGTC-----TGTTTATATTTCCATGGGTAG
i monDom5.chr1                 C 0 C 0
s lepOcu1.chrLG4                61527584 39 -  73198282 ACAGTTTAGa--------cattcaagtttatttgtcattctagccat--
i lepOcu1.chrLG4               C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e ornAna1.Contig53964                668  0 -      2070 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221220               3809684  0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH737491                498705 1755 -    628740 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e sarHar1.chr3_GL849915_random   3907644 1436 +   4730170 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=46908.000000
s hg38.chr8_KI270814v1_alt         88460 6 +    141812 AAATAA
s ponAbe2.chr8                  59057984 6 + 153482349 AAATAA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48136658 6 + 100215132 AAATAA
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99349701 6 + 108792865 AAATAA
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24016020 6 +  27210278 AAATAA
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21195943 6 -  23169006 AAATGA
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19218566 6 -  22931326 AAGTAG
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2812530 6 -   6207710 AAGCAG
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10848308 2 +  17242564 ----AG
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84042531 6 +  91571448 AAATAA
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6823435 6 -  14545593 AAATAA
i cerSim1.JH767782             I 7180 C 0
s felCat8.chrA3                134113915 6 + 140925898 AAATAC
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57846584 6 -  64289059 AAATAA
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13618837 6 -  19722643 AAATAA
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3041536 6 +   4816872 AAATAA
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19418857 3 -  23789964 --ATA-
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27628006 6 -  46401353 AAAGAC
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9974535 6 +  24341844 AAAGAA
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1039996 6 -   2788317 AAATGA
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530538882 5 + 748055161 -AATAC
i monDom5.chr1                 C 0 C 0
s lepOcu1.chrLG4                61527623 6 -  73198282 atacaa
i lepOcu1.chrLG4               C 0 N 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e ornAna1.Contig53964                668 0 -      2070 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221220               3809684 0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH737491                498705 1755 -    628740 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e sarHar1.chr3_GL849915_random   3907644 1436 +   4730170 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929605                579960 0 +   1015623 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736 1 +    779542 I
e pelSin1.JH207189               1424965 0 +   1874153 I
e melUnd1.JH556573                751858 2 +  10614383 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=172758.000000
s hg38.chr8_KI270814v1_alt         88466 18 +    141812 AATGATTCAGTC---AGTGGG
s ponAbe2.chr8                  59057990 18 + 153482349 AATGATTCAGTC---AGTGGG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48136664 18 + 100215132 AATGATTCAGTC---AGTGGG
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99349707 18 + 108792865 GATGATTCAGTC---AGTGGG
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24016026 18 +  27210278 GATGATTCAGTC---AGTGAG
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21195949 18 -  23169006 AATGATTCAGTC---AGTGGC
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19218572 13 -  22931326 AATGATTCAGTC---G-----
i vicPac2.KB632437             C 0 I 8
s camFer1.KB017763               2812536 13 -   6207710 AATGATTCAGTC---G-----
i camFer1.KB017763             C 0 I 7
s orcOrc1.KB316907              10848310 16 +  17242564 AATGATTCAGTCGTGG-----
i orcOrc1.KB316907             C 0 I 8
s equCab2.chr15                 84042537 18 +  91571448 AATGATTCAGTC---AGCAGG
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6823441 18 -  14545593 AATGATTCAGTC---GGTGGG
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134113921 18 + 140925898 AACGATTCAGTT---GGTAGG
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57846590 18 -  64289059 AATGATTCAATT---GGTGGG
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13618843 18 -  19722643 AATGATTCAGTC---GGTGGG
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3041542 17 +   4816872 AATGATTCCGTT----GTGGG
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19418860 18 -  23789964 AATGATTCAGCT---GGCGGG
i pteAle1.KB030580             C 0 I 25
s loxAfr3.scaffold_20           27628012 18 -  46401353 AATGATTCAGTC---ATTGGG
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9974541 18 +  24341844 AATGATTCAGTC---AGGGGG
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1040002 18 -   2788317 AATGATTGGGTC---AATGGA
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530538887 18 + 748055161 AATGAGTTAGTC---AGACAG
i monDom5.chr1                 C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e ornAna1.Contig53964                668  0 -      2070 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221220               3809684  0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH737491                498705 1755 -    628740 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e sarHar1.chr3_GL849915_random   3907644 1436 +   4730170 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=70961.000000
s hg38.chr8_KI270814v1_alt         88484  8 +    141812 ------------GCAGGC-AG---
s ponAbe2.chr8                  59058008  8 + 153482349 ------------GCAGGC-AG---
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48136682  8 + 100215132 ------------GCAGGC-AG---
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99349725  8 + 108792865 ------------GCAGGC-AG---
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24016044  8 +  27210278 ------------GCAGGC-AG---
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21195967  8 -  23169006 ------------GCAGGT-GG---
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19218593  8 -  22931326 ------------GCAGAC-AG---
i vicPac2.KB632437             I 8 C 0
s camFer1.KB017763               2812556  8 -   6207710 ------------GCAGAC-AG---
i camFer1.KB017763             I 7 C 0
s orcOrc1.KB316907              10848334  8 +  17242564 ------------GCAGAC-AG---
i orcOrc1.KB316907             I 8 C 0
s equCab2.chr15                 84042555  8 +  91571448 ------------GCAGGC-AG---
i equCab2.chr15                C 0 I 1
s cerSim1.JH767782               6823459  8 -  14545593 ------------GCAGGC-AG---
i cerSim1.JH767782             C 0 I 1
s felCat8.chrA3                134113939  8 + 140925898 ------------GCAGAC-AG---
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57846608  8 -  64289059 ------------GCAGAC-AG---
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13618861  8 -  19722643 ------------GCAGAC-AA---
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3041559  8 +   4816872 ------------GCAGAC-CG---
i odoRosDiv1.KB229025          C 0 C 0
s loxAfr3.scaffold_20           27628030  8 -  46401353 ------------ACAGAC-GG---
i loxAfr3.scaffold_20          C 0 I 1
s triMan1.JH594629               9974559  8 +  24341844 ------------GAAGAC-AG---
i triMan1.JH594629             C 0 I 1
s dasNov3.JH567436               1040020  9 -   2788317 ------------GCAGGCAGG---
i dasNov3.JH567436             C 0 I 1
s monDom5.chr1                 530538905 23 + 748055161 GTCAGGTTAAAGGCAAAA-GGCAA
i monDom5.chr1                 C 0 I 11
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e ornAna1.Contig53964                668  0 -      2070 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221220               3809684  0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH737491                498705 1755 -    628740 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e sarHar1.chr3_GL849915_random   3907644 1436 +   4730170 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e pteAle1.KB030580              19418878 25 -  23789964 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=246545.000000
s hg38.chr8_KI270814v1_alt         88492 49 +    141812 CAAACAAGGCTATTA-----GATATAAAGAACAAAATCATTAAGCTAATGTCAC
s ponAbe2.chr8                  59058016 48 + 153482349 C-AACAAGGCTATTA-----GATATAAAGAACAAAATCATTAAGCTAATGTCAC
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48136690 49 + 100215132 CAAACAAGGCTATTA-----GATATAAAGAACAAAATCATTAAGCTAATGTCAC
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99349733 49 + 108792865 CATACAGGGCTATTA-----GACATAAAGAACAAAATCATTATGCTAATGTCAC
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24016052 49 +  27210278 CATACAGGGCTACTA-----GACATAAAGAACAAAATCATTATGCTAATGGCAC
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21195975 49 -  23169006 CAGCCCGGACTATTA-----GATATCAAGTACAAAATCATTATGCTAATGTCAC
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19218601 41 -  22931326 -------GGCCATCA-----GAGATCA-GAACAGCCTCGTTGTGCTAATGTCAC
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2812564 41 -   6207710 -------GGCTATCA-----GAGGTCA-GAACAGCCTCGTTGTGCTAATGTTAC
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10848342 37 +  17242564 -------GGCTATCA-----GAGATCGCGAGCAGCC----TGCG-TAACGTCAT
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84042564 49 +  91571448 CAAGCAGGGCTATCA-----GAAACCAAGAACCACCTCAGGATGCTAATGTCAC
i equCab2.chr15                I 1 C 0
s cerSim1.JH767782               6823468 49 -  14545593 CAGGCAGGGCTATCA-----GAGACCAAGAACCACCTCGGTATGCTAATACCAC
i cerSim1.JH767782             I 1 C 0
s felCat8.chrA3                134113947 48 + 140925898 ---GGCTAG--AACAACCTCAAGATCAAGAACAACCTCA-TATGCCCTTGCCAC
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57846616 41 -  64289059 --------GCTGGCA-----GAAATCAAGAAGAACCTCAGTATGCTACTGCCAC
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13618869 46 -  19722643 ---GGCTAGTGAGCG-----GAGAGCAAGAAAAACCTCAGTACGTGATTGCAAC
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3041567 46 +   4816872 ---GGCTAGCTAGCA-----GAGATCAAGAACAACCTGAGCATGCGACTGCCAC
i odoRosDiv1.KB229025          C 0 C 0
s loxAfr3.scaffold_20           27628039 49 -  46401353 CGGACAAGGCTACCA-----GAGACCTAGAGCAAATTTGTCATGCTAATGACAG
i loxAfr3.scaffold_20          I 1 C 0
s triMan1.JH594629               9974568 49 +  24341844 CAGATAAGGCTACCA-----GAGACCTAGAACAAACCTGTCATACCAATGACAC
i triMan1.JH594629             I 1 C 0
s dasNov3.JH567436               1040030 47 -   2788317 CAGAACAGGCTAAC-------AAATCAAAAACAAAACTGCTACGCTAATGCCAC
i dasNov3.JH567436             I 1 C 0
s monDom5.chr1                 530538939 49 + 748055161 CAGATGAGGTCATTA-----GACACCAACAATAAAATCATTATGTTGATATCAT
i monDom5.chr1                 I 11 C 0
s sarHar1.chr1_GL834688_random    533558 49 +   3395230 CAGGCAAGGCTAGTA-----GTCATCAACAATAAAAACATCATGTTGATGTCAT
i sarHar1.chr1_GL834688_random I 8404 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e ornAna1.Contig53964                668  0 -      2070 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221220               3809684  0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH737491                498705 1755 -    628740 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e pteAle1.KB030580              19418878 25 -  23789964 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-6100.000000
s hg38.chr8_KI270814v1_alt         88541  8 +    141812 AGCTG------ATT-
s ponAbe2.chr8                  59058064  8 + 153482349 AGCTG------ATT-
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48136739  8 + 100215132 AGCTG------ATT-
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99349782  8 + 108792865 AGCTG------ATT-
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24016101  8 +  27210278 AGCTG------ACT-
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21196024  8 -  23169006 AGCTG------ATT-
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19218642  4 -  22931326 ---CG-------CT-
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2812605  4 -   6207710 ---CG-------CT-
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10848379  4 +  17242564 ---AG-------AT-
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84042613  7 +  91571448 AG-CG------ATT-
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6823517  7 -  14545593 AG-TG------ATT-
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134113995  5 + 140925898 ---CG------ACC-
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57846657 11 -  64289059 ---TGTTCACCATT-
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13618915  5 -  19722643 ---CG------ACT-
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3041613  5 +   4816872 ---CG------AAT-
i odoRosDiv1.KB229025          C 0 C 0
s loxAfr3.scaffold_20           27628088  8 -  46401353 AGCTG------ATT-
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9974617  8 +  24341844 AATTG------ATT-
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1040077  8 -   2788317 AGAAA------ATT-
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530538988  8 + 748055161 AGTAG------ATT-
i monDom5.chr1                 C 0 I 3149
s sarHar1.chr1_GL834688_random    533607  8 +   3395230 AACCT------ATT-
i sarHar1.chr1_GL834688_random C 0 I 5587
s xenTro7.KB021650              53422336  9 + 150913983 agttg------tatc
i xenTro7.KB021650             N 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e ornAna1.Contig53964                668  0 -      2070 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221220               3809684  0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH737491                498705 1755 -    628740 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e pteAle1.KB030580              19418878 25 -  23789964 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=461931.000000
s hg38.chr8_KI270814v1_alt         88549 127 +    141812 AGCAAACAAAGATAGACA----GGAAGACAC------AGAT--GGG--GAAATAGAGCCTTCCAA-------ACAGTCATCTCTTCACATTCTCCTTCCTGAT------TTTTTTTC--------------------AG---------------------TCTTAAAATCCCTTGCCT--GTAGCTCTGTCAC-------------------TTCC
s ponAbe2.chr8                  59058072 127 + 153482349 AGCAAACAAAGATAGACA----GGAAGACAC------AGAG--GGG--GAAATAGAGCCTTCCAA-------ACAGTCATATCTTCACATTCTCCTTCCTAAT------TTTTTTTC--------------------AG---------------------TCTTAAAATCCCTTGCCT--GTAGCTCTGTCAC-------------------TTCC
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48136747 126 + 100215132 AGCAAACACAGATAGACG----GGAAGACAC------AGAG--GGG--GAAATAGAGCCTTCCAA-------ACAGTCATCTCTTCACATTTTCCTTCCTAA-------TTTTTTTC--------------------AG---------------------CCTTAAAATCCCTTGCCT--GTAGCTCTGTCAC-------------------TTCC
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99349790 150 + 108792865 AGCAAACAAAGATAGACC----AGAAGGCAC------AGAG--AGG--GGAACAGAGCCAGCCAA-------ACAGCCATCTTTTCACAATGTCCTTCCTAATA----TTTTTTTTT--------------------GGTGGGGGCAATGGTGGTGGGGATCTGAAAACTCCTTGCCT--CTAGCTCTGTCAC-------------------TTCC
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24016109 147 +  27210278 AGCAAACAAAGATAGACC----AGAAGGCAC--------AG--AGG--GGAACAGAGCCAGCCAA-------ACAGCCATCTCTTCACAATGTCCTTCCTAATA-----TTTTTTTT--------------------GGTGGGGGCAATGGTGGTGGGGATCTTAAAACTCCTTGCCT--CTAGCTCCATCAC-------------------TTCC
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21196032 128 -  23169006 AGCAAACAAAGACA---------GGAGATGG------AGGG--GAG--GGAACAGAGCCAGCCAA-------TTAGCCATGTCTTCACAGTGTCCTTCATAATAACTATGCTTGTTT--------------------TG---------------------TCTTAAAATTCCTCGCCT--CTAGCTCTGTCAC-------------------TTTC
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19218646 153 -  22931326 GATCAGCAAAGATGGACA----AGGAGGTGG-GGCGGGGGT--AGG--GGGATGCAGTCGGACAA--------TGGCCAGCTTTCCATGTTGTTCTTTCTAA----TTTTTTTTTTCC-------------------CG---------------------TCTTAAAATTCCTGGATT--CTAGTTCTGCTACCTCCATACTCTCGAAAATCTTTC
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2812609 155 -   6207710 GACCAGCAAAGATGGACA----AGGAGGGGT-AGGGGGGGT--AGG--GGGATGCAGTAGGACAA--------CGGCCAGCTTTCCACGTTGTTCTTTCTAAT--TTTTTTTTTTTCC-------------------GG---------------------TCTTAAAATTCCTGGATT--CTAGCTTTGCTACCTCCATACTCTCAAAAATCTTTC
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10848383 161 +  17242564 GATTAGCAAAGACAGACAGACCAGGAGATGG-GGCAGGGGT--GGG--GGAATATCGCCAGGCAA--------TAGCCGTCTTTCCACATGGGTCTTCCTAATTATTCTATTTTTTGCAGGGGAG--------AGGGGG---------------------TCTTAAAACTCCTTGACCCGCGAGCTTTG-------------CCTAAAAATCTTTC
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84042620 150 +  91571448 GGCAAACAAAGACAGACA----AGGAGATTG---GGGGGCT--AGG--GAGACATAG-CGGCCAA--------GAGCCATATTT-CATGCTTTTCTTCCTAATTATTTTATCATTCT--------------------GG---------------------TCTTAAAATTCCTTGACT--CT--CTCTGTTACTTCCATACTCTCCAAAATCTTCC
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6823524 150 -  14545593 AGCAAACAAAGATAGACA----AGGAGATTG---GGGTGTA--GGG--GAGATATAGCCAGCCAA--------TAGCCATCTTTCCACGCTGTTCTT----GTTATTTTATTGTTTT--------------------GG---------------------TCTTAAAATTTCTTGACT--CTAGCTTTGTTACTTCCATACTCTCTAAAATCTTCC
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134114000 153 + 140925898 GGGGAACTAAAATGGACA----AAGAGATGAGGTGGGGACT--GGG-AGAGACAGAGCCAGCCAA--------CAGCTGTCTTTCCGTGATGTTCTTCCTAATTATTTTACGTTTTT--------------------GG---------------------TCTTAAAATTCCTGGCCT--CTAGCTTTGTCACTTCCATACTCTGTA-----TTTG
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57846668 151 -  64289059 CGTGAACCAAAATGGGAA-------AGATTA-GTGGGGGCT--GGG--GAGACAGAGCCAGCCAA--------CAGCCATCTTTCCATGCTATTCTTCCTAATTTT---------GG--------------------GGTGGGGGTA-------------T-TAAAAATTCCTGGACT--CTAGCTTTGTCACTTCCATACTCAGTAAAATCTTTC
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13618920 158 -  19722643 GGGGAACAGACACCGACA----AGGAGATGA-GTGGGGGGG--GGG------CATAGCCATCCAA--------AAGCCACCCTTCCGTGCTGCTCTTCCTA-TTTTTTTGTGGTGGG--------------------GGTGGGGGTG-------------TCTTAAAATTCCTTGTCC--CT-GCTTTGTCACTTCCATACTCTATAAAATCTTTC
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3041618 166 +   4816872 GGTGAACGAACATGGACA----AGGAGATGA-GTGGAGGTG--GGGGGAAGACAGAGCCAGGCAA--------CAGCCACCTTTCCATGCTATTCTTCCTATTTTTTTTGTTGTTGT--------------------TGGGGGGGTT-------------CCTTAAAATTCCTTGTCC--TTAGCTTTGTCACTTCCATACTCTGTAAAACCTCCC
i odoRosDiv1.KB229025          C 0 C 0
s loxAfr3.scaffold_20           27628096 141 -  46401353 AGGAAATAAAGATAGACC----AGGAAATAA------------GAG--GGTATACGGCCAGCCAA-------TCAGCCACCTTTTCATGCTGTTCCCCTTAAATATCTCTTTTTTTGGGCGGGGA--------CAGGGG---------------------GCTTAAAATTTCTTGACT--CTAGCTTCCTCAA-------------------CACC
i loxAfr3.scaffold_20          C 0 I 26
s triMan1.JH594629               9974625 153 +  24341844 AGCCAACTAAGATAGACT----AGGGGACAG------AGAT--GGG--GGAATACAGCCGGCCAA-------TCAGCTAGCTTTTCAAGCTGTTCCTCCTAATTACCCTTTTTTTGGGGGGGTGAGGGGAGTGGAGGGG---------------------CCTTAAAATTCCTTGACT--CTAGCTTTCTCAA-------------------TTCC
i triMan1.JH594629             C 0 I 370
s dasNov3.JH567436               1040085 131 -   2788317 AGCAAACAAAGAAGGACA----AGGAGATGG------AGACAGAGA--GGACTATAGCCAGCGAA-------TCAGTCCTCTTTTCACACTGTTCTTCTTAATTATTTTTTTC------------------------AG---------------------TCTTAAAACTCCTTGACT--CTAGTTTTTTCAT-------------------TTCC
i dasNov3.JH567436             C 0 I 37
s xenTro7.KB021650              53422345 139 + 150913983 gggacataaaaagggtcc----tgaagaaaa-agctggcag--agg--cctccagatacaggtaaatatcttacattcatctttctatttaacactcgctcatctgcttttctactc--------------------ag---------------------ccgg------cttttcct--ttggcttattgac-------------------tttc
i xenTro7.KB021650             C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e ornAna1.Contig53964                668   0 -      2070 I
e tetNig2.chr10                  6379385   0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382   0 -   6649201 I
e hapBur1.JH425491                252157   0 -   1273513 I
e neoBri1.JH422308               3491820   0 -   5414369 I
e araMac1.AOUJ01470298               637   0 -       895 I
e takFla1.AOOT01113665               306   0 +       323 I
e fr3.HE591725                    289786   0 -    411779 I
e ficAlb2.chr2                 148476508   0 + 157563209 I
e anoCar2.chr1                 148577473   4 + 263920458 I
e pseHum1.KB221220               3809684   0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214   0 -  25666195 I
e allMis1.JH737491                498705 1755 -    628740 I
e falPer1.KB390952               2753956   0 -  18327016 I
e falChe1.KB397350               1707310   0 -   3649919 I
e macEug2.GL109592                105897   0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802   0 +   2102797 I
e sarHar1.chr1_GL834688_random    533615 5587 +   3395230 I
e melGal1.chr7                  34310641   0 -  38723565 I
e anaPla1.KB742696               1254472   0 -   1270250 I
e amaVit1.AOCU01222764              1324   0 -      1397 I
e apaSpi1.KB929605                579960   0 +   1015623 I
e cheMyd1.KB605988                134509   0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736   1 +    779542 I
e pelSin1.JH207189               1424965   0 +   1874153 I
e melUnd1.JH556573                751858   2 +  10614383 I
e monDom5.chr1                 530538996 3149 + 748055161 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e pteAle1.KB030580              19418878  25 -  23789964 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=18899.000000
s hg38.chr8_KI270814v1_alt         88676  9 +    141812 C-ACCTTCTC---
s ponAbe2.chr8                  59058199  9 + 153482349 C-ACCTTCTC---
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48136873  9 + 100215132 C-ACCTTCTC---
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99349940  9 + 108792865 C-ACTTTCCC---
i calJac3.chr14                C 0 I 1
s saiBol1.JH378126              24016256  9 +  27210278 C-ACTTTCCC---
i saiBol1.JH378126             C 0 I 1
s otoGar3.GL873541              21196160  3 -  23169006 C-CC---------
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19218799 10 -  22931326 CCATCTTCCC---
i vicPac2.KB632437             C 0 I 5
s camFer1.KB017763               2812764 10 -   6207710 CCATCTTCCC---
i camFer1.KB017763             C 0 I 5
s orcOrc1.KB316907              10848544 10 +  17242564 CCCCCTTCCC---
i orcOrc1.KB316907             C 0 I 5
s equCab2.chr15                 84042770 10 +  91571448 CGACCTTCCC---
i equCab2.chr15                C 0 I 5
s cerSim1.JH767782               6823674 10 -  14545593 CCACCTTCCC---
i cerSim1.JH767782             C 0 I 5
s felCat8.chrA3                134114153  9 + 140925898 C-ACCTCCCC---
i felCat8.chrA3                C 0 I 5
s canFam3.chr17                 57846819  9 -  64289059 C-ACTTTCCC---
i canFam3.chr17                C 0 I 5
s musFur1.GL896914              13619078  9 -  19722643 T-ACTTTCCC---
i musFur1.GL896914             C 0 I 5
s odoRosDiv1.KB229025            3041784  9 +   4816872 C-ACTTTCCC---
i odoRosDiv1.KB229025          C 0 I 5
s loxAfr3.scaffold_20           27628263  9 -  46401353 -CCCCTacac---
i loxAfr3.scaffold_20          I 26 I 144
s dasNov3.JH567436               1040253  9 -   2788317 -CCCCCTCCC---
i dasNov3.JH567436             I 37 I 22
s xenTro7.KB021650              53422484  9 + 150913983 ----cttcctttt
i xenTro7.KB021650             C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e ornAna1.Contig53964                668  0 -      2070 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221220               3809684  0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH737491                498705 1755 -    628740 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e sarHar1.chr1_GL834688_random    533615 5587 +   3395230 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530538996 3149 + 748055161 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e triMan1.JH594629               9974778 370 +  24341844 I
e pteAle1.KB030580              19418878 25 -  23789964 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=9809.000000
s hg38.chr8_KI270814v1_alt         88685 19 +    141812 ----CA------------------------CC-TCTCAGTTCACA-----GGT
s ponAbe2.chr8                  59058208 19 + 153482349 ----CA------------------------CC-TCCCAGTTCACA-----GGT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48136882 19 + 100215132 ----CA------------------------CC-TCCCAGTTCACA-----GGT
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99349950 19 + 108792865 ----CA------------------------CC-CCCCAGTTTACA-----GGT
i calJac3.chr14                I 1 C 0
s saiBol1.JH378126              24016266 19 +  27210278 ----CA------------------------CC-CCCCAGTTCACA-----GGT
i saiBol1.JH378126             I 1 C 0
s otoGar3.GL873541              21196163 11 -  23169006 ----CA------------------------C---------TCATA-----GGT
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19218814 20 -  22931326 ----CA------------------------CT-TCCCTGCCCACA----GGGG
i vicPac2.KB632437             I 5 C 0
s camFer1.KB017763               2812779 20 -   6207710 ----CA------------------------CT-TCCCTGCCCACA----GGGG
i camFer1.KB017763             I 5 C 0
s orcOrc1.KB316907              10848559 21 +  17242564 ----CG------------------------CTCCCCCTGCCCACA----GGGT
i orcOrc1.KB316907             I 5 C 0
s equCab2.chr15                 84042785 21 +  91571448 ----AA------------------------CTTCCTCAGCTCACA----GGGG
i equCab2.chr15                I 5 C 0
s cerSim1.JH767782               6823689 21 -  14545593 ----AA------------------------CTTCCTCGGCTCCCA----GGGG
i cerSim1.JH767782             I 5 C 0
s felCat8.chrA3                134114167 20 + 140925898 ----TG------------------------CTGCCTCAGCTCACA-----GGG
i felCat8.chrA3                I 5 C 0
s canFam3.chr17                 57846833 21 -  64289059 ----TG------------------------CTTCCTCAGCCCACA----GGGG
i canFam3.chr17                I 5 C 0
s musFur1.GL896914              13619092 21 -  19722643 ----TG------------------------CTTCCTGAGCTCCCA----GGGG
i musFur1.GL896914             I 5 C 0
s odoRosDiv1.KB229025            3041798 21 +   4816872 ----TG------------------------CTTCCTCAGCTCCCA----AGGG
i odoRosDiv1.KB229025          I 5 C 0
s loxAfr3.scaffold_20           27628416 44 -  46401353 ----CAGGTCGCGGTGGCCCCTTATACACACT-CTTCAGCTCACA----GGGA
i loxAfr3.scaffold_20          I 144 C 0
s triMan1.JH594629               9975148 20 +  24341844 ----CA------------------------CT-CTTCAGCTCACA----GGGA
i triMan1.JH594629             I 370 C 0
s dasNov3.JH567436               1040284 18 -   2788317 ----TATATCAT------------------CT-ATCTGGCC------------
i dasNov3.JH567436             I 22 C 0
s xenTro7.KB021650              53422493 28 + 150913983 tggctg------------------------ct-ttcctacttactttactggt
i xenTro7.KB021650             C 0 N 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e ornAna1.Contig53964                668  0 -      2070 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221220               3809684  0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH737491                498705 1755 -    628740 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e sarHar1.chr1_GL834688_random    533615 5587 +   3395230 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530538996 3149 + 748055161 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e pteAle1.KB030580              19418878 25 -  23789964 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=188888.000000
s hg38.chr8_KI270814v1_alt         88704 54 +    141812 CACCCTCTCCCCTGCTCTCT--------GGCCGTTGGT---TACCAGA----TGCTGATCCAGCCAAAG
s ponAbe2.chr8                  59058227 54 + 153482349 CACCCTCTCCCCTGCTCTCT--------GGCCACTGGT---CACCAGA----TGCTGATCCAGCCAAAG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48136901 54 + 100215132 CACCCTCTCCCCTGCTCTCT--------GGCCACTGGT---CACCAGA----TGCTGATCCATCCAAAG
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99349969 46 + 108792865 CACCCTCT---CTGTTCTCT--------AGCCAGGGGT---CAACAGC----TACTGATCCAGC-----
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24016285 46 +  27210278 CACCCTCT---CTGTTCTCT--------GGCCAGTGGT---CAACAGC----TGCTGATCCAGC-----
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21196174 46 -  23169006 CACCTTGC---CTGCTCTCT--------GGTCGCTGGT---CACCAGA----TGCTCTGCTACT-----
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19218834 57 -  22931326 CA------TGGCTGCTCCTTCAGCTC--GGTCACTGGTTACCAGCAGC----TGCTGATCCAGCCAGAG
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2812799 40 -   6207710 CA-----------------------C--GGTAACTGGTTATCAGCAGC----TGCTGATCCAGCCAGAG
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10848580 63 +  17242564 CAGTGTCTCGGCGGCTCCTTTGGCTC--TGTCACCGGTTACCCTCAGC----TGCCCATCCAGCCAGAG
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84042806 64 +  91571448 CACTGTCTCACCTGCTCCTTTAGCCCCTGGTCACTGGTTACCACCAGC----TGCTGATC-AGCCAAAG
i equCab2.chr15                C 0 I 11
s cerSim1.JH767782               6823710 64 -  14545593 CACTGTCTCGCCTGCTCCTTTAGCCCC-GGTCACTGGTTACCACCAGT----TGCTGATCTGGCCAAAG
i cerSim1.JH767782             C 0 I 11
s felCat8.chrA3                134114187 50 + 140925898 TGCCATCTCACCTGCTACCTTAGCTCT-AGTCGCTGGTG------------------ATCCAGCCAGAG
i felCat8.chrA3                C 0 I 12
s canFam3.chr17                 57846854 64 -  64289059 CACCATCTCGCCTGCTCCTTTAGCTCC-CATCACTAGTGACCACCTGT----TGCTAATCCAGCCAAAG
i canFam3.chr17                C 0 I 161
s musFur1.GL896914              13619113 64 -  19722643 CACCGCCTCACCTGCTCCTTTAGCTCT-GGCCACAGGTGACCACCTGC----TGCTGACCTGGCCAAGG
i musFur1.GL896914             C 0 I 11
s odoRosDiv1.KB229025            3041819 63 +   4816872 CACCATCCCGCCTGCTCCTTTAGCTC--GGTCACTGGTGACCACCTGC----TGCTGACCCAGCCAAGG
i odoRosDiv1.KB229025          C 0 I 11
s loxAfr3.scaffold_20           27628460 52 -  46401353 -----------GCACTG-GCTCACACA-GGTAACTGGCCACCACCAGT----TGCCGACCCAGCCAAAG
i loxAfr3.scaffold_20          C 0 I 6
s triMan1.JH594629               9975168 53 +  24341844 -----------GCGCTGTTCTCACTCA-GGTAACTGGCCATCACCAGT----TGCTGACCCAGCCAAAG
i triMan1.JH594629             C 0 I 6
s dasNov3.JH567436               1040302 56 -   2788317 ------------TGCTCTTTTAGCTCC-AGTCCCTGGCCACTGCCAATTAACTGCTGACCCTGCCAAAG
i dasNov3.JH567436             C 0 I 5
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e ornAna1.Contig53964                668  0 -      2070 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221220               3809684  0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH737491                498705 1755 -    628740 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e sarHar1.chr1_GL834688_random    533615 5587 +   3395230 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530538996 3149 + 748055161 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e pteAle1.KB030580              19418878 25 -  23789964 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=523004.000000
s hg38.chr8_KI270814v1_alt         88758 132 +    141812 TGTGGCAGGCAGTCCCA-C-CC-------------------------CA-----------------G-GGAGCTGCGGTGCTG--CCTTCTCTTTGACTTAGGCAGTGAGTAAGTCTGCTTTGCCAAATGACCTTGCCCAAAGGGATCCATCT-AGAAGCCTGAAGCTAGACAGAATTTT
s ponAbe2.chr8                  59058281 132 + 153482349 TATGGTAGGCAGTTCCA-C-CC-------------------------CA-----------------G-GGAGCTGCGGTGCTG--CCTTCTCTTTGACTTAGGCAGTGAGTAAGTCTGCTTTGCCAAATGACCTTGCCCAAAGGGATCCATCT-AGAAGCCTGAAGCCAGACAGAATTTT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48136955 132 + 100215132 TGTGGTAGGCAGTCCCA-C-CC-------------------------CA-----------------G-GGAGCTGCGGTGCTG--CCTTCTCTTTGACTTAGGCAGTGAGTAAGTCTGCTTTGCCAAATGACCTTGCCCAAAGGGATCCATCT-AGAAGCCTGAAGCTAGACAGAATTTT
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99350015 117 + 108792865 -------------TCCA-T-CT-------------------------CC-----------------G-GGAGCTGCAGTGCTG--CCTTCTCTTTGACTTAGGCAGTGAGTAATTCTGCTTTGCCAAATGATCTTGCCCAAAGGGATCCATCT-AGAAGCCTGAAGCT--ACAGGATTCT
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24016331 113 +  27210278 -------------TCCA-C-CC-------------------------CC-----------------G-GGAGCTGCAGTGCTG--CCTTCTCTTTGACTTAGGC----AGTAATTCTGCTTTGCCAAAAGATCTTGCCCAAAGGGATCCATCT-AGAAGCCTGAAGCT--ACAGGATTCT
i saiBol1.JH378126             C 0 I 314
s otoGar3.GL873541              21196220 110 -  23169006 -----------GATGCT-C-CC-------------------------C------------------------CTACCATGCAGCCCCTTCTCTTTTACTTAG----TGAGTA---TTGTTTGCTCAAATGATTGTGCCCAAAGGGAGTCAACC-AGAAGCCTGACCCAAAACAGGATCCT
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19218891 119 -  22931326 ------------CTCCA-C-CC-------------------------TGGATCCAGCCTGATCCCTG-GGAACCCCAGCGCTG-----CCTTCTTGACTTTGGTCCTGAGTACACCGGCTCTGCC-------CT-------GGGGATCGGTCC-AGAAGTCTGAA-CTAGACAGGATTCT
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2812839 119 -   6207710 ------------CTCCA-C-CC-------------------------TGGATCCAGCCTGATCCCTG-GGAACCCCAGTGCTG-----CCTTCTTGACTTTGGTCCTGAGTACACCGGCTCTGCC-------CT-------GGGGATCAGTCC-AGAAGTCTGAA-CTAGACAGGATTCC
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10848643  95 +  17242564 ------------CTCCGCC-CC-------------------------TGGTTCCAGCCTGA-CCCCG-GGAACCCCAGTGCTG-----CCTTCT---CCTTGG-----------------------------CT-------GGGGGTCTGTCG-AGAAGCCTGAACCTAGACAGGATTTT
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84042881 129 +  91571448 ------------GCCCA-C-CT-------------------------GCAGCCGTGCCTCA-----G-GGAACCACAGTGCTG--CC-TCTCC-TGACTTAGGCAATGAGTAAGTCTGCTTTGCCAAATGATCTTGCCCA-GGGGATCCGTCT-AGAAGCCTCAACCTAGATAGGATTCT
i equCab2.chr15                I 11 C 0
s cerSim1.JH767782               6823785 130 -  14545593 ------------TCCCA-C-CT-------------------------GCCGTGGTGCCCCA-----G-GGAACCACAGTGCTG--CT-TCTCCATGACTTAGGCAATGAGTAAGTTTGCTTTGCCAAACGATCTTGCCCA-GGGGATCCATTT-AGAAGCCTGAAACTAGACAGGATTCT
i cerSim1.JH767782             I 11 C 0
s felCat8.chrA3                134114249 118 + 140925898 ------------TCCCA-CGTG-------------------------TACAACCGACCCCG-----G-GGAACCTCAGTGCTG--CCTTCTCCTTGACTTAGGCA--GAGCAAGATGGCCTTGCCAAA-------------GGAGATCCATCT-AGAAGCCTGAACCTAGACAGGATGCT
i felCat8.chrA3                I 12 C 0
s canFam3.chr17                 57847079 152 -  64289059 ------------tctcc-c-tggcaaaaggagcagGGTGGAGAAGTATACAACATGCCC-------T-GGGACCTCGGTGCTG-----CCTCCTTAACTCAGGCAATGAGCAAAATGGCTTTGCCAGGTGATCTTGCTAAAGGGGATCCATCT-AGAAGCCTGAACCTAGACAGGATACT
i canFam3.chr17                I 161 C 0
s musFur1.GL896914              13619188 101 -  19722643 ------------TCCCA-C-TG-------------------------TAAACCCTGCCT-------G-GGAACCTCAGTGCTG--CCACCTCTTTGACTTAGGCAATGAGGAAACTGGCTCTGCCAAGT------------GAGAAT------------------CCCAGACAGGATTCT
i musFur1.GL896914             I 11 C 0
s odoRosDiv1.KB229025            3041893 130 +   4816872 ------------TCCCA-C-TG-------------------------TACAACTCGCCT-------G-GGAACCTCAGTGCTG--CCTCCTCCTTGACTTAGGCAATGAGCAAGATGGCTCTGCCAAATGACCTTGCCCAAGAGGATCCATCT-AGAAGCCTGAACCTAGACAGGATTCT
i odoRosDiv1.KB229025          I 11 C 0
s loxAfr3.scaffold_20           27628518 136 -  46401353 ------TGCTGGTCCTT-C-CT-------------------------TGCGGCCCCACCCC-----A-CGAACGGAGGTGCT---TTTTCTCCTTGACTCAGGCAATGAGTAATTCTGCTTTGCCAAATGAATTTCCCCAAGGGGATC-ATCT-AAAAGCCAGAACCTAGACAGGATTCT
i loxAfr3.scaffold_20          I 6 C 0
s triMan1.JH594629               9975227 136 +  24341844 ------TGCTGGTCC-T-C-CT-------------------------TGCAGCCCCACCCC-----A-GGAACTGAGGAGCTG--CCTTCTCCTTGACTCAGGCAATGAGCAATTCTGCTTTCCCGAATGATCTTCCCCAAGGGGTTC-ATCC-AGAAGCCAGAACCTAGACAGGATTCT
i triMan1.JH594629             I 6 C 0
s dasNov3.JH567436               1040363 138 -   2788317 ------TACAGGTCCCA-C-CT-------------------------TGCAGCTCGACCTC-----AGGGAACTGCCAGGCTG--CC--CTCTTCGACTCAGGCAATGAGTAATTCTGCTTTGCCAAATGATTCTCCCCAAGGGCATCTGTCTAAGAAGCCTGAACCTAGACAGGATTCT
i dasNov3.JH567436             I 5 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e ornAna1.Contig53964                668   0 -      2070 I
e tetNig2.chr10                  6379385   0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382   0 -   6649201 I
e hapBur1.JH425491                252157   0 -   1273513 I
e neoBri1.JH422308               3491820   0 -   5414369 I
e araMac1.AOUJ01470298               637   0 -       895 I
e takFla1.AOOT01113665               306   0 +       323 I
e fr3.HE591725                    289786   0 -    411779 I
e ficAlb2.chr2                 148476508   0 + 157563209 I
e anoCar2.chr1                 148577473   4 + 263920458 I
e pseHum1.KB221220               3809684   0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214   0 -  25666195 I
e allMis1.JH737491                498705 1755 -    628740 I
e falPer1.KB390952               2753956   0 -  18327016 I
e falChe1.KB397350               1707310   0 -   3649919 I
e macEug2.GL109592                105897   0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802   0 +   2102797 I
e sarHar1.chr1_GL834688_random    533615 5587 +   3395230 I
e melGal1.chr7                  34310641   0 -  38723565 I
e anaPla1.KB742696               1254472   0 -   1270250 I
e amaVit1.AOCU01222764              1324   0 -      1397 I
e apaSpi1.KB929605                579960   0 +   1015623 I
e cheMyd1.KB605988                134509   0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736   1 +    779542 I
e pelSin1.JH207189               1424965   0 +   1874153 I
e melUnd1.JH556573                751858   2 +  10614383 I
e monDom5.chr1                 530538996 3149 + 748055161 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e pteAle1.KB030580              19418878  25 -  23789964 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=19209.000000
s hg38.chr8_KI270814v1_alt         88890 5 +    141812 TGCAT
s ponAbe2.chr8                  59058413 5 + 153482349 TACAT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48137087 5 + 100215132 TATAT
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99350132 5 + 108792865 TACAT
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24016758 5 +  27210278 TACAT
i saiBol1.JH378126             I 314 C 0
s otoGar3.GL873541              21196330 5 -  23169006 CCTGC
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19219010 5 -  22931326 CGCAT
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2812958 5 -   6207710 CGCAT
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10848738 5 +  17242564 TGTAT
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84043010 5 +  91571448 CACAT
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6823915 5 -  14545593 CACAT
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134114367 5 + 140925898 CCTAT
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57847231 5 -  64289059 CTTAT
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13619289 5 -  19722643 CTTAT
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3042023 1 +   4816872 C----
i odoRosDiv1.KB229025          C 0 C 0
s loxAfr3.scaffold_20           27628654 5 -  46401353 CACAT
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9975363 5 +  24341844 CACAT
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1040501 5 -   2788317 CACAT
i dasNov3.JH567436             C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e ornAna1.Contig53964                668 0 -      2070 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221220               3809684 0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH737491                498705 1755 -    628740 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e sarHar1.chr1_GL834688_random    533615 5587 +   3395230 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929605                579960 0 +   1015623 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736 1 +    779542 I
e pelSin1.JH207189               1424965 0 +   1874153 I
e melUnd1.JH556573                751858 2 +  10614383 I
e monDom5.chr1                 530538996 3149 + 748055161 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e pteAle1.KB030580              19418878 25 -  23789964 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=84993.000000
s hg38.chr8_KI270814v1_alt         88895 12 +    141812 CATAG----CTATTTT
s ponAbe2.chr8                  59058418 12 + 153482349 CATAG----CTATTTC
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48137092 12 + 100215132 CATAG----CTATTTT
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99350137 12 + 108792865 CACAG----CTATTTT
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24016763 12 +  27210278 CATAG----CTATTTT
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21196335 12 -  23169006 CACAG----CTACTTT
i otoGar3.GL873541             C 0 I 13
s vicPac2.KB632437              19219015 16 -  22931326 CACAGGGCTCCGTTTT
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2812963 16 -   6207710 CATAGGGCTCTGTCTT
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10848743 16 +  17242564 CAGAGTGCTCTATTTT
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84043015 16 +  91571448 CATAGCTCTCTATTTT
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6823920 16 -  14545593 CACAGCTCTCTATTTT
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134114372 12 + 140925898 CGTAG----CTATGTT
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57847236 12 -  64289059 CACAG----CTATTTT
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13619294 12 -  19722643 CAGAG----CTATTTT
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3042024  7 +   4816872 ---AG------ATTTT
i odoRosDiv1.KB229025          C 0 C 0
s loxAfr3.scaffold_20           27628659 16 -  46401353 CATAGCTCTCTATTTT
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9975368 14 +  24341844 CATAG--CTCTGTTTT
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1040506 16 -   2788317 CGTAGCTCTCTATTTT
i dasNov3.JH567436             C 0 C 0
s xenTro7.KB021649             194338658 12 + 215906545 cagat----ttagttt
i xenTro7.KB021649             N 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e ornAna1.Contig53964                668  0 -      2070 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221220               3809684  0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH737491                498705 1755 -    628740 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e sarHar1.chr1_GL834688_random    533615 5587 +   3395230 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530538996 3149 + 748055161 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e pteAle1.KB030580              19418878 25 -  23789964 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=62729.000000
s hg38.chr8_KI270814v1_alt         88907 9 +    141812 TCGGGAGCA
s ponAbe2.chr8                  59058430 9 + 153482349 TCAGGAGCA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48137104 9 + 100215132 TCAGGAGCA
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99350149 9 + 108792865 TAAGGAGCA
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24016775 9 +  27210278 TAAGGAGCA
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19219031 9 -  22931326 TAAGGAACA
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2812979 9 -   6207710 TAAGGAACA
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10848759 9 +  17242564 TAAGGAGCA
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84043031 9 +  91571448 TAAGGAGCA
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6823936 9 -  14545593 TAAGAAGCA
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134114384 9 + 140925898 TAAGAAGCA
i felCat8.chrA3                C 0 I 478
s canFam3.chr17                 57847248 9 -  64289059 TAAGAAGCA
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13619306 9 -  19722643 TAAGAAGCA
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3042031 9 +   4816872 TAAGAAGCA
i odoRosDiv1.KB229025          C 0 C 0
s loxAfr3.scaffold_20           27628675 9 -  46401353 TACAAAGAA
i loxAfr3.scaffold_20          C 0 I 5
s triMan1.JH594629               9975382 9 +  24341844 TTAAAAAAA
i triMan1.JH594629             C 0 I 5
s dasNov3.JH567436               1040522 9 -   2788317 TAAAGAGTA
i dasNov3.JH567436             C 0 I 6
s xenTro7.KB021649             194338670 7 + 215906545 ttgaaat--
i xenTro7.KB021649             C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e ornAna1.Contig53964                668 0 -      2070 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221220               3809684 0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH737491                498705 1755 -    628740 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e sarHar1.chr1_GL834688_random    533615 5587 +   3395230 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929605                579960 0 +   1015623 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736 1 +    779542 I
e pelSin1.JH207189               1424965 0 +   1874153 I
e melUnd1.JH556573                751858 2 +  10614383 I
e monDom5.chr1                 530538996 3149 + 748055161 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e pteAle1.KB030580              19418878 25 -  23789964 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21196347 13 -  23169006 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=12909.000000
s hg38.chr8_KI270814v1_alt         88916 3 +    141812 GGC
s ponAbe2.chr8                  59058439 3 + 153482349 GGC
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48137113 3 + 100215132 GGC
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99350158 3 + 108792865 GCC
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24016784 3 +  27210278 GTC
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19219040 2 -  22931326 -GC
i vicPac2.KB632437             C 0 I 22
s camFer1.KB017763               2812988 2 -   6207710 -GC
i camFer1.KB017763             C 0 I 22
s orcOrc1.KB316907              10848768 2 +  17242564 -GC
i orcOrc1.KB316907             C 0 I 24
s equCab2.chr15                 84043040 2 +  91571448 -GC
i equCab2.chr15                C 0 I 25
s cerSim1.JH767782               6823945 2 -  14545593 -GC
i cerSim1.JH767782             C 0 I 25
s canFam3.chr17                 57847257 2 -  64289059 -GC
i canFam3.chr17                C 0 I 24
s musFur1.GL896914              13619315 2 -  19722643 -GC
i musFur1.GL896914             C 0 I 21
s odoRosDiv1.KB229025            3042040 2 +   4816872 -GC
i odoRosDiv1.KB229025          C 0 I 24
s loxAfr3.scaffold_20           27628689 3 -  46401353 GGA
i loxAfr3.scaffold_20          I 5 I 17
s triMan1.JH594629               9975396 3 +  24341844 GGA
i triMan1.JH594629             I 5 I 17
s dasNov3.JH567436               1040537 3 -   2788317 GGA
i dasNov3.JH567436             I 6 I 17
s xenTro7.KB021649             194338677 3 + 215906545 ggc
i xenTro7.KB021649             C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e felCat8.chrA3                134114393 478 + 140925898 I
e ornAna1.Contig53964                668 0 -      2070 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221220               3809684 0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH737491                498705 1755 -    628740 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e sarHar1.chr1_GL834688_random    533615 5587 +   3395230 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929605                579960 0 +   1015623 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736 1 +    779542 I
e pelSin1.JH207189               1424965 0 +   1874153 I
e melUnd1.JH556573                751858 2 +  10614383 I
e monDom5.chr1                 530538996 3149 + 748055161 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e pteAle1.KB030580              19418878 25 -  23789964 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21196347 13 -  23169006 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=1069283.000000
s hg38.chr8_KI270814v1_alt         88919 182 +    141812 AGAA-GTCACTGGGCAGAACCTTTC--AAGCTGCAGGGCTCACAGTTGTAGAAAA-AATAGGTCTTTTCA--GGGCTTGCCTCCA---AAACCCTTAACA-----GAGTTCAAT-TTGCTTCAAGGA-TAATCAGCTTTTTCTG--A--AAAAAC--ATTTTTTCGGTGTATAATATAAAACATGACCAAAGGATCTTA------------CTGTA
s ponAbe2.chr8                  59058442 181 + 153482349 AGAA-ATCACTGGGCAGAATCTTTC--AAGCTCCA-GGCTCACAGTTCTAGAAAA-AATAGGTCTTCTCA--GGGCTTGCCTCCA---AAACCCTTAACA-----GAGTTCAAT-TTGCTTCAAGGA-TAATCAGCTTTTTCTG--A--AAAAAC--ATTTTTTCAGTATATAATATAAAACATGACCAAAGGATCTTA------------CTGTA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48137116 181 + 100215132 AGAA-GTCACTGGGCAGAATCTTTC--AAGCTCCA-GGCTCACAGTTCTAGAAAA-AGTAGGTCTTCTCA--GGGCTTGCCTCCA---AAACCCTTAACA-----GAGTTCAAG-TTGCTTCAAGGA-TAATCAGCTTTTTCTG--A--AAAAAC--TTTTTTTCAGTATATAATATAAAACATGACCAAAGGATCTTA------------CTATA
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99350161 194 + 108792865 AAAG-GTCATTGAAAAGAACCTTTC--CAACTCTA-GCCTC-CAGGTCTAGAAAAGAACAAGTCTTCCCA--GGGCTCACCTCCA---AAACCCTTAATA-----GAGTCCAAC-CT-CTTTGAGGA-TAATCAGCTTTTCCTT--T--AAAAACCAATTTTGTCACCATGCAATATAAAACATGGCCAAAGATTCTCACCTAAGGTTTGCCTGCA
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24016787 192 +  27210278 AAAG-GTCACTGAAAAGAACCTTTC--CAGCTCTA-GCCTCACAGGTCTAGAAAAGAACAAGTCTTCCCA--GGGCTCACCTCCA---AAACCCTTAATA-----GAGTCCAAC-CT-CTTCGAGGA-TAATCAGCTTTGCCCT--T--AAAAACCAATTTTGTCACCATGTAATATAAAACATGGCCAAAGATTTTCACCT---GTTTGCCTGCA
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19219064 174 -  22931326 AAAA-GTCGCTGGGCAGAA---TCC--TAGCTCCA-GGCTCGCGAGTCTGGAGAAGAACAGGTCTTCCCA--GGGCTCTCCTCAA---AAGCTCTTAACA-----GTGTCCAAC-TCTCTCTGGGGA-----CAGCTTTTCCTC--A--AAAGACCA---------------CATATAAAGCATGGCCAAAGAGCCTTACCTCAAATGTGCCCGTG
i vicPac2.KB632437             I 22 C 0
s camFer1.KB017763               2813012 174 -   6207710 AAAA-GTCGCTGGGCAGAA---TCC--TAGCTCCA-GGCTCGCGAGTCTGGAAAAGAACAGGTCTTCCCA--GGGCTCTCCTCAA---AAGCTCTTAACA-----GTGTCCAAC-TCTCTCTGGGGA-----CAGCTTTTCCTT--A--AAAGACCA---------------CATATAAAGCATGGCCAAAGAGCCTTACCTGAAACGTACCAGTG
i camFer1.KB017763             I 22 C 0
s orcOrc1.KB316907              10848794 180 +  17242564 AAAG-GTTGCTGGGCAGAATCTTCC--CAGCTCTA-GGCTCAGGAGTCTAGAAAAGACCAGGTCTTCCCA--GGGCTCTCCTCAA---AAACCCTTAATA-----GTGTCCAAC-CCTCTGTGGGGA-TAGTCAGCTTTTCCT---A--AAAGACCA---------------TATATAAAACATGGCTGAAGAGCCTTACCTGAAATACACCTGTG
i orcOrc1.KB316907             I 24 C 0
s equCab2.chr15                 84043067 190 +  91571448 AAAT-GTCCCTGGGTAGACTCTTCT--TGGCTCTA-GGCTCCTGAATCTAGAAAAGAACAGGTGTCCTCA--GGGTTGTCCCCCA---AAACCCTTAATA-----GAGCCTAAC-TCTCTTTGCAGA-TTATCAGCTTTTCCTT--A--AAAGACCAATTTAT------CGCTATATAAAATATGGCCAAAGAATCTTTCCTGAAACTTATTTGTG
i equCab2.chr15                I 25 C 0
s cerSim1.JH767782               6823972 179 -  14545593 AAAT-GTCCCTGGGCAGACTCTTCC--TGGCTCCA-GGCTCGTGAATCTAGAAAAGAACAGGTCTTCCTA--GGGCTGGCCTCCA---AAACCCTTAATA-----GAGTCCAA---CTCTTTGGGGA-TAATTGGCTTTTCCTT--A--AAAGAGCATGTT-------------TATAAAACATGGCCAAAGAGTCTGACCTGAAACTTATT--TG
i cerSim1.JH767782             I 25 C 0
s felCat8.chrA3                134114871 188 + 140925898 AAAA-GTCCCTGGGCAGA--CTTCC--TACCTCTG-GGCTGATGAATCCAGAAAAGAACAGGTCTTCCCA--GGGCTCTCCTCCA---AAATCCTTAATA-----GAGTCCAAC-TCTCTTTGGGGA-TAGTTAGCTTGTCCTT--A--AAGGATCAATGTAT------CACTATATAAAACATGGCCAAATAGTCTTACCTGAGATTTACCTGTG
i felCat8.chrA3                I 478 C 0
s canFam3.chr17                 57847283 187 -  64289059 GGAA-GTCACTGGGCAGA--CTTCC--TACCTCCA-GGCCTGTGAATCTAGTAAGT-CCAGGTGTTCCCA--AGGCTCCCCTCCA---AAATCCTTAATA-----GAGCCCAAC-TCTCTTTGGGGA-TAATAAGGTTGTCTCT--A--AAAGGCCAATGTAT------TGCTATATAAAACATGGCTAAGGAATCTCATCTGAGACTGATCTGTG
i canFam3.chr17                I 24 C 0
s musFur1.GL896914              13619338 187 -  19722643 GAAA-GTCACTGGGCAGA--CTTCC--TACCTCCA-GGCCTATGAATCTAGAAAAGAACAGGTCTTCCCA--GGGCTTCCCTCCA---AAATCCTTAACA-----GGGTCCAAT-TCTCTTTGGGGA-TAATCAGCTTGTCCTT--A--AGAGGCCAATGTAT------CCCTATATAAACCACAGCTAAAGAATCTCA-CTGAGATCTACCTGTG
i musFur1.GL896914             I 21 C 0
s odoRosDiv1.KB229025            3042066 185 +   4816872 GAAA-GTTGCTGGGCAAA--CTTCC--TACCTCCA-GGCC--TGAATCTAGAAAACAATAGGTCTTCCCA--GGGCTCCCCTCCA---AAATCCTTAATA-----GAGTCCAAT-TCTCTTTGGGGA-TAATCAGCTTGTCCTT--A--AAAGGCCAATGTAT------CGCTATATAAAACATGGCCAAAGAATCTCA-CTGAGACTTATCTGTG
i odoRosDiv1.KB229025          I 24 C 0
s loxAfr3.scaffold_20           27628709 192 -  46401353 AATA-ATCACTGGGCAGGCTCGTCC--TAGCACCA-GCCTCATGAATTTAGAGAAGAATAAGCTTCCCTA--GGGCTTTCCTCCA---AAACCCTTAATA-----AAGTCCAAC-TGTCCATGGGGTATAATTAGCTTTTCCTT-GA--AAAGACCAACTTCT------TACTACATAAAACACGGTCAAAGAATTTTACCTAAAATATATCTGTG
i loxAfr3.scaffold_20          I 17 C 0
s triMan1.JH594629               9975416 190 +  24341844 AAAG-ATCACTGGGCAGACT--TCT--TACATCCA-GCCTCACGAATTTAGAGAAGAATAAGCTTCCCTA--GGGCTCTCCTCCA---AAACCCTTAATA-----AAGTCCAAC-TATCTTTGGGGGATAATTAGCTTTTCCTT-GA--AAAGACCAATTTAT------TACTATATAAAACATGGCCAAAGAATTTTACCTAAAATTTACCTGTA
i triMan1.JH594629             I 17 C 0
s dasNov3.JH567436               1040557 188 -   2788317 AAAATGTCACTGGGCACAATCTTCG--TCGCTCCA-ACTTGATGAATCTGGAACACAA-GAGTCTTCCTA--GGGCTTTCCTCCA---AAACCCTTAAGA-----GAATCCAAC-TCTCTTTGGTGA-----TAGATTTTCCTTAAA--AAAGACTAATTTAT------CACTAAATGAAACATGGCCAGAGAATCATACCTGAAGCTTAACTGTG
i dasNov3.JH567436             I 17 C 0
s xenTro7.KB021649             194338680 187 + 215906545 aggt-tttattaaataggatctttccatagcacca-ataaagtatatttttcatgaaaaagctgtttatATGTGGTTTATTTTTATAGAGACCTGCAATATTTATGAATATAGCTTCCCTTTAAAGG-TAATTAACTTTTTCTG--ATCACACATGAATTTTT---------TAGACAAAATTTGCCTAAA---TTTCA------------GTGTA
i xenTro7.KB021649             C 0 N 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e ornAna1.Contig53964                668   0 -      2070 I
e tetNig2.chr10                  6379385   0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382   0 -   6649201 I
e hapBur1.JH425491                252157   0 -   1273513 I
e neoBri1.JH422308               3491820   0 -   5414369 I
e araMac1.AOUJ01470298               637   0 -       895 I
e takFla1.AOOT01113665               306   0 +       323 I
e fr3.HE591725                    289786   0 -    411779 I
e ficAlb2.chr2                 148476508   0 + 157563209 I
e anoCar2.chr1                 148577473   4 + 263920458 I
e pseHum1.KB221220               3809684   0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214   0 -  25666195 I
e allMis1.JH737491                498705 1755 -    628740 I
e falPer1.KB390952               2753956   0 -  18327016 I
e falChe1.KB397350               1707310   0 -   3649919 I
e macEug2.GL109592                105897   0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802   0 +   2102797 I
e sarHar1.chr1_GL834688_random    533615 5587 +   3395230 I
e melGal1.chr7                  34310641   0 -  38723565 I
e anaPla1.KB742696               1254472   0 -   1270250 I
e amaVit1.AOCU01222764              1324   0 -      1397 I
e apaSpi1.KB929605                579960   0 +   1015623 I
e cheMyd1.KB605988                134509   0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736   1 +    779542 I
e pelSin1.JH207189               1424965   0 +   1874153 I
e melUnd1.JH556573                751858   2 +  10614383 I
e monDom5.chr1                 530538996 3149 + 748055161 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e pteAle1.KB030580              19418878  25 -  23789964 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21196347  13 -  23169006 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=263343.000000
s hg38.chr8_KI270814v1_alt         89101 48 +    141812 CCATGCCA-TTTATTTGAATATGCCC-----CATTTATGAG---GAACTT-GAGAGGT
s ponAbe2.chr8                  59058623 48 + 153482349 TCATGCCA-TTTATTTGAATATGCCC-----AATTTATGAG---GAACTT-GAGAGGT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48137297 48 + 100215132 TCATGCCA-TTTACTTGAATATGCCC-----AATTTATGAG---GAACTT-GAGAGGT
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99350355 47 + 108792865 TCATGTCA-CTTATTTGAATATGCCC------ATAAATTGG---AAACTT-GAGCGGT
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24016979 47 +  27210278 TCACGTCA-CTTACTTGAATATGCCC------ATAAATTGG---AAACTT-GAGAGGT
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19219238 48 -  22931326 TCACTTACGTTTATTTTAAAATGCCT-----AATTCATGAG---AAACTT-GAGAAA-
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2813186 48 -   6207710 TCACTTAAGTTTATTTTAAAATGCCT-----AATTCATGAG---AAACTT-GAGAAA-
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10848974 47 +  17242564 TCG-TTAAGTTTATTTTAATATGCCT-----AATTTATGAG---AAACCA-GAGACA-
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84043257 48 +  91571448 TCATGTAAGTTCATTTTAATATGCCT-----AATTTATGAG---AAACTT--AGAGGT
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6824151 49 -  14545593 TCATTTAAGTTTATTTTAATATGCCT-----AATTTATGAG---AAACCT-AAGAGGT
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134115059 49 + 140925898 TCACGTAAGTTTATTTTAATCTGCCT-----CATTCATGAG---AAACTG-GAGAGGT
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57847470 49 -  64289059 TCATGTAAGTTTATTTTCATCTACTT-----TGTTCATGAG---AAGCCT-GAGAAGC
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13619525 49 -  19722643 TCACAGAAGTTTATTTTAATCTGCCT-----CGTTCATGAG---AAACCT-CAGAGGC
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3042251 47 +   4816872 TCATGTAAGTTTATTTTAATCTGCCT-----CATTCATGAG---AAGCCT---GAGGC
i odoRosDiv1.KB229025          C 0 C 0
s loxAfr3.scaffold_20           27628901 52 -  46401353 CCATGAAA--TTAATTTAATGTGCTCAAATACATTTATGAG---AAACTT-AAGTGGT
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9975606 49 +  24341844 CCGTGAAA-CTTATTTTAATATGCTC-----TATTTATGGG---AAACTTAAAGAGGT
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1040745 51 -   2788317 TCACGCAG-TTTATTTTAATATGCCC-----TATTTATGAGAAAAAACTT-AAGAGGT
i dasNov3.JH567436             C 0 I 299
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e ornAna1.Contig53964                668  0 -      2070 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221220               3809684  0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH737491                498705 1755 -    628740 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e sarHar1.chr1_GL834688_random    533615 5587 +   3395230 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530538996 3149 + 748055161 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e pteAle1.KB030580              19418878 25 -  23789964 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21196347 13 -  23169006 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=31901.000000
s hg38.chr8_KI270814v1_alt         89149 20 +    141812 -----AGAAAAGATGATGCTTTGAA
s ponAbe2.chr8                  59058671 20 + 153482349 -----AGAAAAGATGATGCTTTGAA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48137345 20 + 100215132 -----AGAAAATATGATGCTTTGAA
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99350402 15 + 108792865 -----AGAAGAG-----GTTTTGAG
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24017026 15 +  27210278 -----AGAAGAG-----GCTTTGAG
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19219286 13 -  22931326 -----AGACAAC-----AC--TGAG
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2813234 13 -   6207710 -----AGACAAC-----AC--TGAG
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10849021 10 +  17242564 -----G---AAT-----GC--CAGG
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84043305 17 +  91571448 -----AGAAAAGAC---ACTTTGAG
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6824200 18 -  14545593 -----AGAAAAGATA--ACACTGAG
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134115108 15 + 140925898 -----AGATAAT-----ACTTTGAG
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57847519 15 -  64289059 -----AGACAAC-----ACTTTGAG
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13619574 15 -  19722643 -----AGATGAC-----ACTTTCAG
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3042298 15 +   4816872 -----AGACAAC-----ACTTTGAG
i odoRosDiv1.KB229025          C 0 C 0
s loxAfr3.scaffold_20           27628953 20 -  46401353 AGAAAAGACAAC-----ACATTGAG
i loxAfr3.scaffold_20          C 0 I 9
s triMan1.JH594629               9975655 20 +  24341844 AGAAAAGACAAC-----ACATTGAG
i triMan1.JH594629             C 0 I 8
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e ornAna1.Contig53964                668  0 -      2070 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221220               3809684  0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH737491                498705 1755 -    628740 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e sarHar1.chr1_GL834688_random    533615 5587 +   3395230 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530538996 3149 + 748055161 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e dasNov3.JH567436               1040796 299 -   2788317 I
e pteAle1.KB030580              19418878 25 -  23789964 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21196347 13 -  23169006 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=16800.000000
s hg38.chr8_KI270814v1_alt         89169 2 +    141812 AT
s ponAbe2.chr8                  59058691 2 + 153482349 AT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48137365 2 + 100215132 AT
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99350417 2 + 108792865 AT
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24017041 2 +  27210278 AT
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19219299 2 -  22931326 AC
i vicPac2.KB632437             C 0 I 14
s camFer1.KB017763               2813247 2 -   6207710 AT
i camFer1.KB017763             C 0 I 14
s orcOrc1.KB316907              10849031 2 +  17242564 AT
i orcOrc1.KB316907             C 0 I 13
s equCab2.chr15                 84043322 2 +  91571448 AT
i equCab2.chr15                C 0 I 11
s cerSim1.JH767782               6824218 2 -  14545593 AT
i cerSim1.JH767782             C 0 I 11
s felCat8.chrA3                134115123 2 + 140925898 AT
i felCat8.chrA3                C 0 I 465
s canFam3.chr17                 57847534 2 -  64289059 AT
i canFam3.chr17                C 0 I 16
s musFur1.GL896914              13619589 2 -  19722643 AT
i musFur1.GL896914             C 0 I 16
s odoRosDiv1.KB229025            3042313 2 +   4816872 AT
i odoRosDiv1.KB229025          C 0 I 16
s loxAfr3.scaffold_20           27628982 2 -  46401353 TT
i loxAfr3.scaffold_20          I 9 C 0
s dasNov3.JH567436               1041095 2 -   2788317 AT
i dasNov3.JH567436             I 299 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e ornAna1.Contig53964                668 0 -      2070 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221220               3809684 0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH737491                498705 1755 -    628740 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e sarHar1.chr1_GL834688_random    533615 5587 +   3395230 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929605                579960 0 +   1015623 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736 1 +    779542 I
e pelSin1.JH207189               1424965 0 +   1874153 I
e melUnd1.JH556573                751858 2 +  10614383 I
e monDom5.chr1                 530538996 3149 + 748055161 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e triMan1.JH594629               9975675 8 +  24341844 I
e pteAle1.KB030580              19418878 25 -  23789964 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21196347 13 -  23169006 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-657.000000
s hg38.chr8_KI270814v1_alt         89171 1 +    141812 A
s ponAbe2.chr8                  59058693 1 + 153482349 T
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48137367 1 + 100215132 T
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99350419 1 + 108792865 A
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24017043 1 +  27210278 A
i saiBol1.JH378126             C 0 C 0
s loxAfr3.scaffold_20           27628984 1 -  46401353 T
i loxAfr3.scaffold_20          C 0 C 0
s dasNov3.JH567436               1041097 1 -   2788317 A
i dasNov3.JH567436             C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e musFur1.GL896914              13619591 16 -  19722643 I
e vicPac2.KB632437              19219301 14 -  22931326 I
e camFer1.KB017763               2813249 14 -   6207710 I
e odoRosDiv1.KB229025            3042315 16 +   4816872 I
e canFam3.chr17                 57847536 16 -  64289059 I
e felCat8.chrA3                134115125 465 + 140925898 I
e ornAna1.Contig53964                668 0 -      2070 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221220               3809684 0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH737491                498705 1755 -    628740 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e sarHar1.chr1_GL834688_random    533615 5587 +   3395230 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929605                579960 0 +   1015623 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736 1 +    779542 I
e pelSin1.JH207189               1424965 0 +   1874153 I
e melUnd1.JH556573                751858 2 +  10614383 I
e monDom5.chr1                 530538996 3149 + 748055161 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e equCab2.chr15                 84043324 11 +  91571448 I
e triMan1.JH594629               9975675 8 +  24341844 I
e pteAle1.KB030580              19418878 25 -  23789964 I
e cerSim1.JH767782               6824220 11 -  14545593 I
e orcOrc1.KB316907              10849033 13 +  17242564 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21196347 13 -  23169006 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=692309.000000
s hg38.chr8_KI270814v1_alt         89172 197 +    141812 TT-----C-TTGTTGACTTCAG-CAATGCTGCCTGATCATAGAGTTAATTAGGAAAACTCAAAG---TTTCAAAGAAAA-CAATCCACCTCTTCACCTTCTGCAC--A-GGCCAG-GTGACAGCT---TGTCAAAGATTGGACAGT-------TGC---AGAAAGAC---------------------------TCGT-TTCAATTATGGCTA---TTCTTAGCAGATGTTTCAATATGAA-CAATGATATG--CAAGT
s ponAbe2.chr8                  59058694 197 + 153482349 CT-----C-TTGTTGACTTGAG-CAATGCTGCCTGATTATAGAGTTAATTAGGAAAACTCAAAG---TTGCAAAGAAAG-CAATACACCTCTTCACCTTCTGCAC--A-GGCCAG-GTGACAGCT---TGTCAAATATTGGACAGT-------TGC---AGAAAGAC---------------------------TCAT-TTCAATTATGGGTA---TTCTTAGCAGATGTTTCAGTATTAA-CAATAATATG--CAAGT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48137368 197 + 100215132 TT-----C-TCGTCGACTTGAG-CAATGCTGCCTGATCATAGAGTTAATTAGGAAAACTCAAAG---TTTCAAAGAAAG-CAATCCACCTCTTCACCTTCTGCAC--A-GGCCAG-GGGACAGCT---TGTCAAAGACTGGACAGT-------TGC---AGAAAGAC---------------------------TCGT-TTCACTTATGGGTA---TTCTTAGCAGATATTTCAGTATTAA-CAATGATATG--CAAGT
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99350420 201 + 108792865 GGTGGGAG-TTTTTAATTTCAGCCAATGCTGCT------CAGAGTTAAATACGAATAATCATGG---CTTCAAAGAAAG-CAAACCACATATTCCCTTTCTGCAC--A-GGCCAG-GCAAC---------GCTAAGTGTTGGCAGT-------TGT---AGAAAGACCT--------------CACCC--CTCATCGC-ATCAATTAAGGGCA---TTCTT-GCAAAGCCTGCAGCATTAA-CCAGGATATA--CAAGT
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24017044 174 +  27210278 TA-GAGAG-TTTTTAATTCCAGCCAATGCTGCT------CAGAGTTAAATACAAATAATCATGG---CTTCAAAGAA------------------------------G-GGCTGG-GCAAC---------CCTAAGTGTGGGCAGT-------TGT---AGAAAGACCT--------------CACCC--CTCGTTGT-ATTAATTAACGGCA---TTCTTAGCAAAGGCTGCAGCATTAA-CCAGGACATA--CAAGT
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19219315 211 -  22931326 TT-----C-TTTTTAACTTGAGCAAATGCTGCTCAATCACAGGGTTAAACAGGTTAAATAAAGA---CTTCAAAGAAGGGCAAACCACCTGTTCA-CACCAGCAC--A-GCCCTG-GCAGCACCTCCCTGTCAGAGGGCGGAGAGC-------TGC---AAAAGGACCT--------------GGGAC--CTCATTGC-TTTAATTAAGGGCA----TCTTAGCAGAGGCTTCAGCATTAG-CAAGGGTAAG--TACCC
i vicPac2.KB632437             I 14 C 0
s camFer1.KB017763               2813263 212 -   6207710 TT-----C-TTTTTAACTTGAGCAAATGCTGCTCAATCACAGGGTTAAACGGGTTAAATAAAGA---CTTCAAAAAAGGGCAAACCACCTGGTCA-CACCAGCAC--A-GCCCCA-GCAGCACCTCCTTGTCAGAGGGCGGAGAGC-------TGC---AAAAGGACCT--------------CGGAC--CTCATTGC-TTTAATTAAGGGCA---CTCTTAGCAGAGGCTTCAGCATTAG-CAAGGATAAG--TACCC
i camFer1.KB017763             I 14 C 0
s orcOrc1.KB316907              10849046 211 +  17242564 TT-----C-TTTTTAACTTGGGCAGATGCTGCTCAATCACAGAGTGAGA--GGTAAAATCAAGA---CCCCAAAGAAGGGCAAA-CACCTGCTCA-CGTGGGCAC--AGGCACTG-GCAGCACCTCTGTGCCAGGGGGCGGAGAGC-------TGC---AAAAAGACCT--------------CAGAC--CTCACGGC-TTCAATTAAGGGCG---TTCTTAGCGGAGGCTTCGGCATTAGCCAAGGATGTG--TACCT
i orcOrc1.KB316907             I 13 C 0
s equCab2.chr15                 84043335 211 +  91571448 TT-----C-TTTTTAACTTAAGCAAATGCTGCTCAATCCCAGAGTTAAACAGATAAAACCAAGG---CTTCAAAGAAAGACAAACCACCTGTTCA-ACCTTCCAT--A-GGGACA-GCAACACCTCCTTGTCAGAGGAGGGAGAGC-------CGC---AAGAAGACCT--------------CAGAC--CTCACTGC-TGCAGTTAAGGAGA---ATCTTAGCAGAGCTTTC-ACGTCAG-CAAGGACACG--CACAT
i equCab2.chr15                I 11 C 0
s cerSim1.JH767782               6824231 213 -  14545593 TT-----CTTTTTTAACTTGAGCAAATGCTGCTCAGTCACAGAGTTAAACAGATAAAACCAAGG---CTCCAAAGAAAGGCAAACCACCTGTTC--ATCTTCCAC--A-GCCACA-GTGACACCTCCCTGTCAGAGGAGGGAGAAG-------TGC---AAAAAGACCT--------------CAGAT--GTCATTGCTTTCAGTTAAGGACA---TTCTTAGCAGAGGTTTCGGCATTAG-CAAGGAGGTG--TACAT
i cerSim1.JH767782             I 11 C 0
s felCat8.chrA3                134115590 210 + 140925898 TT-----C-TTTGTAACATGAGCAAATGCTGCTCAATCACCGAGTTA-ACAAGTAGAATCGAGG---CTTCAAAGAAAGGCAAACCATGTGTCC--AGCTTTGGCACA-GGGCCA-G---CACCTCCCTGTC--GGGGTGGAGAGC-------TGC---AAAAAGACCT--------------CGGAC--CTCATTGC-TCCAATTAAGGGCATAGTTCTTAGTAGAGGTGTCCATATTAG-TAAGGATAAG--CACAT
i felCat8.chrA3                I 465 C 0
s canFam3.chr17                 57847552 198 -  64289059 TT-----C-TTTCTAACATGAGCAAATGCTGCCCAATCACAGAGTTACACAAGTAAAAGTGAGG---CTTCAAAGAAAGGCAAACCACAAGG---------------A-GGCCCA-G---CTCCTCCTTGTC--AGGGTGGAGGGT-------TGC--AAAAAAGACTT--------------CAGAC--CTCATTGC-TTCAGTTAAGGGCATAATTC-TCAGCGAGGTTTCAGTATTAC-TAAGGATGAG--TATGT
i canFam3.chr17                I 16 C 0
s musFur1.GL896914              13619607 198 -  19722643 TT-----C-TTTTTAACGTGAGCAAATGCTGCTCAATCACAGAGTCAAATAAGTAAAAGCAAGG---CTTCAAAGAAAGGCCAACCACAAGG---------------A-GGCCCA-G---CACCTCCTTGTC--GGGGTGGAAAGT-------TGC---AAAAAGACCT--------------CAGAC--CTCACTGA-TTCAAATAAGGGCACAATTCTTCACAGAGGTTTCAGTATTAC-TAAGCATAAG--TATGT
i musFur1.GL896914             I 16 C 0
s odoRosDiv1.KB229025            3042331 189 +   4816872 TT-----C-TTTTTAACGTGAGCAAATGCTGCTCAATCACAGAATTAAATAAGTAAAAGCAAGG---CTTCAAAGAATGACAAACCACAAGG---------------A-GGCCCA-G---CACCTCCTTGTC--AGGGTGCAGGGG-------TGC----AAAAGACCT--------------CAGAC--C---------TCAAATAAGGGCATAATTCTTCACAGAGGTTTCACTATTAC-TAAGCATAAG--TGTGT
i odoRosDiv1.KB229025          I 16 C 0
s loxAfr3.scaffold_20           27628985 208 -  46401353 TC-----T-TTTTTTCTTTAAGCAAATGCTGCTCGGT----------AATACAAAGAACAAACAGGAATTCAAAGAAAGGCAAACCACCTGTTTAGCTTCACCAC--A-GGCCACTGCAAAGTCTTTTTGTCAGAGGGCAGAGAGTT------TGA---AACAAGACTT--------------AGCAC--CTCATTTA-TTCGATTGAGGTTA---TTCTTAGCAAAGGTTCCAGCATAAG-CAAAGATACA--TAAGT
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9975683 203 +  24341844 -------A-GTTTTTCTTTAAGCAAATACTGCTCAGT----------AATACAAAAAACAAACAAG-ATCCAAAGAAAGGCAAACCACCTATTTAGCTTCAGCAC--A-GACTACTGCAACACCTTTTTGTTAGAGGGCAGAACGTT------TGA---AACAAGACTT--------------AGCACATTTCATTTA-TTCGATTGAGGGCA---TTCTTAGCAAAAGTTCTAGCAGCAG-CAAAGATATA------T
i triMan1.JH594629             I 8 C 0
s dasNov3.JH567436               1041098 230 -   2788317 TT-----T-TTTTTCCTTCAAGCAAATGCTGATCAATCTCAGAGTTAAATAGGAAAAACCAATG---CTTCAAAGAAAGGCAAATTACACTTTCATTTTCGGCAC--A-GGCCAC--------CTCCTTGTCAGTGGGTAGAAAGTCATTCTGTGACTGATCAGCACTTGCTCAAAGGAAAAAAGGAC--ATAATTTA-TTCAA-TAAGGGCA---TTCTTAGCAGATGGT-TAGCATAAG-CAAGAATAATGTTAAGT
i dasNov3.JH567436             C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e ornAna1.Contig53964                668   0 -      2070 I
e tetNig2.chr10                  6379385   0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382   0 -   6649201 I
e hapBur1.JH425491                252157   0 -   1273513 I
e neoBri1.JH422308               3491820   0 -   5414369 I
e araMac1.AOUJ01470298               637   0 -       895 I
e takFla1.AOOT01113665               306   0 +       323 I
e fr3.HE591725                    289786   0 -    411779 I
e ficAlb2.chr2                 148476508   0 + 157563209 I
e anoCar2.chr1                 148577473   4 + 263920458 I
e pseHum1.KB221220               3809684   0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214   0 -  25666195 I
e allMis1.JH737491                498705 1755 -    628740 I
e falPer1.KB390952               2753956   0 -  18327016 I
e falChe1.KB397350               1707310   0 -   3649919 I
e macEug2.GL109592                105897   0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802   0 +   2102797 I
e sarHar1.chr1_GL834688_random    533615 5587 +   3395230 I
e melGal1.chr7                  34310641   0 -  38723565 I
e anaPla1.KB742696               1254472   0 -   1270250 I
e amaVit1.AOCU01222764              1324   0 -      1397 I
e apaSpi1.KB929605                579960   0 +   1015623 I
e cheMyd1.KB605988                134509   0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736   1 +    779542 I
e pelSin1.JH207189               1424965   0 +   1874153 I
e melUnd1.JH556573                751858   2 +  10614383 I
e monDom5.chr1                 530538996 3149 + 748055161 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e pteAle1.KB030580              19418878  25 -  23789964 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21196347  13 -  23169006 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=648434.000000
s hg38.chr8_KI270814v1_alt         89369 176 +    141812 GTGAAACAGCCTTCTAG-TG--CTGAAAGCTTCCAGCTG---CCTCCAGGAACTGGAGTCCAAGGTCTAGGA---CGTGTGT--GAGGCAGTGTTGATGAGCAGGCACAAAAAGGTGAAAAGT-AGGCATTGGACctgtgatgtcccataggatagatgctaactacatgcacctct---tcatgcttaaa
s ponAbe2.chr8                  59058891 176 + 153482349 GTGAAACAGCCTTCTAG-TG--CTGAAAGCTTCCAGCTG---CCTCCAGGAACTGGAGTCCAAGACCTAGGA---TGTGTGT--GAGGCAGTGTTGATGAGCAGGCACTAAAAGGTGAAAAGT-AGGCATTGGACctgtgatgtcccataggatagatgctaactacatgcacctat---tcatgctcaaa
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48137565 166 + 100215132 GTGAAACAGCCTTCTAG-TG--CTGAAAGCTTCCAGCTG---CCTCCAGGAATGGGAGTCCAAGGCCTAGGA---CGTGTGT--GAGGCAGTGTTGATGTG------CTAAAAGGTGAAAAGT-AGGCATTGGACctgtgatgtcccataggatagatg----ctacatgcacttct---tcacgcttaaa
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99350621 165 + 108792865 GTGAAACAGCCTTCCAG-TG--CTGGAAGCTTCCAGCTA---CCTCCAGGAGCCTGAGCCCACGGCCTAGGA---CATGTGT--GCG-----------AAACAGGCATGAAAGAGTGGAACGC-GGGCTTTGGACctgtgatgtcccacagaacagacactaactgcatgcccccct---tcatgtttaaa
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24017218 165 +  27210278 GTGAAACAGCCTTCCAG-TG--TTGGAAGCTTCCAGCTA---CCTCTAGAAGCCTGAGCCCATGGCCTAGGA---CATGTGT--GCG-----------AAGCAGGCATGGAAGAGTGGAACAT-GGGCTTTGGACctgtgaggtcccacagaacagacactaactacatgcccctct---tcacgtttaaa
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21196360 156 -  23169006 GTGAAATGACCTTCAAG-TGCTCTGGAAGCTTCCAGTCGTCACCTGTGGAGGTGGAAGCCCAAGTCCTAGGA---CCCGAGT--GTG-------------------------GAGTAGGACGTGAGGCTCTGAGCctgtgctggccccttaggcagacactagctatgtgtgcctg----tcacatgtaaa
i otoGar3.GL873541             I 13 C 0
s vicPac2.KB632437              19219526 167 -  22931326 AGGAAACAGCCGTCACC-TG--CCAGAAGCTTCA--------TCTCCAGCAGCTGGAGCCTGGGACCCAGGAGTGTGCGTGG--GTGGCTTTG--------CAGGGCTGCTATGGTAGCCGGTAAGGCTTTCCACCTGCGCGGCCCAGCGTGACAGATGCTAGCTACCTGTGCCCAC---TCAAGTTTAAA
i vicPac2.KB632437             C 0 M 377
s camFer1.KB017763               2813475 167 -   6207710 AGGAAACAGCTGTCACC-TG--CCGGAAGCTTTG--------TCTCCAGCAGCTGGAGCCTGGGACCCAGGAGTGTGCGTGG--GTGGTTTTG--------CAGGGCTGCTATGGTAGCCAGTAAGGCTTTCCACctgcacggtccagcgagacagatgctagctacctgtgcccac---tcaagtttaaa
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10849257 174 +  17242564 GGGAAACAGCCAGCACC-TG---CGGAAGCTTCGAGTCT---TCTCCAGGAGCTGGAGCCTGAGACCCAGGATTGTGCGTGTGCGTGGCACCGC-------CGGGGGTGTTATAGCAGCAGGTAAGGCTTTACGCctgtgcagtccagtatgacagacactagatacatgtgcccat---tcagatgtaaa
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84043546 171 +  91571448 ACGAAACAGCCATCACC-AG--CTGGGAGCTTCAAGTCA---CCTCCAAGAGCTGGAGCCTAAGACCCAGGAGG--GTCTGG--CTGGTGTTGC-------TAGGGGTGATATAGTAGCAGGTAAGGCATTACACctgtgctgtccaatatgacagacactagctacaagtgcccat---tcaaatttaaa
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6824444 173 -  14545593 ATGAAAGAGCCATCACC-TG--TCAGAACCTTCAAGTCA---TCTCCAGGAGCTACAGCCTAAGACCCAGGAGGGTGTGTGG--GTGGTGTTGC-------CAAGGGTGTTACAGTAGCAGGTAAGGCCTTACACctgtgctgtccaatatgacagacaatagccacatacgctcat---tcaaatttaaa
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134115800 156 + 140925898 ATGAAACTCCCATCACC-TA--CTGGAAGCTTCACGTTA---TTTCCAGGAGCCAGAGCCTAAGACCCAGGAGGGTACGTGG--GTGGTGTTGC-------TAGG-GTGTTAGAGTAGCAGGGAAGCCTATACACCCGTggtagcca------------ccagctatgtgcacccac---tctcact----
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57847750 171 -  64289059 AAGAAACAGTCATCACC-TG--CTGGAAGCTTCAAGTTA---TTTCCAGGAGCCAGAGCCTAAGGCCCAGTAGGGCGTGTGG-------GTTGC-------TAAGTGTGTTATAGTAGCAGGTAAGGCTATACACctgtgctgtccaatgtgttaggttctagctacacgtatatactcatcacattgaaa
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13619805 173 -  19722643 ACGGAACAGTCACCACC-TG--TTGGAAACCTCCAGTTC---TCTCCAGGAGCCAGAGCCTAAGACCCAGGAGAACGTGTGG--GTGGTGTTGC-------TAGATGTGTTGGGGTAGCAGGTACAGCTATACACctgtgctgtccagcatgctaggtgccagctacacatacccgc---tcacatttaaa
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3042520 173 +   4816872 ATGAAACAGTCAGCACC-TG--CAGGAAACTTCAAGTTC---TTTCCGGGCGCCAGAGCCTAAGACCGAGGAGGGCCTGTGG--ATGGTGCTGC-------TAGGCGCGTTATAGTAGCAGGAAAGGCCGTACACctgtgctgtccaatgtgctaggcactagctacacacactcac---tcacatttaaa
i odoRosDiv1.KB229025          C 0 C 0
s loxAfr3.scaffold_20           27629193 152 -  46401353 AAGAAACAGTCATCACAGTG--CTGGAA--------------ACTTCAAGAGCTAGAGTCTAAGACCTAAGA---TGTAAAT--GTG---------------AACAATGCTATAGTAGGTGGTAAGGCTTTAGACCAgtgctgtccaatatgacaggcactagctaactgtgactat---ttaaattaaaa
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9975886 152 +  24341844 AAGAAACAGCCATCACAGTG--CTGGAA--------------GCTTCAAGGGCTAGAGCCAAAGACCTAAGG---TATGTAT--GTG---------------AGCAATATTATGGTAGGTGATCAGGCTTTAGAGctgtgctgtccaatatgatagaaatgagctaattgtgactat---ttaaattaaaa
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1041328 105 -   2788317 ATGAAACAGCCATCACA---------------------------------AGCCAG-------------------------------------------------AATGTCCTAATAGGAAGTAAGTATTTAAATCTATCctgtccaacatgatagagagtagctca-tgtgactat---ttaagttcaaa
i dasNov3.JH567436             C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e ornAna1.Contig53964                668   0 -      2070 I
e tetNig2.chr10                  6379385   0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382   0 -   6649201 I
e hapBur1.JH425491                252157   0 -   1273513 I
e neoBri1.JH422308               3491820   0 -   5414369 I
e araMac1.AOUJ01470298               637   0 -       895 I
e takFla1.AOOT01113665               306   0 +       323 I
e fr3.HE591725                    289786   0 -    411779 I
e ficAlb2.chr2                 148476508   0 + 157563209 I
e anoCar2.chr1                 148577473   4 + 263920458 I
e pseHum1.KB221220               3809684   0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214   0 -  25666195 I
e allMis1.JH737491                498705 1755 -    628740 I
e falPer1.KB390952               2753956   0 -  18327016 I
e falChe1.KB397350               1707310   0 -   3649919 I
e macEug2.GL109592                105897   0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802   0 +   2102797 I
e sarHar1.chr1_GL834688_random    533615 5587 +   3395230 I
e melGal1.chr7                  34310641   0 -  38723565 I
e anaPla1.KB742696               1254472   0 -   1270250 I
e amaVit1.AOCU01222764              1324   0 -      1397 I
e apaSpi1.KB929605                579960   0 +   1015623 I
e cheMyd1.KB605988                134509   0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736   1 +    779542 I
e pelSin1.JH207189               1424965   0 +   1874153 I
e melUnd1.JH556573                751858   2 +  10614383 I
e monDom5.chr1                 530538996 3149 + 748055161 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e pteAle1.KB030580              19418878  25 -  23789964 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=181861.000000
s hg38.chr8_KI270814v1_alt         89545 37 +    141812 tggatt-aaactttaataaagttaaaacctgagttcct
s ponAbe2.chr8                  59059067 37 + 153482349 tggatt-aaactttaataaagttaaaaactgagttctt
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48137731 37 + 100215132 tggatt-aaactttaataaagttaaaaactgagttcct
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99350786 33 + 108792865 ttgatt-aaact----taaagttaaaaattgagttcct
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24017383 31 +  27210278 ttgatt-aaact----taaagtt--aaactgagttcct
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21196516 19 -  23169006 cgattt-aaact------------------gagctcct
i otoGar3.GL873541             C 0 C 0
s camFer1.KB017763               2813642 38 -   6207710 tgggttaaaaattaaatcaagtttaaaacggagtttct
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10849431 37 +  17242564 tggatt-acaatgaaatcaagttggaaactgaattcct
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84043717 37 +  91571448 taggtt-aaaattaaatcaagttaaaaactgagttcct
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6824617 37 -  14545593 tggatt-accattaaatcaagttaaaaactgagttcct
i cerSim1.JH767782             C 0 I 221
s felCat8.chrA3                134115956 32 + 140925898 -----t-aaaattacatcaagttaaagaccaagttcct
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57847921 37 -  64289059 ttaact-gaaattaaatcaagttaaagaccaagttcct
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13619978 37 -  19722643 tggatt-aaaattaaatcaggttaaagaccaagctcct
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3042693 37 +   4816872 tggatt-aaaattagatcaagttaaagaacgagttcct
i odoRosDiv1.KB229025          C 0 C 0
s loxAfr3.scaffold_20           27629345 37 -  46401353 ataatt-caaattaagtatagttaaaaattcagttcct
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9976038 37 +  24341844 ataatt-aaaattaagtatagttaaaaattcagttccc
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1041433 25 -   2788317 ttgatt-aaaattaa----agtttaaaatC--------
i dasNov3.JH567436             C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e vicPac2.KB632437              19219693 377 -  22931326 M
e ornAna1.Contig53964                668  0 -      2070 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221220               3809684  0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH737491                498705 1755 -    628740 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e sarHar1.chr1_GL834688_random    533615 5587 +   3395230 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530538996 3149 + 748055161 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e pteAle1.KB030580              19418878 25 -  23789964 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=440903.000000
s hg38.chr8_KI270814v1_alt         89582 94 +    141812 cagtttctctagccacatttcaagtg--caataa-tcacatgtgtctagcgactta---ctatatttaacaaagcagatataccccatttccatcaatgc
s ponAbe2.chr8                  59059104 94 + 153482349 cagttgctctagccacacttcaagtg--caataa-tcacatgtgtctagagactta---ttatatttaacaaagcagatataccccatttccatcaatgc
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48137768 95 + 100215132 cagttgctctagccacatttcaagtg--caataattcacatgtgtctagagattta---ttatatttaacaaagcagatatatcccatttccatcaatgc
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99350819 92 + 108792865 cagctgcgctaaccacatttcaaatg--cagtag-tcacatgtggctagagactca---ttaggcttg--aaagcagatgcacaccatttccgtcaacgt
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24017414 94 +  27210278 cagctgcactaaccacatttcaaatg--caatag-tcacatgtggctagagactca---ttagactcgataaagcagatacacaccatttccatcaatgt
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21196535 96 -  23169006 cagctgcactagctacatctcaagtgttcaacag-ccatgagtggctagtgatgac---ttatactcgataaggtacatataaaccatttccaccaatgt
i otoGar3.GL873541             C 0 C 0
s camFer1.KB017763               2813680 84 -   6207710 cagc---------catattttaaaggctcggtag-ccacgtgtggt-agctgcttc---ttatactagatacagcagatgt--accacttccatcactgc
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10849468 95 +  17242564 cagttgcgctag-cgtatttcaggtgctcgagag-ccatgtgtgctgagcggcttc---tcatactggatacagcagatgcagaccatttccatcaaagc
i orcOrc1.KB316907             C 0 I 218
s equCab2.chr15                 84043754 99 +  91571448 cagttgcactagccatatttcaagtgctcaaaag-ccacatgtgcctagtggcttatatttatattggatagagcagatacagaccatttccagcaatgc
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6824875 96 -  14545593 cagttgcactagccacatttcaagtgctcaacag-ccacatgtggccagtggctta---ttatattggatagagcagacagaggccatttccatcaatgc
i cerSim1.JH767782             I 221 C 0
s felCat8.chrA3                134115988 91 + 140925898 tagctgcactagccatatttccagtgctcaagag-ccacagctggttactggttta---ttacactgga-----cagatgtagaccattgtcatcagtgc
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57847958 91 -  64289059 tagttgcactagccctatttcaagtgttcaacag-ctacatgtggctgatggctta---ttatactgaa----gcaggtatcaa-catttccatcaaagc
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13620015 92 -  19722643 tagttgcaacagccatatttcaagtgctcaagac-ctccacgaggctactggctta---ttatgtggga----gtagatactggccagttccatccatgc
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3042730 92 +   4816872 tagttgcactagccatatttcaagtgctcaagag-caacacgtggctagtggctta---ttacatggga----gcagataccgaccatttccatccatgc
i odoRosDiv1.KB229025          C 0 C 0
s loxAfr3.scaffold_20           27629382 94 -  46401353 cagtcacactagcctca-ttcaagtgcccaggag-tcacatgtggctagtggcttc---acat-ttggatagagcagacataaactatttctatcaacac
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9976075 94 +  24341844 cagtcacactagccaca-ttcaagtgcccaacag-tcacgagtagctagtggctta---acac-ttggacagagcagatatacaccatttctatcaacac
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1041458 31 -   2788317 ---------------------------------------------------------------------Tagagtagatatagataatttccatgaaagc
i dasNov3.JH567436             C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e vicPac2.KB632437              19219693 377 -  22931326 M
e ornAna1.Contig53964                668  0 -      2070 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221220               3809684  0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH737491                498705 1755 -    628740 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e sarHar1.chr1_GL834688_random    533615 5587 +   3395230 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530538996 3149 + 748055161 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e pteAle1.KB030580              19418878 25 -  23789964 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=217242.000000
s hg38.chr8_KI270814v1_alt         89676 28 +    141812 aaa-aagttctatt-ggacagTAACACTTT
s ponAbe2.chr8                  59059198 28 + 153482349 aaa-aagttctatt-ggacagTAACACTTT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48137863 28 + 100215132 aaa-aagttctatt-ggacagTAACACTTT
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99350911 28 + 108792865 aaa-aagttctatt-gggcaCCAACACTTT
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24017508 28 +  27210278 aaa-aagttctatt-gagcaCCAACACTTT
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21196631 28 -  23169006 aaa-aaatcctgct-gatcagcAACACTTT
i otoGar3.GL873541             C 0 I 286
s camFer1.KB017763               2813764 29 -   6207710 aca-aagttctggtgggacagcAATGGTTT
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10849781 28 +  17242564 aaa-aaGTTCTGGT-GGACAGCAATGCTTC
i orcOrc1.KB316907             I 218 C 0
s equCab2.chr15                 84043853 28 +  91571448 -aaaaagttctatt-agacagcAACACTTT
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6824971 28 -  14545593 -aacaagttctatt-agacagcAAAGCTTT
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134116079 27 + 140925898 -aa-aagttctact-gaacaTCAATGCCTT
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57848049 27 -  64289059 -aa-aagttctact-gaacaTCAATGCTTT
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13620107 27 -  19722643 -aa-aagttctact-gaatggcAATGCCTT
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3042822 27 +   4816872 -aa-aagttctatt-gaacagcAATGCCTT
i odoRosDiv1.KB229025          C 0 C 0
s loxAfr3.scaffold_20           27629476 28 -  46401353 aga-aagttccatt-ggagagcAATGCTTT
i loxAfr3.scaffold_20          C 0 I 1
s triMan1.JH594629               9976169 28 +  24341844 aga-aagttctgtt-agatagcAATGCTTT
i triMan1.JH594629             C 0 I 1
s dasNov3.JH567436               1041489 28 -   2788317 aaa-aaattctatt-ggacagcAATGCTTT
i dasNov3.JH567436             C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e vicPac2.KB632437              19219693 377 -  22931326 M
e ornAna1.Contig53964                668  0 -      2070 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221220               3809684  0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH737491                498705 1755 -    628740 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e sarHar1.chr1_GL834688_random    533615 5587 +   3395230 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530538996 3149 + 748055161 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e pteAle1.KB030580              19418878 25 -  23789964 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=78417.000000
s hg38.chr8_KI270814v1_alt         89704 19 +    141812 CAACAAATGGCTTTTTAAT
s ponAbe2.chr8                  59059226 19 + 153482349 CAACAAATGGCTTTTTAAT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48137891 19 + 100215132 CAACAAATGGTTTTTTAAT
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99350939 19 + 108792865 CAACAAATGGCTTTTGAAA
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24017536 19 +  27210278 CAACAAATGGCTTTTGAAA
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21196945 19 -  23169006 cAGTGAATGGCTTTTAAAA
i otoGar3.GL873541             I 286 C 0
s camFer1.KB017763               2813793 19 -   6207710 GGACCAACAGATTAAAAAA
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10849809 18 +  17242564 AGACGAGTAGCCT-AAAAA
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84043881 19 +  91571448 AGACCAAGGGCTTAAAAAA
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6824999 19 -  14545593 AGGGCAATGGCTTAAAAGA
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134116106 19 + 140925898 ATACCAATAACTTAAACGt
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57848076 19 -  64289059 AAACCAATAGCTTAAAAAA
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13620134 19 -  19722643 AACCCAACAGCTTAAACAA
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3042849 19 +   4816872 AACCCAATAGCTTAAACAA
i odoRosDiv1.KB229025          C 0 C 0
s loxAfr3.scaffold_20           27629505 19 -  46401353 AGACTAATGGCttaaaaaa
i loxAfr3.scaffold_20          I 1 C 0
s triMan1.JH594629               9976198 19 +  24341844 AGACTAATGGCTTAAAAAA
i triMan1.JH594629             I 1 C 0
s dasNov3.JH567436               1041517 19 -   2788317 GGACCAAAGGCTTTAAAAT
i dasNov3.JH567436             C 0 I 7496
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e vicPac2.KB632437              19219693 377 -  22931326 M
e ornAna1.Contig53964                668  0 -      2070 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221220               3809684  0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH737491                498705 1755 -    628740 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e sarHar1.chr1_GL834688_random    533615 5587 +   3395230 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530538996 3149 + 748055161 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e pteAle1.KB030580              19418878 25 -  23789964 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-10939.000000
s hg38.chr8_KI270814v1_alt         89723 5 +    141812 A-Gttt
s ponAbe2.chr8                  59059245 5 + 153482349 A-Gttt
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48137910 5 + 100215132 A-Gttt
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99350958 5 + 108792865 A-Gttt
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24017555 5 +  27210278 A-Gttt
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21196964 5 -  23169006 G-GTTT
i otoGar3.GL873541             C 0 C 0
s camFer1.KB017763               2813812 6 -   6207710 AAATAT
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10849827 6 +  17242564 AATTTT
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84043900 6 +  91571448 Cttttt
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6825018 6 -  14545593 AATTTT
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134116125 3 + 140925898 ---ttt
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57848095 4 -  64289059 A--ACT
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13620153 4 -  19722643 A--TTT
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3042868 5 +   4816872 A-tttt
i odoRosDiv1.KB229025          C 0 C 0
s loxAfr3.scaffold_20           27629524 5 -  46401353 -aattt
i loxAfr3.scaffold_20          C 0 I 176
s triMan1.JH594629               9976217 5 +  24341844 -ATCtt
i triMan1.JH594629             C 0 I 2
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e vicPac2.KB632437              19219693 377 -  22931326 M
e ornAna1.Contig53964                668 0 -      2070 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221220               3809684 0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH737491                498705 1755 -    628740 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e sarHar1.chr1_GL834688_random    533615 5587 +   3395230 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929605                579960 0 +   1015623 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736 1 +    779542 I
e pelSin1.JH207189               1424965 0 +   1874153 I
e melUnd1.JH556573                751858 2 +  10614383 I
e monDom5.chr1                 530538996 3149 + 748055161 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e dasNov3.JH567436               1041536 7496 -   2788317 I
e pteAle1.KB030580              19418878 25 -  23789964 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=265663.000000
s hg38.chr8_KI270814v1_alt         89728 50 +    141812 t-aagcagctttattgaagtgtaattgacatacaataagccatacacattt
s ponAbe2.chr8                  59059250 50 + 153482349 t-aagcagctttattgaagtgtaattgacatacaataagccatacacattt
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48137915 50 + 100215132 t-aagcagctttattgaagtgtaattgacatacaataaaccatacacattt
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99350963 48 + 108792865 t-aagcagctttattgaagtgtcatggacagacaataaac--cacacattt
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24017560 50 +  27210278 t-aagcagctttattgaagtgtcatggacagacaataaaccacacacattt
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21196969 40 -  23169006 T-TAGCAGCTTTAGGGAGATGGAAGTGACATA----------CACACAATG
i otoGar3.GL873541             C 0 C 0
s camFer1.KB017763               2813818 34 -   6207710 T-AAGCAGCttt---aaggtataactgatataca-------------actt
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10849833 48 +  17242564 T-AAGCATCTCTG--Aaggtgtaactgatgtacaataacctgcccatattc
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84043906 51 +  91571448 taaaacagctttattgaggtgtaattgacatacaatgaactgcacacattt
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6825024 46 -  14545593 T-AAGCAGC----ttgagctatgactgacacacaataaattgcacacatct
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134116128 50 + 140925898 t-aagcagctttataaaaacgtaatcgacatgcaactagctgtacacattt
i felCat8.chrA3                C 0 I 1
s canFam3.chr17                 57848099 50 -  64289059 T-aagcacctttattaaggtataattgacatatagtaagctacacacactt
i canFam3.chr17                C 0 I 175
s musFur1.GL896914              13620157 50 -  19722643 T-AAGCAACtttattaaggtataattaacatataagaagctacccacattt
i musFur1.GL896914             C 0 I 1
s odoRosDiv1.KB229025            3042873 50 +   4816872 t-aagcagctttattaaggtataatcaacatataatatgctacccacattt
i odoRosDiv1.KB229025          C 0 I 1
s loxAfr3.scaffold_20           27629705 50 -  46401353 t-aAAcagttttactgaggtataattaacatacaataaactgtgtgtattc
i loxAfr3.scaffold_20          I 176 C 0
s triMan1.JH594629               9976224 50 +  24341844 t-aaacagttttactgaggtggaattgacatacaataaactgcatgtgttt
i triMan1.JH594629             I 2 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e vicPac2.KB632437              19219693 377 -  22931326 M
e ornAna1.Contig53964                668  0 -      2070 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221220               3809684  0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH737491                498705 1755 -    628740 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e sarHar1.chr1_GL834688_random    533615 5587 +   3395230 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530538996 3149 + 748055161 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e dasNov3.JH567436               1041536 7496 -   2788317 I
e pteAle1.KB030580              19418878 25 -  23789964 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=583898.000000
s hg38.chr8_KI270814v1_alt         89778 192 +    141812 aaagtatatgccctgatacattgtaacacac----------------ggatacacc--tatgaaatt------aaatcc-agattatgaatgtactctg-------tcacccccag---atatttctctgac------ccctatttgcaat---------cccagctccttaaccc--------caa----------tccctagcaatcactgatctt-ctttgccaccacagaactc--tgcattt-tctagtattttat-aca
s ponAbe2.chr8                  59059300 193 + 153482349 aaagcatatgccctgatacattataacacat----------------ggatacacc--tatgaaact------aaaaccgagattgtgaatgtactctg-------tcacccccag---atatttctttgag------ccctatttgcaat---------cccagctccttaaccc--------caa----------tccctagcaataactgatctg-ctttgccaccacagaactc--tgcattt-tctagaattttat-ata
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48137965 192 + 100215132 aaagcatatgccctgatacattataacacac----------------ggatacacc--tatgaaact------aaaatccagattgtgaatgtactctg-------tca-ccccag---atatttctttgag------ccctatttgcaat---------cccagctccttaaccc--------caa----------tccctagcaatcactgatctg-ctttgccaccacagaactc--tgcattt-tctagaattttat-ata
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99351011 202 + 108792865 aaag--tgtgacttgatatgctacaacccat----------------ggatactcc--tatgaaactatcaccaaaatc-agattgggaaagtaccctc-------tcaatccgggaggatgtttccttgtg------ccctttttgctgt---------cccagttccctacctg--------cac---------gtctctggcaacccctgatctg-cttctttgccacagaacactgtgcattt-tctggaattttat-ata
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24017610 202 +  27210278 aaag--tatgacttgatatgctccaacccat----------------tgatacttc--tatgaaactatcaccaaaatc-agattgggaaagtaccctc-------tcaacccgagagaatgtttccttgtg------ccctttttgctat---------cccagttccctacccc--------caa---------gtctctggcaacccctgatctg-cttctttgccacagaacactgtgtgttt-tctggaattttat-ata
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21197009 180 -  23169006 AGAG----------------tgacaacatgt----------------ggatacagc--cacg-aactatcaccaacatccagactctgaatgtgtccca-------tca-ccccag---atg--------------------ggctgcaag---------cccaggtcctcacccc--------cacccatctcctgtgccccataaccactgatctgcctctgtcaccacagagtactctgcagtt-tctaacactgtat-atg
i otoGar3.GL873541             C 0 C 0
s camFer1.KB017763               2813852 199 -   6207710 aaagttcaccatttgataagttatgatgtat----------------acaca-gtc--cacgaaaccatcgccaagatctagccagtgaacgtatcca--------tcacccccag---aagtttctttgcg------tc-cttttccaat-ccccatttcccagctcctcactct--------------------gccccaggcaacc----atctgtttccgccaccacagaataatcctcattt-tctaggacttgcta---
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10849881 214 +  17242564 aaagtgcacaatttgataagtcacagcacat----------------acatacacc--cacaaaaccatcgcccaaatccagacagtgaacgtaccca--------tcacccccag---aagcttctttgca------cc-cttttgcaat-tcccacctcccagctgctcactccccaatctccgg---------tccccaggaaaccgctgatctgcgtccgtcaccacagaataatctacgttt-cctaggactttct----
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84043957 228 +  91571448 aaagtgtacaatttgacaagttatgacatatatatatatgtatatatacacacacc--caagaaaccatcaccaaaatccagacagtgaa-atagcca--------ccatccacaa---aagttactttgtg------ccgcatttgcaag--cccatcccccagctcctcactcctcaatctccag---------tccccaggcaa-caatgatctgcttctgtcaccagagaacagtctgcattt-tctccactttcat----
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6825070 192 -  14545593 aacgtgtgcaatttgacaagttatgacatatatat----------------acacc--cacgaaaccatcgccaaaatccagacagtgaa-atagcca--------ccacccacaa---aag----tctgtg------tc-cttttgcaag--cccatctcccagctcctcacccgccaatctccag---------tcc----------------ctgcttctgtcatcacagaatagtctgcattt-tctagaatttcat----
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134116179 201 + 140925898 aagatgtacaatttgctaagttatgacacat--at------------acacgcacc--catgaaacggtacccaagatccagacagcgaacacatcca--------tc--ccccaa---aagtatctttgtg------ccccctttgccac-ccccaaccccctgctcct--------------cac---------ttcctgggctgccactgctctacttctgtcaccacagaacagtttgtgttt-tctagaatcttat----
i felCat8.chrA3                I 1 C 0
s canFam3.chr17                 57848324 209 -  64289059 aaagtgtacaatttggtaagttatgacacat--at------------acacacacc--cgttaaaccagtaccaaaatcctgatagtgaacatatatatatccatccc--ccaaaa---aagtttctttgtg------ctcctcttacaat-ccccatctcccagttcct--------------cag---------tccctgggcagccactgatctaattctgtcagcaaagaatagtttgcattt-cccagaattgtat----
i canFam3.chr17                I 175 C 0
s musFur1.GL896914              13620208 206 -  19722643 aaagtatacaatttggtaagttatgacatatacat------------acacacacccacatcaaacccttgtccaaatccagacagtgaacatatcca--------cc--ccctaa---aagtttctttgtg------ccccttctgcaag-ccccacctcccagctcct--------------cgg---------tccctggacagccaccgatctacttctgtcaccagagaacagttttcatttccccagaactgtac----
i musFur1.GL896914             I 1 C 0
s odoRosDiv1.KB229025            3042924 209 +   4816872 aaagtgtacaatttagt-agtcatgacatatatac------------acatacacc--catcaaaccatcgccaaaatccagatagtgaacatatccat-------cc--ccctaa---aagtttctttgtgcCCCCCCcccttttgcaat-ccccatctcccagctcct--------------cag---------tccctgggcagccactgatctacttttgtcaccagagaatagtttgcattg-cccggaattgtac----
i odoRosDiv1.KB229025          I 1 C 0
s loxAfr3.scaffold_20           27629755 208 -  46401353 aaagtgcacaatttgataagttacgacatgt------------------ataca-c--aatgaaatcattgccaaaatccagagaatgaacacatcca--------tcaccccca----aagattccttgta------ctccttttgtaatcccccacctccaagcttctcatccccaac----------------tccccaggcaaccactgatctgcctctgtcaccattcaatagtctgaattt-tctagaattatat-ata
i loxAfr3.scaffold_20          C 0 I 1602
s triMan1.JH594629               9976274 209 +  24341844 aaagtgtacaatttgataagttatgacatgt------------------atacacc--aatgaaatcattgccaaaatcaagc-agtgaacacaccta--------tcacccc------aaagtttcctgta------ctcctttAGTAAT-CCCCATCTCcaaacttctcatcccccactctccag---------tccccaggcaaccactgatctgcttctgtcaccactcaacaatttgaattt-tctagaactgtat----
i triMan1.JH594629             C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e vicPac2.KB632437              19219693 377 -  22931326 M
e ornAna1.Contig53964                668   0 -      2070 I
e tetNig2.chr10                  6379385   0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382   0 -   6649201 I
e hapBur1.JH425491                252157   0 -   1273513 I
e neoBri1.JH422308               3491820   0 -   5414369 I
e araMac1.AOUJ01470298               637   0 -       895 I
e takFla1.AOOT01113665               306   0 +       323 I
e fr3.HE591725                    289786   0 -    411779 I
e ficAlb2.chr2                 148476508   0 + 157563209 I
e anoCar2.chr1                 148577473   4 + 263920458 I
e pseHum1.KB221220               3809684   0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214   0 -  25666195 I
e allMis1.JH737491                498705 1755 -    628740 I
e falPer1.KB390952               2753956   0 -  18327016 I
e falChe1.KB397350               1707310   0 -   3649919 I
e macEug2.GL109592                105897   0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802   0 +   2102797 I
e sarHar1.chr1_GL834688_random    533615 5587 +   3395230 I
e melGal1.chr7                  34310641   0 -  38723565 I
e anaPla1.KB742696               1254472   0 -   1270250 I
e amaVit1.AOCU01222764              1324   0 -      1397 I
e apaSpi1.KB929605                579960   0 +   1015623 I
e cheMyd1.KB605988                134509   0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736   1 +    779542 I
e pelSin1.JH207189               1424965   0 +   1874153 I
e melUnd1.JH556573                751858   2 +  10614383 I
e monDom5.chr1                 530538996 3149 + 748055161 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e dasNov3.JH567436               1041536 7496 -   2788317 I
e pteAle1.KB030580              19418878  25 -  23789964 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-332.000000
s hg38.chr8_KI270814v1_alt         89970 2 +    141812 ga
s ponAbe2.chr8                  59059493 2 + 153482349 ga
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48138157 2 + 100215132 ga
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99351213 2 + 108792865 tg
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24017812 2 +  27210278 tg
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21197189 2 -  23169006 ca
i otoGar3.GL873541             C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e musFur1.GL896914              13620414 0 -  19722643 C
e vicPac2.KB632437              19219693 377 -  22931326 M
e camFer1.KB017763               2814051 0 -   6207710 C
e odoRosDiv1.KB229025            3043133 0 +   4816872 C
e canFam3.chr17                 57848533 0 -  64289059 C
e felCat8.chrA3                134116380 0 + 140925898 C
e ornAna1.Contig53964                668 0 -      2070 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221220               3809684 0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH737491                498705 1755 -    628740 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e sarHar1.chr1_GL834688_random    533615 5587 +   3395230 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929605                579960 0 +   1015623 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736 1 +    779542 I
e pelSin1.JH207189               1424965 0 +   1874153 I
e melUnd1.JH556573                751858 2 +  10614383 I
e monDom5.chr1                 530538996 3149 + 748055161 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e dasNov3.JH567436               1041536 7496 -   2788317 I
e equCab2.chr15                 84044185 0 +  91571448 C
e triMan1.JH594629               9976483 0 +  24341844 C
e loxAfr3.scaffold_20           27629963 1602 -  46401353 I
e pteAle1.KB030580              19418878 25 -  23789964 I
e cerSim1.JH767782               6825262 0 -  14545593 C
e orcOrc1.KB316907              10850095 0 +  17242564 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=90318.000000
s hg38.chr8_KI270814v1_alt         89972 17 +    141812 atatatggaatcatcca
s ponAbe2.chr8                  59059495 17 + 153482349 gtatatggaatcatcta
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48138159 17 + 100215132 gtatatggaatcatcca
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99351215 17 + 108792865 gtatctggaatcatcca
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24017814 17 +  27210278 gtatctggaatcaccca
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21197191 17 -  23169006 atatgtggaatcacaca
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19220073 17 -  22931326 atacgtggaatcacatg
i vicPac2.KB632437             M 377 C 0
s camFer1.KB017763               2814051 16 -   6207710 -tacgtggaatcacacg
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10850095 17 +  17242564 atacatggaattctacg
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84044185 17 +  91571448 atatgtggaatcacata
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6825262 17 -  14545593 atgtatggactcatgta
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134116380 17 + 140925898 acatacggagccgcgta
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57848533 17 -  64289059 gtatctggaatcatggg
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13620414 17 -  19722643 acctccggaatcctgcg
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3043133 17 +   4816872 atatctgggatcatgtg
i odoRosDiv1.KB229025          C 0 C 0
s triMan1.JH594629               9976483 17 +  24341844 atatatagaatcattca
i triMan1.JH594629             C 0 I 1519
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e ornAna1.Contig53964                668  0 -      2070 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221220               3809684  0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH737491                498705 1755 -    628740 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e sarHar1.chr1_GL834688_random    533615 5587 +   3395230 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530538996 3149 + 748055161 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e dasNov3.JH567436               1041536 7496 -   2788317 I
e loxAfr3.scaffold_20           27629963 1602 -  46401353 I
e pteAle1.KB030580              19418878 25 -  23789964 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=262058.000000
s hg38.chr8_KI270814v1_alt         89989 110 +    141812 ac-tgtactcc--------------------------------------------------ttttcatcggatttcttgcataaatattttgagactgagcata-attactttgagattta---------------------ttaatgtagttgtgtgtgccagtagtttactcctttttctt
s ponAbe2.chr8                  59059512 110 + 153482349 at-tgtactcc--------------------------------------------------ttttcattggatttcttgcataaatattttgagactgagcata-attactttgagattca---------------------ttcatgtagttgtgtgttccagtagttcactcctttttctt
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48138176 105 + 100215132 at-tgtactcc--------------------------------------------------ttttcatcggatttcttgcgtaaatattttgagactgagcata-attaatttgagattca---------------------ttcatgtagttgtgtgtgccagtagtt-----ctttttctt
i nomLeu3.chr16                C 0 C 0
s calJac3.chr14                 99351232 111 + 108792865 gcatgtgtgcc--------------------------------------------------ttttcatctggcttcctgcataattactttgggactgagcata-attgctgtgcgattca---------------------ttcatgtagttgcgtgtaccagtagctcacttctttttctt
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24017831 111 +  27210278 gcatgtgtgcc--------------------------------------------------ttttcatctggtttcctgcataattactttgggactgagcata-attactatgcgattca---------------------ttcccgtagttgtgtgtaccagtagttcacttctttttctc
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21197208 178 -  23169006 gtatacactcctttACATGGAGCTGTCGACGCAGTTCACGGAATCATTTAGTACACACTCATTTTCATCTGGTGCCTTTCATAATTATTTTGAGACTGAGCACA-ATTACTTTGAGACTCACTTTTGAGCACCTTGTTGCTGCTCATGTTGTTGTAT----CAATACTGCAttctcttttctt
i otoGar3.GL873541             C 0 I 209
s vicPac2.KB632437              19220090  85 -  22931326 gcatgcattcc--------------------------------------------------tttctgcc-tgcttccttcata----------------------cctactttgagatcca---------------------tccatgttgttgcat----tgatggctcattccttttccct
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2814067  85 -   6207710 gcatgcattcc--------------------------------------------------tttctgcc-tgcttccttcata----------------------cctactttgagatcca---------------------tccatgttgttgcat----tgatggctcattccttttccct
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10850112  85 +  17242564 gcacgcactgc--------------------------------------------------tctttatc-ggcttctttcgca----------------------ctcgctttgagatcca---------------------tccgtgctgctgcag----caacggctcattcccgtttctt
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84044202 103 +  91571448 gcatgcagtcc--------------------------------------------------tctttgtc-agcttccttcgtaattgctttgagattgagcaca-cctactttgacacgcg---------------------tccacgctgttgcat----ccagagctcagtc---tttctt
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6825279 103 -  14545593 ggatgcactcc--------------------------------------------------tttttgtc-ggcctccttcataactgctttgagattgagcaca-cctactttgacatcca---------------------tccatgtcgttgcat----caagagctcactc---gttttt
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134116397  90 + 140925898 gtacgtgctcc--------------------------------------------------ctttcgt--ggctgcctgcgtaaccgcgctgagcgcgagcaca-cctgcctggagagcca---------------------tcc------------------acggcccgctccttgtcct-
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57848550 102 -  64289059 gcatgcactcc--------------------------------------------------tttccgt--ggcatc----gtatctggtttgagagtgagcactccttacttggagaggcg---------------------tccatgctggtgcat----caacagtccactcttgttcctt
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13620431  98 -  19722643 gcacgcactcc--------------------------------------------------tctctgt--ggctgc--------ctgcctggggagtgagcactccctacttggagagcca---------------------tccatgctgcagcac----caacagtgcactcctgttcctc
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3043150 105 +   4816872 acatgcacttc--------------------------------------------------tctctgt--ggatgccttcgtatctgctttgagagtgagcact-cctacttggagagcca---------------------tctgtgctggggcat----caacagtccactcctgttcctc
i odoRosDiv1.KB229025          C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e ornAna1.Contig53964                668   0 -      2070 I
e tetNig2.chr10                  6379385   0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382   0 -   6649201 I
e hapBur1.JH425491                252157   0 -   1273513 I
e neoBri1.JH422308               3491820   0 -   5414369 I
e araMac1.AOUJ01470298               637   0 -       895 I
e takFla1.AOOT01113665               306   0 +       323 I
e fr3.HE591725                    289786   0 -    411779 I
e ficAlb2.chr2                 148476508   0 + 157563209 I
e anoCar2.chr1                 148577473   4 + 263920458 I
e pseHum1.KB221220               3809684   0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214   0 -  25666195 I
e allMis1.JH737491                498705 1755 -    628740 I
e falPer1.KB390952               2753956   0 -  18327016 I
e falChe1.KB397350               1707310   0 -   3649919 I
e macEug2.GL109592                105897   0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802   0 +   2102797 I
e sarHar1.chr1_GL834688_random    533615 5587 +   3395230 I
e melGal1.chr7                  34310641   0 -  38723565 I
e anaPla1.KB742696               1254472   0 -   1270250 I
e amaVit1.AOCU01222764              1324   0 -      1397 I
e apaSpi1.KB929605                579960   0 +   1015623 I
e cheMyd1.KB605988                134509   0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736   1 +    779542 I
e pelSin1.JH207189               1424965   0 +   1874153 I
e melUnd1.JH556573                751858   2 +  10614383 I
e monDom5.chr1                 530538996 3149 + 748055161 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e dasNov3.JH567436               1041536 7496 -   2788317 I
e triMan1.JH594629               9976500 1519 +  24341844 I
e loxAfr3.scaffold_20           27629963 1602 -  46401353 I
e pteAle1.KB030580              19418878  25 -  23789964 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=133380.000000
s hg38.chr8_KI270814v1_alt         90099 63 +    141812 gccatatactgttccatcatatgga--tacactatcgtttttttaggcagacaccttttggtgaa
s ponAbe2.chr8                  59059622 63 + 153482349 gccatatactgttccatcatacgga--cacactattgtttttttaggcagacacctgttggtgaa
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr16                 48138281 63 + 100215132 gccatatactgttccatcatatgga--tacactatcatttttttaggcagacacctgttggtgaa
i nomLeu3.chr16                C 0 N 0
s calJac3.chr14                 99351343 59 + 108792865 ggccagtactgttccatcatatggc--tacactgccg----tttagccagacacctgttgatgga
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24017942 59 +  27210278 agccagtactgttccatcatatggc--tacattgcca----tttagccgggcacctgttgatgga
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21197595 62 -  23169006 gctgaaaactattccattgtatgga--tacactacaa-tttgtcacccatacaactgttgataga
i otoGar3.GL873541             I 209 C 0
s vicPac2.KB632437              19220175 24 -  22931326 tctgaacaggatt-----------------------------------------ctgctgACTGG
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2814152 48 -   6207710 tctgaacaggattccgctgtctggc-----------------ttatccagacacctgctgactgg
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10850197 48 +  17242564 gctgaacagctgtccatcacctggc-----------------ttatgcagacaactgctgacagg
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84044305 65 +  91571448 gctgagcagtattccatcatctggcgatatactacaatctgcttatccagacacctgttgacaca
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6825382 63 -  14545593 gctgagcagtatcacatcgtctggc--tacatgacaatctgtttatccagacacctgttgacaga
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134116487 59 + 140925898 -ctgagca---gtccacggcctggc--tacgccaccgtctgcttatccagacacctgccaacaga
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57848652 63 -  64289059 gctgagcactgctccacagtctggc--cagactacaatcagcttatcctgacacctgctcacaga
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13620529 62 -  19722643 gctgagcactgctgcacggtcccgc--aagactacagtcgggggatcacgacgcctg-tcacagg
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3043255 63 +   4816872 gctgagcactgctccacggtctgga--gagactacaatcagcttgtcccaacacctgctcacaga
i odoRosDiv1.KB229025          C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e ornAna1.Contig53964                668  0 -      2070 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221220               3809684  0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH737491                498705 1755 -    628740 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e sarHar1.chr1_GL834688_random    533615 5587 +   3395230 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530538996 3149 + 748055161 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e dasNov3.JH567436               1041536 7496 -   2788317 I
e triMan1.JH594629               9976500 1519 +  24341844 I
e loxAfr3.scaffold_20           27629963 1602 -  46401353 I
e pteAle1.KB030580              19418878 25 -  23789964 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=346772.000000
s hg38.chr8_KI270814v1_alt         90162 75 +    141812 tgtttgagttgtttccagtttGGATGATGCTCTGGATGTCACATATAAAGATGTCA----------------AGGGACTCtttcaaataat
s ponAbe2.chr8                  59059685 75 + 153482349 tgtttgagttgtttccagtttGGATGATGCTCCGGATGTCGCATATAAAGATGCCA----------------AGGGACTCtttcaaatagt
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99351402 87 + 108792865 tgtttgagttgtttccagtttgggggatactacagataccac----aaagatgccatgatcatttgtgGGATGGGGACTCtttcaagtagt
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24018001 87 +  27210278 tgtttgagttctttccagtttgggggatactacggatatcac----aaagatgccatgatcatttgtgGGACGGGGACTCtttcaagtagt
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21197657 91 -  23169006 catttaagtcttttccagtttaggggctactaAAGATATCACAAAAAAAGATGACAGGATTATTTGTGGGATGGGGACTCTTTCAAATCGT
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19220199 87 -  22931326 CTTCCCAGTGGTTCCCAACTTGGGGGCTACCACAAACCTTACAAATAAAGCTGCTCTGATGACTTGTGGGAT-GGA---Ctctcaaatggt
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2814200 87 -   6207710 cttcccagtggttcccaacttgggggctactacaaaccttacaaataaagctgctctgaTGACTTGTGGGAT-GGA---Ctctcaaatggt
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10850245 88 +  17242564 cttttgagttctttccagtttgggggctactacaaatcttacatataaggctgctctgaTTACTTGTGGGATGGGA---CTCTCCAATggt
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84044370 86 +  91571448 ct--tgagttgtttccagtttgggggctactacaaatcttagaaataaagctgctgtgattatttgtgGGATGGGG---Ctctcaaatagt
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6825445 85 -  14545593 c---tgagttgtttccaatttgggggctaccacaaatcttacaaataaagctgctatgattatttgtgcaaTGGGA---Ctctcaaatagt
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134116546 88 + 140925898 cttctgagtgctttccagtttgggggctactataaatcttacaaataaaggtgccatgattgctcgcgGGATGGGA---Ctctcaaacagc
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57848715 88 -  64289059 cttctgagttatttccagtttgggggctaccataaatcttacaaagaaaggtgctaggatgattcatgGCATGGGA---Ctctcaaatagt
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13620591 86 -  19722643 ctgtggagttattttcagttt-ggggttacaacaaa-cttacaaagaaaggtgttatgatgattcAGGGGCTGGGA---Ctctcaaatcag
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3043318 88 +   4816872 cttcggagttatttccagtttgggggctactacaaatcttacaaataaaggtgctacaatgattcgtgGGATGGGA---CTCTCAAATTgt
i odoRosDiv1.KB229025          C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e ornAna1.Contig53964                668  0 -      2070 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221220               3809684  0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH737491                498705 1755 -    628740 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e sarHar1.chr1_GL834688_random    533615 5587 +   3395230 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530538996 3149 + 748055161 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e dasNov3.JH567436               1041536 7496 -   2788317 I
e triMan1.JH594629               9976500 1519 +  24341844 I
e loxAfr3.scaffold_20           27629963 1602 -  46401353 I
e pteAle1.KB030580              19418878 25 -  23789964 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=172973.000000
s hg38.chr8_KI270814v1_alt         90237 62 +    141812 gatcagga-aggcc---tttttataaggtggcattggagcagagtgcaaaggaagcgaggcaga--------ga
s ponAbe2.chr8                  59059760 62 + 153482349 ggtcagga-gggcc---tttttaaaaggtggcattggagcagagtgcaaaggaagcgaggcaga--------ga
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99351489 64 + 108792865 g-tcaaaa-aggccttttttttataaggtggccttggagcagagcgcaaaggagacagggcaga--------ga
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24018088 62 +  27210278 g-tcaaaa-aggcc--ttttttataaggtggccttggagcagagtgcaaaggagacggggcaga--------ga
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21197748 43 -  23169006 G---GGCA-GGGCC---tct----------------gagcagagtaggaaggaagcaaagcaga--------ga
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19220286 66 -  22931326 gatcagga-aggcc---tttttagaagatgacac----agagagttcggaggaagcgaggccacgaggccatga
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2814287 66 -   6207710 gatcagga-aggcc---tttttagaagatgacat----ggagagttcgttggaagcgaggccacgaggccatga
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10850333 61 +  17242564 gaccagga-aggcc---tcttcagaaggtgacgtgc-agcagagtatgaaggaagcaaggcagc--------ta
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84044456 61 +  91571448 ggcca-ag-aggcc---tttttaggaggtgacatatgagcagaaggtgaaggaagtgaggcaga--------ga
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6825530 62 -  14545593 ggtca-ggaaggcc---tttttagaaggtgacatttgagcagaatgtgaaggaagtgaggccga--------ga
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134116634 58 + 140925898 ggtcgtaa-aggcc---ttctcagaaggtgacatttgagca----gagtgtgaagtgaggcccc--------ga
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57848803 56 -  64289059 ggtgg-ga-aggcc---ttttcaagaggagacatttgagca----gagta-gaagtgaggcaca--------ga
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13620677 57 -  19722643 ggtcg-ga-aggcc---ttttgagaaggtgacattcgagca----gtggagggagggagccaca--------ga
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3043406 57 +   4816872 ggttg-ga-aggcc---ctttgagaaggtgacatttgagca----gtggaggaagggagccaca--------ga
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19418903 57 -  23789964 GATCA-GA-AAGCC---TTTTTAGGAGGAGACAGTTGAGTG----GGCTACAAGGCGAGGCAGA--------GA
i pteAle1.KB030580             I 25 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e ornAna1.Contig53964                668  0 -      2070 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221220               3809684  0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH737491                498705 1755 -    628740 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e sarHar1.chr1_GL834688_random    533615 5587 +   3395230 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530538996 3149 + 748055161 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e dasNov3.JH567436               1041536 7496 -   2788317 I
e triMan1.JH594629               9976500 1519 +  24341844 I
e loxAfr3.scaffold_20           27629963 1602 -  46401353 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=10035.000000
s hg38.chr8_KI270814v1_alt         90299 1 +    141812 g
s ponAbe2.chr8                  59059822 1 + 153482349 g
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99351553 1 + 108792865 g
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24018150 1 +  27210278 g
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21197791 1 -  23169006 g
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19220352 1 -  22931326 g
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2814353 1 -   6207710 g
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10850394 1 +  17242564 g
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84044517 1 +  91571448 g
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6825592 1 -  14545593 g
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134116692 1 + 140925898 g
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57848859 1 -  64289059 g
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13620734 1 -  19722643 g
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3043463 1 +   4816872 g
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19418960 1 -  23789964 A
i pteAle1.KB030580             C 0 C 0
s triMan1.JH594629               9978019 1 +  24341844 G
i triMan1.JH594629             I 1519 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e ornAna1.Contig53964                668 0 -      2070 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221220               3809684 0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH737491                498705 1755 -    628740 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e sarHar1.chr1_GL834688_random    533615 5587 +   3395230 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929605                579960 0 +   1015623 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736 1 +    779542 I
e pelSin1.JH207189               1424965 0 +   1874153 I
e melUnd1.JH556573                751858 2 +  10614383 I
e monDom5.chr1                 530538996 3149 + 748055161 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e dasNov3.JH567436               1041536 7496 -   2788317 I
e loxAfr3.scaffold_20           27629963 1602 -  46401353 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=1938424.000000
s hg38.chr8_KI270814v1_alt         90300 388 +    141812 ccatgagaaaatctgggga----tagtgtactctgaactg-----aggggact-ctaacacaaaggtcatgggatggaagtgtgcctggcaggttcaaaggacagcTCTCTGTGTTCCTTCTAAAGGCTGCTTATATGAAAGGATAGGCACCCAGGCA-AAACTATTTCGGAGAATCAGAAGGTACTAAGTCAAATGGCCTGAA----TAAACCACCA--------AATGGCACAG-GCCATTtc-------------atctcatttaatccttacagttactctgagaagtaggtgc-tgtgacccccattttgcagacgtgggaacaaag-----agggggttgggccatccactttgcctccaaatcacacaact-attattatcagagtt-ggctgagaactctgaagccagagctctccctgTC--AGTT
s ponAbe2.chr8                  59059823 388 + 153482349 ccatgagaaaatctgggga----tagtgtactctgaactg-----aggggact-ctaacacaaaggtcatgggacagaagtgtgcctggcaggttcaaaggacagcTCTCTGTGTTATTTCTAAAGGCTGCTTATATGAAAGGATAGGCACCCAGGCA-AAACTATTTCGGAGAATCGGAAGGTACTAAGTCAAATGGCCTGAA----TAAACCACCA--------AATGGCACAG-GCCATTtc-------------atctcatttaatccttacaattactctgagaagtaggtgc-tgtgacccctattttgcagacatgggaacaaag-----agggggttgagccatccactttgcctccaaatcacacaact-attattatcagagtt-ggctgagaactctgaaaccggagctgtccgTATC--AGTT
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99351554 390 + 108792865 ccatgtgaggacctgggggaagtaagcacactctgttctgggccaaggggact-caaacacgaaggtcctggggcaggagtgtgcctggcaggttcaaaggatagcTCTC--CGTTCTTTCTAAAGGCTGCTTATCTGAAAGAACGGGTATCCAGGCAGAAAGTATTTTTGAGAAGCAGAAGGTACTGAGCAAAATGGCCTGAA----TAAACCACCA--------GACGGCACAGAGCCATtta-------------atttcacttaacccttacaattaatctgagaa----gtgc-tgtgacccc-atttggcaggtatggcaacaaaa-----acaggcttg---cctccaggttgcctccaaatcacacaacc-atcagcagcagagtt-ggc-gagaactgtgaagccagagctctgcctatcagagct
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24018151 374 +  27210278 ccacgtgaagacctggggg----aagcacactctgttccgggccaaggggact-caaacacaaaggtcctggggcaggattgtgcctggcaggttcaaaggatagcTCTC--CGTTCTCTCTAAAGGTTGCTTATCTGAAAGA------ATCCAGGCAGAAAGTATTTGTGAGAAGCAGAAGGTACTGAGCAAAATGGCCTGAA----TAAACCACCA--------GATGGCACAGAGCcattca-------------atcttacttaacccttacaattaatctgagaa----gtac-tgtgacccc-attttgcaggtatggcaac-aaa-----acaggcttg---cctccaggttgcctccaaatcacacaact-at---tagcagagtt-ggc-tagaactgtgaagccagagctctgcctATC--AGCT
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21197792 368 -  23169006 gcgggcgcacatcgggtag----aagcactctcccagcag-----cgggtgctgctaacaccaagggcctgggacagaaggacg-ctgacaggttcaaaaacaAGTTCTCTGTGGTCTTCCCAAAGGCAGCTTATCTGCAAGAATGGACACCCCAGCAGAAAAT-TTATGGAGAAGCAGAAGGTACTA--------GGTCTGCA----TAGGCCACCAAGCCATTTAACAGCACCCAGCCGTGTA-------------atctcatttactccttccaaccacactgagaagtcagtgc-tgttatccccattttgcagacatggaaacaaag-----agaggcttaagtCATCCTTTTTCC-----------------------CAGCAGAGTTGGGCTGGGAGCTCTGAAGCTAGACCAATTCCTGTG--TTTT
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19220353 382 -  22931326 ccccgtgaaaacctggtgg----agggacattcctggcag-----agggaactcctaacacaaaggccctgaggcaggtgcgcgcccagcaggttcaaagcacagTTTTCTATGTTCCTTCCAAAGGCGGCTTATCTGAAAGAATGGACATCCAGACAGAAAATCTTTTGGAGAAGCAGAAGGTCCTAGAAAAGGTGGACTGAA----TAAATCACCA--------AGTGGCACAGGGCCACGt--------------atcgcatgtgagccttacaactgctctgagaagcagg----tattatccccgttgtacagaaacgg----agag-----agagggtggagccacccaccttgcccccaaatcccacaacgaagcggcagcagagcTGAGCTGAGAG---TGAAGCCAGAGCGCTTCCTGTT--GCTC
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2814354 383 -   6207710 ccccgtgaaaacctggtgg----agggacattcctggcag-----agggaactcctaacacaaaggccctgaggcaggcgcgcgcccagcaggttcaaagcacagTTTTCTATGTTCCTTCCAAAGGCAGCTTATCTGAAAGAATAAATATCCAGACAGAAAATCTTTTGGAGAAGCAGAAGGTCCTAGAAAATGTGGACTGAA----TAAATCACCA--------ACTGGCACAGGGCCACGTA-------------atcgcatgtgagccttacaactgctctgagaagcagg----tattatccctgttttacagaaacgg----agag-----agagagtggagccacccaccttgcccccaaatcccacaacgaagtggcagCAGAGCTGAGCTGAGAG---TGAAGCCAGAGCGCTTTCTGTC--GCCC
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10850395 374 +  17242564 ccccgtgaaagcctggtgg----aagagcattcccggcag-----agggaattcctaacacaaaggccccgaggcag----gcacctggcagggtcaaagcacagTTTTCTATGTTCTTCCTGAAGGCTGCTTATCTGAAAGAATGAACATCCAGACAG-AAATCTTTTGGAGA---AGAAGGTCCCAGGTGAAGTGGCCTGAA----TAAATCACTA--------ACTGGCACAGGGCCACTTA-------------atcgcatgtaaggctcacaagtgctttgagaagtcgg----tgttacccccgttttacagaaatggaaacagag-----ggagagttaagccacccactttgcccccagatcccacaactaagcagc-----agctgagctgagaa---tgaggccagAGCCCTTCCCATC--ATTT
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84044518 384 +  91571448 ccatgtgaacatctggtgg----acgaagattctcggcag-----agggaattcctaacatgaaggccctggggcaggcgcgtgcccagtgagttcaaagaacagTTTTCTACGTTCTTTCCAAAGGCTGCTTATCTGAAAGAATGGTTACCTAGTCAGAAAATTTTGGCGAGAAGCAGAAGGTAGTAGGTAAGATGGCCTGAA----TAAATCCTTA--------AATGGCACAGGGCCATTTA-------------atctcatttaatccttaaaactactctgagaagtagg----tgttatcctcattttacagatatgaaaac--aa-----agaaggttaagccactcactgtgctcccaaattacacaactaggaagtagcagagctgagctgtgaacAGTGAAGGCAGAGC----CCCATC--CTTT
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6825593 381 -  14545593 ccatgtgaaaatctggta-------gaacactctcggcag-----agggaattcctaacacaaaggccctggggcaggcgtgtgcctagcagggtcaaagaacagTTTTCTAGGTTCTTTGCAAAGGTTGCTTATCTGAAAGAATGGTTACCCAGGCAGAAAATTTTGGGGGGAAACAGAAGGTAGTAGGTAAAATGGCCTGAA----TAAATCCCTA--------AATGGCACAGGGCcattta-------------atctcatttaatccttacaactactctgagaagtagg----tgttatctgcattttacagataagaaaacaaaa-----agagggtaaagccactcactttgcccccaaatcatagaactaagaagcagcagagctgagctgagc----tgaagccagtcctt--cctATC--ATTT
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134116693 379 + 140925898 ccctgggagaatccggtgg----aagagacttcccagcag-----aaggaatttctcacaggaaggccctgcggcaggagtgtgcctggtaggttca---a--agTTTTCTATGTGCTTTCCAAAGGCTGCTTCCCTGAACGAATGGGCATCCAGGCAAAGAGA-TTTTGCAGAAGCAGAAGCTGTTGGGTAAAATGGTC--------CAAATCTTTA--------AATGGCACTGGGCCGTTTG-------------Ctctcatttgacccttacaactgttctgagaagtatgtac-agttattcccattttacagatctgtaaagcaac-----agagggctgagtcaccccctcggcccccggatccc---agtgagaagaagcagagtcgagCTGAGAGGC-GGGAGCCTGAGCTTGACCTATC--ATTT
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57848860 382 -  64289059 ccacaggagaatctggcgg----aagagtgttcccagcag-----aaggaattcctaacatgaaggctctgaggcagcagtgtgcctggtggatttaaaga--aGTTTTCTATGTGCTTTCCAAAGACTGCTTATCTGAAAAAATGGGCACCCAGGCCAAAAGTTTTTTGGAGAAGCAGAAGGTATTAGATAAAATGGTC--------TAAATCCCAA--------AATGGCGGTGGGCtatttt-------------gtttcattcaaccctaataactattctgagaagtaggcac-agttatccccattatacagacatgcaaagcaag-----agagagctaagtcacccacttggcccccaaatccc---att-agaagcagcagagccgaagggagaggc-tgaagccagggcttGTCCTATC--ATTT
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13620735 381 -  19722643 ccgggggagatcc-agtgg----gagaaaattcct-gcag-----agggaattcctaacaggaaggcacggaggcagaagtgtgcctggcggattcaaaga--aGTTTTCTATGTGCTTTCCAAAGACCGCTTATTTAAAAGAATGAGCATGCAGGCAAAAAGGTTTTTGTAGAAGCAGATGGTATCGGGTACAATGGTC--------TAAATCCCTA--------AATGGCCCTGGGCGGTTTG-------------CTGtcatttaacccttacaactactctgagaagtaggtgc-agttatccccgttttacagatgggcaaagctag-----acaGGGCTAAGGTGCCCACCTGGTCCCCAAATCCC---AATGAGAAGAAGCAGAGTTGAGCAGAGAAGC-CGAAGCCACAGCttgtcccggc--attt
i musFur1.GL896914             C 0 I 6
s odoRosDiv1.KB229025            3043464 380 +   4816872 ccaggggagaacctggtgg----aagagcattcttggcag-----agggaattcctaacatgaaggccc-gaggcagcagcgtgcctggtggattcaaaga--aGTTTTCTATGTGCTTTCCAAAGACTGTTTATCTGAAAGAATAGGCACCCAGGTAAAGAGGTTTTTGGAGAAGCAGAAGGTATTAGGTAAAATGGTC--------TAAATCCCTA--------AATGGCACTGGGCCATTTG-------------ACctcatttaacccttaaaactattgtgagaagtaggtgcaagttatccccattttacagattcgcaaagcaag-----agagggctaagttacccacttggcccccagatccc---act---aagaagcagagttgagCCGAGAGGC-TGAAGGCAGAGCTTTTCCCAGC--ATGT
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19418961 351 -  23789964 -CATGTGACAACC-----------------TCCACGGAGA-----CCGGAAGCCCTAACACGAAG------------------TCCTGGCAGCTTCAAAGAGCTGTTTTATCCATTCTCTCCGCAAGCTGCTTGTCTGAAGGGATGGCCGCCCAGGCAGAAAATTTGGGGGAGAAGCCAAAGGTACTAGGTAAAGTGTCCTGAA----TAAATCGTTG--------AATGGCACAGGGAcattta-------------atctcttttcacccttacaaccacgctgagaagta------ggttagccccattttacagaaacgaaaacaaag-----agggggttaagccacccactttgctcccaagtcgcacaagtaagaaggagctgagcTGAGC----ACAC-AGGGACCAGAGCTGTCCCCATC--ATTC
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27631565 379 -  46401353 CCACAATAAAATTTA-AAA----AAATgcattcttggcag-----atggaactgctaacacaaaggccctgaggcaggtgtgtgcctggtaggctcaaagaacTGTT-TCTGCATTCTTTCTAAAGGCTGCTTATCTG-AAGAACAGGCAATCTGGCAGAAA-TTTTTTGGAGGAGCAGATGATGCTAGGTAAAACGGCCTGGAGTTGCAAATCACTA--------TATGGCACAGGGCCAGGTAACTTACCTAAACGATCTCAT--------------------------------t-tgttattcccattttacagatatgaaaacaaaggcttaaagagggtaagtcacccactttgccccaaagtgacacaactaagaagtagcagagttgggcttagaagtctaaagccagagctctttctaTC--ATTT
i loxAfr3.scaffold_20          I 1602 C 0
s triMan1.JH594629               9978020 409 +  24341844 TCACAATGAAATTT--AAA----aaacgcattcttggcag-----agggaattgctaacacaaaggccctgaggcaggagtgtgtctggcaggttcaaagaacTGTT-TCTGCATTCTTTCTAAAGGCGGCTTATCTGAAAGAATGGTCAACCAGGCAGAAA-TCTTTCTGGAGAAGAGACGATGCTAGGTAAAATAGCCTGGAGGTGCAAATCACTA--------AGTggcacagggccaggtgccttacctaaatgatctcatttaatcct--caactaccctgagaagtaggggt-tgttattctcattttacagacatagaaacaaaggcttgaagaggttaagtcacccactctgccccaaaatgacacaactaagaagcagcagagttgggctgagaagtctgaagccagagctcttcttatc--attt
i triMan1.JH594629             C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e ornAna1.Contig53964                668   0 -      2070 I
e tetNig2.chr10                  6379385   0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382   0 -   6649201 I
e hapBur1.JH425491                252157   0 -   1273513 I
e neoBri1.JH422308               3491820   0 -   5414369 I
e araMac1.AOUJ01470298               637   0 -       895 I
e takFla1.AOOT01113665               306   0 +       323 I
e fr3.HE591725                    289786   0 -    411779 I
e ficAlb2.chr2                 148476508   0 + 157563209 I
e anoCar2.chr1                 148577473   4 + 263920458 I
e pseHum1.KB221220               3809684   0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214   0 -  25666195 I
e allMis1.JH737491                498705 1755 -    628740 I
e falPer1.KB390952               2753956   0 -  18327016 I
e falChe1.KB397350               1707310   0 -   3649919 I
e macEug2.GL109592                105897   0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802   0 +   2102797 I
e sarHar1.chr1_GL834688_random    533615 5587 +   3395230 I
e melGal1.chr7                  34310641   0 -  38723565 I
e anaPla1.KB742696               1254472   0 -   1270250 I
e amaVit1.AOCU01222764              1324   0 -      1397 I
e apaSpi1.KB929605                579960   0 +   1015623 I
e cheMyd1.KB605988                134509   0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736   1 +    779542 I
e pelSin1.JH207189               1424965   0 +   1874153 I
e melUnd1.JH556573                751858   2 +  10614383 I
e monDom5.chr1                 530538996 3149 + 748055161 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e dasNov3.JH567436               1041536 7496 -   2788317 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=41138.000000
s hg38.chr8_KI270814v1_alt         90688 9 +    141812 CATTATTAA
s ponAbe2.chr8                  59060211 9 + 153482349 CATTATTAA
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99351944 9 + 108792865 cactattaa
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24018525 9 +  27210278 CACTATTAA
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21198160 9 -  23169006 CCCTATGAA
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19220735 9 -  22931326 CGCTGCCAG
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2814737 9 -   6207710 CGCTGCCAG
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10850769 9 +  17242564 CACTGCCAT
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84044902 9 +  91571448 TACTACCAG
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6825974 9 -  14545593 CACTACCAG
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134117072 9 + 140925898 CGCTCCCAG
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57849242 9 -  64289059 TGCTGCCAG
i canFam3.chr17                C 0 C 0
s odoRosDiv1.KB229025            3043844 9 +   4816872 CGCTGCCAG
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19419312 9 -  23789964 CACCACCAG
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27631944 9 -  46401353 CGTTATTGA
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9978429 9 +  24341844 cactaTTGA
i triMan1.JH594629             C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e musFur1.GL896914              13621116 6 -  19722643 I
e ornAna1.Contig53964                668 0 -      2070 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221220               3809684 0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH737491                498705 1755 -    628740 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e sarHar1.chr1_GL834688_random    533615 5587 +   3395230 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929605                579960 0 +   1015623 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736 1 +    779542 I
e pelSin1.JH207189               1424965 0 +   1874153 I
e melUnd1.JH556573                751858 2 +  10614383 I
e monDom5.chr1                 530538996 3149 + 748055161 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e dasNov3.JH567436               1041536 7496 -   2788317 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=10222.000000
s hg38.chr8_KI270814v1_alt         90697 16 +    141812 AGATGGTTGGACTTAA
s ponAbe2.chr8                  59060220 16 + 153482349 AGATGGTGGGACTTAA
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99351953 16 + 108792865 AAACAGCTGGACTTAA
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24018534 16 +  27210278 AAACAGCTGGGCTTAA
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21198169  3 -  23169006 AGA-------------
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19220744 16 -  22931326 AGATGACTGGCCTTAA
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2814746 16 -   6207710 AGACGACTGGCCTTAA
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10850778 16 +  17242564 AGGCAACCGGCCTCCA
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84044911 15 +  91571448 -GATGGCTGACCTTAG
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6825983 16 -  14545593 AGACGGCTGAACTTCG
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134117081  5 + 140925898 AGACA-----------
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57849251  9 -  64289059 AGAAGG----ACT---
i canFam3.chr17                C 0 I 3
s odoRosDiv1.KB229025            3043853 12 +   4816872 AGACGG----ACTCAA
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19419321 16 -  23789964 AGGGGACTGGGCTAAG
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27631953 14 -  46401353 ACATGACTGAACTT--
i loxAfr3.scaffold_20          C 0 I 3
s triMan1.JH594629               9978438 14 +  24341844 ACATGATTGAACTT--
i triMan1.JH594629             C 0 I 3
s sarHar1.chr1_GL834688_random    539202 16 +   3395230 AGATTACTGTAATCAA
i sarHar1.chr1_GL834688_random I 5587 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e musFur1.GL896914              13621116  6 -  19722643 I
e ornAna1.Contig53964                668  0 -      2070 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221220               3809684  0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH737491                498705 1755 -    628740 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530538996 3149 + 748055161 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e dasNov3.JH567436               1041536 7496 -   2788317 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=7847.000000
s hg38.chr8_KI270814v1_alt         90713 1 +    141812 A
s ponAbe2.chr8                  59060236 1 + 153482349 A
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99351969 1 + 108792865 A
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24018550 1 +  27210278 A
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19220760 1 -  22931326 A
i vicPac2.KB632437             C 0 I 8
s camFer1.KB017763               2814762 1 -   6207710 A
i camFer1.KB017763             C 0 I 8
s orcOrc1.KB316907              10850794 1 +  17242564 G
i orcOrc1.KB316907             C 0 I 1
s equCab2.chr15                 84044926 1 +  91571448 A
i equCab2.chr15                C 0 I 1
s cerSim1.JH767782               6825999 1 -  14545593 A
i cerSim1.JH767782             C 0 I 1
s odoRosDiv1.KB229025            3043865 1 +   4816872 A
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19419337 1 -  23789964 A
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27631970 1 -  46401353 A
i loxAfr3.scaffold_20          I 3 C 0
s triMan1.JH594629               9978455 1 +  24341844 A
i triMan1.JH594629             I 3 C 0
s dasNov3.JH567436               1049032 1 -   2788317 A
i dasNov3.JH567436             I 7496 C 0
s sarHar1.chr1_GL834688_random    539218 1 +   3395230 A
i sarHar1.chr1_GL834688_random C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e musFur1.GL896914              13621116 6 -  19722643 I
e canFam3.chr17                 57849260 3 -  64289059 I
e felCat8.chrA3                134117086 0 + 140925898 C
e ornAna1.Contig53964                668 0 -      2070 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221220               3809684 0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH737491                498705 1755 -    628740 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929605                579960 0 +   1015623 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736 1 +    779542 I
e pelSin1.JH207189               1424965 0 +   1874153 I
e melUnd1.JH556573                751858 2 +  10614383 I
e monDom5.chr1                 530538996 3149 + 748055161 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21198172 0 -  23169006 C
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=1116.000000
s hg38.chr8_KI270814v1_alt         90714 4 +    141812 AAGA
s ponAbe2.chr8                  59060237 4 + 153482349 AAGA
i ponAbe2.chr8                 C 0 C 0
s monDom5.chr1                 530542145 4 + 748055161 AAAA
i monDom5.chr1                 I 3149 C 0
s sarHar1.chr1_GL834688_random    539219 3 +   3395230 -AGG
i sarHar1.chr1_GL834688_random C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e musFur1.GL896914              13621116 6 -  19722643 I
e vicPac2.KB632437              19220761 8 -  22931326 I
e camFer1.KB017763               2814763 8 -   6207710 I
e odoRosDiv1.KB229025            3043866 0 +   4816872 C
e canFam3.chr17                 57849260 3 -  64289059 I
e felCat8.chrA3                134117086 0 + 140925898 C
e ornAna1.Contig53964                668 0 -      2070 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221220               3809684 0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH737491                498705 1755 -    628740 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929605                579960 0 +   1015623 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736 1 +    779542 I
e pelSin1.JH207189               1424965 0 +   1874153 I
e calJac3.chr14                 99351970 0 + 108792865 C
e melUnd1.JH556573                751858 2 +  10614383 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e dasNov3.JH567436               1049033 0 -   2788317 C
e equCab2.chr15                 84044927 1 +  91571448 I
e triMan1.JH594629               9978456 0 +  24341844 C
e loxAfr3.scaffold_20           27631971 0 -  46401353 C
e pteAle1.KB030580              19419338 0 -  23789964 C
e cerSim1.JH767782               6826000 1 -  14545593 I
e orcOrc1.KB316907              10850795 1 +  17242564 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21198172 0 -  23169006 C
e saiBol1.JH378126              24018551 0 +  27210278 C
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-73610.000000
s hg38.chr8_KI270814v1_alt         90718 169 +    141812 GCCTTCTGCCTTCACAGG-GCAAGATGGCTTA--CA---------------------TTTC--CCA-TGAGGTCAGATC-AGGATAAGCTG--GGGCTGGGTACCTGCTGCCGTCCCAAGTGCTATCTCCATC-AAAAAG--------TCCTATT--------CTCTTTACACAAAGTAGTTC-ATCAGATATGTATGAG-------GGA--GCTTT-AAACAGGCA-------------
s ponAbe2.chr8                  59060241 169 + 153482349 GCCTTCTGCCTTCACAGG-GAAAGATGGCTTA--CA---------------------TTTC--CCA-TGAGGTCAGATC-AGGATAAGCTG--GAGCTGGGTACCTGCTGCCATCCCAAGTGCTGTCTCCATC-AAAAAA--------TCCTACT--------ACCTTTACACAAAGTAGTTC-AGCAGATATGTATGAG-------GGA--GCTTT-AAACAGGCA-------------
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99351970 168 + 108792865 --CTCCTGCTGTCACAGG-GCAAGATGGTTTA--CA---------------------CCTG--CC----AGGCCAGGCT-AAGCTAAGCTG--GGGCTGGGCACCTGCTGCCATCCCAGGTGCTATCTCCATC-AAAAAG--------CCCTCCTG----TTACCTTTTACACAGAGTGGCCC-ATCAGGTATGTACAAG-------GGG--ACTCT-AAACGGGAA-------------
i calJac3.chr14                C 0 I 414
s saiBol1.JH378126              24018551 174 +  27210278 --CTCCTGCTGTCACAGG-GCAAGATGGGTTA--TA---------------------CCTG--CC----AGGCCAGGCT-AAGCTAAGCTG--GGGCTGGGCACCTGCTGCCATCCCAGGTGCTATCACCATC-AAAAAG--------CCCTCCTG----TTATCTTTTACACAGA-TAGCCC-ATCAGGTATGTACAAGGGGACAAGGG--ACTCT-AAACAGGAA-------------
i saiBol1.JH378126             C 0 I 416
s otoGar3.GL873541              21198172 161 -  23169006 GTCTTCTGCCCTCCTGTG-GGCAAATGGCTCA--CA---------------------TCTG--ACA-TGGCGTCAGGCC-AG----AAGGG--GGACTGAGGACTTGGTGCCA--CCTAGGGCT-----CATC--AAAGG--------TCCTTCTA----GCTCCTTTTACACAAAGCAGCCC-ATCAGACACACAGGAG-------GGA--ACTTA-GGGAAGGAA-------------
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19220769 137 -  22931326 -------GCGGTCA------------GTCCTA--CA---------------------CCTGC-CCC-CCTGGTCGGAGC-AAGACAGGT---------------------CCCCCCCAGGTGCCATCTGTGTCAGGAATT--------TCCTTCTA-----TTCCCACCACACAAAGCAGTTC-GTCAGAGACGTACGAG-------GAA--AGTTT-ACAAAGGGA-------------
i vicPac2.KB632437             I 8 C 0
s camFer1.KB017763               2814771 138 -   6207710 -------GTGGTCA------------GTCATA--CA---------------------CCCGCACCC-CCTAGTCGGAGC-AAGGCAGGT---------------------CTCCCCCAGATGCTGTCTGCGTCAAGAATT--------TCCTTCTA-----TTCCCGCCACACAAAGCAGTTC-GTCAGAGACGTATGAG-------GAA--ACTTT-ACAAAGGGA-------------
i camFer1.KB017763             I 8 C 0
s orcOrc1.KB316907              10850796 105 +  17242564 -------GCGGTCA------------GTGCTACTCA---------------------CACGTGACC-CACGGCCGGAGC-GGGGCAGGC------------------------------------TGTGAGACCGGAGGT--------ACCATCTA---------CACCA-------------------GGACGTACAGG-------GAAACACTTT-GCAAAGGAA-------------
i orcOrc1.KB316907             I 1 C 0
s equCab2.chr15                 84044928 151 +  91571448 ----------TTCA------------GTCTCA--CA---------------------CTTG--ACA-CAAGACCAGAGC-CGGATAAGCTG--AGACTGAATACACGCTGCCCTCCCAAGTGCCGTCCACGTC-AGAACT--------TCCTTCTA-----TCCCTGTTATACAGAGCAGTTT-GTCAGATGCGTGTGAG-------GAA--GCTTC-ACAAAGGAA-------------
i equCab2.chr15                I 1 C 0
s cerSim1.JH767782               6826001 151 -  14545593 ----------TTCA------------GCCTCA--CA---------------------CCTG--ACA-CAAGATCAGAAC-TGGATAAGCTGCCAGACTGCATACACACTCCCCTCCCAGGTGCCGTCCACACC-AGAATT--------CCCTTCTA-----TTCCCGTTACACACAGCAGTTC-GTCAGATAC--GTGAG-------GAA--CCTTT-ACAAAGGAA-------------
i cerSim1.JH767782             I 1 C 0
s felCat8.chrA3                134117086 116 + 140925898 ------------GC------------CTCATA--CA---------------------CATG--ACC-CGAGAGCAGAGC-AGGAGAAGTTGGGACACTGAGCACGGGCTTCTCTCTGAGGGGCCGTCTCCGTC-AGAACT--------TCCCTCTG---GTTCCTTGATACACA------------------------------------------------AGGGG-------------
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57849263 119 -  64289059 -------------------------------A--CA---------------------CACA--CCC-CGAGACCAG-GC-AGGAGGAGCCGGGAGGCAGAACACAGGCTTCCCTCTGAGGGGCCGCTGATGTC-ACAGTT--------CCCTTCTA---GTCCCTTGTTGAGCA-AGCAGTTG-GTC-----------------------------------AGGAG-------------
i canFam3.chr17                I 3 C 0
s musFur1.GL896914              13621122 140 -  19722643 -------------------------------g--catttCGCTGCCAGAGACAGATTCATC--CCC-CAAGACCAGAGC-AGGAGGAGCTGGGAGGCTGAATACGCGC-TCCCTCCGAGCAGCCACCTACATC-GGAGCT--------CCCTTCTG---GTTCCTTGTTACACA-AGCGGTTC-AAC-----------------------------------AGGAG-------------
i musFur1.GL896914             I 6 C 0
s odoRosDiv1.KB229025            3043866 117 +   4816872 ---------------------------------------------------------CACG--CCC-CAAGACCGGAGC-AGAAGGAGCTGGGAGGCTGAATAGAGGCTTCCCTCTGAGGAGCCGCCTACGTC-AGAGTT--------GCCTTCTA---GTTCCTTGTTGCACA-AGCGGTTC-ATC-----------------------------------AGGAG-------------
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19419338 150 -  23789964 ---------GTTCA------------GTCTCC--CA---------------------C---------CCAGATGAGGGC-AGGAGGAGCTGTGGGTCCGATCCTGC---TTCCCCCGAGGGGCCATCCACATC-GGAACG--------TCCTGCTGTTTGTTCCCCGATACACAGAGTACTTC-GTCACACGGTGACAAG-------GAA--ACTTT-CCGCAGGAA-------------
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27631971 176 -  46401353 GTCTTTTACCCTCCTGGG-GAA-GATGGCTGA--CG---------------------TCTG--ACACAAGGATCAGACC-AGGATAAATGGTGAGACTGAGTAAATGCTTCCATCTGAGGTGTCGTCTACATC-AAAATT--------TCCTTCTA---TTCCCCAGTTACACAAAGCGGTCA-GCCTGATACGTACGTG-------GAA--GCTTC-AAAAAGGAA-------------
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9978456 176 +  24341844 GTCTTTTACCCTCCTGGG-GAA-GATGGCTGA--CA---------------------TCTG--ACACGAGGATCAGACC-AGGATAAATGATGGGATTGAGTAAATGCTTCCATCTAAGGTGCCATCTACATC-AAAATT--------TCCTTCTA---TTTTCCAGTCACACAAAGCAGTCA-GTCTGATATATATGTG-------GAA--AGTTT-AAAAAGGAA-------------
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1049033 172 -   2788317 GTATTTCACCCCCATGGG-GGATGATGGCTTA--CA---------------------TCTG--ATA-AAAGATCAGATC-AGGATAAATTGTGAGACTGAATAATTGCTTCCATCGGAAGTGCTGTATACATC-AAAATT--------TCCTTCTA---TTCCCCTTTTACACCAAGCAATCA-----GATATGCACGAG-------GAA--ACTTT-ACAAAGAAA-------------
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530542149 178 + 748055161 TCCTTTTGCCATCAAAGATGGAAGATAGTTTC--CA---------------------TTTG--AAG-AAGGAATTGATT------------TTACACTGAACTAATGCCCCCACCTAAACTTTTGTTACTATC-CAAGTTG-------CTGTTCTC---TCCTTTTCTTGAACAAAGCAGGCTGGTCAGATTTTCA-----------GAG--AATTTAAAAAATGAAAAGAAAACAGGTC
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    539222 196 +   3395230 TCCTTTTGTCCTCCTAGGAGGAAGATGGTCTC--CA---------------------TCTA--AAG-AAGGAATTGGTTCATCCTAAGTGGTAACACGGAACTAATGCTTCCATTTAACTTTATGTTATCATT-CAAGTTatcatttccccttccc---cccttttcttgcACAGAGCAGTCTGGGCAGATTTTCa-----------ggg--aattt-aaaaatgaaataaaaacaggcC
i sarHar1.chr1_GL834688_random C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e ornAna1.Contig53964                668   0 -      2070 I
e tetNig2.chr10                  6379385   0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382   0 -   6649201 I
e hapBur1.JH425491                252157   0 -   1273513 I
e neoBri1.JH422308               3491820   0 -   5414369 I
e araMac1.AOUJ01470298               637   0 -       895 I
e takFla1.AOOT01113665               306   0 +       323 I
e fr3.HE591725                    289786   0 -    411779 I
e ficAlb2.chr2                 148476508   0 + 157563209 I
e anoCar2.chr1                 148577473   4 + 263920458 I
e pseHum1.KB221220               3809684   0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214   0 -  25666195 I
e allMis1.JH737491                498705 1755 -    628740 I
e falPer1.KB390952               2753956   0 -  18327016 I
e falChe1.KB397350               1707310   0 -   3649919 I
e macEug2.GL109592                105897   0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802   0 +   2102797 I
e melGal1.chr7                  34310641   0 -  38723565 I
e anaPla1.KB742696               1254472   0 -   1270250 I
e amaVit1.AOCU01222764              1324   0 -      1397 I
e apaSpi1.KB929605                579960   0 +   1015623 I
e cheMyd1.KB605988                134509   0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736   1 +    779542 I
e pelSin1.JH207189               1424965   0 +   1874153 I
e melUnd1.JH556573                751858   2 +  10614383 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=198919.000000
s hg38.chr8_KI270814v1_alt         90887 46 +    141812 AACCATCACGGCCACTTTCATTTTTGGTGT-AAGTGAAGAGACTTCC
s ponAbe2.chr8                  59060410 46 + 153482349 AACCATCATGGCCACTTTCATTTTTGGTGT-AAGTGAAGAGACTTCC
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99352552 46 + 108792865 aATCATCTAGGCCACTTTCATTTTTGGTGT-AAATGAACAGATTTCC
i calJac3.chr14                I 414 C 0
s saiBol1.JH378126              24019141 46 +  27210278 aATCATCTAGGCCACTTTCATTTTTGGTGT-AAGTGAACAGATTTCC
i saiBol1.JH378126             I 416 C 0
s otoGar3.GL873541              21198333 46 -  23169006 AACGACCTCTGCTACTTTCACTTTCAGTTT-AAGTAGAGAGACTTCC
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19220906 34 -  22931326 AACCATCTAGGTCAC-TTCACTCTCGGT------------GACTTCT
i vicPac2.KB632437             C 0 I 2
s camFer1.KB017763               2814909 34 -   6207710 AACCATCTAGGTCAC-TTCACTCTTGGT------------GACTTCT
i camFer1.KB017763             C 0 I 2
s orcOrc1.KB316907              10850901 35 +  17242564 AACCATCTAGCTCACTTTCATTTTTAGC------------GAGTTCT
i orcOrc1.KB316907             C 0 I 3
s equCab2.chr15                 84045079 45 +  91571448 GACCGTCTA-GTTACTTTCTTTTTTGGTGT-AAGAGAAGAGACTTCT
i equCab2.chr15                C 0 I 3
s cerSim1.JH767782               6826152 45 -  14545593 AACCATCCA-GTCGCTTTCTTTTTTGGTGT-AAGTGAAGAGACTTCT
i cerSim1.JH767782             C 0 I 3
s felCat8.chrA3                134117202 44 + 140925898 AACCAT-CAGGTCACTTT-GCTTTTGGCGT-CAGTGAAGAGACTTCG
i felCat8.chrA3                C 0 I 7
s canFam3.chr17                 57849382 46 -  64289059 AGCTACCCAGGTCACTGAGGCTTTCAGGGT-CTATGAAGAGGCTCTG
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13621262 46 -  19722643 AACCATCCAGGTCACTTTCGCTTCTGGGGT-CAGTGCAGAGACTTCT
i musFur1.GL896914             C 0 I 287
s odoRosDiv1.KB229025            3043983 46 +   4816872 AACCATCCAGGTCACTTTCGCTCCTGGGAT-CTGTGAAGAGACTTCT
i odoRosDiv1.KB229025          C 0 I 7
s pteAle1.KB030580              19419488 37 -  23789964 ACTCATCGAGGTCACACGGATTCTGGGTgt-----gaagtga-----
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27632147 47 -  46401353 AACCACCTCTGTTACTTTCATTTCTGGTGTTAAGTGAAGAGACTTTT
i loxAfr3.scaffold_20          C 0 I 3
s triMan1.JH594629               9978632 46 +  24341844 AACTACCTC-GTCACTTTCATTTTTGGTGTTAAGTGAAGAGACGTTT
i triMan1.JH594629             C 0 I 3
s dasNov3.JH567436               1049205 43 -   2788317 AACAATCTAGGTCACTTTCATTTTTGG----AAGGGAAAAGACTTCT
i dasNov3.JH567436             C 0 I 3
s monDom5.chr1                 530542327 44 + 748055161 -AGTGTTTG-TACATTCTTCTCTGCAATAT-ATGAGAAGAAACCTTT
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    539418 44 +   3395230 -AGTGTTTG-TACATTCTTATCTTCAGTAT-GTAAAAAGAGACCTTT
i sarHar1.chr1_GL834688_random C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e ornAna1.Contig53964                668  0 -      2070 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221220               3809684  0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH737491                498705 1755 -    628740 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-73255.000000
s hg38.chr8_KI270814v1_alt         90933 35 +    141812 CCTGGGCT---------ATAGACAGTGTGGCCTTAAAGTCTAGT
s ponAbe2.chr8                  59060456 35 + 153482349 CCTGGGCT---------ATAGACAGTGTTGCCTTAAAGTCTAGc
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99352598 31 + 108792865 CCTGGGCC-------------ACAGCATTGCCTTGAAGTCTATc
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24019187 31 +  27210278 CCTGGGCC-------------ACAGTATTGCCTTGAAGGCTATc
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21198379 33 -  23169006 CCTAGGCT-----------AGTCAGCATCCTCTTCAAGTCTTTG
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19220942 33 -  22931326 CAGGGGCT---------GGTGACAGCAC-GCC-TAAGGTCTACG
i vicPac2.KB632437             I 2 C 0
s camFer1.KB017763               2814945 33 -   6207710 CAGGGGCT---------GGTGACAGCAC-GCC-CAAGGTCTAAG
i camFer1.KB017763             I 2 C 0
s orcOrc1.KB316907              10850939 33 +  17242564 CGGGGGCC---------GGCGACAACAC-TGC-CAAGGCCCACG
i orcOrc1.KB316907             I 3 C 0
s equCab2.chr15                 84045127 32 +  91571448 CCGGAGC-----------ATGACAGCCCTGCC-TAAGGTCTACT
i equCab2.chr15                I 3 C 0
s cerSim1.JH767782               6826200 34 -  14545593 CTGGGGCT---------AGTGACAGCACTGCG-TAAGGTCTACC
i cerSim1.JH767782             I 3 C 0
s felCat8.chrA3                134117253 19 + 140925898 CCG------------------------CCAGC-AGGGGTCTCCC
i felCat8.chrA3                I 7 C 0
s canFam3.chr17                 57849428 16 -  64289059 ---------------------------CTGGC-TGGGGTTGACA
i canFam3.chr17                C 0 C 0
s odoRosDiv1.KB229025            3044036 29 +   4816872 CTGG--------------GCGACAGTGCTGGC-TGGGGTCTACC
i odoRosDiv1.KB229025          I 7 C 0
s pteAle1.KB030580              19419525 13 -  23789964 ------------------------gggtgaag-tgagg------
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27632197 35 -  46401353 CAGGGACT---------ACTGACAATACTGTCTTATAGTCTACT
i loxAfr3.scaffold_20          I 3 C 0
s triMan1.JH594629               9978681 35 +  24341844 CAGAGACT---------TCCGACAGTACCGTCTTATAGTCTACT
i triMan1.JH594629             I 3 C 0
s dasNov3.JH567436               1049251 35 -   2788317 CCCGGGCT---------AAGGACAGAACTGCCTTCAAGTCTACT
i dasNov3.JH567436             I 3 C 0
s monDom5.chr1                 530542371 17 + 748055161 ------TTTTGTATGTGTGTGAC---------------------
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    539462  8 +   3395230 ------TT---------TGTGAC---------------------
i sarHar1.chr1_GL834688_random C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e musFur1.GL896914              13621308 287 -  19722643 I
e ornAna1.Contig53964                668  0 -      2070 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221220               3809684  0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH737491                498705 1755 -    628740 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-27098.000000
s hg38.chr8_KI270814v1_alt         90968 4 +    141812 AC-AC--
s ponAbe2.chr8                  59060491 4 + 153482349 ac-ac--
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99352629 4 + 108792865 at-ac--
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24019218 4 +  27210278 at-ac--
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21198412 5 -  23169006 GTGGC--
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19220975 4 -  22931326 GC-GT--
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2814978 4 -   6207710 GC-AT--
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10850972 4 +  17242564 GC-GT--
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84045159 4 +  91571448 GC-AC--
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6826234 4 -  14545593 GT-GC--
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134117272 4 + 140925898 GT-GC--
i felCat8.chrA3                C 0 I 7
s canFam3.chr17                 57849444 1 -  64289059 G------
i canFam3.chr17                C 0 C 0
s odoRosDiv1.KB229025            3044065 2 +   4816872 GT-----
i odoRosDiv1.KB229025          C 0 C 0
s loxAfr3.scaffold_20           27632232 4 -  46401353 GA-ac--
i loxAfr3.scaffold_20          C 0 I 2
s triMan1.JH594629               9978716 4 +  24341844 ac-ac--
i triMan1.JH594629             C 0 I 2
s dasNov3.JH567436               1049286 3 -   2788317 AA-A---
i dasNov3.JH567436             C 0 C 0
s xenTro7.KB021656              10784371 4 + 142678541 ---ACTC
i xenTro7.KB021656             N 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e musFur1.GL896914              13621308 287 -  19722643 I
e ornAna1.Contig53964                668 0 -      2070 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221220               3809684 0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH737491                498705 1755 -    628740 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e sarHar1.chr1_GL834688_random    539470 0 +   3395230 C
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929605                579960 0 +   1015623 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736 1 +    779542 I
e pelSin1.JH207189               1424965 0 +   1874153 I
e melUnd1.JH556573                751858 2 +  10614383 I
e monDom5.chr1                 530542388 0 + 748055161 C
e taeGut2.chr18                  2064101 602 -  11201131 I
e pteAle1.KB030580              19419538 0 -  23789964 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-67497.000000
s hg38.chr8_KI270814v1_alt         90972  56 +    141812 ACATGTAAACACATGCACATGAAAACA-------------------------------------------------------------CTTTCACACATGCATacatgcacatgaac------
s ponAbe2.chr8                  59060495  56 + 153482349 acacgtaaacacatgcacatgaaaacg-------------------------------------------------------------ccttcacacatgcatacatgcacatggac------
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99352633  40 + 108792865 acacatgcctgaatacatgtgta-------------------------------------------------------------------tccacacag----------acaagcac------
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24019222  40 +  27210278 acacatgcatgcatacatgtgta-------------------------------------------------------------------tccacacag----------acaagcac------
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21198417  23 -  23169006 ATGTGTAAGTGTCTGCATGTG----------------------------------------------------------------------------------------------AC------
i otoGar3.GL873541             C 0 C 0
s orcOrc1.KB316907              10850976   2 +  17242564 -------------------------------------------------------------------------------------------------------------------GC------
i orcOrc1.KB316907             C 0 C 0
s loxAfr3.scaffold_20           27632238 111 -  46401353 acacatacacacacacacacatactcacaTG------GTCCTGCTTACTCTCACAAACACACACATACTGTCctaactcactcactctctctcacacacacacacacacactctcac------
i loxAfr3.scaffold_20          I 2 I 40
s triMan1.JH594629               9978722 104 +  24341844 acacacacacacacacacacacacacacacacacacTGTCCTGCTTActctc-------------tctccctctctctctctctctctctctcacacacacacacacacacacacac------
i triMan1.JH594629             I 2 I 189
s monDom5.chr1                 530542388  33 + 748055161 ------------------------------------------------------------------------------------ATAGCCACTCCTCAGGAGACTACTGAAACACAC------
i monDom5.chr1                 C 0 I 16
s sarHar1.chr1_GL834688_random    539470  33 +   3395230 ------------------------------------------------------------------------------------ATAGTCACTGCTCAGGAAACtaatataaaacac------
i sarHar1.chr1_GL834688_random C 0 I 2
s xenTro7.KB021656              10784375  56 + 142678541 ACATACAGACCCATACTGACCTA-------------------------------------------------------------------TCCACTCACATACAGACCCACACTGACATATCT
i xenTro7.KB021656             C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e musFur1.GL896914              13621308 287 -  19722643 I
e vicPac2.KB632437              19220979   0 -  22931326 C
e camFer1.KB017763               2814982   0 -   6207710 C
e odoRosDiv1.KB229025            3044067   0 +   4816872 C
e canFam3.chr17                 57849445   0 -  64289059 C
e felCat8.chrA3                134117276   7 + 140925898 I
e ornAna1.Contig53964                668   0 -      2070 I
e tetNig2.chr10                  6379385   0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382   0 -   6649201 I
e hapBur1.JH425491                252157   0 -   1273513 I
e neoBri1.JH422308               3491820   0 -   5414369 I
e araMac1.AOUJ01470298               637   0 -       895 I
e takFla1.AOOT01113665               306   0 +       323 I
e fr3.HE591725                    289786   0 -    411779 I
e ficAlb2.chr2                 148476508   0 + 157563209 I
e anoCar2.chr1                 148577473   4 + 263920458 I
e pseHum1.KB221220               3809684   0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214   0 -  25666195 I
e allMis1.JH737491                498705 1755 -    628740 I
e falPer1.KB390952               2753956   0 -  18327016 I
e falChe1.KB397350               1707310   0 -   3649919 I
e macEug2.GL109592                105897   0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802   0 +   2102797 I
e melGal1.chr7                  34310641   0 -  38723565 I
e anaPla1.KB742696               1254472   0 -   1270250 I
e amaVit1.AOCU01222764              1324   0 -      1397 I
e apaSpi1.KB929605                579960   0 +   1015623 I
e cheMyd1.KB605988                134509   0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736   1 +    779542 I
e pelSin1.JH207189               1424965   0 +   1874153 I
e melUnd1.JH556573                751858   2 +  10614383 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e dasNov3.JH567436               1049289   0 -   2788317 C
e equCab2.chr15                 84045163   0 +  91571448 C
e pteAle1.KB030580              19419538   0 -  23789964 C
e cerSim1.JH767782               6826238   0 -  14545593 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-93252.000000
s hg38.chr8_KI270814v1_alt         91028 39 +    141812 ----atgcatgcaca----tgcatacatgcacatgaacatgcatgca
s ponAbe2.chr8                  59060551 13 + 153482349 ----atgcatgcaca------ca------------------------
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99352673 13 + 108792865 ----acgtatgcaca------cg------------------------
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24019262 13 +  27210278 ----atgtatgcaca------cg------------------------
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21198440 11 -  23169006 ----ACGCAGTCCCA--------------------------------
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19220979  9 -  22931326 ------GCACACACA--------------------------------
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2814982  9 -   6207710 ------GCACACACA--------------------------------
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10850978 11 +  17242564 ----GCGCACACACA--------------------------------
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84045163  9 +  91571448 ------GCACGTGCG--------------------------------
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6826238  9 -  14545593 ------GCACACGTG--------------------------------
i cerSim1.JH767782             C 0 C 0
s canFam3.chr17                 57849445  6 -  64289059 ---------CCTGCA--------------------------------
i canFam3.chr17                C 0 C 0
s odoRosDiv1.KB229025            3044067  6 +   4816872 ---------CCCGCA--------------------------------
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19419538  7 -  23789964 --------gtgCACG--------------------------------
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27632389 11 -  46401353 ----ttgcacacaca--------------------------------
i loxAfr3.scaffold_20          I 40 C 0
s triMan1.JH594629               9979015 27 +  24341844 ----acacacacaca------cactctctctctccct----------
i triMan1.JH594629             I 189 C 0
s dasNov3.JH567436               1049289 11 -   2788317 ----ATACATGTGTG--------------------------------
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530542437 33 + 748055161 ----ATCCACACTCATTCCTACAAAAAGAGCCATCAC----------
i monDom5.chr1                 I 16 C 0
s sarHar1.chr1_GL834688_random    539505 33 +   3395230 ----acacacgtacgtTCCTACAAAAAGAGCCATCAC----------
i sarHar1.chr1_GL834688_random I 2 C 0
s xenTro7.KB021656              10784431 37 + 142678541 ATCCACTCACATACAGACCCACACTGACCTATCTATC----------
i xenTro7.KB021656             C 0 C 0
e gasAcu1.chrXV                  6165465 1834 +  16198764 I
e musFur1.GL896914              13621308 287 -  19722643 I
e felCat8.chrA3                134117276  7 + 140925898 I
e ornAna1.Contig53964                668  0 -      2070 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221220               3809684  0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH737491                498705 1755 -    628740 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-30250.000000
s hg38.chr8_KI270814v1_alt         91067 14 +    141812 --catgcatgcacaCA
s ponAbe2.chr8                  59060564 10 + 153482349 ------catgcacaca
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99352686  8 + 108792865 ------catgcaca--
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24019275 10 +  27210278 ------catgcacatg
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21198451  8 -  23169006 ------CCTGAGCA--
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19220988  2 -  22931326 ------CA--------
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2814991  2 -   6207710 ------CA--------
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10850989  2 +  17242564 ------CA--------
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84045172  8 +  91571448 ------CGTGCACA--
i equCab2.chr15                C 0 I 2
s cerSim1.JH767782               6826247  8 -  14545593 ------CCCGCACA--
i cerSim1.JH767782             C 0 I 2
s canFam3.chr17                 57849451  8 -  64289059 ------CTGGCCCG--
i canFam3.chr17                C 0 I 1
s odoRosDiv1.KB229025            3044073  8 +   4816872 ------CCCACCCC--
i odoRosDiv1.KB229025          C 0 I 15
s pteAle1.KB030580              19419545  7 -  23789964 ------CGGGCCC---
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27632400  8 -  46401353 ------cacacaca--
i loxAfr3.scaffold_20          C 0 I 102
s triMan1.JH594629               9979042  8 +  24341844 ------cacacaca--
i triMan1.JH594629             C 0 I 98
s dasNov3.JH567436               1049300  8 -   2788317 ------CACACCAA--
i dasNov3.JH567436             C 0 I 24
s monDom5.chr1                 530542470  8 + 748055161 ------CAAGCAGA--
i monDom5.chr1                 C 0 I 10
s sarHar1.chr1_GL834688_random    539538  8 +   3395230 ------CAAGCAGA--
i sarHar1.chr1_GL834688_random C 0 I 10
s xenTro7.KB021656              10784468  8 + 142678541 ------CACTCACA--
i xenTro7.KB021656             C 0 I 2
s gasAcu1.chrXV                  6167299 14 +  16198764 CCTGCGCGCACACA--
i gasAcu1.chrXV                I 1834 C 0
e musFur1.GL896914              13621308 287 -  19722643 I
e felCat8.chrA3                134117276  7 + 140925898 I
e ornAna1.Contig53964                668  0 -      2070 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221220               3809684  0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH737491                498705 1755 -    628740 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-77209.000000
s hg38.chr8_KI270814v1_alt         91081 30 +    141812 CGAA----------CACACAC--ACTCCTGCCTATGCACTCT-------
s ponAbe2.chr8                  59060574 30 + 153482349 tgaa----------cacacac--acTCCTGCCTATGCACTCT-------
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99352694 12 + 108792865 ------------------------------catctacactct-------
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24019285 14 +  27210278 c----------------------------tcgtctacactct-------
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21198459  2 -  23169006 ----------------------------------------CT-------
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19220990 18 -  22931326 ------------------------CGGCCTTGCTCACTGCCT-------
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2814993 18 -   6207710 ------------------------CGGCCTTGCTCACTGCCT-------
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10850991 12 +  17242564 ------------------------CGGTCTTGCT------CT-------
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84045182 20 +  91571448 ----------------CCCAC------TCTCTCTCACACCCT-------
i equCab2.chr15                I 2 C 0
s cerSim1.JH767782               6826257 24 -  14545593 ----------------CACAC--GCAGCCTCCCTCACACCCT-------
i cerSim1.JH767782             I 2 C 0
s loxAfr3.scaffold_20           27632510 42 -  46401353 CGCACTTTCCCTCTCACACACGGTCCTCCTTACTCACTCTCA-------
i loxAfr3.scaffold_20          I 102 C 0
s triMan1.JH594629               9979148 22 +  24341844 caca----------cacacac----------acacacTCTCA-------
i triMan1.JH594629             I 98 C 0
s xenTro7.KB021656              10784478 30 + 142678541 ----------CAGACCCACACTGACCTATCTATCCACTCT---------
i xenTro7.KB021656             I 2 C 0
s gasAcu1.chrXV                  6167313 25 +  16198764 ------------------------CAAACACACAAACACACGGCAGGTT
i gasAcu1.chrXV                C 0 C 0
e musFur1.GL896914              13621308 287 -  19722643 I
e odoRosDiv1.KB229025            3044081 15 +   4816872 I
e canFam3.chr17                 57849459  1 -  64289059 I
e felCat8.chrA3                134117276  7 + 140925898 I
e ornAna1.Contig53964                668  0 -      2070 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221220               3809684  0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH737491                498705 1755 -    628740 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e sarHar1.chr1_GL834688_random    539546 10 +   3395230 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530542478 10 + 748055161 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e dasNov3.JH567436               1049308 24 -   2788317 I
e pteAle1.KB030580              19419552  0 -  23789964 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-36730.000000
s hg38.chr8_KI270814v1_alt         91111 27 +    141812 CACAGAGGGCCCTCCTGAA------------CAGCCCTG
s ponAbe2.chr8                  59060604 27 + 153482349 CACAGAGGGCCCTCCTGAA------------CAGCCCTG
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99352706 37 + 108792865 cacaGAGGGCCCTCCTGAA--CAGATGTGCTCAGTCCTG
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24019299 37 +  27210278 cacaGAGCGCCCTCCTGAA--CAGATGTGGTCAGCCCTG
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21198461 37 -  23169006 CACAGAGGGTCCTCCTGAA--CAGATGCACCTGGTCCTG
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19221008 37 -  22931326 CACACAGGGTCCTCATGAA--CACCTGCTCCCTGGCCTG
i vicPac2.KB632437             C 0 I 2
s camFer1.KB017763               2815011 37 -   6207710 CACACAGGGTCCTCGTGAA--CACCTGCTCCCAGGCCGG
i camFer1.KB017763             C 0 I 2
s orcOrc1.KB316907              10851003 37 +  17242564 CACACGGGGCCCTCGTGAA--CACGTGCTCCCAGGCCTG
i orcOrc1.KB316907             C 0 I 2
s equCab2.chr15                 84045202 37 +  91571448 CACACAGGGCCCTTGTGAA--TATGTGCTCCCAGGGCAG
i equCab2.chr15                C 0 I 2
s cerSim1.JH767782               6826281 37 -  14545593 CACACGGGGCCCTCGTGAA--CACATGCTCCCAGTCCTG
i cerSim1.JH767782             C 0 I 2
s felCat8.chrA3                134117283 24 + 140925898 -------------CGGGGA--CACAGGCTCCCAGGCCGC
i felCat8.chrA3                I 7 I 3
s canFam3.chr17                 57849460 16 -  64289059 -----------------------TGCACTCCCAGGCCAG
i canFam3.chr17                I 1 I 5
s odoRosDiv1.KB229025            3044096 22 +   4816872 ---------------CGAA--CACATGCTCCCAGGCCGC
i odoRosDiv1.KB229025          I 15 I 6
s pteAle1.KB030580              19419552 24 -  23789964 -------------CGGGGG--CACCCGCTCCTGGTCCTG
i pteAle1.KB030580             C 0 I 13
s loxAfr3.scaffold_20           27632552 33 -  46401353 CAAAGAGGGCCCTC----A--CCTAACATAACAGTACTG
i loxAfr3.scaffold_20          C 0 I 2
s triMan1.JH594629               9979170 32 +  24341844 CAAACAGGGTCCTC-------CCACACCTAACAGTACTG
i triMan1.JH594629             C 0 I 2
s dasNov3.JH567436               1049332  8 -   2788317 -------------------------------CAGTACTG
i dasNov3.JH567436             I 24 I 2
s monDom5.chr1                 530542488 12 + 748055161 -----GCTGCCTCTTTG----------------------
i monDom5.chr1                 I 10 C 0
s sarHar1.chr1_GL834688_random    539556 12 +   3395230 -----GCTGCCTTCTTG----------------------
i sarHar1.chr1_GL834688_random I 10 C 0
s allMis1.JH737491                500460 27 -    628740 CACAGAGGCCTCTTCTGAG------------CAGAGCAG
i allMis1.JH737491             I 1755 C 0
s xenTro7.KB021656              10784508 22 + 142678541 ---------------CATA--CAGACCCACACTGACCTA
i xenTro7.KB021656             C 0 C 0
s gasAcu1.chrXV                  6167338 20 +  16198764 -------------TATGAAGCTAAATAGGCTCA------
i gasAcu1.chrXV                C 0 C 0
e musFur1.GL896914              13621308 287 -  19722643 I
e ornAna1.Contig53964                668  0 -      2070 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221220               3809684  0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=13837.000000
s hg38.chr8_KI270814v1_alt         91138 5 +    141812 TCTG--T
s ponAbe2.chr8                  59060631 5 + 153482349 TCTG--T
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99352743 5 + 108792865 TCCC--T
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24019336 5 +  27210278 TCCC--T
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21198498 7 -  23169006 TCTCCTT
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19221047 5 -  22931326 TCTT--G
i vicPac2.KB632437             I 2 C 0
s camFer1.KB017763               2815050 5 -   6207710 TCTT--G
i camFer1.KB017763             I 2 C 0
s orcOrc1.KB316907              10851042 5 +  17242564 TCTT--C
i orcOrc1.KB316907             I 2 C 0
s equCab2.chr15                 84045241 5 +  91571448 TCTT--T
i equCab2.chr15                I 2 C 0
s cerSim1.JH767782               6826320 5 -  14545593 TCTC--T
i cerSim1.JH767782             I 2 C 0
s felCat8.chrA3                134117310 4 + 140925898 -CTG--T
i felCat8.chrA3                I 3 C 0
s canFam3.chr17                 57849481 2 -  64289059 ---C--T
i canFam3.chr17                I 5 C 0
s odoRosDiv1.KB229025            3044124 1 +   4816872 ------T
i odoRosDiv1.KB229025          I 6 C 0
s loxAfr3.scaffold_20           27632587 5 -  46401353 TCTT--T
i loxAfr3.scaffold_20          I 2 C 0
s triMan1.JH594629               9979204 5 +  24341844 TCTT--T
i triMan1.JH594629             I 2 C 0
s dasNov3.JH567436               1049342 5 -   2788317 TCTT--T
i dasNov3.JH567436             I 2 C 0
s allMis1.JH737491                500487 5 -    628740 CCTG--A
i allMis1.JH737491             C 0 C 0
s xenTro7.KB021656              10784530 5 + 142678541 TCTG--T
i xenTro7.KB021656             C 0 N 0
s gasAcu1.chrXV                  6167358 5 +  16198764 TGTT--T
i gasAcu1.chrXV                C 0 I 1
e musFur1.GL896914              13621308 287 -  19722643 I
e ornAna1.Contig53964                668 0 -      2070 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221220               3809684 0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e sarHar1.chr1_GL834688_random    539568 0 +   3395230 C
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929605                579960 0 +   1015623 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736 1 +    779542 I
e pelSin1.JH207189               1424965 0 +   1874153 I
e melUnd1.JH556573                751858 2 +  10614383 I
e monDom5.chr1                 530542500 0 + 748055161 C
e taeGut2.chr18                  2064101 602 -  11201131 I
e pteAle1.KB030580              19419576 13 -  23789964 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=86863.000000
s hg38.chr8_KI270814v1_alt         91143 8 +    141812 GGCAGCAG
s ponAbe2.chr8                  59060636 8 + 153482349 GGCAGCAG
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99352748 8 + 108792865 GGCAGCAG
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24019341 8 +  27210278 GGCAGCAG
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21198505 8 -  23169006 GGCAGCAG
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19221052 8 -  22931326 GGCAGCAG
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2815055 8 -   6207710 GGCAGCAG
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10851047 8 +  17242564 GGCACCAG
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84045246 8 +  91571448 GGCAGCAG
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6826325 8 -  14545593 GGCAGCAG
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134117314 8 + 140925898 GGCAGCAG
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57849483 8 -  64289059 GGCAGCAC
i canFam3.chr17                C 0 C 0
s odoRosDiv1.KB229025            3044125 8 +   4816872 GGCAGCAG
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19419589 2 -  23789964 ------GC
i pteAle1.KB030580             I 13 C 0
s loxAfr3.scaffold_20           27632592 8 -  46401353 GGCACCAA
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9979209 8 +  24341844 GGCAGCAG
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1049347 8 -   2788317 AGCAGCAA
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530542500 7 + 748055161 -GCAATGG
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    539568 7 +   3395230 -GCAATGA
i sarHar1.chr1_GL834688_random C 0 C 0
s allMis1.JH737491                500492 8 -    628740 GCCAGGAG
i allMis1.JH737491             C 0 n 0
s gasAcu1.chrXV                  6167364 8 +  16198764 TGCTGCAG
i gasAcu1.chrXV                I 1 C 0
e musFur1.GL896914              13621308 287 -  19722643 I
e ornAna1.Contig53964                668 0 -      2070 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221220               3809684 0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929605                579960 0 +   1015623 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736 1 +    779542 I
e pelSin1.JH207189               1424965 0 +   1874153 I
e melUnd1.JH556573                751858 2 +  10614383 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=73194.000000
s hg38.chr8_KI270814v1_alt         91151 41 +    141812 AGT-TG--TTGAT----------------------AGTGTAACT----------AAAAAGGAAAGTGGGG--A------------------AGTCC
s ponAbe2.chr8                  59060644 41 + 153482349 AGT-TG--CTGAT----------------------AGTGTAACT----------AAAAAGGAGAGTGGGG--A------------------AGTCC
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99352756 40 + 108792865 ACA-CG--CTGAT----------------------TCTTTAATT----------AAAAAGGAGAGCGAGG---------------------AGCCC
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24019349 40 +  27210278 ACT-CG--CTGAA----------------------TGTTTAATT----------AAAAAGGAGAGCGAGG---------------------AGCCC
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21198513 50 -  23169006 AGC-TGTTCTGAT-----AATTCTCTG--------TGTTTAATT----------AAAAAGTAGG--GGGG--A------------------AGCCC
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19221060 47 -  22931326 TTCTTGCTCTGAA-----GGGT-------------TGTTTAGTT----------AAGAATGAGACGGAGG---------------------AGCCC
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2815063 47 -   6207710 TTCTTGCTCTGAA-----GGGT-------------TGTTTAGTT----------AAAAATGAGACGGAGG---------------------AGCCC
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10851055 44 +  17242564 GGC-CACTCTGAC-----GGTT-------------TGTTTAATC----------AAAG--GAGACGGGGG---------------------AGCCC
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84045254 42 +  91571448 AGC-CACTCTGAT-----GGT-----------------TTAATT----------AAAAAGGAGAGGGGAG---------------------AGCCC
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6826333 46 -  14545593 AGC-CACTCTGAT-----GGTT-------------TGCTTAATT----------AAAAAGGAGAGGGGGG---------------------AGCCC
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134117322 47 + 140925898 AGC-CCCGCCGCT-----GATT-------------TGTTTAATT---------AAAAACGAAGGGAGGGG---------------------AGCCC
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57849491 48 -  64289059 AGC-CACTCCGCT-----GGTT-------------TGTTTAATT-----------AGAAAAGGGCGGGGGGGA------------------AGCCC
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13621595 57 -  19722643 -----tctctgtcaaatagata-------------aataaaatcttaaaaaaaaaAAAAAAAGGCGGGGG---------------------AACTT
i musFur1.GL896914             I 287 C 0
s odoRosDiv1.KB229025            3044133 43 +   4816872 AAC-CACTCTGCT-----GGTT-------------TGTATAATC-------------AAAAGGAGGGGGG---------------------AGCCC
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19419591 35 -  23789964 AGC-CACTCTGAC------GTT-------------TGTTTAATT----------AAAAA---------GG---------------------AGCT-
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27632600 65 -  46401353 GCC-CATGCTGAT-----CATT-------------TGTTTAATT----------AAGGAGGATGCGGGGG--GGGGGGCGTTGACGGGAGTAGCCC
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9979217 45 +  24341844 AGC-CACTCTGAT-----A-----------------GTTTAATT----------AAGAAGGATGGGGGAG--AGG----------------AGCCC
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1049355 47 -   2788317 AGT-CATTCTGAT-----AGTT-------------TGTTTAATT----------AAAAAGGAAAGGGGGA--A------------------AGCCT
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530542507 44 + 748055161 AAG-CAGCCTGAT-----A-----------------GTTTAATT----------AAACAGGGGAGGGGGT--AG-----------------AGCCC
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    539575 48 +   3395230 AAC-CGGGCTGAT-----AGTT-------------TGTTTAatt----------aaaaaggggaggggga--ag-----------------agccC
i sarHar1.chr1_GL834688_random C 0 C 0
s gasAcu1.chrXV                  6167372 41 +  16198764 -------------------------AGATATCAATCATGTTATT----------AAAAAGGGGAAAGTGG--A------------------AATCC
i gasAcu1.chrXV                C 0 N 0
e ornAna1.Contig53964                668  0 -      2070 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221220               3809684  0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH737491                500500  0 -    628740 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=1244430.000000
s hg38.chr8_KI270814v1_alt         91192 119 +    141812 ATGCTGATCTTGACT---GTTTAACACAAACTGAAAGATCAAAACCAAGGAGCTGCCAAAAACACA--TTGGCAA-CTTTCACAC-CA---GAA-CAAGAAAG----GAAATCACT---GACTTGGTTTCTGCTCTT
s ponAbe2.chr8                  59060685 119 + 153482349 ATGCTGATCTTGACT---GTTTAACACAAACTGAAAGATTGAAACCAAGGAGCTGCCAAAAACACA--TTGGCAA-CTTTCACAC-CA---GAA-CAAGAAAG----GAAATCACT---GACTTGGTTTCTGCTCTT
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99352796 115 + 108792865 TTTCTGATCC----T---GTTTAACACAAACTGCAAGATCAAAACCAACCAGCTGCCAAAAACACA--TCGGCAA-CTTTCACAC-CA---GAA-CGAGGAGG----GAAATCGCT---GACCTGGTTTCTGCTCTT
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24019389 119 +  27210278 ATTCTGATCCTAAGT---GTTTAATACAAACTGAAAGATCAAAACCAATCAGCTGCCAAAGTCACA--CTGGCAA-CTTTCACAC-CA---GAA-CAAGGAGG----GAAATAGCT---GACCTGGTTTCTGCTCTT
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21198563 119 -  23169006 ACAGTGATCTTGAGT---GTTTAACACAAACTGAAAGATCAAAACCAACCAGCTGCCAAAAACACG--CTGGCAA-CTTTCACAC-CA---GAA-CAAGGAGA----GAAACTGCT---GACCTGGTTTCTGCTCTT
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19221107 117 -  22931326 ACGCCGAGCTCCAGT---GTTTAACACAAACTGCAAGATCAAAGCCAGCCAGCTGCCAAAAAC-----CTGGCAA-CTTTCACAC-CA---GAAGAAAGAGGG----GAAACAGCT---GACCTGGTTTCTGCCTTT
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2815110 117 -   6207710 ACGCCGAGCTCCAGT---GTTTAACACAAACTGCAAGATCAAAGCCAGCCAGCTGCCAAAAAC-----CTGGCAA-GTTTCACAC-CA---GAAGAAAGAGGG----GAAACAGCT---GACCTGGTTTCTGCCTTT
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10851099 118 +  17242564 ACGCAGATCTTGAGT---GTTTAACACAAACTGGAAGATCAAAACTGGGCAGCTGCCAAAAACA----CTGGCAA-CTTTCACAC-CA---CAAGAAAGAGGG----GAAACAGCT---GACCTGGTTTCTGCCTTT
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84045296 120 +  91571448 TTGCCAATCTTGAGT---GCTTAACACAAACTGAAAGATCAAAACCAGCCAGCTGCCAAAAACACA--TTGGTAA-CTTTCACAC-CA---GAAGAAAGAGGG----GAAACAGCT---GACCTGGTTTCTGCCTTT
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6826379 120 -  14545593 CCGCTGATCTTGAGT---GTTTAACACAAACTGAAAGATCAAAACCAGCCAGCTGCCAAAAACACA--CTGGCAA-CTTTCACAC-CA---GGAGAAAGAGAG----GAAATAGCT---GACCTGGTTTCTGCCTTT
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134117369 123 + 140925898 ACGCTGATCTTGAGTTAAGTCTGACACAAACTGAAAGATCAAAACCAGCCAGCTGCCAAAAACACA--CTGGCAA-CTTTCACAC-CA---GAGACACGAGGG----GATACGGCT---GACCTGGTTTCTGCCTTG
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57849539 123 -  64289059 ACGCCGATCTTGAGTTAAGTTTAACACAAACTGAAAGATCCAAACCAGCCAGCTGCCAAAGACACA--CTGGCAA-CTTTCACAC-CA---GAAACACGATGG----GATGTAGCT---GGCCTGGTTTCTGCCTTA
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13621652 128 -  19722643 ACACTGATCTTGAGTTCAGTTTAACACAAACTGAAAGATCAAAACCAGCCAGCTGCCAAAAACACACCCCGGCGA-CTTTCATAC-CA---GACACGCGGCGG----GCTACAGCTTAGCGGTCGGTTTCTGCCTTC
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3044176 123 +   4816872 ACGCTGATCTTGAGTTAAGTTTAACACAAACTGAGAGATCAAAACCAGCCAGCTGCCAAAAACACACACTGGCGA-GTTTCACAA-CA---GAGACACAACGG----GATATAGCT-----GCTGGTTTCTGCCTTA
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19419626 108 -  23789964 ------------GGT---GTTTAACACAAAGTGCAAGCACGAAACCAGCCAGCTGCCAAA-ACACA--GCGGCGATTTTTCACAC-CA---GGAGAAAGAGGG----TGAAAGGCT---GGCCCGACTTCTATCTTT
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27632665 120 -  46401353 ACACCTATCTTGAGT---GTTTAACACAAACTGAAAGATCAAACCCAACCAGCTGCCAAAAACATA--TTCGCAA-CTTTCACAC-CA---GAAAAAGGAGCG----GGTAAAGTT---GACCTGGTTTCTGTTTTT
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9979262 124 +  24341844 ACACCAATCTTGAGT---GTTTAACACAAATTGAAAGATCAAACCCAACCAGCTGCCAAAAACATA--TTGGCAA-CTTTCACAC-CA---GAAAAAGGAGGGGGGAGGTAAAGCT---GACCTGGTTTCTGCTTTT
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1049402 122 -   2788317 ATGATAATCTTGAGC---GTTTAACACAAACTGAAAGATCAAAATCCACAAGCTGACAAAAACACA--CTGACAA-TTTTCACACAAA---GAAAAAGGAGGAG---GGGGAAgtt---gacctggtgtctgctttt
i dasNov3.JH567436             C 0 I 487
s monDom5.chr1                 530542551 121 + 748055161 ACGCAGATCCTCAGT---GTTTAACAGAAACTGAAAGATCAGAATGCACCAGCTGGCAGAAACA----CTGGCAA-CTTTCACAC-CAAGGGAAGAAAAAAAT----GAAACCATT---GACCTGGTTTCTGCTTTT
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    539623 122 +   3395230 ACACAGATCCTCAGT---GTTTAACA-AAACTGAAAGATCAAAATGGACCAGCTGGCAGAAACACT--CTGGCAA-CTTTCAcac-caagggagaaaaaaagt----gaaactatt---GACCTGGTTTCTGCTTTT
i sarHar1.chr1_GL834688_random C 0 C 0
e ornAna1.Contig53964                668   0 -      2070 I
e tetNig2.chr10                  6379385   0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382   0 -   6649201 I
e hapBur1.JH425491                252157   0 -   1273513 I
e neoBri1.JH422308               3491820   0 -   5414369 I
e araMac1.AOUJ01470298               637   0 -       895 I
e takFla1.AOOT01113665               306   0 +       323 I
e fr3.HE591725                    289786   0 -    411779 I
e ficAlb2.chr2                 148476508   0 + 157563209 I
e anoCar2.chr1                 148577473   4 + 263920458 I
e pseHum1.KB221220               3809684   0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214   0 -  25666195 I
e allMis1.JH737491                500500   0 -    628740 I
e falPer1.KB390952               2753956   0 -  18327016 I
e falChe1.KB397350               1707310   0 -   3649919 I
e macEug2.GL109592                105897   0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802   0 +   2102797 I
e melGal1.chr7                  34310641   0 -  38723565 I
e anaPla1.KB742696               1254472   0 -   1270250 I
e amaVit1.AOCU01222764              1324   0 -      1397 I
e apaSpi1.KB929605                579960   0 +   1015623 I
e cheMyd1.KB605988                134509   0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736   1 +    779542 I
e pelSin1.JH207189               1424965   0 +   1874153 I
e melUnd1.JH556573                751858   2 +  10614383 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=61637.000000
s hg38.chr8_KI270814v1_alt         91311 8 +    141812 AATGTTGC
s ponAbe2.chr8                  59060804 8 + 153482349 AATGTTGC
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99352911 8 + 108792865 AATGCTGC
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24019508 8 +  27210278 AATGCTGC
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21198682 8 -  23169006 AATGCTGC
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19221224 8 -  22931326 AATGCTGC
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2815227 8 -   6207710 AACGCTGC
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10851217 8 +  17242564 AACGCTGC
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84045416 8 +  91571448 AACGTCAA
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6826499 8 -  14545593 AACGTTGA
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134117492 8 + 140925898 CACGCTGT
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57849662 8 -  64289059 CACACTGC
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13621780 8 -  19722643 CACGCTGC
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3044299 8 +   4816872 CCCGCTGT
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19419734 8 -  23789964 GACGCTGC
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27632785 8 -  46401353 AACTCTAC
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9979386 8 +  24341844 AACACTGC
i triMan1.JH594629             C 0 C 0
s monDom5.chr1                 530542672 8 + 748055161 AACACCAC
i monDom5.chr1                 C 0 C 0
s sarHar1.chr1_GL834688_random    539745 8 +   3395230 AACACTAC
i sarHar1.chr1_GL834688_random C 0 C 0
e ornAna1.Contig53964                668 0 -      2070 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221220               3809684 0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH737491                500500 0 -    628740 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929605                579960 0 +   1015623 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736 1 +    779542 I
e pelSin1.JH207189               1424965 0 +   1874153 I
e melUnd1.JH556573                751858 2 +  10614383 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e dasNov3.JH567436               1049524 487 -   2788317 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=513896.000000
s hg38.chr8_KI270814v1_alt         91319 51 +    141812 TTCTCTTGCAGTCA--AATGCTCTCGTCTTTCA-GGCTCTA-AGTGGAGAGAAAA
s ponAbe2.chr8                  59060812 51 + 153482349 TTCTCTTGCAGTCA--AATGCTCTCGTCTTTCA-GGCTCTA-AGTGGAGAGAAAA
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99352919 51 + 108792865 TTCCCTGGCAGTCA--ACAGTTCTGATCTTTCA-GGCTCTA-AATGGAGAGAAAA
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24019516 51 +  27210278 TTCACTGGCAGTCA--ACAGTTCTGATCTTTCA-GGCTCTA-AATGGAGAGAAAA
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21198690 48 -  23169006 TTCT---GTAGTTG--CCTGCTCTCATCTTTCA-AGTTCTA-AGTGGAGAGAAAA
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19221232 52 -  22931326 GTCACTGGCAGTCGC-GCTGCTTTGATCTGTCA-GGTACTA-AGTGGAGAGAATA
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2815235 52 -   6207710 GTCACTGGCAGTCGT-GCTGCTTTGATCTGCCA-GGTTCTA-AGTGGAGAGAATA
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10851225 52 +  17242564 GTCTCTGGCAGTCAC-ACAGCTTTGATCTTTCA-GGTTCTA-AGTGGAGAGAAAA
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84045424 52 +  91571448 GTCACTGGCAGCCAG-GCTGCTTTGATCTTTCA-GGTTCTA-AGTAGAAAGAAAA
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6826507 52 -  14545593 GTCACTGGCAGTCAC-GCTGCTTTGATCTTTCA-GGTTCTC-AGTGGAGGGAAAA
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134117500 53 + 140925898 GTCTCTGCCAGTCAC-ACTGCTCTGATCTTTCACGGTTCCA-AGTGGAGAGAAAA
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57849670 52 -  64289059 GTCTCTGCCACTCAT-ACTGCTTTGATCTGTCA-GGTTCTA-AGTGGAGAGAAAA
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13621788 52 -  19722643 ATCTCCGCCAGTCAC-GCTGTTTTGATCTTTCA-CGTTCTA-AGTGGAGAGAAAA
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3044307 52 +   4816872 GTCTCCACCAGTCAC-ACTGCTTGGATCTTTCA-GGTTCTA-AGTGGAGAGAAAA
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19419742 50 -  23789964 GT--CTGGCTGTCAC-ACGGCTTTGATCTTTCA-GGTTCTA-AGTGGAGAGAAAA
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27632793 52 -  46401353 TTTTCTGGCAGTCGC-ATGGCTTTGATCTTTCA-GGTTCTA-AGTGGAGAGAAAA
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9979394 52 +  24341844 TTCTCTGGCAGTTAC-AGTGCTTTGATCTTTCA-GGTTCTA-AGTGGAGAGAAAA
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1050011 52 -   2788317 tttcccAGCAGCCAC-ACTGCTTTGATCTCTCA-AGTTCTA-AGTGGAGTGAAAA
i dasNov3.JH567436             I 487 C 0
s monDom5.chr1                 530542680 54 + 748055161 TTCTCTAGTAGTCACAACTATTTTGATCTTTTG-GACTCTGTTGTGGGGGTGGAA
i monDom5.chr1                 C 0 I 6
s sarHar1.chr1_GL834688_random    539753 54 +   3395230 TTCTCTGGTACTCACAACTACTTTGATCTTTTG-TGCTTTATTgtggagatggaa
i sarHar1.chr1_GL834688_random C 0 n 0
e ornAna1.Contig53964                668  0 -      2070 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221220               3809684  0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH737491                500500  0 -    628740 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=2589.000000
s hg38.chr8_KI270814v1_alt         91370 1 +    141812 T
s ponAbe2.chr8                  59060863 1 + 153482349 T
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99352970 1 + 108792865 C
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24019567 1 +  27210278 C
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21198738 1 -  23169006 T
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19221284 1 -  22931326 T
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2815287 1 -   6207710 G
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10851277 1 +  17242564 T
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84045476 1 +  91571448 C
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6826559 1 -  14545593 C
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134117553 1 + 140925898 T
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57849722 1 -  64289059 T
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13621840 1 -  19722643 C
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3044359 1 +   4816872 T
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19419792 1 -  23789964 C
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27632845 1 -  46401353 C
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9979446 1 +  24341844 T
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1050063 1 -   2788317 T
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530542740 1 + 748055161 T
i monDom5.chr1                 I 6 I 3769
e ornAna1.Contig53964                668 0 -      2070 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221220               3809684 0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH737491                500500 0 -    628740 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e sarHar1.chr1_GL834688_random    539807 0 +   3395230 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929605                579960 0 +   1015623 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736 1 +    779542 I
e pelSin1.JH207189               1424965 0 +   1874153 I
e melUnd1.JH556573                751858 2 +  10614383 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=156132.000000
s hg38.chr8_KI270814v1_alt         91371 129 +    141812 TG-GGCCCTCAA-------CCAGTCTCCACTAG-A--ATAAATGATCAG-TCATACATGTC-AGG--AAGCTACC----TACAACCATGTTG-ACAC--CTGCTGAAAGCTGGTTCT----GAGACCTGG-----------------------------------------G-GAGCAG----CACCAGAGAACCCAGG------AC
s ponAbe2.chr8                  59060864 130 + 153482349 TG-GGCCCTCAA-------CCAGTCTCCACTAG-A--ATAAATGATGGGTTCATACATGTC-AGG--AAGCTACC----TACAACCATGTTG-ACAC--CTGCTGAAAGCTGGTTCT----GAGACCTGG-----------------------------------------G-GAGCAG----CACCAGAGAACCCAGG------AG
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99352971 131 + 108792865 TG-GGCCTTCTGCC-----CCCTTCTCCACTAG-A--ATAAACAATGAGCTTGGAGGTGTC-AGT--CGGCCACC----AACAACCGCGCTG-ACAC--TCGCTGAAGGCCGG-TCT----GAGAACCGG-----------------------------------------A-CGGCAG----CACTGGAGAACCCAGG------AC
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24019568 132 +  27210278 TG-GGCCCTCTGCC-----CCCTTCTCCACTAG-A--ATGAACAATGAGCTTGGACGTGTCAAGT--CAGCCACC----AGCAACTGTGCTG-ACAC--TCGCTGAAGGCCGG-TCT----GAGAACCAG-----------------------------------------A-CGGCAG----CACTGGAGAACCCAGG------AC
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21198739 136 -  23169006 GA-GCTCTCCTT-------CCTTTCTCCACTAG-A--ATGAATGATGAGCTGTGATGCATC-AGG--C--CTACCTTATTATAACAGCACTG-ACAC--CTGCAGAAGGCCGGTTCCGACAGAGGCAGGG-----------------------------------------G-GCGCCG----CACAGGAGAATCTGGG------GC
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19221285 130 -  22931326 AGCGACCCTTT--------CCCTCTTCCACCAG-AGAGCAGATGAGGAAACCACACACCGC-AGC-----CTGC-----CACAGCTGTGCTGAGAAC--CCGTGTACGGCCAACTCC----GAGAGGCAG-----------------------------------------AGGGGCAG----CACAGAAGAACCCAGG------GC
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2815288 129 -   6207710 AGCGACCCTTT--------CCCTCTTCCACCAG-AGAGCAGATGAGGAAACCACACACCGC-AGC-----CTGC-----CACAGCTGTGCGGAGAAC--CCGTGTATGGCCAACTCC----GAGAGGCAG-----------------------------------------A-GGGCAG----CACAGAAGAACCCAGG------GC
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10851278 110 +  17242564 AGTGA--------------CCCTCTTCCACTGG-AGAACGGATGATGAAACCACACACTGC-AGC-----CTACT----TGCAACCGTCTGGAAAAG--CCGCGTTT-------TCT----GGG-------------------------------------------------GGCCAG----CACAGAAGGGCCCAGG------AT
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84045477 139 +  91571448 ACTGACCTCCTGCCC----CCCTCTTCCACTGG-AGAACAGATGATGAAACTACACACTTG-GGA-----CTACC----TACAACCCTGCTGAAAAC--CCACAGACGGCCAACTCGGA--GAGACAGAC-----------------------------------------A-GGTCAG----CACAGAAGAACCCAGG-ATCCA--
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6826560 141 -  14545593 AGTGACCCTCTGCCCCCCTCCCTCTTCCACTGG-AGAACACATGATGAAACCACACACTTC-GGC-----CTACC----TACAACCCTGCTGAAAAC--CCGCAGACGGCCAACTCT----GAGACAGAG-----------------------------------------A-GGCCAG----CACAGAAGAACCCAGG-ATCCA--
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134117554 135 + 140925898 GGTGACCCTCTGCCC----CTCTTTTCCATTCA-ACGCTAGGTGCTAAAGCTGCACACTTC-GGC-----CCACC----TGCAGCCATGCTG-AAAA--CCGCGGACGGCCAGCCCC----GAGGCTCA------------------------------------------G-GGGAGCACCGACCGGGAGAACCCAGGA-------
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57849723 131 -  64289059 AGTGACCCTTTGCCC----CTCTTTTCCATCAG-AGGCCAGGTGTTGAAATTACACACTAC-AGC-----CTCCC----TGCAGCCATGCTGGAAAC--CCACAGACATCCCCCTCT----GAGGCCTAG-----------------------------------------G-GGCAGC----CACAGAAGAACCCAG---------
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13621841 121 -  19722643 AGTGACCCTCCGCCC----CTCTCCTCCATTAG-GGGCGGGA--------------GCTTC-AGCTCCAGCTCCA----CGCAGCTGTGCCG-AACC--CCGCGGACAGCCGACTCC----GAGGCCCC------------------------------------------C-GAGAGC----ACCAGAACCACCCAGG--------
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3044360 132 +   4816872 AGTTACCCTTTGCCC----CTCTTTTCCATTAG-AGGCTAGGTGTTGAAATTGCACACTTC-AGC-----CTACC----TGCAGCCATGCTGAAAAC--CCGCAGACAGCCGACTCC----GAGGCACTG-----------------------------------------G-GGGAGC----ACCAGAACTATCCAGA--------
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19419793 154 -  23789964 --TGACCCTCGGCCT----GCCTCTTCCACTAG-AGGACAGATGACGAAACCACACACTTC-GGC-----CTCTT----CGCAACCCTGCTGAAAAC--CAGTGCACGGCCGACTCT----GGGAGGTGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTG-GGCAG-----------------------------
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27632846 103 -  46401353 CATGACCCTTTGCCC----TCTCCTTCCACCAG-GCAGTAAATGATGGAACTGT---------------------------------------------ACACTTAAGGTCAATTCTGG--GAGGCAAAG-----------------------------------------G-TGGCAG----GACAGAAGAACACAGG------AC
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9979447  96 +  24341844 AATGACCCTCTGGC--------CCTCCCACTAG-AGAGTAAATGATGAAACTAT---------------------------------------------ACACTTAAGGCCAATTCTGA--GAGGCAAAG-----------------------------------------G-TGGCAG----GAC---AGAACACAGG------AC
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1050064 138 -   2788317 AATGACCCTTTACGC----CCTGCTTCCACTGGAGGAAAAAAAAATGAAACTGTCCATTTC-AGC-----CTACC----TACAACCATGCTG-AAACTCCCACTTAAGGCCTATTCTAA--GTGGCAAAG-----------------------------------------G-AGACAG----GGAAGGAGAACAAAGG------AC
i dasNov3.JH567436             C 0 I 7
e ornAna1.Contig53964                668   0 -      2070 I
e tetNig2.chr10                  6379385   0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382   0 -   6649201 I
e hapBur1.JH425491                252157   0 -   1273513 I
e neoBri1.JH422308               3491820   0 -   5414369 I
e araMac1.AOUJ01470298               637   0 -       895 I
e takFla1.AOOT01113665               306   0 +       323 I
e fr3.HE591725                    289786   0 -    411779 I
e ficAlb2.chr2                 148476508   0 + 157563209 I
e anoCar2.chr1                 148577473   4 + 263920458 I
e pseHum1.KB221220               3809684   0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214   0 -  25666195 I
e allMis1.JH737491                500500   0 -    628740 I
e falPer1.KB390952               2753956   0 -  18327016 I
e falChe1.KB397350               1707310   0 -   3649919 I
e macEug2.GL109592                105897   0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802   0 +   2102797 I
e sarHar1.chr1_GL834688_random    539807   0 +   3395230 I
e melGal1.chr7                  34310641   0 -  38723565 I
e anaPla1.KB742696               1254472   0 -   1270250 I
e amaVit1.AOCU01222764              1324   0 -      1397 I
e apaSpi1.KB929605                579960   0 +   1015623 I
e cheMyd1.KB605988                134509   0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736   1 +    779542 I
e pelSin1.JH207189               1424965   0 +   1874153 I
e melUnd1.JH556573                751858   2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=6461.000000
s hg38.chr8_KI270814v1_alt         91500 3 +    141812 TCA
s ponAbe2.chr8                  59060994 3 + 153482349 TCA
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99353102 3 + 108792865 TCA
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24019700 3 +  27210278 TCA
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21198875 3 -  23169006 TCC
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19221415 3 -  22931326 TCA
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2815417 3 -   6207710 TCA
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10851388 3 +  17242564 TCA
i orcOrc1.KB316907             C 0 C 0
e musFur1.GL896914              13621962 0 -  19722643 C
e odoRosDiv1.KB229025            3044492 0 +   4816872 C
e canFam3.chr17                 57849854 0 -  64289059 C
e felCat8.chrA3                134117689 0 + 140925898 C
e ornAna1.Contig53964                668 0 -      2070 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221220               3809684 0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH737491                500500 0 -    628740 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e sarHar1.chr1_GL834688_random    539807 0 +   3395230 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929605                579960 0 +   1015623 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736 1 +    779542 I
e pelSin1.JH207189               1424965 0 +   1874153 I
e melUnd1.JH556573                751858 2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e dasNov3.JH567436               1050202 7 -   2788317 I
e equCab2.chr15                 84045616 0 +  91571448 C
e triMan1.JH594629               9979543 0 +  24341844 C
e loxAfr3.scaffold_20           27632949 0 -  46401353 C
e pteAle1.KB030580              19419947 0 -  23789964 C
e cerSim1.JH767782               6826701 0 -  14545593 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=4743.000000
s hg38.chr8_KI270814v1_alt         91503 4 +    141812 GGCA
s ponAbe2.chr8                  59060997 4 + 153482349 GGCA
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99353105 4 + 108792865 GGCA
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24019703 4 +  27210278 GGCA
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21198878 4 -  23169006 GGCA
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19221418 4 -  22931326 TGTA
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2815420 4 -   6207710 TGTA
i camFer1.KB017763             C 0 C 0
e musFur1.GL896914              13621962 0 -  19722643 C
e odoRosDiv1.KB229025            3044492 0 +   4816872 C
e canFam3.chr17                 57849854 0 -  64289059 C
e felCat8.chrA3                134117689 0 + 140925898 C
e ornAna1.Contig53964                668 0 -      2070 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221220               3809684 0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH737491                500500 0 -    628740 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e sarHar1.chr1_GL834688_random    539807 0 +   3395230 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929605                579960 0 +   1015623 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736 1 +    779542 I
e pelSin1.JH207189               1424965 0 +   1874153 I
e melUnd1.JH556573                751858 2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e dasNov3.JH567436               1050202 7 -   2788317 I
e equCab2.chr15                 84045616 0 +  91571448 C
e triMan1.JH594629               9979543 0 +  24341844 C
e loxAfr3.scaffold_20           27632949 0 -  46401353 C
e pteAle1.KB030580              19419947 0 -  23789964 C
e cerSim1.JH767782               6826701 0 -  14545593 C
e orcOrc1.KB316907              10851391 0 +  17242564 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=1144.000000
s hg38.chr8_KI270814v1_alt         91507 2 +    141812 CC
s ponAbe2.chr8                  59061001 2 + 153482349 CC
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99353109 2 + 108792865 CC
i calJac3.chr14                C 0 I 3
s saiBol1.JH378126              24019707 2 +  27210278 CC
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21198882 2 -  23169006 AC
i otoGar3.GL873541             C 0 C 0
e musFur1.GL896914              13621962 0 -  19722643 C
e vicPac2.KB632437              19221422 0 -  22931326 C
e camFer1.KB017763               2815424 0 -   6207710 C
e odoRosDiv1.KB229025            3044492 0 +   4816872 C
e canFam3.chr17                 57849854 0 -  64289059 C
e felCat8.chrA3                134117689 0 + 140925898 C
e ornAna1.Contig53964                668 0 -      2070 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221220               3809684 0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH737491                500500 0 -    628740 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e sarHar1.chr1_GL834688_random    539807 0 +   3395230 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929605                579960 0 +   1015623 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736 1 +    779542 I
e pelSin1.JH207189               1424965 0 +   1874153 I
e melUnd1.JH556573                751858 2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e dasNov3.JH567436               1050202 7 -   2788317 I
e equCab2.chr15                 84045616 0 +  91571448 C
e triMan1.JH594629               9979543 0 +  24341844 C
e loxAfr3.scaffold_20           27632949 0 -  46401353 C
e pteAle1.KB030580              19419947 0 -  23789964 C
e cerSim1.JH767782               6826701 0 -  14545593 C
e orcOrc1.KB316907              10851391 0 +  17242564 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=302.000000
s hg38.chr8_KI270814v1_alt         91509 2 +    141812 TA
s ponAbe2.chr8                  59061003 2 + 153482349 TA
i ponAbe2.chr8                 C 0 C 0
s saiBol1.JH378126              24019709 2 +  27210278 CA
i saiBol1.JH378126             C 0 I 1
e musFur1.GL896914              13621962 0 -  19722643 C
e vicPac2.KB632437              19221422 0 -  22931326 C
e camFer1.KB017763               2815424 0 -   6207710 C
e odoRosDiv1.KB229025            3044492 0 +   4816872 C
e canFam3.chr17                 57849854 0 -  64289059 C
e felCat8.chrA3                134117689 0 + 140925898 C
e ornAna1.Contig53964                668 0 -      2070 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221220               3809684 0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH737491                500500 0 -    628740 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e sarHar1.chr1_GL834688_random    539807 0 +   3395230 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929605                579960 0 +   1015623 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736 1 +    779542 I
e pelSin1.JH207189               1424965 0 +   1874153 I
e calJac3.chr14                 99353111 3 + 108792865 I
e melUnd1.JH556573                751858 2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e dasNov3.JH567436               1050202 7 -   2788317 I
e equCab2.chr15                 84045616 0 +  91571448 C
e triMan1.JH594629               9979543 0 +  24341844 C
e loxAfr3.scaffold_20           27632949 0 -  46401353 C
e pteAle1.KB030580              19419947 0 -  23789964 C
e cerSim1.JH767782               6826701 0 -  14545593 C
e orcOrc1.KB316907              10851391 0 +  17242564 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21198884 0 -  23169006 C
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-44806.000000
s hg38.chr8_KI270814v1_alt         91511 94 +    141812 TAACTCAGGCACCTATACTTCTAtttttttgttttttgttttgttttgagtcagggtctcgctgtgtcacccaggcagaagtgtagtggcatga
s ponAbe2.chr8                  59061005 83 + 153482349 TAAC-----------TACTTCTAtttttttgcttttttttttggtttgagtcagggtctcgctgtgtcatccagatggaagtgtagtggcatga
i ponAbe2.chr8                 C 0 M 168
s equCab2.chr15                 84045616  4 +  91571448 ---------------------------------------------------------------------------------TGC------A---
i equCab2.chr15                C 0 C 0
s felCat8.chrA3                134117689  9 + 140925898 ---------------------------------------------------------------------------------TGT-GTGCCA---
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57849854  1 -  64289059 ------------------------------------------------------------------------------------------C---
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13621962  1 -  19722643 ------------------------------------------------------------------------------------------A---
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3044492  1 +   4816872 ------------------------------------------------------------------------------------------A---
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19419947 31 -  23789964 -----------------------------------------------GGGGCGGGGGGGCG------------GACAGCAGCGC-GGAAGA---
i pteAle1.KB030580             C 0 C 0
e vicPac2.KB632437              19221422  0 -  22931326 C
e camFer1.KB017763               2815424  0 -   6207710 C
e ornAna1.Contig53964                668  0 -      2070 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221220               3809684  0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH737491                500500  0 -    628740 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e sarHar1.chr1_GL834688_random    539807  0 +   3395230 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e calJac3.chr14                 99353111  3 + 108792865 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e dasNov3.JH567436               1050202  7 -   2788317 I
e triMan1.JH594629               9979543  0 +  24341844 C
e loxAfr3.scaffold_20           27632949  0 -  46401353 C
e cerSim1.JH767782               6826701  0 -  14545593 C
e orcOrc1.KB316907              10851391  0 +  17242564 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21198884  0 -  23169006 C
e saiBol1.JH378126              24019711  1 +  27210278 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-8876.000000
s hg38.chr8_KI270814v1_alt         91605  5 +    141812 ccaca--------------------
s equCab2.chr15                 84045620  7 +  91571448 ATCCACA------------------
i equCab2.chr15                C 0 C 0
s felCat8.chrA3                134117698 11 + 140925898 TCCCAGGATTC--------------
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57849855 12 -  64289059 TTCCACAACTTC-------------
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13621963 25 -  19722643 TCCCACAGCCTCTCCTGACATGAAA
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3044493 21 +   4816872 TTCCACAGTGTCTCCAGAAGC----
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19419978  6 -  23789964 ACCCAG-------------------
i pteAle1.KB030580             C 0 C 0
e vicPac2.KB632437              19221422  0 -  22931326 C
e camFer1.KB017763               2815424  0 -   6207710 C
e ornAna1.Contig53964                668  0 -      2070 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221220               3809684  0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH737491                500500  0 -    628740 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e sarHar1.chr1_GL834688_random    539807  0 +   3395230 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e calJac3.chr14                 99353111  3 + 108792865 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e dasNov3.JH567436               1050202  7 -   2788317 I
e triMan1.JH594629               9979543  0 +  24341844 C
e loxAfr3.scaffold_20           27632949  0 -  46401353 C
e cerSim1.JH767782               6826701  0 -  14545593 C
e orcOrc1.KB316907              10851391  0 +  17242564 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21198884  0 -  23169006 C
e saiBol1.JH378126              24019711  1 +  27210278 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e ponAbe2.chr8                  59061088 168 + 153482349 M
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-424.000000
s hg38.chr8_KI270814v1_alt         91610 14 +    141812 gctcactgcagcct
s musFur1.GL896914              13621988  6 -  19722643 ----ACTACG----
i musFur1.GL896914             C 0 C 0
s pteAle1.KB030580              19419984 14 -  23789964 GATTCCTGCAATCC
i pteAle1.KB030580             C 0 C 0
e vicPac2.KB632437              19221422  0 -  22931326 C
e camFer1.KB017763               2815424  0 -   6207710 C
e odoRosDiv1.KB229025            3044514  0 +   4816872 C
e canFam3.chr17                 57849867  0 -  64289059 C
e felCat8.chrA3                134117709  0 + 140925898 C
e ornAna1.Contig53964                668  0 -      2070 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221220               3809684  0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH737491                500500  0 -    628740 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e sarHar1.chr1_GL834688_random    539807  0 +   3395230 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e calJac3.chr14                 99353111  3 + 108792865 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e dasNov3.JH567436               1050202  7 -   2788317 I
e equCab2.chr15                 84045627  0 +  91571448 C
e triMan1.JH594629               9979543  0 +  24341844 C
e loxAfr3.scaffold_20           27632949  0 -  46401353 C
e cerSim1.JH767782               6826701  0 -  14545593 C
e orcOrc1.KB316907              10851391  0 +  17242564 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21198884  0 -  23169006 C
e saiBol1.JH378126              24019711  1 +  27210278 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e ponAbe2.chr8                  59061088 168 + 153482349 M
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-6301.000000
s hg38.chr8_KI270814v1_alt         91624 49 +    141812 caacttcctgggctcgagtgattctgctaccttggtctcccaaagttct
s cerSim1.JH767782               6826701  7 -  14545593 -----------------------------------------CAACTTC-
i cerSim1.JH767782             C 0 C 0
s musFur1.GL896914              13621994 27 -  19722643 ----------------------CCATCAACCAGGGTGTTTCAAACTTCT
i musFur1.GL896914             C 0 C 0
s pteAle1.KB030580              19419998  3 -  23789964 ----------------------------------------CCA------
i pteAle1.KB030580             C 0 C 0
e vicPac2.KB632437              19221422  0 -  22931326 C
e camFer1.KB017763               2815424  0 -   6207710 C
e odoRosDiv1.KB229025            3044514  0 +   4816872 C
e canFam3.chr17                 57849867  0 -  64289059 C
e felCat8.chrA3                134117709  0 + 140925898 C
e ornAna1.Contig53964                668  0 -      2070 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221220               3809684  0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH737491                500500  0 -    628740 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e sarHar1.chr1_GL834688_random    539807  0 +   3395230 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e calJac3.chr14                 99353111  3 + 108792865 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e dasNov3.JH567436               1050202  7 -   2788317 I
e equCab2.chr15                 84045627  0 +  91571448 C
e triMan1.JH594629               9979543  0 +  24341844 C
e loxAfr3.scaffold_20           27632949  0 -  46401353 C
e orcOrc1.KB316907              10851391  0 +  17242564 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21198884  0 -  23169006 C
e saiBol1.JH378126              24019711  1 +  27210278 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e ponAbe2.chr8                  59061088 168 + 153482349 M
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=0.000000
s hg38.chr8_KI270814v1_alt         91673 3 +    141812 ggg
e musFur1.GL896914              13622021 0 -  19722643 C
e vicPac2.KB632437              19221422 0 -  22931326 C
e camFer1.KB017763               2815424 0 -   6207710 C
e odoRosDiv1.KB229025            3044514 0 +   4816872 C
e canFam3.chr17                 57849867 0 -  64289059 C
e felCat8.chrA3                134117709 0 + 140925898 C
e ornAna1.Contig53964                668 0 -      2070 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221220               3809684 0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH737491                500500 0 -    628740 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e sarHar1.chr1_GL834688_random    539807 0 +   3395230 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929605                579960 0 +   1015623 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736 1 +    779542 I
e pelSin1.JH207189               1424965 0 +   1874153 I
e calJac3.chr14                 99353111 3 + 108792865 I
e melUnd1.JH556573                751858 2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e dasNov3.JH567436               1050202 7 -   2788317 I
e equCab2.chr15                 84045627 0 +  91571448 C
e triMan1.JH594629               9979543 0 +  24341844 C
e loxAfr3.scaffold_20           27632949 0 -  46401353 C
e pteAle1.KB030580              19420001 0 -  23789964 C
e cerSim1.JH767782               6826708 0 -  14545593 C
e orcOrc1.KB316907              10851391 0 +  17242564 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21198884 0 -  23169006 C
e saiBol1.JH378126              24019711 1 +  27210278 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e ponAbe2.chr8                  59061088 168 + 153482349 M
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=92.000000
s hg38.chr8_KI270814v1_alt         91676 7 +    141812 actacag
s loxAfr3.scaffold_20           27632949 7 -  46401353 AGCACAC
i loxAfr3.scaffold_20          C 0 C 0
e musFur1.GL896914              13622021 0 -  19722643 C
e vicPac2.KB632437              19221422 0 -  22931326 C
e camFer1.KB017763               2815424 0 -   6207710 C
e odoRosDiv1.KB229025            3044514 0 +   4816872 C
e canFam3.chr17                 57849867 0 -  64289059 C
e felCat8.chrA3                134117709 0 + 140925898 C
e ornAna1.Contig53964                668 0 -      2070 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221220               3809684 0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH737491                500500 0 -    628740 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e sarHar1.chr1_GL834688_random    539807 0 +   3395230 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929605                579960 0 +   1015623 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736 1 +    779542 I
e pelSin1.JH207189               1424965 0 +   1874153 I
e calJac3.chr14                 99353111 3 + 108792865 I
e melUnd1.JH556573                751858 2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e dasNov3.JH567436               1050202 7 -   2788317 I
e equCab2.chr15                 84045627 0 +  91571448 C
e triMan1.JH594629               9979543 0 +  24341844 C
e pteAle1.KB030580              19420001 0 -  23789964 C
e cerSim1.JH767782               6826708 0 -  14545593 C
e orcOrc1.KB316907              10851391 0 +  17242564 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21198884 0 -  23169006 C
e saiBol1.JH378126              24019711 1 +  27210278 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e ponAbe2.chr8                  59061088 168 + 153482349 M
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-609.000000
s hg38.chr8_KI270814v1_alt         91683 8 +    141812 --acgtgacc
s otoGar3.GL873541              21198884 3 -  23169006 --ACG-----
i otoGar3.GL873541             C 0 C 0
s loxAfr3.scaffold_20           27632956 5 -  46401353 GCATG-----
i loxAfr3.scaffold_20          C 0 C 0
e musFur1.GL896914              13622021 0 -  19722643 C
e vicPac2.KB632437              19221422 0 -  22931326 C
e camFer1.KB017763               2815424 0 -   6207710 C
e odoRosDiv1.KB229025            3044514 0 +   4816872 C
e canFam3.chr17                 57849867 0 -  64289059 C
e felCat8.chrA3                134117709 0 + 140925898 C
e ornAna1.Contig53964                668 0 -      2070 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221220               3809684 0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH737491                500500 0 -    628740 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e sarHar1.chr1_GL834688_random    539807 0 +   3395230 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929605                579960 0 +   1015623 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736 1 +    779542 I
e pelSin1.JH207189               1424965 0 +   1874153 I
e calJac3.chr14                 99353111 3 + 108792865 I
e melUnd1.JH556573                751858 2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e dasNov3.JH567436               1050202 7 -   2788317 I
e equCab2.chr15                 84045627 0 +  91571448 C
e triMan1.JH594629               9979543 0 +  24341844 C
e pteAle1.KB030580              19420001 0 -  23789964 C
e cerSim1.JH767782               6826708 0 -  14545593 C
e orcOrc1.KB316907              10851391 0 +  17242564 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e saiBol1.JH378126              24019711 1 +  27210278 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e ponAbe2.chr8                  59061088 168 + 153482349 M
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=252.000000
s hg38.chr8_KI270814v1_alt         91691 11 +    141812 actgcacttgg
s triMan1.JH594629               9979543 11 +  24341844 AATGCACCCAT
i triMan1.JH594629             C 0 C 0
e musFur1.GL896914              13622021  0 -  19722643 C
e vicPac2.KB632437              19221422  0 -  22931326 C
e camFer1.KB017763               2815424  0 -   6207710 C
e odoRosDiv1.KB229025            3044514  0 +   4816872 C
e canFam3.chr17                 57849867  0 -  64289059 C
e felCat8.chrA3                134117709  0 + 140925898 C
e ornAna1.Contig53964                668  0 -      2070 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221220               3809684  0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH737491                500500  0 -    628740 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e sarHar1.chr1_GL834688_random    539807  0 +   3395230 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e calJac3.chr14                 99353111  3 + 108792865 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e dasNov3.JH567436               1050202  7 -   2788317 I
e equCab2.chr15                 84045627  0 +  91571448 C
e loxAfr3.scaffold_20           27632961  0 -  46401353 C
e pteAle1.KB030580              19420001  0 -  23789964 C
e cerSim1.JH767782               6826708  0 -  14545593 C
e orcOrc1.KB316907              10851391  0 +  17242564 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21198887  0 -  23169006 C
e saiBol1.JH378126              24019711  1 +  27210278 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e ponAbe2.chr8                  59061088 168 + 153482349 M
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=976.000000
s hg38.chr8_KI270814v1_alt         91702 3 +    141812 cca
s orcOrc1.KB316907              10851391 3 +  17242564 TCA
i orcOrc1.KB316907             C 0 C 0
s loxAfr3.scaffold_20           27632961 2 -  46401353 -CG
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9979554 3 +  24341844 GCA
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1050209 3 -   2788317 CCA
i dasNov3.JH567436             I 7 C 0
e musFur1.GL896914              13622021 0 -  19722643 C
e vicPac2.KB632437              19221422 0 -  22931326 C
e camFer1.KB017763               2815424 0 -   6207710 C
e odoRosDiv1.KB229025            3044514 0 +   4816872 C
e canFam3.chr17                 57849867 0 -  64289059 C
e felCat8.chrA3                134117709 0 + 140925898 C
e ornAna1.Contig53964                668 0 -      2070 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221220               3809684 0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH737491                500500 0 -    628740 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e sarHar1.chr1_GL834688_random    539807 0 +   3395230 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929605                579960 0 +   1015623 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736 1 +    779542 I
e pelSin1.JH207189               1424965 0 +   1874153 I
e calJac3.chr14                 99353111 3 + 108792865 I
e melUnd1.JH556573                751858 2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e equCab2.chr15                 84045627 0 +  91571448 C
e pteAle1.KB030580              19420001 0 -  23789964 C
e cerSim1.JH767782               6826708 0 -  14545593 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21198887 0 -  23169006 C
e saiBol1.JH378126              24019711 1 +  27210278 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e ponAbe2.chr8                  59061088 168 + 153482349 M
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=10494.000000
s hg38.chr8_KI270814v1_alt         91705 7 +    141812 aCTCATG
s vicPac2.KB632437              19221422 7 -  22931326 ACCCATA
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2815424 7 -   6207710 ACCCATA
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10851394 7 +  17242564 ATCCACA
i orcOrc1.KB316907             C 0 C 0
s felCat8.chrA3                134117709 4 + 140925898 ---CACA
i felCat8.chrA3                C 0 C 0
s loxAfr3.scaffold_20           27632963 7 -  46401353 ACCCACA
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9979557 7 +  24341844 ACCCACA
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1050212 7 -   2788317 GTCCACA
i dasNov3.JH567436             C 0 C 0
e musFur1.GL896914              13622021 0 -  19722643 C
e odoRosDiv1.KB229025            3044514 0 +   4816872 C
e canFam3.chr17                 57849867 0 -  64289059 C
e ornAna1.Contig53964                668 0 -      2070 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221220               3809684 0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH737491                500500 0 -    628740 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e sarHar1.chr1_GL834688_random    539807 0 +   3395230 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929605                579960 0 +   1015623 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736 1 +    779542 I
e pelSin1.JH207189               1424965 0 +   1874153 I
e calJac3.chr14                 99353111 3 + 108792865 I
e melUnd1.JH556573                751858 2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e equCab2.chr15                 84045627 0 +  91571448 C
e pteAle1.KB030580              19420001 0 -  23789964 C
e cerSim1.JH767782               6826708 0 -  14545593 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21198887 0 -  23169006 C
e saiBol1.JH378126              24019711 1 +  27210278 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e ponAbe2.chr8                  59061088 168 + 153482349 M
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=11057.000000
s hg38.chr8_KI270814v1_alt         91712 3 +    141812 ACT
s calJac3.chr14                 99353114 3 + 108792865 ACT
i calJac3.chr14                I 3 C 0
s saiBol1.JH378126              24019712 3 +  27210278 ACT
i saiBol1.JH378126             I 1 C 0
s otoGar3.GL873541              21198887 1 -  23169006 --T
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19221429 3 -  22931326 ACT
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2815431 3 -   6207710 ACT
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10851401 3 +  17242564 GCT
i orcOrc1.KB316907             C 0 C 0
s felCat8.chrA3                134117713 3 + 140925898 ACT
i felCat8.chrA3                C 0 C 0
s loxAfr3.scaffold_20           27632970 3 -  46401353 ACT
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9979564 3 +  24341844 ACT
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1050219 3 -   2788317 GCT
i dasNov3.JH567436             C 0 C 0
e musFur1.GL896914              13622021 0 -  19722643 C
e odoRosDiv1.KB229025            3044514 0 +   4816872 C
e canFam3.chr17                 57849867 0 -  64289059 C
e ornAna1.Contig53964                668 0 -      2070 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221220               3809684 0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH737491                500500 0 -    628740 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e sarHar1.chr1_GL834688_random    539807 0 +   3395230 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929605                579960 0 +   1015623 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736 1 +    779542 I
e pelSin1.JH207189               1424965 0 +   1874153 I
e melUnd1.JH556573                751858 2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e equCab2.chr15                 84045627 0 +  91571448 C
e pteAle1.KB030580              19420001 0 -  23789964 C
e cerSim1.JH767782               6826708 0 -  14545593 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e ponAbe2.chr8                  59061088 168 + 153482349 M
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=273345.000000
s hg38.chr8_KI270814v1_alt         91715 63 +    141812 ACTTCTAAA------ACCCATA--TGATGGTGAAACATTTACTGAAATGTTTAATGAAAGA---------TTTTTCA-----TGT-----
s calJac3.chr14                 99353117 74 + 108792865 ACTTCTAAA------ACTGG-A--TGATGGT-AAACATTTACTGAAGCCATCAACCAGAAATCAAAGTACTTTTTAAAA-TTTAT-----
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24019715 75 +  27210278 ACTTCTAAA------ACTGA-A--TGATGGTAAAACATTTACTGAAGCCATCAACCAGAAATGAAAGTACTTTTTCAAA-TTTAT-----
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21198888 77 -  23169006 ACTTCCAAA------ACGCATG--TGATGTTAAAATATTTAGTGAAGCCATCAACCAGGAGTGAAATCACTTTTTGAAATTTTAT-----
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19221432 70 -  22931326 TCTTCAAAA------ACCCACAAGTGATGTTAAAATGT----TCAAGCCACCCACCAAAAATGAAAGCATCTTTTCAAA-C---------
i vicPac2.KB632437             C 0 I 4
s camFer1.KB017763               2815434 70 -   6207710 TCTTCAAAA------ACCCACAAGTGATGTTAAAATGT----TCAAGCCACCCACCAAAAATGAAAGCACCTTTTCAAA-C---------
i camFer1.KB017763             C 0 I 4
s orcOrc1.KB316907              10851404 72 +  17242564 TCTTCTAAA------ACCCACA--TGATGTTAAAATGCTTAGTTAAGCCACCCACCGAAAACGAAAGCAGCTTTTCGAA-T---------
i orcOrc1.KB316907             C 0 I 4
s equCab2.chr15                 84045627 72 +  91571448 ACTTCTAAA------AACCACA--GGATGCTAAAATATTTAGTTAAGCCATGAACCAAAAATAAAAGCATCTTTTCAAA-T---------
i equCab2.chr15                C 0 I 4
s cerSim1.JH767782               6826708 70 -  14545593 --TTCTAAA------AACCACA--TGACGTTAAAATATTTAGTTAAGCCATCAACGAAAAATAAAAGCATCTTTTCAAA-T---------
i cerSim1.JH767782             C 0 I 4
s felCat8.chrA3                134117716 65 + 140925898 TCTCCTGAA------GCCCACA--TGCTGTGAAAG-------TTAAGCCATCGACCAAAAATGAAAGCACCCTTTCAAA-C---------
i felCat8.chrA3                C 0 I 4
s canFam3.chr17                 57849867 62 -  64289059 ---TCCGAA------GCCCACA--TGATGTGAAAA-------TTAAGCCACTAACCAAAAATGAAAGCACCTTTTCAAA-C---------
i canFam3.chr17                C 0 I 4
s odoRosDiv1.KB229025            3044514 54 +   4816872 -----------------CCACG--GCACATGAAAA-------TGAAGTCATCAACCAAAAATGAAAGCACCTTTTCAAA-C---------
i odoRosDiv1.KB229025          C 0 I 4
s pteAle1.KB030580              19420001 72 -  23789964 ACTTCTAAA------AACCACA--CGATGGTAAAGTGTTTCATTAAGCCATCGACGAAAAATGAAAGCACCTTTTCAAG-T---------
i pteAle1.KB030580             C 0 I 6
s loxAfr3.scaffold_20           27632973 77 -  46401353 TCTTCTAAA------ACCCATA--AGATGTTAAAACGTTTAATTAAGCCATCAACCAAAAATGAAAGCACTTTTTCAAA-T----TTTAT
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9979567 49 +  24341844 TCTTCTAAA------ACCCATC--AGG----------------------------CAAAAATGAAAGCACTTTTCCAAA-T----TTTAT
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1050222 83 -   2788317 TCTTCTAAAACCCATACCCATA--GGATGTTAAAATGTTTAGTTAAGCCATCAACCAAAAATGAAAGCACTTTTTCAAA-T----TTTAT
i dasNov3.JH567436             C 0 C 0
e musFur1.GL896914              13622021  0 -  19722643 C
e ornAna1.Contig53964                668  0 -      2070 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221220               3809684  0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH737491                500500  0 -    628740 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e sarHar1.chr1_GL834688_random    539807  0 +   3395230 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e ponAbe2.chr8                  59061088 168 + 153482349 M
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=90607.000000
s hg38.chr8_KI270814v1_alt         91778 11 +    141812 TACCTCCAAAA
s calJac3.chr14                 99353191 11 + 108792865 TACTTCCAAGA
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24019790 11 +  27210278 TACTTCCAAGA
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21198965 11 -  23169006 TACCTCCAAAA
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19221506 11 -  22931326 TACCTCCCAGA
i vicPac2.KB632437             I 4 C 0
s camFer1.KB017763               2815508 11 -   6207710 TACCTCCCAGA
i camFer1.KB017763             I 4 C 0
s orcOrc1.KB316907              10851480 11 +  17242564 TGCCTCCGAGA
i orcOrc1.KB316907             I 4 C 0
s equCab2.chr15                 84045703 11 +  91571448 TACCTCCAAGA
i equCab2.chr15                I 4 C 0
s cerSim1.JH767782               6826782 11 -  14545593 TACCTTGGAGA
i cerSim1.JH767782             I 4 C 0
s felCat8.chrA3                134117785 11 + 140925898 TACCTCCTAGA
i felCat8.chrA3                I 4 C 0
s canFam3.chr17                 57849933 11 -  64289059 TACTTCCTAGA
i canFam3.chr17                I 4 C 0
s musFur1.GL896914              13622021 11 -  19722643 TGCCTCCTAGA
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3044572 11 +   4816872 TGCCTCCTAGA
i odoRosDiv1.KB229025          I 4 C 0
s pteAle1.KB030580              19420079 11 -  23789964 CACCTCCTAGA
i pteAle1.KB030580             I 6 C 0
s loxAfr3.scaffold_20           27633050 11 -  46401353 TAGCTCCAAGA
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9979616 11 +  24341844 TACCTCCAAGA
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1050305 11 -   2788317 TACATCCACAA
i dasNov3.JH567436             C 0 C 0
e ornAna1.Contig53964                668  0 -      2070 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221220               3809684  0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH737491                500500  0 -    628740 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e sarHar1.chr1_GL834688_random    539807  0 +   3395230 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e ponAbe2.chr8                  59061088 168 + 153482349 M
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=239225.000000
s hg38.chr8_KI270814v1_alt         91789 247 +    141812 ATCCAAATTTAGAAAGTATTTGCTCTGGA--CTCAGA----CCTTCGGCACCCTAAGTGTC----TATTTCATCAA-GGAT---AAGAGTCAGAAGCACTTGAC----------------------------CCAGGCTGTCCTCC--AGGcactggttctc--agtgtggctcctaaccagcaaggccagcattactaggaaacacgtaagaaatgcaaaatcttgggacttatcccagatctgtagaatcagaaactctt-cgggagcttaataggtgtgggctattaagct-----------------
s ponAbe2.chr8                  59061256 251 + 153482349 ATCCAAATTTAGAAAGTATTTGCTCTGGA--CTCAGAGAGACCTTTGGCACCCTAAGTCTC----TATTTCATCAA-GGAT---AAGAGTTGGAAGCACTCGAC----------------------------CCAGGCTGTCCTCC--GGGcactggttctc--agtgtggctcctaaccagcaaggccagcattactaggaaacacgcctaaaaagcaaaatcttgggacttatcccaaatctgtagaatcagaaactctt-ggggagcttaataggtgtgggctaacaaacc-----------------
i ponAbe2.chr8                 M 168 I 4
s calJac3.chr14                 99353202 246 + 108792865 ATCCAGGTTTAGGAAATA---GCACTAACCTCTCCGTGGGACCTGGGGCACCTGAAGTCTC----CATCTCAACAA-GGGT---AAGAGTCGGAAGCACTGGAC----------------------------CCAGGCTGTCCTTA--AGAcagcagttctc--agtgcggctcctgaccagcaaggccagcatgactacgaagca----agaaataaaaaaccctgggccctaccccaggcctgtgaaatcaaatacactc-agggagtccaacaggtgtggtctatcaagcc-----------------
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24019801 244 +  27210278 ATCCAGGTTTAGGAAGTA---GCACTAAC--CTCCGTGGGACCTGGGGCACCTGAAGTCTC----CACCTCAGTAA-GGGT---GAGAGTCGGAAGCACTGGAC----------------------------CCAGGCTGTCCTCC--GGGcagtagctgtc--ggtgcggctcctgaccagcaaggccagcatgactaggaaaca----agaaat-aaaaatcctgggccctaccccagacctgtgaaataaaaaactcttgggggagtccaacaggtgtggtctaacaagcc-----------------
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21198976 194 -  23169006 ATCCA-----AGAAAGTACTTTCTCTGGC--CTCAGTTAGAGCTTGGCACCCCTAAGTCTC----AATCTCCCTGA-GGGT---AAAAGTCAAAAACACTGG-C----------------------------CTGGGCTGGCTGCC--------------------------------ccagca--gtcagcgctaccaggaaacatactagaaac-cagagtctcaagctctacccggtccctgtggaattataaactctg--------------ggtgtgg-------agcc-----------------
i otoGar3.GL873541             C 0 I 1
s vicPac2.KB632437              19221517 154 -  22931326 ACCCGAGGTTGGAAGACGCTTG-GCCGGC--CTCCTCGAGGCCTTGGTGCCCTG--GCCTC----AATCT---CAA-GGG----AGGAACTGGAAGCAGTTTAC----------------------------C-CGGCTGTCCTCT-AGGGCAGC-------------TGGTTCCCGACCATCCAGGTCAGCATCACCGGGGAACTTACT--------------------------------------------------------------------------------Cgcc-----------------
i vicPac2.KB632437             C 0 I 1
s camFer1.KB017763               2815519 154 -   6207710 ACCCGAGGTTGGAAGACGCTTG-GCCAGC--CTCCTCGAGGCCTTGGTGCCCTG--GCCGC----AATCT---CAA-GGG----AGGAACTGGAAGCAGTTTAC----------------------------C-AGGCTGTCCTCT-AGGGCAGC-------------TGGTTCCCGACCATCCAGGTCAGCATCACCGGGGAATTTACT--------------------------------------------------------------------------------Cgcc-----------------
i camFer1.KB017763             C 0 I 1
s orcOrc1.KB316907              10851491 165 +  17242564 ATTCGAGGTTG---GATACTTG---TGTC--CTCAGCCAGGCCCAGGAGCCCTG--GCCTC----AGGCTCCCCAG-GGG----AGGAGTCAGAAGC----------------------------------------------------GGCTGC-------------tggttccagaccaacgaggtcagtgtcaccagggaactgattagaaatgcgaa------------------------tGG-ATCAGGAACTCTG--------------GGAAACGG------CTCC-----------------
i orcOrc1.KB316907             C 0 I 1
s equCab2.chr15                 84045714 220 +  91571448 ATCCGAGGTTAGGAGGTATTTG--CTGGC--ATCAGCTGGACCCTGGCACCCTG--GCCTC----AATCTCCCCAG-GGGG---AAGCGTCGGAAGCACTGCACCAGTATACTCTACATGTACGTGTGTATAC-AGACAGTCCTCC-AGAGCAGC-------------TGATTCCTCACCATCGAGGGcagcatccctggggaactcaccagaaatgcaaa------------------------tagaatcagaaactctc--------------agaatgg-------cgcc-----------------
i equCab2.chr15                C 0 I 1
s cerSim1.JH767782               6826793 175 -  14545593 ATCCGAGGTTAGAAGGTATTTG--CTGGC--CTCAGCTAGCACCCGAC----------------------TCTCAG-GGGT---GAGAGTCGGAAGCACTTCAC----------------------------C-TGACTGTCCTCC-GGGGCAGC-------------TGGTTCCT-ACCATTCAGGtcagcattcccagggaacttattagaaatgcaaa------------------------tggaatcagaaactctg--------------agaatgg-------cacc-----------------
i cerSim1.JH767782             C 0 I 1
s felCat8.chrA3                134117796 170 + 140925898 ATGCAAGGTTGGGAGATCCTTG--CTGGG--CTCACAGAGGCCCAAGCATCAGT--GTCCC------TCTTCTTGG-GGGTAAGAAGCCTCACAGGCACTTCAC----------------------------C-----------CC------------------------Gctcctgaccggcgaggtcagcattacagggaaacttatcagacatgcaca------------------------tac--tcaggAACTCTC--------------AGAACGG--------GCC-----------------
i felCat8.chrA3                C 0 I 1
s canFam3.chr17                 57849944 178 -  64289059 ATCCAAGGCTGGGAGATACTTG--CTGGC--CGC-----------AGCATCACT--GTCTT----CATCTCTGGGGCAGGT---AAGCCTCGGAGGCACCTTAC----------------------------C-AGGCTgtcctct-acagtagc-------------tggctcctaaccagtgaggtcagcatcatgaggaaacttcttagagatgcaca------------------------tgg--tta-gacccctg--------------ggaatgg--------gcc-----------------
i canFam3.chr17                C 0 I 1
s musFur1.GL896914              13622032 188 -  19722643 ATCCAAGGATGGGAGATACTTG--CGAGC--CCCAGCGAGGCCTGAGCATTACC--GTCCC----CGTCTCCCTGG-GGGT---CAGCCTCGGAGGCACCTCAC----------------------------C--GGCTGTCCTCT-ACGATGgt-------------cggctcctgactggtgacatcagcatcactgggaaactcagcagaggtgcaca------------------------tGG--ttaggaactctg--------------agaacag--------gcc-----------------
i musFur1.GL896914             C 0 I 1
s odoRosDiv1.KB229025            3044583 175 +   4816872 ATCCAAGGCTGGGAGATACCTG--AGGGC--CTCAGTGAGGCCCAAGCATCACC--ATCTC----CATGTCCCTGG-GGGT---AAGCCT------CACCT----------------------------------GGCTGTCCTCTAATGGTAGC-------------CAGCTCTTGC----TGAGGTCAGCGTCACGGGGAAACTTTGTAGAGGTGCACA------------------------TGG--ttaggaactctg--------------ggaatgg--------gcc-----------------
i odoRosDiv1.KB229025          C 0 I 1
s pteAle1.KB030580              19420090 158 -  23789964 ATCCAAGGTTAGAAGGTACTTG--CTGGC--CTCAGCTAGA-CCGGGCACCCTG--ACGTCAATCAATCTCCCCAA-G------ATGAGTCGGAAGCACCCCAG----------------------------C-CGGCCTTTACCT-AGGGCAGC-------------AGGTTCCTGACCCCCA--------------------------------GCAAA------------------------TGGAATTGAAGGCCCTG--------------GGAACAG---------CC-----------------
i pteAle1.KB030580             C 0 I 1
s loxAfr3.scaffold_20           27633061 248 -  46401353 ATCCAAGGTTAGAAAATA-TTGTTCTGGC--CTCAGCTAGACCCTGGCAGCCCAA-GTCTC----TATTTCCCCGA-TAAT---AAGAATCAGAAGCACTTAGC----------------------------CCAGGCTTTCCACT-AGGGCA-CAgttctcaaaacatggtccctgaccagcagcaccagcattacttgagaacttgttagaaatgcaaactcttgagccttaacccagacccaaggaagctgaaactttg--------------ggagtga-------aacccaacaatgtgtgggcta
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9979627 249 +  24341844 ATCCAAGGCTAGAAAATATTTGCTCTGGC--CTCAGCTAGACCCTGGCAGCCTGA--TCTC----AATTTCCCTGA-GAGT---AAGAATCAGGAGCACTTAGT----------------------------CCAGGTTATCCTCT-AGGGcagcggttctcaaagtgtggtcctggaccagcagcatcagcattactcaggaacttgatagagaagcaaattttggggccttaccccagacctatggaatcagaaactttg--------------ggagtga-------agcccaacaatgcctgggcta
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1050316 234 -   2788317 ATCCAAGGTTAGAAAATATCTGTTCTGGC--CTTAGCTAGACCATGGATACCTTACATTTC----CATTTCCCCAA-GGGT---AAGAA-CAG-----------------------------------------AGGTTATCCTCT-AAGGcagtagttgtccaagtatggtccctgaacagcaatatcagcat--cttgggaatttatgagaaatgcatattctcagcctctacctgagacttatggaatcagaaactttg--------------ggaggga-------agcccaa-actgtgtgatcta
i dasNov3.JH567436             C 0 C 0
e ornAna1.Contig53964                668   0 -      2070 I
e tetNig2.chr10                  6379385   0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382   0 -   6649201 I
e hapBur1.JH425491                252157   0 -   1273513 I
e neoBri1.JH422308               3491820   0 -   5414369 I
e araMac1.AOUJ01470298               637   0 -       895 I
e takFla1.AOOT01113665               306   0 +       323 I
e fr3.HE591725                    289786   0 -    411779 I
e ficAlb2.chr2                 148476508   0 + 157563209 I
e anoCar2.chr1                 148577473   4 + 263920458 I
e pseHum1.KB221220               3809684   0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214   0 -  25666195 I
e allMis1.JH737491                500500   0 -    628740 I
e falPer1.KB390952               2753956   0 -  18327016 I
e falChe1.KB397350               1707310   0 -   3649919 I
e macEug2.GL109592                105897   0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802   0 +   2102797 I
e sarHar1.chr1_GL834688_random    539807   0 +   3395230 I
e melGal1.chr7                  34310641   0 -  38723565 I
e anaPla1.KB742696               1254472   0 -   1270250 I
e amaVit1.AOCU01222764              1324   0 -      1397 I
e apaSpi1.KB929605                579960   0 +   1015623 I
e cheMyd1.KB605988                134509   0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736   1 +    779542 I
e pelSin1.JH207189               1424965   0 +   1874153 I
e melUnd1.JH556573                751858   2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-35041.000000
s hg38.chr8_KI270814v1_alt         92036 35 +    141812 taata--ggtggtgctg----atgcCTATTATAACCTTAAT
s calJac3.chr14                 99353448  5 + 108792865 ---------------------atgcc---------------
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24020045  5 +  27210278 ---------------------attca---------------
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21199171 24 -  23169006 aacaa--ggtggtctcgcgaactgcc---------------
i otoGar3.GL873541             I 1 I 1
s vicPac2.KB632437              19221672 26 -  22931326 aacagggagtgttctagcaaccctcc---------------
i vicPac2.KB632437             I 1 C 0
s camFer1.KB017763               2815674 26 -   6207710 aacagggagtgttctagcaaccctcc---------------
i camFer1.KB017763             I 1 C 0
s orcOrc1.KB316907              10851657 26 +  17242564 AACAGGGAGGGTTCTAGCAACCTGCC---------------
i orcOrc1.KB316907             I 1 C 0
s equCab2.chr15                 84045935 25 +  91571448 acaaaggagtgttctaacag-cctcc---------------
i equCab2.chr15                I 1 C 0
s cerSim1.JH767782               6826969 26 -  14545593 aacaatgagtgttctaacaaccctcc---------------
i cerSim1.JH767782             I 1 C 0
s felCat8.chrA3                134117967 23 + 140925898 AACAA--AGTGTTCTCACAGCTGCC----------------
i felCat8.chrA3                I 1 C 0
s canFam3.chr17                 57850123 24 -  64289059 aaaca--agtgttctaacaactctct---------------
i canFam3.chr17                I 1 C 0
s musFur1.GL896914              13622221 24 -  19722643 aacaa--agtgttctaaccaccctcc---------------
i musFur1.GL896914             I 1 C 0
s odoRosDiv1.KB229025            3044759 24 +   4816872 aacct--agtgttttaacaaccctcc---------------
i odoRosDiv1.KB229025          I 1 C 0
s pteAle1.KB030580              19420249 20 -  23789964 AATAAGGGGTGGTGTGACAA---------------------
i pteAle1.KB030580             I 1 C 0
s loxAfr3.scaffold_20           27633309 11 -  46401353 ---------------acaaaccctgc---------------
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9979876 11 +  24341844 ---------------acagaccctcc---------------
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1050550 11 -   2788317 ---------------acaaattgtcc---------------
i dasNov3.JH567436             C 0 C 0
e ornAna1.Contig53964                668  0 -      2070 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221220               3809684  0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH737491                500500  0 -    628740 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e sarHar1.chr1_GL834688_random    539807  0 +   3395230 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e ponAbe2.chr8                  59061507  4 + 153482349 I
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=40591.000000
s hg38.chr8_KI270814v1_alt         92071 26 +    141812 AGGTGGTGCTGATGCCCTC--CACCTGG
s ponAbe2.chr8                  59061511 26 + 153482349 aggtggtgctgatgccctc--cagctgg
i ponAbe2.chr8                 I 4 C 0
s calJac3.chr14                 99353453 25 + 108792865 -ggtgatgctgatgccccc--tagttgg
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24020050 24 +  27210278 -ggtgatgctgatgccacc---agttgg
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21199196 26 -  23169006 agcggatactcatggacta--aagctag
i otoGar3.GL873541             I 1 C 0
s vicPac2.KB632437              19221698 28 -  22931326 aggtgctgctgcagctgcgctgaacttg
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2815700 28 -   6207710 aggtgctgctgcagctgcgctgaacttg
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10851683 13 +  17242564 CGGCGC---------------GAAGCTG
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84045960 26 +  91571448 aggtgctgctgatggagtg--aaggttg
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6826995 26 -  14545593 aggtgctactgatgcacta--aaatttg
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134117990 15 + 140925898 -----------CGGCACCC--GAGTCTG
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57850147 24 -  64289059 aggcatagt-gcggcacca--agg-ttg
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13622245 26 -  19722643 cggtgctgtcgctgcacca--aagtttg
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3044783 26 +   4816872 aggtgctgccgctacccca--aagtttg
i odoRosDiv1.KB229025          C 0 C 0
s loxAfr3.scaffold_20           27633320 26 -  46401353 agctgattctgatgcacta--aagcttt
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9979887 26 +  24341844 agctgattctcatgcacta--aagcttt
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1050561 26 -   2788317 aggtgatgctgaggcacta--aagtttg
i dasNov3.JH567436             C 0 C 0
e ornAna1.Contig53964                668  0 -      2070 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221220               3809684  0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH737491                500500  0 -    628740 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e sarHar1.chr1_GL834688_random    539807  0 +   3395230 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e pteAle1.KB030580              19420269  0 -  23789964 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=718307.000000
s hg38.chr8_KI270814v1_alt         92097 305 +    141812 AGAACCACAactctgtagggaaggtgtgga-gg----ccagga-------ctgtgcatttctaacaacttctgggtgctgcgggtgctgctggc-----ccagaggct-------gcactttg---aga---atttctg------ATCCTGAGcagtg-----------cttctcaagc--ttccctatgcccact-gtcgcctgggc-tctt-----------actgaagattttgg-----ctcagcaggcct---------------aaggaggctgattttctaagaagc-cccaggaaattccagtg--------------atgctCTCCAGGTGCAAGCCT-------------------GGGG----------TGCTGGTG-AAGC-AAA-CCTCATCCAAGCGTTTGC-AAGCTAGAACCTGGAATA
s ponAbe2.chr8                  59061537 305 + 153482349 agaactacAactctgtagggaaggtgtgga-gg----ccagga-------ctgtgcatttctaacaacttctgggtgctgcgggtgctgctggc-----ccagaggct-------acactttg---aga---atttctg------ATCCTGGGcagtg-----------cttttcaagc--ttccctgtgcccact-atcgcctgggc-tctt-----------actgaagattctgg-----ctcagcaggcct---------------aagggggctgattttctaagaagc-cccaggcaattccagtg--------------atgctCTCTGGGTGCAAGCCT-------------------GGGG----------TGCTGGTG-GAGC-AAA-CCCCATCCAAGCGTTTGC-AAGCTAGAACCTGGAATA
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99353478 240 + 108792865 agagccgcAACCCTGCAGGTGAGTTgtgga-gg----ccgggg-------ctgggcatttctaacaac-tccaggtgctgcccgtgcagctggc-----tc-----ct-------acacatta---aga--------------------------------------------------------------------------------------------------------TCTGG-----CTCCACAGGCCT--------------CAGGGAGGTCAGAATTCTAAGAAGC-CTCAGGAGATTCCAATG--------------ATACTCTT--GGTGCATGGCT-------------------GGGGCCCC-AAGGTTGCAAATG-GGGC-AAACCCCCACCCACATGCCTTCTAAGCTGAAACTTGTAGTA
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24020074 238 +  27210278 agagccgcAACCCTGCAGGTGAGTTgtgga-gg----ctgggg-------ctgtgcatttctatcaac-tccaggtgcta-ccatgcagctggc-----tc-----ct-------atacacta---aga--------------------------------------------------------------------------------------------------------acTGG-----CTCCGCAGGCCT--------------GAGGGAGGCTGGAATTCTAAGAAGC-CCCAGACGATTCCAATG--------------ATACTCTT--GGTGCATGGCC-------------------GGGGCCCC-AAGGGCGCCAATG-GGGC-AAG-CCCTGCCCACATGCCTTCTAAGCTGAAACCTGTAGTA
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21199222 309 -  23169006 agaacTGTAATTT---------GCTACtga-gg----ct--ga-------ctctgtatttctactaagttccaggcactg---------ctggt-----ccagagccc-------acac-ctg---agg---gccactg------CTCTACAGCA--G-----------CTTCTCAAGC--CTCCGTGTGCCCATTCATCACCTGGGG-CCCTTATGTACCTGAACAGAAGAGGGTGGGGGCACGCAGCAggccc--------------aggggagtctgaatttctaagaagg-cccaggcaattcccatg--------------ttgctCTGTGAGTGCGAGGCC-------------------AGGGCCTC-TGGGGTGCCAATG-AAGC-AAA-CTCTGT-TAAGTGCTCTGTAAACTAGGACCTGGATTA
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19221726 326 -  22931326 aggaccacgactcagcaggtatgg-gtggg-c-----cc-cga-------ctt-----tcccagcaaggtccaggtgctgctggtgcggccggc-----ccagggaca-------gcactttg---aga---accTCAG------CTCTGGGGcaatg-----------cttctcagac--tgatg-gtgctgactcacaccctgcgg---------------aaatggagattctgg-----ttcagcaggccccg-gggacaaggacctgggagtctgcatttctaagaatc-cccagg-GACTCTA-----------------------CCTGAGGGCCAGGCAAGGACTGTGAGGGCTAGACGAGGCTCCTGGGGGTGCAAATG-ACAT-AAA-CT--GTCCTGGTGCTTTGTAAGCTAGAATCTGTAATA
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2815728 326 -   6207710 aggaccacgactcagcaggtatgg-gcggg-c-----cc-cga-------ctt-----ccccaacaaggtccaggtgctgctggtgcggccggc-----ccagggacc-------gcactttg---aga---accTCAG------CTCTGGGGcaatg-----------cttctcagac--tgacg-gtgctgactcacaccctgcgg---------------aaatggagattctgg-----ttcagcaggcccag-gggacaaggacctgggagtctgcatttctaagaatc-cccagg-GACTCCA-----------------------CCTGAGGGCAAGGCAAGGACTGTGAGGGCTAGACGAGGCTCCTGGGGGTGCAAATG-ACAT-AAA-CT--GTCCTGGTGCTTTGTAAGCTAGAATCTGTAATA
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10851696 291 +  17242564 GGAATCGCCTTTAAGTAGGTGTGG-GTGTG-G-----CC-------------------TTTTAACAAGGTCCGGGTCCTGCTGGGGCTCCCGGT-----CC-------------------------------ACCTCTG------CTCTAGGGcaacg-----------cttctcagactttaatg-g-gctgactcgtgccctgggg---------------aaatggagattctgc-----ttcagcaggcctag-gggacaagggcctgggagcctgcatttctacgaggc-cccagatgaCTCCA-----------------------CCTGAGGGCAAGGCA---------------AGACTAGGACCCTAGGGAGGCAAATG-AAAC-AAA-CTACATCCAAGTGCTCTGTAAACCAGACTCGGGACTA
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84045986 320 +  91571448 agaacca-catccagttgggatggtgtggg-gc----ccatgg-------cttttc--ttctaacaagtttcaggtgatgctgg---tgctagt-----ccagggacc-------acacttt----aga---acccctg------CTCTAGGGcaatg-----------cttctcaaac--tttaatgtgccttttcacgctgtgggg-atcttatg-----aaaacggagattctgg-----ttcagtaggccaag-gggagaagggcctgggagtctgcatttctaagaagc-cccatgtgatTCCA------------------------CTGAGTGCAAGGCT-------------------AGGGCTCCTGGGGGCGCAAATG-AAAC-AAA-CTATGTCCAAGTGCTTTGTAAACTAGAATCTGGAATA
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6827021 325 -  14545593 agaacca-cattcagtagatatggtatggg-gc----ccatga-------tttttc--ttctaaaaagtgtca-gcgatgctggtgctgctagt-----ccagggacc-------acactttg---gga---acccctg------CTCTAGGGcaatg-----------cttctcaaac--tttaatgtgcctactcataccctgggg-atcttatg-----aaaatggagattctgg-----ttcaataggcctag-gagagaagggcctgggagtctgcatttctaagaagc-cccagatgatTCCA-----------------------CCTGAGTGcaaggtt-------------------agtgctcctgggggtgcaaatg-aaacaaaa-ttatgtccaagtgctttgtaaactagaaTCTGGAACA
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134118005 278 + 140925898 AGAACCACCattcagtaggtgcggcaaggg-g-----ctgtga-------ttttta--cttgaacgagttccaggtggtgccggtgctgctggg-----cccgggact-------gcacttgg---aga---acctctgGAGCACCTCTAGAGCAATG-----------CTTCTCCACC--TGT---GTGCCTACTTGTCCCTTGGGG-ACCTTAT-----------AAAGATCCTGG-----TTCTGCAGACCTAG-GGGACGAGGGCCTGGCAGTCTGCATCTCCAAGAGGC-CCCAGAGGATTCCA-----------------------CT------------------------------------------------------------------ATGTCTACATGTTCTGTAAACTGGAATCTGGGATA
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57850171 325 -  64289059 agaaccacCattcagcaggtgcagtgcggg-g-----ttgtga-------ttttta--ttctgatgagttccaggtgatgccagtgctgctgctgctgtccagggact-------acactgtg---aga---acctctg------CTTTAGATcaata-----------cttctcaatc--cctat-gtgcctactcatctcctggggaatcttatg-----aaaatgaagattctgg-----ttcagtaggtatag-gggagaagggcctgggagtctgcatctctaagatgc-cccacgtgatTCCA-----------------------CTTGAATGCAAGACT-------------------GGGGCTTCTAGGGGCATGGGTG-AAAC-A-----ACATCTAAATGCTCTGTGAACT-GAATCTGGGATA
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13622271 295 -  19722643 agaaccacCattcagcaggtgcagcgtggg-g-----ccgtga-------ttttta--ttctaacaagttccagatgatgcctgtgctgctggt------tgggaacc-------gcactttg---aga---actactg------CTCTAG-------------------------------ATTA-ATGCTT-CTCACCCTctgggg-atctaaca-----aaaaggaagattctgg-----tgcaggaggcct----ggagaagggcctgggagtctgcatctctaagaagc-cccaggtgatTCCA-----------------------CTGGAGT-CCAGGCT-------------------AGGGGCTCTGGGGGCAGGGATG-AGAC-A-----ATGTCTAAACACTCT-TCGAGTAGAATCTGAGACA
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3044809 287 +   4816872 agaaccacCattcagtaggtgtggcggggg-g-----ccgtga-------ttttta--ttctaacaagttcca-----------------------------gggact-------gcACTTTG---AGA---ACCTCTG------CTCTAG----Ctg-----------cttctcaaac--tgtag-gtgcctactcatcccctaggg-atcttat------gaagtgcagattctgg-----tgcagtaggcct----agagaagggcctgggagtctgcatctctaagaagc-cccaggtgattcca-----------------------cttgagt-caaggct-------------------agggcctctgGGGGCGGGGATG-ACAC-A-----ATGTCCAAATGCTTTGTAAACTAGAATCTGGGGTA
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19420269 301 -  23789964 ---ACCa----------ggtatggttcaag-gc----ccttga-------cttttc--ttctgacaagttccagatggcgctggggccgctggc-----ccag--acg-------gcacttcgCAACGA---ACCTCCG------CTCCAGGGCGCtg-----------cttctcagcc--ttacc-ctgaccactcatgccccgggg-agctcatg-----aaaatgaaggtcctgg-----ttcagtgggcctag-gggagaagggcccgggaggctgcatttct-agggga-ctcaggtgatTCCA-----------------------CCTGAGGGCAAGGAT-------------------AAGGCCCCCAGGGGTGCAAATG-AAAC-AAA-CTACGTC-----------CGAACCAGAATCTGGAACG
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27633346 338 -  46401353 agaaccacAACTTGgtaggtgtggtatggg-ac----ccatga-------gtttgtatttctagtaagctcca---------ggtgctgctcgt-----ctgggcacc-------gcactttg---aga---aactctg------TTC-----Aaatg-----------cttcccaaac--tttaaggtgcctgctcgttacctggga-atcttatt-----aaaagcaagattttga-----ttcagtcggtctag-gggaggacagcctgcaattctgcatttctaagatgttcccagatgactccaacaaccgtgatccaaggacactctttgagtgcaaggCT-------------------AGGGTTCCTGGGGGCACAAATG-AAAC-AAC-CCACGTCCAAAGGCTTTACAAACTAGAATCTGGAATA
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9979913 352 +  24341844 agaaccacAattcagtaagcatggtgtgggcac----ccatga-------atttgtatttcaagtaggttccaggtgctgctggtgctgctctt-----ctgggcaat-------gcactttg---aga---aactctg------TTCTAGAGcaatg-----------cttctcaaac--tttaaggtgcctgctcattacctgagg-atcttatt-----aaaag-aagattcaga-----ctcagtagatctag-gggagtagaacctgagattctacatttctaagacgttcctagatgattccagtgatgcagatccaaggatgccctttgagtacaaggCT-------------------agggttactaggggcacaaatg-aaac-aat-ccatgtccaagtgctctgcaaactagaatctggaata
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1050587 342 -   2788317 agaacAATAAAtcagtagttatggtgtggg-ga----ccgtga-------gtttttattccta-caagttccaggtgttgctggtcctgcttgt-----c--agcactttgatcagcactttg---aga---accactg------CTCTAGAAcaatg-----------cttctcaaac--ttgaacgtgccaactcatcacgtgaga-ctctcatc-----aggatgaagattctga-----ttcaataggtgtagagagaggacaacctgagagtcttcatttctaagaaacacccaggtgattccaatg--------cCAA--------TTCAAGATCAAGACT-------------------AGGGTTCCTGGGGGTGTAAAAGAAAAC-AAC-CTACATTTAAGTACTTGGTAAACTAGAATCTGCAATA
i dasNov3.JH567436             C 0 C 0
s xenTro7.KB021653              82492226 306 + 140444050 AGACCCAGAAGAAAGATGGGAAGAAGCGCA-GGAAGACAAGGAAGGAGAGTTACGC--CATTTACGTGTACAAGGTGCTG------AAGCAGGT---------------------GCACCCCG---ATACCGGCATCTC------CTCCAAGGCCATGAGCATCATGAACTCCTTTGTC--AACGATGTGTTTGAGCGCATCGCAGGG--------------GAAGCCTCCCGCCTGG-----CTCATTACAACAAG---------------------CGCTCCACCATCACCT-CCCGGGAGATCCAG-----------------------ACCGCGGTCC-GCCT-------------------GCTGCTGCCTGGGGAGCTGGCC-AAGC-ACG-CCGTGTCCGAGGGCACCA-AGGCTGTCACCAAGTACA
i xenTro7.KB021653             N 0 N 0
e ornAna1.Contig53964                668   0 -      2070 I
e tetNig2.chr10                  6379385   0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382   0 -   6649201 I
e hapBur1.JH425491                252157   0 -   1273513 I
e neoBri1.JH422308               3491820   0 -   5414369 I
e araMac1.AOUJ01470298               637   0 -       895 I
e takFla1.AOOT01113665               306   0 +       323 I
e fr3.HE591725                    289786   0 -    411779 I
e ficAlb2.chr2                 148476508   0 + 157563209 I
e anoCar2.chr1                 148577473   4 + 263920458 I
e pseHum1.KB221220               3809684   0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214   0 -  25666195 I
e allMis1.JH737491                500500   0 -    628740 I
e falPer1.KB390952               2753956   0 -  18327016 I
e falChe1.KB397350               1707310   0 -   3649919 I
e macEug2.GL109592                105897   0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802   0 +   2102797 I
e sarHar1.chr1_GL834688_random    539807   0 +   3395230 I
e melGal1.chr7                  34310641   0 -  38723565 I
e anaPla1.KB742696               1254472   0 -   1270250 I
e amaVit1.AOCU01222764              1324   0 -      1397 I
e apaSpi1.KB929605                579960   0 +   1015623 I
e cheMyd1.KB605988                134509   0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736   1 +    779542 I
e pelSin1.JH207189               1424965   0 +   1874153 I
e melUnd1.JH556573                751858   2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=442557.000000
s hg38.chr8_KI270814v1_alt         92402 79 +    141812 TGTGGGCACTGATGT-GAGTACCAGTTTT-CAGATTTTAAGTAATAATTAACAAACAGCTGAAAGTTCCCAA-GAAAAGGGA-
s ponAbe2.chr8                  59061842 79 + 153482349 TGTGGGCACTGATGT-GAATACCAGTTTT-CAGATTTTAAGTAATAATTAACAAACAGCTGAAAGTTCCCAA-GAAAAGGAA-
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99353718 79 + 108792865 TACGGGCACTGATGCGGAGTGCCAGGCTT-CAGATTTTAAGCTATGATTACCAAACAAATTAAAG-TCCAAA-GAAAGGGTA-
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24020312 75 +  27210278 TACGGGCACTGATGTGGAGTGCCAGGCTT-CACATTTTAAGCTATGATTAC----CAAATGAAAG-TCCAAA-GAAAGGGTA-
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21199531 78 -  23169006 CACAGGCATGGATAAAGTTTGCTCACTTT-TACATTTTAAG---GAATTAATAGATATCACAAAATTCTCAGTGCCAGGGGA-
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19222052 77 -  22931326 AACAGCTATTGACGCAGTTTGTCAAGTTGAGAGATTTTAAGCAATGACTAATACGCAG-TGGCAATTCCCGA-AGGGGA----
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2816054 77 -   6207710 AACAGGTATTGACGCAGTTTGTCAAGTTAAGAGATTTTAAGCAATGACTAATACACAG-TGGAAATTCCCGA-AGGGGA----
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10851987 76 +  17242564 TACAGGTATTGATGTTATTTGTCAAGTTT-TAGATTTTAAGGAATGACTAACAAACAG-TGGAAATTCCCAA-AGGGAA----
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84046306 80 +  91571448 TACAGGTATTGATACAGTTTGCCAAGGTT-TAGATTTTGAGGAATGATTAATAAACAGCTGAAAATTCCCAA-AGAAAGAGG-
i equCab2.chr15                C 0 I 1
s cerSim1.JH767782               6827346 80 -  14545593 CACCGGTATTGATGTGGTTTGCCAAGATT-TAGATTTTAAGGAATGATTAATAAACAGCTGAAAATTCCCAA-AGAAATGGG-
i cerSim1.JH767782             C 0 I 1
s felCat8.chrA3                134118283 80 + 140925898 TGCAAGCACGGATATGGTTTGCCAAGTTT-TAGATTTTAAGGAATGATTGATTAGTAGCTGAAAATTCCCAA-AGAGAGGGG-
i felCat8.chrA3                C 0 I 1
s canFam3.chr17                 57850496 76 -  64289059 GGCAAGCATTGACATGGTTTACTGAGTTT-TAGATTTTAAGGAATGAC----TAATAGGTGAAAATTCCCAA-AGAAAGGGG-
i canFam3.chr17                C 0 I 258
s musFur1.GL896914              13622566 80 -  19722643 TGCAGGTACTGATGCGATTTGCCAAGTTT-TCGATTGCAAGGAATGACTGATTAATAGCTGAAAATTCCCAG-ACAGAAGGG-
i musFur1.GL896914             C 0 I 1
s odoRosDiv1.KB229025            3045096 80 +   4816872 TGCAAGCACTGGTATGGTTTGCCAAGTTT-TCGATTTTAGGGAATGACTGATTAATAGCTGAAAATTCCCAA-AGAAAGGGC-
i odoRosDiv1.KB229025          C 0 I 1
s pteAle1.KB030580              19420570 80 -  23789964 TACAGGCACTGATGCGGTTTGCCAAGCTT-TAGATTTTAAGGGATGATTAATAAACAGTTGAAAATTCCCAC-AGAAAGGGA-
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27633684 81 -  46401353 TACAGGTGTTGATGCTGTTTGCTAAGTTT-TAGATTTTAAGGAATGATTAATAAACAATCTGAAATTCCCAA-GGACAGGAGA
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9980265 81 +  24341844 tacagatACTGATGCTGTTTGCTAAGTTT-TAGATTTTAAGGAATGATTAATAAACCATCCAAAATTCCCAA-GGAAAAGAGA
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1050929 70 -   2788317 T--------TAATGTGTTTTGCCAAGTGT-TAGATTTTAAGGTATGATTAATAAACAATCTAAAATTCCCAA-GGAAAGG---
i dasNov3.JH567436             C 0 C 0
e ornAna1.Contig53964                668  0 -      2070 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221220               3809684  0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH737491                500500  0 -    628740 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e sarHar1.chr1_GL834688_random    539807  0 +   3395230 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=79260.000000
s hg38.chr8_KI270814v1_alt         92481  90 +    141812 TTGTACAC----AAGC--ATGCATTGAACTGATCTTTATAAGTTTGCTGACAATT-CCATCAGTGA-------------------------------------------------CACAG-----GA--CAAAGAGACT-----CAGGGT------CTCCACAG
s ponAbe2.chr8                  59061921  90 + 153482349 TTGTACGC----AAGC--ATGCATTGAACTGATCTTTATAAGTTTGCTGACAATT-CCATCAGTGA-------------------------------------------------CACAG-----GA--CAAAGAGACT-----CAGGGT------CTCCACAG
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99353797 120 + 108792865 TCGCAAAC----AAGC--ACAGGCTGC----ATTTCTATCAATTCATTGACAATT-TCCTCAGTCAGGC---------AGGGGCT------TGACTCCTGGCTGGGCCCATCACCCCCAG-----GA--CAAAGGGGCA-----CAGGGT------CTCCACAG
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24020387 120 +  27210278 TTGCAAAC----AAGC--ACAGGCTGC----ATTTCTATCAATTCATTGACAATT-CCCTCAGACAGGC---------AGGGGCT------TGACTCCTGGCTGGGCCCATCACCCCCAG-----GA--CAAAGGGGCA-----CAGGGT------CTCCACAG
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21199609 134 -  23169006 ATGTACACGATGAAGC--ACACTTTGGATTCATTTATATAAACCCACTGATGACTGTGCTCGGAGAAGC---------AGGGGCC------TGACTCCTAGTTGAGCCCACTGCCCAGAGGTGGTGA--TAGGAGGACA-----CCTGGT------CCCCGTAG
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19222129 110 -  22931326 ATGCACATGAAGAAACT-GGATCGAGAATTTATCTGCAGG-----------------TCCCAGAGAGGCACGGACTTGAGTCTTGG---------------CCGAGCCCATGACCGACA-------A--AACA-GGATG-----CAGAAC------CTCCATGG
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2816131 108 -   6207710 ATGCACATGAAGAAACT-GGATCGAGAACTTATCTCCAGG-----------------TCCCAGAGAGGCATGGACTT--GTCTTGG---------------CCGAGCCCATGACCGACA-------A--AACA-GGATG-----CAGAAC------CTCCACAG
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10852063 123 +  17242564 ATGCACCCAGAGAGGCT-GGACCTGGAATTTATCTCCAGG-----------------TCCCAGGGAGGCAGGGGCCTGAGTCCTGG---------------CTGAGCCAATGACCAATG-------ACCAACA-GGAGGAGACCCAGGACGCCGAGCCCCCCAG
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84046387 135 +  91571448 ACGCACAAGAAAAAGCTAGGACTTTGACTTCACCCATATAAATTTGCTGATGACTCTCCCCGGAGAGGC---------AGGGGCT------TGACTCTTGGGTAAGCATATCACCAACAGAAGGAGA--CACA-GGATG-----CACAGC------CTTCACAG
i equCab2.chr15                I 1 C 0
s cerSim1.JH767782               6827427 135 -  14545593 ATCCATACTAAGAAGCTAGCACCTTGAATTTATCTACATAAATTTGCTGATGACTCTCCCAGGAGAGGC---------AGGGGCT------TGACTCTCGTCTGAGCACATCACCAATAGGAGAAGA--CACA-GGATG-----CACAGC------CTTCTCAG
i cerSim1.JH767782             I 1 C 0
s felCat8.chrA3                134118364 124 + 140925898 ATGCACACAAAGAACCTAGGACCTTGAATTGATCTATATAAATCCACTGATGACACCCCA--CAGGGGC---------AGGGGCG------GGACTCCTGGCCGAGCAATTTGCCAACAGGAGGGGA--CACC-GGGAG-----C---------------ACAG
i felCat8.chrA3                I 1 C 0
s musFur1.GL896914              13622647 112 -  19722643 AGGTACACGGAGGAGCTAGGACCTTGAATTTATCTACACAGACTGGC---------------GGGGGCC---------AGACTCCG-------------GGCTGAGCCCCTCACCAATGGGAGGAGA--CACG-GGAAG-----CAGGGC------TC-GACAG
i musFur1.GL896914             I 1 C 0
s odoRosDiv1.KB229025            3045177 134 +   4816872 ATGTACATGGAGAAGCTAGGACCTGGAATTTATCTACACAAATTCACTGACGACTCCCCACGGAGGGGC---------AGGGCCGGACTCC-------TGGCGGAGCACCCCACCGACAGGAGGAGA--CACG-GGAAG-----CAGAGC------TCTGACAG
i odoRosDiv1.KB229025          I 1 C 0
s pteAle1.KB030580              19420650 132 -  23789964 ACACACTCAAAGAAGCCAGGACCTTGAATTTACCGATATAAATTTGCTGACAACTCTCCCCGGAGAGGC----------GGGGCT------TGGCTCTGGGCTGAGCACATGGCCCGCAGGAGGCGA--CA---GCCCG-----CACAGC------CCTCTAAG
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27633765 117 -  46401353 ATGTACACGAAGAGGCTAGGACCTTGAATTTATCTGTATGAACTTGCTAATGACTCCCCTCAGAGAAAT---------CAGGGCT------TGACTCTTGGCT-------------------GAGGA--GAAAGGTACA-----TGCAGC------CTTCACAG
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9980346 134 +  24341844 AAATACATGAGGAGGCTATGACTTTGAATTTAACTGTATGAATTTGCTAATGACTCCCCTCAGAGAGAT---------GAGGGCT------TGATTCCTGACTGAGCACATCACCAACAG--GAGGG--GAAAGGGACA-----TGCAGC------CTTCACGG
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1050999 122 -   2788317 --------GAAGAAGCTAAAACCTTGAATTTATCTACACACATTTGCTGAGGACT---CTCAGTGAGGC---------AGGAGAT------CGACTCTTCAATGAGTATCTCACCAATA---GGAGA--CAAAGGGACA-----TAGAGC------CTATGCAG
i dasNov3.JH567436             C 0 C 0
e canFam3.chr17                 57850572 258 -  64289059 I
e ornAna1.Contig53964                668   0 -      2070 I
e tetNig2.chr10                  6379385   0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382   0 -   6649201 I
e hapBur1.JH425491                252157   0 -   1273513 I
e neoBri1.JH422308               3491820   0 -   5414369 I
e araMac1.AOUJ01470298               637   0 -       895 I
e takFla1.AOOT01113665               306   0 +       323 I
e fr3.HE591725                    289786   0 -    411779 I
e ficAlb2.chr2                 148476508   0 + 157563209 I
e anoCar2.chr1                 148577473   4 + 263920458 I
e pseHum1.KB221220               3809684   0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214   0 -  25666195 I
e allMis1.JH737491                500500   0 -    628740 I
e falPer1.KB390952               2753956   0 -  18327016 I
e falChe1.KB397350               1707310   0 -   3649919 I
e macEug2.GL109592                105897   0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802   0 +   2102797 I
e sarHar1.chr1_GL834688_random    539807   0 +   3395230 I
e melGal1.chr7                  34310641   0 -  38723565 I
e anaPla1.KB742696               1254472   0 -   1270250 I
e amaVit1.AOCU01222764              1324   0 -      1397 I
e apaSpi1.KB929605                579960   0 +   1015623 I
e cheMyd1.KB605988                134509   0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736   1 +    779542 I
e pelSin1.JH207189               1424965   0 +   1874153 I
e melUnd1.JH556573                751858   2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=237060.000000
s hg38.chr8_KI270814v1_alt         92571 129 +    141812 CTCACAGCCC-CC--TGTCTTCCTTCCCATCAACCTCTTCCAGCTTCC--------------------------------------------------------------AGCTCCTTCCT-TGGGGCCCAGAAACAGAC-----------------------------------------------------------------------------TCAAGCCCCTCT--CACCCTAGAAACTCTTCC-CATATGGCTTTTCTCTTCGGTTATC
s ponAbe2.chr8                  59062011 129 + 153482349 CTCACAGCCC-CC--TGTCTTTCTTCCCTTCAACCTCTTCCAGCTTCC--------------------------------------------------------------AGCTCCTTCCC-TGGGGCCCAGAAACAGAC-----------------------------------------------------------------------------TCAAGCCCCTCT--CACCCTAGAAACTCTTCC-CATATGGCTTTCCTCTTCGGTTATC
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99353917 126 + 108792865 CTCACAGCCCTCC--TGTCTTCCTTCTCATAAACC---TTCAGCTTCC--------------------------------------------------------------AGCTCTTTCTC-GGGGACCCAAAAACAGGC-----------------------------------------------------------------------------TCGCACCCCTA---CGCCCTAAGAACCCTTCC-CACTTGATTTTCCTCTTCCGTTATC
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24020507 125 +  27210278 CTCACAGCCC-CC--TGTCTTCCTTCTCATAAACC---TTGAGCTTCC--------------------------------------------------------------AGCTCTTTCCC-TGGGGCCCAGAAACAGGC-----------------------------------------------------------------------------TCACGCCCCTA---CAGCCTAAGAACCCTTCC-CACTTGATTTTCCTCTTCCGTTATC
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21199743 118 -  23169006 CTCACAATCC-C------------TCTCTTCAGCCTCATCCAGCAACC--------------------------------------------------------------AGCTCTTTCCC-TGGGGTCTCGAAACAGGC-----------------------------------------------------------------------------ACAAGCCTCTCT--CGCCCTAGAAACAC-CCC-CTCCTGGCTTTCTTCTTCTCTCACC
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19222239 205 -  22931326 CTCACAGCCC-TC--TCTCTTCCCAGACATCAC-CTCTTCCAGCCACC--------------------------------------------------------------GGCTTCTTCCCCTGGAGTCTAGAAACAGGC-TTCTTtttgtttgtctgtctcttttgtttgtttgtttgtttcactttggggttttttttttagtttttttgttttgtttAGTCCCTCC--TATCATAAAAACCTTCCC-TTTCTCACTTTCCTCTTCCATTATC
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2816239 206 -   6207710 CTCACAGCCC-CC--TCTCTTCCCAGACATCAC-CTCTTCCAGCCACC--------------------------------------------------------------AGCTTCTTCCCCTGGAGCCTAGAAACAGGCTTtttttttgtttgtctgtctcttttgtttgtttgtttgtttcactttgggggtttttttttagtttttttgttttgtttAGTCCCTCC--TATCATAAAAACCTTCCC-TTTCTCACTTTCCTCTTCCATTATC
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10852186 121 +  17242564 CTCCCAGCCC-CC--TCTCTTTGGGGCCATCAA-CTCTTCCAGCCCCC--------------------------------------------------------------AGCCCCTTCCCCCGGGGCCTAGAAGTAGGC-----------------------------------------------------------------------------GCCAGTGTCTCC--CATCACAGAAACCTTCCC-TTGCGA--------CTTCCACCAGC
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84046522 128 +  91571448 CTCACAGCCC-CT--C-TCTTCTGCACCATCAGCCTCTTCCAGCCACC--------------------------------------------------------------AGCTCCTTCCCCTGAGGCCTAGAAATAGGC-----------------------------------------------------------------------------TCAAGTCTCTCT--CATC-TAAAAACCTTCCT-TTTTTCACTTTCTCCTTCCGTTATG
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6827562 129 -  14545593 CTCACAAACC-CT--C-TCTTCTGTACCATCAACCTCTTCCAGCCACC--------------------------------------------------------------AGTTCCTTCCCCTGGGGCCTAGAAATAGGC-----------------------------------------------------------------------------TCAAGTCTCTCT--TATCATAAAAACCTTCCC-TTTTTCACTTTCTCCTTTCATCATC
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134118488  77 + 140925898 CTCAGAGACG-CC--C----TCTGTACCATCAACCTCTCACAGCCACC--------------------------------------------------------------AGCCCCCCGCC---------------------------------------------------------------------------------------------------------------------------------CCTGTCACTTTCTCCCTCCCTTACC
i felCat8.chrA3                C 0 C 0
s musFur1.GL896914              13622759  77 -  19722643 CTTACAGACC-CC--C---TTCTGTATCACCAC-CTCGTCCAGCCACC--------------------------------------------------------------AGCTCTGGCCC---------------------------------------------------------------------------------------------------------------------------------TTCGTCACTGTCTTCTCTCCTTACC
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3045311  78 +   4816872 CTCACAGACC-CC--C---TTCTGTACCATCAAGCTCCTCCAGCCACC--------------------------------------------------------------AGCTCCAGCCC---------------------------------------------------------------------------------------------------------------------------------TTTGTCACTTTCTCCTTTCCTCATC
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19420782 104 -  23789964 CTCACAG-------------------------------CCCAGCCA-C--------------------------------------------------------------GGCTCCTGCCCCTGGCGCCTGGAAATAGGC-----------------------------------------------------------------------------TCGAGTCTCTCTGGGATCCTAAAAGCCCTCCCTTTTTCCACTTTCTCCTTCTGTTACC
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27633882 189 -  46401353 CTCACCGGTC-CC--C-TCTTCTATACCA-TAACCTCTTCCAGCTGTCAGCTACCTCCAACCAAAGCAAAACTAAACCCACTCCTGTCAGTCGGGTCAATTCTGACCCATAGCTACCTCCCAGGGTACCT-AAAATAGGC-----------------------------------------------------------------------------TCATGTCTCTTT--TATCCTAAAGATCCTCCC-CTTTTAGCTTCCTCCTGTCATTATC
i loxAfr3.scaffold_20          C 0 I 160
s triMan1.JH594629               9980480 127 +  24341844 CTCACTGGCC-CC--C-TCTTTTATACCA-TAACCTATTCCAGCTGTC--------------------------------------------------------------AGCTACTTCCCAGGAGGCCT-AAAATAGGC-----------------------------------------------------------------------------TCATGTCTCTTT--TATCTTAAAGACCCTCCC-CTCTTAGCTTTCTCCTGTCATTATC
i triMan1.JH594629             C 0 I 1
s dasNov3.JH567436               1051121 130 -   2788317 CTCAGCAGCC-CCCTC-TCTTCCATACTATTAACCTCTTCCAACTACC--------------------------------------------------------------AGCTCCTTCCACTAGGGCCTAAAAATAGGC-----------------------------------------------------------------------------TCAAGTATGTCT--TATTTTAAAAACTCTTCC-CT-TTAGCTTTCTGCTTCTGTTATC
i dasNov3.JH567436             C 0 I 1
s xenTro7.KB022068                 38269 109 -     94420 --cacatatc-cc--cctccctgctcccatc-------tacatactcc--------------------------------------------------------------ggctcctcctccctgctcccatctacatac-----------------------------------------------------------------------------tccggctcctcc--tccc-------tGCTCCC-ATCTACATACTCCGGCTCCT-----
i xenTro7.KB022068             N 0 C 0
e canFam3.chr17                 57850572 258 -  64289059 I
e ornAna1.Contig53964                668   0 -      2070 I
e tetNig2.chr10                  6379385   0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382   0 -   6649201 I
e hapBur1.JH425491                252157   0 -   1273513 I
e neoBri1.JH422308               3491820   0 -   5414369 I
e araMac1.AOUJ01470298               637   0 -       895 I
e takFla1.AOOT01113665               306   0 +       323 I
e fr3.HE591725                    289786   0 -    411779 I
e ficAlb2.chr2                 148476508   0 + 157563209 I
e anoCar2.chr1                 148577473   4 + 263920458 I
e pseHum1.KB221220               3809684   0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214   0 -  25666195 I
e allMis1.JH737491                500500   0 -    628740 I
e falPer1.KB390952               2753956   0 -  18327016 I
e falChe1.KB397350               1707310   0 -   3649919 I
e macEug2.GL109592                105897   0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802   0 +   2102797 I
e sarHar1.chr1_GL834688_random    539807   0 +   3395230 I
e melGal1.chr7                  34310641   0 -  38723565 I
e anaPla1.KB742696               1254472   0 -   1270250 I
e amaVit1.AOCU01222764              1324   0 -      1397 I
e apaSpi1.KB929605                579960   0 +   1015623 I
e cheMyd1.KB605988                134509   0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736   1 +    779542 I
e pelSin1.JH207189               1424965   0 +   1874153 I
e melUnd1.JH556573                751858   2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-6911.000000
s hg38.chr8_KI270814v1_alt         92700  6 +    141812 G-----T-TCTT
s ponAbe2.chr8                  59062140 10 + 153482349 AA-TCTT-TCTT
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99354043 10 + 108792865 AA-CCTT-TCTT
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24020632 10 +  27210278 AA-CCTT-TCTT
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21199861 11 -  23169006 AATCCTT-CCTC
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19222444 11 -  22931326 AA-CCTCCCCCA
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2816445 11 -   6207710 AA-CCTCCCCCA
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10852307 11 +  17242564 AG-CCTGCCCCT
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84046650 11 +  91571448 AA-CTTCCCCCC
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6827691 11 -  14545593 AA-CCTCTCCCT
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134118565 10 + 140925898 AA-CCTC-CCCC
i felCat8.chrA3                C 0 C 0
s musFur1.GL896914              13622836 10 -  19722643 AA-CCTC-CCCT
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3045389 10 +   4816872 AA-CCTT-GCCT
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19420886 10 -  23789964 AA-CCTC-TCCT
i pteAle1.KB030580             C 0 C 0
s triMan1.JH594629               9980608  5 +  24341844 AA-CTT------
i triMan1.JH594629             I 1 I 152
s dasNov3.JH567436               1051252  5 -   2788317 AA-TCT------
i dasNov3.JH567436             I 1 I 6
e canFam3.chr17                 57850572 258 -  64289059 I
e xenTro7.KB022068                 38378  0 -     94420 C
e ornAna1.Contig53964                668  0 -      2070 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221220               3809684  0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH737491                500500  0 -    628740 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e sarHar1.chr1_GL834688_random    539807  0 +   3395230 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e loxAfr3.scaffold_20           27634071 160 -  46401353 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-5511.000000
s hg38.chr8_KI270814v1_alt         92706  58 +    141812 AGAATAGTGAACATCTGT----GGTCCCTATGCTTTC---------------------ACCTGCAGCTGC------------------------------------------------------------TCTT--CTGCCTTTA---
s ponAbe2.chr8                  59062150  58 + 153482349 AGAATAGTGAACATCTGT----GGTCCCTATGCTTTC---------------------ACCTGCAGCTGC------------------------------------------------------------TCTT--CTGCCTTTA---
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99354053  61 + 108792865 AGAACAGTGAACACCTGT----GGTCCCTACACCTCC---------------------ACCTGCAGTAGCCAC---------------------------------------------------------TCTT--CTGCCTTTA---
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24020642 118 +  27210278 AGAACAGTGATCACCTGT----GGTCCCTACGCCTCC---------------------ACCTGTAGCAGCCGCTCTTCTGCCTTTAATGTTGGttttttttttttcttttcttttctttttttcttctcttctt--CTGCCTTTA---
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21199872  55 -  23169006 GGAAGAGTGAGCACTCAC----AGT--CTACTCCCGC---------------------A-CTGCAGCCTG------------------------------------------------------------ACTT--CTGCCTTCA---
i otoGar3.GL873541             C 0 I 1
s vicPac2.KB632437              19222455  42 -  22931326 AGAGCAATGAGCACCTGC----CGTCTCTCCTCTGGC---------------------TCCTGCAAA---------------------------------------------------------------------------------
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2816456  42 -   6207710 AGAGCAATGAGCACCTGC----CGTCTCTCCTCTGGC---------------------TCCTGCAGC---------------------------------------------------------------------------------
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10852318  46 +  17242564 GGAGCAGCGAACTCCTGCTGCGCGTCTCTCCTTCTGC---------------------TACTGTACT---------------------------------------------------------------------------------
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84046661  77 +  91571448 AGAACAGTGAACACCTGC----TGTCTCTCCTCCTCCGCGTGATGTCT--CCTCATGCTACTGCAACCTG------------------------------------------------------------TCTT--CTGCCTTTA---
i equCab2.chr15                C 0 I 2
s cerSim1.JH767782               6827702  79 -  14545593 AGAACAGTGAACACCCGC----TGTCTCTCCTCCCTCGCCTGATGTCTCGCCTCATGCTACCGCAACCTG------------------------------------------------------------CCTT--CTGCCTTTA---
i cerSim1.JH767782             C 0 I 2
s felCat8.chrA3                134118575  77 + 140925898 AGCACAGTGAACACCTGC----CG--TCCCCTCCTCCCTCTAACGCTTCTCCTTGTGCTACCAGAACTTG------------------------------------------------------------TCCT--CTGCTTTTA---
i felCat8.chrA3                C 0 C 0
s musFur1.GL896914              13622846  31 -  19722643 GGAACAGCAAATACCTGC----TG--TCTCCTCCTCC---------------------------------------------------------------------------------------------------------------
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3045399  58 +   4816872 GCTGTCTCTTCCACCTAC----AGCTTCTCCTCCTGC---------------------TACTGCAACTTG------------------------------------------------------------TCCC--CTGCTTTTA---
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19420896  38 -  23789964 GGAATAGGGAACACCTGC----TGGCCCTCCTCCTTCACCTG----------------------------------------------------------------------------------------------------------
i pteAle1.KB030580             C 0 C 0
s dasNov3.JH567436               1051263  76 -   2788317 AGAGTAGCAAACACCTGC----AGTCTCTCCTTCACC---TGATGTGTCTCCTCATGCTACTACAACCTG------------------------------------------------------------TCTT--CTGCCTTTA---
i dasNov3.JH567436             I 6 C 0
s xenTro7.KB022068                 38378  50 -     94420 -------------CCTCC----CTGCTCCCATCTACA---------------------TACTCCGGCTCC------------------------------------------------------------TCCTCCCTGCTCCCATCT
i xenTro7.KB022068             C 0 C 0
e canFam3.chr17                 57850572 258 -  64289059 I
e ornAna1.Contig53964                668   0 -      2070 I
e tetNig2.chr10                  6379385   0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382   0 -   6649201 I
e hapBur1.JH425491                252157   0 -   1273513 I
e neoBri1.JH422308               3491820   0 -   5414369 I
e araMac1.AOUJ01470298               637   0 -       895 I
e takFla1.AOOT01113665               306   0 +       323 I
e fr3.HE591725                    289786   0 -    411779 I
e ficAlb2.chr2                 148476508   0 + 157563209 I
e anoCar2.chr1                 148577473   4 + 263920458 I
e pseHum1.KB221220               3809684   0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214   0 -  25666195 I
e allMis1.JH737491                500500   0 -    628740 I
e falPer1.KB390952               2753956   0 -  18327016 I
e falChe1.KB397350               1707310   0 -   3649919 I
e macEug2.GL109592                105897   0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802   0 +   2102797 I
e sarHar1.chr1_GL834688_random    539807   0 +   3395230 I
e melGal1.chr7                  34310641   0 -  38723565 I
e anaPla1.KB742696               1254472   0 -   1270250 I
e amaVit1.AOCU01222764              1324   0 -      1397 I
e apaSpi1.KB929605                579960   0 +   1015623 I
e cheMyd1.KB605988                134509   0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736   1 +    779542 I
e pelSin1.JH207189               1424965   0 +   1874153 I
e melUnd1.JH556573                751858   2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e triMan1.JH594629               9980613 152 +  24341844 I
e loxAfr3.scaffold_20           27634071 160 -  46401353 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-8889.000000
s hg38.chr8_KI270814v1_alt         92764 6 +    141812 AGA---AAG
s ponAbe2.chr8                  59062208 6 + 153482349 AGA---AAG
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99354114 9 + 108792865 AGATTTAAG
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24020760 9 +  27210278 AGATGAAAG
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21199928 6 -  23169006 AGA---AAG
i otoGar3.GL873541             I 1 C 0
s vicPac2.KB632437              19222497 4 -  22931326 --A---GAG
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2816498 4 -   6207710 --A---GAG
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10852364 1 +  17242564 --------G
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84046740 6 +  91571448 GCA---GAG
i equCab2.chr15                I 2 C 0
s cerSim1.JH767782               6827783 6 -  14545593 GCA---GAG
i cerSim1.JH767782             I 2 C 0
s felCat8.chrA3                134118652 5 + 140925898 -CA---CAG
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57850830 6 -  64289059 AGA---GGG
i canFam3.chr17                I 258 C 0
s odoRosDiv1.KB229025            3045457 5 +   4816872 -CC---CAG
i odoRosDiv1.KB229025          C 0 C 0
s dasNov3.JH567436               1051339 3 -   2788317 ------AAG
i dasNov3.JH567436             C 0 I 6
s xenTro7.KB022068                 38428 6 -     94420 ACA---TAC
i xenTro7.KB022068             C 0 C 0
e musFur1.GL896914              13622877 0 -  19722643 C
e ornAna1.Contig53964                668 0 -      2070 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221220               3809684 0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH737491                500500 0 -    628740 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e sarHar1.chr1_GL834688_random    539807 0 +   3395230 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929605                579960 0 +   1015623 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736 1 +    779542 I
e pelSin1.JH207189               1424965 0 +   1874153 I
e melUnd1.JH556573                751858 2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr18                  2064101 602 -  11201131 I
e triMan1.JH594629               9980613 152 +  24341844 I
e loxAfr3.scaffold_20           27634071 160 -  46401353 I
e pteAle1.KB030580              19420934 0 -  23789964 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-56758.000000
s hg38.chr8_KI270814v1_alt         92770 10 +    141812 T----------CTGGGAAAA
s ponAbe2.chr8                  59062214 10 + 153482349 T----------CTGGGAAAA
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99354123  9 + 108792865 T----------CTGGG-AAA
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24020769  9 +  27210278 T----------CTGGG-AAA
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21199934  9 -  23169006 T----------CAGGA-AAG
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19222501  9 -  22931326 T----------CAGGGGAA-
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2816502  9 -   6207710 T----------CAGGGGAA-
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10852365 19 +  17242564 TCCCCTGCCTGCACGGCAA-
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84046746 10 +  91571448 T----------CAGGGAAAC
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6827789 10 -  14545593 T----------CAGGGAAAC
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134118657 10 + 140925898 T----------CAGGGAAAA
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57850836 10 -  64289059 G----------CAGGGGCCA
i canFam3.chr17                C 0 C 0
s odoRosDiv1.KB229025            3045462 10 +   4816872 G----------CAGGAGAAA
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19420934  7 -  23789964 -------------GCGGCCC
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27634231 10 -  46401353 ----------tctgggggaa
i loxAfr3.scaffold_20          I 160 C 0
s triMan1.JH594629               9980765 10 +  24341844 ----------tctgggggaa
i triMan1.JH594629             I 152 C 0
s dasNov3.JH567436               1051348 10 -   2788317 ----------GCAGAAAAGA
i dasNov3.JH567436             I 6 C 0
s taeGut2.chr8_EQ832819_random   1556655 10 -   3401156 ----------TCCAGCCACA
i taeGut2.chr8_EQ832819_random n 602 C 0
s xenTro7.KB022068                 38434 10 -     94420 ---TCCGGCTCCT-------
i xenTro7.KB022068             C 0 N 0
e musFur1.GL896914              13622877  0 -  19722643 C
e ornAna1.Contig53964                668  0 -      2070 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221220               3809684  0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH737491                500500  0 -    628740 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e sarHar1.chr1_GL834688_random    539807  0 +   3395230 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=12172.000000
s hg38.chr8_KI270814v1_alt         92780  9 +    141812 CATC-CCTGC
s ponAbe2.chr8                  59062224  9 + 153482349 CATC-CCTGC
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99354132  7 + 108792865 CGCC-C--AA
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24020778  9 +  27210278 CGCC-CCTGA
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21199943  9 -  23169006 AGGC-CCTGG
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19222510  9 -  22931326 AGTC-ATGGT
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2816511  9 -   6207710 AGTC-ATGGT
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10852384  9 +  17242564 AGTC-ACTGT
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84046756  9 +  91571448 AGTC-ATTGT
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6827799 10 -  14545593 AGTCTCTTGC
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134118667  9 + 140925898 GGTC-ACTGT
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57850846  9 -  64289059 GACT-CCTGG
i canFam3.chr17                C 0 I 3
s musFur1.GL896914              13622877  6 -  19722643 ---C-CCTAT
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3045472  9 +   4816872 GGTC-CCTGT
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19420941  9 -  23789964 TGCT-CCCGC
i pteAle1.KB030580             C 0 I 3
s loxAfr3.scaffold_20           27634241  9 -  46401353 ggtc-tttgt
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9980775  9 +  24341844 ggtc-cttgt
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1051358  9 -   2788317 AGTC-ATCAT
i dasNov3.JH567436             C 0 C 0
s taeGut2.chr8_EQ832819_random   1556665  9 -   3401156 CGTC-TGTGC
i taeGut2.chr8_EQ832819_random C 0 I 9
s xenTro7.KB022240                 30063  9 +     30293 CATT-ACCGC
i xenTro7.KB022240             N 0 C 0
e ornAna1.Contig53964                668  0 -      2070 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221220               3809684  0 +   7268516 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH737491                500500  0 -    628740 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e sarHar1.chr1_GL834688_random    539807  0 +   3395230 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-309993.000000
s hg38.chr8_KI270814v1_alt         92789 32 +    141812 ---------CACC-------TCACAGGC-----ACCCAAGC---------------CAACAG----------------------------GGCTGC
s ponAbe2.chr8                  59062233 32 + 153482349 ---------CACC-------TCACAGGC-----ACCCAAGC---------------CAACGG----------------------------GGCTGC
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99354139 32 + 108792865 ---------GGCT-------GTGCTGGT-----ACCCAGGG---------------TGACAG----------------------------GGCTGC
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24020787 32 +  27210278 ---------GGCC-------CTGCTGGT-----ACCCACAG---------------CGACAG----------------------------TGCTGC
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21199952 23 -  23169006 ---------GGCC-------TCACAGTC-----ACCTAA----------------------------------------------------GCTGG
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19222519 52 -  22931326 ---------GGCC-------TCCTGGTC-----ACCGAAGC---------------CAAGAG--------TCACTCATCAGGGCTTCTCTTCCTGC
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2816520 52 -   6207710 ---------GGCC-------TCCTGGTC-----ACCGAAGC---------------CAAGAG--------TCACTCATCAGGGCTTCTCTTCCTGC
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10852393 51 +  17242564 ---------GGCG-------TCCCCGGC-----ACCGAGGC---------------CAACGG---------CACTCATCAGCCGCCCCCCTCCTGC
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84046765 52 +  91571448 ---------GGCC-------TCCCGATC-----ACCAAAGC---------------CAACAG--------TTACTCATCAGAGCTTCTCTTCCTGC
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6827809 51 -  14545593 ---------AGCC-------TCCTGATC-----ACCGAAGC---------------CGACAG--------TTACTCA-CAGGGCTTCTCTTCCTGA
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134118676 28 + 140925898 ---------GGCC-------TCTTGGTC-----ACTGAGG------------------------------TCACGTA-TC----------------
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57850858 52 -  64289059 ---------AGCA-------CCTCACTA-----ACAGGAGG---------------AGACACCAGAAGCACTGCTGA-CAG-------TTTGCAGA
i canFam3.chr17                I 3 C 0
s musFur1.GL896914              13622883 19 -  19722643 ---------GGCT-------TCTC----------CTCGAG------------------------------CTACT---------------------
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3045481 28 +   4816872 ---------GGCC-------TCCTGATC-----ACTGGGG------------------------------CCGCTCA-CC----------------
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19420953 17 -  23789964 ---------TGCA-------CCCTGTCT-----TCTGC----------------------------------------------------------
i pteAle1.KB030580             I 3 C 0
s loxAfr3.scaffold_20           27634250 66 -  46401353 ---------caccaatctttccctgatc------taggagcttctcagtgcagggaccccag---------gaccaaagggcacactccc------
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9980784 66 +  24341844 ---------catcaatcttcccctggtc------taggagcttcttagcGCAGGGGCTCCAG---------GTCCAAACGGTGCTCCCCC------
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1051367 45 -   2788317 ---------GGCC-------TCCTAATC-----ATAAAAGC---------------CAACAG---------CAACAATCAGGGCATCTCT------
i dasNov3.JH567436             C 0 C 0
s taeGut2.chr8_EQ832819_random   1556683 14 -   3401156 ---------GCCC-------CTCCAGCC-----GC-------------------------------------------------------------
i taeGut2.chr8_EQ832819_random I 9 C 0
s pseHum1.KB221216               4371246 13 -   9690256 ----------CCC-------TGCCCGTT-----GC-------------------------------------------------------------
i pseHum1.KB221216             n 0 C 0
s xenTro7.KB022240                 30072 31 +     30293 CCCCCCAGGGGCC-------CCCCAATCCCATTACCGC----------------------------------------------------------
i xenTro7.KB022240             C 0 C 0
e ornAna1.Contig53964                668  0 -      2070 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH737491                500500  0 -    628740 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e sarHar1.chr1_GL834688_random    539807  0 +   3395230 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-7673.000000
s hg38.chr8_KI270814v1_alt         92821 15 +    141812 TCTTCTGCACCCCTG---------
s ponAbe2.chr8                  59062265 15 + 153482349 TCTTCTGCATCCCTG---------
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99354171 15 + 108792865 TCTTCTGCACCCCTG---------
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24020819 13 +  27210278 TCTTCTGCA--CCTG---------
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21199975  7 -  23169006 GCTCCTG-----------------
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19222571  7 -  22931326 TCCTCTG-----------------
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2816572  7 -   6207710 TCCTCTG-----------------
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10852444  7 +  17242564 TCTTCTG-----------------
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84046817  7 +  91571448 CCCTCTG-----------------
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6827860  7 -  14545593 CTCTCTG-----------------
i cerSim1.JH767782             C 0 C 0
s canFam3.chr17                 57850910  7 -  64289059 CCCCCTT-----------------
i canFam3.chr17                C 0 C 0
s loxAfr3.scaffold_20           27634316  6 -  46401353 -ctcctg-----------------
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9980850  7 +  24341844 TCCCCCG-----------------
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1051412  7 -   2788317 TCCCACA-----------------
i dasNov3.JH567436             C 0 C 0
s taeGut2.chr8_EQ832819_random   1556697  7 -   3401156 ATTTCTG-----------------
i taeGut2.chr8_EQ832819_random C 0 I 5
s pseHum1.KB221216               4371259  7 -   9690256 TTGCCTA-----------------
i pseHum1.KB221216             C 0 I 8
s allMis1.JH735570                588363  7 -    589135 TCCCCTG-----------------
i allMis1.JH735570             n 0 I 5
s xenTro7.KB022240                 30103 15 +     30293 -CCCCCA--------ATCCCATTA
i xenTro7.KB022240             C 0 C 0
e musFur1.GL896914              13622902  0 -  19722643 C
e odoRosDiv1.KB229025            3045509  0 +   4816872 C
e felCat8.chrA3                134118704  0 + 140925898 C
e ornAna1.Contig53964                668  0 -      2070 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e sarHar1.chr1_GL834688_random    539807  0 +   3395230 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e pteAle1.KB030580              19420970  0 -  23789964 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-109943.000000
s hg38.chr8_KI270814v1_alt         92836 13 +    141812 CTGTG---------------------CATGCAGC
s ponAbe2.chr8                  59062280 13 + 153482349 CTGTG---------------------CATGCAGC
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99354186 13 + 108792865 CTGTG---------------------TACATGGG
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24020832 18 +  27210278 CTGGGGATGC----------------TGCATGGC
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19222578 15 -  22931326 CTGCCTG-------------------GGTGCTGC
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2816579 15 -   6207710 CTGCCTG-------------------GGTGCTGC
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10852451 13 +  17242564 CCTTCCG-------------------GGTGCA--
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84046824  9 +  91571448 CTGCC-------------------------CAGG
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6827867 15 -  14545593 CTGCCCG-------------------GGTGCAGG
i cerSim1.JH767782             C 0 C 0
s canFam3.chr17                 57850917  6 -  64289059 CTG---------------------------TAG-
i canFam3.chr17                C 0 C 0
s loxAfr3.scaffold_20           27634322 25 -  46401353 ---------gttcctcattcttggtggcatgagg
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9980857 25 +  24341844 ---------CTTCTTCATTCTTGGTGGCTTGAGG
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1051419  4 -   2788317 ---------CTTC---------------------
i dasNov3.JH567436             C 0 I 3
s taeGut2.chr8_EQ832819_random   1556709  9 -   3401156 -------------------------CCCCGCAGC
i taeGut2.chr8_EQ832819_random I 5 I 25
s pseHum1.KB221216               4371274  9 -   9690256 -------------------------CTGTACAGC
i pseHum1.KB221216             I 8 I 18
s allMis1.JH735570                588375  6 -    589135 -------------------------CTGC---GT
i allMis1.JH735570             I 5 I 9
s xenTro7.KB022240                 30118  5 +     30293 CCCCC-----------------------------
i xenTro7.KB022240             C 0 C 0
e musFur1.GL896914              13622902  0 -  19722643 C
e odoRosDiv1.KB229025            3045509  0 +   4816872 C
e felCat8.chrA3                134118704  0 + 140925898 C
e ornAna1.Contig53964                668  0 -      2070 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e sarHar1.chr1_GL834688_random    539807  0 +   3395230 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e pteAle1.KB030580              19420970  0 -  23789964 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21199982  0 -  23169006 C
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-52140.000000
s hg38.chr8_KI270814v1_alt         92849 26 +    141812 CCCCT-ACCTCCT--TCATTCACATTCTC
s ponAbe2.chr8                  59062293 26 + 153482349 CCCCT-ACCTCCT--TCATTCACATTCCT
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99354199 27 + 108792865 TCTCTGACCACTT--TGGCTCACATGCCC
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24020850 27 +  27210278 TCTCTGACCTCTT--TCACTCACATGTCC
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19222593 27 -  22931326 TGACCCTCCGCCT--TCCTTCACATCCTC
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2816594 27 -   6207710 TGACCCTCCGCCT--TCCTTCACATCCTC
i camFer1.KB017763             C 0 C 0
s equCab2.chr15                 84046833 27 +  91571448 TGGTTCTCCACCT--TCATTCACATCCTC
i equCab2.chr15                C 0 I 3
s cerSim1.JH767782               6827882 27 -  14545593 TGACCCATCACCT--TCATTCACATCCTC
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134118704 13 + 140925898 ----------------AGGGCTGTTCCTC
i felCat8.chrA3                C 0 I 12
s canFam3.chr17                 57850923 13 -  64289059 ----------------CATCAACCTCTTC
i canFam3.chr17                C 0 I 31
s musFur1.GL896914              13622902 11 -  19722643 ------------------GCAACTTGTCC
i musFur1.GL896914             C 0 I 7
s odoRosDiv1.KB229025            3045509 13 +   4816872 ----------------CGGCCATCTCTTC
i odoRosDiv1.KB229025          C 0 I 8
s loxAfr3.scaffold_20           27634347 27 -  46401353 tccctctcctctc--tgctcaatttcctc
i loxAfr3.scaffold_20          C 0 I 45
s triMan1.JH594629               9980882 27 +  24341844 TCCCTCTCCTCTC--TGCTCAATTCTCTC
i triMan1.JH594629             C 0 I 42
s ornAna1.Ultra67               12147475 28 -  12745677 -CCACAACCTTCTAGTCTTTCATATCTGC
i ornAna1.Ultra67              n 0 I 6
s taeGut2.chr8_EQ832819_random   1556743 13 -   3401156 ----------------CCCTCAGCCCCTC
i taeGut2.chr8_EQ832819_random I 25 I 16
s pseHum1.KB221216               4371301 13 -   9690256 ----------------CCTACACCCTGTA
i pseHum1.KB221216             I 18 I 11
s allMis1.JH735570                588390 13 -    589135 ----------------CCCGCACTCCTCC
i allMis1.JH735570             I 9 I 7
s xenTro7.KB022240                 30123 26 +     30293 -CCCAGGGGCCCC--CCAATCCCATTACC
i xenTro7.KB022240             C 0 C 0
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e sarHar1.chr1_GL834688_random    539807  0 +   3395230 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e dasNov3.JH567436               1051423  3 -   2788317 I
e pteAle1.KB030580              19420970  0 -  23789964 C
e orcOrc1.KB316907              10852464  0 +  17242564 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21199982  0 -  23169006 C
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-127058.000000
s hg38.chr8_KI270814v1_alt         92875 39 +    141812 ATCTATTACAGCCCCTCCACCC----CA--------------TATCTACACCCCCCT
s ponAbe2.chr8                  59062319 39 + 153482349 GTCTATTACAGCCCCTCCACCC----CT--------------TATCTGTACCCCCCT
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99354226 39 + 108792865 AACTACTATAGCCCTCCCACCC----CA--------------TATCTCTACCCCCCT
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24020877 39 +  27210278 AGCTACTATAGCCCTCCCACCC----CA--------------TATCTCTACCCCCCT
i saiBol1.JH378126             C 0 C 0
s felCat8.chrA3                134118729  7 + 140925898 --------------------------------------------------TGCCAGG
i felCat8.chrA3                I 12 C 0
s canFam3.chr17                 57850967 26 -  64289059 -------------TCCTTTCCT----TA--------------TCAACCTCCCCTAGA
i canFam3.chr17                I 31 C 0
s musFur1.GL896914              13622920  7 -  19722643 --------------------------------------------------TACCCAG
i musFur1.GL896914             I 7 C 0
s odoRosDiv1.KB229025            3045530 11 +   4816872 ----------------------------------------------CGGCTGCCAGG
i odoRosDiv1.KB229025          I 8 C 0
s pteAle1.KB030580              19420970  4 -  23789964 -----------------------------------------------------CTTG
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27634419 35 -  46401353 atggattgtatcctgcctcatt----aa--------------tgtaactgtct----
i loxAfr3.scaffold_20          I 45 C 0
s triMan1.JH594629               9980951 35 +  24341844 GTATACTGTGTTCTGCCCCATT----AA--------------CATAACTCTCT----
i triMan1.JH594629             I 42 C 0
s ornAna1.Ultra67               12147509 51 -  12745677 CAAGACAATGGGCCCTCCACCC----TAGCTAGCGCAGTGTTCCTCCCTGCTCCT--
i ornAna1.Ultra67              I 6 C 0
s taeGut2.chr8_EQ832819_random   1556772 38 -   3401156 CTTCCCCTCAGCCCCTCCAGC-----CG--------------CATTTCTGTCCCTCC
i taeGut2.chr8_EQ832819_random I 16 I 2
s pseHum1.KB221216               4371325 38 -   9690256 CCCTGTCTGTACCGCTCCTAC-----AC--------------CCTGTCTGTACCGCT
i pseHum1.KB221216             I 11 I 2
s allMis1.JH735570                588410 43 -    589135 GCCTGCCGCCGTCCCTCCATCCCGCACC--------------CTTCGCTGCCCCGCT
i allMis1.JH735570             I 7 I 2
s xenTro7.KB022240                 30149 36 +     30293 -CCCCCCAGGGGCCCCCCAAT-----CC--------------CATTACCGCCCCCT-
i xenTro7.KB022240             C 0 C 0
e vicPac2.KB632437              19222620  0 -  22931326 C
e camFer1.KB017763               2816621  0 -   6207710 C
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e sarHar1.chr1_GL834688_random    539807  0 +   3395230 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e dasNov3.JH567436               1051423  3 -   2788317 I
e equCab2.chr15                 84046860  3 +  91571448 I
e cerSim1.JH767782               6827909  0 -  14545593 C
e orcOrc1.KB316907              10852464  0 +  17242564 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21199982  0 -  23169006 C
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-150916.000000
s hg38.chr8_KI270814v1_alt         92914 20 +    141812 -ACAG-CCCTTCACC----------------------------------------------TCATATC
s ponAbe2.chr8                  59062358 20 + 153482349 -ACAG-CCCTTCACC----------------------------------------------TCATATC
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99354265 21 + 108792865 -ACAGCCCCTCCAGG----------------------------------------------CTGTATC
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24020916 21 +  27210278 -ACAGCCCCTCCAGG----------------------------------------------CTGTATC
i saiBol1.JH378126             C 0 C 0
s orcOrc1.KB316907              10852464 16 +  17242564 ------GCGGACCCT----------------------------------------------CCGCCTT
i orcOrc1.KB316907             C 0 C 0
s felCat8.chrA3                134118736 21 + 140925898 -ATCCCGCGGACCCT----------------------------------------------CTGCCTT
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57850993 21 -  64289059 -GCAGCAAACACCTG----------------------------------------------CTGTTTC
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13622927  4 -  19722643 -GCAG---------------------------------------------------------------
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3045541  4 +   4816872 -ACAG---------------------------------------------------------------
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19420974 21 -  23789964 -ACGGCAGAGCTGGG----------------------------------------------GAAAAGT
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27634454 59 -  46401353 ---------ctaatctgcctcatcaacatcacagagataggatttgcagcaaataggaaaatcacatc
i loxAfr3.scaffold_20          C 0 I 55
s triMan1.JH594629               9980986 13 +  24341844 ---------CTAATC----------------------------------------------CTGCCTC
i triMan1.JH594629             C 0 I 247
s ornAna1.Ultra67               12147560 15 -  12745677 -------CAAGCCTT----------------------------------------------CTCTCTC
i ornAna1.Ultra67              C 0 I 5
s taeGut2.chr8_EQ832819_random   1556812 11 -   3401156 ---------------------------------------------------------TCAGCCGCTCC
i taeGut2.chr8_EQ832819_random I 2 I 5
s pseHum1.KB221216               4371365  8 -   9690256 ---------------------------------------------------------T---ACACCCT
i pseHum1.KB221216             I 2 I 5
s allMis1.JH735570                588455  9 -    589135 ---------------------------------------------------------CT--CCATCCC
i allMis1.JH735570             I 2 I 5
s xenTro7.KB022240                 30185 20 +     30293 AGGGGCCCCCCAATC----------------------------------------------CCATT--
i xenTro7.KB022240             C 0 C 0
e vicPac2.KB632437              19222620  0 -  22931326 C
e camFer1.KB017763               2816621  0 -   6207710 C
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e sarHar1.chr1_GL834688_random    539807  0 +   3395230 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e dasNov3.JH567436               1051423  3 -   2788317 I
e equCab2.chr15                 84046860  3 +  91571448 I
e cerSim1.JH767782               6827909  0 -  14545593 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21199982  0 -  23169006 C
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-13486.000000
s hg38.chr8_KI270814v1_alt         92934 5 +    141812 --TAATC
s ponAbe2.chr8                  59062378 5 + 153482349 --TAATT
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99354286 5 + 108792865 --TGCAC
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24020937 5 +  27210278 --TCCAC
i saiBol1.JH378126             C 0 C 0
s orcOrc1.KB316907              10852480 5 +  17242564 --CACTC
i orcOrc1.KB316907             C 0 I 5
s felCat8.chrA3                134118757 5 + 140925898 --CGTTC
i felCat8.chrA3                C 0 I 10
s canFam3.chr17                 57851014 5 -  64289059 --CGCCT
i canFam3.chr17                C 0 I 7
s pteAle1.KB030580              19420995 5 -  23789964 --CACCG
i pteAle1.KB030580             C 0 I 10
s loxAfr3.scaffold_20           27634568 5 -  46401353 --tgatt
i loxAfr3.scaffold_20          I 55 I 26
s ornAna1.Ultra67               12147580 4 -  12745677 ---TCTC
i ornAna1.Ultra67              I 5 I 1
s taeGut2.chr8_EQ832819_random   1556828 5 -   3401156 --TATCC
i taeGut2.chr8_EQ832819_random I 5 I 9
s pseHum1.KB221216               4371378 5 -   9690256 --TACCG
i pseHum1.KB221216             I 5 I 6
s allMis1.JH735570                588469 5 -    589135 --CATCC
i allMis1.JH735570             I 5 I 6
s xenTro7.KB022240                 30205 5 +     30293 ACCGC--
i xenTro7.KB022240             C 0 C 0
e musFur1.GL896914              13622931 0 -  19722643 C
e vicPac2.KB632437              19222620 0 -  22931326 C
e camFer1.KB017763               2816621 0 -   6207710 C
e odoRosDiv1.KB229025            3045545 0 +   4816872 C
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e sarHar1.chr1_GL834688_random    539807 0 +   3395230 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929605                579960 0 +   1015623 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736 1 +    779542 I
e pelSin1.JH207189               1424965 0 +   1874153 I
e melUnd1.JH556573                751858 2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e dasNov3.JH567436               1051423 3 -   2788317 I
e equCab2.chr15                 84046860 3 +  91571448 I
e triMan1.JH594629               9980999 247 +  24341844 I
e cerSim1.JH767782               6827909 0 -  14545593 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21199982 0 -  23169006 C
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-118509.000000
s hg38.chr8_KI270814v1_alt         92939 27 +    141812 CCCC----TTATAG-------------------CCC---------CTCAACCTCATACC-
s ponAbe2.chr8                  59062383 27 + 153482349 CCCC----TTATAG-------------------CCC---------CTCAACCTCATACC-
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99354291 31 + 108792865 CCCCAGTACTACAC-------------------CCC---------CTCAATTTGGTATC-
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24020942 32 +  27210278 CCCCAGTACTACAG-------------------CTCT-----CAATTTGGT---ATCTA-
i saiBol1.JH378126             C 0 C 0
s equCab2.chr15                 84046863 15 +  91571448 --------------------------------------------ACCCAGCCTGTCCAC-
i equCab2.chr15                I 3 I 1
s felCat8.chrA3                134118772 13 + 140925898 --------------------------------------------CCCCCATCTGTCC---
i felCat8.chrA3                I 10 C 0
s canFam3.chr17                 57851026 15 -  64289059 --------------------------------------------CTGCAACTTGTCCTC-
i canFam3.chr17                I 7 I 8
s pteAle1.KB030580              19421010 15 -  23789964 --------------------------------------------ACCCCCGGAGCCGAC-
i pteAle1.KB030580             I 10 I 1
s loxAfr3.scaffold_20           27634599 55 -  46401353 ccataacaCTGTAGAATAGTGAACACCTGCTGTCTCTA----CTCCTTTACCTGATGCT-
i loxAfr3.scaffold_20          I 26 I 14
s ornAna1.Ultra67               12147585 27 -  12745677 ----------------------ACATCTACAATGCCTC----TCCCTTCATCC-------
i ornAna1.Ultra67              I 1 C 0
s taeGut2.chr8_EQ832819_random   1556842 36 -   3401156 CCCTCCCTCAGTCC-------------------ATCCA----CACCTCTGTCCCTTACC-
i taeGut2.chr8_EQ832819_random I 9 I 14
s pseHum1.KB221216               4371389 31 -   9690256 CCCCCTGTCTGTAC----------------------------CGCTCCTACACCCTGTC-
i pseHum1.KB221216             I 6 I 11
s allMis1.JH735570                588480 31 -    589135 CCCGCACCCCGTCC----------------------------TTCCTCCATCTCCCGCA-
i allMis1.JH735570             I 6 I 11
s xenTro7.KB022240                 30210 28 +     30293 --------------------------------CCCCTAGGGGCCCCCCAATCCCATTACC
i xenTro7.KB022240             C 0 C 0
e musFur1.GL896914              13622931  0 -  19722643 C
e vicPac2.KB632437              19222620  0 -  22931326 C
e camFer1.KB017763               2816621  0 -   6207710 C
e odoRosDiv1.KB229025            3045545  0 +   4816872 C
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e sarHar1.chr1_GL834688_random    539807  0 +   3395230 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e dasNov3.JH567436               1051423  3 -   2788317 I
e triMan1.JH594629               9980999 247 +  24341844 I
e cerSim1.JH767782               6827909  0 -  14545593 C
e orcOrc1.KB316907              10852485  5 +  17242564 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21199982  0 -  23169006 C
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-258430.000000
s hg38.chr8_KI270814v1_alt         92966 50 +    141812 TACACCCAGA-----CTATAGCCTGT--CCA----------CCCCATGTCTACATTCTC------ATTAAAGC
s ponAbe2.chr8                  59062410 50 + 153482349 TACACCTAGA-----CTATAGCCTGT--CCA----------CCCCATGTCTACATTCTC------ATTAAAGC
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99354322 47 + 108792865 TACACCCTG------CTACAGCACTC--CCA----------CTCCCTATCTATACCGCT------ATAGAA--
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24020974 45 +  27210278 CACCCTCCT------ACAGTGCTC----CCA----------CTCCCTATCTATACCGCT------ACAGAA--
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21199982 17 -  23169006 ----------------------------CCC----------CTCATAGCCTATGC------------------
i otoGar3.GL873541             C 0 C 0
s equCab2.chr15                 84046879 15 +  91571448 -----------------------------------------CCTTCTCCCTTAGGT-----------------
i equCab2.chr15                I 1 C 0
s felCat8.chrA3                134118785 26 + 140925898 -----------------------------------------ACACATTACTTAGATTTC------ACAAAAGC
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57851049 44 -  64289059 -----------------------------CACACTCAGGAGAAAGGTTCCTGTGGCCTCCTGATCTCCGAGGC
i canFam3.chr17                I 8 C 0
s musFur1.GL896914              13622931 32 -  19722643 -----------------------------------------ATCGGTCCCTGTGGCCTCCCGATCACTGAGGC
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3045545 19 +   4816872 -------------------------------------------CTGACCCTCCGCCTTC-----------ATC
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19421026 15 -  23789964 -----------------------------------------GTCTGTCCTTGGGGC-----------------
i pteAle1.KB030580             I 1 C 0
s loxAfr3.scaffold_20           27634668 49 -  46401353 TGCAACTTGT-----CTTCTGCCTTT--CCAGAAACAGAAAAAAAGTCAATGTGGC-----------------
i loxAfr3.scaffold_20          I 14 C 0
s ornAna1.Ultra67               12147612 42 -  12745677 TCCTCCTATG-----CTAAATCCTGTCCCCC----------CCACCTCCTTCAAACC----------------
i ornAna1.Ultra67              C 0 I 2
s taeGut2.chr8_EQ832819_random   1556892 38 -   3401156 CACACC----------TCAGTCCCTCCCCTC----------AGCCCCTCCATCCACAC---------------
i taeGut2.chr8_EQ832819_random I 14 C 0
s pseHum1.KB221216               4371431 41 -   9690256 TACACCCTG-------TCTGTACCGCTCCTA----------CACCCTGTCTGTACCGC---------------
i pseHum1.KB221216             I 11 C 0
s allMis1.JH735570                588522 38 -    589135 TCCTCC----------TCCGTCCCTGCCCCA----------CTCCCTCCATCCCGCGC---------------
i allMis1.JH735570             I 11 C 0
s xenTro7.KB022240                 30238 51 +     30293 -GCCCCCTAGGGGCCCCCCAATCCATCCCCATGTACA----ATTTTTTGCGTTAGC-----------------
i xenTro7.KB022240             C 0 C 0
e vicPac2.KB632437              19222620  0 -  22931326 C
e camFer1.KB017763               2816621  0 -   6207710 C
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e sarHar1.chr1_GL834688_random    539807  0 +   3395230 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e dasNov3.JH567436               1051423  3 -   2788317 I
e triMan1.JH594629               9980999 247 +  24341844 I
e cerSim1.JH767782               6827909  0 -  14545593 C
e orcOrc1.KB316907              10852485  5 +  17242564 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=1892.000000
s hg38.chr8_KI270814v1_alt         93016 2 +    141812 CC
s ponAbe2.chr8                  59062460 2 + 153482349 CC
i ponAbe2.chr8                 C 0 C 0
s felCat8.chrA3                134118811 2 + 140925898 TT
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57851093 2 -  64289059 CA
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13622963 2 -  19722643 CT
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3045564 2 +   4816872 CA
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19421041 2 -  23789964 TT
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27634717 2 -  46401353 CT
i loxAfr3.scaffold_20          C 0 I 6
s taeGut2.chr8_EQ832819_random   1556930 2 -   3401156 CT
i taeGut2.chr8_EQ832819_random C 0 C 0
s pseHum1.KB221216               4371472 2 -   9690256 TC
i pseHum1.KB221216             C 0 C 0
s allMis1.JH735570                588560 2 -    589135 CC
i allMis1.JH735570             C 0 C 0
s xenTro7.KB022240                 30289 2 +     30293 CC
i xenTro7.KB022240             C 0 C 0
e vicPac2.KB632437              19222620 0 -  22931326 C
e camFer1.KB017763               2816621 0 -   6207710 C
e ornAna1.Ultra67               12147654 2 -  12745677 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e sarHar1.chr1_GL834688_random    539807 0 +   3395230 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929605                579960 0 +   1015623 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736 1 +    779542 I
e pelSin1.JH207189               1424965 0 +   1874153 I
e calJac3.chr14                 99354369 0 + 108792865 C
e melUnd1.JH556573                751858 2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e dasNov3.JH567436               1051423 3 -   2788317 I
e equCab2.chr15                 84046894 0 +  91571448 C
e triMan1.JH594629               9980999 247 +  24341844 I
e cerSim1.JH767782               6827909 0 -  14545593 C
e orcOrc1.KB316907              10852485 5 +  17242564 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21199999 0 -  23169006 C
e saiBol1.JH378126              24021019 0 +  27210278 C
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=9661.000000
s hg38.chr8_KI270814v1_alt         93018 1 +    141812 C
s ponAbe2.chr8                  59062462 1 + 153482349 C
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99354369 1 + 108792865 C
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24021019 1 +  27210278 C
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21199999 1 -  23169006 C
i otoGar3.GL873541             C 0 C 0
s felCat8.chrA3                134118813 1 + 140925898 T
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57851095 1 -  64289059 C
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13622965 1 -  19722643 C
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3045566 1 +   4816872 C
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19421043 1 -  23789964 C
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27634725 1 -  46401353 C
i loxAfr3.scaffold_20          I 6 C 0
s dasNov3.JH567436               1051426 1 -   2788317 C
i dasNov3.JH567436             I 3 C 0
s ornAna1.Ultra67               12147656 1 -  12745677 C
i ornAna1.Ultra67              I 2 C 0
s taeGut2.chr8_EQ832819_random   1556932 1 -   3401156 C
i taeGut2.chr8_EQ832819_random C 0 C 0
s pseHum1.KB221216               4371474 1 -   9690256 C
i pseHum1.KB221216             C 0 C 0
s allMis1.JH735570                588562 1 -    589135 T
i allMis1.JH735570             C 0 C 0
s xenTro7.KB022240                 30291 1 +     30293 C
i xenTro7.KB022240             C 0 N 0
e vicPac2.KB632437              19222620 0 -  22931326 C
e camFer1.KB017763               2816621 0 -   6207710 C
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e sarHar1.chr1_GL834688_random    539807 0 +   3395230 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929605                579960 0 +   1015623 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736 1 +    779542 I
e pelSin1.JH207189               1424965 0 +   1874153 I
e melUnd1.JH556573                751858 2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e equCab2.chr15                 84046894 0 +  91571448 C
e triMan1.JH594629               9980999 247 +  24341844 I
e cerSim1.JH767782               6827909 0 -  14545593 C
e orcOrc1.KB316907              10852485 5 +  17242564 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-47.000000
s hg38.chr8_KI270814v1_alt         93019 1 +    141812 T
s ponAbe2.chr8                  59062463 1 + 153482349 T
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99354370 1 + 108792865 C
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24021020 1 +  27210278 C
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21200000 1 -  23169006 T
i otoGar3.GL873541             C 0 C 0
s felCat8.chrA3                134118814 1 + 140925898 T
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57851096 1 -  64289059 T
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13622966 1 -  19722643 T
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3045567 1 +   4816872 A
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19421044 1 -  23789964 T
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27634726 1 -  46401353 A
i loxAfr3.scaffold_20          C 0 C 0
s dasNov3.JH567436               1051427 1 -   2788317 T
i dasNov3.JH567436             C 0 C 0
s ornAna1.Ultra67               12147657 1 -  12745677 T
i ornAna1.Ultra67              C 0 C 0
s taeGut2.chr8_EQ832819_random   1556933 1 -   3401156 A
i taeGut2.chr8_EQ832819_random C 0 C 0
s pseHum1.KB221216               4371475 1 -   9690256 T
i pseHum1.KB221216             C 0 C 0
s allMis1.JH735570                588563 1 -    589135 T
i allMis1.JH735570             C 0 C 0
e vicPac2.KB632437              19222620 0 -  22931326 C
e camFer1.KB017763               2816621 0 -   6207710 C
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e sarHar1.chr1_GL834688_random    539807 0 +   3395230 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929605                579960 0 +   1015623 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736 1 +    779542 I
e pelSin1.JH207189               1424965 0 +   1874153 I
e melUnd1.JH556573                751858 2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e equCab2.chr15                 84046894 0 +  91571448 C
e triMan1.JH594629               9980999 247 +  24341844 I
e cerSim1.JH767782               6827909 0 -  14545593 C
e orcOrc1.KB316907              10852485 5 +  17242564 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-95572.000000
s hg38.chr8_KI270814v1_alt         93020 25 +    141812 CCATGCCATATCTAC---ACCCCCA---GTA------
s ponAbe2.chr8                  59062464 25 + 153482349 CCACGCCATATCTAT---ACCCCCA---GTA------
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99354371 25 + 108792865 TTACCCCACATCTAC---ACCTCCA---CTA------
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24021021 25 +  27210278 TCACCCCACATCTAT---ACCTCCA---CTA------
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21200001 15 -  23169006 TCAC-TCACACCCAT---A------------------
i otoGar3.GL873541             C 0 C 0
s canFam3.chr17                 57851097 20 -  64289059 --------CATCAGGGCTCCTCCTC---CTG------
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13622967 17 -  19722643 --------CATCCGG---CCCCCTC---CTG------
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3045568 17 +   4816872 --------TCTCCTA---CTCCCGT---CTG------
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19421045  9 -  23789964 -------------------CCTCTG---CTG------
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27634727  8 -  46401353 --------------------CCACA---GCA------
i loxAfr3.scaffold_20          C 0 I 18
s dasNov3.JH567436               1051428  8 -   2788317 --------------------CTGTG---CCA------
i dasNov3.JH567436             C 0 I 5
s ornAna1.Ultra67               12147658 19 -  12745677 ----TCAAAATCTGC-----CTTTT---CTA------
i ornAna1.Ultra67              C 0 I 11
s taeGut2.chr8_EQ832819_random   1556934 31 -   3401156 --GTCCCTTCCCTCA---GCCCCTCCATCCACACC-T
i taeGut2.chr8_EQ832819_random C 0 C 0
s pseHum1.KB221216               4371476 29 -   9690256 --ACCCCCTGTCTGT---ACCGCTC---CTACACCGT
i pseHum1.KB221216             C 0 C 0
s allMis1.JH735570                588564 31 -    589135 --CCCTGCCCCCCCT---GCCCCCCATCCCGCACT-C
i allMis1.JH735570             C 0 C 0
e vicPac2.KB632437              19222620  0 -  22931326 C
e camFer1.KB017763               2816621  0 -   6207710 C
e felCat8.chrA3                134118815  0 + 140925898 C
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e sarHar1.chr1_GL834688_random    539807  0 +   3395230 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e equCab2.chr15                 84046894  0 +  91571448 C
e triMan1.JH594629               9980999 247 +  24341844 I
e cerSim1.JH767782               6827909  0 -  14545593 C
e orcOrc1.KB316907              10852485  5 +  17242564 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-185072.000000
s hg38.chr8_KI270814v1_alt         93045 25 +    141812 -----------------CAGCCTCTTCA--------------------------------------------ATTGGAATCTACAT
s ponAbe2.chr8                  59062489 25 + 153482349 -----------------CAGCCTCTTCA--------------------------------------------ATTGGAATCTACAT
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99354396 23 + 108792865 -----------------CA-CCTCTCCA---------------------------------------------CCAATATCTACAT
i calJac3.chr14                C 0 I 5772
s saiBol1.JH378126              24021046 53 +  27210278 -----------------CA-CCCCTCCAC--CAATATCTACACC------------CACCACGGGCCCTATTCCTGATACCCACA-
i saiBol1.JH378126             C 0 C 0
s canFam3.chr17                 57851117 20 -  64289059 -----------------CT-CGTTTGCT--------------------------------------------GCTAGG---TCCA-
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13622984 19 -  19722643 -----------------CT-CTGCGGCG--------------------------------------------GCCAGG----ACA-
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3045585  2 +   4816872 -----------------TC-------------------------------------------------------------------
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19421054 14 -  23789964 -----------------CT-GGGGTGCA--------------------------------------------GCTG----------
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27634753 29 -  46401353 ----------------------------CTTCCCTTCCTGCACC--------------TCCCTGCTGCTCG---------------
i loxAfr3.scaffold_20          I 18 C 0
s triMan1.JH594629               9981246 43 +  24341844 ----------------------------TGGCCTGTTCATCACCAAAACAGATAGCCACCAGAGTTTCTCT---------------
i triMan1.JH594629             I 247 C 0
s ornAna1.Ultra67               12147688 24 -  12745677 --------------------------------------------------------------AAATAATCCCACTGAGGTGTTCGT
i ornAna1.Ultra67              I 11 I 1
s taeGut2.chr8_EQ832819_random   1556965 25 -   3401156 CTGTCCCT-TCCCTCAGCC-CCTCCAT-----------------------------------------------------------
i taeGut2.chr8_EQ832819_random C 0 C 0
s pseHum1.KB221216               4371505 17 -   9690256 CTGTACC---------GCT-CCTACAC-----------------------------------------------------------
i pseHum1.KB221216             C 0 C 0
s allMis1.JH735570                588595 26 -    589135 CTCCCTCCATCCCTCACCC-CGTCCTC-----------------------------------------------------------
i allMis1.JH735570             C 0 C 0
e vicPac2.KB632437              19222620  0 -  22931326 C
e camFer1.KB017763               2816621  0 -   6207710 C
e felCat8.chrA3                134118815  0 + 140925898 C
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e sarHar1.chr1_GL834688_random    539807  0 +   3395230 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e dasNov3.JH567436               1051436  5 -   2788317 I
e equCab2.chr15                 84046894  0 +  91571448 C
e cerSim1.JH767782               6827909  0 -  14545593 C
e orcOrc1.KB316907              10852485  5 +  17242564 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21200016  0 -  23169006 C
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-11962.000000
s hg38.chr8_KI270814v1_alt         93070 3 +    141812 GCT--
s ponAbe2.chr8                  59062514 3 + 153482349 CCT--
i ponAbe2.chr8                 C 0 C 0
s saiBol1.JH378126              24021099 3 +  27210278 ACC--
i saiBol1.JH378126             C 0 C 0
s canFam3.chr17                 57851137 3 -  64289059 GCT--
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13623003 3 -  19722643 GCT--
i musFur1.GL896914             C 0 C 0
s loxAfr3.scaffold_20           27634782 3 -  46401353 GCA--
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9981289 3 +  24341844 TCC--
i triMan1.JH594629             C 0 C 0
s ornAna1.Ultra67               12147713 2 -  12745677 TC---
i ornAna1.Ultra67              I 1 C 0
s taeGut2.chr8_EQ832819_random   1556990 3 -   3401156 -CC-A
i taeGut2.chr8_EQ832819_random C 0 C 0
s pseHum1.KB221216               4371522 4 -   9690256 -CCTG
i pseHum1.KB221216             C 0 C 0
s allMis1.JH735570                588621 4 -    589135 -CCTC
i allMis1.JH735570             C 0 C 0
e vicPac2.KB632437              19222620 0 -  22931326 C
e camFer1.KB017763               2816621 0 -   6207710 C
e odoRosDiv1.KB229025            3045587 0 +   4816872 C
e felCat8.chrA3                134118815 0 + 140925898 C
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e sarHar1.chr1_GL834688_random    539807 0 +   3395230 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929605                579960 0 +   1015623 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736 1 +    779542 I
e pelSin1.JH207189               1424965 0 +   1874153 I
e calJac3.chr14                 99354419 5772 + 108792865 I
e melUnd1.JH556573                751858 2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e dasNov3.JH567436               1051436 5 -   2788317 I
e equCab2.chr15                 84046894 0 +  91571448 C
e pteAle1.KB030580              19421068 0 -  23789964 C
e cerSim1.JH767782               6827909 0 -  14545593 C
e orcOrc1.KB316907              10852485 5 +  17242564 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21200016 0 -  23169006 C
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-27653.000000
s hg38.chr8_KI270814v1_alt         93073 8 +    141812 TACTACAG-----
s ponAbe2.chr8                  59062517 8 + 153482349 CACTACAG-----
i ponAbe2.chr8                 C 0 C 0
s saiBol1.JH378126              24021102 8 +  27210278 CCTCAGAG-----
i saiBol1.JH378126             C 0 C 0
s camFer1.KB017763               2816621 8 -   6207710 TGCTCCAG-----
i camFer1.KB017763             C 0 C 0
s canFam3.chr17                 57851140 1 -  64289059 -------G-----
i canFam3.chr17                C 0 I 2
s musFur1.GL896914              13623006 1 -  19722643 -------G-----
i musFur1.GL896914             C 0 I 2
s loxAfr3.scaffold_20           27634785 5 -  46401353 ---TGCAG-----
i loxAfr3.scaffold_20          C 0 I 4
s triMan1.JH594629               9981292 5 +  24341844 ---TGCAC-----
i triMan1.JH594629             C 0 I 4
s dasNov3.JH567436               1051441 3 -   2788317 -----CAG-----
i dasNov3.JH567436             I 5 I 4
s ornAna1.Ultra67               12147715 7 -  12745677 TCCCCCA------
i ornAna1.Ultra67              C 0 C 0
s taeGut2.chr8_EQ832819_random   1556993 8 -   3401156 -----CAGCTCAG
i taeGut2.chr8_EQ832819_random C 0 C 0
s pseHum1.KB221216               4371526 6 -   9690256 -----TACCTC--
i pseHum1.KB221216             C 0 C 0
s allMis1.JH735570                588625 6 -    589135 -----CATCCC--
i allMis1.JH735570             C 0 C 0
e vicPac2.KB632437              19222620 0 -  22931326 C
e odoRosDiv1.KB229025            3045587 0 +   4816872 C
e felCat8.chrA3                134118815 0 + 140925898 C
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e sarHar1.chr1_GL834688_random    539807 0 +   3395230 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929605                579960 0 +   1015623 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736 1 +    779542 I
e pelSin1.JH207189               1424965 0 +   1874153 I
e calJac3.chr14                 99354419 5772 + 108792865 I
e melUnd1.JH556573                751858 2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e equCab2.chr15                 84046894 0 +  91571448 C
e pteAle1.KB030580              19421068 0 -  23789964 C
e cerSim1.JH767782               6827909 0 -  14545593 C
e orcOrc1.KB316907              10852485 5 +  17242564 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21200016 0 -  23169006 C
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-8294.000000
s hg38.chr8_KI270814v1_alt         93081 22 +    141812 CCTCTC---------------------CACCCTGTATGTACAT
s ponAbe2.chr8                  59062525 22 + 153482349 CCTCTC---------------------CACCCTGTATGTACAT
i ponAbe2.chr8                 C 0 C 0
s saiBol1.JH378126              24021110 22 +  27210278 CCTCTC---------------------TACCTCATATCCATAC
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21200016 19 -  23169006 ---CTC---------------------CAGCCTCTATATACAT
i otoGar3.GL873541             C 0 C 0
s camFer1.KB017763               2816629 13 -   6207710 ------------------------------CCTGTCCGCATGT
i camFer1.KB017763             C 0 C 0
s cerSim1.JH767782               6827909 22 -  14545593 CTACTC---------------------CAGCCTGTCTATACAT
i cerSim1.JH767782             C 0 C 0
s canFam3.chr17                 57851143 22 -  64289059 TCCCTT---------------------CTGCCTTCACTCACAT
i canFam3.chr17                I 2 C 0
s musFur1.GL896914              13623009 18 -  19722643 CCTC-------------------------GCCTTCATGCACGT
i musFur1.GL896914             I 2 C 0
s pteAle1.KB030580              19421068 21 -  23789964 -GCCCT---------------------CCGCCCTCCACCACAT
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27634794 21 -  46401353 CCCCTC----------------------CGCCTTCATCCACAT
i loxAfr3.scaffold_20          I 4 I 1
s triMan1.JH594629               9981301 43 +  24341844 CTGCTAGTCAGGATGCAGCTGAGCCCTCCGCCTTCATCTACAT
i triMan1.JH594629             I 4 I 1
s dasNov3.JH567436               1051448 22 -   2788317 CCCTTC---------------------CTTCATTCATTCACAT
i dasNov3.JH567436             I 4 I 1
s ornAna1.Ultra67               12147722 22 -  12745677 TCACTC---------------------CAGCAATTTTGTATCT
i ornAna1.Ultra67              C 0 C 0
s taeGut2.chr8_EQ832819_random   1557001 22 -   3401156 TCCCTT---------------------CCCTCAGCCTGTCCAT
i taeGut2.chr8_EQ832819_random C 0 C 0
s pseHum1.KB221216               4371532 18 -   9690256 -TCCTA---------------------CCCCCTGTCTGTA---
i pseHum1.KB221216             C 0 C 0
s allMis1.JH735570                588631 21 -    589135 -CTGCA---------------------CTCCCCGTCCCTGCCC
i allMis1.JH735570             C 0 C 0
e vicPac2.KB632437              19222620  0 -  22931326 C
e odoRosDiv1.KB229025            3045587  0 +   4816872 C
e felCat8.chrA3                134118815  0 + 140925898 C
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e sarHar1.chr1_GL834688_random    539807  0 +   3395230 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e calJac3.chr14                 99354419 5772 + 108792865 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e equCab2.chr15                 84046894  0 +  91571448 C
e orcOrc1.KB316907              10852485  5 +  17242564 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=3893.000000
s hg38.chr8_KI270814v1_alt         93103 3 +    141812 CCC
s ponAbe2.chr8                  59062547 3 + 153482349 CCC
i ponAbe2.chr8                 C 0 C 0
s saiBol1.JH378126              24021132 3 +  27210278 CCT
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21200035 3 -  23169006 TAT
i otoGar3.GL873541             C 0 C 0
s orcOrc1.KB316907              10852490 3 +  17242564 CCC
i orcOrc1.KB316907             I 5 C 0
s cerSim1.JH767782               6827931 3 -  14545593 TAC
i cerSim1.JH767782             C 0 C 0
s canFam3.chr17                 57851165 3 -  64289059 CTT
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13623027 3 -  19722643 CTC
i musFur1.GL896914             C 0 C 0
s pteAle1.KB030580              19421089 3 -  23789964 CCT
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27634816 3 -  46401353 CTC
i loxAfr3.scaffold_20          I 1 C 0
s triMan1.JH594629               9981345 3 +  24341844 GTC
i triMan1.JH594629             I 1 C 0
s dasNov3.JH567436               1051471 3 -   2788317 CTC
i dasNov3.JH567436             I 1 C 0
s ornAna1.Ultra67               12147744 3 -  12745677 CTC
i ornAna1.Ultra67              C 0 C 0
s taeGut2.chr8_EQ832819_random   1557023 3 -   3401156 CCA
i taeGut2.chr8_EQ832819_random C 0 C 0
s allMis1.JH735570                588652 3 -    589135 CGC
i allMis1.JH735570             C 0 C 0
e vicPac2.KB632437              19222620 0 -  22931326 C
e camFer1.KB017763               2816642 0 -   6207710 C
e odoRosDiv1.KB229025            3045587 0 +   4816872 C
e felCat8.chrA3                134118815 0 + 140925898 C
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221216               4371550 0 -   9690256 C
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e sarHar1.chr1_GL834688_random    539807 0 +   3395230 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929605                579960 0 +   1015623 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736 1 +    779542 I
e pelSin1.JH207189               1424965 0 +   1874153 I
e calJac3.chr14                 99354419 5772 + 108792865 I
e melUnd1.JH556573                751858 2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e equCab2.chr15                 84046894 0 +  91571448 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-37936.000000
s hg38.chr8_KI270814v1_alt         93106 12 +    141812 CACTACAGCCCC
s ponAbe2.chr8                  59062550 12 + 153482349 CACTATAGCCCC
i ponAbe2.chr8                 C 0 C 0
s saiBol1.JH378126              24021135 11 +  27210278 C-CAACAGCCCC
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21200038  8 -  23169006 CCCTCGAA----
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19222620  6 -  22931326 ------TGCTCC
i vicPac2.KB632437             C 0 I 6
s orcOrc1.KB316907              10852493  6 +  17242564 ------TACTCC
i orcOrc1.KB316907             C 0 I 6
s cerSim1.JH767782               6827934  1 -  14545593 -----A------
i cerSim1.JH767782             C 0 C 0
s canFam3.chr17                 57851168  7 -  64289059 -----CTACTCC
i canFam3.chr17                C 0 I 6
s musFur1.GL896914              13623030  7 -  19722643 -----CTAATCC
i musFur1.GL896914             C 0 I 6
s pteAle1.KB030580              19421092  7 -  23789964 -----CGACTCC
i pteAle1.KB030580             C 0 I 6
s loxAfr3.scaffold_20           27634819  6 -  46401353 ------TATTCC
i loxAfr3.scaffold_20          C 0 I 6
s triMan1.JH594629               9981348  6 +  24341844 ------TACGCG
i triMan1.JH594629             C 0 I 6
s dasNov3.JH567436               1051474  6 -   2788317 ------TATTCA
i dasNov3.JH567436             C 0 I 6
s ornAna1.Ultra67               12147747  2 -  12745677 ----------CA
i ornAna1.Ultra67              C 0 C 0
s taeGut2.chr8_EQ832819_random   1557026 12 -   3401156 CACCTCTGTCCC
i taeGut2.chr8_EQ832819_random C 0 C 0
s pseHum1.KB221216               4371550  7 -   9690256 -----CCGCTcc
i pseHum1.KB221216             C 0 C 0
s allMis1.JH735570                588655 12 -    589135 TCCCTCAGTCGC
i allMis1.JH735570             C 0 C 0
e camFer1.KB017763               2816642  0 -   6207710 C
e odoRosDiv1.KB229025            3045587  0 +   4816872 C
e felCat8.chrA3                134118815  0 + 140925898 C
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e sarHar1.chr1_GL834688_random    539807  0 +   3395230 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e calJac3.chr14                 99354419 5772 + 108792865 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e equCab2.chr15                 84046894  0 +  91571448 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=9317.000000
s hg38.chr8_KI270814v1_alt         93118 10 +    141812 TTCACACAGC
s ponAbe2.chr8                  59062562 10 + 153482349 TTCACCCAGC
i ponAbe2.chr8                 C 0 C 0
s saiBol1.JH378126              24021146  9 +  27210278 TTcac-caat
i saiBol1.JH378126             C 0 C 0
s vicPac2.KB632437              19222632 10 -  22931326 TCCACACGTT
i vicPac2.KB632437             I 6 C 0
s camFer1.KB017763               2816642  1 -   6207710 ---------T
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10852505 10 +  17242564 TCCACACAGC
i orcOrc1.KB316907             I 6 C 0
s canFam3.chr17                 57851181 10 -  64289059 TCCACAGGTT
i canFam3.chr17                I 6 C 0
s musFur1.GL896914              13623043 10 -  19722643 TCCACACATT
i musFur1.GL896914             I 6 C 0
s odoRosDiv1.KB229025            3045587  8 +   4816872 --CACACATT
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19421105 10 -  23789964 TCCACACAGT
i pteAle1.KB030580             I 6 C 0
s loxAfr3.scaffold_20           27634831 10 -  46401353 TCTATGGATT
i loxAfr3.scaffold_20          I 6 C 0
s triMan1.JH594629               9981360  9 +  24341844 TCCACAGAT-
i triMan1.JH594629             I 6 C 0
s dasNov3.JH567436               1051486 10 -   2788317 TCTATATATT
i dasNov3.JH567436             I 6 C 0
s ornAna1.Ultra67               12147749  8 -  12745677 --TATAAATT
i ornAna1.Ultra67              C 0 C 0
s taeGut2.chr8_EQ832819_random   1557038 10 -   3401156 TCCCCTCAGC
i taeGut2.chr8_EQ832819_random C 0 C 0
s pseHum1.KB221216               4371557 10 -   9690256 tgcaccctgc
i pseHum1.KB221216             C 0 n 0
s allMis1.JH735570                588667 10 -    589135 CGCACTCCTC
i allMis1.JH735570             C 0 C 0
e felCat8.chrA3                134118815  0 + 140925898 C
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e sarHar1.chr1_GL834688_random    539807  0 +   3395230 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e calJac3.chr14                 99354419 5772 + 108792865 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e equCab2.chr15                 84046894  0 +  91571448 C
e cerSim1.JH767782               6827935  0 -  14545593 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21200046  0 -  23169006 C
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=16422.000000
s hg38.chr8_KI270814v1_alt         93128 4 +    141812 ATCT
s ponAbe2.chr8                  59062572 4 + 153482349 ATCT
i ponAbe2.chr8                 C 0 C 0
s saiBol1.JH378126              24021155 4 +  27210278 atct
i saiBol1.JH378126             C 0 I 420
s vicPac2.KB632437              19222642 4 -  22931326 ATCC
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2816643 4 -   6207710 ATCC
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10852515 4 +  17242564 ATCC
i orcOrc1.KB316907             C 0 C 0
s cerSim1.JH767782               6827935 1 -  14545593 ---T
i cerSim1.JH767782             C 0 C 0
s canFam3.chr17                 57851191 4 -  64289059 ATCT
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13623053 4 -  19722643 CTCG
i musFur1.GL896914             C 0 C 0
s pteAle1.KB030580              19421115 4 -  23789964 ATCT
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27634841 4 -  46401353 ATCT
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9981369 3 +  24341844 -TCT
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1051496 4 -   2788317 ATCT
i dasNov3.JH567436             C 0 C 0
s ornAna1.Ultra67               12147757 4 -  12745677 GTTT
i ornAna1.Ultra67              C 0 I 2
s taeGut2.chr8_EQ832819_random   1557048 2 -   3401156 --CC
i taeGut2.chr8_EQ832819_random C 0 C 0
s allMis1.JH735570                588677 4 -    589135 CTCC
i allMis1.JH735570             C 0 C 0
e odoRosDiv1.KB229025            3045595 0 +   4816872 C
e felCat8.chrA3                134118815 0 + 140925898 C
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221216               4371567 0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e sarHar1.chr1_GL834688_random    539807 0 +   3395230 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929605                579960 0 +   1015623 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736 1 +    779542 I
e pelSin1.JH207189               1424965 0 +   1874153 I
e calJac3.chr14                 99354419 5772 + 108792865 I
e melUnd1.JH556573                751858 2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e equCab2.chr15                 84046894 0 +  91571448 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21200046 0 -  23169006 C
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=3844.000000
s hg38.chr8_KI270814v1_alt         93132 1 +    141812 T
s ponAbe2.chr8                  59062576 1 + 153482349 T
i ponAbe2.chr8                 C 0 C 0
s otoGar3.GL873541              21200046 1 -  23169006 T
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19222646 1 -  22931326 T
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2816647 1 -   6207710 T
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10852519 1 +  17242564 C
i orcOrc1.KB316907             C 0 C 0
s cerSim1.JH767782               6827936 1 -  14545593 T
i cerSim1.JH767782             C 0 C 0
s canFam3.chr17                 57851195 1 -  64289059 C
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13623057 1 -  19722643 C
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3045595 1 +   4816872 C
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19421119 1 -  23789964 C
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27634845 1 -  46401353 C
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9981372 1 +  24341844 C
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1051500 1 -   2788317 C
i dasNov3.JH567436             C 0 C 0
s ornAna1.Ultra67               12147763 1 -  12745677 T
i ornAna1.Ultra67              I 2 C 0
s taeGut2.chr8_EQ832819_random   1557050 1 -   3401156 T
i taeGut2.chr8_EQ832819_random C 0 I 2
s allMis1.JH735570                588681 1 -    589135 T
i allMis1.JH735570             C 0 n 0
e felCat8.chrA3                134118815 0 + 140925898 C
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221216               4371567 0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e sarHar1.chr1_GL834688_random    539807 0 +   3395230 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929605                579960 0 +   1015623 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736 1 +    779542 I
e pelSin1.JH207189               1424965 0 +   1874153 I
e calJac3.chr14                 99354419 5772 + 108792865 I
e melUnd1.JH556573                751858 2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e equCab2.chr15                 84046894 0 +  91571448 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e saiBol1.JH378126              24021159 420 +  27210278 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=24612.000000
s hg38.chr8_KI270814v1_alt         93133 13 +    141812 GTAGGTTTGGCAA
s ponAbe2.chr8                  59062577 13 + 153482349 GTAGGTTTGGCAA
i ponAbe2.chr8                 C 0 C 0
s otoGar3.GL873541              21200047 11 -  23169006 GGTGGTTTTTT--
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19222647 13 -  22931326 TTAGGCTTGGCAA
i vicPac2.KB632437             C 0 I 4
s camFer1.KB017763               2816648 13 -   6207710 TTAGGTTTGGCAA
i camFer1.KB017763             C 0 I 4
s orcOrc1.KB316907              10852520 13 +  17242564 TCGGGTTTGGCAA
i orcOrc1.KB316907             C 0 I 4
s equCab2.chr15                 84046894  7 +  91571448 ------TTCACAA
i equCab2.chr15                C 0 I 3
s cerSim1.JH767782               6827937 13 -  14545593 TTAGGTTTTGCAA
i cerSim1.JH767782             C 0 I 3
s canFam3.chr17                 57851196 13 -  64289059 ACAGATTTCACAA
i canFam3.chr17                C 0 I 6
s musFur1.GL896914              13623058 13 -  19722643 TTAGATTTCACAA
i musFur1.GL896914             C 0 I 1
s odoRosDiv1.KB229025            3045596 13 +   4816872 TTAGATTTCACAA
i odoRosDiv1.KB229025          C 0 I 4
s pteAle1.KB030580              19421120 13 -  23789964 TCAGGTTTGGCAA
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27634846 12 -  46401353 TTTGG-TTGGCAG
i loxAfr3.scaffold_20          C 0 I 3
s triMan1.JH594629               9981373 12 +  24341844 TTAGG-TTGCCAg
i triMan1.JH594629             C 0 I 3
s dasNov3.JH567436               1051501 13 -   2788317 TTAGATTTGGCCA
i dasNov3.JH567436             C 0 I 3
s ornAna1.Ultra67               12147764  7 -  12745677 GTTGACC------
i ornAna1.Ultra67              C 0 C 0
s taeGut2.chr8_EQ832819_random   1557053 13 -   3401156 AGAGCTCTGTCCA
i taeGut2.chr8_EQ832819_random I 2 C 0
e felCat8.chrA3                134118815  0 + 140925898 C
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221216               4371567  0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH735570                588682  0 -    589135 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e sarHar1.chr1_GL834688_random    539807  0 +   3395230 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e calJac3.chr14                 99354419 5772 + 108792865 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e saiBol1.JH378126              24021159 420 +  27210278 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-2437.000000
s hg38.chr8_KI270814v1_alt         93146 1 +    141812 T
s ponAbe2.chr8                  59062590 1 + 153482349 T
i ponAbe2.chr8                 C 0 C 0
s otoGar3.GL873541              21200058 1 -  23169006 T
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19222664 1 -  22931326 T
i vicPac2.KB632437             I 4 C 0
s equCab2.chr15                 84046904 1 +  91571448 A
i equCab2.chr15                I 3 C 0
s cerSim1.JH767782               6827953 1 -  14545593 A
i cerSim1.JH767782             I 3 C 0
s felCat8.chrA3                134118815 1 + 140925898 T
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57851215 1 -  64289059 T
i canFam3.chr17                I 6 C 0
s pteAle1.KB030580              19421133 1 -  23789964 G
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27634861 1 -  46401353 A
i loxAfr3.scaffold_20          I 3 C 0
s triMan1.JH594629               9981388 1 +  24341844 a
i triMan1.JH594629             I 3 C 0
s dasNov3.JH567436               1051517 1 -   2788317 A
i dasNov3.JH567436             I 3 C 0
s taeGut2.chr8_EQ832819_random   1557066 1 -   3401156 T
i taeGut2.chr8_EQ832819_random C 0 n 0
e musFur1.GL896914              13623071 1 -  19722643 I
e camFer1.KB017763               2816661 4 -   6207710 I
e odoRosDiv1.KB229025            3045609 4 +   4816872 I
e ornAna1.Ultra67               12147771 0 -  12745677 C
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221216               4371567 0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH735570                588682 0 -    589135 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e sarHar1.chr1_GL834688_random    539807 0 +   3395230 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929605                579960 0 +   1015623 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736 1 +    779542 I
e pelSin1.JH207189               1424965 0 +   1874153 I
e calJac3.chr14                 99354419 5772 + 108792865 I
e melUnd1.JH556573                751858 2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e orcOrc1.KB316907              10852533 4 +  17242564 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e saiBol1.JH378126              24021159 420 +  27210278 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=235583.000000
s hg38.chr8_KI270814v1_alt         93147 52 +    141812 TAT--------TTTTAAAAGTTTGAGATCTGCTACATTGTGGCAGTTGTCCT-TTCAATAG
s ponAbe2.chr8                  59062591 50 + 153482349 TAT--------TTTTAA--GTTTGAGGTCTGCTACGTTGTGGCAGTTGTCCT-TTTAATAG
i ponAbe2.chr8                 C 0 C 0
s otoGar3.GL873541              21200059 49 -  23169006 TTT--------TTTTaa---tttgaggtcccctacatcatggcagtcttcct-cttagtag
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19222665 52 -  22931326 TTT--------TTTTTaaagtttgaggcctcctacatcgtggcagttgtcat-tttaacag
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2816665 52 -   6207710 TTT--------TTTTTAAAGTTTGAGGCCTCCTACATCGTGGCAGTTGTCGT-TTTAACAG
i camFer1.KB017763             I 4 C 0
s orcOrc1.KB316907              10852537 48 +  17242564 ------------TTTTAAAGTTTGAGGTGCCCTACATCGTGGCGGTTGTTCT-TTTAAGAG
i orcOrc1.KB316907             I 4 C 0
s equCab2.chr15                 84046905 50 +  91571448 TTT--------TT--AAAAGCCTGAGGTCccctacaccatggtggttgtcct-tccaatag
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6827954 52 -  14545593 TTT--------TTTaaaaagcttgaggtcccctacattatggtggttgtctt-ttcaatag
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134118816 53 + 140925898 TTT--------TTTTTTAAGTTCAAGGTCCCCTGTATCATGGTGGTTGTCCCTTTTAATAG
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57851216 52 -  64289059 TTT--------TTTTTTAAGTTCAAAGTTCCCTATAACATGGTGGCTGTCCC-TTAAATAG
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13623072 34 -  19722643 --------------------------GTCCCCTATGTCATGGCCATTGTCCC-TTTAGCAG
i musFur1.GL896914             I 1 C 0
s odoRosDiv1.KB229025            3045613 52 +   4816872 -TT--------CTTTTAAAGTTCGAGGTCTCCTACATCATGGCGGTTGTCCCTTTTAATAG
i odoRosDiv1.KB229025          I 4 C 0
s pteAle1.KB030580              19421134 52 -  23789964 ACG--------TTTTTAAAAGCcgaggtcccctgcatcatgggggttgtcct-gttaatag
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27634862 60 -  46401353 TTTAAAAAAAAAAaaaaaagtctgaggtcccctacatcatgacagttgctca-tttaatac
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9981389 53 +  24341844 ttt-------ttttttaaagtccaaagtcccctacgtcatgacggttgttct-cttaatac
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1051518 49 -   2788317 TGT--------TTTTGAAAGTCTGAGGTTCCTTACATTGTGGCAGT---ACT-TTTAACAA
i dasNov3.JH567436             C 0 C 0
s ornAna1.Ultra67               12147771 47 -  12745677 TTG--------TTCTCAGATGTGTTGCTTCTCTGCGTGTT-----TTTTTCT-TTAAATAG
i ornAna1.Ultra67              C 0 I 7715
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221216               4371567  0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH735570                588682  0 -    589135 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e sarHar1.chr1_GL834688_random    539807  0 +   3395230 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e calJac3.chr14                 99354419 5772 + 108792865 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr8_EQ832819_random   1557067  0 -   3401156 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e saiBol1.JH378126              24021159 420 +  27210278 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=44545.000000
s hg38.chr8_KI270814v1_alt         93199 7 +    141812 CCAGC-AA
s ponAbe2.chr8                  59062641 7 + 153482349 CCAGC-AA
i ponAbe2.chr8                 C 0 C 0
s otoGar3.GL873541              21200108 7 -  23169006 ctagc-aa
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19222717 7 -  22931326 ccagc-ag
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2816717 7 -   6207710 CCAGC-AG
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10852585 7 +  17242564 CCAGC-AA
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84046955 7 +  91571448 ccagc-aa
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6828006 7 -  14545593 ccagc-aa
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134118869 7 + 140925898 CCAGC-AA
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57851268 8 -  64289059 CCAACTAC
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13623106 7 -  19722643 CCACC-AG
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3045665 7 +   4816872 CCAAC-AA
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19421186 7 -  23789964 ccagc-ca
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27634922 7 -  46401353 ccaac-ca
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9981442 7 +  24341844 ccagc-ca
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1051567 7 -   2788317 ACAAC-AA
i dasNov3.JH567436             C 0 C 0
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221216               4371567 0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH735570                588682 0 -    589135 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e sarHar1.chr1_GL834688_random    539807 0 +   3395230 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929605                579960 0 +   1015623 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736 1 +    779542 I
e pelSin1.JH207189               1424965 0 +   1874153 I
e calJac3.chr14                 99354419 5772 + 108792865 I
e melUnd1.JH556573                751858 2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr8_EQ832819_random   1557067 0 -   3401156 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e saiBol1.JH378126              24021159 420 +  27210278 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=188628.000000
s hg38.chr8_KI270814v1_alt         93206  83 +    141812 CTGAAAAA-CACACAATGATA----AAAACAAAAACAAACTCTGCTTTAGTTTTATTA--ATAC-TTTCAAA-------------------CAGAAATCACATGTCCAAC------
s ponAbe2.chr8                  59062648  81 + 153482349 CTGAAAAA-CACACAATGATA----AAAACAAAAACAAACTCTGTTT--GTTTTATTA--ATAC-TTTCAAA-------------------CAGAAATCACATGTCCTAC------
i ponAbe2.chr8                 C 0 C 0
s otoGar3.GL873541              21200115  74 -  23169006 cttagaaa--acaccatg----------acaaaaacaaactcctgtg--agttcatta--atac-tttcaaa-------------------CACAAACAGCATGTCCTAG------
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19222724  89 -  22931326 ttgagagaatatgtgatgacagaaGAAATGAAA------CCCTCATCCGAGTTCATGA--ACGC-T-TCAAATGACTGTC-----------TTCTAACAGCATGTCCTCC------
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2816724  89 -   6207710 TTGAGAGAATACGTGATGACTGAAGAAATGAAA------CCCTCATCCAAGTTCATGA--ACGC-T-TCAAATGACTGTC-----------TTCTAACAGCATGTCCTCC------
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10852592  96 +  17242564 GTGAGAGAATACACGGTGACAGAAGAAAGCAAACACAAGCCCTGGTTTGAATTTGCTA--ATGCTT-TCAAATGGTTATC-----------CTGTAACAGCACGTCCTCC------
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84046962  96 +  91571448 ctgagaaaatatacaatgacaaaagaaaacaaaaagaaaccctgttttgagttcatta--acgc-tttcaaacgattatt-----------ttataacagcatgtcctcc------
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6828013  96 -  14545593 ttgagaaaatacacgatgacaaaagaaagcagaaagaaaccctgttttgagttcatta--atgc-tttcaaatgattatc-----------ttgtaacagcatgtcctcc------
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134118876 104 + 140925898 TTGAGAAACTACAGGATGGTGAGAGAGA----AGACAAACCCTGTTTTGAGTTCATTATTATGA-T-TCAATCAATCATTATATGAGTATGTCATAATAGCGTGTCCTCT------
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57851276  95 -  64289059 TTGAGGAAACGCAGGATGGTGGGAAAGAACAAAGAGAAACCTTGTTTTGAGTTCACTA--ATGC-TCTCAAATGATTATT-----------CTGTAACAGTGCATCCTC-------
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13623113  95 -  19722643 TTGAGAGAAAACAGGATGGTGAGAGAGAACAGAGACAAACCCTGTCTGGAGCTCACTA--ACGC-T-TCAACTGATTCGT-----------CCCTAGTAGTGCATCCTCC------
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3045672  95 +   4816872 TGGAGAAAACACAGGATGGTGAGAGAGAACAGAGACAAACCCTGTTTGGAGCTCATTA--ACAC-T-TCACATGATCAGT-----------CCCTAACAGTGCGTCCTCC------
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19421193  70 -  23789964 ctgagaagatacatgatgacaaaTGAAA---------AACC-------------------AAAC-TTGCAAACAGTTATC-----------TTACAACAGCAGGCCCCCC------
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27634929  85 -  46401353 ctgagaaaatataccatgacaa---acaacaaaaacaaagccagctctgagttcacta-----------atgtcagctcc-----------aggggaaagcacctcctac------
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9981449  93 +  24341844 ctgagaaaatacaccataacaa---acaacaaaaacaaacccagctttgagttcacta--tcac-tttcaaattattacc-----------ttataacagcatctcctac------
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1051574  91 -   2788317 TTGAGAAAATGCATGATGACAA---AACAAAAACAAAAAAATGGTTTTGAGTT--CCA--ATAC-TTTCAAATGAGTATC-----------TTCTAACACCATCTCCTAA------
i dasNov3.JH567436             C 0 C 0
s xenTro7.KB021649             210852749  88 + 215906545 CTGGTACA-CACTCAGTGTTC----ACATCCAGCACACATTTAGCATTACTTAGATTA--ATAC-TCTCTG--------------------CCAGACTCACATTTTCTGTGTGAAC
i xenTro7.KB021649             N 0 C 0
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385   0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382   0 -   6649201 I
e hapBur1.JH425491                252157   0 -   1273513 I
e neoBri1.JH422308               3491820   0 -   5414369 I
e araMac1.AOUJ01470298               637   0 -       895 I
e takFla1.AOOT01113665               306   0 +       323 I
e fr3.HE591725                    289786   0 -    411779 I
e ficAlb2.chr2                 148476508   0 + 157563209 I
e anoCar2.chr1                 148577473   4 + 263920458 I
e pseHum1.KB221216               4371567   0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214   0 -  25666195 I
e allMis1.JH735570                588682   0 -    589135 I
e falPer1.KB390952               2753956   0 -  18327016 I
e falChe1.KB397350               1707310   0 -   3649919 I
e macEug2.GL109592                105897   0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802   0 +   2102797 I
e sarHar1.chr1_GL834688_random    539807   0 +   3395230 I
e melGal1.chr7                  34310641   0 -  38723565 I
e anaPla1.KB742696               1254472   0 -   1270250 I
e amaVit1.AOCU01222764              1324   0 -      1397 I
e apaSpi1.KB929605                579960   0 +   1015623 I
e cheMyd1.KB605988                134509   0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736   1 +    779542 I
e pelSin1.JH207189               1424965   0 +   1874153 I
e calJac3.chr14                 99354419 5772 + 108792865 I
e melUnd1.JH556573                751858   2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr8_EQ832819_random   1557067   0 -   3401156 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e saiBol1.JH378126              24021159 420 +  27210278 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=117968.000000
s hg38.chr8_KI270814v1_alt         93289 64 +    141812 ATAGATTTGAGCAGTTGTCAAGA--------------CATTTGTTTCTAAACCTTGCAAGCATGCTTGTGTG------------CAGT---AG
s ponAbe2.chr8                  59062729 64 + 153482349 ATAGATTTGAGCAGTTGTCAAGA--------------CATTTGTTTCTGAATCTTGCAAGCATGCTTGTGTG------------CAGT---AG
i ponAbe2.chr8                 C 0 C 0
s otoGar3.GL873541              21200189 57 -  23169006 ACA---------AGTTGTGAAGA--------------CCTTTGTTTCTAAACCTCATAGTCCTGC-TGTGTG------------GACTCAAGG
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19222813 70 -  22931326 ACGCACACGACAAGTCATTA-------AAGTGCAAGGAATGTGTTCGTAAACTCCGCAA-CGTGCCTGTGGG------------CAGA---CG
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2816813 70 -   6207710 ACGCACATGAGAAGTCATTA-------AAGTGCAAGGAATGTGTTCATAAACTCCGCAA-CGTGCCTGTGGG------------CAGA---CG
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10852688 75 +  17242564 ACGCACTTGACAAGCTGTTAAAG--GCAAGTGCGAGGAATGTGCTCGCAAACTTTGCCA-GGAGCTTAGATG------------CAGA---CG
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84047058 77 +  91571448 acacatttgacaaatcgttaaaga-atacgtgcaaggcgtgtgtttgtaagctttgcaatcatgcttgagtg------------caga---tg
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6828109 76 -  14545593 acgcctttgacaagtcgttaaag--atacgtgcaaggtgtgagttcataagctttacaatcatgcttgtgtg------------caga---tg
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134118980 74 + 140925898 GTGCACCTGGCAAGTCATTAAAG--CTACGTGCAGGACA--TGTTCATAAACCCTGCAATGATGCTCGTGTG------------CAGA---CA
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57851371 73 -  64289059 ---CATCTGACAAGTCATTACAG--ATATGTGCAAGGCATGTGTTCATAAACCTTGCCATCATGCTCATTTG------------CAGA---TG
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13623208 56 -  19722643 ACGCATCTGGCAAGTCATTAGAG--TCATG--------------------AACTTGCCACCATGTCCACATG------------CAGA---TG
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3045767 76 +   4816872 ATGCATCTGACAAGTCACTACAG--ACATGTGCGAGGCACGTGTTCATAAACCTTGCCATCATGCCCATGTG------------CAGA---TG
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19421263 64 -  23789964 ACGCACTCGATGGGT-GTTCAAG--ATACGTGCAGGACACGTGG---------TGGCCATCCAGCT-GTGTG------------CC-A---GG
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27635014 75 -  46401353 atacatttgagaagccgttaaag--acacgtgcatggcatttgtctataaacattacaatcatgc-tatgtg------------cacg---tg
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9981542 75 +  24341844 acacatttgagaagttgttaaag--acatgtgcaacacattcatttataaacattacaatcatgc-tatgtg------------caca---tg
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1051665 75 -   2788317 ATATATTTGAGAAGTTGTTAAAG--ATACAGGCAAGGCATTTGTTTGTAAACATTACAATCATAC-TGTATG------------CACA---TG
i dasNov3.JH567436             C 0 C 0
s sarHar1.chr3_GL849915_random   3909080 49 +   4730170 -------------------AGAG--ATTTGGGCTGGGAA--------GAAGCTTTGACCCAAGGTTCCTGAG------------CGAA---TT
i sarHar1.chr3_GL849915_random I 1436 C 0
s xenTro7.KB021649             210852837 66 + 215906545 -----------------------ATCTCCTTCCATAGCATTTGG-CAAAGACCTCACTACTTTGCCTTTAAGACATTCCTCAGTCACT---TG
i xenTro7.KB021649             C 0 C 0
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221216               4371567  0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH735570                588682  0 -    589135 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e calJac3.chr14                 99354419 5772 + 108792865 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr8_EQ832819_random   1557067  0 -   3401156 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e saiBol1.JH378126              24021159 420 +  27210278 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-49156.000000
s hg38.chr8_KI270814v1_alt         93353 65 +    141812 ACCCT----------TGCAACAG--------------TGCTAT-CCCCTCCACCCCCAGGGATCCA-----------------GGGAACCAGG-ACCCAAGGCCTGGG
s ponAbe2.chr8                  59062793 67 + 153482349 ACACT----------TGCAACAG--------------TGCTATGCCCCTCCACCCCCAGGGATCAA-----------------GGGAACCAGGGACCCAAGGCCTGGG
i ponAbe2.chr8                 C 0 C 0
s otoGar3.GL873541              21200246 72 -  23169006 GCACT----------CCTAATAGCCT-GCAGGCTCCTTGCC---CACCTCCACCCCCAGGGCTCCA-----------------AGGCTCCAAG-GCCCAAGACT----
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19222883 67 -  22931326 GACCT----------CGTGAGAGCCC---TAGAG---CCCC---CCGCCCCACCTCC----CCCCA-----------------GGGACCCAAGCA-CCACAGCTGTGG
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2816883 67 -   6207710 GACCT----------CGTGAGAGCCC---TAGAG---CCCC---CTGCCCCACCTCC----CCCCA-----------------GGGACCCAAGCA-CCACAGCCGTGG
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10852763 66 +  17242564 GACCC----------TGTGGTGGCCC----ACAG---GCCC---CCAACCCACCCCC----AGCCA------------------GGACCCAAGCACCCAAGGCTGCGG
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84047135 81 +  91571448 gacctgaggacatcttgtgatagccc-acaggac---tccc---cTGCCCCACCTTCA---TCCTA-----------------GGGACTCAAGGACCCAAGGCTGGGC
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6828185 81 -  14545593 gacctgaggacaccttgtgatagccc-acaggac---tccc---TTGCCTCACCTTCA---CACCA-----------------GGGACCCAAGGACCCAAAGCCGGCA
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134119054 53 + 140925898 GACCTGAGG-----------------------AC---TCCC---CGGCCCCATCTCCA---CCCCA-----------------GGGACCCAAGGA-CCAAGGC-----
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57851444 75 -  64289059 GCCCTGGGGACACCTTGTGAAGCCCC-ACAAGAC---TCCC---TGGACCCACCTCCA---CCCCA------------------GGACCCAGGGACCCAAGGT-----
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13623264 73 -  19722643 AGCCTGAGG--ATCTCGGGATG-CCC-ACAGGAC---TCCC---TGGCCCCACCTCCA---GCCCA-----------------GGGACTCAAGGACCCAAGGC-----
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3045843 76 +   4816872 GACCCGAGGACACCTTGTGACGCCCC-ACAAGAC---TCCC---CGGCCCCACCTCCA---CCCCA-----------------GGGACGCAAGGACCCAAGGC-----
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19421327 75 -  23789964 GACCTGAAGACACCTCTTCACA-GCC-ATAGGAC---TCCC---TGCCCCCACC-------CCCCA-----------------GGGACCCA-GGACCCCAGGCAGGGA
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27635089 81 -  46401353 gattcaaggacacc-ttTGACAGCCC-ACAGGGC---TTCT---CTGCCCCACCTCCAT--CCCCA-----------------AGGACTCAAGGTCCAAGGTCTATGG
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9981617 81 +  24341844 gattcaaggacacc-tgtaacagccc-acagggc---ttcc---cTGCCCCACCTCCAC--CCCCA-----------------AAGAACCAAGGTCCAAGGTCTATGG
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1051740 79 -   2788317 TATTTGAGGTCACCTTGTGATGACCC-ATAGGA------CC---CTGATCCACCTCCAC--CCCCA-----------------GAAATCCAAGGTACACGGTCCAGAA
i dasNov3.JH567436             C 0 C 0
s sarHar1.chr3_GL849915_random   3909129 78 +   4730170 CATGT-AGGAGCCCTGGGAGCAGAGC-ATAAGTTTTATCCC---TGGCTGGACTCTGG---GCTCA-----------------CACAACACAGACTGCATAGT-----
i sarHar1.chr3_GL849915_random C 0 C 0
s allMis1.JH734498               1122665 61 +   1323196 ---------------------ACCCCTGCAAAGG---GGCT---CAGCCCTGCCTGGGG--AGCCA-----------------GGGGACTGGGACTCCAAGCCTGGG-
i allMis1.JH734498             n 0 I 317
s xenTro7.KB021649             210852903 61 + 215906545 -----------------------------------------------ATTCACCACAAGGTTCTCACTGCAGACAGAATGTGGGGTGCCCAGAACCTCACAGCGCTGA
i xenTro7.KB021649             C 0 C 0
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221216               4371567  0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e calJac3.chr14                 99354419 5772 + 108792865 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr8_EQ832819_random   1557067  0 -   3401156 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e saiBol1.JH378126              24021159 420 +  27210278 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-26291.000000
s hg38.chr8_KI270814v1_alt         93418 43 +    141812 ATAG------------GGAGTCACTGCT-CCCTGCTTCCATTG-------CTGCACC-CTT---AGG
s ponAbe2.chr8                  59062860 43 + 153482349 GTAG------------GGAGTCACTGCT-CCCTGCTTCCATTG-------CTGCACC-CTC---AGG
i ponAbe2.chr8                 C 0 C 0
s otoGar3.GL873541              21200318 39 -  23169006 ----------------GGAGTCCCTGCT-CCCTGCTTCCCAGG-------CAGCACT-TGC---AGA
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19222950 36 -  22931326 G-----------------AGTCACTG---CCCATCTCCCGGGG-------CTACACC-CTC---CGT
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2816950 36 -   6207710 G-----------------AGTCACTG---CCCATCTCCCGGGG-------CTACACC-CTC---CGT
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10852829 39 +  17242564 G---------------ACAGTCACCGC--CCCACCTTCCGGGG-------CCGCGCC-CTC---GGG
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84047216 39 +  91571448 T---------------GGAGTCACTGC--CTCACCTTCTGGGG-------CCTCACC-CTC---AGG
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6828266 39 -  14545593 G---------------GGAGTCACTGC--CTCGCCCTCCAGGG-------CCACACC-CTT---AGG
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134119107 18 + 140925898 --------------------------------------GGGGG-------CCACACC-CTC---AGG
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57851519 17 -  64289059 ---------------------------------------GGGG-------TCACACC-CCC---AGG
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13623337 17 -  19722643 --------------------------------------GGGGG-------CCGCGTC-CTC---A-G
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3045919 18 +   4816872 --------------------------------------GGGGG-------CTGCACC-CTC---AGG
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19421402 36 -  23789964 G---------------GAAGTCACTGC--CCCGCC---CTGGG-------CCACACC-CTC---AGG
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27635170 45 -  46401353 GCTG------------GGAATCACTACTCCTCTGCCTCCAAGG-------TCTCACATCTC---AGG
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9981698 45 +  24341844 GCTG------------GGAATCACTGCTCCTCTGCCTCTAAGG-------TATCATATCTC---AGG
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1051819 29 -   2788317 GCTG------------GGAATCACTGCTCCCCTGC-----------------------CTC---GGG
i dasNov3.JH567436             C 0 C 0
s sarHar1.chr3_GL849915_random   3909207 37 +   4730170 -----------------------------GCTTGATTTGGGGAAGGGCTTCTGCACC-CTTCCAAGG
i sarHar1.chr3_GL849915_random C 0 C 0
s xenTro7.KB021649             210852964 53 + 215906545 -TTAGGGGGAAGCTTCAAAGTAACTGC--ACTTTCCTCCACAG-------TCACTCC-ATC---TGG
i xenTro7.KB021649             C 0 N 0
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221216               4371567  0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH734498               1122726 317 +   1323196 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e calJac3.chr14                 99354419 5772 + 108792865 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr8_EQ832819_random   1557067  0 -   3401156 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e saiBol1.JH378126              24021159 420 +  27210278 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=143922.000000
s hg38.chr8_KI270814v1_alt         93461 100 +    141812 GCTCTGT-GGGCT-AC---CGG--TGGTCATCATGGCATACGCTGTGTTCTGATAAAGGCATCTG-TGTCTC--CCACC-CAGGCAG-GAGTTACCAGAG---------CTCTCTGCCCCA
s ponAbe2.chr8                  59062903 100 + 153482349 GCTCTGT-GGGCT-AT---CGG--TGGTCATCATGGCATACGCTGCGTTCTGATAAAGGCATCTG-TGTCTC--CCACC-CAGGCAG-GAGTTACCAGAG---------CTCTCTGCCCCA
i ponAbe2.chr8                 C 0 C 0
s otoGar3.GL873541              21200357  92 -  23169006 GCCCCACGGGGCT-GT---CGG--CGGCCTTCAGGGCCATCACTGC---------AAGTACTGCG-CGTCTC--CCACC-CAGACAG-GAGTTATCAGAG---------CTCAGTGTCCCA
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19222986  78 -  22931326 GCT--GT-GGCAT-TTCTACAG--CGGCCCTCACGGTACACACAGCATGCTAATAAAAG-------T-------------------G-GAGTAATCAGTG---------CTCACTG-CCCG
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2816986  78 -   6207710 GCT--GT-GGCAT-TTCTACAG--CGGCCCTCACGGTACCCACAGCATGCTAATAAAAG-------T-------------------G-GAGAAATTAGTG---------CTCACTG-CCTG
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10852868  90 +  17242564 GCTCCGT-GGCGT-TTGTCCTG--GGGCCTTCCCAGCACACACAGCATCCTAATAAAAG-------TGGCCC---------AGACGG-GAGCAACGAGTG---------CTTACTG-CCCT
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84047255 105 +  91571448 GCACTGT-GGCAT-CTGTACAG--TGGCTATCACACCACACATTGCATTATAATAAACACATCTG-TGTGTCTCCAAGC-CAGATGA-AAGTTATTAGCG---------CTTACTGCCCCG
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6828305 104 -  14545593 GCTCTGT-GGCAT--TGTACAG--TGGCCATCATAGCACGCTCTGTATTCTAATAAACGTATCTG-TGTGTCTCCCGGC-CAGACGA-GAGTTATTAGCA---------CTTCCTGCCCTG
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134119125  95 + 140925898 GCTCTGT-GGCAT-TTGCACAG--TGGCCACTGGAGCACACACTGC-TTCTAATAAAAGCATCTG-TGTGTC-CCCGGC-CAGATGG--------CAGCG---------TTTACTG-CCTG
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57851536  95 -  64289059 GCTTTGT-GGCAT-TTGCACAG--TGGCCATCGGAGCACACATTGC-TTCTAACAAAAGCGTCTG-TGTGTC-CCCGGC-CAGATGG--------CAGTG---------CTCATTG-CCTA
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13623354  95 -  19722643 GCTCTGT-GGCGT-TCGCACCG--TGGCCACCGGAGCACACGGTGC-TTCTAATAAAAGCGTTTG-TGTTTC-CCTGGC-CAGAGGG--------CAGTG---------CTCACCG-CCTG
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3045937  96 +   4816872 GCTCTGT-GGCAT-TTGTACCG--TGCCCATCGGAGCACGCACTGT-TTCTAATAAAAGCGTCTGTTGTGCC-CCTGGC-CAGAGGG--------CAGCG---------CTCAGCA-CCTG
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19421438 101 -  23789964 GCTC-AC-GGCAT-TTGCACAG--TGACCATC--AGCACAAAGTTCATTCTCACAGAAGGGGTTG-GGTGCC-CCTGGC-CAGAAGA-GAGCTGGCGGCA---------CTCACTACCCCA
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27635215 110 -  46401353 GCTCTGT-GGCACCCTGTATGA--TGGCCGTCACAGCACACACTGCATTATAACAAAAGTATCTG-TGTAACCCTCTCCTCAGATA-------ATTAGAGCCAATATCCTTTGTTGCCCCA
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9981743 117 +  24341844 GCTCTGT-GGAACCTTGTACTG--TGGCTGTCACAACACACACTGCATTATAATAAAAGTATCTG-CATGTCTCTCTCCTCAGACAGTGAGTTATTAGAGCCAATACCCTTCGTTGCCTCA
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1051848 101 -   2788317 CCTCTGT-GACACCTTGGACAG--CGGCCATCACAGCACACAATGCATTACAATTAAAGACTCTG-------CCTCTCC-CAGACAGTGAGTTATTAGAG---------TTTATTGCCTTA
i dasNov3.JH567436             C 0 I 2145
s sarHar1.chr3_GL849915_random   3909244  97 +   4730170 ATTATGG-GGGAC-AGAGAAGGGACGGGCACTAGGAAA---------TCATCTAGAAGGCATCAC-AGAGCTGTCCTGT--GGGCAG-GAGCCGTCTGGG---------TTCCAGTCCCCA
i sarHar1.chr3_GL849915_random C 0 C 0
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385   0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382   0 -   6649201 I
e hapBur1.JH425491                252157   0 -   1273513 I
e neoBri1.JH422308               3491820   0 -   5414369 I
e araMac1.AOUJ01470298               637   0 -       895 I
e takFla1.AOOT01113665               306   0 +       323 I
e fr3.HE591725                    289786   0 -    411779 I
e ficAlb2.chr2                 148476508   0 + 157563209 I
e anoCar2.chr1                 148577473   4 + 263920458 I
e pseHum1.KB221216               4371567   0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214   0 -  25666195 I
e allMis1.JH734498               1122726 317 +   1323196 I
e falPer1.KB390952               2753956   0 -  18327016 I
e falChe1.KB397350               1707310   0 -   3649919 I
e macEug2.GL109592                105897   0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802   0 +   2102797 I
e melGal1.chr7                  34310641   0 -  38723565 I
e anaPla1.KB742696               1254472   0 -   1270250 I
e amaVit1.AOCU01222764              1324   0 -      1397 I
e apaSpi1.KB929605                579960   0 +   1015623 I
e cheMyd1.KB605988                134509   0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736   1 +    779542 I
e pelSin1.JH207189               1424965   0 +   1874153 I
e calJac3.chr14                 99354419 5772 + 108792865 I
e melUnd1.JH556573                751858   2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr8_EQ832819_random   1557067   0 -   3401156 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e saiBol1.JH378126              24021159 420 +  27210278 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-186515.000000
s hg38.chr8_KI270814v1_alt         93561 74 +    141812 TTACAGT----ACCAGCAT--------GTGAAC-AGCACCCAGCAAGCATGCA----GTCCTTGT------------------GTCTGTGAGCTCTCCCTC---CCATGTCC
s ponAbe2.chr8                  59063003 74 + 153482349 TTACAGT----ACCAGCAT--------GTGAAC-AGCACCCAGCAAGCACGCA----GTCCTTGT------------------GTCTGTGAGCTCTCCCTC---CCATGTCC
i ponAbe2.chr8                 C 0 C 0
s otoGar3.GL873541              21200449 75 -  23169006 CT-CAGTGGGCACCAGAGT--------GTGCAC-AGCCCTCAGCAGGCACCTACTCTGTCCTTGC-------------------TCTGTGAACT-----TC---CCACATCC
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19223064 54 -  22931326 GA-TAGT----GACAGAGC--------CGG----TGCCCCCAGCAGGCTGTTA----GTCACT-TT-----------------CTCAGCTGGG-------------------
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2817064 54 -   6207710 GA-TAGT----GACAGAGC--------CAG----TGCCCCCAGCAGGCTGTCA----GTCACT-TT-----------------CTCAGCTGGG-------------------
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10852958 73 +  17242564 GC-TGCC----CAGAGAGC--------CGGGC--CACCCCCAGCAGGCGATCA----GTCACTCTT-----------------CTCAACTGAGCTCTCCTC---CTGGGCCC
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84047360 74 +  91571448 TA-TAGC----ACCAGAGC--------ACGGCCCAGCTCCCAGCAGGTGATCA----GTCACTCTT------------------TCAGCTGAGTTCTCCTC---CCATGCCC
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6828409 75 -  14545593 TA-TAGC----ACCAGAGC--------ACGACCTAGCTCCCAGCAGGCCATCA----GCCACTCTT-----------------CTCAGTTGAGCTCCCCTC---CCGTGCCC
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134119220 35 + 140925898 GA-GAGC----ACCA---------------------------GTGGGCAGCCA----GTCACCC------------------------------------C---CC--TCTG
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57851631 76 -  64289059 GA-CAGC----GCCAGAGC--------G-GGCCC-TCACCCAGCGGGCCATC-----ATCACTCCTCCC-----------CCACCCAGTTAAGCTCTCCTC---CC--TCTC
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13623449 52 -  19722643 GA-CAGC----GCCAGAGT--------G-GGCCCAGTACCCAGCGCACGATTG----GTCAAC-------------------------------------C---CC--TCTG
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3046033 71 +   4816872 AA-CAGT----GCCAGAGT--------G-GACCCGGTACCCGGCGGGCGATCC----GTCACCCC------------------CTCAGTTCAGCTCTCCTC---CC--TCTG
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19421539 65 -  23789964 GG-TAGC----ACCAGGGC--------GTGGCCC-------AGCAGGTCATCG----GCCACCC-------------------TTCTGGGCGGCCCTCCTC---CC-CACCC
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27635325 62 -  46401353 ---------------------------GTAGCACAGCAACCAGCAGGGGTTCA----GTGACTTTC-----------------CTCATTGAGCTCTTCCTCT--CTGTGCCC
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9981860 63 +  24341844 ---------------------------ATAGCACAGCACCCAGCAGGCATTCA----GTGACTTTT-----------------C-AATTGAGGTCTTCCTCTCCCCGCGCCC
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1054094 73 -   2788317 ------------TTATAGTCCCCAAGGGCAGCACAGCAATGATCA----TTCA----GTTACTTTT-----------------CTTGTTGAGCACTCCTTCC--CCATGCTC
i dasNov3.JH567436             I 2145 C 0
s sarHar1.chr3_GL849915_random   3909341 74 +   4730170 -------------------------------TTCTGATACCAGCTGGCTACCA----GAGCATGGTAATGACAGTGGATGTAGTatcttcatctctccctc---tttcatcc
i sarHar1.chr3_GL849915_random C 0 N 0
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221216               4371567  0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH734498               1122726 317 +   1323196 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e calJac3.chr14                 99354419 5772 + 108792865 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr8_EQ832819_random   1557067  0 -   3401156 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e saiBol1.JH378126              24021159 420 +  27210278 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=247364.000000
s hg38.chr8_KI270814v1_alt         93635 110 +    141812 AAGGCCT----TACTA----CTCGATTTTTGCCCACTGTGGGGTTTCCCACTTTCTCTAACCTCTAGAA-GTTGCTGGACTGTGTGGCTTACAATGACATAGCATTGCCCCAACCCCA---------------------A
s ponAbe2.chr8                  59063077 111 + 153482349 AAGGCCT----TACTA----CTCGATTTTTGCCCACTATGGGGTTTCCCACTTTCTCTGACCTCTAGAAAGTTGCTGGACTGTGAGGCTTACAACGACATAGCATTGCCCCAACCCCA---------------------A
i ponAbe2.chr8                 C 0 C 0
s otoGar3.GL873541              21200524 107 -  23169006 AAGGCCT----TGCTA----CCCTGGCTCT-CCCACTAGGGTTTTCCCCATTTTCTCTGACCACTGAAA-GTTGATGTACCATGGTGGTTATAAGGAGGTAGCACAGCTC--ACCCCT---------------------A
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19223118  96 -  22931326 ----------------------CTGCCTGCTCCTCCC-TGGCTTTTCCCACCTTCTCTGA-CTCACGGA-GTCAGTGTGCTATTGGGGCTACAATGAGGTGGCACCGCCT--TTCCAA------AAAG-----------A
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2817118  96 -   6207710 ----------------------CTGCCCACTCATCCC-TGGCTTTTCCCACCTTCTCTGA-CTCAAGGA-GTCAGTGAGCTATTGGGGCTACAATGAGGTGGCACTGCCT--TTCCAA------AAAA-----------A
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10853031 109 +  17242564 AAGGCCT----TGTTGCCA-CCCTGTCCTCTCCCCCA-TGGCTTTTCCCACTTTCTCTGACCTCAGGGA-GCCAGTGTACCACAGCGGTTACAATGAGGTGACACTGCCT--TTCCC----------------------A
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84047434 112 +  91571448 AAGGCGT----CGCTCCCA-CCCTGTCCTCTCCCCCAATGGCTTTTGCCACTTTCTCTGACCTCTAGAA-GTCAGTGTACTGTGGGCATTACAATGAGGTAACACTGCTTC-TCCCAA---------------------G
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6828484 112 -  14545593 AAGGCCT----TGTTCCCACCCCTGTCCTCTCCCCTGACGGCTTTTCCCTCTTTCTCTGACCTCTAGAA-GTCAGTGTACTGCAGGGGTTACAACGAGGTAGCACTGCCT--TTCCAA---------------------A
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134119255  82 + 140925898 ------------TTTCCCACCCC---------------CAACT-TTCCCACTTTCTCTGACTTCCACAA-GTCAGTGTGCCACGGGGATTACAACGAGGCAGCCCTGACa-----------------------------a
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57851707  76 -  64289059 GAGGCCT----TGTTCCCACCCT---------------GAGCTTCTCCCACTTTCTCTCACTTCTACAG-GTCAGT---------------------GGTAGCACTGCCA--TTCCAA---------------------A
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13623501 103 -  19722643 GAGGCCT----TGTTCCCAGCCC---------------CAGCTTTTCCCACGTTCTCTCGCGTCTACAG-GTCCGTGTACCAGGAGGATTACACGAAGGGAGCAATGTC---TTCCAAAA---GAAAA-----------A
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3046104 113 +   4816872 GAAGCCT----AGTTCCCA-CCC---------------CAGCTCTTCCCATGTTCTCTCACTTCTACAG-GTCCGTGTATC-GGGGGAAGACAATGAGGTAGTCCTGCCA--TTCCaaaa---gaaaaaaaagaaaagga
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19421604 119 -  23789964 AGGGCCT----G--TCCCA-CCCTGTCCTCTCCCCCTATGGCTTTTCCCACTCTTCCTAACCTCCGGAA-ATCAGTGTGCCACGTGGGTTACAATGAGGGGGCACTGCCT--CCCTCACCTTTAAAAA-----------A
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27635387 120 -  46401353 AAGGGCTCATTTGTTCCTA-CCTCATTCTCTGCCACTATGGCTTTGCTCACCTTCCCTGGTCCCCAGAA-GTCACTGTACCATGGGGGTTACAAGGAGGTAGCAATGCTT--TTCCAA-----TAAAA-----------A
i loxAfr3.scaffold_20          C 0 I 76
s triMan1.JH594629               9981923 120 +  24341844 AAGGCCTCATTTGTCCCTA-CCTCGTTCTCTCTCACTACGGCTTCGCTCACCTTCCCTGGTCCCTAGGA-GTCAACGTACCATGGGGTTTACAAGGAGGTAGCAATGCTT--TTCCaa-----ttaaa-----------a
i triMan1.JH594629             C 0 I 170
s dasNov3.JH567436               1054167 120 -   2788317 AAGGCCTTGCCTGTTCCTA-CCCTGTCCTCTTCCACTATGGATTTTCCCACTTTCTCTGATCTCTAGAA-GCAAAAATACCATGACATTTACAATGAGATATTACTGCTT--TTCaat-----taaaa-----------g
i dasNov3.JH567436             C 0 I 4
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385   0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382   0 -   6649201 I
e hapBur1.JH425491                252157   0 -   1273513 I
e neoBri1.JH422308               3491820   0 -   5414369 I
e araMac1.AOUJ01470298               637   0 -       895 I
e takFla1.AOOT01113665               306   0 +       323 I
e fr3.HE591725                    289786   0 -    411779 I
e ficAlb2.chr2                 148476508   0 + 157563209 I
e anoCar2.chr1                 148577473   4 + 263920458 I
e pseHum1.KB221216               4371567   0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214   0 -  25666195 I
e allMis1.JH734498               1122726 317 +   1323196 I
e falPer1.KB390952               2753956   0 -  18327016 I
e falChe1.KB397350               1707310   0 -   3649919 I
e macEug2.GL109592                105897   0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802   0 +   2102797 I
e melGal1.chr7                  34310641   0 -  38723565 I
e anaPla1.KB742696               1254472   0 -   1270250 I
e amaVit1.AOCU01222764              1324   0 -      1397 I
e apaSpi1.KB929605                579960   0 +   1015623 I
e cheMyd1.KB605988                134509   0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736   1 +    779542 I
e pelSin1.JH207189               1424965   0 +   1874153 I
e calJac3.chr14                 99354419 5772 + 108792865 I
e melUnd1.JH556573                751858   2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr8_EQ832819_random   1557067   0 -   3401156 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e saiBol1.JH378126              24021159 420 +  27210278 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=55079.000000
s hg38.chr8_KI270814v1_alt         93745 7 +    141812 AAAGAAA
s ponAbe2.chr8                  59063188 7 + 153482349 AAAGAGA
i ponAbe2.chr8                 C 0 C 0
s otoGar3.GL873541              21200631 7 -  23169006 AAAGAAA
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19223214 7 -  22931326 AAAAAAA
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2817214 7 -   6207710 AAAAAAA
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10853140 7 +  17242564 AAAAAAA
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84047546 7 +  91571448 AAAAGAA
i equCab2.chr15                C 0 I 1
s cerSim1.JH767782               6828596 7 -  14545593 AAAAGAA
i cerSim1.JH767782             C 0 I 1
s felCat8.chrA3                134119337 7 + 140925898 gaaagaa
i felCat8.chrA3                C 0 I 173
s canFam3.chr17                 57851783 7 -  64289059 AAAGAAA
i canFam3.chr17                C 0 I 5
s musFur1.GL896914              13623604 7 -  19722643 GAAGGGA
i musFur1.GL896914             C 0 I 5
s odoRosDiv1.KB229025            3046217 7 +   4816872 aaaggaa
i odoRosDiv1.KB229025          C 0 I 5
s pteAle1.KB030580              19421723 7 -  23789964 AAAAGAA
i pteAle1.KB030580             C 0 I 1
s loxAfr3.scaffold_20           27635583 7 -  46401353 AAAGAAA
i loxAfr3.scaffold_20          I 76 C 0
s triMan1.JH594629               9982213 7 +  24341844 AAAGAAA
i triMan1.JH594629             I 170 C 0
s dasNov3.JH567436               1054291 7 -   2788317 aaagaaa
i dasNov3.JH567436             I 4 C 0
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221216               4371567 0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH734498               1122726 317 +   1323196 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929605                579960 0 +   1015623 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736 1 +    779542 I
e pelSin1.JH207189               1424965 0 +   1874153 I
e calJac3.chr14                 99354419 5772 + 108792865 I
e melUnd1.JH556573                751858 2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr8_EQ832819_random   1557067 0 -   3401156 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e saiBol1.JH378126              24021159 420 +  27210278 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=126157.000000
s hg38.chr8_KI270814v1_alt         93752 23 +    141812 TAGTATCAAAGTCC--ATTGTAAAC
s ponAbe2.chr8                  59063195 23 + 153482349 TAGTATCAAAGTGC--ATTGTAAAC
i ponAbe2.chr8                 C 0 C 0
s otoGar3.GL873541              21200638 23 -  23169006 CAGTGCCAATATAC--AATTTAAAC
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19223221 23 -  22931326 AAGTATCAAAGTAC--AATTTACAC
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2817221 23 -   6207710 AAGTATCAAAGTAC--AATTTACAC
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10853147 23 +  17242564 TAGTATCAAGGTAC--AATTTACAC
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84047554 23 +  91571448 CAGCATCAAAGTAC--AATTTACAC
i equCab2.chr15                I 1 C 0
s cerSim1.JH767782               6828604 23 -  14545593 TAGTATCAAAGTAC--AATTTACAC
i cerSim1.JH767782             I 1 C 0
s felCat8.chrA3                134119517 22 + 140925898 TATTATTGAAGTAC---TTTTACAT
i felCat8.chrA3                I 173 C 0
s canFam3.chr17                 57851795 22 -  64289059 CAGAATCAAAGTAC---ATTTACAC
i canFam3.chr17                I 5 C 0
s musFur1.GL896914              13623616 22 -  19722643 CAGTATCAAAATAC---ACTTAGAC
i musFur1.GL896914             I 5 C 0
s odoRosDiv1.KB229025            3046229 22 +   4816872 CAGTATCAAAGTAC---ATTCACAA
i odoRosDiv1.KB229025          I 5 C 0
s pteAle1.KB030580              19421731 25 -  23789964 TAGTATCAAAACACACATTTCACAC
i pteAle1.KB030580             I 1 C 0
s loxAfr3.scaffold_20           27635590 23 -  46401353 AAGTCTTAAAGTAC--AATTTAAAC
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9982220 23 +  24341844 AAGTCTTAAAGTAC--AATTTAAAC
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1054298 23 -   2788317 taatattaaagtac--aatttaaat
i dasNov3.JH567436             C 0 C 0
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221216               4371567  0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH734498               1122726 317 +   1323196 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e calJac3.chr14                 99354419 5772 + 108792865 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr8_EQ832819_random   1557067  0 -   3401156 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e saiBol1.JH378126              24021159 420 +  27210278 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=28484.000000
s hg38.chr8_KI270814v1_alt         93775 20 +    141812 CTATTAATTACACAGCTGTG
s ponAbe2.chr8                  59063218 20 + 153482349 CTATTAATTACACAGCTGTG
i ponAbe2.chr8                 C 0 C 0
s saiBol1.JH378126              24021579 20 +  27210278 CCAATATCTATACTCCCATG
i saiBol1.JH378126             I 420 C 0
s otoGar3.GL873541              21200661 20 -  23169006 ACAGTAATTACATGGCTGTG
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19223244 15 -  22931326 ACAGTAG-----CGGCCGTG
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2817244 15 -   6207710 ACAGTAG-----TGGCCGTG
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10853170 15 +  17242564 ACAGTCG-----TGGCTGTG
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84047577 16 +  91571448 ATATTAG----ATGGCTAAG
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6828627 16 -  14545593 CTATTAG----GTGGCTGCA
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134119539 16 + 140925898 ATATTAG----GTGTCTGTG
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57851817 16 -  64289059 ATATCAG----GTGTCTGTG
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13623638 16 -  19722643 GTATTAG----GTGTCTGTG
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3046251 16 +   4816872 ATATTAG----GTGTCTGTG
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19421756 16 -  23789964 ACACCAT----ATGGCTGTG
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27635613 16 -  46401353 ATCTCGA----ATGGCTGTG
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9982243 16 +  24341844 ATATCAA----ATGGCTGTG
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1054321 12 -   2788317 atatt-a----attGCT---
i dasNov3.JH567436             C 0 C 0
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221216               4371567  0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH734498               1122726 317 +   1323196 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e calJac3.chr14                 99354419 5772 + 108792865 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr8_EQ832819_random   1557067  0 -   3401156 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=159545.000000
s hg38.chr8_KI270814v1_alt         93795 40 +    141812 CTACAACCAAAA-CAT-GGATCT-CTGACATCAGCC-TTATAGT
s ponAbe2.chr8                  59063238 40 + 153482349 CTACAACCAAAA-CAT-GGATCT-CTGACATTAGCC-TTATAGT
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99360191 35 + 108792865 CTACAGCCTGA---GT-AGATAT-CTGACATAAGCC-TTA---T
i calJac3.chr14                I 5772 C 0
s saiBol1.JH378126              24021599 35 +  27210278 CTACAGCCCGA---GT-AGATAT-CTGATATCAGCC-TTA---C
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21200681 40 -  23169006 CTACAACCAAAA-CAC-AGATCT-CTGACATCAATC-TTACTGT
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19223259 40 -  22931326 CCACAACCAGAA-CCC-AGGGCT-CTGACGTCAGCC-TTACTGC
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2817259 40 -   6207710 CCACAACCAGAA-CCC-AGGGCT-CTGACGTCAGCC-TTACTGC
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10853185 28 +  17242564 CTACAACCA-AA-CAC-AG------------TAGCC-TTACTGC
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84047593 41 +  91571448 CTACCACCAAAATCAC-AGGGCT-CTGACATTAGCC-TTATTGT
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6828643 40 -  14545593 CTACCACCAAAA-CAT-AGGGCT-CTGAAATTAGCC-TTATTGC
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134119555 40 + 140925898 CTACAGCCAAGA-TAT-GGGGCC-CTCAGATTAGCT-TTACTGC
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57851833 36 -  64289059 CTACAAACAAGA-CAG--AGACT-CTGACATT---T-TTACTGC
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13623654 41 -  19722643 CTACAACCAAGA-CACAGAGGCT-CTCACATTAGCT-TTACTGT
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3046267 39 +   4816872 CTATAACCAAGA-CAC--AGGCT-CTCACATTAGCT-TTACTGC
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19421772 39 -  23789964 CTGCCA-CGGAA-CAC-GGGGCT-CTGACACTGGCC-TCATCGC
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27635629 39 -  46401353 GAACAACCAAAA-CAT-AGGTCTTCTGAC---AGCCTTTACTGC
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9982259 38 +  24341844 GAACAACCAAAA-CAT-AGGTCTTCTGAC---AGCC-TTGTTGC
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1054333 39 -   2788317 --ATAACCAAAA-CAC-AGGTTTCCTAACATTAGTC-TTACTGC
i dasNov3.JH567436             C 0 I 412
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221216               4371567  0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH734498               1122726 317 +   1323196 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr8_EQ832819_random   1557067  0 -   3401156 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=625107.000000
s hg38.chr8_KI270814v1_alt         93835 122 +    141812 TCTTCATTGTCTTGATCAAA-CTAAGAATA-TGCTTTC-ATCTTTGGTTAGAGATTTGTGAGTATAGGGAGTAGCTT---AATGTTTATCT-CTTTTGAGTCTT-AGACAA-GGAATTTCTAGCTATAAAT
s ponAbe2.chr8                  59063278 122 + 153482349 TCTTCATTGTCTTGATCAAA-CTAAGAATA-TGCTTTC-ATCTTTGGTTAGAGATTTGTGAGTATAGGGAGTAGCTT---AATGTTTATCT-CTTGTGAGTCTT-AGACAA-GGAATTTCTAGCTATAAAT
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99360226 118 + 108792865 TATTCATCATCGTGATCAAA-C----AAGG-TGCTTTC-ATTTTTGGTTAGAGATTTGTGAGTATAGACCATAGCTT---AGTGTTAAAGT-CTTCTAGGTCTT-AGATAA-GGAATTTCCAACTATAAAT
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24021634 118 +  27210278 TATTAATCGTCGTGATCAAA-C----AATG-CGCTTTC-ATTTTTGGTTAGAGATTTGTGAATATAGACCATAGCTT---AGTGTTAAAGT-CTCCTAGGTCTT-AGATAA-GAAATTTCCAACTATAAAT
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21200721 124 -  23169006 TCTTCATTGTCTTGATCAAA-CTAAGAATGTTGCTTTC-ATTTTTGGTTAGGTATTTGTGAGCATAGAAAGTAGCAC---AGTGTTGAAGT-CTTTTGAGTCTTAAGACAA-GGAATCTCGAACTATAAAC
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19223299 114 -  22931326 TTTT-GTTGTTTTGGTCAAA-CCGAGGAGA-CGCTTTC-CTTCT-GGACAGTGATCTGTGAGTGCAGGAAGCAGCCTGC-AGTGCTG--GT-CT--GGAGTCT-----CAA-AGAACTTCCATCTGTGTAT
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2817299 116 -   6207710 TTTT-GTTGTTTTGGTCAAA-CTGAGGAGA-CGCTTTC-ATTCT-GGCTAGTGATCTGTGAGTGTAGGAAGCAGCCTGC-AGTGCTGAAGT-CT--GGAGTCT-----CAA-AGAACTTCCATCTGTGTAT
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10853213 118 +  17242564 TTTT-GTCGTTTTGGTCAAA-CTAAGGACG-TGCTTTC-ATTTT-GGTCAAGGATCTCTGAGTGTAGGAAGCAGCTTGC-AGTGTTGAAGC-CTTGTGAGTCT-----CAG-AGCATTTACAGCCATGCAT
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84047634 115 +  91571448 TACT-GTTGTTCTGGTCAAA-CTAAGGATG-TGCTTTC-ATTTT-GGTCAGGGATTC-TAACTGTAAGAAGTAGCTTAC-TTT------GT-CTTGCGAGTCTC-AGACAA-AGAATTTCCAAGCAGACAT
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6828683 121 -  14545593 TTTT-GTTGTTTTGGTGAAA-GTAAGGATG-TGCTTTC-ATTTT--GTCAGGGATTTGTGAGCGTGGGAGGTGGCTTAC-AGTGTTGAAGT-CTTGCGAGTCTC-AGACAA-AGAATTTCCAACCACATAT
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134119595 125 + 140925898 TTTT-GTTGTTCTGGTCAAAGTTAAGGATG-TGTTTTC-TTTTCTGGTCAGGGATCTGGGAGTGTAGGGAGAAGCATAC-AGTGCTGAAGTCTTTGCGAGTCTA-AGACAA-AGCATTTCCCGCTGTGTAT
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57851869  89 -  64289059 TTTT-GTTCTTCTGGTCAAG-CTAAGGATG-TGCTTTC-AT--------------TTGAGAGCATAGGGAGCAG------------------CTTGAAAGTCTA-AG-----AGAATTTCCAACTGCATAT
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13623695 123 -  19722643 TTTT-GTTGTTCTGGTTAAA-CTAAGGACA-TGCTTTT-ATTTTTGGTCGGGGACTTGGGAGCGTAGGAAGCAGCTTAC-AGGCCTGAAGA-CTTGCAAGTCTA-AGACAA-AGAATCTCCAGCTGCACAT
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3046306 123 +   4816872 TTTT-GTTGTTCTGGTCAAA-CGAAGGATG-TGCTTTC-ATTTTTGGTCAGGGATTTGAGAGCGTAGGAAGCAGCTTAC-AGGGCTGAAGT-CTTGCAAGTCTA-AGACAA-AGATTTTCCAACTGTATAT
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19421811 119 -  23789964 CTCT-A---ATTTGGTCAAA-CACAAGATG-TGCTTTC-ATTTC-AGTCGAGGGTTTGTGAGGGTAGGAGGAGGCTTAC-GGTGTCGAAGT-CTTGTGAATCTA-AGACAA-AGAGTTTCCAACCACATAT
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27635668 124 -  46401353 TCTTTGCTGTTTGGATAGAA-CTAAAACCG-TGCTTTT-ATTTT-TGTTAG-GATTTGTGAGTATAGGAAGTCGTTTATAAGTGTTGAAGT-CTTATGAGTCCT-AGACACAAGTATTTCCAACTGTAAAT
i loxAfr3.scaffold_20          C 0 I 594
s triMan1.JH594629               9982297 123 +  24341844 TCTTCGCTGTTTGGATAAAA-CGAAAATCG-TGCTTTT-ATTTT-TGTTAG-GATTTGTGAGTGTAGGAAGTTGCTTAT-AGTGCTGAAGT-CTTGTGAGTCCT-AGACACAAGTATTTCCAGCTGTAAAT
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1054784 123 -   2788317 TCTTCATTGTTTTTAAGAAG-CTAAAAATG-TGCTTTCAATTTT-GGTTAG-GATTTGGGAGTTTAAGAGTTAGCTTAC-AGTGCTGAAAT-CTTATGAGAACT-AAACAC-AGTATTTCTAACTGTAAAC
i dasNov3.JH567436             I 412 C 0
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385   0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382   0 -   6649201 I
e hapBur1.JH425491                252157   0 -   1273513 I
e neoBri1.JH422308               3491820   0 -   5414369 I
e araMac1.AOUJ01470298               637   0 -       895 I
e takFla1.AOOT01113665               306   0 +       323 I
e fr3.HE591725                    289786   0 -    411779 I
e ficAlb2.chr2                 148476508   0 + 157563209 I
e anoCar2.chr1                 148577473   4 + 263920458 I
e pseHum1.KB221216               4371567   0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214   0 -  25666195 I
e allMis1.JH734498               1122726 317 +   1323196 I
e falPer1.KB390952               2753956   0 -  18327016 I
e falChe1.KB397350               1707310   0 -   3649919 I
e macEug2.GL109592                105897   0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802   0 +   2102797 I
e melGal1.chr7                  34310641   0 -  38723565 I
e anaPla1.KB742696               1254472   0 -   1270250 I
e amaVit1.AOCU01222764              1324   0 -      1397 I
e apaSpi1.KB929605                579960   0 +   1015623 I
e cheMyd1.KB605988                134509   0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736   1 +    779542 I
e pelSin1.JH207189               1424965   0 +   1874153 I
e melUnd1.JH556573                751858   2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr8_EQ832819_random   1557067   0 -   3401156 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=25660.000000
s hg38.chr8_KI270814v1_alt         93957 11 +    141812 AAGGCCATAAT
s ponAbe2.chr8                  59063400 11 + 153482349 GAGGCCTTAAT
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99360344 11 + 108792865 GAGGCCATGCT
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24021752 11 +  27210278 GAGGCCATGCT
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21200845 11 -  23169006 GAGCCCATATT
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19223413 11 -  22931326 CAGGCCAGGTG
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2817415 11 -   6207710 CAGGCCAGGTG
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10853331 11 +  17242564 TAGGCCAGATT
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84047749 11 +  91571448 TAGGCCTGATT
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6828804 11 -  14545593 TACGCCAGATT
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134119720 10 + 140925898 CAGGCCAG-TT
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57851958 10 -  64289059 GAGGCCAG-TT
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13623818 10 -  19722643 GAGGCCAG-TT
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3046429 10 +   4816872 TAGGCCAG-TT
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19421930 11 -  23789964 TAGACCGAATT
i pteAle1.KB030580             C 0 C 0
s triMan1.JH594629               9982420  1 +  24341844 ----------T
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1054907 11 -   2788317 TAGGCTGTACT
i dasNov3.JH567436             C 0 I 2
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221216               4371567  0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH734498               1122726 317 +   1323196 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr8_EQ832819_random   1557067  0 -   3401156 I
e loxAfr3.scaffold_20           27635792 594 -  46401353 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=1357.000000
s hg38.chr8_KI270814v1_alt         93968 6 +    141812 AAAA--CC
s ponAbe2.chr8                  59063411 6 + 153482349 AAAA--CT
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99360355 6 + 108792865 AAAA--TC
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24021763 6 +  27210278 AAAA--TC
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21200856 6 -  23169006 AAAA--CC
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19223424 6 -  22931326 AAAT--CA
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2817426 6 -   6207710 AAAT--CA
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10853342 6 +  17242564 AAAC--AA
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84047760 6 +  91571448 AAAA--CA
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6828815 6 -  14545593 AAAA--AA
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134119730 6 + 140925898 AAGA--AA
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57851968 6 -  64289059 AAGA--AG
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13623828 6 -  19722643 AAGA--AG
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3046439 6 +   4816872 AAGA--AG
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19421941 6 -  23789964 AAAG--TA
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27636386 4 -  46401353 AAAA----
i loxAfr3.scaffold_20          I 594 C 0
s triMan1.JH594629               9982421 6 +  24341844 aaaacc--
i triMan1.JH594629             C 0 I 54
s dasNov3.JH567436               1054920 4 -   2788317 AAAA----
i dasNov3.JH567436             I 2 C 0
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221216               4371567 0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH734498               1122726 317 +   1323196 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929605                579960 0 +   1015623 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736 1 +    779542 I
e pelSin1.JH207189               1424965 0 +   1874153 I
e melUnd1.JH556573                751858 2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr8_EQ832819_random   1557067 0 -   3401156 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=159830.000000
s hg38.chr8_KI270814v1_alt         93974 32 +    141812 TAAGTGGTAGAGGTTTCTAGGTGCCTGAAGTG
s ponAbe2.chr8                  59063417 32 + 153482349 TAAGTGGTAGAGGTTTCTAGGTGCCTGAAGTG
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99360361 32 + 108792865 TAAATGGCACagggttctaggggccataaggg
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24021769 32 +  27210278 TAAATGGCagagggttctaggagcctaaaggg
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21200862 32 -  23169006 TAAGTGGCAGAGGTGTCTAAGTGCCCAAAGTG
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19223430 30 -  22931326 TTGGT-GCAGATGCTTCTA-GTGTCCAAATTA
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2817432 30 -   6207710 TTGGT-GCagaggtttcta-gtgtccaaatta
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10853348 32 +  17242564 CTGGTGGCAGAGATTGctaggcgtccaaagta
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84047766 32 +  91571448 TCAGTGGCaaaggttgctgggtgtccaaagta
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6828821 32 -  14545593 TCAGTGGCagaggtttccgggcgtccaaagta
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134119736 31 + 140925898 TCAGT-GCAAAGGTTTCTAGGCGTCCAAAGTA
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57851974 31 -  64289059 TCAGT-GCCAAGGTTTCTAGGCATCCAAAGTA
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13623834 31 -  19722643 TCAGT-GCGAAGGTTTCTGGGCATCCGGAGTA
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3046445 31 +   4816872 TCAGT-GGGAAGGTTTCTAGGCATCCAGAGTA
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19421947 32 -  23789964 TCGGTGGCAGAGGTTTCTAGGTGCCCCAAGCA
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27636390 31 -  46401353 TAAGTGGCAATGGTTTC-TAGTGACCAAAGTA
i loxAfr3.scaffold_20          C 0 C 0
s dasNov3.JH567436               1054924 28 -   2788317 TAAG----AATAGTTTCTTGGTGACCAAAGCA
i dasNov3.JH567436             C 0 C 0
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221216               4371567  0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH734498               1122726 317 +   1323196 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr8_EQ832819_random   1557067  0 -   3401156 I
e triMan1.JH594629               9982427 54 +  24341844 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=71176.000000
s hg38.chr8_KI270814v1_alt         94006 46 +    141812 ACTGTCCGCAAGTTTATCCATGTATT-------------------CTCTCTCTCC-----TCCTATTGAA---
s ponAbe2.chr8                  59063449 46 + 153482349 ACTGTCAGCAAGTTTATCCATGTATT-------------------CTCTCTCTCC-----TCCTATTGAA---
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99360393 46 + 108792865 actgtcagcaagtccatccaggtact-------------------ctctctcacc-----tcccagagaa---
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24021801 46 +  27210278 actgtcagcaagcccatccaggtact-------------------gtctcccacc-----tcccagagaa---
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21200894 51 -  23169006 ACTGTCAGTAGGTCCATCTATGTACA-------------------CTCTACCCCTGCCCGCCCCAGAGAA---
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19223460 39 -  22931326 ACTGTCATGAGGTCCATCCACAAACT-------------------CTATTCCCCA-----------GGA----
i vicPac2.KB632437             C 0 I 3
s camFer1.KB017763               2817462 39 -   6207710 actgtcatgaggtccatccacaaact-------------------ctattcccca-----------agg----
i camFer1.KB017763             C 0 I 3
s orcOrc1.KB316907              10853380 39 +  17242564 attgtcagtaggtccatccaggaact-------------------ctgttcccct-----------aga----
i orcOrc1.KB316907             C 0 I 4
s equCab2.chr15                 84047798 39 +  91571448 actgtcggtaggtccatccatgaact-------------------ctattcccct-----------cca----
i equCab2.chr15                C 0 I 1
s cerSim1.JH767782               6828853 39 -  14545593 actctcagtaagcccatccatgaact-------------------ctactcccct-----------aga----
i cerSim1.JH767782             C 0 I 1
s felCat8.chrA3                134119767 39 + 140925898 ACCGTCAGTAGGTCTGTCCACAGACT-------------------CCATCCTCCT-----------GGA----
i felCat8.chrA3                C 0 I 1
s canFam3.chr17                 57852005 39 -  64289059 ACAGTCAGTAGGCCTGCCCACAGACT-------------------CCATCGCCCT-----------ACA----
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13623865 36 -  19722643 ACCGGCAGCTGGCCTGTCCACAGACT-------------------CCATCCGCCC------------------
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3046476 39 +   4816872 ACCGTCAGTAGGCCTGTCCACAAACT-------------------CCATCCCCCT-----------AGC----
i odoRosDiv1.KB229025          C 0 I 456
s pteAle1.KB030580              19421979 39 -  23789964 GCCGTCAGCAGGCCCATCCGTGAGTT-------------------CTAGCTCCCT-----------GGA----
i pteAle1.KB030580             C 0 I 169
s loxAfr3.scaffold_20           27636421 25 -  46401353 AC-----------------ATGTACT-------------------TTATCCCACT-----------AGA-GAA
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9982481 43 +  24341844 ac------------------tgtgctccataaggttttcaatgggtgatttttct-----------aaa-ata
i triMan1.JH594629             I 54 C 0
s dasNov3.JH567436               1054952 34 -   2788317 ACT------AGG--CATCCATGTATT-------------------TCATGTCACT-----------AGA-AAA
i dasNov3.JH567436             C 0 C 0
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221216               4371567  0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH734498               1122726 317 +   1323196 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr8_EQ832819_random   1557067  0 -   3401156 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-12983.000000
s hg38.chr8_KI270814v1_alt         94052  7 +    141812 GTG-------------CCCT
s ponAbe2.chr8                  59063495  7 + 153482349 GTG-------------CGCT
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99360439  5 + 108792865 --g-------------ccct
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24021847  5 +  27210278 --g-------------ccct
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21200945  5 -  23169006 --G-------------CCCC
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19223502  4 -  22931326 ----------------GCCC
i vicPac2.KB632437             I 3 C 0
s camFer1.KB017763               2817504  4 -   6207710 ----------------gccc
i camFer1.KB017763             I 3 C 0
s orcOrc1.KB316907              10853423  4 +  17242564 ----------------gccc
i orcOrc1.KB316907             I 4 C 0
s equCab2.chr15                 84047838  7 +  91571448 aag-------------tcct
i equCab2.chr15                I 1 C 0
s cerSim1.JH767782               6828893  7 -  14545593 aag-------------ccct
i cerSim1.JH767782             I 1 C 0
s felCat8.chrA3                134119807  7 + 140925898 AGG-------------CTCT
i felCat8.chrA3                I 1 C 0
s canFam3.chr17                 57852044  5 -  64289059 --G-------------CTCT
i canFam3.chr17                C 0 C 0
s pteAle1.KB030580              19422187  7 -  23789964 GAA-------------GCCC
i pteAle1.KB030580             I 169 C 0
s loxAfr3.scaffold_20           27636446  1 -  46401353 --G-----------------
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9982524 18 +  24341844 --gatcgccagtcctttctt
i triMan1.JH594629             C 0 I 137
s dasNov3.JH567436               1054986  5 -   2788317 --G-------------TCTT
i dasNov3.JH567436             C 0 C 0
e musFur1.GL896914              13623901  0 -  19722643 C
e odoRosDiv1.KB229025            3046515 456 +   4816872 I
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221216               4371567  0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH734498               1122726 317 +   1323196 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr8_EQ832819_random   1557067  0 -   3401156 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=488774.000000
s hg38.chr8_KI270814v1_alt         94059 114 +    141812 AGccctcaagtcct-----------cctcggacagagcttttggactcctaattt---------gcacaca--agtctaacaagccac-atcatcttgcttttcagttcatagcaCTGTGAAACG--AGACATTAGAGG
s ponAbe2.chr8                  59063502 114 + 153482349 AAcccttaagccct-----------cctcgcacagagcttttggactcctaattt---------gcacaca--agtctaacaagccac-atcatcttgcttttcagttcatagcactgtgaaacg--agatgttagagg
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99360444 116 + 108792865 agccctcaagccct-----------cctcatttgaagcctacggcatcctaattt---------gcacaca--agtctaacaagccactgtcatcttgcttttcagttcacaacaCCATGAAACAA-AGACCCCAGAGG
i calJac3.chr14                C 0 I 4
s saiBol1.JH378126              24021852 114 +  27210278 ag-cctcaagccct------------ctcatttgaagcctatggcatcctaattt---------gcacaca--agtctaacaagccactgttatcctgcttttcagttcacaatactatgaaacga-agacctcagagg
i saiBol1.JH378126             C 0 I 4
s otoGar3.GL873541              21200950 136 -  23169006 AGCCCTCAAGGCCTCACTTCAAATTcctcactcacagcctatggattcctaatatgcatacaaggcataca--agtctaacaagccat-gccatcttgtttttcagttcatagcaccgtggaacaagaaacattagagg
i otoGar3.GL873541             C 0 I 462
s vicPac2.KB632437              19223506 101 -  22931326 AGCACTCAAGCCCT-----------CCTCACTCAAAGCTCACAGACGCCTCCTCT---------GCATACA--AGCCTAACAAACT-G-GTCATCGCGTTTTCCAGCTCACAGTGCTGCGGAACA--------------
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2817508 101 -   6207710 agcactcaagccct-----------cctcactcaaagctcacagacgcctcctct---------gcataca--agcctaacaaact-g-gtcatcgcgttttccagctcacagtgctgcggaaaa--------------
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10853427 101 +  17242564 agccctcgagcgct-----------cctcactcaaagcttacagactcctgctct---------gcgtaca--agcctaacaagct-g-gtcatcgcgtcctccagctcacagcGCTGCGGAACA--------------
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84047845 112 +  91571448 agccct-cagcgtt-----------cctcactcaaagctcacagattcttacttt---------gcctaca--agtctaacaagccaa-atcatcttgttttccagctcagagTGCTGTGGAACAAGAAACACTGG---
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6828900 112 -  14545593 agccct-cagtccc-----------cctcattcaaagcttacagactcttacttt---------gcataca--agtctaacaagccaa-gtcatcttgttttacagctcatggtgctgtggaagaagaaacactgg---
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134119814 114 + 140925898 AGCCCTCCTGCCCT-----------CCTCACTCAAAGCTTAGAGATTTTTACTTT---------TCATACA--AGCCT-ACG-GCCAA-GTTAGCTTCTGCTCCAGCAACCAGTGCTGTGGAGCAAGAAACCGTGGGGG
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57852049 115 -  64289059 AGCTCTCCAGCCCT-----------TCATACTCAAAGCTTAGAGATTTTTACTGT---------GCATACA--AGCCT-AGGAGCCAA-GTCATCCTGAGTGTCAGCTCCCAGCACTGTGGAACAAGAAACAGTGGGGG
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13623901 117 -  19722643 AGCTCTCCAGCCCT-----------CGGCACTCAGAGCTGGGAGATCTTTACTCT---------GCATACAAGAGCCT-GCAAGCCAA-GCCAGCCTGTGCTCCAGCTCCCAGCGCTGTGGAACGAGAAACAGTGGAGG
i musFur1.GL896914             C 0 C 0
s pteAle1.KB030580              19422194  88 -  23789964 AGccct-cagtcct-----------cctcact----------agaatcttacttt---------gcacaca--agtccaacaagccaa-gtcatctcgttctccagctcagggtgc-----------------tggaga
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27636447 105 -  46401353 --CCCTCAAACCCT-----------TTTGACTCAAAACTTACTGACTC--AATTT---------ACATAGA--AGTCTAACATGCCAA-GCCATCTTGGTTTC-------CTGCACagtggaaaaagaaataccagagg
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9982679 105 +  24341844 agccctcaaactct-----------tc--actcaaaacttactgactc--aattt---------atataca--agtctaacaagccaa-gccatcttgttttc-------ctgcacagtggaaaaggaaatgctagagg
i triMan1.JH594629             I 137 C 0
s dasNov3.JH567436               1054991 115 -   2788317 TACACTCAAGTCCT-----------ACTCACTC-AATTTTACTGACTCTTAATTT---------GCATACA--AGTCTGACAAATTAT-GTCATCTTATTTTCTAGTCCTTTTCACAATGGAAAAAGAAACTTCAGAGG
i dasNov3.JH567436             C 0 C 0
e odoRosDiv1.KB229025            3046515 456 +   4816872 I
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385   0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382   0 -   6649201 I
e hapBur1.JH425491                252157   0 -   1273513 I
e neoBri1.JH422308               3491820   0 -   5414369 I
e araMac1.AOUJ01470298               637   0 -       895 I
e takFla1.AOOT01113665               306   0 +       323 I
e fr3.HE591725                    289786   0 -    411779 I
e ficAlb2.chr2                 148476508   0 + 157563209 I
e anoCar2.chr1                 148577473   4 + 263920458 I
e pseHum1.KB221216               4371567   0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214   0 -  25666195 I
e allMis1.JH734498               1122726 317 +   1323196 I
e falPer1.KB390952               2753956   0 -  18327016 I
e falChe1.KB397350               1707310   0 -   3649919 I
e macEug2.GL109592                105897   0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802   0 +   2102797 I
e melGal1.chr7                  34310641   0 -  38723565 I
e anaPla1.KB742696               1254472   0 -   1270250 I
e amaVit1.AOCU01222764              1324   0 -      1397 I
e apaSpi1.KB929605                579960   0 +   1015623 I
e cheMyd1.KB605988                134509   0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736   1 +    779542 I
e pelSin1.JH207189               1424965   0 +   1874153 I
e melUnd1.JH556573                751858   2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr8_EQ832819_random   1557067   0 -   3401156 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=32247.000000
s hg38.chr8_KI270814v1_alt         94173 22 +    141812 CAAGCA-CTGATAGCAGT---AAAAA
s ponAbe2.chr8                  59063616 22 + 153482349 caagca-ctgatagcagt---aaaaa
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99360564 16 + 108792865 CAAGCA-CTA--AGCAGG---A----
i calJac3.chr14                I 4 C 0
s saiBol1.JH378126              24021970 22 +  27210278 caagca-ctgatagcagg---aaaaa
i saiBol1.JH378126             I 4 C 0
s vicPac2.KB632437              19223607 21 -  22931326 -AGGCA-CCAAGGGCAGT---CAAAT
i vicPac2.KB632437             C 0 I 1
s camFer1.KB017763               2817609 21 -   6207710 -aggca-ccaagggtggt---caaat
i camFer1.KB017763             C 0 I 1
s orcOrc1.KB316907              10853528 21 +  17242564 -AGGCA-CCAAGAGCGGT---GGAAG
i orcOrc1.KB316907             C 0 I 1
s equCab2.chr15                 84047957 21 +  91571448 -AGACT-CTGATAGTGGT---AAAAA
i equCab2.chr15                C 0 I 1
s cerSim1.JH767782               6829012 21 -  14545593 -agacg-ctgatagcagt---aaaac
i cerSim1.JH767782             C 0 I 1
s felCat8.chrA3                134119928 23 + 140925898 CAGGCG-CTGGCAGCAGC--AAAACA
i felCat8.chrA3                C 0 I 1
s canFam3.chr17                 57852164 22 -  64289059 CAGATA-CC-ACAGCAGT--CAGAAA
i canFam3.chr17                C 0 I 1
s musFur1.GL896914              13624018 22 -  19722643 CAGATG-CCGGCAGCAGT---AAAAC
i musFur1.GL896914             C 0 I 1
s pteAle1.KB030580              19422282 25 -  23789964 caggcg-ccgacagcagcaaaaaaaa
i pteAle1.KB030580             C 0 I 1
s loxAfr3.scaffold_20           27636552 20 -  46401353 caagcatctgacagcaat---aa---
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9982784 20 +  24341844 caagcatcagacagcaat---aa---
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1055106 16 -   2788317 CAGGAATCTGATAGCA----------
i dasNov3.JH567436             C 0 C 0
e odoRosDiv1.KB229025            3046515 456 +   4816872 I
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221216               4371567  0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH734498               1122726 317 +   1323196 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr8_EQ832819_random   1557067  0 -   3401156 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21201086 462 -  23169006 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=41968.000000
s hg38.chr8_KI270814v1_alt         94195 9 +    141812 GGACAACCA
s ponAbe2.chr8                  59063638 9 + 153482349 ggacaacca
i ponAbe2.chr8                 C 0 C 0
s saiBol1.JH378126              24021992 9 +  27210278 gggcaatca
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21201548 9 -  23169006 GGGCAACCA
i otoGar3.GL873541             I 462 C 0
s vicPac2.KB632437              19223629 9 -  22931326 CAGCAATTA
i vicPac2.KB632437             I 1 I 9
s camFer1.KB017763               2817631 9 -   6207710 cagcagtta
i camFer1.KB017763             I 1 I 9
s orcOrc1.KB316907              10853550 9 +  17242564 CAGCAATTA
i orcOrc1.KB316907             I 1 I 9
s equCab2.chr15                 84047979 9 +  91571448 CAGCAATTA
i equCab2.chr15                I 1 I 4
s cerSim1.JH767782               6829034 9 -  14545593 cagcaacta
i cerSim1.JH767782             I 1 I 4
s felCat8.chrA3                134119952 9 + 140925898 CAGCAATTA
i felCat8.chrA3                I 1 I 4
s canFam3.chr17                 57852187 9 -  64289059 CAGTGATCA
i canFam3.chr17                I 1 I 4
s musFur1.GL896914              13624041 9 -  19722643 CAGCAATCA
i musFur1.GL896914             I 1 I 4
s pteAle1.KB030580              19422308 9 -  23789964 tggcaactg
i pteAle1.KB030580             I 1 I 2
s loxAfr3.scaffold_20           27636572 9 -  46401353 tggcaaaca
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9982804 9 +  24341844 tggcaaata
i triMan1.JH594629             C 0 C 0
e odoRosDiv1.KB229025            3046515 456 +   4816872 I
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221216               4371567 0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH734498               1122726 317 +   1323196 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929605                579960 0 +   1015623 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736 1 +    779542 I
e pelSin1.JH207189               1424965 0 +   1874153 I
e calJac3.chr14                 99360580 0 + 108792865 C
e melUnd1.JH556573                751858 2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr8_EQ832819_random   1557067 0 -   3401156 I
e dasNov3.JH567436               1055122 0 -   2788317 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=194531.000000
s hg38.chr8_KI270814v1_alt         94204 64 +    141812 TTag---------ga-aaaagtcagaatattagcaagcaaatgtcacaaat-ggaagt-c---a-aatagtccaggacta
s ponAbe2.chr8                  59063647 64 + 153482349 ctaa---------ga-aaaagtcagaatattagcaagaaaatgtcacaaat-ggaagt-c---a-aatagtccaggacta
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99360580 63 + 108792865 -------------CA-AAGAGTCAGAACAGTAAAAAGCAAATGTCAGAAAT-GGACAC-CTAGC-AATAGTCCAGGACTA
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24022001 76 +  27210278 aggcaatcaacagca-aagagtcagaatattaaaaagcaaatgtcagaaAT-GGACAC-CTAGT-AATAGTCCAGGACTA
i saiBol1.JH378126             C 0 I 13
s otoGar3.GL873541              21201557 64 -  23169006 ACAG---------GACAAGAGTCAGAATATTAA-ATCCGAATGCTGGAAAT-GGAAAT-C---A-AATATTCTGAAACCA
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19223647 59 -  22931326 --------------a-gagtgtcagaataccaaagagcagatgtcgaaaat-ggaagg-c---g-gagagtctggcacca
i vicPac2.KB632437             I 9 C 0
s camFer1.KB017763               2817649 59 -   6207710 --------------a-gagtgtcagaataccaaagggcagatgtcgaaaat-ggaagg-c---g-gagagtctggcacca
i camFer1.KB017763             I 9 C 0
s orcOrc1.KB316907              10853568 60 +  17242564 --------------A-GGGTGTCAAAATATTAAAAAGTAAATGTTGAAAATGGGAAAG-C---C-GACGGTCTGGCACCA
i orcOrc1.KB316907             I 9 C 0
s equCab2.chr15                 84047992 64 +  91571448 ---------ggaaaa-gagtgtcagaatattaaaaagcagatgtcggaaat-ggaaag-t---t-gatagtctggtgcca
i equCab2.chr15                I 4 C 0
s cerSim1.JH767782               6829047 64 -  14545593 ---------ggaaaa-gagtgtcagaatattaaaaagcagatgtcggaaac-cgaaag-t---c-aacagtctagtgcca
i cerSim1.JH767782             I 4 C 0
s felCat8.chrA3                134119965 54 + 140925898 ---------GGAAAG-GAG----AGAACACCAAA------ACGTCAGAAAT-GGaaag-t---g-catagtctggcacca
i felCat8.chrA3                I 4 C 0
s canFam3.chr17                 57852200 58 -  64289059 ---------GGGAAA-GAGCGTCAGGATACTAAA------GTGTTGGAAAT-GGAAAG-T---A-GGTGGTCTGGCATCA
i canFam3.chr17                I 4 C 0
s musFur1.GL896914              13624054 58 -  19722643 ---------GCACAA-GAGTATCAGAATACTAAA------ATGTCCGAAAT-GGAAAG-T---G-GGTAGTCTGGCACCA
i musFur1.GL896914             I 4 C 0
s odoRosDiv1.KB229025            3046971 58 +   4816872 ---------aaaaAA-AAGTGTCAGGATACTAAA------ATGTCTGAAAT-GGAAAG-T---G-GGTAGTCTGGCACCA
i odoRosDiv1.KB229025          I 456 C 0
s pteAle1.KB030580              19422319 64 -  23789964 ---------aaggaa-aagtgtcagaatataaaa-agcagatatcggaaat-gcagag-g---gagaccgtctgccacca
i pteAle1.KB030580             I 2 C 0
s loxAfr3.scaffold_20           27636581 69 -  46401353 -----gcagggaaaa-aagagtcaggacgttaaatggcagatgtcagaaat-ggaaagtc---a-aacagtcttgaccca
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9982813 63 +  24341844 -----gcaggg--aa-aagagtcagaatgttaaacggcagatgtcagaagt-ggaaagtc---a-aatag----gagcca
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1055122 22 -   2788317 ----------------------------GTTAAAAAACAA-------------------C---A-AATAG-------CCA
i dasNov3.JH567436             C 0 C 0
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221216               4371567  0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH734498               1122726 317 +   1323196 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr8_EQ832819_random   1557067  0 -   3401156 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=23961.000000
s hg38.chr8_KI270814v1_alt         94268 3 +    141812 atc
s ponAbe2.chr8                  59063711 3 + 153482349 atc
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99360643 3 + 108792865 ATC
i calJac3.chr14                C 0 I 11
s otoGar3.GL873541              21201621 3 -  23169006 ATC
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19223706 3 -  22931326 atc
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2817708 3 -   6207710 atc
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10853628 3 +  17242564 ATC
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84048056 3 +  91571448 atc
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6829111 3 -  14545593 atc
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134120019 3 + 140925898 atc
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57852258 3 -  64289059 ATC
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13624112 3 -  19722643 GTC
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3047029 3 +   4816872 ATC
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19422383 3 -  23789964 aac
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27636650 3 -  46401353 ata
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9982876 3 +  24341844 ata
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1055144 3 -   2788317 ATA
i dasNov3.JH567436             C 0 C 0
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221216               4371567 0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH734498               1122726 317 +   1323196 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929605                579960 0 +   1015623 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736 1 +    779542 I
e pelSin1.JH207189               1424965 0 +   1874153 I
e melUnd1.JH556573                751858 2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr8_EQ832819_random   1557067 0 -   3401156 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e saiBol1.JH378126              24022077 13 +  27210278 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=550887.000000
s hg38.chr8_KI270814v1_alt         94271 147 +    141812 taagggcagatat-tcccgtatacca----caagccattg----------aggatgtgtctagatttcagc-acagttcattagtttatgcccaaaatagtgac-ttaaatcttcctc--ccaaaaagatgaagctatgatt------attgcttctgtttaattttaaa----aa
s ponAbe2.chr8                  59063714 147 + 153482349 taagggcagatat-tcccgtatacca----caagccattg----------aggatgtgtctagatttcagc-acagttcattagtttatgcccaaaacagtgac-ttaaatcttcctc--tcaaaaagatgaagctatgatt------attgctactgtttaattttaaa----aa
i ponAbe2.chr8                 C 0 C 0
s otoGar3.GL873541              21201624 147 -  23169006 taagggcagacag-tcccacatacca----taagccaccc----------agggtgcctctagatttcagc-acgattcattactttatgcccaaaacaaaggc-tttaatccttttc--ctcaaaagatgacattgtgatc------agtgcccctgtttaataaggaa----ga
i otoGar3.GL873541             C 0 I 2
s vicPac2.KB632437              19223709 148 -  22931326 taggggcagacag-tcccacacggcagataccaggccctg----------ggggtttctctcaattcctgc-acagttccttaatttatgggtaaactgat-g---taagtcttcctc--cctaaaagatgaaattatgatc------agtccccctgttgaataaaaaa----ga
i vicPac2.KB632437             C 0 I 2
s camFer1.KB017763               2817711 145 -   6207710 taggggcagacag-tcccacacggcagatagcaggccctg----------ggggtttctctcaattcctgc-acagttccttaatttatgggtaaaccgat-g---taagtcttccac--ccaaaaa---gaaattatgatc------agtccccctgttgaataaaaaa----ga
i camFer1.KB017763             C 0 I 2
s orcOrc1.KB316907              10853631 148 +  17242564 TAGGGGCAGGTAC-TCCCACACCGCAGGTACCAGGCACCA----------AGAGTTTCTCTAGATTTCAGC-GCTGCCCCTTAATTTATGCCCCAAACAACGG---TAAGCCTTCCTC--CCCAGAAGA-TAAACTATGACC------AGTGCCCATGTTGAATAAGAAA----GA
i orcOrc1.KB316907             C 0 I 396
s equCab2.chr15                 84048059 147 +  91571448 ta-gggcagatat-tcccacataccacgtacaagccactg----------gggctttctctagaattcagc-acagttcattaatctatgtccaaaacaatgg---taagtcttcc-c--cctaaaagatgaaattatgctc------agtgcccctgtttaataagaaa----ga
i equCab2.chr15                C 0 I 2
s cerSim1.JH767782               6829114 141 -  14545593 ta-gggcagatat-tcccacacaccatgtacaagccactg----------ggtgtttctctagaattcagc-acagttcactaatttatgcccaaaacaa------taagtcttcctc--ccaaaaagatgaaattatgatc------agtgcccctgtttagt----aa----gA
i cerSim1.JH767782             C 0 I 2
s felCat8.chrA3                134120022 148 + 140925898 gaggggcagagag-ccccatacaccacggacaagacacta----------ggggtttctctgtacttcagc-gtagttcattaatttatgccccaaacagtgg--ttacgccttcctc--ccaagaagaggaaattataacc------ggtgtccctgtc--gttgataa----ga
i felCat8.chrA3                C 0 I 2
s canFam3.chr17                 57852261 140 -  64289059 TCAGGGCAGAAAT-CCCCATATACCAAAGGAGATATGATACAGTGGGGGAGGGGTTCCTTCAAATTTCAGT-GTAGTTC----ATTTACACCCAGAAAAACGG---TAAGTCTTCCTC--CCAAAAAGAGGAAATTTTGGTCTCCCTGAGT-------------------------
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13624115 141 -  19722643 TAGGGGCAGAGACGGGCCATAGACCACGTGCAAGATGTCA-----------GGGGTTTTCTAAATTTCGGC-ATAGTTCAGTAATTTAAGCCCAAAAC---------AAGTCTTCCTC--CCAAAAAGAAGAGATCATGATC------AGTGCCCCTGTT--ATTAATAA----GA
i musFur1.GL896914             C 0 I 2
s odoRosDiv1.KB229025            3047032 127 +   4816872 TAGGGGCAGAGAT-CCCCAAAGACCATGTACGAGATACTA-----------GGGGTTCTCTAAATTTCAGC-GTAGTTCATTAATGTATGCCCAAAACAATGG---TAAGTCTTCCTC--CCAAAAAGAGAAAATTATGATT------GGT-------------------------
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19422386 146 -  23789964 gaggggcagacag-tcccata-accacgtacacaccaccg-----------gggtgtctctagatttcagc-acgattcattaatttatgcccaaaagcgtgg---caagtcttcctc--cccaaaagatgaaattatgacc------agtg-cctagtttaattaaaaa----aa
i pteAle1.KB030580             C 0 I 2
s loxAfr3.scaffold_20           27636653 148 -  46401353 caggggcagatgt-tcccatataata----caacctgctg----------agggtttccttacgtttcagc-atagttcaggaatttatgtccaaaacaatgatgaagagtctccccccactcaaaatatgacattatgatt------agtgtccttgtttaataagaaa------
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9982879 142 +  24341844 caggggcagatgt-tcccagataaca----caacccactg----------agagt----ttatgtctcagc-atagttcagtaatttatgtccaaaacaatgatgaagagtcttcccc--cccaaaatatgaaattatgatc------agtgtccttgtttaataagaga------
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1055147 152 -   2788317 TAGGGGCAGATAT-TCCCACATACCA----CAATCTACTG----------AGAGTTTCTGTAGATTTCAACAACAGTTCTATAACTTATGCCCCGAA-AATGATTTAAGTCTTCCCTCCCTCCTAAAGATGAAATTATGATC------AATCTCCCTGTGTAATAAGAAAGTAT--
i dasNov3.JH567436             C 0 C 0
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385   0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382   0 -   6649201 I
e hapBur1.JH425491                252157   0 -   1273513 I
e neoBri1.JH422308               3491820   0 -   5414369 I
e araMac1.AOUJ01470298               637   0 -       895 I
e takFla1.AOOT01113665               306   0 +       323 I
e fr3.HE591725                    289786   0 -    411779 I
e ficAlb2.chr2                 148476508   0 + 157563209 I
e anoCar2.chr1                 148577473   4 + 263920458 I
e pseHum1.KB221216               4371567   0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214   0 -  25666195 I
e allMis1.JH734498               1122726 317 +   1323196 I
e falPer1.KB390952               2753956   0 -  18327016 I
e falChe1.KB397350               1707310   0 -   3649919 I
e macEug2.GL109592                105897   0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802   0 +   2102797 I
e melGal1.chr7                  34310641   0 -  38723565 I
e anaPla1.KB742696               1254472   0 -   1270250 I
e amaVit1.AOCU01222764              1324   0 -      1397 I
e apaSpi1.KB929605                579960   0 +   1015623 I
e cheMyd1.KB605988                134509   0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736   1 +    779542 I
e pelSin1.JH207189               1424965   0 +   1874153 I
e calJac3.chr14                 99360646  11 + 108792865 I
e melUnd1.JH556573                751858   2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr8_EQ832819_random   1557067   0 -   3401156 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e saiBol1.JH378126              24022077  13 +  27210278 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=31828.000000
s hg38.chr8_KI270814v1_alt         94418 20 +    141812 gtaggacatttaaaaataca-----------
s ponAbe2.chr8                  59063861 20 + 153482349 gtaagacatttaaaaataca-----------
i ponAbe2.chr8                 C 0 C 0
s otoGar3.GL873541              21201773 20 -  23169006 gcaagatattttaaaaCAGA-----------
i otoGar3.GL873541             I 2 C 0
s vicPac2.KB632437              19223859 20 -  22931326 gtaagacattttaaagtgca-----------
i vicPac2.KB632437             I 2 C 0
s camFer1.KB017763               2817858 20 -   6207710 gtaagacattttaaagtgca-----------
i camFer1.KB017763             I 2 C 0
s orcOrc1.KB316907              10854175 20 +  17242564 GTAATACATTTTAAAATACA-----------
i orcOrc1.KB316907             I 396 C 0
s equCab2.chr15                 84048208 20 +  91571448 gcaagacattttaaaataca-----------
i equCab2.chr15                I 2 C 0
s cerSim1.JH767782               6829257 20 -  14545593 CGAAGGCATTTTAAGATATA-----------
i cerSim1.JH767782             I 2 C 0
s felCat8.chrA3                134120172 20 + 140925898 gtaagacattttaatataca-----------
i felCat8.chrA3                I 2 C 0
s canFam3.chr17                 57852401 20 -  64289059 TTAAGACATTTTAATATATA-----------
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13624258 18 -  19722643 GTAAGACATTTTAATGTA-------------
i musFur1.GL896914             I 2 C 0
s odoRosDiv1.KB229025            3047159 20 +   4816872 GTAAGACATTTTAATTTATT-----------
i odoRosDiv1.KB229025          C 0 I 200
s pteAle1.KB030580              19422534  7 -  23789964 aaaag-----------ta-------------
i pteAle1.KB030580             I 2 C 0
s loxAfr3.scaffold_20           27636801  3 -  46401353 ----------------------------ata
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9983021  1 +  24341844 ------------------------------a
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1055299 31 -   2788317 ATTAGACATTTAAAAATAGACATTTTCAATA
i dasNov3.JH567436             C 0 C 0
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221216               4371567  0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH734498               1122726 317 +   1323196 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e calJac3.chr14                 99360646 11 + 108792865 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr8_EQ832819_random   1557067  0 -   3401156 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e saiBol1.JH378126              24022077 13 +  27210278 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-22856.000000
s hg38.chr8_KI270814v1_alt         94438 16 +    141812 acacatt-ttc---------------aagaaa-------
s ponAbe2.chr8                  59063881 11 + 153482349 -----tt-ttc---------------aagaaa-------
i ponAbe2.chr8                 C 0 C 0
s otoGar3.GL873541              21201793 16 -  23169006 AGACATT-TTC---------------AGTAGA-------
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19223879 17 -  22931326 gaacatccccc---------------caaaaa-------
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2817878 17 -   6207710 gaacattcccc---------------caaaaa-------
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10854195 16 +  17242564 GGACATT-TTC---------------AATAGA-------
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84048228 15 +  91571448 agaca-t-ttc---------------aacaaa-------
i equCab2.chr15                C 0 I 11
s cerSim1.JH767782               6829277 15 -  14545593 AGACG-T-TCC---------------AATAAA-------
i cerSim1.JH767782             C 0 I 8
s felCat8.chrA3                134120192 16 + 140925898 agacatt-ttc---------------aataaa-------
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57852421 15 -  64289059 -ATCATT-TTC---------------AATAAA-------
i canFam3.chr17                C 0 I 11
s musFur1.GL896914              13624276 16 -  19722643 AGACATT-TTC---------------AATAAA-------
i musFur1.GL896914             C 0 I 220
s odoRosDiv1.KB229025            3047379 31 +   4816872 acgctct-ttctctctcaaatgaagaaataaa-------
i odoRosDiv1.KB229025          I 200 I 24
s pteAle1.KB030580              19422541 16 -  23789964 atacatt-ttC---------------AATAAA-------
i pteAle1.KB030580             C 0 I 4
s loxAfr3.scaffold_20           27636804 11 -  46401353 --------------------------aagaagtT--AAG
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9983022 11 +  24341844 --------------------------aagaagtT--AAG
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1055330 13 -   2788317 --------------------------AATAAGGTTAAAA
i dasNov3.JH567436             C 0 C 0
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221216               4371567  0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH734498               1122726 317 +   1323196 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e calJac3.chr14                 99360646 11 + 108792865 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr8_EQ832819_random   1557067  0 -   3401156 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e saiBol1.JH378126              24022077 13 +  27210278 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=11101.000000
s hg38.chr8_KI270814v1_alt         94454 24 +    141812 A----------GAAA----AGAA------AGTCTATGGAAGT--GC
s ponAbe2.chr8                  59063892 19 + 153482349 A----------GAAA---------------GTCTATGGAAGT--GC
i ponAbe2.chr8                 C 0 C 0
s otoGar3.GL873541              21201809 28 -  23169006 A----------GAAATTAAAGGA------CACCTATGAAAGT--AT
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19223896 34 -  22931326 agaagttaaaagagA----AGGG------AGTTTGCAGGAGT--AC
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2817895 34 -   6207710 cgaagttaaaaGAGA----AGGG------AGTTTGCGGGAGT--AC
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10854211 34 +  17242564 AGAAGTGGAAAGAGA----AGAA------AGTTTACGGGAGC--AC
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84048254 23 +  91571448 -----------gaga----agaa------agtttATGGAAGT--AC
i equCab2.chr15                I 11 C 0
s cerSim1.JH767782               6829300 23 -  14545593 -----------GAGA----AGGA------AGGCTATGGAAGT--AC
i cerSim1.JH767782             I 8 C 0
s felCat8.chrA3                134120208 27 + 140925898 ------------agacattaaaac-----agaagaagtctgt--gt
i felCat8.chrA3                C 0 I 6
s canFam3.chr17                 57852447 29 -  64289059 -----------GAGA----AGAAGTATGTggggcatgtgggt--gc
i canFam3.chr17                I 11 I 174
s musFur1.GL896914              13624512 24 -  19722643 -----------GAGA----AAGAG-----AGGAGACATATGC--GC
i musFur1.GL896914             I 220 I 6
s odoRosDiv1.KB229025            3047434 24 +   4816872 -----------AAGA----GAGAG-----AGAAGACGTAGGT--GT
i odoRosDiv1.KB229025          I 24 I 6
s pteAle1.KB030580              19422561 24 -  23789964 -----------GATA----ACGAA-----CGTTCGTGGACGC--GC
i pteAle1.KB030580             I 4 C 0
s loxAfr3.scaffold_20           27636815 24 -  46401353 ----------AGAAA----AGAA------AGTTTATGGAAGT--AC
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9983033 24 +  24341844 ----------AGAAA----AGAA------AATTTATGGAAGT--AC
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1055343 26 -   2788317 ----------AGAAA----AGAA------AGTTGATGGAAGTAAAT
i dasNov3.JH567436             C 0 C 0
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221216               4371567  0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH734498               1122726 317 +   1323196 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e calJac3.chr14                 99360646 11 + 108792865 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr8_EQ832819_random   1557067  0 -   3401156 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e saiBol1.JH378126              24022077 13 +  27210278 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=365022.000000
s hg38.chr8_KI270814v1_alt         94478 199 +    141812 TGAGGGTGAGAACCTCTGGTAGCAAGATCTCTATA--TTGAGTGATGAGACAAGCTTTATTAATAAGAAGAATCAGCTCATACTTAACCTAAGCC-TG--------------ACAGTGCTGGGCAGAGA-GTCCTGCTGTACCACC----ACCAGTGGAGCCAGG-TAAGGAT-GCCTCTCTGCTAG----AAACAG------CACATATGGAC------------GAAG-CC--ACAA-G-----------CTATGGCT
s ponAbe2.chr8                  59063911 199 + 153482349 TGAGGGTGAGAACCTCTGGTAGCAAGATCTCTATA--TTGAGTGATGAGACAAGCTTTATTAATAAGGAGAATCAGCTCATACTTAACCTAAGCC-TG--------------ACAGTGCTGGGCAGAGA-GTCCTGCTGTACCACT----ACCAATGGAGCCAGG-TAAGGAT-GCCTCTCTGCTAG----ACACAG------CACATATGGAT------------GAAG-CC--ACAA-G-----------CTATGGCT
i ponAbe2.chr8                 C 0 C 0
s otoGar3.GL873541              21201837 219 -  23169006 AGAAGGTGAAGACCTCTGGTGGTAAGATCTCCATA--TAAAGTGATGAGACAAGCTTTATTAAT-AGTAGAATCAGCTTGTGTCTAAACTAAGCC-CC--------------AAAGCACCAGGCAAAGAGGGCTTGCTGTCGAGTT----AGCAATGCAGCCAGGTTAAGGAC-GCTTCCCTGCCAG----GGACGGCTGCCACTCATCCCAAC------------AGAA-CCTGACAA-GTTTTCTTTACTCCATGGCT
i otoGar3.GL873541             C 0 I 311
s vicPac2.KB632437              19223930 176 -  22931326 TGA-GGTGAGGCCCTCTGGTAGGCACAGCTCTGTG--TTAAGCAATGAGGTAAGTTTTATTAACGTGGAGAACCAGCTCGTGTGGG--------C-CG--------------GCAGTGCTGGGAAGAGC-CC--TGCCGCCCTATT----ACCAACGCAGC--AG-TGGGGAT-ACCTCTCCGCCAG----GCGCTGCGCAC-GTCACGTGAAC------------AAAC------------------------------
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2817929 176 -   6207710 TGA-GGTGAGGCCCGCTGGTAGGCAGAGCTCTGTG--TTAAGCAATGAGATAAGTTTTATTAACGTGGAGAACCAGCTCGTGTGGG--------C-CG--------------GCGGTGCTGGGAAGAGC-CC--TGCCGCCCTATT----ACCAACGCAGC--GG-TGGGGAT-GCCTCTCCGCCAG----GCGCCGCGCAC-ATCACGTGAAC------------AAAG------------------------------
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10854245 181 +  17242564 TGAGGGTGAGGACCTCTGCTACAGAGAGCTCTACG--CTAAGCAACGCGATGAGCTTTATTAACGTGGGGAATCAGCTCCCGTAGACC---GACC-CG--------------ACGGTGCTGGGAAGAGA-GC---GTCACCATATT----ACCAAC-CAGC-AGG-TGGGCAG-GCCTCCCCGCCAG----GCCCTGCGCAC-ATCACAGGGAC------------AAAG------------------------------
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84048277 202 +  91571448 TGGAGGTGAGGACCTCTGGTTCAAGGATCTCTGTA--TGAAGCAACGAGCTAAGTGTTATTAATATAGAGAATCAGCTCATCTCTCACCT-AAGA-TT--------------ATGGTGCTGGGAAGAGA-GGC-TGCTGCACTATT----CCCAATGCAGC-AGG-GTGGGAAGGCCTCTCTGCCAA----GTACCACGTGC-ATCATACAGAC------------AAAG-CC--GCAA-G-----------CTACCACT
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6829323 197 -  14545593 TGAAGGTAAGGACCTCTGGGACAAG---------------------AAGCTGAGCTTTACTAACAGGGAG-ATCAGCTCATCTCTCACCT-ACGG-CTGTCACCTACGGCTGATGATGCCGGGACGAGA-GCCTTGCCACATTATT----CCCAACGCAAC-AGG-GCGGGAAAGCCTCTCTGCCAG----GCACCGCGCGC-ATCACACAGAC------------AAAG-CC--ACAG-G-----------CTACCACT
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134120241 204 + 140925898 TGAGGGTGAAGGCCTCTGGCAGGAAGCTCTCTGTACACTAAGCAAGGAGATGAGCTGTATTAACCTGGGGCATCAGCTCACATTTGGGCA-GACG-TG--------------TAGGGGGTGGCAGGAGA-ACACTGCTGGACTGTT----CCCCGCACAGT-GGG-GCGGGAC-GCCTCTCCG-TGG----GCTGTGTCCAC-GTCCCGAGGAC------------ACGGCCC--GCAG-G-----------CCACCACG
i felCat8.chrA3                I 6 C 0
s canFam3.chr17                 57852650 204 -  64289059 TGAGGGTGAAGACCCCTGGCAGGAAGCTCTCCATACTTTAAGCAATGAGATATTCTCTGTTTATCTACAAAATGAGCTCACAGTGACCGG-AACA-TG--------------GAGGATATGACAGAAGA-ACCTGGCTGGGCTACT----ACCCACACAGC-AGG-ATGGGAC-ACCTTTCCTCCAG----GCTCTGCCCAC-CTCACATGAAC------------GAGG-CC--ACAG-G-----------CTACCACA
i canFam3.chr17                I 174 C 0
s musFur1.GL896914              13624542 194 -  19722643 GGAGGGTGAAGACACCTAGCAGAAAGCTCTCTGTCCTCGAAGGGATGTGACACGCTCTGTTAGTCTGGAGACTGAGCTCAGTCAGACC----ACACCG--------------GAGAGCGTGGCAGGAGA-ACCCTG-----CTGAT----ATCCACACGGC-AGG-CTGGGAC-GC--CTCTGCCAG----GCTCTGCCCA--CTCACAAGGAC------------AAGG-TC--GCAG-G-----------CGGCCCCA
i musFur1.GL896914             I 6 C 0
s odoRosDiv1.KB229025            3047464 204 +   4816872 TGAGGGTGAAGACCCCTGGCAGGATGCTCTCCATACTTGAAGCAATGAGATACGCTCTGTTAGTCTGGAGACCGAGCTCACATTTACCTG-GACA-CG--------------GAGGGTGTGGCAGGAGA-ACATGGCTGTTCTGTT----ACCCACACAGC-AGG-GTAGGAC-GCCTCTCTGCCAG----GCTTGGCCCAC-CTCACATGGAC------------AAGG-CC--GCAG-G-----------CTGCCCCA
i odoRosDiv1.KB229025          I 6 C 0
s pteAle1.KB030580              19422585 177 -  23789964 CGAGGGTGAAGACAGGTGGTAGAAAGGTCTCGATA--TTAAGCCATGAGATAAGCTCTATCAGTGTGGAGAATCAGCTC-------------GGA-CC--------------AAGACGGCCGC-----------TGCTGC-CGTCT----ACCAGTGCGGC-ACG-TGGCAGT-GCC-CCCTGCCAG----GCTCTGCACTC-AGAATACGGTC------------AAGG-CC--ACAA-G-----------CC-CCACT
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27636839 211 -  46401353 TAAGGATGAGAGCCTCTGGTAGTAAGATCTTTATA--TTAAGTGCGGAGATAAGCTTTATGAATATGGAAAACCAGCTCATATTTAACCTAAGAC-TG--------------ATGGTGCTGGGAAAACA-GTGTT-CTGTACTATTAATAAATAATGCAACAAGG-TAAGAAC-ACCTCTGTGCTAG-------------GC-TACATATGGACAAAAAAAAAAAAAAAG-GC--ACGCTA-----------ATAATGCT
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9983057 193 +  24341844 TAAGGATGAGAGCCTCTGGTAGTAAGATCTTGGTA--TTAAGTGCCGAGATAAGCTTTATTAAAATGGAAAATCAGCTCATATTTAAACTAAGAC-TG--------------ATGGTGCT-AGAAAACA-GTGCT-CTGTACTATT----AATAATGCAACAAGG-TAAGAAC-GCCTCTCTGCTAG-------------GC-AACATATGGAC------------AAAG-GC--ATGA-G-----------CTACTGCT
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1055369 194 -   2788317 CCAGAGTGAGAACCTCTTATAGTAAGATCTTTATA--TTAAGTCATGAAATAAGTTT--------------ATTAGCTCATATTTAACCTTAGAC-TG--------------GTGATACTGGGAAAAGA-GCACTACTTTGTTAAT----ACCAATGCAGCAAGG-TGAAAAC-ACTTCTCTGTTAGAGAGACTGTACACAT-CACGTATGGAC------------AAAA-CC--ACAA-G-----------TTACCGTT
i dasNov3.JH567436             C 0 C 0
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385   0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382   0 -   6649201 I
e hapBur1.JH425491                252157   0 -   1273513 I
e neoBri1.JH422308               3491820   0 -   5414369 I
e araMac1.AOUJ01470298               637   0 -       895 I
e takFla1.AOOT01113665               306   0 +       323 I
e fr3.HE591725                    289786   0 -    411779 I
e ficAlb2.chr2                 148476508   0 + 157563209 I
e anoCar2.chr1                 148577473   4 + 263920458 I
e pseHum1.KB221216               4371567   0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214   0 -  25666195 I
e allMis1.JH734498               1122726 317 +   1323196 I
e falPer1.KB390952               2753956   0 -  18327016 I
e falChe1.KB397350               1707310   0 -   3649919 I
e macEug2.GL109592                105897   0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802   0 +   2102797 I
e melGal1.chr7                  34310641   0 -  38723565 I
e anaPla1.KB742696               1254472   0 -   1270250 I
e amaVit1.AOCU01222764              1324   0 -      1397 I
e apaSpi1.KB929605                579960   0 +   1015623 I
e cheMyd1.KB605988                134509   0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736   1 +    779542 I
e pelSin1.JH207189               1424965   0 +   1874153 I
e calJac3.chr14                 99360646  11 + 108792865 I
e melUnd1.JH556573                751858   2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr8_EQ832819_random   1557067   0 -   3401156 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e saiBol1.JH378126              24022077  13 +  27210278 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=199606.000000
s hg38.chr8_KI270814v1_alt         94677 64 +    141812 CA-TCC-C-----AA-C--------AGAATCTTACTAGCTCCCTA--GTAAGGTTAGCTATAATGTCTTCTAACTCACATCA
s ponAbe2.chr8                  59064110 64 + 153482349 CA-TCC-C-----AA-C--------AGAATCTTACTAGCTCCTTA--GTAAGGTTAGCTATAATGTCTTCTAACTCACATCA
i ponAbe2.chr8                 C 0 C 0
s vicPac2.KB632437              19224106 57 -  22931326 ---CCA-G------A-C--------AGAAGCTTAC-AGCTCTTCA--TTCTG--TGGCTATGA-GTCTTCTACCTCCAATCA
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2818105 57 -   6207710 ---CCA-T------T-C--------AGAAGCTTAC-AGCTCTTCG--TTCTG--TGGCTATGA-GTCTTCTACCTCCAATCA
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10854426 67 +  17242564 ---CCA-C------A-CTCTCCTCAACAACCTGACTAGCTCTTCA--CTCTT--TGGCTATAATGTCTTCTAACTCCAATCA
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84048479 62 +  91571448 CA-CCC-C-----AA-C--------AGAACCTTATCAGATCTTTA--CTCCA--TGGCTATAATGTCTTCTACCGCCAATCA
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6829520 63 -  14545593 CACCCC-C-----AA-C--------AGAACCTGACTAGCTCTTTA--CTCTG--TGGCTATAATGTGTTCTAACTCCAATCA
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134120445 62 + 140925898 TT-CCC-C-----CA-C--------AGAACGTCACTACCTCCGAA--CTCTG--CTGCTGTGATGCCTTGTCATGTCAATTA
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57852854 63 -  64289059 TA-CCCAC-----AA-G--------AGAACCTCACCAGTGCTTTA--CTCTG--CTGCTAGAATATCTTGTATCGCCAATCA
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13624736 62 -  19722643 CA-CCC-C-----AA-C--------AGAACCTCACTAGCGCTTTG--CTCTG--CTCCTAGTATATCTTGTAACACCGATTA
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3047668 62 +   4816872 CA-CCC-C-----AA-C--------AGAACCTCACTAGTGCTTTA--CTCTG--CTGCTAGAATATCTTGTAATGCCGATCA
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19422762 67 -  23789964 CA-CCC-CAGCAGAA-C--------AGAACCTGCCTAGCTCTTTA--CTCCG--AGGCAACAGTGTCTTCTACCTCCGATCA
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27637050 59 -  46401353 CA-TCC-T-----AA-G--------AGAAACTTACTAGCTCCCCT-----TA--TGGTTATAATGTCTTTTAACTCAGATCA
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9983250 59 +  24341844 CA-TCC-T-----AA-C--------AGAACCTTACTAGCTCCCCT-----TA--TGGTTATAATGTCTTTTAACTCGGGTCA
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1055563 65 -   2788317 CA-TCC-T-----AACC--------AGAACCTTACTGGCTCCCTTTATACTA--TGACCATAATGTCTTTTAACTCTGAGCA
i dasNov3.JH567436             C 0 C 0
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221216               4371567  0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH734498               1122726 317 +   1323196 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e calJac3.chr14                 99360646 11 + 108792865 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr8_EQ832819_random   1557067  0 -   3401156 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21202056 311 -  23169006 I
e saiBol1.JH378126              24022077 13 +  27210278 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=275811.000000
s hg38.chr8_KI270814v1_alt         94741 76 +    141812 TTTGTATTAAAAA---------------------AAGAAAG------A----------AACAAATGGTAACTGATACACATGTTGGTTGGTAGAGCTTTCAGATTCCTCTTTC
s ponAbe2.chr8                  59064174 76 + 153482349 TTTGTATTAAAAA---------------------AAGAAAG------A----------AACAAATGGTGACTGATACACATGTTGGTTGGTAGAGCTTTCAGGTTCCTCTTTC
i ponAbe2.chr8                 C 0 C 0
s otoGar3.GL873541              21202367 97 -  23169006 tctgtctcagaaaacaaaacaaaacaaacaaaataaaaAAC------A----------AAAAACTGATGACTTCTTTGTGTGTTGCTAAGCAGAACTTTCAGATTTCTCTTTC
i otoGar3.GL873541             I 311 C 0
s vicPac2.KB632437              19224163 68 -  22931326 TTTGTGTT-----------------------------AAAA------A----------AAAAATCCAGGACTTATGTGCACATTGGTCAGTAGGACTTTCAGGTTTCTCCTTC
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2818162 72 -   6207710 TTTGTGTTA-------------------------AAAAAAA------A----------AAAAATCCAGGACTTATGTGCACGTTGGTCAGTAGGACTTTCAGGTTTCTCCTTC
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10854493 82 +  17242564 CTTGTGTAA-------------------------AGGAAAA------ACAAACAAACGAAAAAAACATGACTTCTGTGCACGCTGGTCAGTGGGACTTTCAGGTTCTTCTTTC
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84048541 65 +  91571448 TGCGTGT--------------------------------AA------A----------AAAAATTCATGACTTATGTGTATGTTGGTCAGTGGAACCCTCAGGTTCCTCTTTT
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6829583 64 -  14545593 TCTGTGC---------------------------------C------A----------AAAAATCCACGACTTATGAGCACGTTGGTCAGTGGAACTTGCAGGTTCCTCTTTC
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134120507 65 + 140925898 GTTATGT--------------------------------AA------A----------ATAAATTCATGACTTATGTGCATGTTGGTCAGTGGAACTCTCAAATTCCTCTTTC
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57852917 65 -  64289059 TTTGTGT--------------------------------AA------A----------ATAAATTCATGACTCAAGTGCATGATGGTTGGTAGAACTTTCAAATTCCTCTTTC
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13624798 67 -  19722643 GCTGCCT--------------------------------AATGAATGA----------ATGAATTCTTAACTTAGGTGTATGTT----GGTGGAATTTTCAAATTCCTCCTTC
i musFur1.GL896914             C 0 I 441
s odoRosDiv1.KB229025            3047730 65 +   4816872 TTTGCGT--------------------------------AA------A----------ATAAATTCGTGACTTAGGTGCATGTTGGTCGGTGGAATTTTCAAACTCCTCTTTC
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19422829 67 -  23789964 TTTGTCTT------------------------------TAA------A----------AACTATGCATGACTTATGTGCATGTAGGATGGTGGAACGTTCAAGTTCCTCTTTC
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27637109 63 -  46401353 TTTGTGT----------------------------------------A----------AAATAGTCCAGATGTATGTAAATGTTGCTGGCTAGAACTTTCAGGTTCCTCTTTC
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9983309 63 +  24341844 TTTGTAT----------------------------------------A----------AAATAGTCCAGATCTATGTAAATGCTGCTTGGTGGAACTTTCAGGCTCCTCTTTC
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1055628 63 -   2788317 TTTGTGT----------------------------------------A----------AAACATTCATGATTTATATGCATGTGGCTTGCTGGAACTTTCTGGTTCCTCTTTG
i dasNov3.JH567436             C 0 C 0
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221216               4371567  0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH734498               1122726 317 +   1323196 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e calJac3.chr14                 99360646 11 + 108792865 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr8_EQ832819_random   1557067  0 -   3401156 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e saiBol1.JH378126              24022077 13 +  27210278 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=241784.000000
s hg38.chr8_KI270814v1_alt         94817 86 +    141812 GATATGGGTGAGGGA--AAAT-TCCTCAGCCC-AAGGTTAC-CTTGGATTTCACACTCCAACTCCATCCTCAGCTCAGCAC-TGCTG----GTC-AT
s ponAbe2.chr8                  59064250 87 + 153482349 GATATGGGTGAGGGA--AAAT-TCTTCAGCCC-AAGGTTGC-CTTGGATTTCACACTCCAACTCCATCTTCAGCTCAGCACCTGCTG----GAC-AT
i ponAbe2.chr8                 C 0 C 0
s otoGar3.GL873541              21202464 82 -  23169006 AACGTGAATGAGGTG--GAAT-TTCTCAGCCC-AAGGCCAT-----GAGATCTCACTCTACTTCCATCCCTGGCCGAGCACCTGCTG----GGC-C-
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19224231 91 -  22931326 CAAATGAGTGAGGTGACACAT-TCCTCAGCCCCAGGGGTGCGCTCGGCTCTCACACTAGGACACCATCCTGGGCTCGGCACCCGCTG----GTCCC-
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2818234 90 -   6207710 CAAATGAGCGA-GTGACACAT-CCCTCAGCCCCAGGGGCGCGCTCGGCTCTCACACTAGGACTCCGCCCTGGGCTCAGCACCCACTG----GTCCC-
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10854575 89 +  17242564 CGGGTGAGTGAAGTG--AAAT-TCCTCAACCCCAGGGCCACTCTCGGCTCTCGCCCTGGAACTCCGTCCTGGGCTGAGCCTCCGCCG----GCCCC-
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84048606 89 +  91571448 GATGTGAATAAAGTG--AAAT-TCCTCAGCCCTGGGGCTGCTCTCAATTCTCGCACTGGAACTCCATCCTCAGCTCAGCATCCGCTG----GCCAC-
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6829647 88 -  14545593 GATGTGAGTGAAGTG--AAAT-TCCTCAGCCCTGGGGCGGCTCTCAATTCTCGCACTGGAACTCCATCCTT-GCTCAGCATCCGCTG----GCCCC-
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134120572 78 + 140925898 AATGTGAGAGAGGTG--AAATGTCCT-----------CCACCCCCGGATCTGACACCGGGACGCCCTCCTTCCCTGGGCACCCGCTG----GCT-C-
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57852982 89 -  64289059 GATGCAAGTGAAGTG--AGATTTCCTCAGCCGCAGGGCCACCCCCAGATCTCACATCGGAACTCCATCCTTTCCTGGGCATCTGTTG----GCC-C-
i canFam3.chr17                C 0 C 0
s odoRosDiv1.KB229025            3047795 89 +   4816872 GATGAGAGTGAAGTG--AGATTTCCTGAGCCCCAGGGCCGCCCCCAGATCTCACACCGGAACTCTGTCCTTCCCTGGGCATCTGCTG----GCC-C-
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19422896 85 -  23789964 AATACGAGTGAAGTG--AAAT-TCCTCAGCCCTGGGGCTGCTCGCAGATC--GCAGTGGACGCCCATCCTG-CCTCGGCACCCACTG----GCC-C-
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27637172 77 -  46401353 AATGTGTGTGAGATG--AAAT-TCCTCCACC-AAGGGCCACTCCTGAATGTCACACT-GGACTCCACC-----CTCGGCATCTGCTG----------
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9983372 78 +  24341844 AATGTGAGTGAGATG--AAAT-TCCTCAGCCAAAGGGCCACTCCTGGATGTCACACT-GGACTCTATC-----CTCAGCATCTGATG----------
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1055691 86 -   2788317 GATGTGTGTAAAATG--AAAT-TCCTCAGCCACAGGGCCACTCCTGGATGTCACAGT-GAACTCCACCCTT-GCTCAGCACTGATTGGCCC------
i dasNov3.JH567436             C 0 C 0
e musFur1.GL896914              13624865 441 -  19722643 I
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221216               4371567  0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH734498               1122726 317 +   1323196 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e calJac3.chr14                 99360646 11 + 108792865 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr8_EQ832819_random   1557067  0 -   3401156 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e saiBol1.JH378126              24022077 13 +  27210278 I
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=121435.000000
s hg38.chr8_KI270814v1_alt         94903 72 +    141812 TGCTTTTAATGGATGCTGGTCTTCAGGTAGAGTGGG-TTCTGCAGACTATAAGGAC--ATCT-TTCAGTAACAACC
s ponAbe2.chr8                  59064337 72 + 153482349 TGCTTTTAATGGATGCTGGTCTTCAGGTAGAGTGGG-TTCTGCAGACTATAAGGGC--ATCT-TTCAGTAACAACC
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99360657 72 + 108792865 TGGTTTCAATGGATGCTGGTCTTCATGTAGAGCGGG-TTCTGCAGACTGAGAGGAC--ATCT-TTCACTAACAATA
i calJac3.chr14                I 11 C 0
s saiBol1.JH378126              24022090 72 +  27210278 TGCTTTCAACGGATGCTGGTCTTCATATAGAGCGGG-TTCTGCAGACTGAGAGGAC--ATCT-TTCACTAACAATA
i saiBol1.JH378126             I 13 C 0
s otoGar3.GL873541              21202546 54 -  23169006 TGCTGTCAGCTGACTCTGGTCAT-ACACAGAGCTGG-TTCTGTA--------------------CCAGAAACTACA
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19224322 54 -  22931326 -----------------CGCTCTCACCTGGAGCTGG-GTCTAT-GACTGACAGTGC--ATAT-TTCAGGAGGAATC
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2818324 54 -   6207710 -----------------CGCTCTCACCTGGAGCTGG-GTCTGT-GACTGACAATGC--ATAT-TTCAGGAGGAATC
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10854664 55 +  17242564 -----------------TGCCCTCACCTGGAGCAGG-TTCCATGGACCAAGAGTAC--ATAT-CTCACAAGCAATT
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84048695 55 +  91571448 -----------------TACTTTCACCTAGAGCAGC-TTCTGTGCACTGAGAGTAT--AAAT-TTCACTACCAATT
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6829735 55 -  14545593 -----------------TGCTTTCACCTAGAGCATG-TTCTGTGGACTGAGAGTAC--ATAT-TTCACTACCAATT
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134120650 53 + 140925898 -----------------TGATCCCACCTGGGGAAG---TTTGCCACCTGTGAGCAC--TCAG-TTCACTACCAATT
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57853071 54 -  64289059 -----------------TGCTTCCACTTGGGGCAGC--CCTGCAGACAGGGAGCAC--AAAT-ATCACCTCCAATT
i canFam3.chr17                C 0 C 0
s odoRosDiv1.KB229025            3047884 56 +   4816872 -----------------TCTTTCCAGCCGGGGCAGC--TCTGTGGATGGGGAGCACGTATGT-ATCACCCCCAATT
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19422981 53 -  23789964 -----------------GAGT--CACCTAGAACAGG-CTCTGTAGGCTGAGAGCAC--ACGT-TTTACTCAGAGCC
i pteAle1.KB030580             C 0 I 65
s loxAfr3.scaffold_20           27637249 72 -  46401353 -GGTTTCATTTGATGCTGGTTTTCAATTAGAGCAGG-TTATATAGGCTGAGAGTAC--GTATTTTTAGTACCAATT
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9983450 72 +  24341844 -GCTTTCATTTGATGCTGGTCTTCAAACAGAACAGG-TTATATAGCCTGAGAGTAC--GTATCTTTAGAGCCAATT
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1055777 74 -   2788317 AGCTTTCATTTGATGCTGGTCTTGATATAGAGCAGATTTATACAGACTCTGAGTAC--ATATTTTTGCTACCAGTT
i dasNov3.JH567436             C 0 C 0
e musFur1.GL896914              13624865 441 -  19722643 I
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221216               4371567  0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH734498               1122726 317 +   1323196 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr8_EQ832819_random   1557067  0 -   3401156 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=51165.000000
s hg38.chr8_KI270814v1_alt         94975 8 +    141812 CTCTAACA
s ponAbe2.chr8                  59064409 8 + 153482349 CTCTGACA
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99360729 8 + 108792865 TTCTGACG
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24022162 8 +  27210278 TTCTGACA
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21202600 8 -  23169006 TACTTGCA
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19224376 8 -  22931326 CTCTGAAA
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2818378 8 -   6207710 CTCTGAAA
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10854719 8 +  17242564 CTCTGAAA
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84048750 8 +  91571448 CTCTGAAA
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6829790 8 -  14545593 CTCTGAAA
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134120703 8 + 140925898 CTCTGAAA
i felCat8.chrA3                C 0 I 57
s canFam3.chr17                 57853125 8 -  64289059 CTCCGGAA
i canFam3.chr17                C 0 C 0
s odoRosDiv1.KB229025            3047940 8 +   4816872 CTCTGAAA
i odoRosDiv1.KB229025          C 0 C 0
s loxAfr3.scaffold_20           27637321 8 -  46401353 CTCTGAAA
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9983522 8 +  24341844 CTCTGAAA
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1055851 8 -   2788317 TCTTAGAA
i dasNov3.JH567436             C 0 C 0
e musFur1.GL896914              13624865 441 -  19722643 I
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221216               4371567 0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH734498               1122726 317 +   1323196 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929605                579960 0 +   1015623 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736 1 +    779542 I
e pelSin1.JH207189               1424965 0 +   1874153 I
e melUnd1.JH556573                751858 2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr8_EQ832819_random   1557067 0 -   3401156 I
e pteAle1.KB030580              19423034 65 -  23789964 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-29443.000000
s hg38.chr8_KI270814v1_alt         94983 20 +    141812 TCAAAG------------------------ACCTTTCAGAGATC-----
s ponAbe2.chr8                  59064417 20 + 153482349 TCAAAG------------------------ACCTTTCAGAGACC-----
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99360737 44 + 108792865 TTGGAGACAGAGACTATATATCTGTAACAAACCTTTCAGCAACC-----
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24022170 44 +  27210278 TCAGAGACAGAGACTACCTATCTGTAACAAACCTTTCAGCAACC-----
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21202608 18 -  23169006 GCTA--------------------------ACCTTCTGGGAATC-----
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19224384  9 -  22931326 -----------------------------------CCAGAGACA-----
i vicPac2.KB632437             C 0 I 5
s camFer1.KB017763               2818386  9 -   6207710 -----------------------------------CCAGAGACA-----
i camFer1.KB017763             C 0 I 5
s orcOrc1.KB316907              10854727  9 +  17242564 -----------------------------------CCACAGACG-----
i orcOrc1.KB316907             C 0 I 5
s equCab2.chr15                 84048758  9 +  91571448 -----------------------------------TCAGAGACA-----
i equCab2.chr15                C 0 I 6
s cerSim1.JH767782               6829798  9 -  14545593 -----------------------------------TCAGAGACA-----
i cerSim1.JH767782             C 0 I 6
s canFam3.chr17                 57853133  9 -  64289059 -----------------------------------CCAGAGACA-----
i canFam3.chr17                C 0 I 6
s odoRosDiv1.KB229025            3047948  8 +   4816872 -----------------------------------CCA-AGACA-----
i odoRosDiv1.KB229025          C 0 I 5
s loxAfr3.scaffold_20           27637329  7 -  46401353 -----------------------------------CCAACAA-------
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9983530 14 +  24341844 -----------------------------------TCAAGAACAGAGAT
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1055859 14 -   2788317 -----------------------------------TCAAGGACAGAAAT
i dasNov3.JH567436             C 0 C 0
e musFur1.GL896914              13624865 441 -  19722643 I
e felCat8.chrA3                134120711 57 + 140925898 I
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221216               4371567  0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH734498               1122726 317 +   1323196 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr8_EQ832819_random   1557067  0 -   3401156 I
e pteAle1.KB030580              19423034 65 -  23789964 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-4829.000000
s hg38.chr8_KI270814v1_alt         95003 13 +    141812 TGCCCTGCATAGC
s ponAbe2.chr8                  59064437 13 + 153482349 TGCCCTGCATGGT
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99360781 13 + 108792865 TGCACTGAAATGC
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24022214 13 +  27210278 TGCCCTGAAATGC
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21202626 13 -  23169006 CGTTCTGCACTGC
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19224398  8 -  22931326 -----TACAGAGC
i vicPac2.KB632437             I 5 C 0
s camFer1.KB017763               2818400  8 -   6207710 -----TACAGAGC
i camFer1.KB017763             I 5 C 0
s cerSim1.JH767782               6829813  7 -  14545593 ------ACATATC
i cerSim1.JH767782             I 6 I 7
s canFam3.chr17                 57853148  8 -  64289059 -----TGTGTATC
i canFam3.chr17                I 6 I 1
s odoRosDiv1.KB229025            3047961  8 +   4816872 -----TGCATCTC
i odoRosDiv1.KB229025          I 5 I 1
s triMan1.JH594629               9983544  5 +  24341844 -----TATAT---
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1055873  4 -   2788317 -----TACA----
i dasNov3.JH567436             C 0 C 0
e musFur1.GL896914              13624865 441 -  19722643 I
e felCat8.chrA3                134120711 57 + 140925898 I
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221216               4371567  0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH734498               1122726 317 +   1323196 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr8_EQ832819_random   1557067  0 -   3401156 I
e equCab2.chr15                 84048767  6 +  91571448 I
e loxAfr3.scaffold_20           27637336  0 -  46401353 C
e pteAle1.KB030580              19423034 65 -  23789964 I
e orcOrc1.KB316907              10854736  5 +  17242564 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=9278.000000
s hg38.chr8_KI270814v1_alt         95016 8 +    141812 AGTCTTTC
s ponAbe2.chr8                  59064450 8 + 153482349 AGTCTTTC
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99360794 8 + 108792865 AGCCTTTC
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24022227 8 +  27210278 AGCCTTTC
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21202639 8 -  23169006 GGCCTTTC
i otoGar3.GL873541             C 0 C 0
s cerSim1.JH767782               6829827 8 -  14545593 GGTCTTTC
i cerSim1.JH767782             I 7 C 0
s triMan1.JH594629               9983549 7 +  24341844 -AGCTGCA
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1055877 7 -   2788317 -ATCTTTA
i dasNov3.JH567436             C 0 C 0
e musFur1.GL896914              13624865 441 -  19722643 I
e vicPac2.KB632437              19224406 0 -  22931326 C
e camFer1.KB017763               2818408 0 -   6207710 C
e odoRosDiv1.KB229025            3047969 1 +   4816872 I
e canFam3.chr17                 57853156 1 -  64289059 I
e felCat8.chrA3                134120711 57 + 140925898 I
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221216               4371567 0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH734498               1122726 317 +   1323196 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929605                579960 0 +   1015623 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736 1 +    779542 I
e pelSin1.JH207189               1424965 0 +   1874153 I
e melUnd1.JH556573                751858 2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr8_EQ832819_random   1557067 0 -   3401156 I
e equCab2.chr15                 84048767 6 +  91571448 I
e loxAfr3.scaffold_20           27637336 0 -  46401353 C
e pteAle1.KB030580              19423034 65 -  23789964 I
e orcOrc1.KB316907              10854736 5 +  17242564 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=681.000000
s hg38.chr8_KI270814v1_alt         95024 1 +    141812 A
s ponAbe2.chr8                  59064458 1 + 153482349 A
i ponAbe2.chr8                 C 0 C 0
s saiBol1.JH378126              24022235 1 +  27210278 C
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21202647 1 -  23169006 A
i otoGar3.GL873541             C 0 C 0
s cerSim1.JH767782               6829835 1 -  14545593 A
i cerSim1.JH767782             C 0 I 32
s triMan1.JH594629               9983556 1 +  24341844 A
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1055884 1 -   2788317 A
i dasNov3.JH567436             C 0 C 0
e musFur1.GL896914              13624865 441 -  19722643 I
e vicPac2.KB632437              19224406 0 -  22931326 C
e camFer1.KB017763               2818408 0 -   6207710 C
e odoRosDiv1.KB229025            3047969 1 +   4816872 I
e canFam3.chr17                 57853156 1 -  64289059 I
e felCat8.chrA3                134120711 57 + 140925898 I
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221216               4371567 0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH734498               1122726 317 +   1323196 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929605                579960 0 +   1015623 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736 1 +    779542 I
e pelSin1.JH207189               1424965 0 +   1874153 I
e calJac3.chr14                 99360802 0 + 108792865 C
e melUnd1.JH556573                751858 2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr8_EQ832819_random   1557067 0 -   3401156 I
e equCab2.chr15                 84048767 6 +  91571448 I
e loxAfr3.scaffold_20           27637336 0 -  46401353 C
e pteAle1.KB030580              19423034 65 -  23789964 I
e orcOrc1.KB316907              10854736 5 +  17242564 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=2730.000000
s hg38.chr8_KI270814v1_alt         95025 2 +    141812 TT
s ponAbe2.chr8                  59064459 2 + 153482349 TT
i ponAbe2.chr8                 C 0 C 0
s saiBol1.JH378126              24022236 2 +  27210278 TT
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21202648 2 -  23169006 TT
i otoGar3.GL873541             C 0 C 0
s triMan1.JH594629               9983557 2 +  24341844 TT
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1055885 2 -   2788317 TT
i dasNov3.JH567436             C 0 C 0
e musFur1.GL896914              13624865 441 -  19722643 I
e vicPac2.KB632437              19224406 0 -  22931326 C
e camFer1.KB017763               2818408 0 -   6207710 C
e odoRosDiv1.KB229025            3047969 1 +   4816872 I
e canFam3.chr17                 57853156 1 -  64289059 I
e felCat8.chrA3                134120711 57 + 140925898 I
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221216               4371567 0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH734498               1122726 317 +   1323196 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929605                579960 0 +   1015623 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736 1 +    779542 I
e pelSin1.JH207189               1424965 0 +   1874153 I
e calJac3.chr14                 99360802 0 + 108792865 C
e melUnd1.JH556573                751858 2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr8_EQ832819_random   1557067 0 -   3401156 I
e equCab2.chr15                 84048767 6 +  91571448 I
e loxAfr3.scaffold_20           27637336 0 -  46401353 C
e pteAle1.KB030580              19423034 65 -  23789964 I
e cerSim1.JH767782               6829836 32 -  14545593 I
e orcOrc1.KB316907              10854736 5 +  17242564 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=9956.000000
s hg38.chr8_KI270814v1_alt         95027 16 +    141812 AGAAAGTCacttctca
s ponAbe2.chr8                  59064461 16 + 153482349 AGAAAGTCacttctca
i ponAbe2.chr8                 C 0 C 0
s otoGar3.GL873541              21202650 16 -  23169006 AGAAAGCCGCTTCTCA
i otoGar3.GL873541             C 0 C 0
s canFam3.chr17                 57853157 15 -  64289059 -GGGAGTGACCTTTCA
i canFam3.chr17                I 1 I 31
s odoRosDiv1.KB229025            3047970 15 +   4816872 -GGGAATGACCTTCCA
i odoRosDiv1.KB229025          I 1 I 1
s triMan1.JH594629               9983559  9 +  24341844 -------AACCTTTCA
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1055887  9 -   2788317 -------AACTTTTCA
i dasNov3.JH567436             C 0 C 0
e musFur1.GL896914              13624865 441 -  19722643 I
e vicPac2.KB632437              19224406  0 -  22931326 C
e camFer1.KB017763               2818408  0 -   6207710 C
e felCat8.chrA3                134120711 57 + 140925898 I
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221216               4371567  0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH734498               1122726 317 +   1323196 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e calJac3.chr14                 99360802  0 + 108792865 C
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr8_EQ832819_random   1557067  0 -   3401156 I
e equCab2.chr15                 84048767  6 +  91571448 I
e loxAfr3.scaffold_20           27637336  0 -  46401353 C
e pteAle1.KB030580              19423034 65 -  23789964 I
e cerSim1.JH767782               6829836 32 -  14545593 I
e orcOrc1.KB316907              10854736  5 +  17242564 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e saiBol1.JH378126              24022238  0 +  27210278 C
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=72.000000
s hg38.chr8_KI270814v1_alt         95043 11 +    141812 caccggggcct
s ponAbe2.chr8                  59064477 10 + 153482349 caccgggac-t
i ponAbe2.chr8                 C 0 C 0
s triMan1.JH594629               9983568 11 +  24341844 GAATGCAGCCT
i triMan1.JH594629             C 0 C 0
e musFur1.GL896914              13624865 441 -  19722643 I
e vicPac2.KB632437              19224406  0 -  22931326 C
e camFer1.KB017763               2818408  0 -   6207710 C
e odoRosDiv1.KB229025            3047985  1 +   4816872 I
e canFam3.chr17                 57853172 31 -  64289059 I
e felCat8.chrA3                134120711 57 + 140925898 I
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221216               4371567  0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH734498               1122726 317 +   1323196 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e calJac3.chr14                 99360802  0 + 108792865 C
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr8_EQ832819_random   1557067  0 -   3401156 I
e dasNov3.JH567436               1055896  0 -   2788317 C
e equCab2.chr15                 84048767  6 +  91571448 I
e loxAfr3.scaffold_20           27637336  0 -  46401353 C
e pteAle1.KB030580              19423034 65 -  23789964 I
e cerSim1.JH767782               6829836 32 -  14545593 I
e orcOrc1.KB316907              10854736  5 +  17242564 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21202666  0 -  23169006 C
e saiBol1.JH378126              24022238  0 +  27210278 C
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-13517.000000
s hg38.chr8_KI270814v1_alt         95054 67 +    141812 gttgtggggtggggg--------aggggggagggatagcattaggagatatacctaacgctaaatg--acgagtta----a
s ponAbe2.chr8                  59064487 75 + 153482349 gttgtggggtggggggtggggggaggggggagggatagcattaggagatatacctaatgctaaatg--acaagtta----a
i ponAbe2.chr8                 C 0 C 0
s orcOrc1.KB316907              10854741 24 +  17242564 ----------------------------------------------GACATACCTG----TAAATG--ACCTTTCA-----
i orcOrc1.KB316907             I 5 C 0
s odoRosDiv1.KB229025            3047986 31 +   4816872 ---------------------------------------------CAATGTGTCCT----CTAATGCAGCCACTCGTTAA-
i odoRosDiv1.KB229025          I 1 C 0
s loxAfr3.scaffold_20           27637336  6 -  46401353 --------------------------------------------------------------AAGG--AT-----------
i loxAfr3.scaffold_20          C 0 C 0
e musFur1.GL896914              13624865 441 -  19722643 I
e vicPac2.KB632437              19224406  0 -  22931326 C
e camFer1.KB017763               2818408  0 -   6207710 C
e canFam3.chr17                 57853172 31 -  64289059 I
e felCat8.chrA3                134120711 57 + 140925898 I
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221216               4371567  0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH734498               1122726 317 +   1323196 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e calJac3.chr14                 99360802  0 + 108792865 C
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr8_EQ832819_random   1557067  0 -   3401156 I
e dasNov3.JH567436               1055896  0 -   2788317 C
e equCab2.chr15                 84048767  6 +  91571448 I
e triMan1.JH594629               9983579  0 +  24341844 C
e pteAle1.KB030580              19423034 65 -  23789964 I
e cerSim1.JH767782               6829836 32 -  14545593 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21202666  0 -  23169006 C
e saiBol1.JH378126              24022238  0 +  27210278 C
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=1558.000000
s hg38.chr8_KI270814v1_alt         95121 30 +    141812 tgggtgcagcacaccaacatggcacatgta
s ponAbe2.chr8                  59064562 30 + 153482349 tgggtgcagcacaccaacatggcacatgta
i ponAbe2.chr8                 C 0 C 0
s loxAfr3.scaffold_20           27637342  2 -  46401353 ----------------------------TA
i loxAfr3.scaffold_20          C 0 C 0
e musFur1.GL896914              13624865 441 -  19722643 I
e vicPac2.KB632437              19224406  0 -  22931326 C
e camFer1.KB017763               2818408  0 -   6207710 C
e odoRosDiv1.KB229025            3048017  0 +   4816872 C
e canFam3.chr17                 57853172 31 -  64289059 I
e felCat8.chrA3                134120711 57 + 140925898 I
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221216               4371567  0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH734498               1122726 317 +   1323196 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e calJac3.chr14                 99360802  0 + 108792865 C
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr8_EQ832819_random   1557067  0 -   3401156 I
e dasNov3.JH567436               1055896  0 -   2788317 C
e equCab2.chr15                 84048767  6 +  91571448 I
e triMan1.JH594629               9983579  0 +  24341844 C
e pteAle1.KB030580              19423034 65 -  23789964 I
e cerSim1.JH767782               6829836 32 -  14545593 I
e orcOrc1.KB316907              10854765  0 +  17242564 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21202666  0 -  23169006 C
e saiBol1.JH378126              24022238  0 +  27210278 C
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-260.000000
s hg38.chr8_KI270814v1_alt         95151 6 +    141812 tacata--
s ponAbe2.chr8                  59064592 6 + 153482349 tacata--
i ponAbe2.chr8                 C 0 C 0
s equCab2.chr15                 84048773 5 +  91571448 -ACATG--
i equCab2.chr15                I 6 I 2
s loxAfr3.scaffold_20           27637344 6 -  46401353 --TATGCC
i loxAfr3.scaffold_20          C 0 C 0
e musFur1.GL896914              13624865 441 -  19722643 I
e vicPac2.KB632437              19224406 0 -  22931326 C
e camFer1.KB017763               2818408 0 -   6207710 C
e odoRosDiv1.KB229025            3048017 0 +   4816872 C
e canFam3.chr17                 57853172 31 -  64289059 I
e felCat8.chrA3                134120711 57 + 140925898 I
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221216               4371567 0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH734498               1122726 317 +   1323196 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929605                579960 0 +   1015623 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736 1 +    779542 I
e pelSin1.JH207189               1424965 0 +   1874153 I
e calJac3.chr14                 99360802 0 + 108792865 C
e melUnd1.JH556573                751858 2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr8_EQ832819_random   1557067 0 -   3401156 I
e dasNov3.JH567436               1055896 0 -   2788317 C
e triMan1.JH594629               9983579 0 +  24341844 C
e pteAle1.KB030580              19423034 65 -  23789964 I
e cerSim1.JH767782               6829836 32 -  14545593 I
e orcOrc1.KB316907              10854765 0 +  17242564 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21202666 0 -  23169006 C
e saiBol1.JH378126              24022238 0 +  27210278 C
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-5179.000000
s hg38.chr8_KI270814v1_alt         95157 45 +    141812 tgtaacaagcc----------tt----cacgttgtgcacatgtaccctaaaacttagag
s ponAbe2.chr8                  59064598 45 + 153482349 tgtaacaaacc----------tg----cacgttgtgcacatgtaccctaaaacttaaag
i ponAbe2.chr8                 C 0 C 0
s vicPac2.KB632437              19224406 29 -  22931326 TGTAACTGACC----------TT----AA-----TGCAGCCATTCACT-----------
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2818408 29 -   6207710 TGTAACTGACC----------TT----AA-----TGCAGCCATTCACT-----------
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10854765 30 +  17242564 -GGAATGTGCT----------TT----CA-----TGCAACCGTTCATTAA---------
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84048780 39 +  91571448 TGTAACGGACCTTTCCATCCTTT----AA-----TGCAGCAATTCATT-----------
i equCab2.chr15                I 2 C 0
s loxAfr3.scaffold_20           27637350 24 -  46401353 TGCAACTAACC----------TTTCAGAA-----TGCAG--------------------
i loxAfr3.scaffold_20          C 0 I 5
s dasNov3.JH567436               1055896 13 -   2788317 TAAATCTGTCC----------TT------------------------------------
i dasNov3.JH567436             C 0 C 0
e musFur1.GL896914              13624865 441 -  19722643 I
e odoRosDiv1.KB229025            3048017  0 +   4816872 C
e canFam3.chr17                 57853172 31 -  64289059 I
e felCat8.chrA3                134120711 57 + 140925898 I
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221216               4371567  0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH734498               1122726 317 +   1323196 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e calJac3.chr14                 99360802  0 + 108792865 C
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr8_EQ832819_random   1557067  0 -   3401156 I
e triMan1.JH594629               9983579  0 +  24341844 C
e pteAle1.KB030580              19423034 65 -  23789964 I
e cerSim1.JH767782               6829836 32 -  14545593 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21202666  0 -  23169006 C
e saiBol1.JH378126              24022238  0 +  27210278 C
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-11472.000000
s hg38.chr8_KI270814v1_alt         95202 35 +    141812 tataataataataaaaTTTAAAAAAAAAAGAGAAG
s ponAbe2.chr8                  59064643 31 + 153482349 tataataataataaaaTTTAAAAAAAAAA----AG
i ponAbe2.chr8                 C 0 C 0
s equCab2.chr15                 84048819  5 +  91571448 ------------------------AAAAA------
i equCab2.chr15                C 0 C 0
s loxAfr3.scaffold_20           27637379  3 -  46401353 ------------------------TAT--------
i loxAfr3.scaffold_20          I 5 I 2
s triMan1.JH594629               9983579  3 +  24341844 ------------------------TAT--------
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1055909 14 -   2788317 --------TAATGCAGCTT-----AAT--------
i dasNov3.JH567436             C 0 C 0
e musFur1.GL896914              13624865 441 -  19722643 I
e vicPac2.KB632437              19224435  0 -  22931326 C
e camFer1.KB017763               2818437  0 -   6207710 C
e odoRosDiv1.KB229025            3048017  0 +   4816872 C
e canFam3.chr17                 57853172 31 -  64289059 I
e felCat8.chrA3                134120711 57 + 140925898 I
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221216               4371567  0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH734498               1122726 317 +   1323196 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e calJac3.chr14                 99360802  0 + 108792865 C
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr8_EQ832819_random   1557067  0 -   3401156 I
e pteAle1.KB030580              19423034 65 -  23789964 I
e cerSim1.JH767782               6829836 32 -  14545593 I
e orcOrc1.KB316907              10854795  0 +  17242564 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21202666  0 -  23169006 C
e saiBol1.JH378126              24022238  0 +  27210278 C
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-4003.000000
s hg38.chr8_KI270814v1_alt         95237 3 +    141812 AAA--
s ponAbe2.chr8                  59064674 3 + 153482349 AAA--
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99360802 2 + 108792865 -AA--
i calJac3.chr14                C 0 I 1
s loxAfr3.scaffold_20           27637384 3 -  46401353 --ATT
i loxAfr3.scaffold_20          I 2 C 0
s triMan1.JH594629               9983582 3 +  24341844 --ATT
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1055923 3 -   2788317 --ATA
i dasNov3.JH567436             C 0 C 0
e musFur1.GL896914              13624865 441 -  19722643 I
e vicPac2.KB632437              19224435 0 -  22931326 C
e camFer1.KB017763               2818437 0 -   6207710 C
e odoRosDiv1.KB229025            3048017 0 +   4816872 C
e canFam3.chr17                 57853172 31 -  64289059 I
e felCat8.chrA3                134120711 57 + 140925898 I
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221216               4371567 0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH734498               1122726 317 +   1323196 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929605                579960 0 +   1015623 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736 1 +    779542 I
e pelSin1.JH207189               1424965 0 +   1874153 I
e melUnd1.JH556573                751858 2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr8_EQ832819_random   1557067 0 -   3401156 I
e equCab2.chr15                 84048824 0 +  91571448 C
e pteAle1.KB030580              19423034 65 -  23789964 I
e cerSim1.JH767782               6829836 32 -  14545593 I
e orcOrc1.KB316907              10854795 0 +  17242564 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21202666 0 -  23169006 C
e saiBol1.JH378126              24022238 0 +  27210278 C
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=1911.000000
s hg38.chr8_KI270814v1_alt         95240 1 +    141812 A
s ponAbe2.chr8                  59064677 1 + 153482349 A
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99360805 1 + 108792865 A
i calJac3.chr14                I 1 C 0
s saiBol1.JH378126              24022238 1 +  27210278 A
i saiBol1.JH378126             C 0 C 0
s loxAfr3.scaffold_20           27637387 1 -  46401353 A
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9983585 1 +  24341844 A
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1055926 1 -   2788317 A
i dasNov3.JH567436             C 0 C 0
e musFur1.GL896914              13624865 441 -  19722643 I
e vicPac2.KB632437              19224435 0 -  22931326 C
e camFer1.KB017763               2818437 0 -   6207710 C
e odoRosDiv1.KB229025            3048017 0 +   4816872 C
e canFam3.chr17                 57853172 31 -  64289059 I
e felCat8.chrA3                134120711 57 + 140925898 I
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221216               4371567 0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH734498               1122726 317 +   1323196 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929605                579960 0 +   1015623 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736 1 +    779542 I
e pelSin1.JH207189               1424965 0 +   1874153 I
e melUnd1.JH556573                751858 2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr8_EQ832819_random   1557067 0 -   3401156 I
e equCab2.chr15                 84048824 0 +  91571448 C
e pteAle1.KB030580              19423034 65 -  23789964 I
e cerSim1.JH767782               6829836 32 -  14545593 I
e orcOrc1.KB316907              10854795 0 +  17242564 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21202666 0 -  23169006 C
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=926.000000
s hg38.chr8_KI270814v1_alt         95241 1 +    141812 G
s ponAbe2.chr8                  59064678 1 + 153482349 G
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99360806 1 + 108792865 G
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24022239 1 +  27210278 G
i saiBol1.JH378126             C 0 C 0
s canFam3.chr17                 57853203 1 -  64289059 A
i canFam3.chr17                I 31 C 0
s musFur1.GL896914              13625306 1 -  19722643 G
i musFur1.GL896914             I 441 C 0
s loxAfr3.scaffold_20           27637388 1 -  46401353 A
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9983586 1 +  24341844 A
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1055927 1 -   2788317 A
i dasNov3.JH567436             C 0 C 0
e vicPac2.KB632437              19224435 0 -  22931326 C
e camFer1.KB017763               2818437 0 -   6207710 C
e odoRosDiv1.KB229025            3048017 0 +   4816872 C
e felCat8.chrA3                134120711 57 + 140925898 I
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221216               4371567 0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH734498               1122726 317 +   1323196 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929605                579960 0 +   1015623 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736 1 +    779542 I
e pelSin1.JH207189               1424965 0 +   1874153 I
e melUnd1.JH556573                751858 2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr8_EQ832819_random   1557067 0 -   3401156 I
e equCab2.chr15                 84048824 0 +  91571448 C
e pteAle1.KB030580              19423034 65 -  23789964 I
e cerSim1.JH767782               6829836 32 -  14545593 I
e orcOrc1.KB316907              10854795 0 +  17242564 C
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21202666 0 -  23169006 C
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=100628.000000
s hg38.chr8_KI270814v1_alt         95242 14 +    141812 AAAGTCACTTCTCA
s ponAbe2.chr8                  59064679 14 + 153482349 AAAGTCACTTCTCA
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99360807 14 + 108792865 AAAGCCACTTCTCA
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24022240 14 +  27210278 AAAGCCACTTCTCA
i saiBol1.JH378126             C 0 C 0
s orcOrc1.KB316907              10854795 14 +  17242564 AAGGCCACTTCTTA
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84048824 11 +  91571448 ---GCCACTTCTCA
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6829868 14 -  14545593 AAAGCCACTTCTCA
i cerSim1.JH767782             I 32 C 0
s felCat8.chrA3                134120768 14 + 140925898 AAAGCCACCTCTCA
i felCat8.chrA3                I 57 C 0
s canFam3.chr17                 57853204 14 -  64289059 AAAGCTACCTCTTA
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13625307 14 -  19722643 AAAGCTACCTCCCA
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3048017 14 +   4816872 AAAGCTACCTCTCA
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19423099 14 -  23789964 AAAGCCACTTCTCA
i pteAle1.KB030580             I 65 C 0
s loxAfr3.scaffold_20           27637389 14 -  46401353 TCAGCCACTTCTCA
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9983587 14 +  24341844 TAAGACACTTCTCA
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1055928 14 -   2788317 AAAGCCAATTCTCA
i dasNov3.JH567436             C 0 C 0
e vicPac2.KB632437              19224435  0 -  22931326 C
e camFer1.KB017763               2818437  0 -   6207710 C
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221216               4371567  0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH734498               1122726 317 +   1323196 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr8_EQ832819_random   1557067  0 -   3401156 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e otoGar3.GL873541              21202666  0 -  23169006 C
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=184770.000000
s hg38.chr8_KI270814v1_alt         95256 28 +    141812 GCACAGAGGCAGCCCTTGG--AGTCTTTCC
s ponAbe2.chr8                  59064693 28 + 153482349 GCACAGAGGCGGCCCTTGG--AGTCTTTCT
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99360821 28 + 108792865 GAACAGAGGTGGCCCTTGG--AGTCTTTCC
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24022254 28 +  27210278 GCACAGAGGTGTCCCTTGG--AGTCTTTTC
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21202666 30 -  23169006 GCACAGAGGCAGCCCTTGGTAATTCTCTCC
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19224435 10 -  22931326 --------------------AAATCTTTCC
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2818437 10 -   6207710 --------------------AAATCTTTCC
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10854809 29 +  17242564 ACACAGAAGTGG-CCCTGGAAAATCTTTCC
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84048835 30 +  91571448 GCACAGAACTTGCTCTTGGAAAATCTTTCC
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6829882 30 -  14545593 ACAAAGAAGTGGCCCTTGGAAAATCTTTCC
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134120782 30 + 140925898 GCACAGAAGTGGTCCCTGGAAAATCTTTCC
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57853218 30 -  64289059 GCACAGAAGTGGTCCCTGGAAAATCTTTCC
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13625321 30 -  19722643 GCACAGAAGTGGTCCCTGGAAAATCCTTCC
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3048031 30 +   4816872 GCACAGAAGTGATCCCTGGAAAATCTTTCC
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19423113 29 -  23789964 GCACTGCCGT-GCCCTGGGAAAATTCTTCC
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27637403 30 -  46401353 GCACAGAAGTGGCCCTTGGAAAAAAATCTC
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9983601 30 +  24341844 GCACAGAAGTAACCCTTGAAAAATCTTTTC
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1055942 30 -   2788317 ACAAAGAAATGGCCCTTGAAAAATCTTTTC
i dasNov3.JH567436             C 0 C 0
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221216               4371567  0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH734498               1122726 317 +   1323196 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr8_EQ832819_random   1557067  0 -   3401156 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=375019.000000
s hg38.chr8_KI270814v1_alt         95284 43 +    141812 GGGATTTTCACATCCAGCTGGGAAAAGGAA-AAGAACTCCTG-AA
s ponAbe2.chr8                  59064721 43 + 153482349 GGGATTTTCACATCCATCTGGGAAAAGGAA-AAGAACTCCTG-AA
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99360849 43 + 108792865 AGGATTCTCACATCCATCTGGGAAGAGGAA-AAGAACCCCTG-AA
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24022282 43 +  27210278 AGGATTCTCACATCCATCTGGGAAGAGGAA-AAGAACCCCTG-AA
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21202696 43 -  23169006 AGGATTCTCACATCCATCTGAGAAGAGGAA-AGGAGCTGTAG-CA
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19224445 43 -  22931326 AGGATCCTCACAGCCATCTGGTAAGAGGAA-TAGAAGCTGCG-AG
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2818447 43 -   6207710 AGGATCCTCACAGCCATCTGGTAAGAGGAA-TAGAAGCTGCG-AG
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10854838 43 +  17242564 AGGATTCTCACAACCATCTGGTAAGAGGAA-AAGAACCGAGG-AG
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84048865 43 +  91571448 AGGATTTTCACATCAATCTGGTAAGAGGAA-AAGAACCTAAG-AT
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6829912 43 -  14545593 AGGAGTCTCAGATCCATCTGGTAGGAGGAA-AAGAACCTAAG-AT
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134120812 45 + 140925898 AGGATTCTCACACCCATCTGCTAAGAGGAAGAAGAACCTAAGAAA
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57853248 43 -  64289059 AGGATTCTCACATCCATCTGGTAAGAGGAA-AAGAACTTAAG-AA
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13625351 43 -  19722643 AGGATTCTCACATCCATCTGGTAAGAGGAA-AAGAACCTAAG-AA
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3048061 43 +   4816872 AGGATCCTCACATCCATCTGGTAGGAAGAA-AAGAACCTAAG-AA
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19423142 43 -  23789964 AGGAAGCTCACCTCCATTTGGCAAGAGGAA-AGGAACCCGAG-AA
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27637433 42 -  46401353 AGGATTCTCACATCCATCTGGTAAAAGGAA-AAGAACCT-AG-AA
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9983631 42 +  24341844 AAGCTTTTCACATCCATCTGGTAAAAGGAA-AAGAACCT-CG-AA
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1055972 43 -   2788317 AAGATTTTCACATCCTTCTGGTAAAAGGAA-AAGTGCCTAAG-AA
i dasNov3.JH567436             C 0 C 0
s xenTro7.KB021866                 22292 38 +    173346 GGAAGTTTTACTTCAGACTGAGTCTAGATA-AAAATGTG------
i xenTro7.KB021866             N 0 C 0
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221216               4371567  0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH734498               1122726 317 +   1323196 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e monDom5.chr1                 530542741 3769 + 748055161 I
e taeGut2.chr8_EQ832819_random   1557067  0 -   3401156 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=797119.000000
s hg38.chr8_KI270814v1_alt         95327  85 +    141812 ACTGGGCTGACTTCATAACCAGTTTAATTTCACACATGCCA------------------TATTTCTGAAGGCA-CCTTGTTTTTCCCTTCATCCTGCA-TCA-C------TG
s ponAbe2.chr8                  59064764  85 + 153482349 ACTGGGCTGACTTCATAACCAGTTTAATTTCTCACATGCCA------------------TATTTCTGAAGGCA-CCTTGTTTTTCCCTTCATCCTGCA-TCA-C------TG
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99360892  83 + 108792865 ACTGGGCTGACTTCATAAGCACTTTAATTT--CACACGTCA------------------CATTTCTGGAGCTG-TCCGGTCTTTCCATTCATCTTGCA-TCA-C------TG
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24022325  85 +  27210278 ACTGGGATGACCTCATAAGTACTTTAATTTCACACACGTCA------------------CATTTCTGGAGCTG-CCTGGTCTTTCCTTTCATCTTGCA-TCA-C------TG
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21202739  85 -  23169006 ACCAGGCTGACTTGACAACCAGTTTAATTTCACACTTGTTA------------------TATTTCTGGAGCTG-CCTTGTTTTTCCCTTTATCCTGCA-TAA-C------TG
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19224488  83 -  22931326 ACCAGGCTGACTCGATAACTAGCTTAATTTCACAC--GTTA------------------CATTTCTGTAGCTG-CCTTATTTTTCCCTTTATCCTGCA-TGA-C------TG
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2818490  83 -   6207710 ACCAGGCTGACTCGATAACCAGCTTAATTTCACAT--GTTA------------------CGTTTCTGTAGCTG-CCTTATTTTTCCCTTTATCCTGCA-TGA-C------TG
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10854881  85 +  17242564 ACTGGCCTGACTTTATAACCAGCCTAATTTCACACATGTTA------------------CATTTCTGGAGCTG-CCTTGTTTTTCCCTTTATCCTGCA-TTA-C------CG
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84048908  86 +  91571448 GTTGGGTTGACTTTATAACCAGTTTAATTTCATACATGTTA------------------CATTTCCAGAGCTG-CCTTGCTTTTCCCTTTTTCCTGCA-TTATT------TG
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6829955  85 -  14545593 GCTGGGCTGACTTTATAACCAGTTTAATTTCACACATGTTA------------------CATTTCTGGAGCTG-CCTTATTTTTCCCTTTTTCCTGCA-TTA-C------TG
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134120857  85 + 140925898 ACTGGGCTGAGTTTAGAACCAGCTTCATTTCACACATGTTA------------------CATTTCTGGAGCTG-CCTTGTTTCTCCCCCT-TTCTGCATTAA-C------TA
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57853291  85 -  64289059 ACTGGGCTGACTTTATAACCAGTTTAATTTCACACATGTTA------------------CATTTCTGGAGATG-TCTTGTTTTTCCCTTTATCCTGCA-TAA-C------TG
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13625394  83 -  19722643 ACCGGGCTGACTTCATAACCAGTTTCATTTCACAC--GTTC------------------CATTTCTGGAGCTG-CCGTATTTCTCCCCTTATCCTGCA-TAA-C------CG
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3048104  85 +   4816872 ATTGGGCTGACTTTATAACCAGTTTAATTTCACACATGTTA------------------CATTTCTGGAGCTG-CCTTGTTTTTCCCCTTATCCTGCA-TAA-C------TG
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19423185  85 -  23789964 ACCAGGCTGACTCCGTGGCCGGTTTAACTTCACACGTGTTA------------------CGTTTTTGGAGCTG-CCTCGTTCCCCACTTTATCCCGCA-TAA-C------CG
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27637475  85 -  46401353 ACTAAGCTGACTTTATAGCCAGTTTAATTTCACACATGTTA------------------CATTTTGGGAGACT-CCTTGTTTTTCCCTTTATCCTGCA-TAA-C------TG
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9983673  83 +  24341844 ACTAAGCTGACTTTATAACCAGTTTAATTTCACAC--GTTA------------------CATTTTAGGAGATG-CCTTTTTTCTCCCTTTATCCCGCA-TAA-C------TG
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1056015  83 -   2788317 GCTGGGCTGACTTTATAACCAGTTAAATTTCACAC--ATTA------------------TATGTCTGGAGGTA-CCTTGTTTTCTCCTTTATCCTGCA-TAA-C------TC
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530546510 100 + 748055161 acccagctgcccccATCAACAG---AATTTT-TACATGTCATTCAAGGAAGGTGAACTCCATTTC-----ATT-CATTATCCGTCTATATATACTGCG-TAA-TGCTATATG
i monDom5.chr1                 I 3769 C 0
s xenTro7.KB021866                 22330  79 +    173346 ATTGGATTGCT-------GCATCCCAATTTACTGCATGGAA------------------AATCTATCATGATACCCTTTTTTTTCCTTTCTTTCTGCA-CCA-C------TG
i xenTro7.KB021866             C 0 N 0
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385   0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382   0 -   6649201 I
e hapBur1.JH425491                252157   0 -   1273513 I
e neoBri1.JH422308               3491820   0 -   5414369 I
e araMac1.AOUJ01470298               637   0 -       895 I
e takFla1.AOOT01113665               306   0 +       323 I
e fr3.HE591725                    289786   0 -    411779 I
e ficAlb2.chr2                 148476508   0 + 157563209 I
e anoCar2.chr1                 148577473   4 + 263920458 I
e pseHum1.KB221216               4371567   0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214   0 -  25666195 I
e allMis1.JH734498               1122726 317 +   1323196 I
e falPer1.KB390952               2753956   0 -  18327016 I
e falChe1.KB397350               1707310   0 -   3649919 I
e macEug2.GL109592                105897   0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802   0 +   2102797 I
e melGal1.chr7                  34310641   0 -  38723565 I
e anaPla1.KB742696               1254472   0 -   1270250 I
e amaVit1.AOCU01222764              1324   0 -      1397 I
e apaSpi1.KB929605                579960   0 +   1015623 I
e cheMyd1.KB605988                134509   0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736   1 +    779542 I
e pelSin1.JH207189               1424965   0 +   1874153 I
e melUnd1.JH556573                751858   2 +  10614383 I
e taeGut2.chr8_EQ832819_random   1557067   0 -   3401156 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=638539.000000
s hg38.chr8_KI270814v1_alt         95412 56 +    141812 C-AG-AGAAAATTCACAGACTTCCTGAAGGTGAGAATCTCACCCATTAGTAAGAAAAT
s ponAbe2.chr8                  59064849 56 + 153482349 C-AG-AGAAAATTCACAGACTTCCTGAAGGTGAGAATCTCACTCATTAGTAAGAAAAT
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99360975 55 + 108792865 C-AG-AGAAAATTCACCGACTTCC-GCAGGTGAGAATCTCACCCATTAGTAAGAAAAT
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24022410 55 +  27210278 C-AG-AGAAAATTCACAGACTTCT-GCAGGTGAGAATCTCGCCCATTGGTAAGAAAAT
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21202824 56 -  23169006 C-AG-GGAAAATTCAGAGACTTTCTAAAGGTGAGATTCTCGCCCATTAGTAAGAAAGT
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19224571 54 -  22931326 C-AG-AGAGAATT--CAGACTCTCTGAAGTTGAGAATCTCACCCATTAGTAACAAAAT
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2818573 54 -   6207710 C-AG-AGAGAACT--CAGACTCTCTGAAGTTGAGAATCTCACCCATTAGTAACAAAAT
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10854966 55 +  17242564 C-AG-AG-GAATTCACAGACTCTCTGAAGGTGAGAATCTCACCCTTTAGTAACAAAAT
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84048994 57 +  91571448 C-AGAAAAAAATTCATAGACTCTCTGAAGGTGAGAATCTCACCCATTAGTAACAAAAT
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6830040 56 -  14545593 C-AG-AGAAAATTCATAGACTCTCTAAAGGTGAGAATCTCACCCATTAGTAACAAAAT
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134120942 56 + 140925898 C-AG-AGAAAATTCAGAGGCTCTCTGAAGGTGAGAATCTCACCCCTTAGTAACAAGAT
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57853376 56 -  64289059 C-AG-AGAAAATTCATAGGCTCTCTGAAGGTGAGAATCTCACCCATTAGTAACAAAAT
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13625477 56 -  19722643 C-AG-AGAAAATTCAGAGGCTCTGTGAAGGTGAGAATCTCACCCGTTAGTAACAAAAT
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3048189 56 +   4816872 C-AG-AGAAAATTCATCAGCTCTCTGAAGGTGAGAATCTCACTCATTAGTAAAAAAAT
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19423270 56 -  23789964 C-AG-AGAAAATTCATAGACTTCCTGAAGGTGAGGATCTCACCCCTCAGTAACAAAAT
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27637560 56 -  46401353 C-AG-AGAAAATTCATAGACTTTCTGAAGGTGAGAATCTCACCCATTAGTAAGAAAAT
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9983756 56 +  24341844 C-AG-AGAGAATTCATAGACTTTCTGAAGGTGAGAATCTCACCCATTAGTAAGAAAAT
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1056098 54 -   2788317 C-AG-AGAAAAT--ATAGACTTTCTGAAGGTGCAAATCTCACCCATTAGTAAGAAAAT
i dasNov3.JH567436             C 0 C 0
s monDom5.chr1                 530546610 57 + 748055161 CTAA-ATGACATTCATAAAACTGCTGAAGATGAGAATTTCACCCATTAGTAAAAGAAT
i monDom5.chr1                 C 0 N 0
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221216               4371567  0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH734498               1122726 317 +   1323196 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e taeGut2.chr8_EQ832819_random   1557067  0 -   3401156 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=1432644.000000
s hg38.chr8_KI270814v1_alt         95468 168 +    141812 CACACTTTATATATTAAGTTGGCCTTTCCCTGGAGATCTCCTAACTGCTTTATAAACATTCTTTCACACCTCCAAGCAGGTAGGTGG-CAATTGTCATTCTTTCTGGACA-A-GAGGTAGCATTGTGAATCTTAGCCCAACTGAGCTGAAATGTTGTTTAAAT----GTCTGAGG
s ponAbe2.chr8                  59064905 168 + 153482349 CATGCTTTATATATTAAGTTGGCCTTTCCCTGGAGATCTCCTAAGTGCTTTATAAACATTCTTTCACACCTCCAAGCAGGTAGGTGG-CAATTGTCATTCTTTCTGGACA-A-GAGGTAGCATTGTGAATCTTAGCCCAACTGAACTGAAATGTTGTTTAAAT----GTCTGAGG
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99361030 164 + 108792865 CTTGCTT--TATATTAAGCTGGCCTTTCTCTGGAGATCTTCCAACTGCTTTATAAACATTCTTTCACACCTCCAAGAAGGTAGGTGG-TAATTGTTATTCTTTCTGGACA-A-GAGAAAG-AATAAGAGCCTTAGCAAGACAGAACTGAAATG-TGTTTAAAT----GCCTGAGG
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24022465 165 +  27210278 CATGCTT--TATATTAAGCTGGCCTTTTTCTGGAGATCTTCCAACTGCTTTATAAACATTCTTTCACACCTCCAAGCAGGTACGTGG-TAATTGTTATTCTTTCTGGACA-A-GAGGTAGCACTGTGAGCCTTAACAAGACAGAACTGAAATG-TTTTTAAAT----GCCCGAGG
i saiBol1.JH378126             C 0 C 0
s otoGar3.GL873541              21202880 167 -  23169006 CTCACTG--TATATGAAGTTGGCCTTTCTCTGGAGATGTTCCAAATGCTTTATAAACATTCTTTCATG-CTTCAAGTAGGTGAGTGGTTAACTGTTATTCTTTCTGGACAGA-GAGGTAGCATTGAGATGCTTGGCCATACAGAACAGAAATGTTTTTTGAAT----GCCTGAGG
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19224625 166 -  22931326 CTCACTT--TATACTAAGTTGGCCTTTCTTTGGAGATGTTCCAACTGCTTTAGAAACATTCTTCCATGATGAAGAGTAGGTAGGCAG-TAATTATTATTCTTTCTGGACA-A-GAGGTAGAATTGAGAATTTTGGCCATGCAGAACTGAAATGTTTTTTGAAC----GCCTCAGG
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2818627 166 -   6207710 CTCACTT--TATATTAAGTTGGCCTTTCTTTGGAGATGTTCCAACTGCTTTAGAAACATTTTTCCATGATGAAGAGTAGGTAGGCAG-TAATTATTATTCTTTCTGGACA-A-GAGGTAGAATTGAGAATCTTGGCCATGCAGAACTGAAATGCTTTTTGAAC----GCCTCAGG
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10855021 166 +  17242564 CTCACTT--TATATTAAGCTGGCCTTTCTTTGGAGACGGTCCAACTGCTTTATAAACATTCTTTCATGCTGAAGAGCAGGTAGGTGG-TAATTATTATTCTTTCTAGGCA-A-GAGGTAGGATTGAGAGTCTTGGCCATGCAGAACTGAAATGTTTTTTGAAC----GCCTGAGG
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84049051 166 +  91571448 CTCACTT--TATATTAAGTTGGCCTTTCCTTGGAGATGTTCCAACTGCTCCATGAACATTCTTTCAGGCTGCAAAGCAGGTAGATGG-GAATTATTGTTCTTTCTGGACA-A-GAGGTAGAAGTGGGAATCTTGGCCATGCAGAACTGAAATGTTTTTTAAAG----GTGTTTAC
i equCab2.chr15                C 0 I 267
s cerSim1.JH767782               6830096 166 -  14545593 CTCACTT--TATATTAAGTTGGCCTTTCTTTGGAGACGTTCCAACTGCTTTATAAACATTCTTTCAGGCCGCAAAGCAGGCAGGTGG-TAATTATTGTTCTTTCTGGACA-A-GAGGTTGAATTGGGAATCTTAGCCATGCAGAACTGAAATGTTTTTTAAAT----GGCTTTAC
i cerSim1.JH767782             C 0 I 6
s felCat8.chrA3                134120998 161 + 140925898 CTCACTT--TATATTAAGTTGGCCTTTCTCTGGAGATGTTCCAACGGCTTTATAAACATCCTTTCATGCCACAAAGCAGGTAGGCGG-TA---ATTGTTCTGTCCGGACA-A-GGGG-AGAATTGACAATCTCAGCCACCCAAAACTGAAATG-GTTTTAAAT----GCCTGAGA
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57853432 161 -  64289059 CTCACTT--TATATTAAGTTGGCCTTTCTCTGGAGATGTTCCAAAGGCTTTCTAAACATCCACTCACGCCACAAAGCAGGTAGGTGG-TA---ATTCTTCTTTCTGGACA-A-GGGG-AGAATTGACAATCTTAGCCACCCAAAACGGAAATG-TTTTGAAGT----GCCTGAGA
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13625533 161 -  19722643 CTCACTC--TATATTAATTTGGCCTTTCTCTGGAGACGCTCCAACTGCTTTATAAACATCCTCTCTCGCCACAATGCAGGTAGGTGG-TC---ATTTTCCTTTGTGGACA-A-GGGC-AGAATGGACCATCTTAGCCACCCAAGATGGAAATG-TTTTTAAAT----GCCTGAGA
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3048245 161 +   4816872 CTCACTT--TATGTTAAGTTGGCCTTTCTTTGGAGATGTTCCAACTGCTTTATAAATACTCTCTCACACTGCAAAGCAGGTAGGTGG-TA---ATTCTTCTTTCTGGACA-A-GGGG-AGAATTGACAATCTTAGCCACCCAAAACGGAAATG-TTTTTAACT----GCCTGAGA
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19423326 161 -  23789964 CTCACTC--TATATTAAGTTGGTCTTTCTTCGGAGACGTTTCAACTGCTTTATAAACAT-CTTTCACACCACAAAACAGGTAGGTGG-T----AGTATTCTTCCTGGATG-A-GAGGCAGAATCAAGAAACTTAGCCATACGGAACCAAAAGGTTTTTTAAAT----GTCTAGGG
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27637616 166 -  46401353 CTCACTT--TATACTAAGCTGGCCTTTCTCTGGAGATGTTCCAGCTGCTTTATCAACATTCTTTCATGCCACAAAGCAGGCAGGTAG-TAATTATCCTTCTTTCTGGACA-A-GGGCTAGAATTGAGAATCTCAGCCATACAGAATTGAAATGTTTTCTCAAT----GTCTGAGG
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9983812 170 +  24341844 CTCACTT--TATACTAAGCTGACCTTTCTTTGGAGATGTTCCAACTGCTTTATAAACATTCTTGCATGCCACAAAGCAGGTAGGTAG-TAATTATTATTCCCTCTGGACA-A-GGGGTAGAATTGAGAATCTCAGCCATATAGAATTGAAATGTTTTTTAAATAAGAATCTGAGG
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1056152 159 -   2788317 CTTACTT--TATAGTAAGTTGCCCTTTCTTTGGAGACATTCCAACTGCTTTATAAACATTCTTTCATGCCACAAAGCAGGTAGGCAG-TAATTACTATTCTCTCTGGACA-ATGGGGTAGAATTGAGAATCTTAGCTATATACAATTAAAATGTTTTGCTTGT------------
i dasNov3.JH567436             C 0 C 0
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385   0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382   0 -   6649201 I
e hapBur1.JH425491                252157   0 -   1273513 I
e neoBri1.JH422308               3491820   0 -   5414369 I
e araMac1.AOUJ01470298               637   0 -       895 I
e takFla1.AOOT01113665               306   0 +       323 I
e fr3.HE591725                    289786   0 -    411779 I
e ficAlb2.chr2                 148476508   0 + 157563209 I
e anoCar2.chr1                 148577473   4 + 263920458 I
e pseHum1.KB221216               4371567   0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214   0 -  25666195 I
e allMis1.JH734498               1122726 317 +   1323196 I
e falPer1.KB390952               2753956   0 -  18327016 I
e falChe1.KB397350               1707310   0 -   3649919 I
e macEug2.GL109592                105897   0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802   0 +   2102797 I
e melGal1.chr7                  34310641   0 -  38723565 I
e anaPla1.KB742696               1254472   0 -   1270250 I
e amaVit1.AOCU01222764              1324   0 -      1397 I
e apaSpi1.KB929605                579960   0 +   1015623 I
e cheMyd1.KB605988                134509   0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736   1 +    779542 I
e pelSin1.JH207189               1424965   0 +   1874153 I
e melUnd1.JH556573                751858   2 +  10614383 I
e taeGut2.chr8_EQ832819_random   1557067   0 -   3401156 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=2305928.000000
s hg38.chr8_KI270814v1_alt         95636 299 +    141812 TAAAGCAAAAGGAAGGTTTGGAAAATATGAGCTAGGATAAATGTGGCCAAAAATAGGAAGAACAATGGCATATAAA--ATTCCAAAAA---AGAATTCTCCTATAATCAGCTCACTTTCTGC-CCAGCTTCCTAAAAGCCACGTC-TTGGCC-TTCCTCTTGTTGTGCAG--CTTCCACACTGACACTGACCTGGAAAATCAGGTGAGGTG------AGTGCTAATTTTGGCTCAAATAAGAAA--TTTTCTC----TCTCTTTGATCTTTGTCAGGAAACAGGATCAACAATCTGAATTCCATCAAGTTCAAGCTGAAAC
s ponAbe2.chr8                  59065073 299 + 153482349 TAAAGCAAAAGCAAGGCTTGGAAAATATGAGCTAGGATAGATGTGGCCAAAAATAGGAAGAAGAATGGCATATAAA--ATTCCAAAAA---AGAATTATCCTATAATCAGCTCACTTTCTGC-CCAGCTTCCTAAAAGCCACGTC-TTTGCC-TTCCTCTTGTTGTGCAA--CTTCCACACTGACACTGACCTGGAAAATCAGGGGAGGTG------AGTGCTAATTTTGGCTCAAATAAGAAA--TTTTCTC----TCTCTTTGATCTTTGTCAGGAAACAGGATCAACAATCTGATTTCCATCAAGTTCAAGCAGAAAC
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99361194 302 + 108792865 GAAAGCAAAATCAAGGCTTGGAAAATATGAGATAAGACAGATGTGACCAAAAATAGGAAGAAGAATGGTATACAAA--ATTCCAAAAAAGGAGAATTCTCCTATAATCTGCTCCCCGTCTGC-CCAGCTTCACAGGAGCCGCCAC-TTGGCA-CTCCTCTGGCTGTGCAG--CTTCCACACCAGCGCTGGCCTGGAAAATCAGGCGTGGTG------AGTGCTAATTTTGGCTCAAATAAGAAA--TTTTCTC----TCTCTTTGATCTTTGCCAGGAAACAGGATCAACAATCTGACTTCCATAAAGTGCAAGCTGAAAC
i calJac3.chr14                C 0 C 0
s saiBol1.JH378126              24022630 302 +  27210278 GAAAGCAAAATCAAGGCTTGGAAAATATGAGATAAGACAGATGTGACCAAAAATAGGAAGAAGAATGGTATACAAA--ATTCCAAAAAAGGAGAATTCTCCTATAATCTGCTCCCCGTCTGC-CCAGCTTCACAGGAGCCGCCAC-TTGGCC-CTCCTCTGGCTGTGCAG--CTTCCACACCGGCGCTGGCCTGGAAAATCAGGCGTGGTG------AGTGCTAATTTTGGCTCAAATAAGAAA--TGTTCTC----TCTCTTTGATCTTTGCCAGGAAACAGGATCAACAATTTGACTTCCATAAAGTGCAAGCTGAAAC
i saiBol1.JH378126             C 0 N 0
s otoGar3.GL873541              21203047 292 -  23169006 GAGAGCAAAAGCAAGGCTTGGAAACTATGAGATAGGACAGAAGTGACCAAAAATAGGAAGAAGGATGGTATACAAA--ATTCCAAAAAAGGAGAATTCCCCTATAATCAGCTCACTCTCAGC-CCTG--TCTCAGGAGCTGCCGT-CTGGCA-TTCCTACGG-TGTGCCG--CTTCCATACGGGCATGGGCCTGGGAAATTAGGCCTGGTG------AGTGCTAATTGTGCCTAAAATAAGAAA--TTTTCTC----TCTGTTTGATCCTTTC-------CAGAATCAATAATCCAGACTCCTTAAAGTGAAAGTTGAAAC
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19224791 306 -  22931326 GAAAGCAAAAGCAAGGCTTTAAAAATAAGAGATAGGACAGATGTGACCAAAAATAGGAGTAAGAACGGTATACAAA--ATACCAAAAAAGGAGAATTCTCCTATAATCAGCTCATTCTCAGTGACAGCATCTTAGACGCAGCCCC-GCAGTGTTCCTTACGG--GTGTAG--CTTCAACAGCAGCACAGGCCTGAGAAGCCGGGCCTGCTG------AGTGCTAACGTGGGCACGAGTCAGACACATTCTCCC--TCTCTCTTGGATCTTTGCTGGGAAACAGGATCAAAAATCCCCACTCCATAAAGTAAAAGCTGTAAC
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2818793 306 -   6207710 GAAAGCAAAAGCAAGGCTTTAAAAATAAGAGATAGGACAGATGTGACCAAAAATAGGAGTAAGAATGGTATACAAA--ATACCAAAAAAGGAGAATTCTCCTATAATCAGCTCATTCTCAGTGACAGCATCTTAGACGCAGCCCC-GCAGCGTTCCTTACGG--GTGTAG--CTTCAATAGCAGCACAGGCCTGAGAAGCCGGGCCTGCTG------AGTGCTAACGTGGGCACAAGTCAGACACATTCTCCC--TCTCTCTTGGATCTTTGCTGGGAAACAGGATCAAAAATCCCCTCTCCATAAAGTAAAAGCTGTAAC
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10855187 285 +  17242564 AAAAGCAAAAGCAAGGCTTTAAAAATAAGAGATAGGACAGATGTGACCAAAAATAGGAGTAAGAATGGTATACAAA--ATACCAAAAAAGGAGAATTCTCCTATAAGCAACTCACTCTCGGCGACAGCTTCTTAGAAGCAGCCAC-TTGGCG-TCCTTACAG--CTGCAGACCTTCAACACCAGCCCTGGCCTGGAAAGCCCGGCCTGGTG------AACATGAATTTGGGCACAAATAAGGTA------------------------TTTGCTGGGAAACAGGATCAAAAACCCTAACTCCATAAAGTACAAGCAGAAAC
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84049484 304 +  91571448 AAAAGTAAAAGCAAGGCTTTAAAAATAAGAGACAGGACAGATATAATGAAAAATAGGAATAAGAATGGTATAGAAA--ACGCCAAAAAAGGAGAATTCTCCCATAACCAGCTCACTCTCAGCAGCAGCTC-TCAGAAGAGGCCAC-TTGGAG-CTCTGAGGGCCGTGCAG--CCTCAACACCGGCATTGGCCTGGAAAATCAGGCCTGGTG------AATGCTAATTTTGGCACAAATAAGAGC--TTTTCTC--TCTCTCTCTGATATTTGCCGGGAAACAGGATCAACAATCCTAACTCCATCAAGTAAAAGCCGAAAC
i equCab2.chr15                I 267 C 0
s cerSim1.JH767782               6830268 287 -  14545593 AAAAGTAAAAGCAAGGCTTTAAAAATAAG----AGGACAGATATGACCAAAAATAGGAAAAAGAATGGTACAGAAA--ATACCAAAAAAGGAGAATTCTCCTATA--CAGCTCAGTCTCAGCACCAGCTT--------------C-TCGAAG-CTCCTACGGCGGTGCAG--CTTCAACACCAGCACTGGACTGGAAAATCAGGCCTGGTG------AATGCTAATTTTGGCGCAAATAAGAGC--TTTTCTCTTTTTCTCTCTTGTATTTGCCAGGAAACAAGATCAACAATCCTAACTCCATAAAGTAAAAGCCAAAAC
i cerSim1.JH767782             I 6 C 0
s felCat8.chrA3                134121159 309 + 140925898 GAAAGTAAGAGCAAGGCTGTAAAAATAAGAGATAGGACAGATGTGACCAAAAATAGGAATAAGAATGGTATACAAA--ATACCAAAAAAGGAGAATTTTCCTGTAATCAGCTCGCTCTCAGCAACAGCTTCTTAGAAGCGGCCTC-TTGGTG-CTCTGGTGGCCGGGCAG--CTTTGCCGTCACCGCCGGCCTGGAAAATCAGGCCTGGTGATGCTAAAG-CTAATTTTGGTACCAATAAGACA--TTCTCCC--TCTCTCTCTGATCTTTGCCA-GAAACAGGATCAACAACCCCAACTCCACGAAGTAAAAGCTGAAAC
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57853593 303 -  64289059 GAAAGTAAAAGCAAGGCTTTAAAAATAAGAGATAGGATAGATGTGACCAAAAATAGGACTAAGAATGGTATACAAA--ATACCAAAAAAGGAGAATTCTCCTGTAATCGGCTCACTCTCAGCAACAGCTCCTTAGAGGCGGCTAC-TCGGTG-GTCTGGTGGCTGGGCAG--CTGTGCCACCAACACTGGCCCAGAAAAGTAGGCCTGGTA------AAT-CTAATTTTGGCACAAAAAAGAGA--TTTTCCC--CCTCACTCTGATCTTTGCCA-GAGGCAGGGTCAACAGCCCTAACTCCATAAAGCAAAAGCTGAAAC
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13625694 304 -  19722643 GAAAGGAAAAGCAAGGCTTTAAAAATAAGAGATAGGACAGATGTGACCAAAAATAGGAGTAAGAATGGTATACAAA--ATACCAAAAAAGGAGAATTCTCCTGTAATCCGCTCACTCTCAGCAACAGCTTCTTAGAAGCGGCCCCTTCGGTG-CTCTAGTGGCTGGATGG--CTTCGCCACGGGCCCTGGCCCAGAAAATCAGGCCTGGTG------AAT-TTAATTTTGGCACAAGTAAGAGA--TTTTCTC--CCTCTCTCTGATCTTTGCCA-GAGCCAGGATCAACAACCTTAACTCCATAAAATACAAGCTGAAAG
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3048406 302 +   4816872 GAAAGTAAAAGCAAGGCTTTAAAAAGAAGAGATAGGACAGATGTGACCAAAAATAGGAATAAGAATGGTATACAAA--ATACCAAAAAAGGAGAATTCTCCTGTAATCGGCTGGCTCTCAGCAACAGCTTCTTACAAGGGGCCAC-TCGGTG-CTCCGGTGGCTGGGCAG--CTTTGCCAATGGCACCGGCCCAGAAAATCAGGCCTGGTG------AAT-CTAATTTTGGCACAAATAAGAGA--TTTTCTC--CCTCTCTCTGATCTTTGCCA-GACACAGGATCAACAACCCTAACTCCATAAATTA-AAGCTGAAAG
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19423487 292 -  23789964 ------AAAAGCAAGGCTTCAAAAATAAAAGATAGGACAGATGTGACCAAAAACAGGAATAAGAATGGTATACAAA--ACACCAAAAAAAGAGACTTCTCCTATAATCGGCTCA--CTCAGCAACGGCGTCTTACAAGCGGCCAC-TTGGCG-TT--GACGGCCGTACGG--CCTGAATGCCAACACCGGCCTGGAGAACCAGGCCTGGTC------AAAGCCAGTGTGGGCACAAATAAGAGA--GTTTCTC--TCTTTTT---ATCTTTGCCGGGAAACAGGATCGACAATCCTAACTCCATAAAGTCAAAGCTGAAAC
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27637782 270 -  46401353 AAAAGCAAAGGCAGGGCTTTTGAAATAAGAGACAGGACAGACAGGACCAAAAACAGGGATAAGGATGGTATACAAA--GTACCCAAAGAAAAGAATTCTCCTATAATCAGCTCACTCTCAACAA-GGCTTCTCAGAAGCGGCCAC-TCGGCA-TTTCTATAGCTGTACA----------------------------------GCAAGGGG------AATGCTAATTCTGGGGCGAAGAAGAGC--TTTTCTC----TCTCTCTGATCTTTGCTTAGAAACTGGATCAAAAATCCTAACTCCATGAAGGAAAAGCTGACAC
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9983982 270 +  24341844 AAAAGCAAAGGCAAGGCTTTTAAAATAGGAGATACGACAGATAGGACCAAAAATAGGAATCAGAATGGTATACAAA--ATACCAAAAGAAGAGAATTCTCCTATAATCAGCTCACTCTCAACAACTGCTTCTCAGAGGCGGCCAC-TCTGCA-TTTCTATGCCTGTATA----------------------------------GCACGGGG------GATGCTAATTCTGGCGCAAATAAGAGA--TGTTCTC----TCTCTCTGATCTTTGCTGGGAAACAGGATC-ACAATCCTAACTCCGTAAAAGAAAAGCTGACAC
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1056311 296 -   2788317 -------AAAGCATGGCTTCAAAAATAAGAGATAAGTCAGAAGTGACCAAAAATAGGAATAAGAATGGTATACAAAATATATCAGAAGAGGAGAAGTCTCCTATAATCAGCTCACTCTCAGCAACAGCTTCTTAGAAGATACCGC-TTTGCA-TTTCTATGGTTGTACAA--CTTCAACACCGGCACTGGCCTAGAAAATCAGACATGGTG------AATGCTAATTTTGACTCAAATAAGTGA--TTTTCTT----TCTCTCTGAGCTTTGCTGGGAAACAGAATCAGTAATCCTAACTC--TAAAGTAAAATCTGAAGC
i dasNov3.JH567436             C 0 C 0
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385   0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382   0 -   6649201 I
e hapBur1.JH425491                252157   0 -   1273513 I
e neoBri1.JH422308               3491820   0 -   5414369 I
e araMac1.AOUJ01470298               637   0 -       895 I
e takFla1.AOOT01113665               306   0 +       323 I
e fr3.HE591725                    289786   0 -    411779 I
e ficAlb2.chr2                 148476508   0 + 157563209 I
e anoCar2.chr1                 148577473   4 + 263920458 I
e pseHum1.KB221216               4371567   0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214   0 -  25666195 I
e allMis1.JH734498               1122726 317 +   1323196 I
e falPer1.KB390952               2753956   0 -  18327016 I
e falChe1.KB397350               1707310   0 -   3649919 I
e macEug2.GL109592                105897   0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802   0 +   2102797 I
e melGal1.chr7                  34310641   0 -  38723565 I
e anaPla1.KB742696               1254472   0 -   1270250 I
e amaVit1.AOCU01222764              1324   0 -      1397 I
e apaSpi1.KB929605                579960   0 +   1015623 I
e cheMyd1.KB605988                134509   0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736   1 +    779542 I
e pelSin1.JH207189               1424965   0 +   1874153 I
e melUnd1.JH556573                751858   2 +  10614383 I
e taeGut2.chr8_EQ832819_random   1557067   0 -   3401156 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=7279.000000
s hg38.chr8_KI270814v1_alt         95935 1 +    141812 T
s ponAbe2.chr8                  59065372 1 + 153482349 T
i ponAbe2.chr8                 C 0 C 0
s calJac3.chr14                 99361496 1 + 108792865 T
i calJac3.chr14                C 0 N 0
s otoGar3.GL873541              21203339 1 -  23169006 T
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19225097 1 -  22931326 T
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2819099 1 -   6207710 T
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10855472 1 +  17242564 T
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84049788 1 +  91571448 T
i equCab2.chr15                C 0 C 0
s cerSim1.JH767782               6830555 1 -  14545593 T
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134121468 1 + 140925898 T
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57853896 1 -  64289059 C
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13625998 1 -  19722643 C
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3048708 1 +   4816872 C
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19423779 1 -  23789964 T
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27638052 1 -  46401353 T
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9984252 1 +  24341844 T
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1056607 1 -   2788317 T
i dasNov3.JH567436             C 0 C 0
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221216               4371567 0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH734498               1122726 317 +   1323196 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929605                579960 0 +   1015623 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736 1 +    779542 I
e pelSin1.JH207189               1424965 0 +   1874153 I
e melUnd1.JH556573                751858 2 +  10614383 I
e taeGut2.chr8_EQ832819_random   1557067 0 -   3401156 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=80812.000000
s hg38.chr8_KI270814v1_alt         95936 20 +    141812 AAAGTAACACACATGTACTT
s ponAbe2.chr8                  59065373 20 + 153482349 AAAGTAACACACATGTACTT
i ponAbe2.chr8                 C 0 C 0
s otoGar3.GL873541              21203340 20 -  23169006 AAAGTAACCCACATATACTT
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19225098 20 -  22931326 GCAGTCATGCACGTGGACGG
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2819100 20 -   6207710 GCAGTCATGCACGTGGACTG
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10855473 20 +  17242564 ACAGTCATGCACGTGGACTC
i orcOrc1.KB316907             C 0 C 0
s equCab2.chr15                 84049789 20 +  91571448 AAGGTGATGCACATGGACTT
i equCab2.chr15                C 0 N 0
s cerSim1.JH767782               6830556 20 -  14545593 AAGGTGATGCACATGGACTT
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134121469 20 + 140925898 AAAGGAACGCACACAGTCTT
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57853897 20 -  64289059 AAAGGAAGGCCCACAGACTC
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13625999 20 -  19722643 AAAGGGAGGCACCCAGACTC
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3048709 20 +   4816872 AAAGGAAAGAGCCCAGACTC
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19423780 20 -  23789964 GAAGCCGTGCACCTGGCCCT
i pteAle1.KB030580             C 0 I 3
s loxAfr3.scaffold_20           27638053 20 -  46401353 AAAGTGATGCACATGTACTT
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9984253 20 +  24341844 CAAGTGATGCACATGTACTT
i triMan1.JH594629             C 0 C 0
s dasNov3.JH567436               1056608 19 -   2788317 AAAGCAAT-TACATGTATTT
i dasNov3.JH567436             C 0 C 0
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221216               4371567  0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH734498               1122726 317 +   1323196 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e taeGut2.chr8_EQ832819_random   1557067  0 -   3401156 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=33226.000000
s hg38.chr8_KI270814v1_alt         95956 6 +    141812 TAAGCT
s ponAbe2.chr8                  59065393 6 + 153482349 TAAGCT
i ponAbe2.chr8                 C 0 C 0
s otoGar3.GL873541              21203360 6 -  23169006 AACATT
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19225118 6 -  22931326 AAAGCT
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2819120 6 -   6207710 AAAGCT
i camFer1.KB017763             C 0 C 0
s orcOrc1.KB316907              10855493 6 +  17242564 AGAGTT
i orcOrc1.KB316907             C 0 C 0
s cerSim1.JH767782               6830576 6 -  14545593 AAAGCT
i cerSim1.JH767782             C 0 C 0
s felCat8.chrA3                134121489 5 + 140925898 -GAGCT
i felCat8.chrA3                C 0 C 0
s canFam3.chr17                 57853917 6 -  64289059 AAAGCT
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13626019 6 -  19722643 AAAGCC
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3048729 6 +   4816872 AAAGCT
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19423803 6 -  23789964 GAAGTT
i pteAle1.KB030580             I 3 C 0
s loxAfr3.scaffold_20           27638073 6 -  46401353 AAAGCT
i loxAfr3.scaffold_20          C 0 C 0
s triMan1.JH594629               9984273 6 +  24341844 AAAGCT
i triMan1.JH594629             C 0 N 0
s dasNov3.JH567436               1056627 6 -   2788317 GACGCT
i dasNov3.JH567436             C 0 C 0
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221216               4371567 0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH734498               1122726 317 +   1323196 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929605                579960 0 +   1015623 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736 1 +    779542 I
e pelSin1.JH207189               1424965 0 +   1874153 I
e melUnd1.JH556573                751858 2 +  10614383 I
e taeGut2.chr8_EQ832819_random   1557067 0 -   3401156 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=8281.000000
s hg38.chr8_KI270814v1_alt         95962 1 +    141812 A
s ponAbe2.chr8                  59065399 1 + 153482349 A
i ponAbe2.chr8                 C 0 C 0
s otoGar3.GL873541              21203366 1 -  23169006 A
i otoGar3.GL873541             C 0 C 0
s vicPac2.KB632437              19225124 1 -  22931326 A
i vicPac2.KB632437             C 0 C 0
s camFer1.KB017763               2819126 1 -   6207710 A
i camFer1.KB017763             C 0 N 0
s orcOrc1.KB316907              10855499 1 +  17242564 A
i orcOrc1.KB316907             C 0 C 0
s cerSim1.JH767782               6830582 1 -  14545593 A
i cerSim1.JH767782             C 0 N 0
s felCat8.chrA3                134121494 1 + 140925898 A
i felCat8.chrA3                C 0 N 0
s canFam3.chr17                 57853923 1 -  64289059 A
i canFam3.chr17                C 0 C 0
s musFur1.GL896914              13626025 1 -  19722643 A
i musFur1.GL896914             C 0 C 0
s odoRosDiv1.KB229025            3048735 1 +   4816872 A
i odoRosDiv1.KB229025          C 0 C 0
s pteAle1.KB030580              19423809 1 -  23789964 A
i pteAle1.KB030580             C 0 C 0
s loxAfr3.scaffold_20           27638079 1 -  46401353 A
i loxAfr3.scaffold_20          C 0 N 0
s dasNov3.JH567436               1056633 1 -   2788317 A
i dasNov3.JH567436             C 0 C 0
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221216               4371567 0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH734498               1122726 317 +   1323196 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929605                579960 0 +   1015623 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736 1 +    779542 I
e pelSin1.JH207189               1424965 0 +   1874153 I
e melUnd1.JH556573                751858 2 +  10614383 I
e taeGut2.chr8_EQ832819_random   1557067 0 -   3401156 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=4500.000000
s hg38.chr8_KI270814v1_alt         95963 1 +    141812 C
s ponAbe2.chr8                  59065400 1 + 153482349 C
i ponAbe2.chr8                 C 0 C 0
s otoGar3.GL873541              21203367 1 -  23169006 C
i otoGar3.GL873541             C 0 N 0
s vicPac2.KB632437              19225125 1 -  22931326 C
i vicPac2.KB632437             C 0 C 0
s orcOrc1.KB316907              10855500 1 +  17242564 C
i orcOrc1.KB316907             C 0 N 0
s canFam3.chr17                 57853924 1 -  64289059 C
i canFam3.chr17                C 0 N 0
s musFur1.GL896914              13626026 1 -  19722643 C
i musFur1.GL896914             C 0 N 0
s odoRosDiv1.KB229025            3048736 1 +   4816872 C
i odoRosDiv1.KB229025          C 0 N 0
s pteAle1.KB030580              19423810 1 -  23789964 C
i pteAle1.KB030580             C 0 C 0
s dasNov3.JH567436               1056634 1 -   2788317 C
i dasNov3.JH567436             C 0 N 0
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221216               4371567 0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH734498               1122726 317 +   1323196 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929605                579960 0 +   1015623 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736 1 +    779542 I
e pelSin1.JH207189               1424965 0 +   1874153 I
e melUnd1.JH556573                751858 2 +  10614383 I
e taeGut2.chr8_EQ832819_random   1557067 0 -   3401156 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=161.000000
s hg38.chr8_KI270814v1_alt         95964 3 +    141812 ATG
s ponAbe2.chr8                  59065401 3 + 153482349 ATG
i ponAbe2.chr8                 C 0 C 0
s vicPac2.KB632437              19225126 3 -  22931326 TTG
i vicPac2.KB632437             C 0 N 0
s pteAle1.KB030580              19423811 3 -  23789964 TTC
i pteAle1.KB030580             C 0 C 0
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221216               4371567 0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH734498               1122726 317 +   1323196 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929605                579960 0 +   1015623 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736 1 +    779542 I
e pelSin1.JH207189               1424965 0 +   1874153 I
e melUnd1.JH556573                751858 2 +  10614383 I
e taeGut2.chr8_EQ832819_random   1557067 0 -   3401156 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=2919.000000
s hg38.chr8_KI270814v1_alt         95967 16 +    141812 ----TGTGTTACTAACATGT
s ponAbe2.chr8                  59065404 16 + 153482349 ----TGTGTTACTAACATGT
i ponAbe2.chr8                 C 0 C 0
s pteAle1.KB030580              19423814 20 -  23789964 TCACGATGACACTAACATGT
i pteAle1.KB030580             C 0 N 0
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221216               4371567  0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH734498               1122726 317 +   1323196 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e taeGut2.chr8_EQ832819_random   1557067  0 -   3401156 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=91.000000
s hg38.chr8_KI270814v1_alt         95983 1 +    141812 A
s ponAbe2.chr8                  59065420 1 + 153482349 A
i ponAbe2.chr8                 C 0 C 0
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221216               4371567 0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e allMis1.JH734498               1122726 317 +   1323196 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929605                579960 0 +   1015623 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736 1 +    779542 I
e pelSin1.JH207189               1424965 0 +   1874153 I
e melUnd1.JH556573                751858 2 +  10614383 I
e taeGut2.chr8_EQ832819_random   1557067 0 -   3401156 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e macFas5.chr8                  58367217 6565 + 146850525 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=3753.000000
s hg38.chr8_KI270814v1_alt         95984 15 +    141812 TGTTACTTTAGTTTG
s ponAbe2.chr8                  59065421 15 + 153482349 TGTTACTTTAGTTTG
i ponAbe2.chr8                 C 0 C 0
s macFas5.chr8                  58360652 15 + 146850525 TGTTACTTTAGTTTC
i macFas5.chr8                 T 6565 C 0
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221216               4371567  0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e allMis1.JH734498               1122726 317 +   1323196 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e taeGut2.chr8_EQ832819_random   1557067  0 -   3401156 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=12004.000000
s hg38.chr8_KI270814v1_alt         95999 84 +    141812 AGCGCTCCCGAGAAGCAGGGACTCCATGGCAAGACTCCATGGTGGC-GCCAAGACAAGTGGTTGACTGG--CCGGCAGCACAA--GGCA
s ponAbe2.chr8                  59065436 84 + 153482349 AGCACTCCCGAGAAGCTGGGACTCCATGGCAAGACTCCATGGTGGC-GCCAAGTCAAGTGGTTGACTGG--GCTGCAGCACAA--GGCA
i ponAbe2.chr8                 C 0 C 0
s macFas5.chr8                  58360667 87 + 146850525 CGTGATCCCCAGGAGCACAGATCCCCTGACCAGGTGTCATGGTGGCTGCTAAGTCAGGTAGTTGGCTGG--GCTGTGGAACAATGGGCA
i macFas5.chr8                 C 0 C 0
s allMis1.JH734498               1123043 84 +   1323196 AGTGCCCAAGGGCCCCGAGGGCAGCACCGCAGGAGCCCGGGGTCCC-GCCACCAGCAGCGAGAGGCTGGCAGCCGCAGCACGG--GA--
i allMis1.JH734498             I 317 C 0
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221216               4371567  0 -   9690256 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e taeGut2.chr8_EQ832819_random   1557067  0 -   3401156 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=6589.000000
s hg38.chr8_KI270814v1_alt         96083 68 +    141812 GAGACCACAGCTCAGACCTATCCCCATT-------GGCTGCAGATTACCCAGTGCCAGGGACCCACTCCAGACAT
s ponAbe2.chr8                  59065520 68 + 153482349 GAGACCACAGCTCAGACCTATCCCCATT-------GGCTGCAGATTACCCAGTGCCAGGGACCCACTCCAGACAT
i ponAbe2.chr8                 C 0 C 0
s macFas5.chr8                  58360754 67 + 146850525 -AAACCACAGCTCAGCTCTATCGTCTTT-------GGCTTCAGATTATCCGGCAACAGGGCCGCTCTCCAGATGA
i macFas5.chr8                 C 0 C 0
s pseHum1.KB221294                558686 59 -   1479532 gagcccgcagccccgaggtgtctctgcc-------gccccgagcctgcccc-------gagccccctccccat--
i pseHum1.KB221294             n 0 C 0
s allMis1.JH734498               1123127 50 +   1323196 -AGAC--TAGTCCTGGGG-----CTGCCGAACAGAGACCCCAGCCTACCAC-------GAACCCA----------
i allMis1.JH734498             C 0 C 0
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e taeGut2.chr8_EQ832819_random   1557067  0 -   3401156 I
e rheMac3.chr8                  61693383 6467 + 150158102 T
e chlSab2.chr8                  53287758 6649 + 139301422 T
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=30743.000000
s hg38.chr8_KI270814v1_alt         96151 45 +    141812 AGGTCAAGG------------------ACGAGTAGACCC-----TGAGGCCTGGC-AGCAGGCACACTT
s ponAbe2.chr8                  59065588 45 + 153482349 AGGTCAAGG------------------ACGAGCAGACCC-----TGAGGCCTGGC-AGCAGGCACACTT
i ponAbe2.chr8                 C 0 C 0
s rheMac3.chr8                  61686916 45 + 150158102 AGGTCAAGG------------------AGGAGTGGACCC-----TGAGGCCTGGC-AGCAGGCACACTT
i rheMac3.chr8                 T 6467 I 425
s macFas5.chr8                  58360821 45 + 146850525 AGGTCAAGG------------------AGGAGTGGACCC-----TGAGGCCTGGC-AGCAGGCACACTT
i macFas5.chr8                 C 0 I 9
s chlSab2.chr8                  53281109 45 + 139301422 AGGTCAAGG------------------AGGAGTGGACCC-----TGAGGCCTGGC-AGCAGGCACACTT
i chlSab2.chr8                 T 6649 C 0
s pseHum1.KB221294                558745 62 -   1479532 -cctcggggcccccgggcagcgcccacacccgCGGCCTC-----GGGGCGCCGGC-TGCGGGTCCCggg
i pseHum1.KB221294             C 0 C 0
s allMis1.JH734498               1123177 56 +   1323196 -GCTCAGAGCTGCTG------------CCCCGTGGGCTCCTGCAGGGCAGCTGGAGGGCGGGTGCTGTG
i allMis1.JH734498             C 0 C 0
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e taeGut2.chr8_EQ832819_random   1557067  0 -   3401156 I
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=375.000000
s hg38.chr8_KI270814v1_alt         96196 1 +    141812 G
s ponAbe2.chr8                  59065633 1 + 153482349 G
i ponAbe2.chr8                 C 0 C 0
s macFas5.chr8                  58360875 1 + 146850525 G
i macFas5.chr8                 I 9 C 0
s chlSab2.chr8                  53281154 1 + 139301422 G
i chlSab2.chr8                 C 0 I 386
s pseHum1.KB221294                558807 1 -   1479532 g
i pseHum1.KB221294             C 0 C 0
s allMis1.JH734498               1123233 1 +   1323196 C
i allMis1.JH734498             C 0 C 0
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.AOOT01113665               306 0 +       323 I
e fr3.HE591725                    289786 0 -    411779 I
e ficAlb2.chr2                 148476508 0 + 157563209 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214 0 -  25666195 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL109592                105897 0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802 0 +   2102797 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929605                579960 0 +   1015623 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736 1 +    779542 I
e pelSin1.JH207189               1424965 0 +   1874153 I
e melUnd1.JH556573                751858 2 +  10614383 I
e taeGut2.chr8_EQ832819_random   1557067 0 -   3401156 I
e rheMac3.chr8                  61686961 425 + 150158102 I
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-1085.000000
s hg38.chr8_KI270814v1_alt         96197 17 +    141812 AGGC---TCAAGGGAAGCCC--
s ponAbe2.chr8                  59065634 17 + 153482349 AGGC---TCAAGGGAAGCCC--
i ponAbe2.chr8                 C 0 C 0
s macFas5.chr8                  58360876 20 + 146850525 AGGCCTTCTGAGGGAAGCCC--
i macFas5.chr8                 C 0 I 28
s pseHum1.KB221294                558808 11 -   1479532 -----------gggCTGCGCGC
i pseHum1.KB221294             C 0 C 0
s allMis1.JH734498               1123234 11 +   1323196 -----------GGTGTGCCCCG
i allMis1.JH734498             C 0 C 0
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e taeGut2.chr8_EQ832819_random   1557067  0 -   3401156 I
e rheMac3.chr8                  61686961 425 + 150158102 I
e chlSab2.chr8                  53281155 386 + 139301422 I
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=2837.000000
s hg38.chr8_KI270814v1_alt         96214 249 +    141812 TGCCATCCCGCACCAGTGCCTGAGCTACAACTGCCACCTACACCTTGCTCA--------TGGGC----AGTGGTGGCCAGA-CCAT-------CCCAAATGCCTCTCTTCCCGTCGGGGCTCCAGCT--GTGCAGACT--TCTGGGCCAGACGCAGCTGCACAGTCTAAGTCATCCCTGCAGCTG---CAGGAGGGCAGGAAACTGTTGCTTATTACCATCCCAGCT---G------------CTTCACC-------GCTCACAGTGCCT-------------------------------GAGACCCAGGGCTC-------TGGCGCAGGGGCCA
s ponAbe2.chr8                  59065651 249 + 153482349 TGCCATCCCGCACCAGTGCCTGAGCTACAACTGCCACCTACACCTTGCTCA--------TGGAC----AGTGGTGGCCAGA-CCAT-------CCCAAATGCCTTTCTTTCTGTTGGGGCTCCAGCA--GTGCAGACT--CCTGGGCCAGATGCAGCTGCACAGTCTAAGTCATCCCTGCAGCTG---CAGGAGGGCAGGAACCAGTTGCTTATTACCATCCCAGCT---G------------CTTCACC-------GCTCACAGTGCCT-------------------------------GAGACCCAGGGCTC-------TGGCGCTGGGGCCA
i ponAbe2.chr8                 C 0 C 0
s pseHum1.KB221294                558819 246 -   1479532 TGCCCTCCC---------CCGGCTTTGTTCGCGCTCCTG------TGACCG--------GGGAC-----Aaagcggccggg-ccggggcctGCCCCGCGGAcc--cccccccATTCGGGATcccgctgcgggcgggtg--cccggggc--------aggcaccgggcgcggcccc---gcggctccccccggcccgccgg---c------------ccctcccggccccggggcagcgcttacctgcgccgggaggggcgtgcggggcgcggggggc------------------------gcggagcggggccc-------cggcggcggcggga
i pseHum1.KB221294             C 0 C 0
s allMis1.JH734498               1123245 295 +   1323196 TGGCAGCCC---------CTGGAGCTGCACCTGCCCACGGC----TGACTGCAGAGCATGGGGCTCATGGGGGCAGCTGGGTCCATGGGGAGCACCAAGCACC--GCATGGCTTT--GCTTCCAGCCTGGTGCAGGGGACCCTAGGACACCCCGTGAGGAAGGGGCTGCGACCCCTGGGCAGCTGTGACAGGACAGCAGGGCAC------------CGCGCCCAGCTCAGG------------CAGGGCCCGGCCGGGAGTGCGGTGCCCCGAGGGCTGTGCCTTGGCCCCTGGGACACAGGCAGACCCAAGTCCTTCTCTGCTGCCCTGGCCCAG
i allMis1.JH734498             C 0 C 0
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385   0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382   0 -   6649201 I
e hapBur1.JH425491                252157   0 -   1273513 I
e neoBri1.JH422308               3491820   0 -   5414369 I
e araMac1.AOUJ01470298               637   0 -       895 I
e takFla1.AOOT01113665               306   0 +       323 I
e fr3.HE591725                    289786   0 -    411779 I
e ficAlb2.chr2                 148476508   0 + 157563209 I
e anoCar2.chr1                 148577473   4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214   0 -  25666195 I
e falPer1.KB390952               2753956   0 -  18327016 I
e falChe1.KB397350               1707310   0 -   3649919 I
e macEug2.GL109592                105897   0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802   0 +   2102797 I
e melGal1.chr7                  34310641   0 -  38723565 I
e anaPla1.KB742696               1254472   0 -   1270250 I
e amaVit1.AOCU01222764              1324   0 -      1397 I
e apaSpi1.KB929605                579960   0 +   1015623 I
e cheMyd1.KB605988                134509   0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736   1 +    779542 I
e pelSin1.JH207189               1424965   0 +   1874153 I
e melUnd1.JH556573                751858   2 +  10614383 I
e taeGut2.chr8_EQ832819_random   1557067   0 -   3401156 I
e rheMac3.chr8                  61686961 425 + 150158102 I
e macFas5.chr8                  58360896  28 + 146850525 I
e chlSab2.chr8                  53281155 386 + 139301422 I
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=5472.000000
s hg38.chr8_KI270814v1_alt         96463 53 +    141812 -AGGGAGATCAG--------GCCCTAGGGTGGGAGACCAGGGCACTCAGCGACCCTCAGACC
s ponAbe2.chr8                  59065900 53 + 153482349 -AGGGAGATCAG--------GCCCTAGGGTGGGAGGCCAGTGCACTCAGCGACCCTCAGACC
i ponAbe2.chr8                 C 0 C 0
s macFas5.chr8                  58360924 53 + 146850525 -AGGAACAACAG--------AGCCTAGAATGGGAGACTGGTGTCCTCGGCGACCCTAAGGCT
i macFas5.chr8                 I 28 C 0
s pseHum1.KB221294                559065 56 -   1479532 gggggggctcag----gtccggcggcgggTAATGGCTCCC--GCCTCGGCGGAACTCGCCTT
i pseHum1.KB221294             C 0 I 6
s allMis1.JH734498               1123540 62 +   1323196 GGGAAGCCTCAGCCACCCCTGCCAGGGGGTGCAGGTCCCAGGGCCACGGCAGAGCCAGCTTG
i allMis1.JH734498             C 0 I 12
e ornAna1.Ultra67               12147818 7715 -  12745677 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.AOOT01113665               306  0 +       323 I
e fr3.HE591725                    289786  0 -    411779 I
e ficAlb2.chr2                 148476508  0 + 157563209 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375528               5867214  0 -  25666195 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL109592                105897  0 -    117391 I
e galGal4.chr1                  24067632 542 + 195276750 T
e geoFor1.JH740018               1736802  0 +   2102797 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929605                579960  0 +   1015623 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH207189               1424965  0 +   1874153 I
e melUnd1.JH556573                751858  2 +  10614383 I
e taeGut2.chr8_EQ832819_random   1557067  0 -   3401156 I
e rheMac3.chr8                  61686961 425 + 150158102 I
e chlSab2.chr8                  53281155 386 + 139301422 I
e panTro4.chr8                  55025844 24898 + 143986469 T

a score=-37853.000000
s hg38.chr8_KI270814v1_alt     96516 216 +    141812 CTCTGG-------------Gacctgccctgccagcctccaccttgggcttagctgcag---------ctgccacctg---------------ctgcacatggcgcctgcacatggc--gcctgcagctgc-acatggcgcctgGCAGCAGCGGGGGCAACAC----------------------TCAACACTG--CCAGGGCCACCAG--------CAGCGAGTACCCCA------GGGCCAGACGTCGCCACAGCGACTAATTT--------AGACTTTTGGCCCCACAGCTA-AAGAA-GGG
s ponAbe2.chr8              59065953 216 + 153482349 CTCTGG-------------GACCCGCCCTGCCAGCCTCCAGCTTGGGCTCAGCTGCAG---------CTGCCACCTG---------------CTGCACATGGCATCTGTACATGGC--ACCTGCAGCTGC-ACATGGCGCCTGGCAGCAGCAGGGACAACAC----------------------CCAACCCTG--CCAGGGCCACCAG--------CAGCAGGGACCTCA------GGGCCAGACATCGCCACAGTGACTAATTT--------AGACTTTCCGCCCCACAGCTA-AAGAA-GGG
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8              58360977 182 + 146850525 GTCTGG-------------GACCAGCCCTCCAAACCTCCACCATGGACTCTGCTGCAG---------CTGCCACCTG---------------C-----------------------------------AC-ATGTGGCGC--GGTAGCAGGGGTGGCAACCC----------------------CCGACCCTG--TCCGCGCCACCAG--------CAGTGAAAAATACA------AGGCCAGAGGCTACCAGGGCTTCTAATTC--------AGGCAGTTGGCAGGACAGATGCAAGAA-GGG
i macFas5.chr8             C 0 I 21
s taeGut2.chr18              2064703 212 -  11201131 CTCCAG-------------AGTCTCTCCTTTCTTCCTGCAGCCTGGCCCCCGTGTCAGGAC-TCAACCTGCCTCTCACTG------------CCACACTGCTCAGCCTCTCTGGCC--AGGCAGGGCAGC-----------------CAGGAGAGAGGTAGC----------------------TCAGCATGGCACAGGGACCACCTGA----ACCCCAGACAATCCTCC------AGGCTGGGCAGTGCTCCAGCATGGCCCCC-----------CTGTCCTTCCCAAGGGAA-TGAAAT---
i taeGut2.chr18            I 602 C 0
s pseHum1.KB221294            559127 233 -   1479532 CTCCGAGCGCCGGC---GCGGGCCCTGCGCGACACCGCCCGCGGGcccccccTGGCGGCA-------CCGCCGCGAACCGGCGGGGGCGGCACCGCGCACCGCAACTTCCCAAagc--gggagggacagcgggaggga------cagcgggagggacagcCC----------------------TCCCCACCGGGACGGGACAACCCA-------CCGGGACAGCCCTCCCCACCGGGACGGGACAACCCACCGGGACAGCCCTC-------------------CCCACCGGGA-CGGGA----
i pseHum1.KB221294         I 6 C 0
s allMis1.JH734498           1123614 279 +   1323196 CCCTGGACGTCCACCCTACGGGCCTTGTTTTGCCTCTGCTGC----TCCCCTGGGTAGGACGTGACCCTGCCCCAGG---------------CCACG-AGCCCAGCTCCGCAGAGCCAGGGCTGAGCAGCAGGAAGGAGGGAGGCAGCGGGCGGGGGTGGGCACGGAGGTTTATTAGCCATGTGGCGCTGCTGGGAAAGGACACCCGGGAAGCATCCGATAAAACAAACTCCTTGAAAACCAGAAGTCGGCCTGATGGGGCTTTTTTCCCTGTTTTTTTTTTTTTGCATTTCTT-TAGAA----
i allMis1.JH734498         I 12 C 0
e ornAna1.Ultra67           12147818 7715 -  12745677 I
e tetNig2.chr10              6379385   0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382   0 -   6649201 I
e hapBur1.JH425491            252157   0 -   1273513 I
e neoBri1.JH422308           3491820   0 -   5414369 I
e araMac1.AOUJ01470298           637   0 -       895 I
e takFla1.AOOT01113665           306   0 +       323 I
e fr3.HE591725                289786   0 -    411779 I
e ficAlb2.chr2             148476508   0 + 157563209 I
e anoCar2.chr1             148577473   4 + 263920458 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214   0 -  25666195 I
e falPer1.KB390952           2753956   0 -  18327016 I
e falChe1.KB397350           1707310   0 -   3649919 I
e macEug2.GL109592            105897   0 -    117391 I
e galGal4.chr1              24067632 542 + 195276750 T
e geoFor1.JH740018           1736802   0 +   2102797 I
e melGal1.chr7              34310641   0 -  38723565 I
e anaPla1.KB742696           1254472   0 -   1270250 I
e amaVit1.AOCU01222764          1324   0 -      1397 I
e apaSpi1.KB929605            579960   0 +   1015623 I
e cheMyd1.KB605988            134509   0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736   1 +    779542 I
e pelSin1.JH207189           1424965   0 +   1874153 I
e melUnd1.JH556573            751858   2 +  10614383 I
e rheMac3.chr8              61686961 425 + 150158102 I
e chlSab2.chr8              53281155 386 + 139301422 I
e panTro4.chr8              55025844 24898 + 143986469 T

a score=-7741.000000
s hg38.chr8_KI270814v1_alt     96732 22 +    141812 CAGGTACC-------AGATGCTCAGCCTC-------
s ponAbe2.chr8              59066169 22 + 153482349 CAGGTACC-------AGATGCTCAGCCTC-------
i ponAbe2.chr8             C 0 C 0
s taeGut2.chr18              2064915 16 -  11201131 --GTAACC-------A------CAGCCCTT-----T
i taeGut2.chr18            C 0 C 0
s pseHum1.KB221294            559360 27 -   1479532 ---CAACCCACCGGGA------CATCCTACCGGGAT
i pseHum1.KB221294         C 0 C 0
s allMis1.JH734498           1123893 19 +   1323196 ----AACC-------A------GGGGCCGCGGGGTG
i allMis1.JH734498         C 0 C 0
e ornAna1.Ultra67           12147818 7715 -  12745677 I
e tetNig2.chr10              6379385  0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382  0 -   6649201 I
e hapBur1.JH425491            252157  0 -   1273513 I
e neoBri1.JH422308           3491820  0 -   5414369 I
e araMac1.AOUJ01470298           637  0 -       895 I
e takFla1.AOOT01113665           306  0 +       323 I
e fr3.HE591725                289786  0 -    411779 I
e ficAlb2.chr2             148476508  0 + 157563209 I
e anoCar2.chr1             148577473  4 + 263920458 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214  0 -  25666195 I
e falPer1.KB390952           2753956  0 -  18327016 I
e falChe1.KB397350           1707310  0 -   3649919 I
e macEug2.GL109592            105897  0 -    117391 I
e galGal4.chr1              24067632 542 + 195276750 T
e geoFor1.JH740018           1736802  0 +   2102797 I
e melGal1.chr7              34310641  0 -  38723565 I
e anaPla1.KB742696           1254472  0 -   1270250 I
e amaVit1.AOCU01222764          1324  0 -      1397 I
e apaSpi1.KB929605            579960  0 +   1015623 I
e cheMyd1.KB605988            134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736  1 +    779542 I
e pelSin1.JH207189           1424965  0 +   1874153 I
e melUnd1.JH556573            751858  2 +  10614383 I
e rheMac3.chr8              61686961 425 + 150158102 I
e macFas5.chr8              58361159 21 + 146850525 I
e chlSab2.chr8              53281155 386 + 139301422 I
e panTro4.chr8              55025844 24898 + 143986469 T

a score=-25100.000000
s hg38.chr8_KI270814v1_alt     96754 111 +    141812 ATCCTG--GCGGCTGC----ACAATGCCCAGCTCTGAGGACCCTGCACTCTGGGCACCGGCTAAGA----AAGAACA------GACCCTAGGGTGGGAGGGCAAAGCA-----------------CTCAGTGATCC---------TCTGGACA------------------
s ponAbe2.chr8              59066191 111 + 153482349 ATCCTG--GCGGCTGC----ACAATGCCCAGCTCTGAGGACCCTGCCCTCTGGGCACTGGCTAAGA----AAGAGCA------GACCCTAGGGTGGGAGGGCGAAGCA-----------------CTCAACGATCC---------TCTGGACA------------------
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8              58361180 111 + 146850525 AACCTG--GCGGCCAC----ACAGTTCCCAGCGTTCGCGACCCGGGGCTCAGGGTGTGGGACAAAG----AGGAGCG------GACCCTAGGGAGGGAGGGCGGTGCT-----------------CTCGGCGATCC---------TCAGGCTC------------------
i macFas5.chr8             I 21 C 0
s taeGut2.chr18              2064931  96 -  11201131 ATCCTGATGCAGCTGG----ACA-GGAGCA-------------CCCACTTCTCTTGCCAGCACAGC-----------------CCCTCTGTGGCTCATGAGCCCCATG-----------------CTC-----TGC---------TCAGGTTGCTCCA---------GGCC
i taeGut2.chr18            C 0 C 0
s pseHum1.KB221294            559387 138 -   1479532 ATCCTACCGGAACGGG----ACA--GCCCA-------------CCGGCACATCTCACTGGAACATCCCACCAGAACGGGACATCCCACCGGGACGGGACAGCCCACCGGAACAGCCTAGCGGGACATC-----TCA---------CTGGGACATCCCACCAGAACGGGACA
i pseHum1.KB221294         C 0 C 0
s allMis1.JH734498           1123912 104 +   1323196 GGGCCG--GGAGCCGGGGCTACG-TGCGCAG----------GCTGCGCTGCGCCTGCTTCAGCAGG-----------------GTGTCGAAGTCGAGAGAGTCGAACT-----------------TGC-----TGCGGGTGGGAGCCGGGTC---------------GAAG
i allMis1.JH734498         C 0 C 0
e ornAna1.Ultra67           12147818 7715 -  12745677 I
e tetNig2.chr10              6379385   0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382   0 -   6649201 I
e hapBur1.JH425491            252157   0 -   1273513 I
e neoBri1.JH422308           3491820   0 -   5414369 I
e araMac1.AOUJ01470298           637   0 -       895 I
e takFla1.AOOT01113665           306   0 +       323 I
e fr3.HE591725                289786   0 -    411779 I
e ficAlb2.chr2             148476508   0 + 157563209 I
e anoCar2.chr1             148577473   4 + 263920458 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214   0 -  25666195 I
e falPer1.KB390952           2753956   0 -  18327016 I
e falChe1.KB397350           1707310   0 -   3649919 I
e macEug2.GL109592            105897   0 -    117391 I
e galGal4.chr1              24067632 542 + 195276750 T
e geoFor1.JH740018           1736802   0 +   2102797 I
e melGal1.chr7              34310641   0 -  38723565 I
e anaPla1.KB742696           1254472   0 -   1270250 I
e amaVit1.AOCU01222764          1324   0 -      1397 I
e apaSpi1.KB929605            579960   0 +   1015623 I
e cheMyd1.KB605988            134509   0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736   1 +    779542 I
e pelSin1.JH207189           1424965   0 +   1874153 I
e melUnd1.JH556573            751858   2 +  10614383 I
e rheMac3.chr8              61686961 425 + 150158102 I
e chlSab2.chr8              53281155 386 + 139301422 I
e panTro4.chr8              55025844 24898 + 143986469 T

a score=-6295.000000
s hg38.chr8_KI270814v1_alt     96865  60 +    141812 -----------------------------------TCTGGGACCAGCCCTGCCAGCA------TCCGAAGTGGG-TTCAG--CTGCAGCTGCCACCTGCATATG-------------------
s ponAbe2.chr8              59066302  60 + 153482349 -----------------------------------TCTGGGACCAGCCCTGCCAGCA------TCCGAAGTGGA-TTCAG--CTGCAGCTGCCACCTGCATATG-------------------
i ponAbe2.chr8             C 0 C 0
s rheMac3.chr8              61687386  60 + 150158102 -----------------------------------TCTGAGACCAGGCCTGCCAGCC------TCCGCCGTGGG-CTCAG--CTGCAGCTGCCACCTGCACATG-------------------
i rheMac3.chr8             I 425 I 323
s macFas5.chr8              58361291  60 + 146850525 -----------------------------------TCTGAGACCAGGCCTGCCAGCC------TCCGCCGTGGG-CTCAG--CTGCAGCTGCCACCTGCACATG-------------------
i macFas5.chr8             C 0 C 0
s taeGut2.chr18              2065027  60 -  11201131 TCCCCCTGTGTC--------------------CCCACT------------CCCTGCAGT----TGCTGAGTGGA-GGCAGAATTGTGG-------AAGGACACC-------------------
i taeGut2.chr18            C 0 C 0
s pseHum1.KB221294            559525 113 -   1479532 TCCCACCGGGACAGCCCACCGGGACGGGACAGCCCACCGGGACAGGACAGCCCTGCATTCCG-TCCCGAGGGGACGGCGG--CTGTCG-------CTGTACACTGCAGCTGTATCCCCGTGGG
i pseHum1.KB221294         C 0 C 0
s allMis1.JH734498           1124016  66 +   1323196 TCCTCCCGGTTC--------------------GAGTCTGGAAGCAGACGGTGCTGCCGTGAGCTGGCGGGGAGG-GGAAG-----------------GGCCACG-------------------
i allMis1.JH734498         C 0 C 0
e ornAna1.Ultra67           12147818 7715 -  12745677 I
e tetNig2.chr10              6379385   0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382   0 -   6649201 I
e hapBur1.JH425491            252157   0 -   1273513 I
e neoBri1.JH422308           3491820   0 -   5414369 I
e araMac1.AOUJ01470298           637   0 -       895 I
e takFla1.AOOT01113665           306   0 +       323 I
e fr3.HE591725                289786   0 -    411779 I
e ficAlb2.chr2             148476508   0 + 157563209 I
e anoCar2.chr1             148577473   4 + 263920458 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214   0 -  25666195 I
e falPer1.KB390952           2753956   0 -  18327016 I
e falChe1.KB397350           1707310   0 -   3649919 I
e macEug2.GL109592            105897   0 -    117391 I
e galGal4.chr1              24067632 542 + 195276750 T
e geoFor1.JH740018           1736802   0 +   2102797 I
e melGal1.chr7              34310641   0 -  38723565 I
e anaPla1.KB742696           1254472   0 -   1270250 I
e amaVit1.AOCU01222764          1324   0 -      1397 I
e apaSpi1.KB929605            579960   0 +   1015623 I
e cheMyd1.KB605988            134509   0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736   1 +    779542 I
e pelSin1.JH207189           1424965   0 +   1874153 I
e melUnd1.JH556573            751858   2 +  10614383 I
e chlSab2.chr8              53281155 386 + 139301422 I
e panTro4.chr8              55025844 24898 + 143986469 T

a score=-4997.000000
s hg38.chr8_KI270814v1_alt     96925 17 +    141812 ACGCACAGCAGT----AGCGA
s ponAbe2.chr8              59066362 17 + 153482349 ATGCACAGCAGT----AGCGA
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8              58361351 17 + 146850525 GCGTGCGGCAGC----ACAGA
i macFas5.chr8             C 0 C 0
s taeGut2.chr18              2065087 12 -  11201131 -CTCCCCTGGCT----A----
i taeGut2.chr18            C 0 C 0
s pseHum1.KB221294            559638 17 -   1479532 GCTCCCCGGGGTTATAA----
i pseHum1.KB221294         C 0 C 0
s allMis1.JH734498           1124082 12 +   1323196 -CTCTGGGGGGC----A----
i allMis1.JH734498         C 0 C 0
e ornAna1.Ultra67           12147818 7715 -  12745677 I
e tetNig2.chr10              6379385  0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382  0 -   6649201 I
e hapBur1.JH425491            252157  0 -   1273513 I
e neoBri1.JH422308           3491820  0 -   5414369 I
e araMac1.AOUJ01470298           637  0 -       895 I
e takFla1.AOOT01113665           306  0 +       323 I
e fr3.HE591725                289786  0 -    411779 I
e ficAlb2.chr2             148476508  0 + 157563209 I
e anoCar2.chr1             148577473  4 + 263920458 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214  0 -  25666195 I
e falPer1.KB390952           2753956  0 -  18327016 I
e falChe1.KB397350           1707310  0 -   3649919 I
e macEug2.GL109592            105897  0 -    117391 I
e galGal4.chr1              24067632 542 + 195276750 T
e geoFor1.JH740018           1736802  0 +   2102797 I
e melGal1.chr7              34310641  0 -  38723565 I
e anaPla1.KB742696           1254472  0 -   1270250 I
e amaVit1.AOCU01222764          1324  0 -      1397 I
e apaSpi1.KB929605            579960  0 +   1015623 I
e cheMyd1.KB605988            134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736  1 +    779542 I
e pelSin1.JH207189           1424965  0 +   1874153 I
e melUnd1.JH556573            751858  2 +  10614383 I
e rheMac3.chr8              61687446 323 + 150158102 I
e chlSab2.chr8              53281155 386 + 139301422 I
e panTro4.chr8              55025844 24898 + 143986469 T

a score=-937.000000
s hg38.chr8_KI270814v1_alt     96942 5 +    141812 TGGCT
s ponAbe2.chr8              59066379 5 + 153482349 TGACT
i ponAbe2.chr8             C 0 C 0
s taeGut2.chr18              2065099 5 -  11201131 TTGCT
i taeGut2.chr18            C 0 C 0
s pseHum1.KB221294            559655 5 -   1479532 TCCCA
i pseHum1.KB221294         C 0 C 0
s allMis1.JH734498           1124094 5 +   1323196 CAGGG
i allMis1.JH734498         C 0 I 10
e ornAna1.Ultra67           12147818 7715 -  12745677 I
e tetNig2.chr10              6379385 0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382 0 -   6649201 I
e hapBur1.JH425491            252157 0 -   1273513 I
e neoBri1.JH422308           3491820 0 -   5414369 I
e araMac1.AOUJ01470298           637 0 -       895 I
e takFla1.AOOT01113665           306 0 +       323 I
e fr3.HE591725                289786 0 -    411779 I
e ficAlb2.chr2             148476508 0 + 157563209 I
e anoCar2.chr1             148577473 4 + 263920458 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214 0 -  25666195 I
e falPer1.KB390952           2753956 0 -  18327016 I
e falChe1.KB397350           1707310 0 -   3649919 I
e macEug2.GL109592            105897 0 -    117391 I
e galGal4.chr1              24067632 542 + 195276750 T
e geoFor1.JH740018           1736802 0 +   2102797 I
e melGal1.chr7              34310641 0 -  38723565 I
e anaPla1.KB742696           1254472 0 -   1270250 I
e amaVit1.AOCU01222764          1324 0 -      1397 I
e apaSpi1.KB929605            579960 0 +   1015623 I
e cheMyd1.KB605988            134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736 1 +    779542 I
e pelSin1.JH207189           1424965 0 +   1874153 I
e melUnd1.JH556573            751858 2 +  10614383 I
e rheMac3.chr8              61687446 323 + 150158102 I
e macFas5.chr8              58361368 0 + 146850525 C
e chlSab2.chr8              53281155 386 + 139301422 I
e panTro4.chr8              55025844 24898 + 143986469 T

a score=-23437.000000
s hg38.chr8_KI270814v1_alt     96947 101 +    141812 AACCTGACCCTGCCCACCATCAC-AAGCAGCAGGAACC---CGAGGGCCAGACACCTCTGTGGCGCCTAA--G-TCAGGCT--------------------------------GTCGGCCCCACAACTGCA-----GGAGGGCGG
s ponAbe2.chr8              59066384 101 + 153482349 AACCTGACCCTGCCCACCGCCAC-AAGCAGCAGGAACC---CGAGGGCCAGACACCTGTGTGGCGCCTAA--G-TCAGGCT--------------------------------GTCGGCCCCACAACTGCA-----GGAGGGCGG
i ponAbe2.chr8             C 0 C 0
s taeGut2.chr18              2065104  87 -  11201131 ---------------------------AAGCTGGAGATGGGCATTTGGTGGACCAGGCAGAGGTGGCAGG--GCTGAGGCTCCTGG------------------------GGCTAAGGGCTCCTCTCCCCA-----TGAAGAAGG
i taeGut2.chr18            C 0 I 1
s pseHum1.KB221294            559660  83 -   1479532 ---------------------------CAGCTGTATCC---CACTC--CCGAGGATGCTGCGGGTGCCCC--CGTGGGGATCCCG----------------------------TTATGCCCCCCATCTCCACACCCTCGTGAAGG
i pseHum1.KB221294         C 0 I 1
s galGal4.chr27              2944565 102 +   5209285 AGCCTGACCATGCGAAACATCAC-CAACAGCAGGAGCC---CGCCTGCCAGGGCCACGAGCAAAGGAGGG--GCTGTGGCT--------------------------------TGCTGCTCCTGAGCTGGA-----AGCTGAAGA
i galGal4.chr27            n 542 I 1
s allMis1.JH734498           1124109 117 +   1323196 -------------GAACCCTCCTGCCCCGGGAGCAGCC----------ACGAGCCAGCAGAGGAACCCAGAAGTCCTGGCTCCCGGCCCTGTGCCCAGGCAGAGCAACGCTGCTGCTGCACCGGGAGCGTG-----GGGTGGGGG
i allMis1.JH734498         I 10 I 1
e ornAna1.Ultra67           12147818 7715 -  12745677 I
e tetNig2.chr10              6379385   0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382   0 -   6649201 I
e hapBur1.JH425491            252157   0 -   1273513 I
e neoBri1.JH422308           3491820   0 -   5414369 I
e araMac1.AOUJ01470298           637   0 -       895 I
e takFla1.AOOT01113665           306   0 +       323 I
e fr3.HE591725                289786   0 -    411779 I
e ficAlb2.chr2             148476508   0 + 157563209 I
e anoCar2.chr1             148577473   4 + 263920458 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214   0 -  25666195 I
e falPer1.KB390952           2753956   0 -  18327016 I
e falChe1.KB397350           1707310   0 -   3649919 I
e macEug2.GL109592            105897   0 -    117391 I
e geoFor1.JH740018           1736802   0 +   2102797 I
e melGal1.chr7              34310641   0 -  38723565 I
e anaPla1.KB742696           1254472   0 -   1270250 I
e amaVit1.AOCU01222764          1324   0 -      1397 I
e apaSpi1.KB929605            579960   0 +   1015623 I
e cheMyd1.KB605988            134509   0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736   1 +    779542 I
e pelSin1.JH207189           1424965   0 +   1874153 I
e melUnd1.JH556573            751858   2 +  10614383 I
e rheMac3.chr8              61687446 323 + 150158102 I
e macFas5.chr8              58361368   0 + 146850525 C
e chlSab2.chr8              53281155 386 + 139301422 I
e panTro4.chr8              55025844 24898 + 143986469 T

a score=-53421.000000
s hg38.chr8_KI270814v1_alt     97048  74 +    141812 GAACCGGCCACCAAGC-------CCCTTCCAGGTGGCT-------------------------GCAG-AGTGCCCAGCGCC-GGGGACACTGTGCTCTGGGCCTGGGC------------------------------
s ponAbe2.chr8              59066485  74 + 153482349 GAACCGGCCACCAAGC-------CCCTTCCAGGTGGCT-------------------------GCAC-AGTGCCCAGCGCT-GGTGACCTTGTGCTCTGGGCCTGGGC------------------------------
i ponAbe2.chr8             C 0 C 0
s ornAna1.Ultra67           12155533  63 -  12745677 GAACCAGCCAGTTGAA-------GTCGTCCACCTGGCT-------------------------CCAGTTGTTCCGGGTCCT-G------------TCGAGGCCCGACC------------------------------
i ornAna1.Ultra67          I 7715 C 0
s taeGut2.chr18              2065192  56 -  11201131 --------CAGCTGGG-----------------CCATG-------------------------GTGG-AGCCTGCCCTGCC-C------------CTGTGACCCCATGTCCCCCCA------------------CAGC
i taeGut2.chr18            I 1 C 0
s pseHum1.KB221294            559744 110 -   1479532 GAA---TCCCACGGGGGTCCCACCCCGTGCTCACCATGTAcccccgtgacggtgtgtccccgtgggg-agcccccagtgcctc------------ccgggtccctgcgtccccccA------------CTTCCCCAGC
i pseHum1.KB221294         I 1 I 89
s galGal4.chr27              2944668  70 +   5209285 GGA---GCTGGCTGAG-------CTCTGGCTCGAGCTG-------------------------GATG-AGATCTGGCTAGC-G------------AGGCAGCCCTGCTTTCCACGC------------------CAG-
i galGal4.chr27            I 1 I 25
s allMis1.JH734498           1124227 105 +   1323196 GCACGCACCAGCCGCA-------CACCTGGCTGCAGAG-AAGCAGGTGGGGG-----------GGTG-GGGGCAGATTGTG-G------------CCACATCCATGGTCTGCccagggacgagggggctgtgcccagg
i allMis1.JH734498         I 1 I 14
e tetNig2.chr10              6379385   0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382   0 -   6649201 I
e hapBur1.JH425491            252157   0 -   1273513 I
e neoBri1.JH422308           3491820   0 -   5414369 I
e araMac1.AOUJ01470298           637   0 -       895 I
e takFla1.AOOT01113665           306   0 +       323 I
e fr3.HE591725                289786   0 -    411779 I
e ficAlb2.chr2             148476508   0 + 157563209 I
e anoCar2.chr1             148577473   4 + 263920458 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214   0 -  25666195 I
e falPer1.KB390952           2753956   0 -  18327016 I
e falChe1.KB397350           1707310   0 -   3649919 I
e macEug2.GL109592            105897   0 -    117391 I
e geoFor1.JH740018           1736802   0 +   2102797 I
e melGal1.chr7              34310641   0 -  38723565 I
e anaPla1.KB742696           1254472   0 -   1270250 I
e amaVit1.AOCU01222764          1324   0 -      1397 I
e apaSpi1.KB929605            579960   0 +   1015623 I
e cheMyd1.KB605988            134509   0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736   1 +    779542 I
e pelSin1.JH207189           1424965   0 +   1874153 I
e melUnd1.JH556573            751858   2 +  10614383 I
e rheMac3.chr8              61687446 323 + 150158102 I
e macFas5.chr8              58361368   0 + 146850525 C
e chlSab2.chr8              53281155 386 + 139301422 I
e panTro4.chr8              55025844 24898 + 143986469 T

a score=-2873.000000
s hg38.chr8_KI270814v1_alt     97122 9 +    141812 CAAGG----AAGA
s ponAbe2.chr8              59066559 9 + 153482349 CAAGG----AAGA
i ponAbe2.chr8             C 0 C 0
s ornAna1.Ultra67           12155596 9 -  12745677 CCGCG----AAGT
i ornAna1.Ultra67          C 0 C 0
s taeGut2.chr18              2065248 9 -  11201131 CAGAGTGCA----
i taeGut2.chr18            C 0 I 8
s allMis1.JH734498           1124346 5 +   1323196 CGGGG--------
i allMis1.JH734498         I 14 I 23
e tetNig2.chr10              6379385 0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382 0 -   6649201 I
e hapBur1.JH425491            252157 0 -   1273513 I
e neoBri1.JH422308           3491820 0 -   5414369 I
e araMac1.AOUJ01470298           637 0 -       895 I
e takFla1.AOOT01113665           306 0 +       323 I
e fr3.HE591725                289786 0 -    411779 I
e ficAlb2.chr2             148476508 0 + 157563209 I
e anoCar2.chr1             148577473 4 + 263920458 I
e pseHum1.KB221294            559854 89 -   1479532 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214 0 -  25666195 I
e falPer1.KB390952           2753956 0 -  18327016 I
e falChe1.KB397350           1707310 0 -   3649919 I
e macEug2.GL109592            105897 0 -    117391 I
e galGal4.chr27              2944738 25 +   5209285 I
e geoFor1.JH740018           1736802 0 +   2102797 I
e melGal1.chr7              34310641 0 -  38723565 I
e anaPla1.KB742696           1254472 0 -   1270250 I
e amaVit1.AOCU01222764          1324 0 -      1397 I
e apaSpi1.KB929605            579960 0 +   1015623 I
e cheMyd1.KB605988            134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736 1 +    779542 I
e pelSin1.JH207189           1424965 0 +   1874153 I
e melUnd1.JH556573            751858 2 +  10614383 I
e rheMac3.chr8              61687446 323 + 150158102 I
e macFas5.chr8              58361368 0 + 146850525 C
e chlSab2.chr8              53281155 386 + 139301422 I
e panTro4.chr8              55025844 24898 + 143986469 T

a score=-80357.000000
s hg38.chr8_KI270814v1_alt     97131 124 +    141812 ----GCAGACCCTAGTGCGGGAAGGC---G-------CTGCACTCTGCGACC------TTCAAGTCATCTGTGCCC------------------ATCCCTGACAGCCTCCGCTGTGGCCTCAAC-TGTA---------------GCTA---A-----CACC---TGCACATGGCGCCCAAAATCAGCAG------
s ponAbe2.chr8              59066568 124 + 153482349 ----GCAGACCCTAGTGCGGGAAGGC---G-------CTGCACTCTACGACC------CTCAAGTCATCTGTGCCC------------------ATCCCTGACAGCCTCCGCTGTGGCCTCAAC-TGTA---------------GCTA---A-----CACC---TGCACATGGCGCCCAAAATCAGCAG------
i ponAbe2.chr8             C 0 C 0
s ornAna1.Ultra67           12155605 124 -  12745677 ----CGTCGTCCAGCCCCGGGTAGGTCCAG-------CTGTACGGGGCGAAC------TGGAGGCCG-CTGCAGTC------------------CTCGATGACGGCC-CGGCTGGTGAC----C-TGCA---------------GATAGATG-----CGCG---TGTCCCGGGTGGCGTGGGTCCGGAG------
i ornAna1.Ultra67          C 0 I 4
s taeGut2.chr18              2065265 125 -  11201131 CCACACAGGTCTGTGCATCAGCACTG---G-------CTGCCACGGGCATCC------CGGG------CAGTGCTGGCAG--------------CTGAAGGAAGG-------AGcagacagaga-gaca---------------gacagaca-----gaca---agcagacaAGGCCCTG---CAGGATACCCAG
i taeGut2.chr18            I 8 I 6
s pseHum1.KB221294            559943 161 -   1479532 CCACCCCTGACCATGTATCCACGCGG---GGATCCCTCTGTGgcctccatcc------ctggag-ct-ccGTGCCTGTGGGGAtgtctctgtccctgcctggtgGCCTC--CAGCTGGCCCTGACTGTA---------------GACAGAGG-----GTCA-TCCCCATACCCCACCCCGCCTCAGGGACCCCAG
i pseHum1.KB221294         I 89 I 4
s galGal4.chr27              2944763 154 +   5209285 CCGTCTGCTTCCACTGAGCAGAAGGG---GGC-----ACGTGGCGGGCAGCAGACACGCtggaa-ag-cactgctg------------------ctccgacacag-------cacctgcagagc-tgcaccacTGGGGGGACtgggaggagg-----gatggggctgAGAGAACCCCCCGTGCCAGCACACACCT
i galGal4.chr27            I 25 I 5
s allMis1.JH734498           1124374 111 +   1323196 CGGC------------GGCAGAACTG---G-------CGTCGCCCGCCAAAG------CAGAGGTCG-AAGGGCTG------------------CTCA--------------TCCGGGCGCCGT-AGCG---------------TGTGGCCGCGCTCGATG-GCAGCAAAGGCCTCCTCGGCGTAG------CGG
i allMis1.JH734498         I 23 I 4
e tetNig2.chr10              6379385   0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382   0 -   6649201 I
e hapBur1.JH425491            252157   0 -   1273513 I
e neoBri1.JH422308           3491820   0 -   5414369 I
e araMac1.AOUJ01470298           637   0 -       895 I
e takFla1.AOOT01113665           306   0 +       323 I
e fr3.HE591725                289786   0 -    411779 I
e ficAlb2.chr2             148476508   0 + 157563209 I
e anoCar2.chr1             148577473   4 + 263920458 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214   0 -  25666195 I
e falPer1.KB390952           2753956   0 -  18327016 I
e falChe1.KB397350           1707310   0 -   3649919 I
e macEug2.GL109592            105897   0 -    117391 I
e geoFor1.JH740018           1736802   0 +   2102797 I
e melGal1.chr7              34310641   0 -  38723565 I
e anaPla1.KB742696           1254472   0 -   1270250 I
e amaVit1.AOCU01222764          1324   0 -      1397 I
e apaSpi1.KB929605            579960   0 +   1015623 I
e cheMyd1.KB605988            134509   0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736   1 +    779542 I
e pelSin1.JH207189           1424965   0 +   1874153 I
e melUnd1.JH556573            751858   2 +  10614383 I
e rheMac3.chr8              61687446 323 + 150158102 I
e macFas5.chr8              58361368   0 + 146850525 C
e chlSab2.chr8              53281155 386 + 139301422 I
e panTro4.chr8              55025844 24898 + 143986469 T

a score=1520.000000
s hg38.chr8_KI270814v1_alt     97255 24 +    141812 TGGCAACCCTCAACCC--------TTTGTGCA
s ponAbe2.chr8              59066692 24 + 153482349 TGGCAACCCTCAACCC--------TGTGTGCA
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8              58361368 24 + 146850525 TGGCAATCCAATACCC--------TGCCCGCA
i macFas5.chr8             C 0 I 8
s ornAna1.Ultra67           12155733 32 -  12745677 TGGCAGGCCACGGCCAGGAGGCAGTCGGCGCA
i ornAna1.Ultra67          I 4 C 0
s pelSin1.JH224655            129146 24 -    257254 TGGCCACCCCAACCCCCTTGCCCA--------
i pelSin1.JH224655         n 0 C 0
e tetNig2.chr10              6379385  0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382  0 -   6649201 I
e hapBur1.JH425491            252157  0 -   1273513 I
e neoBri1.JH422308           3491820  0 -   5414369 I
e araMac1.AOUJ01470298           637  0 -       895 I
e takFla1.AOOT01113665           306  0 +       323 I
e fr3.HE591725                289786  0 -    411779 I
e ficAlb2.chr2             148476508  0 + 157563209 I
e anoCar2.chr1             148577473  4 + 263920458 I
e pseHum1.KB221294            560104  4 -   1479532 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214  0 -  25666195 I
e allMis1.JH734498           1124485  4 +   1323196 I
e falPer1.KB390952           2753956  0 -  18327016 I
e falChe1.KB397350           1707310  0 -   3649919 I
e macEug2.GL109592            105897  0 -    117391 I
e galGal4.chr27              2944917  5 +   5209285 I
e geoFor1.JH740018           1736802  0 +   2102797 I
e melGal1.chr7              34310641  0 -  38723565 I
e anaPla1.KB742696           1254472  0 -   1270250 I
e amaVit1.AOCU01222764          1324  0 -      1397 I
e apaSpi1.KB929605            579960  0 +   1015623 I
e cheMyd1.KB605988            134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736  1 +    779542 I
e melUnd1.JH556573            751858  2 +  10614383 I
e taeGut2.chr18              2065390  6 -  11201131 I
e rheMac3.chr8              61687446 323 + 150158102 I
e chlSab2.chr8              53281155 386 + 139301422 I
e panTro4.chr8              55025844 24898 + 143986469 T

a score=-225775.000000
s hg38.chr8_KI270814v1_alt     97279 257 +    141812 G---CCAGCAGGGAGGAC-----------CG----CAGGGCC---------AGAGGAGGCCGCTGAGCCTAAATCAGGCAGTCCGCCCAG--CA--GCTGCAGGA---AG--GA---GGTAACAGG----------CCTCTCAGCCCCATC-----------CAGGCGGCT--------------GCTGCACAGTGCCCAGCGCCCACTAC-CTAGC-TCTGTAAG---CG--------CAGGCC----AAGGCAG-----------AGTGGAC-------CCT----------------AGGGAGGAGGG---AGGGCAGTACGC-----------------------TCGGCGAC---------CCTTGGGTGCACTT--GACTGTACTCGGGGACAAGCCC---GGCCAGCCACTATGG
s ponAbe2.chr8              59066716 254 + 153482349 GCCACCAGCAGGGAGGAC-----------CA----CAGGGCC---------AGAGGAGGCCGCTGAGCCTAAATCAGGCAGTCCGCCCAG--CA--GCTGCAGGA---AG--GA---GGTAATACG----------CCTCTCAGCCCCATC-----------TAGGCG-----------------GCTGCACAGTGCCGAGCGCCCGCTAC-CTAGC-TCTGTGAG---CG--------CAGGCC----AAGGCAG-----------AGTGGAC-------CCT----------------AG---GGAGGG---AGGGCAGTACAC-----------------------GCGGCGAC---------CCTTGGGTGCACTT--GACTGTACTCGGGGACAAGCCT---GGCCAGCCGCTGTGG
i ponAbe2.chr8             C 0 C 0
s ornAna1.Ultra67           12155765 312 -  12745677 ---GTCCTCCAGGAACAC-----------CG-----AGGTGG---------AGACGGGCCCGCAGAGGACGGTGCA-GCGGCGGGCCCGGGCCA--GCCGCAGGG---TGTTGG---GGT----TG----------CCGCACAGCTTCACCGTGCAGTCGGTCAGGCCGCTGAGGAGGATGTCCCGCTGCAGCAGCTCGGACGCCCGCTTCTCCAGCACCCGGGAG---GA--------CTGGTCGCTGAAGCCGGCCGCGTCGTCCGGCGGCT-------CCTCCGCggccg-------gggccggggcg---ggggcgggggcg-----------------------gcggcggCCGGGACCGGCCCGGGGGTCGCCT----CCTTCCTGCGGGTCTTGAA----GGCGAAGCGCGGCGG
i ornAna1.Ultra67          C 0 C 0
s taeGut2.chr18              2065396 267 -  11201131 ---------TTGCAAAATTGTCTCCTGTTGG----CAGCTGCAGCTAACAGACACAGGCTCCCTGCACCCCAAAC-CCTTCCCTCCCCAGCACA--GGGGCTGCC---AG--GA---GGGGCTGAG---------GCTTTCCAGGCACCTC-----------CTGGCAAGGGGT-----------G--GCCGTG------------------------AGGGGTGG---CG--------TGGCCC----CGGCAGG-----------GTGGGGG-------CCA----------------GGGGGGCAGGA----GGGCGTCCCCGGGGCTCGGAGGTGGCTGGGACAAGCGGCAGC---------CCCTGGTGCTGCTG---------CATGAGTCCAAGATC---TGCAGGTTTTCTAGT
i taeGut2.chr18            I 6 C 0
s pseHum1.KB221294            560108 263 -   1479532 ---------GGGCACAGT----GCACACGGG----GGGCTGT---------GCAGGGGACCCCAGGATGTCA--------------CCaaggct--ggcacaggc---ag--gacagggTGCTCAG--------------CCAGGTCCTCA-----------CTGCCCGCAGGT-----------GCTGCCATGGCC--------ATACCC-GGAGT-GGGGATGG---CA--------CAGCTC----GGGGTGG---------CTGTGGGAG-------CCACGGTGTCCCCAAGATGGggagggaggatttggggtgacCCCACTGCTC-----------------TCAGCAAC---------CCCGGAGAGCTCTG---------CCCCGCTCACAGCACAAATGACAGTAGAATAAA
i pseHum1.KB221294         I 4 C 0
s galGal4.chr27              2944922 262 +   5209285 ---------cagcagggc---------tcag----cagctCTAAGTGA---GCCCGGGGGcgcagcaggcag---------------cagagcagcggTGTGCCC---AG--CACCAGGAGCTCGGTGTGGGGTAGGGCTCCAAccccccc-TACAGACA--CAGAGGGAAGAA-----------GCCGTTGTGCCC-------GGGATGC-AGCGC-CAGGACTG---CAGTTTTCTCAACCCC----CGTGCAG-----------GTGGGAT--------------------------GAAAGGGAGAG----------CCCCACGG-------------------------GAc---------ccctggggcagctg-ctggccCACATTCCTCACACCAC---CTCCAGTGGGAGAGA
i galGal4.chr27            I 5 C 0
s allMis1.JH734498           1124489 265 +   1323196 ---------TCACGAAGC-----------CG----TAGTTGTCGCTG----CCGGGGGATGAGAGGGCGTCA-----------TGCCCGAGCCC--TGACCGCCC---CG--TTCCCCGCTCTCGC-------CTCCTCCCCACGTGTGCC-TACAA-----CAGAGCCAAGCC-----------CCCGCCATTCGC----------------------------T---CA--------CCCCTC----GGAGCGG---------AAGTGGAGGGTGCACTCCTCGATGTCCCCG-----AACACGGAGAA------GCGGTGCCGCAGCTCCGAGC------------ACGTCATC---------CTGCCGGGGATCTTCCCAATGAAGACAACCCGCCTCTC---CTCCTGCGCGAGGGG
i allMis1.JH734498         I 4 C 0
s pelSin1.JH224655            129170 294 -    257254 -------GCCAGCAGAGA-----------GGAGCCCAGCTGT---------GCCGGGG----CGGGACGCTGAATGGAAGCCCAGCCAGGGGTT--GGCACAGCCTGGCG--GATGTTGATTTCGG-TCAGACCATTTCTCTCggtcctgc---cagccc--cagccccagggg-----------gccctgacagcttc--tgcaggccCT-CAGGC-AAGGATGGCTcca--------cacccc----cagaagg-----------ggcgggg-------cctcggtcagaagg-----ggcggggatag----gggcagcactgcccctc-----------------ccccagcc---------ctcagagccatgtg----gagcaggcAGAGCCAAGCtc---cggcggcgatttaaa
i pelSin1.JH224655         C 0 C 0
e tetNig2.chr10              6379385   0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382   0 -   6649201 I
e hapBur1.JH425491            252157   0 -   1273513 I
e neoBri1.JH422308           3491820   0 -   5414369 I
e araMac1.AOUJ01470298           637   0 -       895 I
e takFla1.AOOT01113665           306   0 +       323 I
e fr3.HE591725                289786   0 -    411779 I
e ficAlb2.chr2             148476508   0 + 157563209 I
e anoCar2.chr1             148577473   4 + 263920458 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214   0 -  25666195 I
e falPer1.KB390952           2753956   0 -  18327016 I
e falChe1.KB397350           1707310   0 -   3649919 I
e macEug2.GL109592            105897   0 -    117391 I
e geoFor1.JH740018           1736802   0 +   2102797 I
e melGal1.chr7              34310641   0 -  38723565 I
e anaPla1.KB742696           1254472   0 -   1270250 I
e amaVit1.AOCU01222764          1324   0 -      1397 I
e apaSpi1.KB929605            579960   0 +   1015623 I
e cheMyd1.KB605988            134509   0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736   1 +    779542 I
e melUnd1.JH556573            751858   2 +  10614383 I
e rheMac3.chr8              61687446 323 + 150158102 I
e macFas5.chr8              58361392   8 + 146850525 I
e chlSab2.chr8              53281155 386 + 139301422 I
e panTro4.chr8              55025844 24898 + 143986469 T

a score=-4287.000000
s hg38.chr8_KI270814v1_alt     97536 8 +    141812 TGG-GCTCA
s ponAbe2.chr8              59066970 8 + 153482349 TGG-GCTCA
i ponAbe2.chr8             C 0 C 0
s rheMac3.chr8              61687769 8 + 150158102 TGG-GCTCA
i rheMac3.chr8             I 323 C 0
s ornAna1.Ultra67           12156077 8 -  12745677 CGG-CTTCA
i ornAna1.Ultra67          C 0 C 0
s taeGut2.chr18              2065663 9 -  11201131 CCCGGCTCC
i taeGut2.chr18            C 0 C 0
s pseHum1.KB221294            560371 8 -   1479532 ACC-ACCCG
i pseHum1.KB221294         C 0 C 0
s galGal4.chr27              2945184 8 +   5209285 TGC-TTTCG
i galGal4.chr27            C 0 C 0
s allMis1.JH734498           1124754 5 +   1323196 ----ACACG
i allMis1.JH734498         C 0 C 0
s pelSin1.JH224655            129464 8 -    257254 ggg-cccac
i pelSin1.JH224655         C 0 C 0
e tetNig2.chr10              6379385 0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382 0 -   6649201 I
e hapBur1.JH425491            252157 0 -   1273513 I
e neoBri1.JH422308           3491820 0 -   5414369 I
e araMac1.AOUJ01470298           637 0 -       895 I
e takFla1.AOOT01113665           306 0 +       323 I
e fr3.HE591725                289786 0 -    411779 I
e ficAlb2.chr2             148476508 0 + 157563209 I
e anoCar2.chr1             148577473 4 + 263920458 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214 0 -  25666195 I
e falPer1.KB390952           2753956 0 -  18327016 I
e falChe1.KB397350           1707310 0 -   3649919 I
e macEug2.GL109592            105897 0 -    117391 I
e geoFor1.JH740018           1736802 0 +   2102797 I
e melGal1.chr7              34310641 0 -  38723565 I
e anaPla1.KB742696           1254472 0 -   1270250 I
e amaVit1.AOCU01222764          1324 0 -      1397 I
e apaSpi1.KB929605            579960 0 +   1015623 I
e cheMyd1.KB605988            134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736 1 +    779542 I
e melUnd1.JH556573            751858 2 +  10614383 I
e macFas5.chr8              58361392 8 + 146850525 I
e chlSab2.chr8              53281155 386 + 139301422 I
e panTro4.chr8              55025844 24898 + 143986469 T

a score=-24527.000000
s hg38.chr8_KI270814v1_alt     97544 24 +    141812 -GCTGCAGCTGCCACCT---------GCACATGG
s ponAbe2.chr8              59066978 24 + 153482349 -GCTGCAGCTACCACCT---------GCACATGG
i ponAbe2.chr8             C 0 C 0
s rheMac3.chr8              61687777 24 + 150158102 -GTTGCAGCTGCCACCT---------GCACATGG
i rheMac3.chr8             C 0 I 6
s chlSab2.chr8              53281541 24 + 139301422 -GCTGCAGCTGCCACCT---------GCACATGG
i chlSab2.chr8             I 386 C 0
s ornAna1.Ultra67           12156085 24 -  12745677 -GCTGTCGGCGCCGCTC---------GGCCAGGA
i ornAna1.Ultra67          C 0 C 0
s taeGut2.chr18              2065672 22 -  11201131 TGCTCTGGCTCC------TCACCCAGGC------
i taeGut2.chr18            C 0 C 0
s pseHum1.KB221294            560379 13 -   1479532 TGCTCCGCTTT---------------gc------
i pseHum1.KB221294         C 0 C 0
s galGal4.chr27              2945192 28 +   5209285 TGTGCTGGGAGCCACATGCCGTGCTAAC------
i galGal4.chr27            C 0 C 0
s allMis1.JH734498           1124759 28 +   1323196 ACACTCGGGGCCATCAGCTACTGCTAGC------
i allMis1.JH734498         C 0 C 0
s pelSin1.JH224655            129472 12 -    257254 agtTCCAGCT----------------GT------
i pelSin1.JH224655         C 0 C 0
e tetNig2.chr10              6379385  0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382  0 -   6649201 I
e hapBur1.JH425491            252157  0 -   1273513 I
e neoBri1.JH422308           3491820  0 -   5414369 I
e araMac1.AOUJ01470298           637  0 -       895 I
e takFla1.AOOT01113665           306  0 +       323 I
e fr3.HE591725                289786  0 -    411779 I
e ficAlb2.chr2             148476508  0 + 157563209 I
e anoCar2.chr1             148577473  4 + 263920458 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214  0 -  25666195 I
e falPer1.KB390952           2753956  0 -  18327016 I
e falChe1.KB397350           1707310  0 -   3649919 I
e macEug2.GL109592            105897  0 -    117391 I
e geoFor1.JH740018           1736802  0 +   2102797 I
e melGal1.chr7              34310641  0 -  38723565 I
e anaPla1.KB742696           1254472  0 -   1270250 I
e amaVit1.AOCU01222764          1324  0 -      1397 I
e apaSpi1.KB929605            579960  0 +   1015623 I
e cheMyd1.KB605988            134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736  1 +    779542 I
e melUnd1.JH556573            751858  2 +  10614383 I
e macFas5.chr8              58361392  8 + 146850525 I
e panTro4.chr8              55025844 24898 + 143986469 T

a score=-42928.000000
s hg38.chr8_KI270814v1_alt     97568 50 +    141812 TGCGCTCCAGCCG-CAGTGGCAACCCACGG--------CCCTGCC-----GGCGCCACCAGCAG-----
s ponAbe2.chr8              59067002 50 + 153482349 CGCTCTCCAGCCG-CAGTGGCAACCCACGG--------CCCTGCC-----GGCGCCACCAGCAG-----
i ponAbe2.chr8             C 0 C 0
s chlSab2.chr8              53281565 50 + 139301422 GGCGCGGTAGCAG-GGGTGGCAACCCCCGA--------CCCTGTC-----CGCGCCACCAGCAG-----
i chlSab2.chr8             C 0 I 167
s ornAna1.Ultra67           12156109 50 -  12745677 CCCCCTGCAGCCG-CTGCAGCGTCTCCTGG--------CCCTGCC-----GCAGGTCGTAGGGG-----
i ornAna1.Ultra67          C 0 I 1
s taeGut2.chr18              2065694 45 -  11201131 -----------TG-CCCTACAAACCACAGC--------TAGTGCC----ATGGGCATCTTGATGCTGAG
i taeGut2.chr18            C 0 C 0
s pseHum1.KB221294            560392 46 -   1479532 -----------tg--------aattccagc----tttttAATGCCTGTAACAATCCTCTGGGCACCAGG
i pseHum1.KB221294         C 0 C 0
s galGal4.chr27              2945220 40 +   5209285 -----------TT-CACTGCCCGCCCCAGA--------GCCTGTCTGCAAGAACCCACT---------G
i galGal4.chr27            C 0 C 0
s allMis1.JH734498           1124787 55 +   1323196 -----------TGCCCCTGCCCTTTCCAGGACAGGCTGAACGGCCCTCAAAGCCCCTCCATGCAC---C
i allMis1.JH734498         C 0 C 0
s pelSin1.JH224655            129484 41 -    257254 -----------TG-CTGCAGTAGCGGCAGC--------AGGAGCC-----GGGGCCCCCAAGTCC---C
i pelSin1.JH224655         C 0 C 0
e tetNig2.chr10              6379385  0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382  0 -   6649201 I
e hapBur1.JH425491            252157  0 -   1273513 I
e neoBri1.JH422308           3491820  0 -   5414369 I
e araMac1.AOUJ01470298           637  0 -       895 I
e takFla1.AOOT01113665           306  0 +       323 I
e fr3.HE591725                289786  0 -    411779 I
e ficAlb2.chr2             148476508  0 + 157563209 I
e anoCar2.chr1             148577473  4 + 263920458 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214  0 -  25666195 I
e falPer1.KB390952           2753956  0 -  18327016 I
e falChe1.KB397350           1707310  0 -   3649919 I
e macEug2.GL109592            105897  0 -    117391 I
e geoFor1.JH740018           1736802  0 +   2102797 I
e melGal1.chr7              34310641  0 -  38723565 I
e anaPla1.KB742696           1254472  0 -   1270250 I
e amaVit1.AOCU01222764          1324  0 -      1397 I
e apaSpi1.KB929605            579960  0 +   1015623 I
e cheMyd1.KB605988            134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736  1 +    779542 I
e melUnd1.JH556573            751858  2 +  10614383 I
e rheMac3.chr8              61687801  6 + 150158102 I
e macFas5.chr8              58361392  8 + 146850525 I
e panTro4.chr8              55025844 24898 + 143986469 T

a score=-190995.000000
s hg38.chr8_KI270814v1_alt     97618 170 +    141812 CGCGGACCCC-AG----------GGCCAGACTCTGTGAAGACGCCCAGTTTAG---GCGG---CCCCCACTC--CCGCATCTGCAGGA-------------------------------GTGAGGGAA--CCTGCTCTCAGCC-CAACCCCGG-GGCTTCAGAGTGCCCAGCGCCCACGACTCCGTGCTCTGGGCGCGAATCAAGA---AAAAGTGGACCCTTGGG-T
s ponAbe2.chr8              59067052 171 + 153482349 CGCGGACCCC-AG----------GGCCAGACTCTGTGAAGACGCCCAGTTTAG---GCGG---CTCCCACTC--CTGCATCTGCGGGA-------------------------------GTGAGGGAA--TCTGCTCTCAGCC-CAACCCCGG-GGCTTCAGATTGCCCAGGGCCCACGACTCCGCGCTCTGGGCGCGAATCAAGA---AAAAGTGGACCCTTGGGTT
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8              58361400 171 + 146850525 CCCGGACCCC-AG----------GGAGAGACGCTGCCCCTTGGATTAATTCAG---GCGA------TCGGTG--CTGTAGCAACGGGA-------------------------------GGATGAGAA--CCGGTGCTCAGCC-CCATCCCAGTGGCTGCACAGTGCTCAGAACCCTCGACGCCGAGCTCTCGGAACTGGCCAGGATTCCATATCTGACCCTATGG-T
i macFas5.chr8             I 8 C 0
s ornAna1.Ultra67           12156160 123 -  12745677 --------CG-AG----------GAAGAG-------GACGGCGTC--GTTGAG---GAG-------CTTCTG--CAGCCCCCGCAGGC-------------------------------GGGCGGCGG--C-----CTCGTCC-AGGTCCCGC-GGCT----------CGGGGCCCGCGCC------CTCCAGGAGCCGCTCCACC---GCCGCCCGCTCCC------
i ornAna1.Ultra67          I 1 C 0
s taeGut2.chr18              2065739 177 -  11201131 CAGAAGCAGCAAG----------GGGATGACACTGAGCTGGGACCTGTGTAGGAGAAAGG-AGGTTATGCTA--GAGCTTTAGGAGGGTCTG-----------GGGAATGAGGATGGGGAGCGGAGCA--CTTGCGTGTCTGC-CAGCTGTCC-TGCTT----GTCCCCAGGATG-------------CTCCTTGGGGATCAAAGC---TA-GGAGATACATGCGT--
i taeGut2.chr18            C 0 C 0
s pseHum1.KB221294            560438 143 -   1479532 TGGTGACAGC-AG----------CCGGTGGCAC----CCGATTCCCCCatggg---gagg-agctgctgt-------ccccGGCACCACCCGCATcccccccTGGCAGTCA---------------------------------CAACCACCC-CACT----------CAGGGCAA----------ACCCCCACCGGCAACAGCTC---CACATCgattcctgctg--
i pseHum1.KB221294         C 0 C 0
s galGal4.chr27              2945260 175 +   5209285 CAAGGGCAGC-TGTGCC------GAGGTGACCCCATGCACTGTCCCACAGATg---aaggcagctcctgctc--cctcccctGCACGGATTG--------GCTTGAAGACCGAAACCAAAGGCAAACA--CCAGCGGGCACACACAGCGCCTC-AGCT------CCCTCCGAACA-----------------ACGGCCACCAGAAG---CACAACGCTCCC--CAG--
i galGal4.chr27            C 0 C 0
s allMis1.JH734498           1124842 169 +   1323196 CATTGCCACC-CCTACCCTGTCTGAGCTGCTTC--TGCCTGGGCTTTGACATC---AAGGCAAAGCCCAG-------CCCCAGCACCGCCTC-----------CTGATCCA-----GGcgagggggca--tcagtg--------ctgcctccc-aggc----------ctgggctg-tgcc--catgctcctgctggcaccaaccc---ca-ctgggtcccggctg--
i allMis1.JH734498         C 0 C 0
s pelSin1.JH224655            129525 161 -    257254 TTTGAatagc-tgggccccagggcaactgcccc----ctttgccccccatcag---tggg-----cctgcccagcccccctgtCAGTGCTTG---------------------------GGAGGAGCAGCTCTGCCACTCAAC-CCGGTACCC-ACCT----------TGGGTCTA----------CTTCCCCCAGCCGTGCTCTC---TACGGATCGTCTTACAG--
i pelSin1.JH224655         C 0 C 0
e tetNig2.chr10              6379385   0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382   0 -   6649201 I
e hapBur1.JH425491            252157   0 -   1273513 I
e neoBri1.JH422308           3491820   0 -   5414369 I
e araMac1.AOUJ01470298           637   0 -       895 I
e takFla1.AOOT01113665           306   0 +       323 I
e fr3.HE591725                289786   0 -    411779 I
e ficAlb2.chr2             148476508   0 + 157563209 I
e anoCar2.chr1             148577473   4 + 263920458 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214   0 -  25666195 I
e falPer1.KB390952           2753956   0 -  18327016 I
e falChe1.KB397350           1707310   0 -   3649919 I
e macEug2.GL109592            105897   0 -    117391 I
e geoFor1.JH740018           1736802   0 +   2102797 I
e melGal1.chr7              34310641   0 -  38723565 I
e anaPla1.KB742696           1254472   0 -   1270250 I
e amaVit1.AOCU01222764          1324   0 -      1397 I
e apaSpi1.KB929605            579960   0 +   1015623 I
e cheMyd1.KB605988            134509   0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736   1 +    779542 I
e melUnd1.JH556573            751858   2 +  10614383 I
e rheMac3.chr8              61687801   6 + 150158102 I
e chlSab2.chr8              53281615 167 + 139301422 I
e panTro4.chr8              55025844 24898 + 143986469 T

a score=-107494.000000
s hg38.chr8_KI270814v1_alt     97788  92 +    141812 --------------------------GGGAGGGCGGTGCACTCGGAGACCCTGAGGCCCTCTG-----------------------GGGCCAGCCCTGTCATCCTTTGCCT-TAGGCTCAGCTGTA-------------------GCTGTCACCTGCACAT
s ponAbe2.chr8              59067223  92 + 153482349 --------------------------GGGAGGGCGGTGCACTCGGAGACCATGAGGCCCTCTG-----------------------GGGCCAGCCCTGTCATCCTTTGCCT-TAGGCTCGGCTGTA-------------------GCTGTCACTTGCACAT
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8              58361571  92 + 146850525 --------------------------GAAAGGGCCATGCAGTCGGTGACGTTCAGGACGTCTG-----------------------GGACCAGCCCAGTCGATCTCCGCCA-TGGGCTCAGTTACA-------------------GCTGCCACCTGCACAT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8              53281782  92 + 139301422 --------------------------GGGAGGGCGGTGCTCTCGGCGACCCTTAGGCTTTCTG-----------------------AGACCAGGCCTGCCAGCCTCCGCCG-TGGGCTCAGCTGCA-------------------GCTGCCACCTGCACAT
i chlSab2.chr8             I 167 I 558
s ornAna1.Ultra67           12156283  76 -  12745677 --------------------------GGCCGAACGACGCGCT-GAAGACC---------------------------------------CCGCTCTTCTCCTCCTCCACCGCCTGGCTCTGCCGCT-------------------CCCGCTTCCGGCGCTC
i ornAna1.Ultra67          C 0 C 0
s taeGut2.chr18              2065916  91 -  11201131 GGGAAATTAA-----GGGTTTGGAAGGGGATGATTTTGGGGAC-----TTGCCTGGATCCCAA-----------------------GCCCTGA--------CTCACCACAC-TGCAG----------------------------GCTCCCCACAGCCCCC
i taeGut2.chr18            C 0 C 0
s pseHum1.KB221294            560581  75 -   1479532 gctgcagcag-----ccaccctCTGGGAGAAGGTTCTG------------GTTtgtgtcccca-----------------------gcactg----------ccaccgCCC-CATGG----------------------------G-------TGACACCC
i pseHum1.KB221294         C 0 C 0
s galGal4.chr27              2945435 142 +   5209285 AGGGAAGGAGGCACAGCGTCCCGCAGGAGAGCGCTGCACCCACG----GCCTCTGCATGCCAACACCCCACCACGGGGAGCTGGGCGCCCCGGG--CACCTCCCATCCCAT-TTCAGCcaagtgctgcc------------tgctgctgccagcagagctc
i galGal4.chr27            C 0 C 0
s allMis1.JH734498           1125011 112 +   1323196 gaggatcttgctcctgcgctc---------aggctcag--------------------ccccacgct-------------------gcactggggtaagaagggatttccc-cctggtcagactggtccagactgggggggttttgccttcccctgcagtg
i allMis1.JH734498         C 0 C 0
s pelSin1.JH224655            129686  91 -    257254 G--------------GCAACCGGGAGAACAGGGCGTTCCCGTGC----CCCTCCGCGTCTCAG-----------------------ATACAGCCGGGAATGCGCAGCACAG-GGGAG----------------------------GCAACAGACTACGGGC
i pelSin1.JH224655         C 0 C 0
e tetNig2.chr10              6379385   0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382   0 -   6649201 I
e hapBur1.JH425491            252157   0 -   1273513 I
e neoBri1.JH422308           3491820   0 -   5414369 I
e araMac1.AOUJ01470298           637   0 -       895 I
e takFla1.AOOT01113665           306   0 +       323 I
e fr3.HE591725                289786   0 -    411779 I
e ficAlb2.chr2             148476508   0 + 157563209 I
e anoCar2.chr1             148577473   4 + 263920458 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214   0 -  25666195 I
e falPer1.KB390952           2753956   0 -  18327016 I
e falChe1.KB397350           1707310   0 -   3649919 I
e macEug2.GL109592            105897   0 -    117391 I
e geoFor1.JH740018           1736802   0 +   2102797 I
e melGal1.chr7              34310641   0 -  38723565 I
e anaPla1.KB742696           1254472   0 -   1270250 I
e amaVit1.AOCU01222764          1324   0 -      1397 I
e apaSpi1.KB929605            579960   0 +   1015623 I
e cheMyd1.KB605988            134509   0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736   1 +    779542 I
e melUnd1.JH556573            751858   2 +  10614383 I
e rheMac3.chr8              61687801   6 + 150158102 I
e panTro4.chr8              55025844 24898 + 143986469 T

a score=-307029.000000
s hg38.chr8_KI270814v1_alt     97880 239 +    141812 AGTGCGCTGTAGTAGTGGAGGCAACTGCCGAC---CCTGCTGC----------CACCAC--------------CA--------GC--ACGGGGACC--C-----------------CGCG-GCCA--GGC-----AGCCACGC--GCCGAAGCC--CGCA-GCACAGCTGCA--GCAGGGTGG-------CCGTTCAGCCCCTTC----CTGGCGGCTGCATAGTACCCAGCGCCCGCGACCACGCGCTCAGGGCGCGAGCTATGGAAGAGCGAGCC-CTAGGGCGGGAGGGTGGTGCACTTGGCGACTCT---CAG-------GAGGTCTG----------------------------------------------------------------------------------------------
s ponAbe2.chr8              59067315 239 + 153482349 AGTGCGCTGTAGTAGTGGAGGCAACTGCCGAA---CCTGCTGC----------CACCAC--------------CA--------GC--ACTGGGACC--C-----------------CGCG-GCCA--GGC-----AGCCACGC--GCCGAAGTC--CGCC-GCACAGCTGCA--GCAGGGCGG-------CCATTCAGCCCCTTC----CTGGCGGCTGCACTGTACCCAGCGCCCGCGACCACGCGCTCAGGGCGCGAGCTATGGAAGAGCGAGCC-CTAGGGCCGGAGGGAGGTGCACTTGGCGACTCT---CAG-------GAGGTCTG----------------------------------------------------------------------------------------------
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8              58361663 246 + 146850525 GGCATCCTGCAGCAGCGGTGGCAACCCCCGCCCTGCCCGCTGC----------CACCAC--------------CA--------AT--GC--AGAAC--C-----------------CAGG-GTCG--GGCGCTTAATTCATGC--G-----GTC--GGCC-CGGCAGCTGCA--GGAGAGTGAGAAATGTCAACTCAGCCCCATT----CTGGTTGCTGCATATTGTCCAGCTCCCAGGACCTCACACTCTGTGCGTGGGCCAACAAAGAGTGGAAC-CTGGGGTTGGAGGGAGGTACACTAAGCGACCCT---CAG------CCATGTA------------------------------------------------------------------------------------------------
i macFas5.chr8             C 0 C 0
s ornAna1.Ultra67           12156359 264 -  12745677 ---------------CGCCTCCAGCTGCCGCT---CCTGCTCC----------CGCCTCTGCAGACGCTCGGGCA--------GCGGGCCGGGACC--CTCGCCGCCCTGAGGCGACGCC-GGCC--GGC-----CGCCATGCTGGTCGTCGTC--CGCC-TC-CATCTTCC--CTCGGCCGC-------CCGCGCGGCACCTCC--CACTAAC-GCGCCCTCCTATTGGCCGCCCGCGTCCTCGCA---GGCGATTggcccgcccccgcgcgcgccgccgggggggaagggggggccgccgAGCGCCATG---CCGATTGGGCGAGGCGGG----------------------------------------------------------------------------------------------
i ornAna1.Ultra67          C 0 I 4
s taeGut2.chr18              2066007 177 -  11201131 GGGGCACAGA-------------------GGC---TTGGTGGT-----------------------------------------C--AATGGGCTC--A-----------------CGTT-GCTG--T-----------CCTC--AGTTGTGTT--TG---AAACAGCTGTCAGAGAAAACAG---------AGTCAGAACCAAG-----TGGGGAC--------CCCCA-----CACC------CCCT------------------------------------------GTCCTGTACCCTGCA--------CAG--------GAGTCTA----------------------------------TCCCTGAGA----------------CTTCAGCAATGAAGGCACAGGGGG---TACATGTG
i taeGut2.chr18            C 0 C 0
s pseHum1.KB221294            560656 197 -   1479532 AGAGCGTGGC-------------------GGC---TCCACGGT----------CCCCAC--------------GC--------GC--GGTGATCCC--A-----------------CGGG-GCCA--TAC-----AGACCCAC--GGCAAAGCCCACG---GCACAAGTGC---AGGGAAcag---------cggccgggccggg----ccggggacG------GCCCCAATGAGCACCG----GCCCTTC-----------------------------------GAGCGGCTCCGGGCCC-GCA--------CAG--------CCGCCCG---------------------------------CTCACTG--------------------CTTGGGAGGGGCGTCCCCGAGGG----------G
i pseHum1.KB221294         C 0 C 0
s galGal4.chr27              2945577 260 +   5209285 gCTGCGCCGT-------------------GGC---TCCCCAGCACCAGGAGATCCCCAG--------------CA--------CC--ACAgacctccag-----------------cact-gctt--ttc-----aACTTCCC--AGCCATTCA--TT---CTGCAGATC----GGGGCACGG-------TTCGGCCGGTCCGGGTTTACCAAAGGCAGT----GAGCCAACAAGCAGAGC--AGCGCTCA-----------GCCGGAGcggagctg-ctggggaggagcagccctttgcagtgcagcaCAAACCAG--------ACGTGCAGAGAGAAA-----------------TGGATAagcaccctg-------------------------------cagcccagggcG---GTGGAAAG
i galGal4.chr27            C 0 C 0
s allMis1.JH734498           1125123 232 +   1323196 gggacacggc----------ccgggcctggac---tctacagt----------gcccat--------------gacacccctggc--agcaacagg--a-----------------catt-ggcggctgc-----aacccccc--tgctttccc--ag---gggcaggGGC---GATGCTTGG----------GGCTGTGCTGAG--------------------AGCAACCGTGTCGTGT--GGCTCTGA-----------------------------------GGTCGGACATGGGCTTTGGG--------CTG----------GTTTGGACGGGGC-----------------TGGATGA--TCCCTGCCA-------------GCCCCACAATGCTGAGATCCTACAAAT---GGTGCCTG
i allMis1.JH734498         C 0 C 0
s pelSin1.JH224655            129777 284 -    257254 GAGACCCGAC---------------------C---TTCACCTG----------CAGCAG--------------ACCAGAAGCTGC--CGAAAGGCC--G-----------------CGTTAGCTG--T-----------CCCT--GGCGGTAGC--TGCCTGGGCAGATGT---GCAGCCTGA-------CTATTccccccccAG-------------------GCTCTCTCAAACGCTGCCTCGCCTTCGT-------GCCATCGGGTTATTGATT-CAGGGGCTGGGCCGTTCCAGGCCT-GGG--------TGG----------GTGAGGGGGAGAAAGATCCTTCGATCTTGGCGGGAGCGTTAGCTGTCAGCATCAGGCAGCTGCTTTCCACCGAGGAGAAGcaaggagggctggggaggg
i pelSin1.JH224655         C 0 C 0
e tetNig2.chr10              6379385   0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382   0 -   6649201 I
e hapBur1.JH425491            252157   0 -   1273513 I
e neoBri1.JH422308           3491820   0 -   5414369 I
e araMac1.AOUJ01470298           637   0 -       895 I
e takFla1.AOOT01113665           306   0 +       323 I
e fr3.HE591725                289786   0 -    411779 I
e ficAlb2.chr2             148476508   0 + 157563209 I
e anoCar2.chr1             148577473   4 + 263920458 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214   0 -  25666195 I
e falPer1.KB390952           2753956   0 -  18327016 I
e falChe1.KB397350           1707310   0 -   3649919 I
e macEug2.GL109592            105897   0 -    117391 I
e geoFor1.JH740018           1736802   0 +   2102797 I
e melGal1.chr7              34310641   0 -  38723565 I
e anaPla1.KB742696           1254472   0 -   1270250 I
e amaVit1.AOCU01222764          1324   0 -      1397 I
e apaSpi1.KB929605            579960   0 +   1015623 I
e cheMyd1.KB605988            134509   0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736   1 +    779542 I
e melUnd1.JH556573            751858   2 +  10614383 I
e rheMac3.chr8              61687801   6 + 150158102 I
e chlSab2.chr8              53281874 558 + 139301422 I
e panTro4.chr8              55025844 24898 + 143986469 T

a score=-110609.000000
s hg38.chr8_KI270814v1_alt     98119 48 +    141812 GGAC---CAGCCC-----------TGCCAGCTTCCACC-------GTGG--GCTCAGCTATTGCTGCCATC---------------------------------------------------------------
s ponAbe2.chr8              59067554 48 + 153482349 GGTC---CAGCCC-----------TGCCAGCTTCCACC-------GTGG--GCTCAGCTACTGCTGCCATC---------------------------------------------------------------
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8              58361909 48 + 146850525 GGAT---CAGCCC-----------TATTAGCGTCCATC-------GTGG--GCTCAGTTGCAGCTGCCACC---------------------------------------------------------------
i macFas5.chr8             C 0 C 0
s chlSab2.chr8              53282432 48 + 139301422 GGAC---CAGCCC-----------TGCTAGCCTCCATC-------GTGG--GCTCAGTTGCAGCTGCCACC---------------------------------------------------------------
i chlSab2.chr8             I 558 C 0
s ornAna1.Ultra67           12156627 49 -  12745677 GGAG---CCGA-----------------AGCTCCCGTCGGAGGGGGCGG--GCTCTCCTTTTCTTTTTCTT---------------------------------------------------------------
i ornAna1.Ultra67          I 4 I 31
s taeGut2.chr18              2066184 76 -  11201131 GAGT---TATCCA----------------GGCAATGCC-------CTGA--GCACTGC----------------AGGGGG--------GGAAGAGG------AAAAAGGGAAGTTTAATGCCAGCTTTGCTCCC
i taeGut2.chr18            C 0 C 0
s pseHum1.KB221294            560853 90 -   1479532 GGCT---CGCCCCG----------CGCTGGCCGACACC-------ACGT--GCACCGCGTC--CTCCAGCTCGTAGAAGG-----CCTGGAAGAGGTCC---GGAGAGG------------TGGCCTGGCACTC
i pseHum1.KB221294         C 0 C 0
s galGal4.chr27              2945837 59 +   5209285 AAGC---CATCCCA--AAGCCTCCCCCACGCCAAAGTC-------ACGC--GCTC------------------------------------AGAGC-------------------------CACTTCCGTGCAC
i galGal4.chr27            C 0 C 0
s allMis1.JH734498           1125355 74 +   1323196 AAACTTGCATCCA----------------------GCC-------ATGACGGCAC-------------------AGTAGGCACTGCCCGTGCCAGGCCATGGGAACAGC------------TACGGCAGCGTCC
i allMis1.JH734498         C 0 C 0
s pelSin1.JH224655            130061 71 -    257254 gaac---aaaCCGAGGAAGCTTGCAGCCTGGC----CC-------ACGC--CCAC------------CTTCCTTAGCAGG-----------ACAGG------G------------------TCCCGCCGCAAAG
i pelSin1.JH224655         C 0 C 0
e tetNig2.chr10              6379385  0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382  0 -   6649201 I
e hapBur1.JH425491            252157  0 -   1273513 I
e neoBri1.JH422308           3491820  0 -   5414369 I
e araMac1.AOUJ01470298           637  0 -       895 I
e takFla1.AOOT01113665           306  0 +       323 I
e fr3.HE591725                289786  0 -    411779 I
e ficAlb2.chr2             148476508  0 + 157563209 I
e anoCar2.chr1             148577473  4 + 263920458 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214  0 -  25666195 I
e falPer1.KB390952           2753956  0 -  18327016 I
e falChe1.KB397350           1707310  0 -   3649919 I
e macEug2.GL109592            105897  0 -    117391 I
e geoFor1.JH740018           1736802  0 +   2102797 I
e melGal1.chr7              34310641  0 -  38723565 I
e anaPla1.KB742696           1254472  0 -   1270250 I
e amaVit1.AOCU01222764          1324  0 -      1397 I
e apaSpi1.KB929605            579960  0 +   1015623 I
e cheMyd1.KB605988            134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736  1 +    779542 I
e melUnd1.JH556573            751858  2 +  10614383 I
e rheMac3.chr8              61687801  6 + 150158102 I
e panTro4.chr8              55025844 24898 + 143986469 T

a score=-15393.000000
s hg38.chr8_KI270814v1_alt     98167  6 +    141812 -----TG---------CACA
s ponAbe2.chr8              59067602  6 + 153482349 -----TG---------CATA
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8              58361957  6 + 146850525 -----TG---------CACA
i macFas5.chr8             C 0 C 0
s chlSab2.chr8              53282480  6 + 139301422 -----TG---------CACA
i chlSab2.chr8             C 0 I 258
s taeGut2.chr18              2066260 18 -  11201131 AGCCCTGTTTTACCTGCA--
i taeGut2.chr18            C 0 C 0
s pseHum1.KB221294            560943  2 -   1479532 ----------------CA--
i pseHum1.KB221294         C 0 C 0
s galGal4.chr27              2945896  9 +   5209285 AGAACTG---------CA--
i galGal4.chr27            C 0 C 0
s allMis1.JH734498           1125429 12 +   1323196 CGCAATGCCT------CA--
i allMis1.JH734498         C 0 C 0
s pelSin1.JH224655            130132  7 -    257254 GGGGA-----------GA--
i pelSin1.JH224655         C 0 C 0
e ornAna1.Ultra67           12156676 31 -  12745677 I
e tetNig2.chr10              6379385  0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382  0 -   6649201 I
e hapBur1.JH425491            252157  0 -   1273513 I
e neoBri1.JH422308           3491820  0 -   5414369 I
e araMac1.AOUJ01470298           637  0 -       895 I
e takFla1.AOOT01113665           306  0 +       323 I
e fr3.HE591725                289786  0 -    411779 I
e ficAlb2.chr2             148476508  0 + 157563209 I
e anoCar2.chr1             148577473  4 + 263920458 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214  0 -  25666195 I
e falPer1.KB390952           2753956  0 -  18327016 I
e falChe1.KB397350           1707310  0 -   3649919 I
e macEug2.GL109592            105897  0 -    117391 I
e geoFor1.JH740018           1736802  0 +   2102797 I
e melGal1.chr7              34310641  0 -  38723565 I
e anaPla1.KB742696           1254472  0 -   1270250 I
e amaVit1.AOCU01222764          1324  0 -      1397 I
e apaSpi1.KB929605            579960  0 +   1015623 I
e cheMyd1.KB605988            134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736  1 +    779542 I
e melUnd1.JH556573            751858  2 +  10614383 I
e rheMac3.chr8              61687801  6 + 150158102 I
e panTro4.chr8              55025844 24898 + 143986469 T

a score=-14313.000000
s hg38.chr8_KI270814v1_alt     98173 20 +    141812 TGCCCCACGGCAGC----ACCTGT-
s ponAbe2.chr8              59067608 20 + 153482349 TGCCCCATGGCAGC----ACCTGT-
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8              58361963 20 + 146850525 GGGTGCAGGGAAGC----AGCTGT-
i macFas5.chr8             C 0 C 0
s taeGut2.chr18              2066278 17 -  11201131 --------GACACCATCACCTTGGT
i taeGut2.chr18            C 0 C 0
s pseHum1.KB221294            560945  6 -   1479532 --------GGTACC-----------
i pseHum1.KB221294         C 0 C 0
s galGal4.chr27              2945905 13 +   5209285 --------TGCACC----ACGTGGA
i galGal4.chr27            C 0 C 0
s allMis1.JH734498           1125441 13 +   1323196 --------GGGCCA----AACCCGT
i allMis1.JH734498         C 0 C 0
s pelSin1.JH224655            130139  6 -    257254 --------AGCCCC-----------
i pelSin1.JH224655         C 0 C 0
e ornAna1.Ultra67           12156676 31 -  12745677 I
e tetNig2.chr10              6379385  0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382  0 -   6649201 I
e hapBur1.JH425491            252157  0 -   1273513 I
e neoBri1.JH422308           3491820  0 -   5414369 I
e araMac1.AOUJ01470298           637  0 -       895 I
e takFla1.AOOT01113665           306  0 +       323 I
e fr3.HE591725                289786  0 -    411779 I
e ficAlb2.chr2             148476508  0 + 157563209 I
e anoCar2.chr1             148577473  4 + 263920458 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214  0 -  25666195 I
e falPer1.KB390952           2753956  0 -  18327016 I
e falChe1.KB397350           1707310  0 -   3649919 I
e macEug2.GL109592            105897  0 -    117391 I
e geoFor1.JH740018           1736802  0 +   2102797 I
e melGal1.chr7              34310641  0 -  38723565 I
e anaPla1.KB742696           1254472  0 -   1270250 I
e amaVit1.AOCU01222764          1324  0 -      1397 I
e apaSpi1.KB929605            579960  0 +   1015623 I
e cheMyd1.KB605988            134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736  1 +    779542 I
e melUnd1.JH556573            751858  2 +  10614383 I
e rheMac3.chr8              61687801  6 + 150158102 I
e chlSab2.chr8              53282486 258 + 139301422 I
e panTro4.chr8              55025844 24898 + 143986469 T

a score=-46591.000000
s hg38.chr8_KI270814v1_alt     98193 58 +    141812 GGCAAATCCCGACCTTGCCCGCCCCACTAGCAGCGC--------------GGTCCCCA------AGGTCAGA----C-----------ACCGC
s ponAbe2.chr8              59067628 58 + 153482349 GGCAAATCCCGACCTTGCCCGCTCCACTAGCAGCGC--------------GGTTCCCA------GGGTCAGA----C-----------ACCGC
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8              58361983 58 + 146850525 GGCAACCTCCCACCGTGCCCACGCCACCAACAGTGC--------------AAAACCTA------GGACCAGA----C-----------GTCAC
i macFas5.chr8             C 0 C 0
s ornAna1.Ultra67           12156707 64 -  12745677 GGTGAGTTGCGGCAGCGGCAGCTGCACATGTGGGTT--------------TGTTTATAAGGAGGAGGTTAGA----A-----------GCCGC
i ornAna1.Ultra67          I 31 C 0
s taeGut2.chr18              2066295 57 -  11201131 GTTGTGCCATCGCCTGGTCC----CCACATTCTTCC--------------TCACCCCA------CAGGAGTA----CCGGC--------CTGC
i taeGut2.chr18            C 0 C 0
s pseHum1.KB221294            560951 61 -   1479532 GCCGCAGCGTAGCCAGGCTC----CTCCAGACCTCC--------------CGCTCCGA------GGGGCAGG----GCGGCACG----GCCGC
i pseHum1.KB221294         C 0 C 0
s galGal4.chr27              2945918 78 +   5209285 GGTCTCTCACGGCTCTGCTG----CACGACGGCTGCAGAAGAGGCAGCGATGCTCTGC------TGGGCagg----cagacacacac-acagc
i galGal4.chr27            C 0 C 0
s allMis1.JH734498           1125454 70 +   1323196 GCCCTCTCCGGGGCAGGCCCA--GCCCCAGGGCTGC---------------CCCCCGC------CGGGCACAGGCCCTGACACTCACTATTGC
i allMis1.JH734498         C 0 C 0
s pelSin1.JH224655            130145 56 -    257254 GACCTCCCCGAGCCTGGAAC---GTCTCAGGGACGT-----------------------------GGGCACA----GTGGGTCGGTC-TCCGC
i pelSin1.JH224655         C 0 C 0
e tetNig2.chr10              6379385  0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382  0 -   6649201 I
e hapBur1.JH425491            252157  0 -   1273513 I
e neoBri1.JH422308           3491820  0 -   5414369 I
e araMac1.AOUJ01470298           637  0 -       895 I
e takFla1.AOOT01113665           306  0 +       323 I
e fr3.HE591725                289786  0 -    411779 I
e ficAlb2.chr2             148476508  0 + 157563209 I
e anoCar2.chr1             148577473  4 + 263920458 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214  0 -  25666195 I
e falPer1.KB390952           2753956  0 -  18327016 I
e falChe1.KB397350           1707310  0 -   3649919 I
e macEug2.GL109592            105897  0 -    117391 I
e geoFor1.JH740018           1736802  0 +   2102797 I
e melGal1.chr7              34310641  0 -  38723565 I
e anaPla1.KB742696           1254472  0 -   1270250 I
e amaVit1.AOCU01222764          1324  0 -      1397 I
e apaSpi1.KB929605            579960  0 +   1015623 I
e cheMyd1.KB605988            134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736  1 +    779542 I
e melUnd1.JH556573            751858  2 +  10614383 I
e rheMac3.chr8              61687801  6 + 150158102 I
e chlSab2.chr8              53282486 258 + 139301422 I
e panTro4.chr8              55025844 24898 + 143986469 T

a score=-41102.000000
s hg38.chr8_KI270814v1_alt     98251  8 +    141812 -----CACTGTGC---------
s panTro4.chr8              55000946  8 + 143986469 -----cACTGCGC---------
i panTro4.chr8             T 24898 C 0
s ponAbe2.chr8              59067686  8 + 153482349 -----CACTGCGC---------
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8              58362041  8 + 146850525 -----CGAGGAGC---------
i macFas5.chr8             C 0 C 0
s ornAna1.Ultra67           12156771  6 -  12745677 -------CGGCTT---------
i ornAna1.Ultra67          C 0 I 4
s taeGut2.chr18              2066352 16 -  11201131 A-TCCCCTGGTGT----G-ACA
i taeGut2.chr18            C 0 C 0
s pseHum1.KB221294            561012 16 -   1479532 C-AGCTCGCCCGC----G-TCC
i pseHum1.KB221294         C 0 C 0
s galGal4.chr27              2945996 17 +   5209285 g-ACCCCAGCTGC----GCTCA
i galGal4.chr27            C 0 C 0
s allMis1.JH734498           1125524 21 +   1323196 ACGTTCCTTCTGCAGGAG-TCT
i allMis1.JH734498         C 0 C 0
s pelSin1.JH224655            130201 16 -    257254 A-GCACAGGAAGC----C-TCG
i pelSin1.JH224655         C 0 C 0
e tetNig2.chr10              6379385  0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382  0 -   6649201 I
e hapBur1.JH425491            252157  0 -   1273513 I
e neoBri1.JH422308           3491820  0 -   5414369 I
e araMac1.AOUJ01470298           637  0 -       895 I
e takFla1.AOOT01113665           306  0 +       323 I
e fr3.HE591725                289786  0 -    411779 I
e ficAlb2.chr2             148476508  0 + 157563209 I
e anoCar2.chr1             148577473  4 + 263920458 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214  0 -  25666195 I
e falPer1.KB390952           2753956  0 -  18327016 I
e falChe1.KB397350           1707310  0 -   3649919 I
e macEug2.GL109592            105897  0 -    117391 I
e geoFor1.JH740018           1736802  0 +   2102797 I
e melGal1.chr7              34310641  0 -  38723565 I
e anaPla1.KB742696           1254472  0 -   1270250 I
e amaVit1.AOCU01222764          1324  0 -      1397 I
e apaSpi1.KB929605            579960  0 +   1015623 I
e cheMyd1.KB605988            134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736  1 +    779542 I
e melUnd1.JH556573            751858  2 +  10614383 I
e rheMac3.chr8              61687801  6 + 150158102 I
e chlSab2.chr8              53282486 258 + 139301422 I

a score=-484.000000
s hg38.chr8_KI270814v1_alt     98259 9 +    141812 CTGATTTGG
s panTro4.chr8              55000954 9 + 143986469 CTGATTTGG
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59067694 9 + 153482349 CTGATTTAG
i ponAbe2.chr8             C 0 C 0
s ornAna1.Ultra67           12156781 3 -  12745677 CCG------
i ornAna1.Ultra67          I 4 C 0
s taeGut2.chr18              2066368 9 -  11201131 CTGCTCAGT
i taeGut2.chr18            C 0 n 0
s pseHum1.KB221294            561028 9 -   1479532 TCGCTCTGT
i pseHum1.KB221294         C 0 I 3
s galGal4.chr27              2946013 9 +   5209285 CTGCCACGT
i galGal4.chr27            C 0 I 24
s allMis1.JH734498           1125545 9 +   1323196 CTGCCTTTG
i allMis1.JH734498         C 0 I 24
s pelSin1.JH224655            130217 9 -    257254 GAGCCTGGG
i pelSin1.JH224655         C 0 I 5
e tetNig2.chr10              6379385 0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382 0 -   6649201 I
e hapBur1.JH425491            252157 0 -   1273513 I
e neoBri1.JH422308           3491820 0 -   5414369 I
e araMac1.AOUJ01470298           637 0 -       895 I
e takFla1.AOOT01113665           306 0 +       323 I
e fr3.HE591725                289786 0 -    411779 I
e ficAlb2.chr2             148476508 0 + 157563209 I
e anoCar2.chr1             148577473 4 + 263920458 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214 0 -  25666195 I
e falPer1.KB390952           2753956 0 -  18327016 I
e falChe1.KB397350           1707310 0 -   3649919 I
e macEug2.GL109592            105897 0 -    117391 I
e geoFor1.JH740018           1736802 0 +   2102797 I
e melGal1.chr7              34310641 0 -  38723565 I
e anaPla1.KB742696           1254472 0 -   1270250 I
e amaVit1.AOCU01222764          1324 0 -      1397 I
e apaSpi1.KB929605            579960 0 +   1015623 I
e cheMyd1.KB605988            134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736 1 +    779542 I
e melUnd1.JH556573            751858 2 +  10614383 I
e rheMac3.chr8              61687801 6 + 150158102 I
e macFas5.chr8              58362049 0 + 146850525 C
e chlSab2.chr8              53282486 258 + 139301422 I

a score=-149791.000000
s hg38.chr8_KI270814v1_alt     98268 250 +    141812 GTAG------------TCTGTTCCG---CAGCTGCAGGAGGGCGGGAACCGGCCCTCATCCCCATCGCGAT-------GGCTG---CAAAGAGT----CCAGCGCCCTGGGCCCAGAGCTCTGGACTGGGGCCAAGGAAG---------AGCGG-ATCCCAC-----GGTGTGAGGGCA-----GTGAACTTGGCGAAACTCAGGACGT-------CTGG-GCTAGCCCT-GC--------C-------------------------AGCCTCCGCCCT------------GAACTTATGTGCAG-TTACCACCTGCACATGGC-------------ACGGGGCCGC-----------GG-GAGTGGCAACCCCCAACT
s panTro4.chr8              55000963 220 + 143986469 GTAG------------TCTGTTCCG---CAGGTGCAGGAGGGCGGGAACCGGCCCTCATCCCCATCGCGAT-------GGCTG---CAAGGAAC----CCAGCGCCCTGGGCTCAGACTTCTGGGCTCGGCCCA--------------------------------------------------GTGAACTTGGCGAAACTCAGGACGT-------CTGG-GCTAGCCCT-GC--------C-------------------------AGCCTCCGCCCT------------GAACTTATGTGCAG-TTACCACCTGCACATGGC-------------ACGGGGCCGT-----------GG-GAGTGGCAACCCCCAACT
i panTro4.chr8             C 0 I 11
s ponAbe2.chr8              59067703 250 + 153482349 GTAG------------TCTGTTCCG---CAGCTGCAGGAGGGCGGGAACCGGCCCTCATCCCCATCGCGAT-------GGCTG---CAAAGAGC----CCAGCGCCCCGGACTCAGAGCTCTGGGCTCGGGCCAAGGAAG---------AGCGG-ATCCCAG-----GGTGTGAGGGCA-----GTGAACTTGGCGAAACTCAGGGCGT-------CTGG-GCTAGCCCT-GC--------C-------------------------AGCCTCCGCCCT------------GAACTTATGTGCAG-TTATCACCTGCACATGGC-------------ACGGGGCCGT-----------GG-GAGTGGCAACCCCCATCT
i ponAbe2.chr8             C 0 C 0
s ornAna1.Ultra67           12156784 234 -  12745677 ---G------------CCCGTCCTG---CC----------------------CCCCCCTCCCCGAGGAGAG-------GACTGGTTGAAGAAGTGGCGCCGGCGGGGTGGGCGTCGA----TGGGGTGGGGAGATAGATG---------AGCGG-GGCCGGGCCGGTGGCGTGGCGGCGGCTGCGAGAGCTGGCGGGAA---GGGGCGG-------CTGTCGCTTGTCCC-TCGCGTCCGGC-------------------------CGCCTCAGCCCC------------G---TCCCGCGCCG-CCTCCACC----CGTGGC-------------TTTAG--CGA-----------GG-CGGCGCCTCCCCCCggg-
i ornAna1.Ultra67          C 0 C 0
s pseHum1.KB221294            561040 251 -   1479532 GTGCCCTCGTCCCCGTCCGCCTCCA---CCGCGTCCCCGTCGCG-----------------CTGCAGCTGC-------TGCCGGCCGAGCAAGC----CGGGTGCCGAGGTGAGGG---ACACGGCCTCGGCGCTGGCGT-----CGGGGGTGA-AGCCGGC-----GGCGCGGAAGCAGCTG-GCGA-------TGAGCCCCGGGTGA------------ACG--TCGC-CC--------C-------------------------AGGCTTGCGCCA----------------GCATGTGCAGCACATCCAGCAGGCTGGGC----------TGCCCCGCGCCGCGCTCCGCCGGCAG-CCACCGCAGCAACCGGCG
i pseHum1.KB221294         I 3 C 0
s galGal4.chr27              2946046 250 +   5209285 GTGTGAGAGCCACCAGCTGCCCTCAGGCCTCCAGCCATGCAGTGAGGG--------GCATCCCATAAAGGC-------TGCAGGACGCACccgc----acagcacagag-----------cacagcactgctgc-agctg-----cgtGGCTGC-ATTCTGC-----TGCTCCGGAGCAGTGG-GAG-----------GCACC------------------ACT--CCTC-GC--------C-------------------------CAGCTCGGGCTC-----------------TGTTTGCAG-AAGTCTCCTCTGCTGGGC--TCGCAAAGTTCACCACGACGCCCTATTTCCCAAG-Cactcacagcacacagct
i galGal4.chr27            I 24 C 0
s allMis1.JH734498           1125578 279 +   1323196 GTAC------------CTGCGGGCAGA-CAGAAGCTCGTGAGCGGGGA----GGCTGGATGCTGCCCAGG---------GCAGTACAGACAAGC----CCAGAACC--------------CACAGCAAGGGCCCAGGAGG----ACCAGGCCAC-CCCCCAG-----GCCTAGCAAACAAGGG-AAGAACCCTGTCCAGCCCCAGAAGA--CCAGCCAGG-CCT--TCGCTGC--------C-------------------------CGGCTGGATCCCAGCTATCCTGGGTAAAATGGCTGCTC-AGAGCGAGCCCACAGGGCAGACGCCAGAGACCCCAGATGGGCATCAG-----AG-CAGCCGCAGGTCCCGGCT
i allMis1.JH734498         I 24 C 0
s pelSin1.JH224655            130231 305 -    257254 GGAC------------TTGGCTCCG---CAAGGTTCATGCCACGGGGC----TATAAATAGCCATGCAGCCATTCAGACGCAGGCAGGAAATCC----TccgccctgcagcctgagcccaaaccgCTTCGCTGCCGGTTTTAGCCCGGGAGCGCGAGCCCGA-----GGCAAGTGACCTGGGC-CCGGAGACTCATGGGCCCCGGGTATTTCTGATCTGA-GCC--TCCT-GC--------CTCCTCCAAGCAGAGCCAGCCTCCGGCAGCCCGGCCAC-------------------GCTGCCA-AGGGCAGGCGggctgagg-------cagctccctgcaaTGCAGCACG-----AGTCTATTAATAGTTCCAGC-
i pelSin1.JH224655         I 5 C 0
e tetNig2.chr10              6379385   0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382   0 -   6649201 I
e hapBur1.JH425491            252157   0 -   1273513 I
e neoBri1.JH422308           3491820   0 -   5414369 I
e araMac1.AOUJ01470298           637   0 -       895 I
e takFla1.AOOT01113665           306   0 +       323 I
e fr3.HE591725                289786   0 -    411779 I
e ficAlb2.chr2             148476508   0 + 157563209 I
e anoCar2.chr1             148577473   4 + 263920458 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214   0 -  25666195 I
e falPer1.KB390952           2753956   0 -  18327016 I
e falChe1.KB397350           1707310   0 -   3649919 I
e macEug2.GL109592            105897   0 -    117391 I
e geoFor1.JH740018           1736802   0 +   2102797 I
e melGal1.chr7              34310641   0 -  38723565 I
e anaPla1.KB742696           1254472   0 -   1270250 I
e amaVit1.AOCU01222764          1324   0 -      1397 I
e apaSpi1.KB929605            579960   0 +   1015623 I
e cheMyd1.KB605988            134509   0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736   1 +    779542 I
e melUnd1.JH556573            751858   2 +  10614383 I
e taeGut2.chr18              2066377   0 -  11201131 I
e rheMac3.chr8              61687801   6 + 150158102 I
e macFas5.chr8              58362049   0 + 146850525 C
e chlSab2.chr8              53282486 258 + 139301422 I

a score=-7611.000000
s hg38.chr8_KI270814v1_alt     98518 25 +    141812 CGGCCAGCAGCCACC-------AGCAGCATAG
s ponAbe2.chr8              59067953 25 + 153482349 CTGCCGGCAGCCACC-------AGCAGCATGG
i ponAbe2.chr8             C 0 C 0
s ornAna1.Ultra67           12157018 25 -  12745677 cgggcgggggccgcg-------agcggcggag
i ornAna1.Ultra67          C 0 n 0
s pseHum1.KB221294            561291 18 -   1479532 CCGGTAGTGACCCTT--------------GAG
i pseHum1.KB221294         C 0 C 0
s galGal4.chr27              2946296 32 +   5209285 ctcttTGCTGCCCTCTCAGAAAAGCACTGGTG
i galGal4.chr27            C 0 C 0
s allMis1.JH734498           1125857 18 +   1323196 GGGGCAGTGGAGACC--------------GGG
i allMis1.JH734498         C 0 C 0
s pelSin1.JH224655            130536 18 -    257254 CACTTTGTGTCTTTC--------------CAA
i pelSin1.JH224655         C 0 C 0
e tetNig2.chr10              6379385  0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382  0 -   6649201 I
e hapBur1.JH425491            252157  0 -   1273513 I
e neoBri1.JH422308           3491820  0 -   5414369 I
e araMac1.AOUJ01470298           637  0 -       895 I
e takFla1.AOOT01113665           306  0 +       323 I
e fr3.HE591725                289786  0 -    411779 I
e ficAlb2.chr2             148476508  0 + 157563209 I
e anoCar2.chr1             148577473  4 + 263920458 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214  0 -  25666195 I
e falPer1.KB390952           2753956  0 -  18327016 I
e falChe1.KB397350           1707310  0 -   3649919 I
e macEug2.GL109592            105897  0 -    117391 I
e geoFor1.JH740018           1736802  0 +   2102797 I
e melGal1.chr7              34310641  0 -  38723565 I
e anaPla1.KB742696           1254472  0 -   1270250 I
e amaVit1.AOCU01222764          1324  0 -      1397 I
e apaSpi1.KB929605            579960  0 +   1015623 I
e cheMyd1.KB605988            134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736  1 +    779542 I
e melUnd1.JH556573            751858  2 +  10614383 I
e taeGut2.chr18              2066377  0 -  11201131 I
e rheMac3.chr8              61687801  6 + 150158102 I
e macFas5.chr8              58362049  0 + 146850525 C
e chlSab2.chr8              53282486 258 + 139301422 I
e panTro4.chr8              55001183 11 + 143986469 I

a score=-39987.000000
s hg38.chr8_KI270814v1_alt     98543 159 +    141812 ACTCCAGGACCATACGC-----TGCCATGACCC--CTCGGTTAGG------CAGTCAGCCCCGTAGCCGCAGGAGGGCGGGAAT--CGGCGCTCAGCC----------------------AAACCCCATGGCTGCACAATGCCCACGGCCTGCGAGTCCGCGCTTCTGCACCGGCCAAA-GAAGAGCAG---------GTACTGCG
s ponAbe2.chr8              59067978 159 + 153482349 ACTCCAGGACCATACGC-----TGCCATGACCC--CTCGATTAGG------CAGTCAGCCCCGCAGCCGCAGGAGGGCGGGAAT--CGGCGCTCAGCC----------------------AAACCCCATGGCTGCAGAATGCCCACGGCCTGCGAGTCCGCGCTCCCGCACGGGCCAAA-GAAGAGCAG---------GCACTGCA
i ponAbe2.chr8             C 0 C 0
s pseHum1.KB221294            561309 137 -   1479532 -GTC-----GCCGGCGA-----TGCCG-CGGTCCAGGGGCTGGGC------CAGG----------GCGGT-GGCCGGCGGGACG--------AAGACC------------------------ATCCTGACGTTG------GACAGCTGGAGGTAGGGGTGCGCCTCGTGCTtggccagg--aggagcaggacgCTCTTGCCCTGCC
i pseHum1.KB221294         C 0 C 0
s galGal4.chr27              2946328 173 +   5209285 -GTCCTAAAACGGACAC-----TGCCACCAGTT--GTGGCTGTGC------CACGCTGCTCCACCGCAGC-TGGCTGCAGAATG--CAATGCAAAACCCCACCAGTAAGAGCGGATCCCAAAACCCCAAC-CTG------CTCAGCT---------TCTGCCCCGCTTCTCTCATCAGTTCCAAAGCTGAATCTACTTGCAACACC
i galGal4.chr27            C 0 C 0
s allMis1.JH734498           1125875 140 +   1323196 -GCCCTGGGCCTGGCGCGTTCTTACCGCCTCCT--CCGGCTGTGCCTCCTGCAGG----------GCgac-agggagcgggacc--------gggacc------------------------------------------ggctgcgggatgtggaccgggagcgggagcgggaccggg--acGAGTAGGATATGGACGAGCTGCT
i allMis1.JH734498         C 0 C 0
s pelSin1.JH224655            130554 111 -    257254 -ACCTTTGTACTGACACG----CGCTG-ACCCC--GGGGCCGTGC------CAGG----------------TGGATGCACAAGCTCCAGCGTAGGGCC-------------------------------------------TCAGAG------GGGGCCTCTCCAGACAAATGGCTGGT----------------GTTTAGGTGCA
i pelSin1.JH224655         C 0 C 0
e ornAna1.Ultra67           12157043   0 -  12745677 I
e tetNig2.chr10              6379385   0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382   0 -   6649201 I
e hapBur1.JH425491            252157   0 -   1273513 I
e neoBri1.JH422308           3491820   0 -   5414369 I
e araMac1.AOUJ01470298           637   0 -       895 I
e takFla1.AOOT01113665           306   0 +       323 I
e fr3.HE591725                289786   0 -    411779 I
e ficAlb2.chr2             148476508   0 + 157563209 I
e anoCar2.chr1             148577473   4 + 263920458 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214   0 -  25666195 I
e falPer1.KB390952           2753956   0 -  18327016 I
e falChe1.KB397350           1707310   0 -   3649919 I
e macEug2.GL109592            105897   0 -    117391 I
e geoFor1.JH740018           1736802   0 +   2102797 I
e melGal1.chr7              34310641   0 -  38723565 I
e anaPla1.KB742696           1254472   0 -   1270250 I
e amaVit1.AOCU01222764          1324   0 -      1397 I
e apaSpi1.KB929605            579960   0 +   1015623 I
e cheMyd1.KB605988            134509   0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736   1 +    779542 I
e melUnd1.JH556573            751858   2 +  10614383 I
e taeGut2.chr18              2066377   0 -  11201131 I
e rheMac3.chr8              61687801   6 + 150158102 I
e macFas5.chr8              58362049   0 + 146850525 C
e chlSab2.chr8              53282486 258 + 139301422 I
e panTro4.chr8              55001183  11 + 143986469 I

a score=-15408.000000
s hg38.chr8_KI270814v1_alt     98702 21 +    141812 GCAGCAGCGGTGGCAACC------------CCC----------
s ponAbe2.chr8              59068137 21 + 153482349 GCAGCAGAGGTGGCAACC------------CCG----------
i ponAbe2.chr8             C 0 C 0
s rheMac3.chr8              61687807 21 + 150158102 GCAGCAGCGGTGGCAACC------------CCC----------
i rheMac3.chr8             I 6 C 0
s pseHum1.KB221294            561446 34 -   1479532 ---------GCCGCATCCCCTCGTTGAACTCCCGCAGCCACTC
i pseHum1.KB221294         C 0 C 0
s galGal4.chr27              2946501 30 +   5209285 ---------AGCAGATCC---AGCTCAGTCCCAGCA-CGACTG
i galGal4.chr27            C 0 C 0
s allMis1.JH734498           1126015 21 +   1323196 ---------GCGGGAGCT------------GCCGCA-GGACCC
i allMis1.JH734498         C 0 C 0
s pelSin1.JH224655            130665 18 -    257254 ---------GCCTCACCC------------TCTGTA-CCA---
i pelSin1.JH224655         C 0 C 0
e ornAna1.Ultra67           12157043  0 -  12745677 I
e tetNig2.chr10              6379385  0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382  0 -   6649201 I
e hapBur1.JH425491            252157  0 -   1273513 I
e neoBri1.JH422308           3491820  0 -   5414369 I
e araMac1.AOUJ01470298           637  0 -       895 I
e takFla1.AOOT01113665           306  0 +       323 I
e fr3.HE591725                289786  0 -    411779 I
e ficAlb2.chr2             148476508  0 + 157563209 I
e anoCar2.chr1             148577473  4 + 263920458 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214  0 -  25666195 I
e falPer1.KB390952           2753956  0 -  18327016 I
e falChe1.KB397350           1707310  0 -   3649919 I
e macEug2.GL109592            105897  0 -    117391 I
e geoFor1.JH740018           1736802  0 +   2102797 I
e melGal1.chr7              34310641  0 -  38723565 I
e anaPla1.KB742696           1254472  0 -   1270250 I
e amaVit1.AOCU01222764          1324  0 -      1397 I
e apaSpi1.KB929605            579960  0 +   1015623 I
e cheMyd1.KB605988            134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736  1 +    779542 I
e melUnd1.JH556573            751858  2 +  10614383 I
e taeGut2.chr18              2066377  0 -  11201131 I
e macFas5.chr8              58362049  0 + 146850525 C
e chlSab2.chr8              53282486 258 + 139301422 I
e panTro4.chr8              55001183 11 + 143986469 I

a score=2100.000000
s hg38.chr8_KI270814v1_alt     98723 1 +    141812 G
s panTro4.chr8              55001194 1 + 143986469 G
i panTro4.chr8             I 11 C 0
s ponAbe2.chr8              59068158 1 + 153482349 G
i ponAbe2.chr8             C 0 C 0
s rheMac3.chr8              61687828 1 + 150158102 G
i rheMac3.chr8             C 0 I 552
s pseHum1.KB221294            561480 1 -   1479532 G
i pseHum1.KB221294         C 0 C 0
s galGal4.chr27              2946531 1 +   5209285 G
i galGal4.chr27            C 0 C 0
s allMis1.JH734498           1126036 1 +   1323196 G
i allMis1.JH734498         C 0 C 0
e ornAna1.Ultra67           12157043 0 -  12745677 I
e tetNig2.chr10              6379385 0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382 0 -   6649201 I
e hapBur1.JH425491            252157 0 -   1273513 I
e neoBri1.JH422308           3491820 0 -   5414369 I
e araMac1.AOUJ01470298           637 0 -       895 I
e takFla1.AOOT01113665           306 0 +       323 I
e fr3.HE591725                289786 0 -    411779 I
e ficAlb2.chr2             148476508 0 + 157563209 I
e anoCar2.chr1             148577473 4 + 263920458 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214 0 -  25666195 I
e falPer1.KB390952           2753956 0 -  18327016 I
e falChe1.KB397350           1707310 0 -   3649919 I
e macEug2.GL109592            105897 0 -    117391 I
e geoFor1.JH740018           1736802 0 +   2102797 I
e melGal1.chr7              34310641 0 -  38723565 I
e anaPla1.KB742696           1254472 0 -   1270250 I
e amaVit1.AOCU01222764          1324 0 -      1397 I
e apaSpi1.KB929605            579960 0 +   1015623 I
e cheMyd1.KB605988            134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736 1 +    779542 I
e pelSin1.JH224655            130683 0 -    257254 C
e melUnd1.JH556573            751858 2 +  10614383 I
e taeGut2.chr18              2066377 0 -  11201131 I
e macFas5.chr8              58362049 0 + 146850525 C
e chlSab2.chr8              53282486 258 + 139301422 I

a score=-5535.000000
s hg38.chr8_KI270814v1_alt     98724 15 +    141812 ------ACCCTGCCTGTCAG--G
s panTro4.chr8              55001195 15 + 143986469 ------ACCCTGCCTCTCAG--G
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59068159 15 + 153482349 ------ACCCTGCCTGTCAG--G
i ponAbe2.chr8             C 0 C 0
s pseHum1.KB221294            561481 21 -   1479532 GCGAAGAGCGGGGCGGTCAG--G
i pseHum1.KB221294         C 0 C 0
s galGal4.chr27              2946532 23 +   5209285 GGTCACCTCAGAGccggcagcag
i galGal4.chr27            C 0 C 0
s allMis1.JH734498           1126037 21 +   1323196 GCGC--TGGAGGGCGAGGAGGAG
i allMis1.JH734498         C 0 C 0
s pelSin1.JH224655            130683  9 -    257254 ------------GCGGAGAG--G
i pelSin1.JH224655         C 0 C 0
e ornAna1.Ultra67           12157043  0 -  12745677 I
e tetNig2.chr10              6379385  0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382  0 -   6649201 I
e hapBur1.JH425491            252157  0 -   1273513 I
e neoBri1.JH422308           3491820  0 -   5414369 I
e araMac1.AOUJ01470298           637  0 -       895 I
e takFla1.AOOT01113665           306  0 +       323 I
e fr3.HE591725                289786  0 -    411779 I
e ficAlb2.chr2             148476508  0 + 157563209 I
e anoCar2.chr1             148577473  4 + 263920458 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214  0 -  25666195 I
e falPer1.KB390952           2753956  0 -  18327016 I
e falChe1.KB397350           1707310  0 -   3649919 I
e macEug2.GL109592            105897  0 -    117391 I
e geoFor1.JH740018           1736802  0 +   2102797 I
e melGal1.chr7              34310641  0 -  38723565 I
e anaPla1.KB742696           1254472  0 -   1270250 I
e amaVit1.AOCU01222764          1324  0 -      1397 I
e apaSpi1.KB929605            579960  0 +   1015623 I
e cheMyd1.KB605988            134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736  1 +    779542 I
e melUnd1.JH556573            751858  2 +  10614383 I
e taeGut2.chr18              2066377  0 -  11201131 I
e rheMac3.chr8              61687829 552 + 150158102 I
e macFas5.chr8              58362049  0 + 146850525 C
e chlSab2.chr8              53282486 258 + 139301422 I

a score=-129240.000000
s hg38.chr8_KI270814v1_alt     98739 275 +    141812 ------------------------------CGGTCGGC-----CCAATAGCTGCAGGAGGGCGGGAACCGACTGCTGAGCC-----------CCAACCCA-GCG-GCTG-AGCAGTGCCCAACGCTCGTGACCCCATGC-TTGGGGCGCGG----GCCAAGAAA-----------------------------------GAGCCGAACTTATTGTGGGAGGGC--------------------T---------------GAGCACTCGGCCTCCTTCAG---GCCATC----TGG--GACCAGCCATGC--CAGACACCGCCG----------TGGGGTCA--TTTGCAGC--AGCCACCTGCACA-----TGGCGGACAGCCGCAAAGCTGGCAACCCCTG----ACCTTGCAGGC----ATCACCAGCTGCAGGG
s panTro4.chr8              55001210 275 + 143986469 ------------------------------CGTTCGGC-----CCAATAGCTGCAGGAGGGCGGGAAGTGACTGCTGAGCC-----------CCAACCCA-GCG-GCTG-AGCAGTGCCCGATGCTCGTGACCCCATGC-TTGGTGCGCGG----GCCAAGAAA-----------------------------------GGGCCAATCTTATTGTGGGAGGGC--------------------T---------------GAGCACTCGGCCTCCTTCAG---GCCATC----TGG--GACCAGCCATGC--CAGACACTGCCG----------TGGGCTCA--TTTGTAGC--TGCCACCTGCACA-----TGGCGGGCAGCCGCAAAGCTGGCAACCCCTG----ACCTTGCAGGC----ATCACCAGCTGCAGGG
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59068174 271 + 153482349 ------------------------------CTGTCGGC-----CCAATAGCTGCAGGAGGGCGGGAACCGACTGCTGAGCC-----------CCAACCCA-GCG-GCTGAAGCAGTGCCCAACGCCCGTG-----ATGC-TTGGGGCGCGG----GTCAAGAAA-----------------------------------GAGCCGAACTTATTGTGGGAGGGC--------------------T---------------GAGCACTCGGCCTCCTTCAG---GCCATC----TGG--GACCAGCCATGC--CAGACACCGCCG----------TGGGCTCA--TTTGCAGC--TGCCACCTGCACA-----TGGCCGGCAGCCGCAATGCTGGCAACCCCTG----ACCTTGCAGGC----ATCACCAGCTGCAGGG
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8              58362049 262 + 146850525 ------------------------------CGCTTGGC-----CTGGCAGCTAC---AGGGCGGGAACCCGCTGCTCAGTC---------ATCGAATTTAGGCT-GTTG-CACAGTCCTCAGCATTGGCGACCTCGTTC-TCTGGGAGCAG----GGCAAGGAA-----------------------------------GA-------------TGGGAGGGT--------------------G---------------GTACACTCGGAGACCCGAAG---GCCGTC----TAG--GACCAGCCATGC--CAGCCTCCGCCT----------TGGGTTCA--GCTGCAGC--TGTCATCTGCATA-----CGGCGCGCAGTAGTAGTGGTGGCAACTCCCA----ACGCTGCCGGA----GCCACCAGCAGTGCGG
i macFas5.chr8             C 0 T 2669
s pseHum1.KB221294            561502 285 -   1479532 CCGGCCAGGCTGCCGGCGCGGT------AGCTCCAG---------GGCATCTGCTCCAGGTTGACGCCCCGCAGG--------------CAGCGTGGCCG-GGG-GCTG-----TCCCCCACCGCCCGCAGCGGCACCT-TCTCCGAGCCG----CTGGCGTTG-----------------------------------GCGCAGAG-------CAGCAGCGT----------------CAGCC---------------GCTCGCCGGGGCTCTCGCCC----TTGCC----GGGGTCACCGGCCGGGA--GCGGCACCGC--------------GGTTTC--CCCGCAGG--CGAAGATCTCGGC-----GGGGGCGTAGCTGCGGAGG----AGCCCGGGCAGCACCGCGCCGGCCCA-GTGCTCCACCGTGGGC
i pseHum1.KB221294         C 0 C 0
s galGal4.chr27              2946555 279 +   5209285 cagg--aggagcccaGCAGGAT---------CCCAGTC-----CTTGCACCGGTTGCGTTTTGAGAACAACC-----------------CAGCGTGCCCA-AAGCTCTG-----TGCCCTGCCA--CGAGGCTGCAGTTCCCCCCGCGTGG----GTTGCGTGG-----------------------------------GGTCCCTG-------CAGGAGGCT--------------CCCATCC---------------TCTCACAGAAGCGACTGCCCCACATCACA----CGG--CAGCACTCAGAAACACGGCCCCGACC---------CTGGGACTC--CTTAGGGC--CGCAGGTCCCAGC-----TGGCTC------------------TCCCTAACAGGACACCATGGGGCGACGTCACCCCCCAGCAGC
i galGal4.chr27            C 0 C 0
s allMis1.JH734498           1126058 374 +   1323196 CGGG--AG-----CGGGAGGAG------CGCCGCGG-------CCGGTACCTGGGGCAAGTACGGGGCACGCTGA---GTCGTGCACATCTCCCCGCCCT-GGT-GCTG-----CCCCCCACCA--CCCTGCGCCAGTC-CCCCTGCACGGCCCAGTGCCGCGGCGAGTGCAGCAGCACCAGCCCACAGTCTGCAGAAAGTTCAAAG-------CAGCAGCACGTTTTAAGAGGTGGTTCACTCTGGAACCTAATGATGGCGCGCACTGGCTATTACTT---GCTGCCAAATCGG--TGCCACTGGACA--GCGGTGCTGCCAGCA-CGCAGCTGGGGTGCATCCCACGGT--CCCAGGCTCTGGCCCACTGGAGTCCTGCCTACAGTAC----AACCCCCA-AGGACACTGCC-------CTTACCCCCTGCAGA-
i allMis1.JH734498         C 0 C 0
s pelSin1.JH224655            130692 292 -    257254 CAAA--GGGAACCCTCCACTATTCCTATTGCCACTGGCCTTTGTCAGAATGCGCCGCATTTT-AGGCAACGCTGCGGGGCCTCAAACGTCACCTCGCTTA-GGG-----------CCTCAGCCG------GTCTTAATC-CCGCTG----G----CTTGtggag-----------------------------------ggacagggctgggcccagcagaTT---------GGGGTGCTGGCC---------------TGGCGCT----CTCTAGCCT-----TGCC-----GA--CAGCCCTGGGAA---CGACGCAGGCAGCAGAGC-----GGGTCC--CAGGCAGCAGAGCGGGTCCCAGC-----AGGGCGGTGCAGAGGGAGG----AAC------AGG---------------GAAATCTACCAACACC
i pelSin1.JH224655         C 0 C 0
e ornAna1.Ultra67           12157043   0 -  12745677 I
e tetNig2.chr10              6379385   0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382   0 -   6649201 I
e hapBur1.JH425491            252157   0 -   1273513 I
e neoBri1.JH422308           3491820   0 -   5414369 I
e araMac1.AOUJ01470298           637   0 -       895 I
e takFla1.AOOT01113665           306   0 +       323 I
e fr3.HE591725                289786   0 -    411779 I
e ficAlb2.chr2             148476508   0 + 157563209 I
e anoCar2.chr1             148577473   4 + 263920458 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214   0 -  25666195 I
e falPer1.KB390952           2753956   0 -  18327016 I
e falChe1.KB397350           1707310   0 -   3649919 I
e macEug2.GL109592            105897   0 -    117391 I
e geoFor1.JH740018           1736802   0 +   2102797 I
e melGal1.chr7              34310641   0 -  38723565 I
e anaPla1.KB742696           1254472   0 -   1270250 I
e amaVit1.AOCU01222764          1324   0 -      1397 I
e apaSpi1.KB929605            579960   0 +   1015623 I
e cheMyd1.KB605988            134509   0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736   1 +    779542 I
e melUnd1.JH556573            751858   2 +  10614383 I
e taeGut2.chr18              2066377   0 -  11201131 I
e rheMac3.chr8              61687829 552 + 150158102 I
e chlSab2.chr8              53282486 258 + 139301422 I

a score=-48650.000000
s hg38.chr8_KI270814v1_alt     99014 140 +    141812 ------------------ACCGC-AGGGCCAGA--TGCCTTCTAGGCGC----CTAATTCAGGCGGTCGGCCTCG--CAGCTGCAGCAG--GGCTAG-AACTGGCGTTCAGCCCCATTCCTGTGGCTGCTCAAAGCCCAGCA--CCCGCGACCTAGCAATATGGGCG-GGGGG
s panTro4.chr8              55001485 140 + 143986469 ------------------ACCAC-AGGGCCAGA--TACCTTCTAGGCGC----CTAATTCAGGCGGTCAGCCTCG--CAGCTGCAGTAG--GGCTAC-AACTGGCGTTCAGCGCCATTCCTGTGGCTGCTCAAAGCCCAGCA--CCCGCCACCTAACAATATGGGCG-GGGGG
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59068445 139 + 153482349 ------------------ACCAC-AGGGCCAGA--TACCTTCTAGGTGC----CTAATTCAGACGGTCGGCCTCG--CAGCTGTAGTAG--GGCTGG-AACTGGCCTTCAGCCCCATTCCTGTGGCTGTTCAAAGCCGAGCA--CCCGTGACCTAGCAATATGGGC--GGGGG
i ponAbe2.chr8             C 0 C 0
s pseHum1.KB221294            561787 138 -   1479532 --TGCTCCGCGTC---CCCTTTC-TCCGCCGGTGGCTTCTTGCCGGCGA------GGCCGTGGCGAGC-GCCCAGGCGAGCCA--------GCCAGC-CACCGCC---GGGCTCGGTCTCGGACCGGACCAGGTGCCtggc---cctg------agctgcagcagcg-gGCGG
i pseHum1.KB221294         C 0 I 13
s galGal4.chr27              2946834 146 +   5209285 --CGCTCCGTGCCGGGCCAGATC-ACGAGCAGC--CCTCCCCACGGTTC------AGCTGAGCTAAG----CCAGGCGATCCATCTCAG--GACAAC-TGAAAGC---CAACCAGCccccaaacctccccagcagcaTCAC---GCTG---CCCACCAGCCGAAGCGCAGCAG
i galGal4.chr27            C 0 I 13
s allMis1.JH734498           1126432 140 +   1323196 -------CATGCC---CCTGCTC-TCCACCCGT-------CCCAGGGCA------GGAAGGGGGGACCTACCCAGGGCAGCTTTGCAAGATGCCAGTGGGCAAGC---TAACCCTGTCTCTG--CCAATCAGGTGGCCCACA-GCCTGC--CCCACTGGCATATGCT-GGGGG
i allMis1.JH734498         C 0 I 58
s pelSin1.JH224655            130984 125 -    257254 TTTGCTCCAGCCT---CCAGCACTTTTACCAGT--CTCCTTCCCGGCCCTCCTCTTGCTTAGCAGAGA-GCCCTGCGAAGATGTCCGGT--GCCAGA------------------------GTCTAGCACGGGTGTAATGCAGGGCTG----------GCCAAGGTG------
i pelSin1.JH224655         C 0 C 0
e ornAna1.Ultra67           12157043   0 -  12745677 I
e tetNig2.chr10              6379385   0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382   0 -   6649201 I
e hapBur1.JH425491            252157   0 -   1273513 I
e neoBri1.JH422308           3491820   0 -   5414369 I
e araMac1.AOUJ01470298           637   0 -       895 I
e takFla1.AOOT01113665           306   0 +       323 I
e fr3.HE591725                289786   0 -    411779 I
e ficAlb2.chr2             148476508   0 + 157563209 I
e anoCar2.chr1             148577473   4 + 263920458 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214   0 -  25666195 I
e falPer1.KB390952           2753956   0 -  18327016 I
e falChe1.KB397350           1707310   0 -   3649919 I
e macEug2.GL109592            105897   0 -    117391 I
e geoFor1.JH740018           1736802   0 +   2102797 I
e melGal1.chr7              34310641   0 -  38723565 I
e anaPla1.KB742696           1254472   0 -   1270250 I
e amaVit1.AOCU01222764          1324   0 -      1397 I
e apaSpi1.KB929605            579960   0 +   1015623 I
e cheMyd1.KB605988            134509   0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736   1 +    779542 I
e melUnd1.JH556573            751858   2 +  10614383 I
e taeGut2.chr18              2066377   0 -  11201131 I
e rheMac3.chr8              61687829 552 + 150158102 I
e macFas5.chr8              58362311 2669 + 146850525 T
e chlSab2.chr8              53282486 258 + 139301422 I

a score=-1429.000000
s hg38.chr8_KI270814v1_alt     99154 70 +    141812 CCAAG-----AAAGAGCGGACCCTAGGTTGGGGCGCTG-AGCACTCGGCGACCCTCAGGCCATCTGGGTCCAT-----TCC
s panTro4.chr8              55001625 70 + 143986469 CCAAG-----AAAGTGCGGACCCTAGGTTGGGGCACTG-AGCACTCGGCGACCCTCAGGCCATCTGGGTCCAT-----TCC
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59068584 70 + 153482349 CCAAG-----AAAGAGCGGACCCTAGGTTGGGGCGCTG-AGCACTCGGCGACCCTCAGGCCATCTGGGTCCAT-----TCC
i ponAbe2.chr8             C 0 C 0
s pseHum1.KB221294            561938 61 -   1479532 CGGCGG----AGCGGGCACCCTCCACCCA---GCGCAGCAGC-----GCGGCCTC-CAGCGCC--GCGTCCTT-----GCC
i pseHum1.KB221294         I 13 C 0
s galGal4.chr27              2946993 72 +   5209285 CTGCAGCCCCCgctggctgctgcctctcc---GTGCTG-GGC-----TCGGCCCCTCTGCACCCGCCGTCCCCacgcagcc
i galGal4.chr27            I 13 C 0
s pelSin1.JH224655            131109 52 -    257254 CGGCG-----CACGGACAGCACCTGGCC-----TGCTG--------------CCCTTGCCACCAGAAGTCCAG-----GCG
i pelSin1.JH224655         C 0 C 0
e ornAna1.Ultra67           12157043  0 -  12745677 I
e tetNig2.chr10              6379385  0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382  0 -   6649201 I
e hapBur1.JH425491            252157  0 -   1273513 I
e neoBri1.JH422308           3491820  0 -   5414369 I
e araMac1.AOUJ01470298           637  0 -       895 I
e takFla1.AOOT01113665           306  0 +       323 I
e fr3.HE591725                289786  0 -    411779 I
e ficAlb2.chr2             148476508  0 + 157563209 I
e anoCar2.chr1             148577473  4 + 263920458 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214  0 -  25666195 I
e allMis1.JH734498           1126572 58 +   1323196 I
e falPer1.KB390952           2753956  0 -  18327016 I
e falChe1.KB397350           1707310  0 -   3649919 I
e macEug2.GL109592            105897  0 -    117391 I
e geoFor1.JH740018           1736802  0 +   2102797 I
e melGal1.chr7              34310641  0 -  38723565 I
e anaPla1.KB742696           1254472  0 -   1270250 I
e amaVit1.AOCU01222764          1324  0 -      1397 I
e apaSpi1.KB929605            579960  0 +   1015623 I
e cheMyd1.KB605988            134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736  1 +    779542 I
e melUnd1.JH556573            751858  2 +  10614383 I
e taeGut2.chr18              2066377  0 -  11201131 I
e rheMac3.chr8              61687829 552 + 150158102 I
e macFas5.chr8              58362311 2669 + 146850525 T
e chlSab2.chr8              53282486 258 + 139301422 I

a score=-120.000000
s hg38.chr8_KI270814v1_alt     99224 1 +    141812 T
s panTro4.chr8              55001695 1 + 143986469 T
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59068654 1 + 153482349 T
i ponAbe2.chr8             C 0 C 0
s rheMac3.chr8              61688381 1 + 150158102 T
i rheMac3.chr8             I 552 C 0
s chlSab2.chr8              53282744 1 + 139301422 T
i chlSab2.chr8             I 258 C 0
s pseHum1.KB221294            561999 1 -   1479532 C
i pseHum1.KB221294         C 0 I 1
s galGal4.chr27              2947065 1 +   5209285 c
i galGal4.chr27            C 0 I 1
s pelSin1.JH224655            131161 1 -    257254 G
i pelSin1.JH224655         C 0 I 10
e ornAna1.Ultra67           12157043 0 -  12745677 I
e tetNig2.chr10              6379385 0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382 0 -   6649201 I
e hapBur1.JH425491            252157 0 -   1273513 I
e neoBri1.JH422308           3491820 0 -   5414369 I
e araMac1.AOUJ01470298           637 0 -       895 I
e takFla1.AOOT01113665           306 0 +       323 I
e fr3.HE591725                289786 0 -    411779 I
e ficAlb2.chr2             148476508 0 + 157563209 I
e anoCar2.chr1             148577473 4 + 263920458 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214 0 -  25666195 I
e allMis1.JH734498           1126572 58 +   1323196 I
e falPer1.KB390952           2753956 0 -  18327016 I
e falChe1.KB397350           1707310 0 -   3649919 I
e macEug2.GL109592            105897 0 -    117391 I
e geoFor1.JH740018           1736802 0 +   2102797 I
e melGal1.chr7              34310641 0 -  38723565 I
e anaPla1.KB742696           1254472 0 -   1270250 I
e amaVit1.AOCU01222764          1324 0 -      1397 I
e apaSpi1.KB929605            579960 0 +   1015623 I
e cheMyd1.KB605988            134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736 1 +    779542 I
e melUnd1.JH556573            751858 2 +  10614383 I
e taeGut2.chr18              2066377 0 -  11201131 I
e macFas5.chr8              58362311 2669 + 146850525 T

a score=3610.000000
s hg38.chr8_KI270814v1_alt     99225 15 +    141812 GCCAGCCTCTGCCAT
s panTro4.chr8              55001696 15 + 143986469 GCCAGCCTCTGCCAT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59068655 15 + 153482349 GCCAGCCTTTGCCAT
i ponAbe2.chr8             C 0 C 0
s rheMac3.chr8              61688382 15 + 150158102 GCCAGCCTCCGCCTT
i rheMac3.chr8             C 0 C 0
s chlSab2.chr8              53282745 15 + 139301422 GCCAGCCTCCGCCTT
i chlSab2.chr8             C 0 C 0
s pseHum1.KB221294            562001 15 -   1479532 CCCGCTTGCGCTTGC
i pseHum1.KB221294         I 1 I 6
s galGal4.chr27              2947067 15 +   5209285 gcagagcacagccac
i galGal4.chr27            I 1 I 94
s allMis1.JH734498           1126630 11 +   1323196 GCCAGCCACAA----
i allMis1.JH734498         I 58 C 0
s pelSin1.JH224655            131172 11 -    257254 TCCTATTTCAA----
i pelSin1.JH224655         I 10 I 2
e ornAna1.Ultra67           12157043  0 -  12745677 I
e tetNig2.chr10              6379385  0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382  0 -   6649201 I
e hapBur1.JH425491            252157  0 -   1273513 I
e neoBri1.JH422308           3491820  0 -   5414369 I
e araMac1.AOUJ01470298           637  0 -       895 I
e takFla1.AOOT01113665           306  0 +       323 I
e fr3.HE591725                289786  0 -    411779 I
e ficAlb2.chr2             148476508  0 + 157563209 I
e anoCar2.chr1             148577473  4 + 263920458 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214  0 -  25666195 I
e falPer1.KB390952           2753956  0 -  18327016 I
e falChe1.KB397350           1707310  0 -   3649919 I
e macEug2.GL109592            105897  0 -    117391 I
e geoFor1.JH740018           1736802  0 +   2102797 I
e melGal1.chr7              34310641  0 -  38723565 I
e anaPla1.KB742696           1254472  0 -   1270250 I
e amaVit1.AOCU01222764          1324  0 -      1397 I
e apaSpi1.KB929605            579960  0 +   1015623 I
e cheMyd1.KB605988            134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736  1 +    779542 I
e melUnd1.JH556573            751858  2 +  10614383 I
e taeGut2.chr18              2066377  0 -  11201131 I
e macFas5.chr8              58362311 2669 + 146850525 T

a score=2589.000000
s hg38.chr8_KI270814v1_alt     99240 15 +    141812 GGGTTCAGCTGCAGC-----------------
s panTro4.chr8              55001711 15 + 143986469 GGGTTCAGCTGAAGC-----------------
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59068670 15 + 153482349 GGGTTCAGCTGCAGC-----------------
i ponAbe2.chr8             C 0 C 0
s rheMac3.chr8              61688397 15 + 150158102 GGGTTCAGCTGCAGC-----------------
i rheMac3.chr8             C 0 I 304
s chlSab2.chr8              53282760 15 + 139301422 GGGTTTAGCTGCAGC-----------------
i chlSab2.chr8             C 0 C 0
s pseHum1.KB221294            562022 32 -   1479532 GGTCGCCGTTGCGGTGCCACTCGCTCAGGATG
i pseHum1.KB221294         I 6 C 0
s allMis1.JH734498           1126641 22 +   1323196 AGCCCCAGCTG----------CCCCCAAGCAC
i allMis1.JH734498         C 0 C 0
s pelSin1.JH224655            131185 32 -    257254 GCTCACAGTTGCGGCACGAcccgggaaggggc
i pelSin1.JH224655         I 2 C 0
e ornAna1.Ultra67           12157043  0 -  12745677 I
e tetNig2.chr10              6379385  0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382  0 -   6649201 I
e hapBur1.JH425491            252157  0 -   1273513 I
e neoBri1.JH422308           3491820  0 -   5414369 I
e araMac1.AOUJ01470298           637  0 -       895 I
e takFla1.AOOT01113665           306  0 +       323 I
e fr3.HE591725                289786  0 -    411779 I
e ficAlb2.chr2             148476508  0 + 157563209 I
e anoCar2.chr1             148577473  4 + 263920458 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214  0 -  25666195 I
e falPer1.KB390952           2753956  0 -  18327016 I
e falChe1.KB397350           1707310  0 -   3649919 I
e macEug2.GL109592            105897  0 -    117391 I
e galGal4.chr27              2947082 94 +   5209285 I
e geoFor1.JH740018           1736802  0 +   2102797 I
e melGal1.chr7              34310641  0 -  38723565 I
e anaPla1.KB742696           1254472  0 -   1270250 I
e amaVit1.AOCU01222764          1324  0 -      1397 I
e apaSpi1.KB929605            579960  0 +   1015623 I
e cheMyd1.KB605988            134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736  1 +    779542 I
e melUnd1.JH556573            751858  2 +  10614383 I
e taeGut2.chr18              2066377  0 -  11201131 I
e macFas5.chr8              58362311 2669 + 146850525 T

a score=-1038.000000
s hg38.chr8_KI270814v1_alt     99255 18 +    141812 C----------GCCAC-------CTGAATA--TGG-CG
s panTro4.chr8              55001726 18 + 143986469 T----------GCCGC-------CTGAACA--TGG-CG
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59068685 19 + 153482349 T----------GACAC-------CTGAACA--TGGCCG
i ponAbe2.chr8             C 0 C 0
s chlSab2.chr8              53282775 18 + 139301422 T----------GTCAT-------CTGCATA--TGG-CG
i chlSab2.chr8             C 0 I 284
s pseHum1.KB221294            562054 24 -   1479532 C----------GCTCC-CTGTTCTTGATGA--TGC-GG
i pseHum1.KB221294         C 0 I 1
s allMis1.JH734498           1126663 25 +   1323196 T----------GCTCTGGTGCTGCTGGCCA--TGG-GG
i allMis1.JH734498         C 0 I 1
s pelSin1.JH224655            131217 30 -    257254 tggagccGTGAGCTCT-------CTGAACAGCTGC-AG
i pelSin1.JH224655         C 0 C 0
e ornAna1.Ultra67           12157043  0 -  12745677 I
e tetNig2.chr10              6379385  0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382  0 -   6649201 I
e hapBur1.JH425491            252157  0 -   1273513 I
e neoBri1.JH422308           3491820  0 -   5414369 I
e araMac1.AOUJ01470298           637  0 -       895 I
e takFla1.AOOT01113665           306  0 +       323 I
e fr3.HE591725                289786  0 -    411779 I
e ficAlb2.chr2             148476508  0 + 157563209 I
e anoCar2.chr1             148577473  4 + 263920458 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214  0 -  25666195 I
e falPer1.KB390952           2753956  0 -  18327016 I
e falChe1.KB397350           1707310  0 -   3649919 I
e macEug2.GL109592            105897  0 -    117391 I
e galGal4.chr27              2947082 94 +   5209285 I
e geoFor1.JH740018           1736802  0 +   2102797 I
e melGal1.chr7              34310641  0 -  38723565 I
e anaPla1.KB742696           1254472  0 -   1270250 I
e amaVit1.AOCU01222764          1324  0 -      1397 I
e apaSpi1.KB929605            579960  0 +   1015623 I
e cheMyd1.KB605988            134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736  1 +    779542 I
e melUnd1.JH556573            751858  2 +  10614383 I
e taeGut2.chr18              2066377  0 -  11201131 I
e rheMac3.chr8              61688412 304 + 150158102 I
e macFas5.chr8              58362311 2669 + 146850525 T

a score=133.000000
s hg38.chr8_KI270814v1_alt     99273 57 +    141812 GGGTCAGCAACTGG-----GGCAACCCGGGCTATTTC--CGTGACTACTATCGCGGTCCACAGG
s panTro4.chr8              55001744 57 + 143986469 GGGTCAGCAATTGG-----GGCAACCCGGGCTATTTC--CGTGACTACTATCGCGGTCCACAGG
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59068704 57 + 153482349 GGGTCAGCAACCGG-----GGCAACCCGGACTGTTTC--CTTGACTGCTATCGCGGTCCACGGG
i ponAbe2.chr8             C 0 C 0
s pseHum1.KB221294            562079 32 -   1479532 AGATCTGGGGCTGC-----GACACCCCGAAGCGCTTG---------------------------
i pseHum1.KB221294         I 1 C 0
s allMis1.JH734498           1126689 32 +   1323196 TCATCAGGGTCGGG-----GTCACGCTGAACTGGGCA---------------------------
i allMis1.JH734498         I 1 I 3
s pelSin1.JH224655            131247 39 -    257254 TGATCccgggcggctgccaggcaaccgGCGAGAGGCAAG-------------------------
i pelSin1.JH224655         C 0 C 0
e ornAna1.Ultra67           12157043  0 -  12745677 I
e tetNig2.chr10              6379385  0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382  0 -   6649201 I
e hapBur1.JH425491            252157  0 -   1273513 I
e neoBri1.JH422308           3491820  0 -   5414369 I
e araMac1.AOUJ01470298           637  0 -       895 I
e takFla1.AOOT01113665           306  0 +       323 I
e fr3.HE591725                289786  0 -    411779 I
e ficAlb2.chr2             148476508  0 + 157563209 I
e anoCar2.chr1             148577473  4 + 263920458 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214  0 -  25666195 I
e falPer1.KB390952           2753956  0 -  18327016 I
e falChe1.KB397350           1707310  0 -   3649919 I
e macEug2.GL109592            105897  0 -    117391 I
e galGal4.chr27              2947082 94 +   5209285 I
e geoFor1.JH740018           1736802  0 +   2102797 I
e melGal1.chr7              34310641  0 -  38723565 I
e anaPla1.KB742696           1254472  0 -   1270250 I
e amaVit1.AOCU01222764          1324  0 -      1397 I
e apaSpi1.KB929605            579960  0 +   1015623 I
e cheMyd1.KB605988            134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736  1 +    779542 I
e melUnd1.JH556573            751858  2 +  10614383 I
e taeGut2.chr18              2066377  0 -  11201131 I
e rheMac3.chr8              61688412 304 + 150158102 I
e macFas5.chr8              58362311 2669 + 146850525 T
e chlSab2.chr8              53282793 284 + 139301422 I

a score=-28284.000000
s hg38.chr8_KI270814v1_alt     99330 110 +    141812 GCCAGACGCTGCCGTGGCG-CCT---------------AAGTC--ACGCAGTTGCAA---------CCGCAGCTGCAG------GAGGGTGGAAACCAGTGCCCAGTCCCATCCTGGTGGCTGCAGAGTGCCC-------------------AGCTCCAG-------------GG
s panTro4.chr8              55001801 110 + 143986469 GCCAGACGCTGCCGTGGCG-CCT---------------AAGTC--ACGCAGTTGCAA---------CCACAGCTGCAG------GAAGGTGGAAAGCAGTGCCCAGTCCCATCCTGGTGGCTGCAGAGTGCCC-------------------AGCTCCAG-------------GG
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59068761 110 + 153482349 GCCAGACGCTGCGGTGGCG-CCT---------------AAGTC--ACGCAGTTGCAC---------CCGCAGCTGCAG------GAAGGTGGAAACCAGTGCCCAGTCCCATCCTGGTGGCTGCAGAGTGCCC-------------------AGCTCCAG-------------GG
i ponAbe2.chr8             C 0 C 0
s pseHum1.KB221294            562111 124 -   1479532 GCCAGCTCGCTCTGCGACA-CCTTGGGAccctccagc-atctc--cagcacgCGCACCTTCTCGGTCAGCGACAGCTC---------------------CTTCCGCTCCTTCCGTGGCGCT------GCCGTC--------------------GCTCCCTCCACCGCgcccgggg
i pseHum1.KB221294         C 0 C 0
s galGal4.chr27              2947176 119 +   5209285 ggctgcac-----gCGGC--TCTTGGCGGACGCGGGCGATTTCGGCGGCGTGCGAAC---------CACTGCCACCTT---------------------CTTGGGCTCCCTGGCTGGTGGG------GTGGGCAGAGAAGGAGTGCGGGAACGGCTGCCT-------------GG
i galGal4.chr27            I 94 C 0
s allMis1.JH734498           1126724  89 +   1323196 GCCAGGGC----CGTGTCC-CCTCTGCCCAGGTCA---AGCTC--AGCCACAGCCAC---------AGCCGGCAGCCC---------------------CTTCCCCTGCT------GGGCC------ATGGTC---------------------CTCCAG-------------GG
i allMis1.JH734498         I 3 C 0
s pelSin1.JH224655            131286 118 -    257254 GCCGGGAG-CCACGAGCCCTTCtctgtgttttt-----atttc--aaagcctCCGAC---------CCCAGACAACACTggagggaggctagtccccagccccgcctctttctctgcagcc------ccaccc---------------------ctttca-------------gg
i pelSin1.JH224655         C 0 I 2045
e ornAna1.Ultra67           12157043   0 -  12745677 I
e tetNig2.chr10              6379385   0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382   0 -   6649201 I
e hapBur1.JH425491            252157   0 -   1273513 I
e neoBri1.JH422308           3491820   0 -   5414369 I
e araMac1.AOUJ01470298           637   0 -       895 I
e takFla1.AOOT01113665           306   0 +       323 I
e fr3.HE591725                289786   0 -    411779 I
e ficAlb2.chr2             148476508   0 + 157563209 I
e anoCar2.chr1             148577473   4 + 263920458 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214   0 -  25666195 I
e falPer1.KB390952           2753956   0 -  18327016 I
e falChe1.KB397350           1707310   0 -   3649919 I
e macEug2.GL109592            105897   0 -    117391 I
e geoFor1.JH740018           1736802   0 +   2102797 I
e melGal1.chr7              34310641   0 -  38723565 I
e anaPla1.KB742696           1254472   0 -   1270250 I
e amaVit1.AOCU01222764          1324   0 -      1397 I
e apaSpi1.KB929605            579960   0 +   1015623 I
e cheMyd1.KB605988            134509   0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736   1 +    779542 I
e melUnd1.JH556573            751858   2 +  10614383 I
e taeGut2.chr18              2066377   0 -  11201131 I
e rheMac3.chr8              61688412 304 + 150158102 I
e macFas5.chr8              58362311 2669 + 146850525 T
e chlSab2.chr8              53282793 284 + 139301422 I

a score=10025.000000
s hg38.chr8_KI270814v1_alt     99440 101 +    141812 ACCCCCAACTTTGGGCGCGGGTCGAGCAGGAGCAGT----------GGACTGGGGCTGCGCAGTCACCTGGGGCCTGGGGCAGACCGCACCATGAGC---------TCAGTTTGGTGGTC
s panTro4.chr8              55001911 101 + 143986469 ACCCCCAACTTTGGGTGCGGGTCGAGCAGGAGCAGT----------GGACTGGGGCTGCTCAGTCACTTGGGGCCTGGGGCAGACCGCACCGTGAGC---------TCAGTTTTGTGGTG
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59068871 101 + 153482349 ACCCCCAACTTTGGGCGCGGGTCGAGCAGGAGCAGT----------GGACTGGGGCTGCGCAGTCACCTGGGGCCTGGGGCAGAACGCACCGTGAGC---------TCAGTTTCATGGTG
i ponAbe2.chr8             C 0 C 0
s pseHum1.KB221294            562235  82 -   1479532 agcgcccggtgcaggggcccggccggtgggggctgcccgtggcccc---------cagc----ccccccGG----------------TTCGGCGAGG---------CCTCTCCCGCAGCG
i pseHum1.KB221294         C 0 C 0
s galGal4.chr27              2947295  96 +   5209285 AGTCCCGGG----GGAGCCGGGACTGCTGTAACCGCTTCTGTCTCCAGACTTGGGCTGC----TCACCTGGAG---ACGGCAGA---CGCGGAGAGG----------TGAGCGCAGGGTG
i galGal4.chr27            C 0 C 0
s allMis1.JH734498           1126813 103 +   1323196 ACCACTAGCTTGCAGCGCGCACCTAGCAGGAGCAGCCC--AACCCAGGACTG---CGGC----CCACGCAG-----GGGGAAGC---AGCAGCGGGGCCACACCTGCCTACACCAGGGTG
i allMis1.JH734498         C 0 C 0
e ornAna1.Ultra67           12157043   0 -  12745677 I
e tetNig2.chr10              6379385   0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382   0 -   6649201 I
e hapBur1.JH425491            252157   0 -   1273513 I
e neoBri1.JH422308           3491820   0 -   5414369 I
e araMac1.AOUJ01470298           637   0 -       895 I
e takFla1.AOOT01113665           306   0 +       323 I
e fr3.HE591725                289786   0 -    411779 I
e ficAlb2.chr2             148476508   0 + 157563209 I
e anoCar2.chr1             148577473   4 + 263920458 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214   0 -  25666195 I
e falPer1.KB390952           2753956   0 -  18327016 I
e falChe1.KB397350           1707310   0 -   3649919 I
e macEug2.GL109592            105897   0 -    117391 I
e geoFor1.JH740018           1736802   0 +   2102797 I
e melGal1.chr7              34310641   0 -  38723565 I
e anaPla1.KB742696           1254472   0 -   1270250 I
e amaVit1.AOCU01222764          1324   0 -      1397 I
e apaSpi1.KB929605            579960   0 +   1015623 I
e cheMyd1.KB605988            134509   0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736   1 +    779542 I
e pelSin1.JH224655            131404 2045 -    257254 I
e melUnd1.JH556573            751858   2 +  10614383 I
e taeGut2.chr18              2066377   0 -  11201131 I
e rheMac3.chr8              61688412 304 + 150158102 I
e macFas5.chr8              58362311 2669 + 146850525 T
e chlSab2.chr8              53282793 284 + 139301422 I

a score=28722.000000
s hg38.chr8_KI270814v1_alt     99541 45 +    141812 GGCGCCTCA--GCTGCAGCTGCCACCTGCATGCT--GTGCCCA-------------CGAGAG
s panTro4.chr8              55002012 45 + 143986469 GGCGCCTCA--GCTGCAGCTGCCACCTGCATGCT--GTGCCCA-------------TGAGAG
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59068972 45 + 153482349 GGCGCCTCA--GCTGCAGCTGCCACCTGCATGCT--GTGCCCA-------------CGAGAT
i ponAbe2.chr8             C 0 C 0
s rheMac3.chr8              61688716 45 + 150158102 GGCGCCTCA--GCAGCAGCTGCCACCTGCATGCG--GTGCCCG-------------CGAGTG
i rheMac3.chr8             I 304 C 0
s chlSab2.chr8              53283077 45 + 139301422 GGCGCCTCA--GCAGCAGCTGCCACCTGCATGCG--GTGCCCG-------------CGAGTG
i chlSab2.chr8             I 284 C 0
s pseHum1.KB221294            562317 40 -   1479532 ---GCCGCA--GGCGTAGCCGA--GCTCCGTGCC--GTGCCCC-------------AGCCGG
i pseHum1.KB221294         C 0 C 0
s galGal4.chr27              2947391 41 +   5209285 ---AGCGCATCGGCACAGCaac--cctgcctgcc---tgcctg-------------cgtgGG
i galGal4.chr27            C 0 n 0
s allMis1.JH734498           1126916 48 +   1323196 -----------GTCAGAGCAG---GCCCCCAGCCAGGGGCCTGGATTCACCATGGACACGGG
i allMis1.JH734498         C 0 I 2
e ornAna1.Ultra67           12157043  0 -  12745677 I
e tetNig2.chr10              6379385  0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382  0 -   6649201 I
e hapBur1.JH425491            252157  0 -   1273513 I
e neoBri1.JH422308           3491820  0 -   5414369 I
e araMac1.AOUJ01470298           637  0 -       895 I
e takFla1.AOOT01113665           306  0 +       323 I
e fr3.HE591725                289786  0 -    411779 I
e ficAlb2.chr2             148476508  0 + 157563209 I
e anoCar2.chr1             148577473  4 + 263920458 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214  0 -  25666195 I
e falPer1.KB390952           2753956  0 -  18327016 I
e falChe1.KB397350           1707310  0 -   3649919 I
e macEug2.GL109592            105897  0 -    117391 I
e geoFor1.JH740018           1736802  0 +   2102797 I
e melGal1.chr7              34310641  0 -  38723565 I
e anaPla1.KB742696           1254472  0 -   1270250 I
e amaVit1.AOCU01222764          1324  0 -      1397 I
e apaSpi1.KB929605            579960  0 +   1015623 I
e cheMyd1.KB605988            134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736  1 +    779542 I
e pelSin1.JH224655            131404 2045 -    257254 I
e melUnd1.JH556573            751858  2 +  10614383 I
e taeGut2.chr18              2066377  0 -  11201131 I
e macFas5.chr8              58362311 2669 + 146850525 T

a score=16509.000000
s hg38.chr8_KI270814v1_alt     99586 23 +    141812 CGCGACTC--AGGGCGGTTTCTG-----------GC
s panTro4.chr8              55002057 23 + 143986469 CGCGACTC--AGGGCAGTTTCTG-----------GC
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59069017 23 + 153482349 CGCGACTC--AGGACGATTTCTG-----------GC
i ponAbe2.chr8             C 0 C 0
s rheMac3.chr8              61688761 23 + 150158102 CGCGGCTC--AGGGCGGTTTCTG-----------GC
i rheMac3.chr8             C 0 C 0
s chlSab2.chr8              53283122 23 + 139301422 CGCGGCTC--AGGGCGGTTTCTG-----------GC
i chlSab2.chr8             C 0 C 0
s pseHum1.KB221294            562357 31 -   1479532 TGCCGCACCAGGTCCGGCTTCTG-----CCCCATGC
i pseHum1.KB221294         C 0 I 6
s allMis1.JH734498           1126966 26 +   1323196 ----------AGGGAGTCGCCTGGGAGACTCCAGGC
i allMis1.JH734498         I 2 n 2
e ornAna1.Ultra67           12157043  0 -  12745677 I
e tetNig2.chr10              6379385  0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382  0 -   6649201 I
e hapBur1.JH425491            252157  0 -   1273513 I
e neoBri1.JH422308           3491820  0 -   5414369 I
e araMac1.AOUJ01470298           637  0 -       895 I
e takFla1.AOOT01113665           306  0 +       323 I
e fr3.HE591725                289786  0 -    411779 I
e ficAlb2.chr2             148476508  0 + 157563209 I
e anoCar2.chr1             148577473  4 + 263920458 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214  0 -  25666195 I
e falPer1.KB390952           2753956  0 -  18327016 I
e falChe1.KB397350           1707310  0 -   3649919 I
e macEug2.GL109592            105897  0 -    117391 I
e galGal4.chr27              2947432  0 +   5209285 I
e geoFor1.JH740018           1736802  0 +   2102797 I
e melGal1.chr7              34310641  0 -  38723565 I
e anaPla1.KB742696           1254472  0 -   1270250 I
e amaVit1.AOCU01222764          1324  0 -      1397 I
e apaSpi1.KB929605            579960  0 +   1015623 I
e cheMyd1.KB605988            134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736  1 +    779542 I
e pelSin1.JH224655            131404 2045 -    257254 I
e melUnd1.JH556573            751858  2 +  10614383 I
e taeGut2.chr18              2066377  0 -  11201131 I
e macFas5.chr8              58362311 2669 + 146850525 T

a score=65915.000000
s hg38.chr8_KI270814v1_alt     99609 173 +    141812 CACGCGCAGTTTGTGGCCACGCGCGGGGCCATTACCTTCCGAGGTGCCAGTGCGCGCTGGGGCCCAATGGCTCTGCTCCG-----TATATTT-CT---TCTCCGAGAGTTTGGAGACGTCCCTC---------TCAGAGAAGCTGGAGGG-------TCCCTGTCTGAGGTCTGG------GCCAGACCGTCTTGCTTTATGGT
s panTro4.chr8              55002080 173 + 143986469 CACGCGCAGTTTGCTGCCACACGCGGGGCCATTACCTTCCGAGGTGCCAGTGCGCGCTGGGGCTCAATGGCTCTGCTCTG-----TATATTT-CT---TCTCCGAGAGGTTTGAGACGTCCCTC---------TCAGAGAAGCTGGAGGG-------TCCCTGTCTGAGGTCTGG------GCCAGACCGTCTTGTTTTCTGGT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59069040 173 + 153482349 CACGGGCAGTTTGTGGCCACGCGCGGGGCCGTTACCTTCTGAGGTGCCAGTGCGCGCTGGGGCCCAATGGCTCTGCTCCG-----TATATTT-CT---TCTCCGAGAGGTTGGAGACGTCCCTC---------TCAGAGAAGTTGGAGGG-------TCCCTGTCTGAGGTCTGG------GCCAGACCGTCTTGCTTTCCGGT
i ponAbe2.chr8             C 0 C 0
s rheMac3.chr8              61688784 158 + 150158102 CAGG-----------------CGTGAGGCCGTTGCCTTCTGAGGTGCCCATGGGCGCTGGGGCCCAACGACTCTGCTCCG-----CATATTA-CTTACTCTCCCAGAGGTTGGAGACGTCCTTG---------TCCTAG-GGTGGGAGGG-------TCCCTGTCTGAGGTCTGG------GCCAGACCACCTTGCTTTCTGGT
i rheMac3.chr8             C 0 C 0
s chlSab2.chr8              53283145 158 + 139301422 CAAG-----------------TGTGAGGCCGTTGCCTTCCGAGGTGCCCATGGGCGCTGGGGCCCAACGGCTCTGCTCCG-----CATATTA-CTTACTCTCCCAGAGGTTGGAGACGTCCTTG---------TCCTAG-GGTGGGAGGG-------TCCCTGTCTGAGGTCTGG------GCCAGACCACCTTGCTTTCTGGT
i chlSab2.chr8             C 0 C 0
s pseHum1.KB221294            562394 180 -   1479532 ----CGCACTCGGCA--CAATCCAGCGGCCGCTCCCCGGGCCGGCAGCGGCGGCTCTCGAAGGCGGGGGGTGCGGCGATGAGCCCCCCGTTACCG---GCACCGGGA--TTCGG------CTCCGGTTCGAGGACGCCGCAGTAGCTGCAGCCCCGTTCCCGCAGCGGGACGAGGAAGTCGGCGGGGCCGGTGTGGC-------
i pseHum1.KB221294         I 6 C 0
s allMis1.JH739658             37576 132 -    691381 ----TGGATTTGGC-------CTTGGAGCCTTCCTC--------CACCAGCGG-----GATGACGGTCTTCTCTGCCACG-----TCCGT---CA---GCACCGAGAAGGTGGG------CTCC---------ACAATGAAGTCGATGAA-------CCCTGGAGTGGGGTGGAG--------GGGGGCATTAGAGC-------
i allMis1.JH739658         n 2 C 0
e ornAna1.Ultra67           12157043   0 -  12745677 I
e tetNig2.chr10              6379385   0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382   0 -   6649201 I
e hapBur1.JH425491            252157   0 -   1273513 I
e neoBri1.JH422308           3491820   0 -   5414369 I
e araMac1.AOUJ01470298           637   0 -       895 I
e takFla1.AOOT01113665           306   0 +       323 I
e fr3.HE591725                289786   0 -    411779 I
e ficAlb2.chr2             148476508   0 + 157563209 I
e anoCar2.chr1             148577473   4 + 263920458 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214   0 -  25666195 I
e falPer1.KB390952           2753956   0 -  18327016 I
e falChe1.KB397350           1707310   0 -   3649919 I
e macEug2.GL109592            105897   0 -    117391 I
e galGal4.chr27              2947432   0 +   5209285 I
e geoFor1.JH740018           1736802   0 +   2102797 I
e melGal1.chr7              34310641   0 -  38723565 I
e anaPla1.KB742696           1254472   0 -   1270250 I
e amaVit1.AOCU01222764          1324   0 -      1397 I
e apaSpi1.KB929605            579960   0 +   1015623 I
e cheMyd1.KB605988            134509   0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736   1 +    779542 I
e pelSin1.JH224655            131404 2045 -    257254 I
e melUnd1.JH556573            751858   2 +  10614383 I
e taeGut2.chr18              2066377   0 -  11201131 I
e macFas5.chr8              58362311 2669 + 146850525 T

a score=25608.000000
s hg38.chr8_KI270814v1_alt     99782 31 +    141812 GCTGGTCAGGGTGGGGGCTGGG----CGG-----------CGGGAA
s panTro4.chr8              55002253 31 + 143986469 GCTGGTCAGGGTGGGGGCTGGG----CGG-----------GGGGAA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59069213 31 + 153482349 GCTGGTCAGGGTGGGGGCTGGG----CGG-----------GGGGAA
i ponAbe2.chr8             C 0 C 0
s rheMac3.chr8              61688942 42 + 150158102 GCTGGGCCGGGTGGGGGCTGGG----CGGGGCCTGGGCTAGGGGAA
i rheMac3.chr8             C 0 C 0
s chlSab2.chr8              53283303 42 + 139301422 GCTGGGCCGGGTGGGGGCTGGG----CGGGGCCTGGGCTGGGGGAA
i chlSab2.chr8             C 0 C 0
s pseHum1.KB221294            562574 28 -   1479532 ---GAGCCgggggggAGCGGGC----CGG-----------TGGGGA
i pseHum1.KB221294         C 0 n 0
s allMis1.JH739658             37708 29 -    691381 TCAGTGCCACGGGGGAGGAGGC------A-----------TGGGCA
i allMis1.JH739658         C 0 I 6
s pelSin1.JH224655            133449 35 -    257254 GCTGGGCAGAAGGGGCCGGAGCCGTGCGG-----------CGGGAG
i pelSin1.JH224655         I 2045 I 3
e ornAna1.Ultra67           12157043  0 -  12745677 I
e tetNig2.chr10              6379385  0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382  0 -   6649201 I
e hapBur1.JH425491            252157  0 -   1273513 I
e neoBri1.JH422308           3491820  0 -   5414369 I
e araMac1.AOUJ01470298           637  0 -       895 I
e takFla1.AOOT01113665           306  0 +       323 I
e fr3.HE591725                289786  0 -    411779 I
e ficAlb2.chr2             148476508  0 + 157563209 I
e anoCar2.chr1             148577473  4 + 263920458 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214  0 -  25666195 I
e falPer1.KB390952           2753956  0 -  18327016 I
e falChe1.KB397350           1707310  0 -   3649919 I
e macEug2.GL109592            105897  0 -    117391 I
e galGal4.chr27              2947432  0 +   5209285 I
e geoFor1.JH740018           1736802  0 +   2102797 I
e melGal1.chr7              34310641  0 -  38723565 I
e anaPla1.KB742696           1254472  0 -   1270250 I
e amaVit1.AOCU01222764          1324  0 -      1397 I
e apaSpi1.KB929605            579960  0 +   1015623 I
e cheMyd1.KB605988            134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736  1 +    779542 I
e melUnd1.JH556573            751858  2 +  10614383 I
e taeGut2.chr18              2066377  0 -  11201131 I
e macFas5.chr8              58362311 2669 + 146850525 T

a score=41483.000000
s hg38.chr8_KI270814v1_alt     99813 79 +    141812 GGGCGAG-----GGCTAGTTGTGGCGTCTCTGAAGCCGATAGCCGGGCCATGAA--------GAAGATCTTGGCTGTGGAGAGCCAGAAGGG
s panTro4.chr8              55002284 79 + 143986469 GGGCGAG-----GGCTAGTTGTGGCGTCTCTGAAGCCGATAGCCAGGCCATGAA--------GAAGATCTTGGCTGTGGAGAGCCAGAAGGG
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59069244 79 + 153482349 GGGCCAG-----GGCTAGTTGTGGCGTCTCTGAAGCCGATAGCCGGGCCTTGAA--------GAAGATCTTAGCTGTGGAGAGCCAGAATGG
i ponAbe2.chr8             C 0 C 0
s rheMac3.chr8              61688984 72 + 150158102 GGGCGAG-----GGCGAGTTGTGGCGTCTCTGAAGCCG-------GGCCATGAA--------GAAGATCGTGGCTGTGGAGAGCCAGAAGGG
i rheMac3.chr8             C 0 C 0
s chlSab2.chr8              53283345 69 + 139301422 GGGCGAG-----GGCGAATTGTGGCGTCTCTGAAGCCG-------GGCCAT-----------GAAGATCGTGGCTGTGGAGAGCCAGAAGGG
i chlSab2.chr8             C 0 C 0
s allMis1.JH739658             37743 68 -    691381 GGGCAGC-----GACTCACCAATCTGGGACTG-AGCCACTAGCGTGGACGTGCG-----GTCACAGAGCGGAGAGAAGG-------------
i allMis1.JH739658         I 6 C 0
s pelSin1.JH224655            133487 91 -    257254 AGGCGGCTGTTTGACTTTCAGAGCTGTGCCCG-CGCTCCCGCCAGGGGGCTGCGTCCAAGCCAAACAGCCGGCACATGGAGAACCAGCGAGG
i pelSin1.JH224655         I 3 n 3
e ornAna1.Ultra67           12157043  0 -  12745677 I
e tetNig2.chr10              6379385  0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382  0 -   6649201 I
e hapBur1.JH425491            252157  0 -   1273513 I
e neoBri1.JH422308           3491820  0 -   5414369 I
e araMac1.AOUJ01470298           637  0 -       895 I
e takFla1.AOOT01113665           306  0 +       323 I
e fr3.HE591725                289786  0 -    411779 I
e ficAlb2.chr2             148476508  0 + 157563209 I
e anoCar2.chr1             148577473  4 + 263920458 I
e pseHum1.KB221294            562602  0 -   1479532 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214  0 -  25666195 I
e falPer1.KB390952           2753956  0 -  18327016 I
e falChe1.KB397350           1707310  0 -   3649919 I
e macEug2.GL109592            105897  0 -    117391 I
e galGal4.chr27              2947432  0 +   5209285 I
e geoFor1.JH740018           1736802  0 +   2102797 I
e melGal1.chr7              34310641  0 -  38723565 I
e anaPla1.KB742696           1254472  0 -   1270250 I
e amaVit1.AOCU01222764          1324  0 -      1397 I
e apaSpi1.KB929605            579960  0 +   1015623 I
e cheMyd1.KB605988            134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736  1 +    779542 I
e melUnd1.JH556573            751858  2 +  10614383 I
e taeGut2.chr18              2066377  0 -  11201131 I
e macFas5.chr8              58362311 2669 + 146850525 T

a score=95403.000000
s hg38.chr8_KI270814v1_alt     99892 118 +    141812 CCAGGTGCCCCTGAGCTCCTGGAATAACCGCATCTTTTCTGACC---CCTGGTACCAGACCCCAGATGAGGATCT--GGAATATCCACAAAGCTGCGTCCAGGGGAACGCGTGGAAGCTGCAG
s panTro4.chr8              55002363 118 + 143986469 CCAGGTGCCCCTGAGCTCCTGGAATAACCGCATCTTCTCTGACC---CCTGGTACCAGACCCCAGATGAGGATCT--GGAATATCCACAAAGCTGCGTCCAGGGGAACGCGTGGAAGCTGCAG
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59069323 121 + 153482349 CCAGGTGCCCCTGAGCTCCTGGAATAACCGCATATTCTCTGACCTCATCTGGTACCAGACCCCAGATGAGGATCT--GGAAGATCCACAAAGCTGCGTCCAGGGAAACGCGTGGAAGCTGCAG
i ponAbe2.chr8             C 0 C 0
s rheMac3.chr8              61689056 120 + 150158102 CCAGGTGTGCCTGAGCTCCTGGAGTAACCACATCTTCTCTGACC---CCTGGTACCAGACCCCAGATGAGGATGTTGGGATGATCTACAAAGCTGCGTCCAGGGAAACGCGTGGAAGCTGCAG
i rheMac3.chr8             C 0 C 0
s chlSab2.chr8              53283414 120 + 139301422 CCAGGTGTGCCTGAGCTCTTGGGGTAACCACATCTTCTCTGACC---CCTGGTACCAGACCCCAGATGAGGATGTCGGGATGATCTACAAAGCTGCGTCCAGGGAAACACGTGGAAGCTGCAG
i chlSab2.chr8             C 0 C 0
s allMis1.JH739658             37811  97 -    691381 GCAGCCCCAGCTGGGCTTC--------------CTTGTC---CC---CCTGGCA----ACACAAGGAGACGGCGA--TGAGCACGCAGACGCTGGAGCCCGGGGGAACCCCTGCCACCAGCAG
i allMis1.JH739658         C 0 I 134
e ornAna1.Ultra67           12157043   0 -  12745677 I
e tetNig2.chr10              6379385   0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382   0 -   6649201 I
e hapBur1.JH425491            252157   0 -   1273513 I
e neoBri1.JH422308           3491820   0 -   5414369 I
e araMac1.AOUJ01470298           637   0 -       895 I
e takFla1.AOOT01113665           306   0 +       323 I
e fr3.HE591725                289786   0 -    411779 I
e ficAlb2.chr2             148476508   0 + 157563209 I
e anoCar2.chr1             148577473   4 + 263920458 I
e pseHum1.KB221294            562602   0 -   1479532 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214   0 -  25666195 I
e falPer1.KB390952           2753956   0 -  18327016 I
e falChe1.KB397350           1707310   0 -   3649919 I
e macEug2.GL109592            105897   0 -    117391 I
e galGal4.chr27              2947432   0 +   5209285 I
e geoFor1.JH740018           1736802   0 +   2102797 I
e melGal1.chr7              34310641   0 -  38723565 I
e anaPla1.KB742696           1254472   0 -   1270250 I
e amaVit1.AOCU01222764          1324   0 -      1397 I
e apaSpi1.KB929605            579960   0 +   1015623 I
e cheMyd1.KB605988            134509   0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736   1 +    779542 I
e pelSin1.JH224655            133578   3 -    257254 I
e melUnd1.JH556573            751858   2 +  10614383 I
e taeGut2.chr18              2066377   0 -  11201131 I
e macFas5.chr8              58362311 2669 + 146850525 T

a score=67978.000000
s hg38.chr8_KI270814v1_alt    100010 93 +    141812 CGGAGCCTCCTGCTCAAGAGAAAAGGCCAGTCTGAAACCTACAAGAAGAACATGTGTCGGGAACTGCGGGCTGTGGGCTGGGGGCTACTGGAG
s panTro4.chr8              55002481 93 + 143986469 CGGAGCCTCCTGCTCAAGAGAAAAGGCCAGTCTGAAACCTACAAGAAGAACATGTGTCGGGAACTGCGGGCTGTGGGCTGGGGGCTATTGGAG
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59069444 93 + 153482349 CGGAGCCTCCTGCTCAAGAGAAAAGACCAGTCTGAAACCTACAAGAAGAACAGGTGTCGGGAACTGCGGGCTGTGGGCTGGGGTCTACTGGAG
i ponAbe2.chr8             C 0 C 0
s rheMac3.chr8              61689176 83 + 150158102 CGGAGCTTCCTGCTCAAGAGAAAAGACCAGTCTGAAACCTGC---AAGAACAGATGTCAGGAA-------CTGCGGGCTGGGGACTGAGGGAG
i rheMac3.chr8             C 0 C 0
s chlSab2.chr8              53283534 90 + 139301422 CGGAGCCTCCTGCTCAAGAGAAAAGACCAGTCTGAAACCTTC---AAGAACAGGTGTCAGGAActgcggcctgcgggctggggactgagggag
i chlSab2.chr8             C 0 C 0
e ornAna1.Ultra67           12157043  0 -  12745677 I
e tetNig2.chr10              6379385  0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382  0 -   6649201 I
e hapBur1.JH425491            252157  0 -   1273513 I
e neoBri1.JH422308           3491820  0 -   5414369 I
e araMac1.AOUJ01470298           637  0 -       895 I
e takFla1.AOOT01113665           306  0 +       323 I
e fr3.HE591725                289786  0 -    411779 I
e ficAlb2.chr2             148476508  0 + 157563209 I
e anoCar2.chr1             148577473  4 + 263920458 I
e pseHum1.KB221294            562602  0 -   1479532 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214  0 -  25666195 I
e allMis1.JH739658             37908 134 -    691381 I
e falPer1.KB390952           2753956  0 -  18327016 I
e falChe1.KB397350           1707310  0 -   3649919 I
e macEug2.GL109592            105897  0 -    117391 I
e galGal4.chr27              2947432  0 +   5209285 I
e geoFor1.JH740018           1736802  0 +   2102797 I
e melGal1.chr7              34310641  0 -  38723565 I
e anaPla1.KB742696           1254472  0 -   1270250 I
e amaVit1.AOCU01222764          1324  0 -      1397 I
e apaSpi1.KB929605            579960  0 +   1015623 I
e cheMyd1.KB605988            134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736  1 +    779542 I
e pelSin1.JH224655            133578  3 -    257254 I
e melUnd1.JH556573            751858  2 +  10614383 I
e taeGut2.chr18              2066377  0 -  11201131 I
e macFas5.chr8              58362311 2669 + 146850525 T

a score=68334.000000
s hg38.chr8_KI270814v1_alt    100103 73 +    141812 GAGGTGGGCAGGTGGGGAGAAGCACCCCCTTCAGAGCT---GGGGGCTTGGGGAGTGGGGGCGAGGGGAGGCTTGG
s panTro4.chr8              55002574 73 + 143986469 GAGGTGGGCAGGTGGGGAGAAGCACCCCCTTCAGAGCT---GGGGGCTTGGGGAGTGGGGGCGAGGGGAGGCTTGG
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59069537 73 + 153482349 GAGGTGGGCAGGTGGGGAGAAGCACCCCCTTCAGAGCT---GGGGGCTTGGGGAGTGGGGGCGAGGGGAGGCGTGG
i ponAbe2.chr8             C 0 C 0
s rheMac3.chr8              61689259 73 + 150158102 GAGGCGGGCGGGTGGGGAGAAGCACCTCCTTCAGAGTT---GGGGGCTTGAAGATTGGGGGCCAGGGGAGGCGTGG
i rheMac3.chr8             C 0 C 0
s chlSab2.chr8              53283624 73 + 139301422 gaggccggcggGTGGGGAGAAGCACCTCCTTCAGAGTT---GGGGGCTTGAAGATTGGGGGCCAGGGGAGGCGTGG
i chlSab2.chr8             C 0 C 0
s allMis1.JH739658             38042 71 -    691381 GGGATGGGCA-GTGAGCACAGCCCTCCCCAGCAAAGCCCTGAGAGGC--GGGGGGTGAGGG--AGGGGAGGCTGGG
i allMis1.JH739658         I 134 n 134
e ornAna1.Ultra67           12157043  0 -  12745677 I
e tetNig2.chr10              6379385  0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382  0 -   6649201 I
e hapBur1.JH425491            252157  0 -   1273513 I
e neoBri1.JH422308           3491820  0 -   5414369 I
e araMac1.AOUJ01470298           637  0 -       895 I
e takFla1.AOOT01113665           306  0 +       323 I
e fr3.HE591725                289786  0 -    411779 I
e ficAlb2.chr2             148476508  0 + 157563209 I
e anoCar2.chr1             148577473  4 + 263920458 I
e pseHum1.KB221294            562602  0 -   1479532 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214  0 -  25666195 I
e falPer1.KB390952           2753956  0 -  18327016 I
e falChe1.KB397350           1707310  0 -   3649919 I
e macEug2.GL109592            105897  0 -    117391 I
e galGal4.chr27              2947432  0 +   5209285 I
e geoFor1.JH740018           1736802  0 +   2102797 I
e melGal1.chr7              34310641  0 -  38723565 I
e anaPla1.KB742696           1254472  0 -   1270250 I
e amaVit1.AOCU01222764          1324  0 -      1397 I
e apaSpi1.KB929605            579960  0 +   1015623 I
e cheMyd1.KB605988            134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736  1 +    779542 I
e pelSin1.JH224655            133578  3 -    257254 I
e melUnd1.JH556573            751858  2 +  10614383 I
e taeGut2.chr18              2066377  0 -  11201131 I
e macFas5.chr8              58362311 2669 + 146850525 T

a score=714280.000000
s hg38.chr8_KI270814v1_alt    100176 950 +    141812 AAAGAATGGAGTGTGTGGGGCGGGCCGTCCTGGTCCCCAGGGCGCTGGGCTTTCTTCCCTGGCAGACTCCGCAGCGCCTGAGATGTGGACGCCTTGGAGGCGGAGGGCCCAAGTCATCTTTATGAGCAGCAAAAGAAACCCAAAAC-TTTAGCTGGTTTCTCCACCCACAGTTCCTCTTACAGAGCACTTCAGAGAGAATTTTAAAGCGGTATAACAAAATTAAGTATATACTGTGTTTTATTTTTAATGTACACATTTTAAAAGATAATATTAGATACATTATAGAAAGGAACGTAATGAAAGAAATAATTCCCATAATATATCACCTTCTGGGCTAAAAATTCTTTGGCTAAAATCCAATATTTATTTTATATTAATGAATGCCTACATAAATATGTTCTTTACTGAGGGAGCTTAGAAGGACACTTTGaagtgggaagatggttcatgttcttgaa-taagaagactcatttttctcaagatgtgagctctttatcaatttTACATAAACCAAATAAAGCTATCAAAATTTTTAACGTTTTTGAATTACACATG----CTTTCACTATTGTGATGACATTAAGAAAATTTTTGTAACGgttaaaaaagtcttacctttctagatatc-aaatgtgctattgatttccacaaatagtttgctaacagctgaaaagatagataaatgaatacaagagaatagaaaatccagggacactcaaatatatgtaagaattcagaacttgataatggtgatactttgtactagtagg----------aaaagatgaattattttcattaatgaaaggcctgctttttggaggaaactagctagatttttatgccacaaaaataagttcctcatacaatatagactgaaaattttaaatatgtaagatgagagaaacatcagaagaaaacacaAATGCCTTATTTATACAGAAGCATTTTTGTGTTGACAAA
s panTro4.chr8              55002647 939 + 143986469 AAAGAATGGAGTGTGTGGGGCGGACCATCCTGGTCCCCAGGGCGCTGGGCTTTTCTCCCTGGCAGACTCCGCAGCGCCTGAGATGTGGACGCCTTGGAGGCGGAGGGCCCAAGCCATCTTTATGAGCAGCAAAACAAACCCAAAAC-TTTAGCTGGTTTCTCCACCCACAGTTCCTCTTACAGAGCACTTCAGAGAGAATTTTAAAGAGGTATAACAAAATTAAGTATATACAGTGTTTTATTTTTAATGTACACATTTTAAAAGATAATATTAGATACATTATAGAAAGGAACGTAATGAAAGAAATAATTCCCATAATATATCACCTTCTGGGCTAGAAATTCTTTGGCTAAAACCCAATATTTATTTTATATTAATGAATGCCTACATAAATATGTTCTTTACTGAGGGACCTTAGAAGGACACTTTGaagtgggaagatggttcatgttcttgaattaagaagactcatttttctcaagatgtgagctcttTATCAATTTTACATAAACCAAATAAAGCTATCAAAATTTTTAACGTTTTTGAATTACGT----------------TTGTGATGACATTAAGAAAATTTTTGTAACGgttaaaaaagtcttacctttctagatatc-aaatgtgctattaatttccacaaatagtttgctaacagctgaaaagatagataaatgaatataagagaatagaaaatccagggacactcaaatatatgtaagaattcagaacttgataacggtgatactttgtactagtagg----------aaaagatgaattattttcattaatgaaaggcctgctttttggaggaaactagctagatttttatgccacaaaaataagttcctcatacaatatagactgaaaattttaaatatgtaagttgagagaaacatcagaagaaaacacaAATGCCTTATTTATACAGAAGCATTTTTGTGTTGACAAA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59069610 950 + 153482349 AAAGAATGAAGTGTGTGGGGCGGGCCGTCCTGGTCCCCAGGGCGCTGGGCTTTCTTCCCTGGCAGACTCCGCAGCTCCTGAGATGTGGACGCCTTGGAGGCGGAGGGCCCAGGCCATCTTTATGAGCAGCAAAAGAAACCCAAATC-TTTAGCTGGTTTCTCCACCCACAGTTCCTCTTACAGAGCACTTCAGAGAGAATTTTAAAGCGATATAACAAAATTAAGTATACACAGTGTTTTATTTTTAATGTACACATTTTAAAAGATAATATTAGATACATTATAGAAAGGAGCATAATGAAAGAAATAATTCCCATAATATATCACCTTCTGGGCTAAAAATTCTTTGACTAAAACCCAATATTTATTTTATATTAATGAATGCCTACATAAATATGTTCTTTACTGAGGGACCTTAGAAGGACATTTTGaagtggaaagatggttcatgttcttgaa-taagaagactcatttttctcaagatgtgagctctttatcaattttacataaatcaaataaagctatcaaaatTTTTAACGTTTTTGAATTACACATG----CTTTCACTATTGTGATGACATTAAGAAAATTTTTGTAACagttaaaaaagtcttacctttctagatatc-aaatgtgctattaatttccacaaatagtttgctaacagctgaaaagatagataaatgaatacaagagagtagaaaatccaggaacactcaaatatatgtaagaattcagaacttgataatggtgatactttatattagtagg----------aaaagatgaattattttcataaatgaaaggcctgctttttggaggaaactagctagatttttatgtcacaaaaataagttcctcatacaatatagattgaaaattttaaatatgtaagatgagagaaacatcagaagaaaacacaAATGCCTTATTTATACAGAAGCATTTTTGTGTTGACAAA
i ponAbe2.chr8             C 0 C 0
s rheMac3.chr8              61689332 924 + 150158102 AAAGGATGGGGTGTGCGGGGCGGGCGGTCCTAGTCCCCAGGGCTCTTGGCTTTCTTCCCAGGCGGACTCCGCAGCGCCTGTGACGTGGACGCCTTGGAGGCGGAGGGCCCAGGCCATCTTTATGAGCAGCAAAAAGAATCCAAAACTTTTAGCTGGTTCCTCTACCCCCAGTTCCTCTTACAGAGCACTTTAGAGAGAACTTTAAAGTGATTTAACAAAATTAAGTATATAT--CGTTTTATTTTTAATGTACACGTTT--GAAGATAATGTTAGATACATTATAGAAAGGTACATAATGAAAGAAAGAATTCCCATAATATATCACCTTCTGGGCTAAGAATTTTTTGACTAAAATCCAA----TATTTTATATCAATGAATGCCTATGTAAATATGTTCTTTGCTGAGAGACCTTAGAAGGAAACTTTGAAGTGAGAAGATGGTTCATGTTCTTGAA-TAAGAAGACTCATTTTTCTCAAAGTGTGAGATCTTTATTAATTTTAC---------CTAAAGTTATCAAAG---TTAACATTTTTGAATTACACATGCAGTCTTTTAGTATTGTGATGACGT----AACATTTTTGTAATGCAGAAAAATGTcttgcctttctagatatcaaaatgtgctattaatttccacaaatagtttgctaacaactgaaaagatagataaatgaatgcaagagaatagaaaatccaggaacacccaagtataggtaagaatctgtaacatggtaatggcgagactttatactagtagg----------aaaa---gagttatttttataaatgaaatgcctgctttttggaagaaactagctagatttttatgtcacaaaaataagttcctcattgaatatagatt----attttaaatatgcaaaatgagaaaaataccagaagaaaacacaaatgcc-tatttgtacagatacatttttgtgttgacaaa
i rheMac3.chr8             C 0 T 4519
s chlSab2.chr8              53283697 928 + 139301422 AAAGAATGGGGTGTGCGGGGTGGGCGGTCCTTGTCCCCAGGGCTCTGGACTTTCTTCCCAGGCGGACTCCGCAGCGCCTGTGATGTGGACGCCTAGGAGGCGGAGGGCCCAGGCCATCTTTCTGAGCAGCAAAAAGAATCCAAAAC-TTTAGCTGGTTCCTCTACCCACAGTTCCTCTTACAGAGCACTTTGGAGAGAACTTTAAAGTGATTTAACAAAATTAAGTATATAT--TGTTTTATTTTCAATGTACACGTTT--GAAGATAATGTTAGATACATTATAGAAAGGTACATAAT----GAAAGAATTCCCATAATATATCACCTTCTGGGCTAAGAATGTTTTGACTAGAATCCAA----TATTTTATATCAATGAATGCCTATGTAAATATGTTCTTTGCTGAGAGACCTTAGAAGGAAACTTTGaaatgagaagatggttcatgttcttgaa-taagaagactcatttttctcaaggtgtgagatctttattaattttac---------ctaaagTTATCAAAG---TTAACATTTTTGAACTACACATGCAGTCTTTTAGTATTGTGATGATGT----AACATTTTTGTAATGCAGAAAAATGTCTTGCCTTTCTAGATATCAAAATGTGTTATTAATTTCCACAAATAGTTTGCTAACAACTGAAAAGATAGATAAATGAATGTAAGAGAATAG-AAATCCAGAAACACCCAAGTATAGGTAAGAATCTGTAACATGGTAATGGCGAGACTTTATGCTAGTAGGCATAAAAAATAAAA---TAGTTATTTTTATAAATGAAATGCCTGCTTTTTGGAAGAAACTAGCTAGATTTTTATGTCACAAAAATAAGTTCCTCATTGAATATAGATT----ATTTTAAATATGCAAAATGAGAAAAATACCAGGAGAAAACACAAATGCC-TATTTATACAGATACATTTTTGTGTTGACAAA
i chlSab2.chr8             C 0 C 0
e ornAna1.Ultra67           12157043   0 -  12745677 I
e tetNig2.chr10              6379385   0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382   0 -   6649201 I
e hapBur1.JH425491            252157   0 -   1273513 I
e neoBri1.JH422308           3491820   0 -   5414369 I
e araMac1.AOUJ01470298           637   0 -       895 I
e takFla1.AOOT01113665           306   0 +       323 I
e fr3.HE591725                289786   0 -    411779 I
e ficAlb2.chr2             148476508   0 + 157563209 I
e anoCar2.chr1             148577473   4 + 263920458 I
e pseHum1.KB221294            562602   0 -   1479532 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214   0 -  25666195 I
e allMis1.JH739658             38113 134 -    691381 I
e falPer1.KB390952           2753956   0 -  18327016 I
e falChe1.KB397350           1707310   0 -   3649919 I
e macEug2.GL109592            105897   0 -    117391 I
e galGal4.chr27              2947432   0 +   5209285 I
e geoFor1.JH740018           1736802   0 +   2102797 I
e melGal1.chr7              34310641   0 -  38723565 I
e anaPla1.KB742696           1254472   0 -   1270250 I
e amaVit1.AOCU01222764          1324   0 -      1397 I
e apaSpi1.KB929605            579960   0 +   1015623 I
e cheMyd1.KB605988            134509   0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736   1 +    779542 I
e pelSin1.JH224655            133578   3 -    257254 I
e melUnd1.JH556573            751858   2 +  10614383 I
e taeGut2.chr18              2066377   0 -  11201131 I
e macFas5.chr8              58362311 2669 + 146850525 T

a score=26554.000000
s hg38.chr8_KI270814v1_alt    101126 70 +    141812 AACCTGTCTAAGAAGCTCACAAGCAAGCCTTCTGAAGGTTGATCTAGCaaaa-taaaattaaatcacccta
s panTro4.chr8              55003586 70 + 143986469 AACCTGTCTAAGAAGCTCACAAGCAAGCCTTCTGAAGGTTGATCTAGCAAAA-TAAAATTAAATCACCCTA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59070560 63 + 153482349 AACCT-------AAGCTCACAAGCAAGCTTTCTGAAGGTTGATCTAGCAAAA-TAAAATTAAATCATCCTA
i ponAbe2.chr8             C 0 C 0
s chlSab2.chr8              53284625 70 + 139301422 GATCTTCCTAGGAACTTCTCAAGCAAGCATTCTGAA-GTTTATTTAGCAAAATTAAATTTAAATCACCCTA
i chlSab2.chr8             C 0 T 4759
e ornAna1.Ultra67           12157043  0 -  12745677 I
e tetNig2.chr10              6379385  0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382  0 -   6649201 I
e hapBur1.JH425491            252157  0 -   1273513 I
e neoBri1.JH422308           3491820  0 -   5414369 I
e araMac1.AOUJ01470298           637  0 -       895 I
e takFla1.AOOT01113665           306  0 +       323 I
e fr3.HE591725                289786  0 -    411779 I
e ficAlb2.chr2             148476508  0 + 157563209 I
e anoCar2.chr1             148577473  4 + 263920458 I
e pseHum1.KB221294            562602  0 -   1479532 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214  0 -  25666195 I
e allMis1.JH739658             38113 134 -    691381 I
e falPer1.KB390952           2753956  0 -  18327016 I
e falChe1.KB397350           1707310  0 -   3649919 I
e macEug2.GL109592            105897  0 -    117391 I
e galGal4.chr27              2947432  0 +   5209285 I
e geoFor1.JH740018           1736802  0 +   2102797 I
e melGal1.chr7              34310641  0 -  38723565 I
e anaPla1.KB742696           1254472  0 -   1270250 I
e amaVit1.AOCU01222764          1324  0 -      1397 I
e apaSpi1.KB929605            579960  0 +   1015623 I
e cheMyd1.KB605988            134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736  1 +    779542 I
e pelSin1.JH224655            133578  3 -    257254 I
e melUnd1.JH556573            751858  2 +  10614383 I
e taeGut2.chr18              2066377  0 -  11201131 I
e rheMac3.chr8              61690256 4519 + 150158102 T
e macFas5.chr8              58362311 2669 + 146850525 T

a score=1402411.000000
s hg38.chr8_KI270814v1_alt    101196 5268 +    141812 [encoded data, 5305 characters]
s panTro4.chr8              55003656 5292 + 143986469 [encoded data, 5305 characters]
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59070623 5287 + 153482349 [encoded data, 5305 characters]
i ponAbe2.chr8             C 0 C 0
e ornAna1.Ultra67           12157043    0 -  12745677 I
e tetNig2.chr10              6379385    0 +  13272281 I
e punNye1.JH419232           4767720  338 +   5065651 T
e mayZeb1.JH720522            609382    0 -   6649201 I
e hapBur1.JH425491            252157    0 -   1273513 I
e neoBri1.JH422308           3491820    0 -   5414369 I
e araMac1.AOUJ01470298           637    0 -       895 I
e takFla1.AOOT01113665           306    0 +       323 I
e fr3.HE591725                289786    0 -    411779 I
e ficAlb2.chr2             148476508    0 + 157563209 I
e anoCar2.chr1             148577473    4 + 263920458 I
e pseHum1.KB221294            562602    0 -   1479532 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214    0 -  25666195 I
e allMis1.JH739658             38113  134 -    691381 I
e falPer1.KB390952           2753956    0 -  18327016 I
e falChe1.KB397350           1707310    0 -   3649919 I
e macEug2.GL109592            105897    0 -    117391 I
e galGal4.chr27              2947432    0 +   5209285 I
e geoFor1.JH740018           1736802    0 +   2102797 I
e melGal1.chr7              34310641    0 -  38723565 I
e anaPla1.KB742696           1254472    0 -   1270250 I
e amaVit1.AOCU01222764          1324    0 -      1397 I
e apaSpi1.KB929605            579960    0 +   1015623 I
e cheMyd1.KB605988            134509    0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736    1 +    779542 I
e pelSin1.JH224655            133578    3 -    257254 I
e melUnd1.JH556573            751858    2 +  10614383 I
e taeGut2.chr18              2066377    0 -  11201131 I
e rheMac3.chr8              61690256 4519 + 150158102 T
e macFas5.chr8              58362311 2669 + 146850525 T
e chlSab2.chr8              53284695 4759 + 139301422 T

a score=75544.000000
s hg38.chr8_KI270814v1_alt    106464 183 +    141812 TTTACATTTTGACTCTCTTTATGCAGGCAAATTTTTATTTCCTGTGTTGTTTTAAACTAAATTGAAAGAAAAA-AATTGAGTGGTAAAAAATATTTGAAAAAATGTTTTACCTTTAACAAATTTAAATATTTTATAT-AATTCATAAAAGAAAGCCATGCTCTCTAATACTTGTTTAAAAATATT
s panTro4.chr8              55008948 183 + 143986469 TTCACATTTTGACTCTGTTTATGCAGGCAAATTTTTATTTCCTGTGTTGTTTTAAACTAAATTGAAAGAAAAA-AATTGAGTGGTAAAAAATATTTGAAAAAATGTTTTACCTTTAACaaatttaaatattttatat-aattCATAAAAGAAAGCCATGCTCTCTAATACTTGTTTAAAAATATT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59075910 183 + 153482349 TTTACATTTTGACTCTGTTTATGCAGGTAAATTTTTATTTCCTGTGTTGTTTTAAACTAAATTGAAAGAAAAA-AATTGAGTGGtaaaaaatatttgaaaaaatgttttacttttaacaaatgtaaatattttataa-aattCATAAAAGAAAGCCATGCTCTCTAATACTTGTTTAAAAATATT
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8              88483308 181 - 146850525 tttacatgttggcTCAATTTATGCAGGCCAACTTTGCTTTCCTGTGTTGTTGTACACTAGTTAGAAAAAAAAATACTTCAGTCA-AAAAAATAATTCAAAA---GTTTTACCTATAACAAATTCAAATATGTACCATAAATGCATAAAAGAAAGCCATACTCTCTAATACTTTTTGAAAGATATT
i macFas5.chr8             n 2669 C 0
e ornAna1.Ultra67           12157043   0 -  12745677 I
e tetNig2.chr10              6379385   0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382   0 -   6649201 I
e hapBur1.JH425491            252157   0 -   1273513 I
e neoBri1.JH422308           3491820   0 -   5414369 I
e araMac1.AOUJ01470298           637   0 -       895 I
e takFla1.AOOT01113665           306   0 +       323 I
e fr3.HE591725                289786   0 -    411779 I
e ficAlb2.chr2             148476508   0 + 157563209 I
e anoCar2.chr1             148577473   4 + 263920458 I
e pseHum1.KB221294            562602   0 -   1479532 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214   0 -  25666195 I
e allMis1.JH739658             38113 134 -    691381 I
e falPer1.KB390952           2753956   0 -  18327016 I
e falChe1.KB397350           1707310   0 -   3649919 I
e macEug2.GL109592            105897   0 -    117391 I
e galGal4.chr27              2947432   0 +   5209285 I
e geoFor1.JH740018           1736802   0 +   2102797 I
e melGal1.chr7              34310641   0 -  38723565 I
e anaPla1.KB742696           1254472   0 -   1270250 I
e amaVit1.AOCU01222764          1324   0 -      1397 I
e apaSpi1.KB929605            579960   0 +   1015623 I
e cheMyd1.KB605988            134509   0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736   1 +    779542 I
e pelSin1.JH224655            133578   3 -    257254 I
e melUnd1.JH556573            751858   2 +  10614383 I
e taeGut2.chr18              2066377   0 -  11201131 I
e rheMac3.chr8              61690256 4519 + 150158102 T
e chlSab2.chr8              53284695 4759 + 139301422 T

a score=110225.000000
s hg38.chr8_KI270814v1_alt    106647 248 +    141812 AATCTTTAAAGTAAAAT---CTTTGAA-ATTAAGTTATTTCAAAATGTTTTCATTTAGGTAATGTTTGGGCTTCCAAATATGAATAACTGTTTCTTTCATATGTCAAT-------------ATTAAGA-------------AAAATATTTTG-AAGGTAACATTGGTTGATCTCTAACATTTTCCTTTCACTTCAATGTTTGCATTGTATGAAAATAGTC-TTACTGCCATTAACACATTTTCATTATA-GGCAGCATAATGGAGAGCAGTGTTTCAAtag
s panTro4.chr8              55009131 248 + 143986469 AATCTTTAAAGTAAAAT---CTTTGAA-ATTAAGTTATTTCAAAATGTTTTCATTTAGGTAATGTTTGGGCTTCAAAATATGAATAACTGTTTCTTTCGTATGTCAAT-------------ATTAAGA-------------AAAATATTTTG-AAGATAACATTGGTTGATCTCTAACATTTTCCTTTCACTTCAATGTTTGCATTGTATGAAAATAGTC-TTACTGCCATTAACACATTTTCATTATA-GGCAGCATAATGGAGAGCAGTGTTTCAAtag
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59076093 249 + 153482349 AATCTTTAAAGTAAAAT---CTTTGAA-ATTAAGTTATTTCAAAATGTTTTCATTTAGGGAATGTTTGGGCTTCCAAATATGAATAGCTGTTTCTTTCATATGTCAAT-------------ATTAAGA-------------CAAATATTTTG-AAGATAACATTGGTTGATCTCTAACATTTTCCTTTCACTTCAATGTTTGCATTGTATGAAAATAATC-TTACTGCCATTGACACATTTTCTTTATAGGGCAGCATGATGGAGAGCAGTGTTTCAAtag
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8              88483489 253 - 146850525 AGTATTTAAAGTAAAAT---GTTAGA-----CCATTATTTCAAATTATTTTTATTTAGGGATTGCTTAAGCTTCCAAATAGGAAAAATTGACCCTTACATATGTCAAT-------------GTTAAAACAAGTGGATT--TCAAATATTTTG-AAAATAACAATGGTTGATCTCT-ACATCGT-TTTTCACTTCGATGTTTGTCTTGTATGAAAACAGTTGTTGTTACCTTTGACATACTCTCATTACA-GACAGCA-GGTGGAGAGCAGTGATGCCATAG
i macFas5.chr8             C 0 T 30275
s macEug2.GL124958             25856 265 -     59456 AAATTCCAAAGGACAATGAACTTTGACTACAGAATTGTTTCCAGTTATTTTCATTAAAGAAATGCTTT----------TAAGAATATATGAATTATAAATATGTGAATTGGATATTACCTGATTTACACATTTTAGCTCATAAAATACTTTATTAAGCAAGA--AGTGGGCTTCT-ACCTTGT-TTTTTGCTTCCATTTCTACATTGTATCTAAACAGCC-TTGCTGCTATCTTTGTGTTATGTGCACA-GGCAGCATAGTGAAGTGCAGTGTTGTGATAG
i macEug2.GL124958         n 0 n 0
e ornAna1.Ultra67           12157043   0 -  12745677 I
e tetNig2.chr10              6379385   0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382   0 -   6649201 I
e hapBur1.JH425491            252157   0 -   1273513 I
e neoBri1.JH422308           3491820   0 -   5414369 I
e araMac1.AOUJ01470298           637   0 -       895 I
e takFla1.AOOT01113665           306   0 +       323 I
e fr3.HE591725                289786   0 -    411779 I
e ficAlb2.chr2             148476508   0 + 157563209 I
e anoCar2.chr1             148577473   4 + 263920458 I
e pseHum1.KB221294            562602   0 -   1479532 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214   0 -  25666195 I
e allMis1.JH739658             38113 134 -    691381 I
e falPer1.KB390952           2753956   0 -  18327016 I
e falChe1.KB397350           1707310   0 -   3649919 I
e galGal4.chr27              2947432   0 +   5209285 I
e geoFor1.JH740018           1736802   0 +   2102797 I
e melGal1.chr7              34310641   0 -  38723565 I
e anaPla1.KB742696           1254472   0 -   1270250 I
e amaVit1.AOCU01222764          1324   0 -      1397 I
e apaSpi1.KB929605            579960   0 +   1015623 I
e cheMyd1.KB605988            134509   0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736   1 +    779542 I
e pelSin1.JH224655            133578   3 -    257254 I
e melUnd1.JH556573            751858   2 +  10614383 I
e taeGut2.chr18              2066377   0 -  11201131 I
e rheMac3.chr8              61690256 4519 + 150158102 T
e chlSab2.chr8              53284695 4759 + 139301422 T

a score=1215074.000000
s hg38.chr8_KI270814v1_alt    106895 4558 +    141812 [encoded data, 4579 characters]
s panTro4.chr8              55009379 4556 + 143986469 [encoded data, 4579 characters]
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59076342 4573 + 153482349 [encoded data, 4579 characters]
i ponAbe2.chr8             C 0 C 0
e ornAna1.Ultra67           12157043    0 -  12745677 I
e tetNig2.chr10              6379385    0 +  13272281 I
e punNye1.JH419232           4767720  338 +   5065651 T
e mayZeb1.JH720522            609382    0 -   6649201 I
e hapBur1.JH425491            252157    0 -   1273513 I
e neoBri1.JH422308           3491820    0 -   5414369 I
e araMac1.AOUJ01470298           637    0 -       895 I
e takFla1.AOOT01113665           306    0 +       323 I
e fr3.HE591725                289786    0 -    411779 I
e ficAlb2.chr2             148476508    0 + 157563209 I
e anoCar2.chr1             148577473    4 + 263920458 I
e pseHum1.KB221294            562602    0 -   1479532 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214    0 -  25666195 I
e allMis1.JH739658             38113  134 -    691381 I
e falPer1.KB390952           2753956    0 -  18327016 I
e falChe1.KB397350           1707310    0 -   3649919 I
e macEug2.GL124958             26121    0 -     59456 I
e galGal4.chr27              2947432    0 +   5209285 I
e geoFor1.JH740018           1736802    0 +   2102797 I
e melGal1.chr7              34310641    0 -  38723565 I
e anaPla1.KB742696           1254472    0 -   1270250 I
e amaVit1.AOCU01222764          1324    0 -      1397 I
e apaSpi1.KB929605            579960    0 +   1015623 I
e cheMyd1.KB605988            134509    0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736    1 +    779542 I
e pelSin1.JH224655            133578    3 -    257254 I
e melUnd1.JH556573            751858    2 +  10614383 I
e taeGut2.chr18              2066377    0 -  11201131 I
e rheMac3.chr8              61690256 4519 + 150158102 T
e macFas5.chr8              88483742 30275 - 146850525 T
e chlSab2.chr8              53284695 4759 + 139301422 T

a score=38009.000000
s hg38.chr8_KI270814v1_alt    111453 122 +    141812 ctgaagttgtgcccacagccaaccctttccccaggtgttc--tgtcccagggagatggaggttctatctattagtccctgactggggctgctgcctttcttttcagaggtgccctgcccagaga
s panTro4.chr8              55013935 122 + 143986469 ctgaagttgtgcccacagccacccctttccccaggtgttc--tgtcccagggagatggaggttctatctattagtccctgactggggctgctgcctttcttttcagaggtgccctgcccagaga
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59080915 122 + 153482349 ctgaagttgtgcctacagccacccctttccccaggtgttc--tgtcccagggagatggaggttctatctattagtccctgactggggctgctgcctttcttttcagaggtgccttgcccataga
i ponAbe2.chr8             C 0 C 0
s monDom5.chr5             295219175 118 + 304825324 ctgacattgtgttctaagatccCTCTTTTCTCTAACGTTCCGTGTTCTA---AGATCCCTCTTTTCTCTAACGTTCCATGCTCTGAGATCCCTCTTTTCTCT---AACGTTCCATGCTCTGAGA
i monDom5.chr5             N 0 C 0
e ornAna1.Ultra67           12157043   0 -  12745677 I
e tetNig2.chr10              6379385   0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382   0 -   6649201 I
e hapBur1.JH425491            252157   0 -   1273513 I
e neoBri1.JH422308           3491820   0 -   5414369 I
e araMac1.AOUJ01470298           637   0 -       895 I
e takFla1.AOOT01113665           306   0 +       323 I
e fr3.HE591725                289786   0 -    411779 I
e ficAlb2.chr2             148476508   0 + 157563209 I
e anoCar2.chr1             148577473   4 + 263920458 I
e pseHum1.KB221294            562602   0 -   1479532 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214   0 -  25666195 I
e allMis1.JH739658             38113 134 -    691381 I
e falPer1.KB390952           2753956   0 -  18327016 I
e falChe1.KB397350           1707310   0 -   3649919 I
e macEug2.GL124958             26121   0 -     59456 I
e galGal4.chr27              2947432   0 +   5209285 I
e geoFor1.JH740018           1736802   0 +   2102797 I
e melGal1.chr7              34310641   0 -  38723565 I
e anaPla1.KB742696           1254472   0 -   1270250 I
e amaVit1.AOCU01222764          1324   0 -      1397 I
e apaSpi1.KB929605            579960   0 +   1015623 I
e cheMyd1.KB605988            134509   0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736   1 +    779542 I
e pelSin1.JH224655            133578   3 -    257254 I
e melUnd1.JH556573            751858   2 +  10614383 I
e taeGut2.chr18              2066377   0 -  11201131 I
e rheMac3.chr8              61690256 4519 + 150158102 T
e macFas5.chr8              88483742 30275 - 146850525 T
e chlSab2.chr8              53284695 4759 + 139301422 T

a score=35491.000000
s hg38.chr8_KI270814v1_alt    111575 132 +    141812 ggagaaatctggtagtctggccttagcggccttgctgagctgtggtgggctctgtccagttcaaagttcccagtggctttgtttacactgtgaggataaaactacctattcaagcctcagcaatggcggatg
s panTro4.chr8              55014057 132 + 143986469 ggagaaatctggtagtctggccttagcggccttgctgagctgtggtggcctctgtccagttcaaagttcccagtggctttgtttacactgtgaggataaaactacctattcaagcctcagcaatggcggatg
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59081037 132 + 153482349 ggagaaatctggtagtctggccatagcggccttactgagctgtggtgggctttgtccagttaaaagttcccagtggctttgtttacactgtgaggataaaactacctattcaagcctcagcaatggtggata
i ponAbe2.chr8             C 0 C 0
e ornAna1.Ultra67           12157043   0 -  12745677 I
e tetNig2.chr10              6379385   0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382   0 -   6649201 I
e hapBur1.JH425491            252157   0 -   1273513 I
e neoBri1.JH422308           3491820   0 -   5414369 I
e araMac1.AOUJ01470298           637   0 -       895 I
e takFla1.AOOT01113665           306   0 +       323 I
e fr3.HE591725                289786   0 -    411779 I
e ficAlb2.chr2             148476508   0 + 157563209 I
e anoCar2.chr1             148577473   4 + 263920458 I
e pseHum1.KB221294            562602   0 -   1479532 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214   0 -  25666195 I
e allMis1.JH739658             38113 134 -    691381 I
e falPer1.KB390952           2753956   0 -  18327016 I
e falChe1.KB397350           1707310   0 -   3649919 I
e macEug2.GL124958             26121   0 -     59456 I
e galGal4.chr27              2947432   0 +   5209285 I
e geoFor1.JH740018           1736802   0 +   2102797 I
e melGal1.chr7              34310641   0 -  38723565 I
e anaPla1.KB742696           1254472   0 -   1270250 I
e amaVit1.AOCU01222764          1324   0 -      1397 I
e apaSpi1.KB929605            579960   0 +   1015623 I
e cheMyd1.KB605988            134509   0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736   1 +    779542 I
e pelSin1.JH224655            133578   3 -    257254 I
e melUnd1.JH556573            751858   2 +  10614383 I
e monDom5.chr5             295219293   0 + 304825324 C
e taeGut2.chr18              2066377   0 -  11201131 I
e rheMac3.chr8              61690256 4519 + 150158102 T
e macFas5.chr8              88483742 30275 - 146850525 T
e chlSab2.chr8              53284695 4759 + 139301422 T

a score=1407.000000
s hg38.chr8_KI270814v1_alt    111707 3 +    141812 ccc
s panTro4.chr8              55014189 3 + 143986469 ccc
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59081169 3 + 153482349 ccc
i ponAbe2.chr8             C 0 C 0
s monDom5.chr5             295219293 3 + 304825324 TCC
i monDom5.chr5             C 0 C 0
e ornAna1.Ultra67           12157043 0 -  12745677 I
e tetNig2.chr10              6379385 0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382 0 -   6649201 I
e hapBur1.JH425491            252157 0 -   1273513 I
e neoBri1.JH422308           3491820 0 -   5414369 I
e araMac1.AOUJ01470298           637 0 -       895 I
e takFla1.AOOT01113665           306 0 +       323 I
e fr3.HE591725                289786 0 -    411779 I
e ficAlb2.chr2             148476508 0 + 157563209 I
e anoCar2.chr1             148577473 4 + 263920458 I
e pseHum1.KB221294            562602 0 -   1479532 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214 0 -  25666195 I
e allMis1.JH739658             38113 134 -    691381 I
e falPer1.KB390952           2753956 0 -  18327016 I
e falChe1.KB397350           1707310 0 -   3649919 I
e macEug2.GL124958             26121 0 -     59456 I
e galGal4.chr27              2947432 0 +   5209285 I
e geoFor1.JH740018           1736802 0 +   2102797 I
e melGal1.chr7              34310641 0 -  38723565 I
e anaPla1.KB742696           1254472 0 -   1270250 I
e amaVit1.AOCU01222764          1324 0 -      1397 I
e apaSpi1.KB929605            579960 0 +   1015623 I
e cheMyd1.KB605988            134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736 1 +    779542 I
e pelSin1.JH224655            133578 3 -    257254 I
e melUnd1.JH556573            751858 2 +  10614383 I
e taeGut2.chr18              2066377 0 -  11201131 I
e rheMac3.chr8              61690256 4519 + 150158102 T
e macFas5.chr8              88483742 30275 - 146850525 T
e chlSab2.chr8              53284695 4759 + 139301422 T

a score=47755.000000
s hg38.chr8_KI270814v1_alt    111710 89 +    141812 ttcttcTGCCAAACATTCAATTATGTCAGATGTTTCTTTTCCCAAGCATTCAATATTGTCAGGTTTTTCTCCTGCCAAATATTTAATCT
s panTro4.chr8              55014192 89 + 143986469 ttcttctgccaaacATTCAATTATGTCAGATGTTTCTTTTCCCAAGCATTCAATATTGTCAGGTTTTTCTCCTGCCAAATATTTAATCT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59081172 89 + 153482349 ttcttctgccaaacATTCAATTATGTCAGATGTTTCTTTTCCCAAGCATTTAATATTGTCAGGTTTTTTTCCTGCCAAATATTTAATCT
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8              88453467 89 - 146850525 TTTTTCTGCCAAACATGCCATTTTGTCAGGTGTTTCTTCTGCCAAACATGAAACCTTGTCAGATATTCCCTTTGCCAAAGATGCAATCT
i macFas5.chr8             T 30275 I 5
s monDom5.chr5             295219296 89 + 304825324 CTCTTTTCTCTAACGTTCCGTGTTCTAAGATCCCTCTTTTCTCTAACATTCTATGTTCTAAGATCCCTCTTTTCTCTAACATTCTATGT
i monDom5.chr5             C 0 I 1127
e ornAna1.Ultra67           12157043  0 -  12745677 I
e tetNig2.chr10              6379385  0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382  0 -   6649201 I
e hapBur1.JH425491            252157  0 -   1273513 I
e neoBri1.JH422308           3491820  0 -   5414369 I
e araMac1.AOUJ01470298           637  0 -       895 I
e takFla1.AOOT01113665           306  0 +       323 I
e fr3.HE591725                289786  0 -    411779 I
e ficAlb2.chr2             148476508  0 + 157563209 I
e anoCar2.chr1             148577473  4 + 263920458 I
e pseHum1.KB221294            562602  0 -   1479532 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214  0 -  25666195 I
e allMis1.JH739658             38113 134 -    691381 I
e falPer1.KB390952           2753956  0 -  18327016 I
e falChe1.KB397350           1707310  0 -   3649919 I
e macEug2.GL124958             26121  0 -     59456 I
e galGal4.chr27              2947432  0 +   5209285 I
e geoFor1.JH740018           1736802  0 +   2102797 I
e melGal1.chr7              34310641  0 -  38723565 I
e anaPla1.KB742696           1254472  0 -   1270250 I
e amaVit1.AOCU01222764          1324  0 -      1397 I
e apaSpi1.KB929605            579960  0 +   1015623 I
e cheMyd1.KB605988            134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736  1 +    779542 I
e pelSin1.JH224655            133578  3 -    257254 I
e melUnd1.JH556573            751858  2 +  10614383 I
e taeGut2.chr18              2066377  0 -  11201131 I
e rheMac3.chr8              61690256 4519 + 150158102 T
e chlSab2.chr8              53284695 4759 + 139301422 T

a score=68913.000000
s hg38.chr8_KI270814v1_alt    111799 148 +    141812 GATGTGTCTTCTGCCAAATGTTCAATCTTGTCTGATATTTCTTCTGCTGACGATGCAGTCTTCTCAGATGTTTCTTCTGACACACATGCAATCTTCTTAAATGTTCTTTCTGCCAAATATTGAATCTTGTCAGATGTTTCTTTT-GCTA
s panTro4.chr8              55014281 148 + 143986469 GATGTGTCTTCTGCCAAATGTTCAATCTTGTCTGATATTTCTTCTGCTGACGATTCAGTCTTCTCAGATGTTTCTTCTGACACACATGCAATCTTCTTAAATGTTCTTTCTGCCAAATATTGCATCTTGTCAGATGTTTCTTTT-TCTA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59081261 148 + 153482349 GATGTGTCTTCTGCCAAATGTTCAATCTTGTCTGATATTTCTTCTGCTGAACAGGCAGTCTTCTCAGATGTTTCTTCTGACACACGTGCAATCTTCTTAAATGTTCTTTCTGCCAAATATTGAATCTTGTCTGATGTTTCTTTT-GCTA
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8              88453561 148 - 146850525 GATGTGCCTTCTGCCAAACATACAAGGTTTTCAGTGGTTCCTTCTGCCAAACATGCAAGCTTTTCAGATGTTTCCTCTGTCAAACATTCAGTCTTGGCAGATGTTTCTCTTACCAAACATAAAATCTTGTAAGATTTTTCTTGT-GCCA
i macFas5.chr8             I 5 I 518
s monDom5.chr5             295220512 149 + 304825324 GATCCCTCTTTTCTCTAACATTCCATGTTCTAAGGTCCCTCTTTTCGCTAACATTCCATGTTCTAAGGTCCCTCTTTTCGCTAACATTCCATGTTCTAAGATCCCTCTTTTCTCTAACATTCTATGTTCTAAGGTCCCTCTTTTCGCTA
i monDom5.chr5             I 1127 C 0
e ornAna1.Ultra67           12157043   0 -  12745677 I
e tetNig2.chr10              6379385   0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382   0 -   6649201 I
e hapBur1.JH425491            252157   0 -   1273513 I
e neoBri1.JH422308           3491820   0 -   5414369 I
e araMac1.AOUJ01470298           637   0 -       895 I
e takFla1.AOOT01113665           306   0 +       323 I
e fr3.HE591725                289786   0 -    411779 I
e ficAlb2.chr2             148476508   0 + 157563209 I
e anoCar2.chr1             148577473   4 + 263920458 I
e pseHum1.KB221294            562602   0 -   1479532 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214   0 -  25666195 I
e allMis1.JH739658             38113 134 -    691381 I
e falPer1.KB390952           2753956   0 -  18327016 I
e falChe1.KB397350           1707310   0 -   3649919 I
e macEug2.GL124958             26121   0 -     59456 I
e galGal4.chr27              2947432   0 +   5209285 I
e geoFor1.JH740018           1736802   0 +   2102797 I
e melGal1.chr7              34310641   0 -  38723565 I
e anaPla1.KB742696           1254472   0 -   1270250 I
e amaVit1.AOCU01222764          1324   0 -      1397 I
e apaSpi1.KB929605            579960   0 +   1015623 I
e cheMyd1.KB605988            134509   0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736   1 +    779542 I
e pelSin1.JH224655            133578   3 -    257254 I
e melUnd1.JH556573            751858   2 +  10614383 I
e taeGut2.chr18              2066377   0 -  11201131 I
e rheMac3.chr8              61690256 4519 + 150158102 T
e chlSab2.chr8              53284695 4759 + 139301422 T

a score=198.000000
s hg38.chr8_KI270814v1_alt    111947 5 +    141812 ---TTTCT
s panTro4.chr8              55014429 5 + 143986469 ---TTTCT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59081409 5 + 153482349 ---TTTCT
i ponAbe2.chr8             C 0 C 0
s monDom5.chr5             295220661 5 + 304825324 ACATT---
i monDom5.chr5             C 0 C 0
e ornAna1.Ultra67           12157043 0 -  12745677 I
e tetNig2.chr10              6379385 0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382 0 -   6649201 I
e hapBur1.JH425491            252157 0 -   1273513 I
e neoBri1.JH422308           3491820 0 -   5414369 I
e araMac1.AOUJ01470298           637 0 -       895 I
e takFla1.AOOT01113665           306 0 +       323 I
e fr3.HE591725                289786 0 -    411779 I
e ficAlb2.chr2             148476508 0 + 157563209 I
e anoCar2.chr1             148577473 4 + 263920458 I
e pseHum1.KB221294            562602 0 -   1479532 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214 0 -  25666195 I
e allMis1.JH739658             38113 134 -    691381 I
e falPer1.KB390952           2753956 0 -  18327016 I
e falChe1.KB397350           1707310 0 -   3649919 I
e macEug2.GL124958             26121 0 -     59456 I
e galGal4.chr27              2947432 0 +   5209285 I
e geoFor1.JH740018           1736802 0 +   2102797 I
e melGal1.chr7              34310641 0 -  38723565 I
e anaPla1.KB742696           1254472 0 -   1270250 I
e amaVit1.AOCU01222764          1324 0 -      1397 I
e apaSpi1.KB929605            579960 0 +   1015623 I
e cheMyd1.KB605988            134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736 1 +    779542 I
e pelSin1.JH224655            133578 3 -    257254 I
e melUnd1.JH556573            751858 2 +  10614383 I
e taeGut2.chr18              2066377 0 -  11201131 I
e rheMac3.chr8              61690256 4519 + 150158102 T
e macFas5.chr8              88453709 518 - 146850525 I
e chlSab2.chr8              53284695 4759 + 139301422 T

a score=49896.000000
s hg38.chr8_KI270814v1_alt    111952 170 +    141812 -----TCCCACAAAGCCTCCCAACTCTG-ATGGGGTG---------------TTTCTCTTACATCCA-----CCCAGCTC-CTCTTGTTGACTGCA---------------------------------------GCCCCCAGTTGGCAGTTCCTGTTACCTCTTCTTATTGTATGTTTCATACAAG-TTTTTTC--TCTTGAGCATAAGGATCTGCTTC------AGCTTCCGT------------ACTTTTTTTT
s panTro4.chr8              55014434 162 + 143986469 -----TCCCACAAAGCCTCC---------ATGGGGTG---------------CTTTTCTTACATCCA-----CCCAGCTC-CTCTTGTTGTCTGCA---------------------------------------GCCCCCAGTTGGCAGTTCCTGTTACCTCTTCTTATTGTCTGTTTCATACAAG-TTTTTTC--TCTTGAGCATAAGGATCTGCTTC------AGCTTCCAT------------ACTTTTTTTT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59081414 171 + 153482349 -----TCCCACAAAGCCTCCCAACTCTG-ATGGGGTG---------------CTTCTCTTACATCCA-----CCCAGCTC-CTCTTGTTGTCTGCA---------------------------------------GCCCCCAGTTGGCAGTTCCTGTTACCTCTTCTTATTGTCTGTTTCATACAAGTTTTTTTC--TCTTGAGCATAAGGATCTGCTTC------AGCTTCCAT------------ACTTTTTTTT
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8              88454227 167 - 146850525 -----TCCTTCATAGTTCCCAAGCTGTGAATGTGGTG---------------CTTCTCTCACAGCTG------CCAGCTA-CTCCTGCAGTCCCCA---------------------------------------GCCCCCAAAAGGCAGCTCTTTTTACCTCTTTCCGTTGTCTGTTTCATTCAAG--TGCTCC--TATTGAGGACAAGGATCTGCTGC------ACCTTCCAT------------A--GTTTCCC
i macFas5.chr8             I 518 C 0
s monDom5.chr5             295220666 255 + 304825324 CCATGTTCTAAGATCCCTCTTTTCTCTA-ACATCGTGTTCTAAGATCCCTCTTTTCTCTAACATTCTATGTTCTAAGGTCTCTCTTTTCGCTAACATTCCATGTTCTAAGATCCCTCTTTTCTCTAATATTCCGTGTCCTAAGATCCCTCTTTTCTCTAACATTTCCTtttgtaaggtcccttacag-ttctgacattctgtattctaaggttcCTCTTCTCTCTGACATTCTGTGTcaagtcattaacctctgttt
i monDom5.chr5             C 0 N 0
e ornAna1.Ultra67           12157043   0 -  12745677 I
e tetNig2.chr10              6379385   0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382   0 -   6649201 I
e hapBur1.JH425491            252157   0 -   1273513 I
e neoBri1.JH422308           3491820   0 -   5414369 I
e araMac1.AOUJ01470298           637   0 -       895 I
e takFla1.AOOT01113665           306   0 +       323 I
e fr3.HE591725                289786   0 -    411779 I
e ficAlb2.chr2             148476508   0 + 157563209 I
e anoCar2.chr1             148577473   4 + 263920458 I
e pseHum1.KB221294            562602   0 -   1479532 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214   0 -  25666195 I
e allMis1.JH739658             38113 134 -    691381 I
e falPer1.KB390952           2753956   0 -  18327016 I
e falChe1.KB397350           1707310   0 -   3649919 I
e macEug2.GL124958             26121   0 -     59456 I
e galGal4.chr27              2947432   0 +   5209285 I
e geoFor1.JH740018           1736802   0 +   2102797 I
e melGal1.chr7              34310641   0 -  38723565 I
e anaPla1.KB742696           1254472   0 -   1270250 I
e amaVit1.AOCU01222764          1324   0 -      1397 I
e apaSpi1.KB929605            579960   0 +   1015623 I
e cheMyd1.KB605988            134509   0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736   1 +    779542 I
e pelSin1.JH224655            133578   3 -    257254 I
e melUnd1.JH556573            751858   2 +  10614383 I
e taeGut2.chr18              2066377   0 -  11201131 I
e rheMac3.chr8              61690256 4519 + 150158102 T
e chlSab2.chr8              53284695 4759 + 139301422 T

a score=70907.000000
s hg38.chr8_KI270814v1_alt    112122 187 +    141812 CTGGATGGAAGATTTGTGAATCTTCCTGAAGTTATCAACTGGAATTTTGCACTGATGTTATAAGAAGATGTTATCACAGAAGGAGCTCAGGGGCACCTGGCACTTCTGGCTCTTTACAGCAAAGATCTTTTTCATGGCTGTGACTACCAACTTCAATAACACCACAGCTCACCCTCACTCTTCCTCA
s panTro4.chr8              55014596 187 + 143986469 CTGGATGGAAGATTTGTGAATCTTCCTGAAGTTCTCAACTGGAATTTTGCACTGATGTTATAAGAAGATGTTATCACAGAAGGAGCTCAGGGGCACCTGGCACTTCTGGCTCTTTACAGCAAAGATCTTTTTCATGGCTGTGACTACCAACTTCAATAACACCACAGCTCACCCTCACTCTTCCTCA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59081585 187 + 153482349 CTGGATGGAAGATTTGTGAATCTTCCTGAAGTTTTCAACTGGAATTTTGCACTGATGTTATAAGAAGAAGCTATCACAGAAGGAGCTCAGGGGCATCTGGCACTTCTGGCTCTTTATAGCAAAGATCTTTTTCATGGCTGTGACTACCAACTTCAATAACACCACAGCTCACCCTCACTCTTCCTCA
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8              88454394 184 - 146850525 CTGGATGGCAGTTTTGTGAAGCTTCCCAAGAGCCTGATCTAGGCTCTGAGACCAGGGATCT-AGTAGACACAATTACTGAAGAAGTTCAGGGTCACCTGGCTCTTCTGGCTTTCCACAGCACAGATGTTCTTTGTGACTTTGGCTACCAGCTGCAGACTCCCCA-AATTCACCCTC-CCCTTCACCA
i macFas5.chr8             C 0 C 0
e ornAna1.Ultra67           12157043   0 -  12745677 I
e tetNig2.chr10              6379385   0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382   0 -   6649201 I
e hapBur1.JH425491            252157   0 -   1273513 I
e neoBri1.JH422308           3491820   0 -   5414369 I
e araMac1.AOUJ01470298           637   0 -       895 I
e takFla1.AOOT01113665           306   0 +       323 I
e fr3.HE591725                289786   0 -    411779 I
e ficAlb2.chr2             148476508   0 + 157563209 I
e anoCar2.chr1             148577473   4 + 263920458 I
e pseHum1.KB221294            562602   0 -   1479532 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214   0 -  25666195 I
e allMis1.JH739658             38113 134 -    691381 I
e falPer1.KB390952           2753956   0 -  18327016 I
e falChe1.KB397350           1707310   0 -   3649919 I
e macEug2.GL124958             26121   0 -     59456 I
e galGal4.chr27              2947432   0 +   5209285 I
e geoFor1.JH740018           1736802   0 +   2102797 I
e melGal1.chr7              34310641   0 -  38723565 I
e anaPla1.KB742696           1254472   0 -   1270250 I
e amaVit1.AOCU01222764          1324   0 -      1397 I
e apaSpi1.KB929605            579960   0 +   1015623 I
e cheMyd1.KB605988            134509   0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736   1 +    779542 I
e pelSin1.JH224655            133578   3 -    257254 I
e melUnd1.JH556573            751858   2 +  10614383 I
e taeGut2.chr18              2066377   0 -  11201131 I
e rheMac3.chr8              61690256 4519 + 150158102 T
e chlSab2.chr8              53284695 4759 + 139301422 T

a score=12867.000000
s hg38.chr8_KI270814v1_alt    112309 49 +    141812 CCTCCCCTCCGACCCCAATGCCAGCAAGCAATTTGCTCTGGCCAAGATC
s panTro4.chr8              55014783 49 + 143986469 CCTTCCCTCCAACCCCAATGCCAGCAAGCAATTTTCTCTGGCCAAGATC
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59081772 49 + 153482349 CCTTCCCTCCAACCCCAATGCCAGCAATCAATTTGCTCTGGGCAAGATC
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8              88454578 48 - 146850525 CACTATCTCCAA-CCAAACATCAGCAATCAAAGCTGTCTGGCCAATGGC
i macFas5.chr8             C 0 C 0
s pelSin1.JH207030             78365 46 -     84316 CCTTGTGCCTGTCCTGAGTTCCAG-AGGCATTTCCCCCTG--CATGACC
i pelSin1.JH207030         n 3 I 12
s danRer10.chr6             58381286 48 +  60272633 CCTGTCCGTCTGTCACCATGTTAATTAG-AGGTATGTCTGGCCGACATG
i danRer10.chr6            N 0 C 0
e ornAna1.Ultra67           12157043  0 -  12745677 I
e tetNig2.chr10              6379385  0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382  0 -   6649201 I
e hapBur1.JH425491            252157  0 -   1273513 I
e neoBri1.JH422308           3491820  0 -   5414369 I
e araMac1.AOUJ01470298           637  0 -       895 I
e takFla1.AOOT01113665           306  0 +       323 I
e fr3.HE591725                289786  0 -    411779 I
e ficAlb2.chr2             148476508  0 + 157563209 I
e anoCar2.chr1             148577473  4 + 263920458 I
e pseHum1.KB221294            562602  0 -   1479532 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214  0 -  25666195 I
e allMis1.JH739658             38113 134 -    691381 I
e falPer1.KB390952           2753956  0 -  18327016 I
e falChe1.KB397350           1707310  0 -   3649919 I
e macEug2.GL124958             26121  0 -     59456 I
e galGal4.chr27              2947432  0 +   5209285 I
e geoFor1.JH740018           1736802  0 +   2102797 I
e melGal1.chr7              34310641  0 -  38723565 I
e anaPla1.KB742696           1254472  0 -   1270250 I
e amaVit1.AOCU01222764          1324  0 -      1397 I
e apaSpi1.KB929605            579960  0 +   1015623 I
e cheMyd1.KB605988            134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736  1 +    779542 I
e melUnd1.JH556573            751858  2 +  10614383 I
e taeGut2.chr18              2066377  0 -  11201131 I
e rheMac3.chr8              61690256 4519 + 150158102 T
e chlSab2.chr8              53284695 4759 + 139301422 T

a score=2183.000000
s hg38.chr8_KI270814v1_alt    112358  7 +    141812 TCTGACA-----------
s panTro4.chr8              55014832  7 + 143986469 TCTGACA-----------
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59081821  7 + 153482349 TCTGACA-----------
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8              88454626  7 - 146850525 TCCAACA-----------
i macFas5.chr8             C 0 I 6
s ficAlb2.chr4A             19369727  7 +  21182716 TCTGACA-----------
i ficAlb2.chr4A            n 0 C 0
s danRer10.chr6             58381334 13 +  60272633 -----CATGGACTATGCA
i danRer10.chr6            C 0 C 0
e ornAna1.Ultra67           12157043  0 -  12745677 I
e tetNig2.chr10              6379385  0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382  0 -   6649201 I
e hapBur1.JH425491            252157  0 -   1273513 I
e neoBri1.JH422308           3491820  0 -   5414369 I
e araMac1.AOUJ01470298           637  0 -       895 I
e takFla1.AOOT01113665           306  0 +       323 I
e fr3.HE591725                289786  0 -    411779 I
e anoCar2.chr1             148577473  4 + 263920458 I
e pseHum1.KB221294            562602  0 -   1479532 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214  0 -  25666195 I
e allMis1.JH739658             38113 134 -    691381 I
e falPer1.KB390952           2753956  0 -  18327016 I
e falChe1.KB397350           1707310  0 -   3649919 I
e macEug2.GL124958             26121  0 -     59456 I
e galGal4.chr27              2947432  0 +   5209285 I
e geoFor1.JH740018           1736802  0 +   2102797 I
e melGal1.chr7              34310641  0 -  38723565 I
e anaPla1.KB742696           1254472  0 -   1270250 I
e amaVit1.AOCU01222764          1324  0 -      1397 I
e apaSpi1.KB929605            579960  0 +   1015623 I
e cheMyd1.KB605988            134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736  1 +    779542 I
e pelSin1.JH207030             78411 12 -     84316 I
e melUnd1.JH556573            751858  2 +  10614383 I
e taeGut2.chr18              2066377  0 -  11201131 I
e rheMac3.chr8              61690256 4519 + 150158102 T
e chlSab2.chr8              53284695 4759 + 139301422 T

a score=1000.000000
s hg38.chr8_KI270814v1_alt    112365 1 +    141812 G
s panTro4.chr8              55014839 1 + 143986469 G
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59081828 1 + 153482349 G
i ponAbe2.chr8             C 0 C 0
s ficAlb2.chr4A             19369734 1 +  21182716 G
i ficAlb2.chr4A            C 0 C 0
s danRer10.chr6             58381347 1 +  60272633 G
i danRer10.chr6            C 0 I 9
e ornAna1.Ultra67           12157043 0 -  12745677 I
e tetNig2.chr10              6379385 0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382 0 -   6649201 I
e hapBur1.JH425491            252157 0 -   1273513 I
e neoBri1.JH422308           3491820 0 -   5414369 I
e araMac1.AOUJ01470298           637 0 -       895 I
e takFla1.AOOT01113665           306 0 +       323 I
e fr3.HE591725                289786 0 -    411779 I
e anoCar2.chr1             148577473 4 + 263920458 I
e pseHum1.KB221294            562602 0 -   1479532 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214 0 -  25666195 I
e allMis1.JH739658             38113 134 -    691381 I
e falPer1.KB390952           2753956 0 -  18327016 I
e falChe1.KB397350           1707310 0 -   3649919 I
e macEug2.GL124958             26121 0 -     59456 I
e galGal4.chr27              2947432 0 +   5209285 I
e geoFor1.JH740018           1736802 0 +   2102797 I
e melGal1.chr7              34310641 0 -  38723565 I
e anaPla1.KB742696           1254472 0 -   1270250 I
e amaVit1.AOCU01222764          1324 0 -      1397 I
e apaSpi1.KB929605            579960 0 +   1015623 I
e cheMyd1.KB605988            134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736 1 +    779542 I
e pelSin1.JH207030             78411 12 -     84316 I
e melUnd1.JH556573            751858 2 +  10614383 I
e taeGut2.chr18              2066377 0 -  11201131 I
e rheMac3.chr8              61690256 4519 + 150158102 T
e macFas5.chr8              88454633 6 - 146850525 I
e chlSab2.chr8              53284695 4759 + 139301422 T

a score=1553.000000
s hg38.chr8_KI270814v1_alt    112366 4 +    141812 AGGT
s panTro4.chr8              55014840 4 + 143986469 AGGT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59081829 4 + 153482349 AGGT
i ponAbe2.chr8             C 0 C 0
s ficAlb2.chr4A             19369735 4 +  21182716 ATGT
i ficAlb2.chr4A            C 0 I 49
s danRer10.chr6             58381357 4 +  60272633 CAGC
i danRer10.chr6            I 9 C 0
s astMex1.KB882152            820152 4 +   2582946 AGGA
i astMex1.KB882152         N 0 C 0
e ornAna1.Ultra67           12157043 0 -  12745677 I
e tetNig2.chr10              6379385 0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382 0 -   6649201 I
e hapBur1.JH425491            252157 0 -   1273513 I
e neoBri1.JH422308           3491820 0 -   5414369 I
e araMac1.AOUJ01470298           637 0 -       895 I
e takFla1.AOOT01113665           306 0 +       323 I
e fr3.HE591725                289786 0 -    411779 I
e anoCar2.chr1             148577473 4 + 263920458 I
e pseHum1.KB221294            562602 0 -   1479532 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214 0 -  25666195 I
e allMis1.JH739658             38113 134 -    691381 I
e falPer1.KB390952           2753956 0 -  18327016 I
e falChe1.KB397350           1707310 0 -   3649919 I
e macEug2.GL124958             26121 0 -     59456 I
e galGal4.chr27              2947432 0 +   5209285 I
e geoFor1.JH740018           1736802 0 +   2102797 I
e melGal1.chr7              34310641 0 -  38723565 I
e anaPla1.KB742696           1254472 0 -   1270250 I
e amaVit1.AOCU01222764          1324 0 -      1397 I
e apaSpi1.KB929605            579960 0 +   1015623 I
e cheMyd1.KB605988            134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736 1 +    779542 I
e pelSin1.JH207030             78411 12 -     84316 I
e melUnd1.JH556573            751858 2 +  10614383 I
e taeGut2.chr18              2066377 0 -  11201131 I
e rheMac3.chr8              61690256 4519 + 150158102 T
e macFas5.chr8              88454633 6 - 146850525 I
e chlSab2.chr8              53284695 4759 + 139301422 T

a score=-55272.000000
s hg38.chr8_KI270814v1_alt    112370 127 +    141812 CTCATCGTCTTGAGACTCTTAGAGAACAAACAC---------------ACCAT-------CTCC-------------------------AGCC-----TCTCAGAGCAGA--------AACACACAG-----------TCTCCAGCC-----TCTCACAGAAAaaata--aataaataaataaataaataaataaataaataaaC-----
s panTro4.chr8              55014844 124 + 143986469 CTCATCGTCTTGAGACTCTTAGAGAACAAACAC---------------ACCAT-------CTCC-------------------------AGCC-----TCTCAGAGCAGA--------AACACACAG-----------TCTCCAGCC-----TCTCACAGaaaa---a--aataaataaataaataaataaataaataaataaaC-----
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59081833 123 + 153482349 CTCATCGTCTTGAGACTCTTAGAGAACAAACAC---------------ACCAT-------CTCC-------------------------AGCC-----TCTCAGAGCAGA--------AACACACAG-----------TCTCCAGCC-----TTTCACAGaaaa---a--aataaa-aaataaataaataaataaataaataaaC-----
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8              88454639 122 - 146850525 CTGATCATGTCCATCTGTTCAGAGAAGAGAGTC---------------ATCATGAAAACCCTCTCAGAGGAGGATCTTGTTGTTAAAGGAGAC-----TCTCAGAAGAGA--------AACCTTCTG-----------TTTCCAGCC-----TCTGACACTAGG---------------------------------------AC-----
i macFas5.chr8             I 6 C 0
s ficAlb2.chr4A             19369788 105 +  21182716 CTCACAGATGTGAATCTCACAGATGTGAA----------------------TC-------TCAC-------------------------AGATGTGAATCTCACAGATGT--------GA-ATCTCACAGATGTGAATCTCACAGATGTGAATCTCACAGATGT---G--A--------------------------------AT-----
i ficAlb2.chr4A            I 49 I 15
s pelSin1.JH207030             78423  77 -     84316 CTTGGAGGCCTGACACCCCCG-------------------------------T-------CCCC-------------------------AGCT-----CCTTGGAGGCCT--------GACACCCCG-----------TCCCCAGCT-----CCTTGGAGGCCT---G--AC-------------------------------AC-----
i pelSin1.JH207030         I 12 I 4
s danRer10.chr6             58381361 117 +  60272633 CTCG-AGGAGCAAGAGCC---------AATCAGAAGGTAAC-------ACATC-------ACCT-------------------------TAAC-----TGCCAATCAGAACATAGATGGTCTTTCAG-----------TAGCCAATC---------ATAGGATA---ATTTACAACCTCAAGAGCCA----------------ATCAGAA
i danRer10.chr6            C 0 C 0
s astMex1.KB882152            820156 126 +   2582946 CTAGCAGTAACAAGACTCCTAGTAATAAGACACAAAGTAACAAAGCCAACAAT-------ACCA-------------------------GGAC-----TAGCAGTAACAA--------GACTCACAG-----------TAACAAGAC---------ACAAAGTA---A--CAAAACCAACAATGCCAGG--------------ACTAGGA
i astMex1.KB882152         C 0 C 0
e ornAna1.Ultra67           12157043   0 -  12745677 I
e tetNig2.chr10              6379385   0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382   0 -   6649201 I
e hapBur1.JH425491            252157   0 -   1273513 I
e neoBri1.JH422308           3491820   0 -   5414369 I
e araMac1.AOUJ01470298           637   0 -       895 I
e takFla1.AOOT01113665           306   0 +       323 I
e fr3.HE591725                289786   0 -    411779 I
e anoCar2.chr1             148577473   4 + 263920458 I
e pseHum1.KB221294            562602   0 -   1479532 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214   0 -  25666195 I
e allMis1.JH739658             38113 134 -    691381 I
e falPer1.KB390952           2753956   0 -  18327016 I
e falChe1.KB397350           1707310   0 -   3649919 I
e macEug2.GL124958             26121   0 -     59456 I
e galGal4.chr27              2947432   0 +   5209285 I
e geoFor1.JH740018           1736802   0 +   2102797 I
e melGal1.chr7              34310641   0 -  38723565 I
e anaPla1.KB742696           1254472   0 -   1270250 I
e amaVit1.AOCU01222764          1324   0 -      1397 I
e apaSpi1.KB929605            579960   0 +   1015623 I
e cheMyd1.KB605988            134509   0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736   1 +    779542 I
e melUnd1.JH556573            751858   2 +  10614383 I
e taeGut2.chr18              2066377   0 -  11201131 I
e rheMac3.chr8              61690256 4519 + 150158102 T
e chlSab2.chr8              53284695 4759 + 139301422 T

a score=-10100.000000
s hg38.chr8_KI270814v1_alt    112497  8 +    141812 CTCACCA--------T
s panTro4.chr8              55014968  8 + 143986469 CTCACCA--------T
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59081956  8 + 153482349 CTCACCA--------T
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8              88454761  8 - 146850525 CTCACCA--------C
i macFas5.chr8             C 0 C 0
s ornAna1.Contig1391          113400  8 -    174025 CTTACAA--------C
i ornAna1.Contig1391       n 0 C 0
s ficAlb2.chr4A             19369908 16 +  21182716 CTCACAGATGTGAATC
i ficAlb2.chr4A            I 15 C 0
s pelSin1.JH207030             78504  1 -     84316 ---------------T
i pelSin1.JH207030         I 4 C 0
s danRer10.chr6             58381478  3 +  60272633 --CAT-----------
i danRer10.chr6            C 0 C 0
s astMex1.KB882152            820282  2 +   2582946 ---GT-----------
i astMex1.KB882152         C 0 C 0
e tetNig2.chr10              6379385  0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382  0 -   6649201 I
e hapBur1.JH425491            252157  0 -   1273513 I
e neoBri1.JH422308           3491820  0 -   5414369 I
e araMac1.AOUJ01470298           637  0 -       895 I
e takFla1.AOOT01113665           306  0 +       323 I
e fr3.HE591725                289786  0 -    411779 I
e anoCar2.chr1             148577473  4 + 263920458 I
e pseHum1.KB221294            562602  0 -   1479532 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214  0 -  25666195 I
e allMis1.JH739658             38113 134 -    691381 I
e falPer1.KB390952           2753956  0 -  18327016 I
e falChe1.KB397350           1707310  0 -   3649919 I
e macEug2.GL124958             26121  0 -     59456 I
e galGal4.chr27              2947432  0 +   5209285 I
e geoFor1.JH740018           1736802  0 +   2102797 I
e melGal1.chr7              34310641  0 -  38723565 I
e anaPla1.KB742696           1254472  0 -   1270250 I
e amaVit1.AOCU01222764          1324  0 -      1397 I
e apaSpi1.KB929605            579960  0 +   1015623 I
e cheMyd1.KB605988            134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736  1 +    779542 I
e melUnd1.JH556573            751858  2 +  10614383 I
e taeGut2.chr18              2066377  0 -  11201131 I
e rheMac3.chr8              61690256 4519 + 150158102 T
e chlSab2.chr8              53284695 4759 + 139301422 T

a score=-81860.000000
s hg38.chr8_KI270814v1_alt    112505  94 +    141812 CTCCAGTT-----T--------------------------CTCAGAGGAGAGTC------------------TGGCCATCTCCTACTTTGCAGTGAATAGACTCACTGTCTCCAGAC-----TG----TCAGATGAGAGACTTACGTCTTGC
s panTro4.chr8              55014976  93 + 143986469 CTCCAGTT-----T--------------------------CTC-GAGGAGAGTC------------------TGGCCATCTCCTACTTCGCAGTGAATAGACTCACTGTCTCCAGAC-----TG----TCAGATGAGAGACTTACCTTTTGC
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59081964  94 + 153482349 CTCCAGTT-----T--------------------------CTCAGGGGAGAGTC------------------TGGCCATCTCCTACTTCACAGTGAATAGACTCACTGTCTCCAGAC-----TG----TCAGATGAGAGACCTACCTCTTAC
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8              88454769  34 - 146850525 CTCCAGTC-----T--------------------------CTTAGAGAAGAAAT------------------TTGCCA--------------------------------------------TG----TCA---------------------
i macFas5.chr8             C 0 C 0
s ornAna1.Contig1391          113408 117 -    174025 CTCCACTC-----TGAGGAGTTTGTCGTTCATAGCCTCTACTCTGAGGAG---C------------------TTGTCGTTTGTAGCCTCTACTTTGAGGAGCTCATTGTCCGCAGCC-----TC----CACTTTGAGGACCTCCGCTCTTAC
i ornAna1.Contig1391       C 0 C 0
s ficAlb2.chr4A             19369924  79 +  21182716 TCACAGATGTGAAT--------------------------CTCACAGA-----T------------------GTGA-ATCTCACA----GATGTGAAT----------CTCACAGATGTGAATC----TCACAGATGTGAATC-----TCAC
i ficAlb2.chr4A            C 0 C 0
s pelSin1.JH207030             78505  64 -     84316 CCCCAGCT-----C--------------------------CTTGGAGG-----C------------------CTGACACCCCG-------------------------TCCCCAGCT-----CC----TTGGAGGCCTGACACCCCGTCCCC
i pelSin1.JH207030         C 0 C 0
s xenTro7.KB021650          39349670  94 - 150913983 CTAGAGCC-----T--------------------------CTTAGAGGTGGATT------------------AGAGATGCTAGAGCCTCTTAGAGGTGGAACAGAGATGCTAGAGCC-----TC----TTAGAAGAGGACTAGAGATGCTAG
i xenTro7.KB021650         N 0 C 0
s danRer10.chr6             58381481  73 +  60272633 AGATGGTC-----T--------------------------TTCAGTAGCCAATC--------------------------------------ATAGGATAATTTACAACCTCAAGAG-----CCAA--TCAGAACATAGATGGTCTTTC---
i danRer10.chr6            C 0 C 0
s astMex1.KB882152            820284 113 +   2582946 AACAAGAC-----T--------------------------CATAGTAACAAGTctcaaagtgaaaaaaaaaacaacaataccaGGGCTAGGAGTAACAAGACTCATAGTAACAAGTc-----tcaaagtgaaaaaaaaaacaataccag---
i astMex1.KB882152         C 0 C 0
e tetNig2.chr10              6379385   0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382   0 -   6649201 I
e hapBur1.JH425491            252157   0 -   1273513 I
e neoBri1.JH422308           3491820   0 -   5414369 I
e araMac1.AOUJ01470298           637   0 -       895 I
e takFla1.AOOT01113665           306   0 +       323 I
e fr3.HE591725                289786   0 -    411779 I
e anoCar2.chr1             148577473   4 + 263920458 I
e pseHum1.KB221294            562602   0 -   1479532 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214   0 -  25666195 I
e allMis1.JH739658             38113 134 -    691381 I
e falPer1.KB390952           2753956   0 -  18327016 I
e falChe1.KB397350           1707310   0 -   3649919 I
e macEug2.GL124958             26121   0 -     59456 I
e galGal4.chr27              2947432   0 +   5209285 I
e geoFor1.JH740018           1736802   0 +   2102797 I
e melGal1.chr7              34310641   0 -  38723565 I
e anaPla1.KB742696           1254472   0 -   1270250 I
e amaVit1.AOCU01222764          1324   0 -      1397 I
e apaSpi1.KB929605            579960   0 +   1015623 I
e cheMyd1.KB605988            134509   0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736   1 +    779542 I
e melUnd1.JH556573            751858   2 +  10614383 I
e taeGut2.chr18              2066377   0 -  11201131 I
e rheMac3.chr8              61690256 4519 + 150158102 T
e chlSab2.chr8              53284695 4759 + 139301422 T

a score=-27889.000000
s hg38.chr8_KI270814v1_alt    112599 41 +    141812 ---AGCC-----TCTAAGAAGAGGACCC---------CAATGTCTCCAGCC-----TCTCAAA
s panTro4.chr8              55015069 41 + 143986469 ---AGCC-----TCTAAGAAGAGGACCC---------CAATGTCTCCAGCC-----TCTCAAA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59082058 41 + 153482349 ---AGCC-----AATAAGAGGAGGACCT---------CAATATCTCCAGCC-----TCTCAAA
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8              88454803 41 - 146850525 ---AGCC-----TCTCAGAAAAGTACAT---------CAGGGTCCTCAGCC-----TCTCACA
i macFas5.chr8             C 0 T 212
s ornAna1.Contig1391          113525 40 -    174025 ---AACC-----TCCTCTCTGAGGAGCT---------C-TTGTTCCCAGCC-----TCTACTC
i ornAna1.Contig1391       C 0 C 0
s ficAlb2.chr4A             19370003 46 +  21182716 ---AGATGTGAATCTCACAGATGTGAAT---------C-----TCACAGATGTGAATCTCACA
i ficAlb2.chr4A            C 0 C 0
s pelSin1.JH207030             78569 41 -     84316 ---AGCT-----CCTTGGAGGCCTGACA---------CCCCGTCCCCAGCT-----CCTTGGA
i pelSin1.JH207030         C 0 C 0
s xenTro7.KB021650          39349764 41 - 150913983 ---AGCC-----TCTTAGAGGTGGACTA---------GAGATGCAACAGCC-----TCTTAGA
i xenTro7.KB021650         C 0 C 0
s oryLat2.ultracontig146        3308 41 -    113228 ---agac-----gTTCAGAAGACCAGTA---------CTCTGATTACAGTC-----TGACAGA
i oryLat2.ultracontig146   N 0 C 0
s danRer10.chr6             58381554 35 +  60272633 AGTTGCC-----AATCATAGGATAATTTACAAC----CTCA-------------------AGA
i danRer10.chr6            C 0 C 0
s astMex1.KB882152            820397 46 +   2582946 GGCTAGC-----AGTAACAAGACTCATAGTAACAAGACTCAAAG------------TGACAAA
i astMex1.KB882152         C 0 C 0
e tetNig2.chr10              6379385  0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382  0 -   6649201 I
e hapBur1.JH425491            252157  0 -   1273513 I
e neoBri1.JH422308           3491820  0 -   5414369 I
e araMac1.AOUJ01470298           637  0 -       895 I
e takFla1.AOOT01113665           306  0 +       323 I
e fr3.HE591725                289786  0 -    411779 I
e anoCar2.chr1             148577473  4 + 263920458 I
e pseHum1.KB221294            562602  0 -   1479532 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214  0 -  25666195 I
e allMis1.JH739658             38113 134 -    691381 I
e falPer1.KB390952           2753956  0 -  18327016 I
e falChe1.KB397350           1707310  0 -   3649919 I
e macEug2.GL124958             26121  0 -     59456 I
e galGal4.chr27              2947432  0 +   5209285 I
e geoFor1.JH740018           1736802  0 +   2102797 I
e melGal1.chr7              34310641  0 -  38723565 I
e anaPla1.KB742696           1254472  0 -   1270250 I
e amaVit1.AOCU01222764          1324  0 -      1397 I
e apaSpi1.KB929605            579960  0 +   1015623 I
e cheMyd1.KB605988            134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736  1 +    779542 I
e melUnd1.JH556573            751858  2 +  10614383 I
e taeGut2.chr18              2066377  0 -  11201131 I
e rheMac3.chr8              61690256 4519 + 150158102 T
e chlSab2.chr8              53284695 4759 + 139301422 T

a score=-13575.000000
s hg38.chr8_KI270814v1_alt    112640 21 +    141812 GGAGAAACTCATCATCACCAG
s panTro4.chr8              55015110 21 + 143986469 GGAGAAACTCATCATCACCAG
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59082099 21 + 153482349 GGAGAAACTCATCATCACCAG
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8              88454632 21 - 146850525 AGAAACACTGATCATGTCCAT
i macFas5.chr8             T 212 C 0
s ornAna1.Contig1391          113565 21 -    174025 TGAGGAGCTCGTCTCTTACAA
i ornAna1.Contig1391       C 0 C 0
s ficAlb2.chr4A             19370049 16 +  21182716 GATGTGAATC-----TCACAG
i ficAlb2.chr4A            C 0 C 0
s pelSin1.JH207030             78610 21 -     84316 GGCCTGACACCCCGTCCCCAG
i pelSin1.JH207030         C 0 C 0
s xenTro7.KB021650          39349805 21 - 150913983 GGTGGAACAGAGATGCTACAG
i xenTro7.KB021650         C 0 C 0
s oryLat2.ultracontig146        3349 21 -    113228 GGAGCAGTACTCTGATTACAG
i oryLat2.ultracontig146   C 0 I 1
s danRer10.chr6             58381589  8 +  60272633 G----------CCAATCA---
i danRer10.chr6            C 0 C 0
s astMex1.KB882152            820443 11 +   2582946 G----------CCAACAATAG
i astMex1.KB882152         C 0 I 805
e tetNig2.chr10              6379385  0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382  0 -   6649201 I
e hapBur1.JH425491            252157  0 -   1273513 I
e neoBri1.JH422308           3491820  0 -   5414369 I
e araMac1.AOUJ01470298           637  0 -       895 I
e takFla1.AOOT01113665           306  0 +       323 I
e fr3.HE591725                289786  0 -    411779 I
e anoCar2.chr1             148577473  4 + 263920458 I
e pseHum1.KB221294            562602  0 -   1479532 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214  0 -  25666195 I
e allMis1.JH739658             38113 134 -    691381 I
e falPer1.KB390952           2753956  0 -  18327016 I
e falChe1.KB397350           1707310  0 -   3649919 I
e macEug2.GL124958             26121  0 -     59456 I
e galGal4.chr27              2947432  0 +   5209285 I
e geoFor1.JH740018           1736802  0 +   2102797 I
e melGal1.chr7              34310641  0 -  38723565 I
e anaPla1.KB742696           1254472  0 -   1270250 I
e amaVit1.AOCU01222764          1324  0 -      1397 I
e apaSpi1.KB929605            579960  0 +   1015623 I
e cheMyd1.KB605988            134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736  1 +    779542 I
e melUnd1.JH556573            751858  2 +  10614383 I
e taeGut2.chr18              2066377  0 -  11201131 I
e rheMac3.chr8              61690256 4519 + 150158102 T
e chlSab2.chr8              53284695 4759 + 139301422 T

a score=-14667.000000
s hg38.chr8_KI270814v1_alt    112661 15 +    141812 CT------TTTG-GAGGAGAAA
s panTro4.chr8              55015131 15 + 143986469 CT------TTTG-GAGGAGAAA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59082120 15 + 153482349 CT------TTTG-GAGGAGAAA
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8              88454653 16 - 146850525 CT-----GTTCA-GAGAAGAGA
i macFas5.chr8             C 0 C 0
s ornAna1.Contig1391          113586 16 -    174025 CC------TCTGCTCTGAGGAA
i ornAna1.Contig1391       C 0 C 0
s ficAlb2.chr4A             19370065 21 +  21182716 ATGTGAATCTCA-CAGATGTGA
i ficAlb2.chr4A            C 0 C 0
s pelSin1.JH207030             78631 16 -     84316 CT-----CCTTG-GAGGCCTGA
i pelSin1.JH207030         C 0 C 0
s xenTro7.KB021650          39349826 16 - 150913983 CT-----TCTTA-GAGGTGGAC
i xenTro7.KB021650         C 0 C 0
s oryLat2.ultracontig146        3371 15 -    113228 CT------GACA-GAGGACCAG
i oryLat2.ultracontig146   I 1 C 0
s danRer10.chr6             58381597  8 +  60272633 --------------GAACATAG
i danRer10.chr6            C 0 C 0
s astMex1.KB882255             17434 15 -   1586233 CT------CATG-TAGAGGCAA
i astMex1.KB882255         n 805 C 0
e tetNig2.chr10              6379385  0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382  0 -   6649201 I
e hapBur1.JH425491            252157  0 -   1273513 I
e neoBri1.JH422308           3491820  0 -   5414369 I
e araMac1.AOUJ01470298           637  0 -       895 I
e takFla1.AOOT01113665           306  0 +       323 I
e fr3.HE591725                289786  0 -    411779 I
e anoCar2.chr1             148577473  4 + 263920458 I
e pseHum1.KB221294            562602  0 -   1479532 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214  0 -  25666195 I
e allMis1.JH739658             38113 134 -    691381 I
e falPer1.KB390952           2753956  0 -  18327016 I
e falChe1.KB397350           1707310  0 -   3649919 I
e macEug2.GL124958             26121  0 -     59456 I
e galGal4.chr27              2947432  0 +   5209285 I
e geoFor1.JH740018           1736802  0 +   2102797 I
e melGal1.chr7              34310641  0 -  38723565 I
e anaPla1.KB742696           1254472  0 -   1270250 I
e amaVit1.AOCU01222764          1324  0 -      1397 I
e apaSpi1.KB929605            579960  0 +   1015623 I
e cheMyd1.KB605988            134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736  1 +    779542 I
e melUnd1.JH556573            751858  2 +  10614383 I
e taeGut2.chr18              2066377  0 -  11201131 I
e rheMac3.chr8              61690256 4519 + 150158102 T
e chlSab2.chr8              53284695 4759 + 139301422 T

a score=-156277.000000
s hg38.chr8_KI270814v1_alt    112676  96 +    141812 CTGGCTGTCTC-----CAGCC-----TCTCAGA-GA-ATGA-CCTTTCCATCTCC--AGC--CTCTCAC--AAGAGAAACTCACCATGTCCAGCT-----TCTGGAA--A--ATAACTCACCA-T---
s panTro4.chr8              55015146  96 + 143986469 CTGGCTGTCGC-----CAGCC-----TCTCAGA-GA-ATGA-CCTTTCCATCTCC--AGC--CTCTCAC--AAGAGAAACTCACCATGTCCAGCT-----TCTGGAA--A--ATAACTCACCA-T---
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59082135  96 + 153482349 CTGGCTGTCTC-----CAGCC-----TCTCAGA-GA-ATGA-CCTTTCCATCTCC--AGC--CTCTCAC--AAGAGAAACTCACCATGTCCAGCT-----TCTGGAA--A--ATAACTCACCA-T---
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8              88454669 100 - 146850525 GTCATCATGAA-----AACCC-----TCTCAGA-GG-AGGA-TCTTGTTGTTAAAGGAGA--CTCTCAG--AAGAGAAACCTTCTGTTTCCAGCC-----TCTGACACTA--GGACCTCACCA-C---
i macFas5.chr8             C 0 C 0
s ornAna1.Contig1391          113602  98 -    174025 CTCGTTGTTCC-----CAGCC-----TCTACTC-TG-AGGA-ACTTGTCTCTCAT--ATC--CTGCACT--CTGAGGAGCTCATCATTTGCAGCC-----TCCACTCTGA--GGAGCTCGTCT-C---
i ornAna1.Contig1391       C 0 C 0
s ficAlb2.chr4A             19370086  93 +  21182716 ATC-----TCA-----CAGATGTGAATCTCACA-GATGTGA-ATCTCACAGATGT--GAA--T-CTCAC--AGATGTGAATC-----TCACAGATGTGAATCTCACAGAT--GTGAATC---------
i ficAlb2.chr4A            C 0 C 0
s pelSin1.JH207030             78647  99 -     84316 CACCCCGTCCC-----CAGCT-----CCTTGGA-GGCCTGA-CACCCCCGTCCCC--AGC--TCCTTGG--AGGCCTGACACCCCGTCCCCAGCT-----CCTTGGAGGC--CTGACACCCCG-T---
i pelSin1.JH207030         C 0 C 0
s xenTro7.KB021650          39349842  97 - 150913983 TAGAGATGCTA-----TAGCC-----TCTTAGA-GG-TGGA-CTAGAGATGCTAC--GGC--CTCTTAG--AGGTGGACTAGAGATGCTACAGCC-----TCTTAGA-GG--TTGACTAGAGA-T---
i xenTro7.KB021650         C 0 T 269
s oreNil2.chrLG8-24          3785228  88 -  29447820 CTGTGCACCCT-----CAGCC-----TGTCAGA-GG-CTATCCTCCATATTCCCC--TCC--TCATCTG---------------TCTCCTGACA--------TGCCAGTGCTGAGGAATCTTC-CTGT
i oreNil2.chrLG8-24        N 0 C 0
s oryLat2.ultracontig146        3386  99 -    113228 -----TACTCTGATTACAGTC-----TGACAGA-GG------ACCAGTACTCTGT--TTA--CAGTCTGACAGAGGAGCAGTACTCTGATTACAG-----TCTGACAGAG--GAGCAGTACTC-TGAT
i oryLat2.ultracontig146   C 0 C 0
s danRer10.chr6             58381605 101 +  60272633 ATGGTCTTTCAG----TAGCC-----AATCATA-GG-ATAAGATACAACCTCAAG--AGC--CAATCAG--CGCATAGATGGGCTTTC---AGTT-----GCTAATCAGA--GTGAATGATACAACAT
i danRer10.chr6            C 0 C 0
s astMex1.KB882255             17449 101 -   1586233 CTTGTCCTCCTG-----AGCC-------TCATGTAG-AGGAGACTTGTCCTCCTG--AGCCTCAATTGA--AGA--CGATTTACTCTCCTGAGCC-----TCTTGTGAAG--GGGACTTGCTC-TCCT
i astMex1.KB882255         C 0 C 0
e tetNig2.chr10              6379385   0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382   0 -   6649201 I
e hapBur1.JH425491            252157   0 -   1273513 I
e neoBri1.JH422308           3491820   0 -   5414369 I
e araMac1.AOUJ01470298           637   0 -       895 I
e takFla1.AOOT01113665           306   0 +       323 I
e fr3.HE591725                289786   0 -    411779 I
e anoCar2.chr1             148577473   4 + 263920458 I
e pseHum1.KB221294            562602   0 -   1479532 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214   0 -  25666195 I
e allMis1.JH739658             38113 134 -    691381 I
e falPer1.KB390952           2753956   0 -  18327016 I
e falChe1.KB397350           1707310   0 -   3649919 I
e macEug2.GL124958             26121   0 -     59456 I
e galGal4.chr27              2947432   0 +   5209285 I
e geoFor1.JH740018           1736802   0 +   2102797 I
e melGal1.chr7              34310641   0 -  38723565 I
e anaPla1.KB742696           1254472   0 -   1270250 I
e amaVit1.AOCU01222764          1324   0 -      1397 I
e apaSpi1.KB929605            579960   0 +   1015623 I
e cheMyd1.KB605988            134509   0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736   1 +    779542 I
e melUnd1.JH556573            751858   2 +  10614383 I
e taeGut2.chr18              2066377   0 -  11201131 I
e rheMac3.chr8              61690256 4519 + 150158102 T
e chlSab2.chr8              53284695 4759 + 139301422 T

a score=-25163.000000
s hg38.chr8_KI270814v1_alt    112772 16 +    141812 CTGCAGCC-----T---CTCAGAG---
s panTro4.chr8              55015242 16 + 143986469 CTGCAGCC-----T---CTCAGAG---
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59082231 16 + 153482349 CTGCAGCC-----T---CTCAGAG---
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8              88454769 16 - 146850525 CTCCAGTC-----T---CTTAGAG---
i macFas5.chr8             C 0 T 152
s ornAna1.Contig1391          113700 16 -    174025 TTACAACC-----TTCGCTCT------
i ornAna1.Contig1391       C 0 C 0
s ficAlb2.chr4A             19370179 21 +  21182716 TCACAGATGTGAAT---CTCACAG---
i ficAlb2.chr4A            C 0 I 2
s pelSin1.JH207030             78746 16 -     84316 CCCCAGCT-----C---CTTGGAG---
i pelSin1.JH207030         C 0 I 2
s oreNil2.chrLG8-24          3785316 16 -  29447820 ---GCGGC-----G---CAGATTGGAA
i oreNil2.chrLG8-24        C 0 C 0
s oryLat2.ultracontig146        3485 16 -    113228 ---TACAG-----T---CTGACAGAGG
i oryLat2.ultracontig146   C 0 C 0
s danRer10.chr6             58381706 16 +  60272633 ---TAGCA-----G---CCAATCAGTG
i danRer10.chr6            C 0 C 0
s astMex1.KB882255             17550 13 -   1586233 ---GAGCC---------TCAATTGG--
i astMex1.KB882255         C 0 C 0
e xenTro7.KB021650          39349939 269 - 150913983 T
e tetNig2.chr10              6379385  0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382  0 -   6649201 I
e hapBur1.JH425491            252157  0 -   1273513 I
e neoBri1.JH422308           3491820  0 -   5414369 I
e araMac1.AOUJ01470298           637  0 -       895 I
e takFla1.AOOT01113665           306  0 +       323 I
e fr3.HE591725                289786  0 -    411779 I
e anoCar2.chr1             148577473  4 + 263920458 I
e pseHum1.KB221294            562602  0 -   1479532 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214  0 -  25666195 I
e allMis1.JH739658             38113 134 -    691381 I
e falPer1.KB390952           2753956  0 -  18327016 I
e falChe1.KB397350           1707310  0 -   3649919 I
e macEug2.GL124958             26121  0 -     59456 I
e galGal4.chr27              2947432  0 +   5209285 I
e geoFor1.JH740018           1736802  0 +   2102797 I
e melGal1.chr7              34310641  0 -  38723565 I
e anaPla1.KB742696           1254472  0 -   1270250 I
e amaVit1.AOCU01222764          1324  0 -      1397 I
e apaSpi1.KB929605            579960  0 +   1015623 I
e cheMyd1.KB605988            134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736  1 +    779542 I
e melUnd1.JH556573            751858  2 +  10614383 I
e taeGut2.chr18              2066377  0 -  11201131 I
e rheMac3.chr8              61690256 4519 + 150158102 T
e chlSab2.chr8              53284695 4759 + 139301422 T

a score=-17585.000000
s hg38.chr8_KI270814v1_alt    112788 13 +    141812 GAGAAACTGGTTG-----
s panTro4.chr8              55015258 13 + 143986469 GAGAAACTGGTTG-----
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59082247 13 + 153482349 GAGAAACTGGTTG-----
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8              88454633 13 - 146850525 GAAACACTGATCA-----
i macFas5.chr8             T 152 C 0
s ornAna1.Contig1391          113716 13 -    174025 GAGGAACTCATTG-----
i ornAna1.Contig1391       C 0 C 0
s ficAlb2.chr4A             19370202  7 +  21182716 GTGAATC-----------
i ficAlb2.chr4A            I 2 C 0
s pelSin1.JH207030             78764 11 -     84316 CTGACACC--CCG-----
i pelSin1.JH207030         I 2 C 0
s oreNil2.chrLG8-24          3785332  8 -  29447820 -----ACCGAATC-----
i oreNil2.chrLG8-24        C 0 C 0
s oryLat2.ultracontig146        3501  8 -    113228 -----AGCAGTAC-----
i oryLat2.ultracontig146   C 0 C 0
s danRer10.chr6             58381722 13 +  60272633 -----AACAGTTGGGTTG
i danRer10.chr6            C 0 C 0
s astMex1.KB882255             17563 10 -   1586233 --------AGGTGACTGG
i astMex1.KB882255         C 0 T 147
e xenTro7.KB021650          39349939 269 - 150913983 T
e tetNig2.chr10              6379385  0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382  0 -   6649201 I
e hapBur1.JH425491            252157  0 -   1273513 I
e neoBri1.JH422308           3491820  0 -   5414369 I
e araMac1.AOUJ01470298           637  0 -       895 I
e takFla1.AOOT01113665           306  0 +       323 I
e fr3.HE591725                289786  0 -    411779 I
e anoCar2.chr1             148577473  4 + 263920458 I
e pseHum1.KB221294            562602  0 -   1479532 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214  0 -  25666195 I
e allMis1.JH739658             38113 134 -    691381 I
e falPer1.KB390952           2753956  0 -  18327016 I
e falChe1.KB397350           1707310  0 -   3649919 I
e macEug2.GL124958             26121  0 -     59456 I
e galGal4.chr27              2947432  0 +   5209285 I
e geoFor1.JH740018           1736802  0 +   2102797 I
e melGal1.chr7              34310641  0 -  38723565 I
e anaPla1.KB742696           1254472  0 -   1270250 I
e amaVit1.AOCU01222764          1324  0 -      1397 I
e apaSpi1.KB929605            579960  0 +   1015623 I
e cheMyd1.KB605988            134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736  1 +    779542 I
e melUnd1.JH556573            751858  2 +  10614383 I
e taeGut2.chr18              2066377  0 -  11201131 I
e rheMac3.chr8              61690256 4519 + 150158102 T
e chlSab2.chr8              53284695 4759 + 139301422 T

a score=-22908.000000
s hg38.chr8_KI270814v1_alt    112801 31 +    141812 TCTTTAGCC------TCTCA----GAAAAGGAATTCACAGT
s panTro4.chr8              55015271 31 + 143986469 TCTTTAGCC------TCTCA----GAAAAGGAATTCACAGT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59082260 31 + 153482349 TCTTTAGCC------TCTCA----GAAAAGGAATTCACAGT
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8              88454646 31 - 146850525 TGTCCATCT------GTTCA----GAGAAGAGAGTCATCAT
i macFas5.chr8             C 0 C 0
s ornAna1.Contig1391          113729 31 -    174025 TTCCCAGCC------TCTAC----TCTGAGGAGCTTGTCTC
i ornAna1.Contig1391       C 0 C 0
s ficAlb2.chr4A             19370209 30 +  21182716 -TCACAGATGTGAA-TCTCA----CAGATGTGAATC-----
i ficAlb2.chr4A            C 0 C 0
s pelSin1.JH207030             78775 31 -     84316 TCCCCAGCT------CCTTG----GAGGCCTGACACCCCGT
i pelSin1.JH207030         C 0 C 0
s oreNil2.chrLG8-24          3785340 34 -  29447820 TCGTATGGC---TGCTCAGA----TGGGAGAGCAGCATCTG
i oreNil2.chrLG8-24        C 0 C 0
s oryLat2.ultracontig146        3509 33 -    113228 TCTGATTAC---AG-TCTGA----CAGAGGAGCAGTACTCT
i oryLat2.ultracontig146   C 0 C 0
s danRer10.chr6             58381735 32 +  60272633 TTATTAGCC---AA-TCAGAAAATAAGATACAACTT-----
i danRer10.chr6            C 0 C 0
s astMex1.KB882255             17426 31 -   1586233 TCCTGAGCC------TCATG----TAGAGGCAACTTGTCCT
i astMex1.KB882255         T 147 C 0
e xenTro7.KB021650          39349939 269 - 150913983 T
e tetNig2.chr10              6379385  0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382  0 -   6649201 I
e hapBur1.JH425491            252157  0 -   1273513 I
e neoBri1.JH422308           3491820  0 -   5414369 I
e araMac1.AOUJ01470298           637  0 -       895 I
e takFla1.AOOT01113665           306  0 +       323 I
e fr3.HE591725                289786  0 -    411779 I
e anoCar2.chr1             148577473  4 + 263920458 I
e pseHum1.KB221294            562602  0 -   1479532 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214  0 -  25666195 I
e allMis1.JH739658             38113 134 -    691381 I
e falPer1.KB390952           2753956  0 -  18327016 I
e falChe1.KB397350           1707310  0 -   3649919 I
e macEug2.GL124958             26121  0 -     59456 I
e galGal4.chr27              2947432  0 +   5209285 I
e geoFor1.JH740018           1736802  0 +   2102797 I
e melGal1.chr7              34310641  0 -  38723565 I
e anaPla1.KB742696           1254472  0 -   1270250 I
e amaVit1.AOCU01222764          1324  0 -      1397 I
e apaSpi1.KB929605            579960  0 +   1015623 I
e cheMyd1.KB605988            134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736  1 +    779542 I
e melUnd1.JH556573            751858  2 +  10614383 I
e taeGut2.chr18              2066377  0 -  11201131 I
e rheMac3.chr8              61690256 4519 + 150158102 T
e chlSab2.chr8              53284695 4759 + 139301422 T

a score=-136099.000000
s hg38.chr8_KI270814v1_alt    112832 108 +    141812 --CTCTAGCA-----TCTCAGAGGACAAACTTATCATC--CTGAGCC-----TCTCAGAGAAGAAACTTACTGTTTCCAGCC-----TCCTAGACA---GAAACTTGCTGT--CTCCAGCCTCTCAGAGGAG
s panTro4.chr8              55015302 108 + 143986469 --CTCTAGCA-----TCTCAGAGGACAAACTTATCATC--CTGAGCC-----TCTCAGAGAAGAAACTTACTGTTTCCAGCC-----TCCTAGACA---GAAACTTGCTGT--CTCCAGCCTCTCAGAGGAG
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59082291 108 + 153482349 --CTCTAGCA-----TCTCAGAGGACAAACTTATCATC--CTGAGCC-----TCTCAGAGAAGAAACTTACTATTTCCAGCC-----TCCTAGACA---GAAACTTGCTAT--CTCCAGCCTCTCAGAGGAG
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8              88454677  73 - 146850525 --GAAAACCC-----TCTCAGAGGAGGATCTTGTTGTTAAAGGAGAC-----TCTCAGAAGAGAAACCTTCTGTTTCCAGCC-----TCT------------------------------------------
i macFas5.chr8             C 0 C 0
s ornAna1.Contig1391          113760  82 -    174025 --TTACATCC-----TCCACTCTGAGGTGCTCATCATT--CGTAGCC-----TCCGCTCTGAGGAGCTCGTCTCGTACAACC-----TCC-------------------------------GCTCTGAGGAG
i ornAna1.Contig1391       C 0 C 0
s ficAlb2.chr4A             19370239 116 +  21182716 --TCACAGATGTGAATCTCACAGATGTGAATC-----T--CACAGATGTGAATCTCACAGATGTGAATC-----TCACAGATGTGAATCTCACAGATGTGAATCTCACAGA--TGTGAATCTCACAGATGTG
i ficAlb2.chr4A            C 0 I 5
s pelSin1.JH207030             78806 109 -     84316 --CCCCAGCT-----CCTTGGAGGCCTGACACCCCGTC--CCCAGCT-----CCTTGGAGGCCTGACACCCCGTCCCCAGCT-----CCTTGGAGGCCTGA--CACCCCGT--CCCCAGCTCCTTGGAGGCC
i pelSin1.JH207030         C 0 I 5
s xenTro7.KB021650          39349670 109 - 150913983 --CTAGAGCC-----TCTTAGAGGTGGATTAGAGATGC--TAGAGCC-----TCTTAGAGGTGGAACAGAGATGCTAGAGCC-----TCTTAGAAG---AGGACTAGAGATG-CTAGAGCCTCTTAGAGGTG
i xenTro7.KB021650         T 269 I 4
s oreNil2.chrLG8-24          3785374  90 -  29447820 GGGAGAGGAC-----GGGGAGTGAACCAGT-CCAGGAA--AACGGAC----ATGCCACCAGGCAGAGACGCTGCTTCCGCCT-----CTGCTGCG----GAG------------TCCAGCGTG---------
i oreNil2.chrLG8-24        C 0 C 0
s oryLat2.ultracontig146        3542 111 -    113228 GATTACAGTC-----TGACAGAGGAGCAGTACTCTGAT--TACAGTC-----TGACAGAGGACCAGTACTCTGATTACAGTC-----TGATAGAG----GAGCAGTACTCTGATTACAGTCTGACAGAGGAG
i oryLat2.ultracontig146   C 0 C 0
s danRer10.chr6             58381767  80 +  60272633 --TCAGTGTC-----GAGCAGAGCGCAGATGGGCTTTT--AGTAGCC-----AATCAGAAAC--------------------------TATGA------------TACAACATTGACAGCCAATCGGAGAAC
i danRer10.chr6            C 0 C 0
s astMex1.KB882255             17457 109 -   1586233 CCTGAGCCTC-----ATGTAGAGGAGACTTGTCCTCCT--GAGCCTC-----AATTGAAGACGATTTACTCTCCTGAGCCTC-----TTGTGAAG----GGGACTTGCTCTCCTGAGCCTCAATTGGAGG--
i astMex1.KB882255         C 0 C 0
e tetNig2.chr10              6379385   0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382   0 -   6649201 I
e hapBur1.JH425491            252157   0 -   1273513 I
e neoBri1.JH422308           3491820   0 -   5414369 I
e araMac1.AOUJ01470298           637   0 -       895 I
e takFla1.AOOT01113665           306   0 +       323 I
e fr3.HE591725                289786   0 -    411779 I
e anoCar2.chr1             148577473   4 + 263920458 I
e pseHum1.KB221294            562602   0 -   1479532 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214   0 -  25666195 I
e allMis1.JH739658             38113 134 -    691381 I
e falPer1.KB390952           2753956   0 -  18327016 I
e falChe1.KB397350           1707310   0 -   3649919 I
e macEug2.GL124958             26121   0 -     59456 I
e galGal4.chr27              2947432   0 +   5209285 I
e geoFor1.JH740018           1736802   0 +   2102797 I
e melGal1.chr7              34310641   0 -  38723565 I
e anaPla1.KB742696           1254472   0 -   1270250 I
e amaVit1.AOCU01222764          1324   0 -      1397 I
e apaSpi1.KB929605            579960   0 +   1015623 I
e cheMyd1.KB605988            134509   0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736   1 +    779542 I
e melUnd1.JH556573            751858   2 +  10614383 I
e taeGut2.chr18              2066377   0 -  11201131 I
e rheMac3.chr8              61690256 4519 + 150158102 T
e chlSab2.chr8              53284695 4759 + 139301422 T

a score=-106681.000000
s hg38.chr8_KI270814v1_alt    112940 66 +    141812 ----AAACGGTCACCAGCCTCTTAGAAGAAGAAAATCTTGCTGTCTCCAGCCTCTTGGAAAAAAAACTGG
s panTro4.chr8              55015410 64 + 143986469 ----AAACGGTCACCAGCCTCTTAGAAGAAGAAAACCTTGCTGTCTCCAGCCTCTTGGAAAAAAA--CGG
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59082399 66 + 153482349 ----AAACGGTCACCAGCCTCTTAGAAGAAGAAAACCTTGCTGTCTCCAGCCTCTTGGAAAAAAAACTGG
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8              88454750 45 - 146850525 ---------GACACTAG----------------GACCTCACCACCTCCAGTCTCTTAGAGAAGAAATTTG
i macFas5.chr8             C 0 C 0
s ornAna1.Contig1391          113842 11 -    174025 ----------------------------------------------CTCGTCTCTTA-------------
i ornAna1.Contig1391       C 0 C 0
s ficAlb2.chr4A             19370360 62 +  21182716 ----CACAGGTCTGAA---TCTCACAGATCTGA-GTCTGGCAGATCCAAATCTCACAGATCTGAGTCTGA
i ficAlb2.chr4A            I 5 C 0
s pseHum1.KB221275           1871016 62 +   2017280 ----CGGACGGCAAAA---TCCTGGAGTGGAAA-ATCCTGTTTATCCCATCCTCCAGGAAAAATAGCTGG
i pseHum1.KB221275         n 0 I 1466
s pelSin1.JH207030             78920 59 -     84316 ----CCCCCGTCCCCAGCTCCTTGGAGGCCTGACACCCCGT---CCCCAGCTCCTTGGA----GGCCTGA
i pelSin1.JH207030         I 5 I 4
s xenTro7.KB021650          39349783 63 - 150913983 ----AGAGATGCAACAGCCTCTTAGAGGTGGAA---CAGAGATGCTACAGCTTCTTAGAGGTGGACTAGA
i xenTro7.KB021650         I 4 C 0
s oreNil2.chrLG8-24          3785464 38 -  29447820 -AACTCTCTCATGCCACCTTTGAAAAGAA-----------------------------AGAGGGGCC--G
i oreNil2.chrLG8-24        C 0 C 0
s oryLat2.ultracontig146        3653 63 -    113228 CAGTACTCTGATTACAGTCTGACAGAGGACCAG---TACTCTGTTTACAGTCTGA--TAGAGGAGCA--G
i oryLat2.ultracontig146   C 0 C 0
s danRer10.chr6             58381847 44 +  60272633 TGATGGGCT-------------TGTAG----------TTGCCAACCAAAA---AATATAATACAACCTTG
i danRer10.chr6            C 0 C 0
s astMex1.KB882255             17566 67 -   1586233 TGACTGGCCCTCCTGAGCCTTATGTAGAGGCAA---CTTGTCCTCCTGAGCCTCATGTAGAGGAGACTTG
i astMex1.KB882255         C 0 C 0
e tetNig2.chr10              6379385  0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382  0 -   6649201 I
e hapBur1.JH425491            252157  0 -   1273513 I
e neoBri1.JH422308           3491820  0 -   5414369 I
e araMac1.AOUJ01470298           637  0 -       895 I
e takFla1.AOOT01113665           306  0 +       323 I
e fr3.HE591725                289786  0 -    411779 I
e anoCar2.chr1             148577473  4 + 263920458 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214  0 -  25666195 I
e allMis1.JH739658             38113 134 -    691381 I
e falPer1.KB390952           2753956  0 -  18327016 I
e falChe1.KB397350           1707310  0 -   3649919 I
e macEug2.GL124958             26121  0 -     59456 I
e galGal4.chr27              2947432  0 +   5209285 I
e geoFor1.JH740018           1736802  0 +   2102797 I
e melGal1.chr7              34310641  0 -  38723565 I
e anaPla1.KB742696           1254472  0 -   1270250 I
e amaVit1.AOCU01222764          1324  0 -      1397 I
e apaSpi1.KB929605            579960  0 +   1015623 I
e cheMyd1.KB605988            134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736  1 +    779542 I
e melUnd1.JH556573            751858  2 +  10614383 I
e taeGut2.chr18              2066377  0 -  11201131 I
e rheMac3.chr8              61690256 4519 + 150158102 T
e chlSab2.chr8              53284695 4759 + 139301422 T

a score=-62921.000000
s hg38.chr8_KI270814v1_alt    113006 61 +    141812 CCAT----CTCC----AG--CCT-----CTGAGAAGA-------------GGACCTCATTGTCTTCAGCC-----TCTCA---------GAAAAAGAACTCAC
s panTro4.chr8              55015474 61 + 143986469 CCAT----CTCC----AG--CCT-----CTGAGAAGA-------------GGACCTCATTGTCTTCAGCC-----TCTCA---------GAAAAAGAACTCAC
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59082465 61 + 153482349 CCAT----CTCC----AG--CCT-----CTGAGAAGA-------------GGACCTCATTGTCTTCAGCC-----TCTCA---------GAAAAAGAGCTCAC
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8              88454795 61 - 146850525 CCAT----GTCA----AG--CCT-----CTCAGAAAA-------------GTACATCAGGGTCCTCAGCC-----TCTCA---------CAGGAGAAACTCAC
i macFas5.chr8             C 0 C 0
s ornAna1.Contig1391          113853 54 -    174025 -----------C----AA--CCT-----CTGCTCTGA-------------GGAACTCATTGTTCATAGCC-----TCTGC---------TCTGAGGAGCTTGT
i ornAna1.Contig1391       C 0 C 0
s ficAlb2.chr4A             19370422 59 +  21182716 -----------C----AG--ATCCAAATCTCACAGGT-------------CTGAATC-----TCACAGATGTGAATCTCA---------CAGATATGAATCTC
i ficAlb2.chr4A            C 0 C 0
s pelSin1.JH207030             78983 61 -     84316 CCGT----CCCC----AG--CTC-----CTTGGAGGC-------------CTGACACCCCGTCCCCAGCT-----CCTTG---------GAGGCCTGACACCC
i pelSin1.JH207030         I 4 C 0
s xenTro7.KB021650          39349846 61 - 150913983 -GATG---CTAT----AG--CCT-----CTTAGAGGT-------------GGACTAGAGATGCTACGGCC-----TCTTA---------GAGGTGGACTAGAG
i xenTro7.KB021650         C 0 C 0
s oreNil2.chrLG8-24          3785502 63 -  29447820 ----GCCCCCTA----AG--ACT-----CCCACAAGACTACCTGAACTTGACAACACATCGACCACATCC-----CCACA---------TCC-----------
i oreNil2.chrLG8-24        C 0 C 0
s oryLat2.ultracontig146        3716 63 -    113228 ----TACTCTGATTACAG--ACT-----GACAGAGGA-------------GCAGTACTCTGATTACAGTC-----TGACAGAGGACCAGTAC-----------
i oryLat2.ultracontig146   C 0 C 0
s danRer10.chr6             58381891 45 +  60272633 ----AC----------AG--TCA-----ATCAGAGGA-------------CATATGCAATGTCAATAACC-----AATCA---------GAAA----------
i danRer10.chr6            C 0 C 0
s astMex1.KB882255             17633 61 -   1586233 ----TCCTCCTG----AGCCTCA-----ATTGAAGAA-------------GATTTAC--TCTCCTGAGCC-----TCTTG---------TGAAGGGGACTTGC
i astMex1.KB882255         C 0 I 150
e tetNig2.chr10              6379385  0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382  0 -   6649201 I
e hapBur1.JH425491            252157  0 -   1273513 I
e neoBri1.JH422308           3491820  0 -   5414369 I
e araMac1.AOUJ01470298           637  0 -       895 I
e takFla1.AOOT01113665           306  0 +       323 I
e fr3.HE591725                289786  0 -    411779 I
e anoCar2.chr1             148577473  4 + 263920458 I
e pseHum1.KB221275           1871078 1466 +   2017280 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214  0 -  25666195 I
e allMis1.JH739658             38113 134 -    691381 I
e falPer1.KB390952           2753956  0 -  18327016 I
e falChe1.KB397350           1707310  0 -   3649919 I
e macEug2.GL124958             26121  0 -     59456 I
e galGal4.chr27              2947432  0 +   5209285 I
e geoFor1.JH740018           1736802  0 +   2102797 I
e melGal1.chr7              34310641  0 -  38723565 I
e anaPla1.KB742696           1254472  0 -   1270250 I
e amaVit1.AOCU01222764          1324  0 -      1397 I
e apaSpi1.KB929605            579960  0 +   1015623 I
e cheMyd1.KB605988            134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736  1 +    779542 I
e melUnd1.JH556573            751858  2 +  10614383 I
e taeGut2.chr18              2066377  0 -  11201131 I
e rheMac3.chr8              61690256 4519 + 150158102 T
e chlSab2.chr8              53284695 4759 + 139301422 T

a score=-28741.000000
s hg38.chr8_KI270814v1_alt    113067 29 +    141812 CAACTCCATCCTCTCAGAGGAAGAACTCA
s panTro4.chr8              55015535 29 + 143986469 CAACTCCATCCTCTCAGAGGAAGAACTCA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59082526 29 + 153482349 CAACTCCATCCTCTCAGAGGAGGAACTCA
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8              88454856 29 - 146850525 CATGTCCAGCCTCTCAGACTAAGACCTTG
i macFas5.chr8             C 0 C 0
s ornAna1.Contig1391          113907 29 -    174025 CTCTTACATCCTCCACTCTGAGGAGCTCA
i ornAna1.Contig1391       C 0 C 0
s ficAlb2.chr4A             19370481 29 +  21182716 ACAGGTCTGAATCTCACAGATGTGAATCT
i ficAlb2.chr4A            C 0 I 5
s pelSin1.JH207030             79044 29 -     84316 CGTCCCCAGCTCCTTGGAGGCCTGACACC
i pelSin1.JH207030         C 0 C 0
s xenTro7.KB021650          39349907 20 - 150913983 ATGCTACAGCCTCTTAGAGG---------
i xenTro7.KB021650         C 0 C 0
s oreNil2.chrLG8-24          3785565 28 -  29447820 CATCTCGGCAATTGAGGAAGGAAACCCG-
i oreNil2.chrLG8-24        C 0 C 0
s oryLat2.ultracontig146        3779 28 -    113228 TCTGTTTACAGTCTGATAGAGGAGCAGT-
i oryLat2.ultracontig146   C 0 C 0
s danRer10.chr6             58381936 10 +  60272633 ----------GTAAGATACA---------
i danRer10.chr6            C 0 C 0
s astMex1.KB882255             17844 12 -   1586233 --------CCGTCTCAGAAG---------
i astMex1.KB882255         I 150 C 0
e tetNig2.chr10              6379385  0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382  0 -   6649201 I
e hapBur1.JH425491            252157  0 -   1273513 I
e neoBri1.JH422308           3491820  0 -   5414369 I
e araMac1.AOUJ01470298           637  0 -       895 I
e takFla1.AOOT01113665           306  0 +       323 I
e fr3.HE591725                289786  0 -    411779 I
e anoCar2.chr1             148577473  4 + 263920458 I
e pseHum1.KB221275           1871078 1466 +   2017280 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214  0 -  25666195 I
e allMis1.JH739658             38113 134 -    691381 I
e falPer1.KB390952           2753956  0 -  18327016 I
e falChe1.KB397350           1707310  0 -   3649919 I
e macEug2.GL124958             26121  0 -     59456 I
e galGal4.chr27              2947432  0 +   5209285 I
e geoFor1.JH740018           1736802  0 +   2102797 I
e melGal1.chr7              34310641  0 -  38723565 I
e anaPla1.KB742696           1254472  0 -   1270250 I
e amaVit1.AOCU01222764          1324  0 -      1397 I
e apaSpi1.KB929605            579960  0 +   1015623 I
e cheMyd1.KB605988            134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736  1 +    779542 I
e melUnd1.JH556573            751858  2 +  10614383 I
e taeGut2.chr18              2066377  0 -  11201131 I
e rheMac3.chr8              61690256 4519 + 150158102 T
e chlSab2.chr8              53284695 4759 + 139301422 T

a score=-11267.000000
s hg38.chr8_KI270814v1_alt    113096 16 +    141812 CCATATCCAG----CCAATC
s panTro4.chr8              55015564 16 + 143986469 CCGTATCCAG----CCAATC
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59082555 16 + 153482349 CCATATCCAG----CCACTC
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8              88454885  4 - 146850525 CTGT----------------
i macFas5.chr8             C 0 C 0
s ornAna1.Contig1391          113936 19 -    174025 TCATTCGCAG-CCTCCACTC
i ornAna1.Contig1391       C 0 C 0
s oreNil2.chrLG8-24          3785593 16 -  29447820 ----CCACTGTCCCCTAAAC
i oreNil2.chrLG8-24        C 0 I 1
s oryLat2.ultracontig146        3807 16 -    113228 ----ACTCTGATTACAGACT
i oryLat2.ultracontig146   C 0 I 1
s danRer10.chr6             58381946 16 +  60272633 ----ACATTGACAACCAATC
i danRer10.chr6            C 0 C 0
s astMex1.KB882255             17856 16 -   1586233 ----ATGTTGATCTCTCATC
i astMex1.KB882255         C 0 I 1
e xenTro7.KB021650          39349927  0 - 150913983 C
e tetNig2.chr10              6379385  0 +  13272281 I
e punNye1.JH419232           4767720 338 +   5065651 T
e mayZeb1.JH720522            609382  0 -   6649201 I
e hapBur1.JH425491            252157  0 -   1273513 I
e neoBri1.JH422308           3491820  0 -   5414369 I
e araMac1.AOUJ01470298           637  0 -       895 I
e takFla1.AOOT01113665           306  0 +       323 I
e fr3.HE591725                289786  0 -    411779 I
e ficAlb2.chr4A             19370510  5 +  21182716 I
e anoCar2.chr1             148577473  4 + 263920458 I
e pseHum1.KB221275           1871078 1466 +   2017280 I
e zonAlb1.KB913045          12582000 6532 +  16390125 T
e colLiv1.KB375528           5867214  0 -  25666195 I
e allMis1.JH739658             38113 134 -    691381 I
e falPer1.KB390952           2753956  0 -  18327016 I
e falChe1.KB397350           1707310  0 -   3649919 I
e macEug2.GL124958             26121  0 -     59456 I
e galGal4.chr27              2947432  0 +   5209285 I
e geoFor1.JH740018           1736802  0 +   2102797 I
e melGal1.chr7              34310641  0 -  38723565 I
e anaPla1.KB742696           1254472  0 -   1270250 I
e amaVit1.AOCU01222764          1324  0 -      1397 I
e apaSpi1.KB929605            579960  0 +   1015623 I
e cheMyd1.KB605988            134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1    105736  1 +    779542 I
e pelSin1.JH207030             79073  0 -     84316 C
e melUnd1.JH556573            751858  2 +  10614383 I
e taeGut2.chr18              2066377  0 -  11201131 I
e rheMac3.chr8              61690256 4519 + 150158102 T
e chlSab2.chr8              53284695 4759 + 139301422 T

a score=-56080.000000
s hg38.chr8_KI270814v1_alt      113112 14 +    141812 ACA---------------------------------GAGACTCACAC
s panTro4.chr8                55015580 14 + 143986469 ACA---------------------------------GAGACTCACAC
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59082571 47 + 153482349 ACAGGAGGACCTTGCTATCTCCAACTGCTCAGAAATGAGACTCTCAC
i ponAbe2.chr8               C 0 C 0
s ornAna1.Contig1391            113955 14 -    174025 TGA---------------------------------GGAGCTCGTCT
i ornAna1.Contig1391         C 0 C 0
s ficAlb2.chr4A               19370515 15 +  21182716 --------------------------------ATATGAATCTCACAG
i ficAlb2.chr4A              I 5 C 0
s galGal4.chrUn_AADN03023623      1380 15 -      5081 --------------------------------CCACCTCTCCCCCAT
i galGal4.chrUn_AADN03023623 n 0 C 0
s xenTro7.KB021650            39349927 12 - 150913983 -----------------------------------TTGACTAGAGAT
i xenTro7.KB021650           C 0 C 0
s oreNil2.chrLG8-24            3785610 14 -  29447820 ------------------------------TAAGAGGGGTCGTC---
i oreNil2.chrLG8-24          I 1 I 22
s oryLat2.ultracontig146          3824 14 -    113228 ------------------------------ACAGAGGAGCAGTA---
i oryLat2.ultracontig146     I 1 I 8
s gasAcu1.chrXI                 298318  9 -  16706052 ------------------------------ACAGA-----CTTA---
i gasAcu1.chrXI              N 0 I 3
s danRer10.chr6               58381962 14 +  60272633 ------------------------------AAAGCGCAGGTGGG---
i danRer10.chr6              C 0 C 0
e tetNig2.chr10                6379385  0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382  0 -   6649201 I
e hapBur1.JH425491              252157  0 -   1273513 I
e neoBri1.JH422308             3491820  0 -   5414369 I
e araMac1.AOUJ01470298             637  0 -       895 I
e astMex1.KB882255               17872  1 -   1586233 I
e takFla1.AOOT01113665             306  0 +       323 I
e fr3.HE591725                  289786  0 -    411779 I
e anoCar2.chr1               148577473  4 + 263920458 I
e pseHum1.KB221275             1871078 1466 +   2017280 I
e zonAlb1.KB913045            12582000 6532 +  16390125 T
e colLiv1.KB375528             5867214  0 -  25666195 I
e allMis1.JH739658               38113 134 -    691381 I
e falPer1.KB390952             2753956  0 -  18327016 I
e falChe1.KB397350             1707310  0 -   3649919 I
e macEug2.GL124958               26121  0 -     59456 I
e geoFor1.JH740018             1736802  0 +   2102797 I
e melGal1.chr7                34310641  0 -  38723565 I
e anaPla1.KB742696             1254472  0 -   1270250 I
e amaVit1.AOCU01222764            1324  0 -      1397 I
e apaSpi1.KB929605              579960  0 +   1015623 I
e cheMyd1.KB605988              134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1      105736  1 +    779542 I
e pelSin1.JH207030               79073  0 -     84316 C
e melUnd1.JH556573              751858  2 +  10614383 I
e taeGut2.chr18                2066377  0 -  11201131 I
e rheMac3.chr8                61690256 4519 + 150158102 T
e macFas5.chr8                88454889  0 - 146850525 C
e chlSab2.chr8                53284695 4759 + 139301422 T

a score=-918.000000
s hg38.chr8_KI270814v1_alt      113126 3 +    141812 TCC
s panTro4.chr8                55015594 3 + 143986469 TCC
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59082618 3 + 153482349 TCC
i ponAbe2.chr8               C 0 C 0
s ornAna1.Contig1391            113969 3 -    174025 CTT
i ornAna1.Contig1391         C 0 C 0
s ficAlb2.chr4A               19370530 3 +  21182716 GTC
i ficAlb2.chr4A              C 0 C 0
s galGal4.chrUn_AADN03023623      1395 3 -      5081 TGC
i galGal4.chrUn_AADN03023623 C 0 C 0
s xenTro7.KB021650            39349939 3 - 150913983 GCT
i xenTro7.KB021650           C 0 C 0
s oreNil2.chrLG8-24            3785646 3 -  29447820 GCT
i oreNil2.chrLG8-24          I 22 C 0
s gasAcu1.chrXI                 298330 1 -  16706052 --T
i gasAcu1.chrXI              I 3 I 1
s danRer10.chr6               58381976 1 +  60272633 --T
i danRer10.chr6              C 0 I 4
e tetNig2.chr10                6379385 0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382 0 -   6649201 I
e hapBur1.JH425491              252157 0 -   1273513 I
e neoBri1.JH422308             3491820 0 -   5414369 I
e araMac1.AOUJ01470298             637 0 -       895 I
e astMex1.KB882255               17872 1 -   1586233 I
e oryLat2.ultracontig146          3838 8 -    113228 I
e takFla1.AOOT01113665             306 0 +       323 I
e fr3.HE591725                  289786 0 -    411779 I
e anoCar2.chr1               148577473 4 + 263920458 I
e pseHum1.KB221275             1871078 1466 +   2017280 I
e zonAlb1.KB913045            12582000 6532 +  16390125 T
e colLiv1.KB375528             5867214 0 -  25666195 I
e allMis1.JH739658               38113 134 -    691381 I
e falPer1.KB390952             2753956 0 -  18327016 I
e falChe1.KB397350             1707310 0 -   3649919 I
e macEug2.GL124958               26121 0 -     59456 I
e geoFor1.JH740018             1736802 0 +   2102797 I
e melGal1.chr7                34310641 0 -  38723565 I
e anaPla1.KB742696             1254472 0 -   1270250 I
e amaVit1.AOCU01222764            1324 0 -      1397 I
e apaSpi1.KB929605              579960 0 +   1015623 I
e cheMyd1.KB605988              134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1      105736 1 +    779542 I
e pelSin1.JH207030               79073 0 -     84316 C
e melUnd1.JH556573              751858 2 +  10614383 I
e taeGut2.chr18                2066377 0 -  11201131 I
e rheMac3.chr8                61690256 4519 + 150158102 T
e macFas5.chr8                88454889 0 - 146850525 C
e chlSab2.chr8                53284695 4759 + 139301422 T

a score=-25082.000000
s hg38.chr8_KI270814v1_alt      113129 15 +    141812 CCA--------------GCCTCTCA--GAGG
s panTro4.chr8                55015597 15 + 143986469 CCA--------------GCCTCTCA--GAGG
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59082621 15 + 153482349 CCA--------------GCCTCTCA--GAGG
i ponAbe2.chr8               C 0 C 0
s ornAna1.Contig1391            113972 15 -    174025 ACA--------------ACCTCCGC--TCTG
i ornAna1.Contig1391         C 0 C 0
s ficAlb2.chr4A               19370533 15 +  21182716 TGA--------------ATCTCACA--GATG
i ficAlb2.chr4A              C 0 I 1
s galGal4.chrUn_AADN03023623      1398 27 -      5081 TGATGGACTCCGT--CCATCTCTCA--GCCA
i galGal4.chrUn_AADN03023623 C 0 I 10
s pelSin1.JH207030               79073 20 -     84316 ---------CCGTCCCCAGCTCCTT--GGAG
i pelSin1.JH207030           C 0 I 4
s xenTro7.KB021650            39349942 15 - 150913983 ACA--------------GCCTCTTA--GAGG
i xenTro7.KB021650           C 0 C 0
s oreNil2.chrLG8-24            3785649 17 -  29447820 AGA--------------GACCGTTAATGAGA
i oreNil2.chrLG8-24          C 0 C 0
s oryLat2.ultracontig146          3846 15 -    113228 ACA--------------GTCTGACA--GAGG
i oryLat2.ultracontig146     I 8 C 0
s gasAcu1.chrXI                 298332 12 -  16706052 --A--------------GTCAAAAA--GGG-
i gasAcu1.chrXI              I 1 C 0
s danRer10.chr6               58381981 15 +  60272633 AGT--------------AGCTAATG--AGAA
i danRer10.chr6              I 4 C 0
s astMex1.KB882255               17873 15 -   1586233 TGA--------------GCCTCATT--TGAA
i astMex1.KB882255           I 1 C 0
e tetNig2.chr10                6379385  0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382  0 -   6649201 I
e hapBur1.JH425491              252157  0 -   1273513 I
e neoBri1.JH422308             3491820  0 -   5414369 I
e araMac1.AOUJ01470298             637  0 -       895 I
e takFla1.AOOT01113665             306  0 +       323 I
e fr3.HE591725                  289786  0 -    411779 I
e anoCar2.chr1               148577473  4 + 263920458 I
e pseHum1.KB221275             1871078 1466 +   2017280 I
e zonAlb1.KB913045            12582000 6532 +  16390125 T
e colLiv1.KB375528             5867214  0 -  25666195 I
e allMis1.JH739658               38113 134 -    691381 I
e falPer1.KB390952             2753956  0 -  18327016 I
e falChe1.KB397350             1707310  0 -   3649919 I
e macEug2.GL124958               26121  0 -     59456 I
e geoFor1.JH740018             1736802  0 +   2102797 I
e melGal1.chr7                34310641  0 -  38723565 I
e anaPla1.KB742696             1254472  0 -   1270250 I
e amaVit1.AOCU01222764            1324  0 -      1397 I
e apaSpi1.KB929605              579960  0 +   1015623 I
e cheMyd1.KB605988              134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1      105736  1 +    779542 I
e melUnd1.JH556573              751858  2 +  10614383 I
e taeGut2.chr18                2066377  0 -  11201131 I
e rheMac3.chr8                61690256 4519 + 150158102 T
e macFas5.chr8                88454889  0 - 146850525 C
e chlSab2.chr8                53284695 4759 + 139301422 T

a score=1927.000000
s hg38.chr8_KI270814v1_alt      113144 2 +    141812 AG
s panTro4.chr8                55015612 2 + 143986469 AG
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59082636 2 + 153482349 AG
i ponAbe2.chr8               C 0 C 0
s ornAna1.Contig1391            113987 2 -    174025 AG
i ornAna1.Contig1391         C 0 C 0
s xenTro7.KB021650            39349957 2 - 150913983 TG
i xenTro7.KB021650           C 0 I 156
s oreNil2.chrLG8-24            3785666 2 -  29447820 GC
i oreNil2.chrLG8-24          C 0 C 0
s oryLat2.ultracontig146          3861 2 -    113228 AG
i oryLat2.ultracontig146     C 0 C 0
s danRer10.chr6               58381996 2 +  60272633 AG
i danRer10.chr6              C 0 C 0
s astMex1.KB882255               17888 2 -   1586233 GG
i astMex1.KB882255           C 0 C 0
e gasAcu1.chrXI                 298344 0 -  16706052 C
e tetNig2.chr10                6379385 0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382 0 -   6649201 I
e hapBur1.JH425491              252157 0 -   1273513 I
e neoBri1.JH422308             3491820 0 -   5414369 I
e araMac1.AOUJ01470298             637 0 -       895 I
e takFla1.AOOT01113665             306 0 +       323 I
e fr3.HE591725                  289786 0 -    411779 I
e ficAlb2.chr4A               19370548 1 +  21182716 I
e anoCar2.chr1               148577473 4 + 263920458 I
e pseHum1.KB221275             1871078 1466 +   2017280 I
e zonAlb1.KB913045            12582000 6532 +  16390125 T
e colLiv1.KB375528             5867214 0 -  25666195 I
e allMis1.JH739658               38113 134 -    691381 I
e falPer1.KB390952             2753956 0 -  18327016 I
e falChe1.KB397350             1707310 0 -   3649919 I
e macEug2.GL124958               26121 0 -     59456 I
e galGal4.chrUn_AADN03023623      1425 10 -      5081 I
e geoFor1.JH740018             1736802 0 +   2102797 I
e melGal1.chr7                34310641 0 -  38723565 I
e anaPla1.KB742696             1254472 0 -   1270250 I
e amaVit1.AOCU01222764            1324 0 -      1397 I
e apaSpi1.KB929605              579960 0 +   1015623 I
e cheMyd1.KB605988              134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1      105736 1 +    779542 I
e pelSin1.JH207030               79093 4 -     84316 I
e melUnd1.JH556573              751858 2 +  10614383 I
e taeGut2.chr18                2066377 0 -  11201131 I
e rheMac3.chr8                61690256 4519 + 150158102 T
e macFas5.chr8                88454889 0 - 146850525 C
e chlSab2.chr8                53284695 4759 + 139301422 T

a score=-335811.000000
s hg38.chr8_KI270814v1_alt      113146  86 +    141812 -AGACTCACTGTCTTC-GCCTCT--CAGAGAAAAAACTCACTGTCTCCAGCCTCTCAGA-------------------AAAGA----------A--------------A----CTAAC-CATCT------CCGGTCTCTTGCAG
s panTro4.chr8                55015614  86 + 143986469 -AGACTCACTGTCTTC-GCCTCT--CAGAGAAAAAACTCACTGTCTCCAGCCTCTCAGA-------------------AAAGA----------A--------------A----CTAAC-CATCT------CCGGTCTCTTGCAG
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59082638  86 + 153482349 -AGACTCACTGTCTTC-GCCTCT--CAGAGAAAAAACTCACTGTCTCCAGCCTCTCAGA-------------------AAAGA----------A--------------A----CTAAC-CATCT------CTGGTCTCTTGCAG
i ponAbe2.chr8               C 0 C 0
s macFas5.chr8                88454889  76 - 146850525 --------CTGTCTCCTGCCTCT--CAGAGAAAGAAGTCA---TCACCAGCCTCTCAGA-------------------GGAGC----------A--------------C----TTCGTGGATCT------TCCG--TCCTGGAG
i macFas5.chr8               C 0 C 0
s ornAna1.Contig1391            113989  86 -    174025 -GAACTCATTGTTCATAGCCTCTGCTTGAGGAGCTTGTCTCTTACATCCTCCACTCTGA-------------------GGAG-------------------------------CTCAT-CATTC------GTAGCCTCCGCTCT
i ornAna1.Contig1391         C 0 C 0
s ficAlb2.chr4A               19370549  88 +  21182716 --GAATCTCACAGATCTGAATCT--CACAGGGCTGAATTTCACAGATCTGAATCTCACA-----------------GATGTGA----------A--------------T----CTCAC-AGATA------TGAATCTCACAGGT
i ficAlb2.chr4A              I 1 C 0
s geoFor1.JH740417               46831  83 -     63145 --GGATTTCTTCCTTTCTATCCT--TAAACCAAGGAATTTCATCTTTTCCATCCTTAAA-----------------CCAAGGA----------A--------------T----TTCAT-C-CTT------TCCATC---CAAG-
i geoFor1.JH740417           n 0 C 0
s galGal4.chrUn_AADN03023623      1435  36 -      5081 --ACATTTCCCACCTCTCCCCCA--CAGCGTGCAGATTTT--------------------------------------------------------------------------------------------------------
i galGal4.chrUn_AADN03023623 I 10 C 0
s pelSin1.JH207030               79097 106 -     84316 --GACACCCCGTCCCCAGCTCCT--TGGAGGCCTGACACCCCGTCCCCAGCTCCTTGGAGGCCTGACACCCCGGGTGAAATGA----------ACCACGGTCCCTCTTT----CCCAT-CGTTC------T-------------
i pelSin1.JH207030           I 4 C 0
s xenTro7.KB021650            39350115  81 - 150913983 -------AGATGCTACAGCCTCT--TAGAGGTGGACTAGAGATGCTACAGCCTCTTAGA-------------------GGTGG----------A--------------C----TAGAG-ATGCT------ACAGCCTCTTAGAG
i xenTro7.KB021650           I 156 C 0
s oreNil2.chrLG8-24            3785668  67 -  29447820 CAGAAC-----TCTGA--TCTAT--CAAAAA---------------CTGATTCCAGGAC---------------------AGA----------A--------------C-----TGAC-GATCT--CAGAGACCCCGCCTCCTG
i oreNil2.chrLG8-24          C 0 I 12
s oryLat2.ultracontig146          3863  70 -    113228 CAGTAC-----TCTG------AT--TACAGT---------------CTGACAGAGGACC---------------------AGT----------A--------------CTCTGATTAC-AGTCTGACAGAGGAGCAGTACTCTG
i oryLat2.ultracontig146     C 0 I 21
s gasAcu1.chrXI                 298344  50 -  16706052 ---------------------TT--CACGTC---------------TGGGGTCCTCAGG---------------------AGA----------A--------------C----ATGAT-CGTCT------GGAGTCCTCCTCGG
i gasAcu1.chrXI              C 0 I 6
s danRer10.chr6               58381998  94 +  60272633 TAATATATACAGTTGACAGCCAT--TAAAAAAAAGTTGGGCTGTCATTAACCAATCAAA---------------------AAGTAAGATGCAAA--------------C----TTGAC-AGCCAATCAGA--------GCACAG
i danRer10.chr6              C 0 C 0
s astMex1.KB882255               17890  85 -   1586233 TAACTTGTCTTCCTGAGTCTCGT--AAGGATGTACTTTGTCCTGC-TCAGTC--TCAAA---------------------AGG----------A--------------C----TTAAC-TTCATCTCAGA----TTTCTTGCAA
i astMex1.KB882255           C 0 C 0
e tetNig2.chr10                6379385   0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382   0 -   6649201 I
e hapBur1.JH425491              252157   0 -   1273513 I
e neoBri1.JH422308             3491820   0 -   5414369 I
e araMac1.AOUJ01470298             637   0 -       895 I
e takFla1.AOOT01113665             306   0 +       323 I
e fr3.HE591725                  289786   0 -    411779 I
e anoCar2.chr1               148577473   4 + 263920458 I
e pseHum1.KB221275             1871078 1466 +   2017280 I
e zonAlb1.KB913045            12582000 6532 +  16390125 T
e colLiv1.KB375528             5867214   0 -  25666195 I
e allMis1.JH739658               38113 134 -    691381 I
e falPer1.KB390952             2753956   0 -  18327016 I
e falChe1.KB397350             1707310   0 -   3649919 I
e macEug2.GL124958               26121   0 -     59456 I
e melGal1.chr7                34310641   0 -  38723565 I
e anaPla1.KB742696             1254472   0 -   1270250 I
e amaVit1.AOCU01222764            1324   0 -      1397 I
e apaSpi1.KB929605              579960   0 +   1015623 I
e cheMyd1.KB605988              134509   0 +    155857 I
e chrPic2.chrUn_KK083223v1      105736   1 +    779542 I
e melUnd1.JH556573              751858   2 +  10614383 I
e taeGut2.chr18                2066377   0 -  11201131 I
e rheMac3.chr8                61690256 4519 + 150158102 T
e chlSab2.chr8                53284695 4759 + 139301422 T

a score=9467.000000
s hg38.chr8_KI270814v1_alt      113232 8 +    141812 AGGGATCT
s panTro4.chr8                55015700 8 + 143986469 AGGGATCT
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59082724 8 + 153482349 GGGGATCT
i ponAbe2.chr8               C 0 C 0
s macFas5.chr8                88454965 8 - 146850525 GTAAAATT
i macFas5.chr8               C 0 C 0
s ornAna1.Contig1391            114075 8 -    174025 GAGGAGCT
i ornAna1.Contig1391         C 0 C 0
s ficAlb2.chr4A               19370637 8 +  21182716 CTGAATCT
i ficAlb2.chr4A              C 0 C 0
s geoFor1.JH740417               46914 6 -     63145 --GAATTT
i geoFor1.JH740417           C 0 C 0
s xenTro7.KB021650            39350196 8 - 150913983 GTGGATTA
i xenTro7.KB021650           C 0 C 0
s fr3.chr10                    9063480 8 +   9126174 AGGAATCT
i fr3.chr10                  n 0 C 0
s takFla1.KE121866              208708 8 +    220559 AGGAATCT
i takFla1.KE121866           n 0 C 0
s oreNil2.chrLG8-24            3785747 8 -  29447820 AAATGACT
i oreNil2.chrLG8-24          I 12 C 0
s oryLat2.ultracontig146          3954 8 -    113228 AGTACTCT
i oryLat2.ultracontig146     I 21 C 0
s gasAcu1.chrXI                 298400 8 -  16706052 ATGAACGT
i gasAcu1.chrXI              I 6 C 0
e danRer10.chr6               58382092 0 +  60272633 C
e tetNig2.chr10                6379385 0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382 0 -   6649201 I
e hapBur1.JH425491              252157 0 -   1273513 I
e neoBri1.JH422308             3491820 0 -   5414369 I
e araMac1.AOUJ01470298             637 0 -       895 I
e astMex1.KB882255               17975 0 -   1586233 C
e anoCar2.chr1               148577473 4 + 263920458 I
e pseHum1.KB221275             1871078 1466 +   2017280 I
e zonAlb1.KB913045            12582000 6532 +  16390125 T
e colLiv1.KB375528             5867214 0 -  25666195 I
e allMis1.JH739658               38113 134 -    691381 I
e falPer1.KB390952             2753956 0 -  18327016 I
e falChe1.KB397350             1707310 0 -   3649919 I
e macEug2.GL124958               26121 0 -     59456 I
e galGal4.chrUn_AADN03023623      1471 0 -      5081 C
e melGal1.chr7                34310641 0 -  38723565 I
e anaPla1.KB742696             1254472 0 -   1270250 I
e amaVit1.AOCU01222764            1324 0 -      1397 I
e apaSpi1.KB929605              579960 0 +   1015623 I
e cheMyd1.KB605988              134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1      105736 1 +    779542 I
e pelSin1.JH207030               79203 0 -     84316 C
e melUnd1.JH556573              751858 2 +  10614383 I
e taeGut2.chr18                2066377 0 -  11201131 I
e rheMac3.chr8                61690256 4519 + 150158102 T
e chlSab2.chr8                53284695 4759 + 139301422 T

a score=-473573.000000
s hg38.chr8_KI270814v1_alt      113240  64 +    141812 CAC-------------TATCTCCAGCCTCTC---------------------A--CAGGG----------GGACTTCA----------------------TGT-----CTCT---AGCC------------TC-----TC-ACA---GGATGA-----------CCTCACTT
s panTro4.chr8                55015708  64 + 143986469 CAC-------------TATCTCCAGCCTCTT---------------------A--CAGGG----------GGACTTAA----------------------TGT-----CTCT---AGCC------------TC-----TC-ACA---GGATGA-----------CCTCACTT
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59082732  64 + 153482349 CAC-------------TATCTCCAGCCTCTC---------------------A--CAGGG----------GGACTTCA----------------------TGT-----CTCT---AGCC------------TC-----TC-ACA---GGATGA-----------CCTCACTT
i ponAbe2.chr8               C 0 C 0
s macFas5.chr8                88454973  62 - 146850525 CAC-------------CACCTCCAGACTCTT--------------------------GGA----------GAACCTCA---------T------------TGT-----CTCT---GGCC------------TT-----TC-AGG---GAAGCA-----------GCTCACTT
i macFas5.chr8               C 0 C 0
s ornAna1.Contig1391            114083  65 -    174025 CGT-------------CTCTTACAACCTCCG---------------------C--TCTGA----------GGAGCTCG---------T------------TGT-----TCCC---AGCC------------TC-----TA-CTC---TGAGGA-----------GCTTGTCT
i ornAna1.Contig1391         C 0 C 0
s ficAlb2.chr4A               19370645  65 +  21182716 CAC--------------AGATGTGAATC---------------------------TCACA-----GATATGAATCTCA---------C------------AGG-----TCTG---AATC------------TC-----AC-AGATGTGAATCT-----------CACAG---
i ficAlb2.chr4A              C 0 I 24
s geoFor1.JH740417               46920  61 -     63145 ------------------CATCTTCATCCTT---------------------AAACCAAG----------GAATTTCA---------T------------CCT-----TTCC---ACCC------------TTA--AACC-AAG---GAATTT-----------CATC----
i geoFor1.JH740417           C 0 I 25
s taeGut2.chrUn_EQ837326          1058  62 -      4984 CA---------------GTCCCTAAATCCTT------------------------CCACA----------GGATCCCA---------C------------CAG-----TCACCAAATCC------------TT-----CT-ACA---GGATCC-----------CACCA---
i taeGut2.chrUn_EQ837326     n 0 I 24
s galGal4.chrUn_AADN03023623      1471  75 -      5081 --------------------TCCCATTCCTC------------------------CCCCATTACTGATG-GAATCCTC---------CATCACTTTTGGACGT-----TTCC---CACC------------TC-----TC-ACC---CATTAC-----------CAACG---
i galGal4.chrUn_AADN03023623 C 0 I 38
s pelSin1.JH207030               79203  70 -     84316 --------------------CCTGAGTTCCT---------------------G--CTGCA-------TGTGAGATCGA---------C-----TCAGGGGCCT-----GTCC---CACC------------TCAGCGCCC-AGG---CAGGTT-----------CTCTG---
i pelSin1.JH207030           C 0 I 13
s xenTro7.KB021650            39350204  65 - 150913983 GAG-------------ATGCTACAGCCTCTT---------------------A--GAGGT----------GGACTAGA---------G------------ATA-----CTAC---CGCT------------TC-----TT-AGA---GGTGGA-----------CTAGAGAT
i xenTro7.KB021650           C 0 C 0
s fr3.chr10                    9063488  82 +   9126174 CAG-------------CCTCACCAGGATGTCAGCGATGG-------------A--GGAGC----------GCCCCTTTTGTCCCCGGT------------GCT-----GTCC---AGCA------------TC-----TG-AAC---AGGGAC-----------CCTCCCCT
i fr3.chr10                  C 0 C 0
s takFla1.KE121866              208716  73 +    220559 CAG-------------CCTCACCAGGATGTCAGCGATGG-------------A--GGAGC----------GCCCCTTT---------T------------GCT-----GTCC---AGCA------------TC-----TG-AAC---AGGGAC-----------CCTCCCCT
i takFla1.KE121866           C 0 C 0
s oreNil2.chrLG8-24            3785755 108 -  29447820 CAG-------------TCTTCACAGTCAACCAAAGCTGATCAGACAGACACTA--AAACT----------GAGGCTTTGGCCC----C------------GCCTCCAAATCC---AGCC------------TC-----TTCAAC---AAAGTCAGATGAAGTTTCCACACCC
i oreNil2.chrLG8-24          C 0 C 0
s oryLat2.ultracontig146          3962  89 -    113228 GA-----------------TTACAGTCTGACAG-------------------A--GGAGC----------AGTACTCTGAT------T------------ACA-----GTCT---GACAGAGGACCAGTACTC-----TG-ATT---ACAGTCTGATAGAGGACCAGTACTC
i oryLat2.ultracontig146     C 0 C 0
s gasAcu1.chrXI                 298408  81 -  16706052 CTGGAGT---------CCTCCTCGGGAAAACGTGAACGTC------------T--GGAGT----------CCTCCTCGGGGCAACATG------------AAC-----GTCT---GGAG------------TC-----CTCAGT---CAGGGC------------------A
i gasAcu1.chrXI              C 0 C 0
s danRer10.chr6               58382092  69 +  60272633 ---ATGGG--------CTTTCAGTAGCCAAT---------------------C--AGAAA----------GTAAGATA---------T------------GAA-----ATTG-ACAGCC------------AA-----TC-AAA---GAACAA-----------TAGGGCTC
i danRer10.chr6              C 0 C 0
s astMex1.KB882255               17975  75 -   1586233 ---GAGGGTGACACTTCCTTCTGAGCCTCAC---------------------A--TGAAC----------GTAACTTG---------T------------TCT-----CTTG---AGTC------------TC-----AT-ATG---GAGGTG-----------ACTTGTCC
i astMex1.KB882255           C 0 C 0
e tetNig2.chr10                6379385   0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382   0 -   6649201 I
e hapBur1.JH425491              252157   0 -   1273513 I
e neoBri1.JH422308             3491820   0 -   5414369 I
e araMac1.AOUJ01470298             637   0 -       895 I
e anoCar2.chr1               148577473   4 + 263920458 I
e pseHum1.KB221275             1871078 1466 +   2017280 I
e zonAlb1.KB913045            12582000 6532 +  16390125 T
e colLiv1.KB375528             5867214   0 -  25666195 I
e allMis1.JH739658               38113 134 -    691381 I
e falPer1.KB390952             2753956   0 -  18327016 I
e falChe1.KB397350             1707310   0 -   3649919 I
e macEug2.GL124958               26121   0 -     59456 I
e melGal1.chr7                34310641   0 -  38723565 I
e anaPla1.KB742696             1254472   0 -   1270250 I
e amaVit1.AOCU01222764            1324   0 -      1397 I
e apaSpi1.KB929605              579960   0 +   1015623 I
e cheMyd1.KB605988              134509   0 +    155857 I
e chrPic2.chrUn_KK083223v1      105736   1 +    779542 I
e melUnd1.JH556573              751858   2 +  10614383 I
e rheMac3.chr8                61690256 4519 + 150158102 T
e chlSab2.chr8                53284695 4759 + 139301422 T

a score=-247732.000000
s hg38.chr8_KI270814v1_alt      113304 42 +    141812 TCTCCAGCC--------TCT------TA--------GATGAGGAACTCAC-------AGTCTCTGGGCTCT
s panTro4.chr8                55015772 42 + 143986469 TCTCCAGCC--------TCT------TA--------GATGAGGAACTCAC-------AGTCTCTGGGCTCT
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59082796 42 + 153482349 TCTCCAGCC--------TCT------TA--------GATGAGGAACTCAC-------AGTCTCTGGGCTCT
i ponAbe2.chr8               C 0 C 0
s macFas5.chr8                88455035 42 - 146850525 TTTACAGTT--------TCC------TA--------GAGGAAGACCTCAA-------CCTCTACAGGCTCT
i macFas5.chr8               C 0 C 0
s ornAna1.Contig1391            114148 42 -    174025 CTTACATCC--------TGC------AC--------TCTGAGGAGCTCAT-------CATTTGCAGCCTCC
i ornAna1.Contig1391         C 0 C 0
s ficAlb2.chr4A               19370734 38 +  21182716 TCACAG--A--------TGT------GA--------ATCTCACAGATATGA------ATCTCACAGGT---
i ficAlb2.chr4A              I 24 I 21
s geoFor1.JH740417               47006 43 -     63145 tcttc---t--------ttt------cc--------atccTTAAAACAAGAAATGTCATCCTTTCCAT---
i geoFor1.JH740417           I 25 I 7
s taeGut2.chrUn_EQ837326          1144 38 -      4984 CCACCAGTC--------TCT------AA--------ATCCTT-CCACAGG-------ATCCCACCAGT---
i taeGut2.chrUn_EQ837326     I 24 I 11
s galGal4.chrUn_AADN03023623      1584 37 -      5081 TTTCCA--T--------CCC------CA--------ACCCATTAATGACG-------GAGTTTTCCAT---
i galGal4.chrUn_AADN03023623 I 38 I 7
s pelSin1.JH207030               79286 45 -     84316 GCCCCGGTC--------TCTTTCAGGAA--------GGTCTCCCAACGCG-------GCGGCGTGGGT---
i pelSin1.JH207030           I 13 C 0
s apaSpi1.KB929104               21609 39 +    818693 TCTCCAGTG--------CCT------AC--------GGACACAGAACAAA-------GCCATCCAGGT---
i apaSpi1.KB929104           n 0 I 12
s xenTro7.KB021650            39350269 42 - 150913983 GCTACAGCC--------TCT------TA--------GAGGTTGACTAGAG-------ATGCTACAGGCTCT
i xenTro7.KB021650           C 0 C 0
s fr3.chr10                    9063570 20 +   9126174 GCCTCAGCA--------TCC------CA--------ACATCT-----------------------------
i fr3.chr10                  C 0 I 7
s takFla1.KE121866              208789 20 +    220559 GCCTCAGCA--------TCC------CA--------ACATCT-----------------------------
i takFla1.KE121866           C 0 I 7
s oreNil2.chrLG8-24            3785863 27 -  29447820 GTCTCA-CT--------TCC------CACTCCACCTGCACCC-----------------------------
i oreNil2.chrLG8-24          C 0 I 6
s oryLat2.ultracontig146          4051 14 -    113228 TGTTTACAG--------TCT------GA-------------------------------------------
i oryLat2.ultracontig146     C 0 T 768
s gasAcu1.chrXI                 298489 20 -  16706052 ACATCAACG--------TCT------CG--------AGTCCT-----------------------------
i gasAcu1.chrXI              C 0 I 1
s danRer10.chr6               58382161 22 +  60272633 TCATTAACCGATCAAAATAG------TA-------------------------------------------
i danRer10.chr6              C 0 C 0
s astMex1.KB882255               18050 15 -   1586233 TCCTGAGCC--------TTG------TAT------------------------------------------
i astMex1.KB882255           C 0 C 0
e tetNig2.chr10                6379385  0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382  0 -   6649201 I
e hapBur1.JH425491              252157  0 -   1273513 I
e neoBri1.JH422308             3491820  0 -   5414369 I
e araMac1.AOUJ01470298             637  0 -       895 I
e anoCar2.chr1               148577473  4 + 263920458 I
e pseHum1.KB221275             1871078 1466 +   2017280 I
e zonAlb1.KB913045            12582000 6532 +  16390125 T
e colLiv1.KB375528             5867214  0 -  25666195 I
e allMis1.JH739658               38113 134 -    691381 I
e falPer1.KB390952             2753956  0 -  18327016 I
e falChe1.KB397350             1707310  0 -   3649919 I
e macEug2.GL124958               26121  0 -     59456 I
e melGal1.chr7                34310641  0 -  38723565 I
e anaPla1.KB742696             1254472  0 -   1270250 I
e amaVit1.AOCU01222764            1324  0 -      1397 I
e cheMyd1.KB605988              134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1      105736  1 +    779542 I
e melUnd1.JH556573              751858  2 +  10614383 I
e rheMac3.chr8                61690256 4519 + 150158102 T
e chlSab2.chr8                53284695 4759 + 139301422 T

a score=-44934.000000
s hg38.chr8_KI270814v1_alt      113346 26 +    141812 AAGAGAAGAAACTCA-----------------------TCATCTTGAGT
s panTro4.chr8                55015814 26 + 143986469 AAGAGAAGAAACTCA-----------------------TCATCTTGAGT
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59082838 12 + 153482349 --------------C-----------------------TCATCTTGAGT
i ponAbe2.chr8               C 0 C 0
s ornAna1.Contig1391            114190 26 -    174025 ACTCTGAGGAGCTCG-----------------------TCTCTTACAAT
i ornAna1.Contig1391         C 0 C 0
s xenTro7.KB021650            39350311 26 - 150913983 TAGAGGTGGACTAGA-----------------------GATGCTACAGC
i xenTro7.KB021650           C 0 C 0
s fr3.chr10                    9063597 11 +   9126174 --------------------------------------TCCCCTCCAGC
i fr3.chr10                  I 7 C 0
s takFla1.KE121866              208816 11 +    220559 --------------------------------------TCCCCTCCAGC
i takFla1.KE121866           I 7 C 0
s oreNil2.chrLG8-24            3785896 11 -  29447820 --------------------------------------ACCTCACCGAT
i oreNil2.chrLG8-24          I 6 C 0
s gasAcu1.chrXI                 298510  9 -  16706052 ----------------------------------------CTCAGGAGA
i gasAcu1.chrXI              I 1 C 0
s danRer10.chr6               58382183 48 +  60272633 -AGAGACAACCTTGACAGCCAATCAGAGCACTGATGAGCTTTCAGTAGC
i danRer10.chr6              C 0 C 0
s astMex1.KB882255               18065 26 -   1586233 -AGAGGTGA-CTTGTCATC--------------ATGAGTCTC-------
i astMex1.KB882255           C 0 C 0
e tetNig2.chr10                6379385  0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382  0 -   6649201 I
e hapBur1.JH425491              252157  0 -   1273513 I
e neoBri1.JH422308             3491820  0 -   5414369 I
e araMac1.AOUJ01470298             637  0 -       895 I
e oryLat2.ultracontig146          4065 768 -    113228 T
e ficAlb2.chr4A               19370772 21 +  21182716 I
e anoCar2.chr1               148577473  4 + 263920458 I
e pseHum1.KB221275             1871078 1466 +   2017280 I
e zonAlb1.KB913045            12582000 6532 +  16390125 T
e colLiv1.KB375528             5867214  0 -  25666195 I
e allMis1.JH739658               38113 134 -    691381 I
e falPer1.KB390952             2753956  0 -  18327016 I
e falChe1.KB397350             1707310  0 -   3649919 I
e macEug2.GL124958               26121  0 -     59456 I
e galGal4.chrUn_AADN03023623      1621  7 -      5081 I
e geoFor1.JH740417               47049  7 -     63145 I
e melGal1.chr7                34310641  0 -  38723565 I
e anaPla1.KB742696             1254472  0 -   1270250 I
e amaVit1.AOCU01222764            1324  0 -      1397 I
e apaSpi1.KB929104               21648 12 +    818693 I
e cheMyd1.KB605988              134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1      105736  1 +    779542 I
e pelSin1.JH207030               79331  0 -     84316 C
e melUnd1.JH556573              751858  2 +  10614383 I
e taeGut2.chrUn_EQ837326          1182 11 -      4984 I
e rheMac3.chr8                61690256 4519 + 150158102 T
e macFas5.chr8                88455077  0 - 146850525 C
e chlSab2.chr8                53284695 4759 + 139301422 T

a score=-211007.000000
s hg38.chr8_KI270814v1_alt      113372 36 +    141812 CTCTCAGAA--GAGTAACTGACC--------ATCTCCAACTTTCCA
s panTro4.chr8                55015840 36 + 143986469 CTCTCAGAA--GAGTAACTGACC--------ATCTCCAACTTTCCA
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59082850 36 + 153482349 ATCTCAGAA--GAGTAACTGACC--------ATCTCCAACTTTCCA
i ponAbe2.chr8               C 0 C 0
s macFas5.chr8                88455077 23 - 146850525 ----CAGAG--GAAGACTTTGCC--------ATCTCT---------
i macFas5.chr8               C 0 C 0
s ornAna1.Contig1391            114216 36 -    174025 CTCTGCTCT--GAGGAACTCATT--------GTTCATAGCCTCTGC
i ornAna1.Contig1391         C 0 C 0
s colLiv1.KB375822             2439212 34 +   2691611 CTCACCCAA--GCACAACTGACC--------CTGCCCACCCTC--A
i colLiv1.KB375822           n 0 C 0
s ficAlb2.chr4A               19370793 36 +  21182716 CTCACAGAT--ATGAATCTCACA--------GGTCTGAATCTCACA
i ficAlb2.chr4A              I 21 C 0
s geoFor1.JH740417               47056 30 -     63145 -CCAAG-------GAATTTCATC--------TTTTCCATCCTTAAA
i geoFor1.JH740417           I 7 C 0
s taeGut2.chrUn_EQ837326          1193 21 -      4984 TCCACA-------GGATCCCACC--------AGTC----------A
i taeGut2.chrUn_EQ837326     I 11 C 0
s galGal4.chrUn_AADN03023623      1628 36 -      5081 -CCATTAATG-GAGGAGTTTTCC--------ATCCCCAATCCATTA
i galGal4.chrUn_AADN03023623 I 7 C 0
s pelSin1.JH207030               79331 10 -     84316 ------------------------------------CGCACTGAAG
i pelSin1.JH207030           C 0 C 0
s apaSpi1.KB929104               21660 10 +    818693 ------------------------------------CACCCTCCAG
i apaSpi1.KB929104           I 12 C 0
s xenTro7.KB021650            39350337 36 - 150913983 CTCTTAGAG--GTGGACTAGAGA--------TGCTACAGCCTCTTA
i xenTro7.KB021650           C 0 C 0
s fr3.chr10                    9063608 36 +   9126174 ATCTGAACA--GGGACCCTTCCC--------TGCCTCAGCATCCCA
i fr3.chr10                  C 0 C 0
s takFla1.KE121866              208827 36 +    220559 ATCTGAACA--GGGACCCTTCCC--------TGCCTCAGCATCCCA
i takFla1.KE121866           C 0 C 0
s oreNil2.chrLG8-24            3785907 38 -  29447820 CTCTGAGCC--TG--CCTCTCCCCAAGTGGTTGCTTCAGCTC----
i oreNil2.chrLG8-24          C 0 C 0
s oryLat2.ultracontig146          3297 36 -    113228 aaaagaaga--agagacgTTCAG--------AAGACCAGTACTCTG
i oryLat2.ultracontig146     T 768 I 3
s gasAcu1.chrXI                 298519 44 -  16706052 ACATGAACGTCTGGAGTCTTCCTCAGGGG--AACATGAACGTCTGG
i gasAcu1.chrXI              C 0 C 0
s danRer10.chr6               58382231 29 +  60272633 CAATCAGAA--AGTAATATA---------------TAAGATTGACA
i danRer10.chr6              C 0 I 5
s astMex1.KB882255               18091 33 -   1586233 --ATAAGAA--GGTAACTTGCCC--------T-CCTTAGCTTCACA
i astMex1.KB882255           C 0 T 420
e tetNig2.chr10                6379385  0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382  0 -   6649201 I
e hapBur1.JH425491              252157  0 -   1273513 I
e neoBri1.JH422308             3491820  0 -   5414369 I
e araMac1.AOUJ01470298             637  0 -       895 I
e anoCar2.chr1               148577473  4 + 263920458 I
e pseHum1.KB221275             1871078 1466 +   2017280 I
e zonAlb1.KB913045            12582000 6532 +  16390125 T
e allMis1.JH739658               38113 134 -    691381 I
e falPer1.KB390952             2753956  0 -  18327016 I
e falChe1.KB397350             1707310  0 -   3649919 I
e macEug2.GL124958               26121  0 -     59456 I
e melGal1.chr7                34310641  0 -  38723565 I
e anaPla1.KB742696             1254472  0 -   1270250 I
e amaVit1.AOCU01222764            1324  0 -      1397 I
e cheMyd1.KB605988              134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1      105736  1 +    779542 I
e melUnd1.JH556573              751858  2 +  10614383 I
e rheMac3.chr8                61690256 4519 + 150158102 T
e chlSab2.chr8                53284695 4759 + 139301422 T

a score=-633410.000000
s hg38.chr8_KI270814v1_alt      113408 44 +    141812 GCAA----------------AGAAA--------CTGGCCATCTCCTACCTCTCAGA-AAAGAA------CC---TC------AC---------------------------------------------
s panTro4.chr8                55015876 44 + 143986469 GCAA----------------AGAAA--------CTGGCCATCTTCTACCTCTCAGA-AAAGAA------CC---TC------AC---------------------------------------------
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59082886 44 + 153482349 GCAA----------------AGAAA--------CTGGCCATCTCCTACCTCTCAGA-AAGGAA------TC---TC------AC---------------------------------------------
i ponAbe2.chr8               C 0 C 0
s macFas5.chr8                88455100 40 - 146850525 --------------------AGGAC--------TTTGCCATCTCTAACCCCTCAGA-AGAGGA------CT---CC------GC---------------------------------------------
i macFas5.chr8               C 0 C 0
s ornAna1.Contig1391            114252 44 -    174025 TCTG----------------AGGAG--------CTTGTCTCTTACATCCTCCACTC-TGAGGT------GC---TC------AT---------------------------------------------
i ornAna1.Contig1391         C 0 C 0
s colLiv1.KB375822             2439246 46 +   2691611 CCCAAGCACAAC--------TGACC--------CTGCCCACCCTCACCCA-------AGCACA------AC---TG------AC---------------------------------------------
i colLiv1.KB375822           C 0 I 6
s ficAlb2.chr4A               19370829 44 +  21182716 GATGTGAATCTCACAGATATGAATC--------TCACAGGTCT-----------------GAA------TC---TC------AC---------------------------------------------
i ficAlb2.chr4A              C 0 I 21
s geoFor1.JH740417               47086 44 -     63145 CCAAAGGATTTC----------ATC--------CTTTATGTCCTTAAACT-------AAGGAA------TT---TC------AT---------------------------------------------
i geoFor1.JH740417           C 0 I 21
s taeGut2.chrUn_EQ837326          1214 54 -      4984 CCAAATCCCTTCTCA-----GGATC--------CCACTGGTCCCCAAACCCTCCA--AGAGGG------CC---CC------AT---------------------------------------------
i taeGut2.chrUn_EQ837326     C 0 I 21
s galGal4.chrUn_AADN03023623      1664 46 -      5081 CCAATG--------------GGAAG--------TTTTCCATCCCCAACCCATTAATGATGGGG------TT---TT------C----------------------------------------------
i galGal4.chrUn_AADN03023623 C 0 C 0
s pelSin1.JH207030               79341 53 -     84316 CGTCTGCTGCACTTCGCGGTGGAGGCTGG----CTACCTGTCCTCCAACT-------A-----------CC---TC------AT---------------------------------------------
i pelSin1.JH207030           C 0 C 0
s apaSpi1.KB929104               21670 68 +    818693 CAGGTTCTCCA------GAAGGAGCACAATCCCTTCCCAGTCTTCCAAGA-------AAGGAACATAGGCT---TCCAAGAGAA---------------------------------------------
i apaSpi1.KB929104           C 0 C 0
s xenTro7.KB021650            39350373 44 - 150913983 GAGG----------------TGGAC--------TAGAGATGCTACAGCCTCTTAGA-GGTGGA------CT---AG------AG---------------------------------------------
i xenTro7.KB021650           C 0 C 0
s fr3.chr10                    9063644 44 +   9126174 -------------------------------------ACATCTCCACTGTTCCCCT-CCAGCA------TC---TG-------------------------AACAGGGACC--------C--TC---CC
i fr3.chr10                  C 0 C 0
s takFla1.KE121866              208863 44 +    220559 -------------------------------------ACATCTCCACTGTTCCCCT-CCAGCA------TC---TG-------------------------AACAGGGACC--------C--TC---CC
i takFla1.KE121866           C 0 C 0
s oreNil2.chrLG8-24            3785945 55 -  29447820 --------------------------------------CAGCTCCA-TGTCCAGCC-CCAGCA------CC---AG------TCCTCTCTTC------TTCCACGTATACC--------T--CC---AC
i oreNil2.chrLG8-24          C 0 C 0
s oryLat2.ultracontig146          3336 54 -    113228 -------------------------------------ACAGTCTGACAG----------AGGA------GC---AG------TACTCTGATT--ACAGTCTGACAGAGGAC--------CAGTA---CT
i oryLat2.ultracontig146     I 3 C 0
s gasAcu1.chrXI                 298563 63 -  16706052 -------------------------------------AGTCTTCCTCGGGGGAACA-TGAACG------TC---TG------GAGTCTTCCT--CAGGGG-AACATGAACG--------T--CTGGAGT
i gasAcu1.chrXI              C 0 C 0
s danRer10.chr6               58382265 48 +  60272633 --------------------------------------------------TCAAAG---AAAA------GT---TG------AGCTGTCATTTACCAATCAGAAAGTAATA--------T--TC---AA
i danRer10.chr6              I 5 C 0
s astMex1.KB882152              821259 61 +   2582946 --------------------------------------------------ACAAAG-CCAACA------GTACCAG------GACTAGCAGTGACAAGACTCGCAGTAACAAGACTCACT--GT---AA
i astMex1.KB882152           I 805 C 0
e tetNig2.chr10                6379385  0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382  0 -   6649201 I
e hapBur1.JH425491              252157  0 -   1273513 I
e neoBri1.JH422308             3491820  0 -   5414369 I
e araMac1.AOUJ01470298             637  0 -       895 I
e anoCar2.chr1               148577473  4 + 263920458 I
e pseHum1.KB221275             1871078 1466 +   2017280 I
e zonAlb1.KB913045            12582000 6532 +  16390125 T
e allMis1.JH739658               38113 134 -    691381 I
e falPer1.KB390952             2753956  0 -  18327016 I
e falChe1.KB397350             1707310  0 -   3649919 I
e macEug2.GL124958               26121  0 -     59456 I
e melGal1.chr7                34310641  0 -  38723565 I
e anaPla1.KB742696             1254472  0 -   1270250 I
e amaVit1.AOCU01222764            1324  0 -      1397 I
e cheMyd1.KB605988              134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1      105736  1 +    779542 I
e melUnd1.JH556573              751858  2 +  10614383 I
e rheMac3.chr8                61690256 4519 + 150158102 T
e chlSab2.chr8                53284695 4759 + 139301422 T

a score=-93106.000000
s hg38.chr8_KI270814v1_alt      113452  7 +    141812 CATCTCC---------------
s panTro4.chr8                55015920  7 + 143986469 CATCTCC---------------
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59082930  7 + 153482349 CATCTCC---------------
i ponAbe2.chr8               C 0 C 0
s macFas5.chr8                88455140  7 - 146850525 CATCTTT---------------
i macFas5.chr8               C 0 C 0
s ornAna1.Contig1391            114296  7 -    174025 CATTCGT---------------
i ornAna1.Contig1391         C 0 C 0
s colLiv1.KB375822             2439298  7 +   2691611 CACCCTC---------------
i colLiv1.KB375822           I 6 C 0
s ficAlb2.chr4A               19370894  7 +  21182716 GAATCTC---------------
i ficAlb2.chr4A              I 21 C 0
s geoFor1.JH740417               47151  7 -     63145 GAATTTC---------------
i geoFor1.JH740417           I 21 C 0
s taeGut2.chrUn_EQ837326          1289  7 -      4984 GGGTCCC---------------
i taeGut2.chrUn_EQ837326     I 21 C 0
s pseHum1.KB221275             1872544  7 +   2017280 CATCTCC---------------
i pseHum1.KB221275           I 1466 C 0
s galGal4.chrUn_AADN03023623      1710  7 -      5081 CATCCCC---------------
i galGal4.chrUn_AADN03023623 C 0 C 0
s pelSin1.JH207030               79394  7 -     84316 CATGGCC---------------
i pelSin1.JH207030           C 0 n 0
s apaSpi1.KB929104               21738  7 +    818693 CAAGGCC---------------
i apaSpi1.KB929104           C 0 I 5
s xenTro7.KB021650            39350417  6 - 150913983 -ATGCTA---------------
i xenTro7.KB021650           C 0 I 1
s fr3.chr10                    9063688  7 +   9126174 ------CTGCCT---------C
i fr3.chr10                  C 0 C 0
s takFla1.KE121866              208907  7 +    220559 ------CTGCCT---------C
i takFla1.KE121866           C 0 C 0
s oreNil2.chrLG8-24            3786000  7 -  29447820 ------CCCCGT---------C
i oreNil2.chrLG8-24          C 0 C 0
s oryLat2.ultracontig146          3390 16 -    113228 ------CTGATTACAGTCTGAC
i oryLat2.ultracontig146     C 0 C 0
s gasAcu1.chrXI                 298626  7 -  16706052 ------CCTCCT---------C
i gasAcu1.chrXI              C 0 C 0
s danRer10.chr6               58382313  3 +  60272633 ------CC-------------T
i danRer10.chr6              C 0 C 0
s astMex1.KB882152              821320  1 +   2582946 ------C---------------
i astMex1.KB882152           C 0 C 0
e tetNig2.chr10                6379385  0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382  0 -   6649201 I
e hapBur1.JH425491              252157  0 -   1273513 I
e neoBri1.JH422308             3491820  0 -   5414369 I
e araMac1.AOUJ01470298             637  0 -       895 I
e anoCar2.chr1               148577473  4 + 263920458 I
e zonAlb1.KB913045            12582000 6532 +  16390125 T
e allMis1.JH739658               38113 134 -    691381 I
e falPer1.KB390952             2753956  0 -  18327016 I
e falChe1.KB397350             1707310  0 -   3649919 I
e macEug2.GL124958               26121  0 -     59456 I
e melGal1.chr7                34310641  0 -  38723565 I
e anaPla1.KB742696             1254472  0 -   1270250 I
e amaVit1.AOCU01222764            1324  0 -      1397 I
e cheMyd1.KB605988              134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1      105736  1 +    779542 I
e melUnd1.JH556573              751858  2 +  10614383 I
e rheMac3.chr8                61690256 4519 + 150158102 T
e chlSab2.chr8                53284695 4759 + 139301422 T

a score=-154931.000000
s hg38.chr8_KI270814v1_alt      113459 22 +    141812 AGCCTCTCAGAAATGGAATTGG------------
s panTro4.chr8                55015927 22 + 143986469 AGCCTCTCGGAAATGGAATTGG------------
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59082937 22 + 153482349 AGCCTCTTGGAAATGGAGTTGG------------
i ponAbe2.chr8               C 0 C 0
s macFas5.chr8                88455147 22 - 146850525 AGCCTCTCAACAAAAGACCTGG------------
i macFas5.chr8               C 0 C 0
s ornAna1.Contig1391            114303 22 -    174025 AGCCTCCGCTCTGAGGAGCTCG------------
i ornAna1.Contig1391         C 0 C 0
s colLiv1.KB375822             2439305 22 +   2691611 ACCCAAGCACAACTGACCCTGC------------
i colLiv1.KB375822           C 0 C 0
s ficAlb2.chr4A               19370901  3 +  21182716 A-CA------------------------------
i ficAlb2.chr4A              C 0 C 0
s geoFor1.JH740417               47158  7 -     63145 ATCC-------TTT--------------------
i geoFor1.JH740417           C 0 C 0
s taeGut2.chrUn_EQ837326          1296  4 -      4984 ATCA------------------------------
i taeGut2.chrUn_EQ837326     C 0 C 0
s pseHum1.KB221275             1872551 11 +   2017280 ATCC-------CTTGG----GA------------
i pseHum1.KB221275           C 0 C 0
s galGal4.chrUn_AADN03023623      1717 22 -      5081 AACCCATTAATGATGGAGTTTT------------
i galGal4.chrUn_AADN03023623 C 0 C 0
s apaSpi1.KB929104               21750  6 +    818693 ----------------GGTTGT------------
i apaSpi1.KB929104           I 5 C 0
s xenTro7.KB021650            39350424 22 - 150913983 AGCCTCTTAGAGGTGGACTAGA------------
i xenTro7.KB021650           I 1 C 0
s fr3.chr10                    9063695 22 +   9126174 ------------AGCATCCCAACATCTCCACTGT
i fr3.chr10                  C 0 I 182
s takFla1.KE121866              208914 22 +    220559 ------------AGCATCCCAACATCTCCACTGT
i takFla1.KE121866           C 0 C 0
s oreNil2.chrLG8-24            3786007 15 -  29447820 ------------AGCAACACAGCTTCG-------
i oreNil2.chrLG8-24          C 0 C 0
s oryLat2.ultracontig146          3406 14 -    113228 ------------AGAGGACCAGTACT--------
i oryLat2.ultracontig146     C 0 C 0
s gasAcu1.chrXI                 298633 12 -  16706052 ------------AGGAGAACATGA----------
i gasAcu1.chrXI              C 0 C 0
s danRer10.chr6               58382316 10 +  60272633 ------------TGAAAGCCAA------------
i danRer10.chr6              C 0 I 5
s astMex1.KB882152              821321  8 +   2582946 --------------AAAGCCAA------------
i astMex1.KB882152           C 0 I 5
e tetNig2.chr10                6379385  0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382  0 -   6649201 I
e hapBur1.JH425491              252157  0 -   1273513 I
e neoBri1.JH422308             3491820  0 -   5414369 I
e araMac1.AOUJ01470298             637  0 -       895 I
e anoCar2.chr1               148577473  4 + 263920458 I
e zonAlb1.KB913045            12582000 6532 +  16390125 T
e allMis1.JH739658               38113 134 -    691381 I
e falPer1.KB390952             2753956  0 -  18327016 I
e falChe1.KB397350             1707310  0 -   3649919 I
e macEug2.GL124958               26121  0 -     59456 I
e melGal1.chr7                34310641  0 -  38723565 I
e anaPla1.KB742696             1254472  0 -   1270250 I
e amaVit1.AOCU01222764            1324  0 -      1397 I
e cheMyd1.KB605988              134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1      105736  1 +    779542 I
e pelSin1.JH207030               79401  0 -     84316 I
e melUnd1.JH556573              751858  2 +  10614383 I
e rheMac3.chr8                61690256 4519 + 150158102 T
e chlSab2.chr8                53284695 4759 + 139301422 T

a score=-3698.000000
s hg38.chr8_KI270814v1_alt      113481 3 +    141812 CCA
s panTro4.chr8                55015949 3 + 143986469 CCA
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59082959 3 + 153482349 CCA
i ponAbe2.chr8               C 0 C 0
s macFas5.chr8                88455169 3 - 146850525 ACA
i macFas5.chr8               C 0 C 0
s ornAna1.Contig1391            114325 3 -    174025 TCT
i ornAna1.Contig1391         C 0 C 0
s colLiv1.KB375822             2439327 3 +   2691611 CCA
i colLiv1.KB375822           C 0 C 0
s ficAlb2.chr4A               19370904 1 +  21182716 --G
i ficAlb2.chr4A              C 0 C 0
s geoFor1.JH740417               47165 3 -     63145 TTG
i geoFor1.JH740417           C 0 C 0
s taeGut2.chrUn_EQ837326          1300 1 -      4984 --G
i taeGut2.chrUn_EQ837326     C 0 C 0
s pseHum1.KB221275             1872562 3 +   2017280 TGG
i pseHum1.KB221275           C 0 C 0
s galGal4.chrUn_AADN03023623      1739 3 -      5081 CCA
i galGal4.chrUn_AADN03023623 C 0 C 0
s apaSpi1.KB929104               21756 3 +    818693 TCA
i apaSpi1.KB929104           C 0 I 17
s xenTro7.KB021650            39350446 3 - 150913983 GAT
i xenTro7.KB021650           C 0 C 0
s fr3.chr10                    9063899 3 +   9126174 CCC
i fr3.chr10                  I 182 C 0
s oryLat2.ultracontig146          3420 3 -    113228 CTG
i oryLat2.ultracontig146     C 0 C 0
s gasAcu1.chrXI                 298645 3 -  16706052 ACG
i gasAcu1.chrXI              C 0 C 0
s danRer10.chr6               58382331 3 +  60272633 TCA
i danRer10.chr6              I 5 C 0
s astMex1.KB882152              821334 3 +   2582946 CCA
i astMex1.KB882152           I 5 I 10
e oreNil2.chrLG8-24            3786022 0 -  29447820 C
e tetNig2.chr10                6379385 0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382 0 -   6649201 I
e hapBur1.JH425491              252157 0 -   1273513 I
e neoBri1.JH422308             3491820 0 -   5414369 I
e araMac1.AOUJ01470298             637 0 -       895 I
e takFla1.KE121866              208936 0 +    220559 C
e anoCar2.chr1               148577473 4 + 263920458 I
e zonAlb1.KB913045            12582000 6532 +  16390125 T
e allMis1.JH739658               38113 134 -    691381 I
e falPer1.KB390952             2753956 0 -  18327016 I
e falChe1.KB397350             1707310 0 -   3649919 I
e macEug2.GL124958               26121 0 -     59456 I
e melGal1.chr7                34310641 0 -  38723565 I
e anaPla1.KB742696             1254472 0 -   1270250 I
e amaVit1.AOCU01222764            1324 0 -      1397 I
e cheMyd1.KB605988              134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1      105736 1 +    779542 I
e pelSin1.JH207030               79401 0 -     84316 I
e melUnd1.JH556573              751858 2 +  10614383 I
e rheMac3.chr8                61690256 4519 + 150158102 T
e chlSab2.chr8                53284695 4759 + 139301422 T

a score=-92885.000000
s hg38.chr8_KI270814v1_alt      113484 24 +    141812 TCTCCTGCCTC----------TCAGAGGAGGACC
s panTro4.chr8                55015952 24 + 143986469 TCTCCCGCCTC----------TCAGAGGAGGACC
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59082962 24 + 153482349 TCTCCAGCCTC----------TCAGAGGAGGACC
i ponAbe2.chr8               C 0 C 0
s macFas5.chr8                88455172 24 - 146850525 TGTGCAGGATC----------TCAGAAGAGAACC
i macFas5.chr8               C 0 I 7692
s ornAna1.Contig1391            114328 24 -    174025 CTTACAACCTC----------TGCTCTGAGGAAC
i ornAna1.Contig1391         C 0 C 0
s colLiv1.KB375822             2439330 24 +   2691611 CCCTCACCCAA----------GCACAACTGACCC
i colLiv1.KB375822           C 0 C 0
s ficAlb2.chr4A               19370905 24 +  21182716 GTCTGAATCTC----------ACAGATGTGAATC
i ficAlb2.chr4A              C 0 C 0
s geoFor1.JH740417               47168 24 -     63145 CCCTAAAACCA----------ACGAATTTCATCC
i geoFor1.JH740417           C 0 C 0
s taeGut2.chrUn_EQ837326          1301 24 -      4984 TCCTTAAACCC----------TCCAAGAGAGTCC
i taeGut2.chrUn_EQ837326     C 0 C 0
s pseHum1.KB221275             1872565 11 +   2017280 GTTT-----------------------GTGGTCA
i pseHum1.KB221275           C 0 C 0
s galGal4.chrUn_AADN03023623      1742 26 -      5081 TCCCCAACCCA--------TTACCAATGAGGAGT
i galGal4.chrUn_AADN03023623 C 0 C 0
s pelSin1.JH211051               22470 24 +    476004 CCCCCGGCCCA----------GCGGCGGAGGGAG
i pelSin1.JH211051           n 0 I 7
s apaSpi1.KB929104               21776 22 +    818693 --TACAGATAC----------TCCACAAGGAGAA
i apaSpi1.KB929104           I 17 I 8
s xenTro7.KB021650            39350449 24 - 150913983 ACTGCCGCTTC----------TTAGAGGTGGACT
i xenTro7.KB021650           C 0 I 1
s fr3.chr10                    9063902 25 +   9126174 TCCAGCATCTG---------AACAGGGACCCTTC
i fr3.chr10                  C 0 C 0
s oreNil2.chrLG8-24            3786022 23 -  29447820 -TCACCACCTG----------TCAGCGATgtctc
i oreNil2.chrLG8-24          C 0 C 0
s oryLat2.ultracontig146          3423 24 -    113228 TTTACAGTCTG----------ACAGAGGAGCAGT
i oryLat2.ultracontig146     C 0 C 0
s gasAcu1.chrXI                 298648 34 -  16706052 TCTGGAGTCTTCCTCAGGGGAACATGAACGTCTG
i gasAcu1.chrXI              C 0 C 0
s danRer10.chr6               58382334 24 +  60272633 CAGATGGGCTT----------TCAGTATCCATTC
i danRer10.chr6              C 0 C 0
s astMex1.KB882152              821347 24 +   2582946 TAACAAGACTC----------ACAGTAACAAGAC
i astMex1.KB882152           I 10 C 0
e tetNig2.chr10                6379385  0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382  0 -   6649201 I
e hapBur1.JH425491              252157  0 -   1273513 I
e neoBri1.JH422308             3491820  0 -   5414369 I
e araMac1.AOUJ01470298             637  0 -       895 I
e takFla1.KE121866              208936  0 +    220559 C
e anoCar2.chr1               148577473  4 + 263920458 I
e zonAlb1.KB913045            12582000 6532 +  16390125 T
e allMis1.JH739658               38113 134 -    691381 I
e falPer1.KB390952             2753956  0 -  18327016 I
e falChe1.KB397350             1707310  0 -   3649919 I
e macEug2.GL124958               26121  0 -     59456 I
e melGal1.chr7                34310641  0 -  38723565 I
e anaPla1.KB742696             1254472  0 -   1270250 I
e amaVit1.AOCU01222764            1324  0 -      1397 I
e cheMyd1.KB605988              134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1      105736  1 +    779542 I
e melUnd1.JH556573              751858  2 +  10614383 I
e rheMac3.chr8                61690256 4519 + 150158102 T
e chlSab2.chr8                53284695 4759 + 139301422 T

a score=-113911.000000
s hg38.chr8_KI270814v1_alt      113508 23 +    141812 TCAATGTCTCC--------AGACTCTCAG----AG
s panTro4.chr8                55015976 23 + 143986469 TCAATGTCTCC--------AGACTCTCAG----AG
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59082986 23 + 153482349 TCAATGTCTCC--------AGACTCTCAG----AG
i ponAbe2.chr8               C 0 C 0
s ornAna1.Contig1391            114352 23 -    174025 TCATTGTTCAT--------AGCCTCTGCT----CT
i ornAna1.Contig1391         C 0 C 0
s colLiv1.KB375822             2439354 16 +   2691611 -------TGCC--------CACCCTCACC----CA
i colLiv1.KB375822           C 0 C 0
s ficAlb2.chr4A               19370929 16 +  21182716 -------TCAC--------AGATATGAAT----CT
i ficAlb2.chr4A              C 0 C 0
s geoFor1.JH740417               47192 16 -     63145 -------TTTA--------TATCCTTAAA----CC
i geoFor1.JH740417           C 0 C 0
s taeGut2.chrUn_EQ837326          1325 20 -      4984 -------CATC--------AGTCCCTAAACCCTCC
i taeGut2.chrUn_EQ837326     C 0 C 0
s pseHum1.KB221275             1872576 14 +   2017280 -------TCTC--------CATCCCTTGG------
i pseHum1.KB221275           C 0 C 0
s galGal4.chrUn_AADN03023623      1768 16 -      5081 -------TTTC--------CATCCCCAAC----CC
i galGal4.chrUn_AADN03023623 C 0 C 0
s pelSin1.JH211051               22501 16 +    476004 -------CCCC--------GGCCCAGGAG----CG
i pelSin1.JH211051           I 7 C 0
s apaSpi1.KB929104               21806 16 +    818693 -------TCCC--------AGTCTTTCAG----AA
i apaSpi1.KB929104           I 8 C 0
s xenTro7.KB021650            39350474 22 - 150913983 GAGATG-CTAC--------TGCTTCTTAG----AG
i xenTro7.KB021650           I 1 T 480
s fr3.chr10                    9063927 22 +   9126174 CCTGCCTCAGC--------ATCCCAACAT----C-
i fr3.chr10                  C 0 C 0
s oreNil2.chrLG8-24            3786045 31 -  29447820 acctcctcctccaggtGTTAAACCAACAC----CT
i oreNil2.chrLG8-24          C 0 C 0
s oryLat2.ultracontig146          3447 23 -    113228 ACTCTGATTAC--------AGTCTGACAG----AG
i oryLat2.ultracontig146     C 0 C 0
s gasAcu1.chrXI                 298682 23 -  16706052 GAGTCTTCCTC--------AGGGGAACAT----GA
i gasAcu1.chrXI              C 0 C 0
s danRer10.chr6               58382358 20 +  60272633 AGAAAATATGA--------TA--CAACAT----T-
i danRer10.chr6              C 0 C 0
s astMex1.KB882152              821371 23 +   2582946 ACAAAGTAACA--------AAACCAACAA----TA
i astMex1.KB882152           C 0 C 0
e tetNig2.chr10                6379385  0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382  0 -   6649201 I
e hapBur1.JH425491              252157  0 -   1273513 I
e neoBri1.JH422308             3491820  0 -   5414369 I
e araMac1.AOUJ01470298             637  0 -       895 I
e takFla1.KE121866              208936  0 +    220559 C
e anoCar2.chr1               148577473  4 + 263920458 I
e zonAlb1.KB913045            12582000 6532 +  16390125 T
e allMis1.JH739658               38113 134 -    691381 I
e falPer1.KB390952             2753956  0 -  18327016 I
e falChe1.KB397350             1707310  0 -   3649919 I
e macEug2.GL124958               26121  0 -     59456 I
e melGal1.chr7                34310641  0 -  38723565 I
e anaPla1.KB742696             1254472  0 -   1270250 I
e amaVit1.AOCU01222764            1324  0 -      1397 I
e cheMyd1.KB605988              134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1      105736  1 +    779542 I
e melUnd1.JH556573              751858  2 +  10614383 I
e rheMac3.chr8                61690256 4519 + 150158102 T
e macFas5.chr8                88455196 7692 - 146850525 I
e chlSab2.chr8                53284695 4759 + 139301422 T

a score=-408586.000000
s hg38.chr8_KI270814v1_alt      113531 56 +    141812 GAGGAATT---------CACAG-TC-------------TCCAGGCTCTCTGAGATGAAAC--TCACTATCCTGAGC----TTCTG
s panTro4.chr8                55015999 56 + 143986469 GAGGAATT---------CACAG-TC-------------TCCAGGCTCTCTGAGATGAAAC--TCACTAAGCTGAGC----TTCTG
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59083009 54 + 153482349 GAGGAATT-----------CAG-TC-------------TCCAAGCTCTCTGAGATGAAAC--TCACTATCCTGAGC----CTCTG
i ponAbe2.chr8               C 0 C 0
s ornAna1.Contig1391            114375 56 -    174025 GAGGAGCT--TGTCTCTTACAT-CC-------------TCCA----CTCTGAGGTG---C--TCATCATTCGCAGC----CTCCG
i ornAna1.Contig1391         C 0 I 5
s colLiv1.KB375822             2439370 58 +   2691611 AGCACAAC--TGACCCTGCCCA-CC-------------CTCACCCAAGCACAACTGACCC--TGCCCACCCTCACC---------
i colLiv1.KB375822           C 0 C 0
s ficAlb2.chr4A               19370945 58 +  21182716 CACAGGTC--TGAATCTCACAG-AT-------------GTGAATCTCACAGATATGAATC--TCACAGGTCTGAAT---------
i ficAlb2.chr4A              C 0 C 0
s geoFor1.JH740417               47208 58 -     63145 AAGAAATT--TCATCCTTTCCA-TC-------------CTTAAGCCAAGGAAACTTATCC--TTTATATCCTTAAA---------
i geoFor1.JH740417           C 0 C 0
s taeGut2.chrUn_EQ837326          1345 58 -      4984 AAGAGG------GTCCCATCAG-TC-------------CCCAAACCCTCTAAGACGGCCC--CATCAGTCCCTAAACCCT-----
i taeGut2.chrUn_EQ837326     C 0 C 0
s pseHum1.KB221275             1872590 60 +   2017280 GAGGGGTTTGTGGTCATCTCCA-TC-------------CCTTGGGATGGGTTTGTGGTCA--TCTCCATCCCTTGG---------
i pseHum1.KB221275           C 0 C 0
s galGal4.chrUn_AADN03023623      1784 58 -      5081 ATTAATGG--AGGAGTTTTCCA-TC-------------CCCAACCCATTAATGGAGGAGT--TTTCCATCCCCAAT---------
i galGal4.chrUn_AADN03023623 C 0 C 0
s pelSin1.JH211051               22517 58 +    476004 GAGGGAGT--CAGAGCCCCCGG-CC-------------CAGCGGCGGAGGGAGTCAGAGC--CCCCGGCCCAGGAG---------
i pelSin1.JH211051           C 0 C 0
s apaSpi1.KB929104               21822 55 +    818693 GGAGAACA--AAGCTCTTCCAA-TC-------------ATTCA--GAAGGAGACCAAAGCTGTCCCAGTCT---TT---------
i apaSpi1.KB929104           C 0 C 0
s xenTro7.KB021650            39350016 56 - 150913983 GTGGACTA--GAGATGCTACAG-CC-------------TCTTAGAGGTGGATTAGAGATG--CTACAGCCTCTT-----------
i xenTro7.KB021650           T 480 C 0
s fr3.chr10                    9063949 47 +   9126174 ---------------TCCGCTG-TTCCC----------CTCCAGCATCTGAACAGGGACC--CTTCCCTGCCTCA----------
i fr3.chr10                  C 0 C 0
s oreNil2.chrLG8-24            3786076 52 -  29447820 ---------GTGGTTTCCACAG-TTTCAGAGGCTGCTGTTCAACCAGCTGTGGAGGCaac-------------ca----------
i oreNil2.chrLG8-24          C 0 C 0
s oryLat2.ultracontig146          3470 54 -    113228 ---------GAGCAGTACTCTGATTACA----------GTCTGACAGAGGAGCAGTACTC--TGATTACAGTCTG----------
i oryLat2.ultracontig146     C 0 C 0
s gasAcu1.chrXI                 298705 46 -  16706052 ---------TCG---TCTGGAG-TCCTC----------CT----CAGGAGAACATGAACG--TCTGGAGTCCTCC----------
i gasAcu1.chrXI              C 0 C 0
s danRer10.chr6               58382378 43 +  60272633 -------------GACACCCAA-TCAGAGAACAGTTGGGCCATCAAAAAGAAAAATA----------------------------
i danRer10.chr6              C 0 C 0
s astMex1.KB882152              821394 48 +   2582946 ---------CCAGGACTAGCAG-TAACAAGACTCCTAG--CAACAAGACACAAAGTAACA-------------------------
i astMex1.KB882152           C 0 C 0
e tetNig2.chr10                6379385  0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382  0 -   6649201 I
e hapBur1.JH425491              252157  0 -   1273513 I
e neoBri1.JH422308             3491820  0 -   5414369 I
e araMac1.AOUJ01470298             637  0 -       895 I
e takFla1.KE121866              208936  0 +    220559 C
e anoCar2.chr1               148577473  4 + 263920458 I
e zonAlb1.KB913045            12582000 6532 +  16390125 T
e allMis1.JH739658               38113 134 -    691381 I
e falPer1.KB390952             2753956  0 -  18327016 I
e falChe1.KB397350             1707310  0 -   3649919 I
e macEug2.GL124958               26121  0 -     59456 I
e melGal1.chr7                34310641  0 -  38723565 I
e anaPla1.KB742696             1254472  0 -   1270250 I
e amaVit1.AOCU01222764            1324  0 -      1397 I
e cheMyd1.KB605988              134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1      105736  1 +    779542 I
e melUnd1.JH556573              751858  2 +  10614383 I
e rheMac3.chr8                61690256 4519 + 150158102 T
e macFas5.chr8                88455196 7692 - 146850525 I
e chlSab2.chr8                53284695 4759 + 139301422 T

a score=-231709.000000
s hg38.chr8_KI270814v1_alt      113587 28 +    141812 AGAA---------------------------------GAGAAGC----TTACC------A------------TCTCCAACCTC
s panTro4.chr8                55016055 28 + 143986469 AGAA---------------------------------GAGAAGC----TTACC------A------------TCTCCAACCTC
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59083063 28 + 153482349 AGAA---------------------------------GAGAAGC----TCACC------A------------TCTCCAACCTC
i ponAbe2.chr8               C 0 C 0
s macFas5.chr8                88462888 28 - 146850525 AGAG---------------------------------AAGGACC----TCACC------A------------TCTCCAGCCTC
i macFas5.chr8               I 7692 C 0
s ornAna1.Contig1391            114436 53 -    174025 AGGAGCTCGTCTCGTACAACCTCCGCTCT--------GAGGAGC----TCGTC------T------------CTTACAACCTC
i ornAna1.Contig1391         I 5 C 0
s colLiv1.KB375822             2439428 27 +   2691611 --------------------------CAA--------GCACAAC----TGACC------C------------TGCCCACCCTC
i colLiv1.KB375822           C 0 C 0
s ficAlb2.chr4A               19371003 27 +  21182716 --------------------------CTC--------ACAGATG----TGAAT------C------------TCACAGATATG
i ficAlb2.chr4A              C 0 C 0
s geoFor1.JH740417               47266 27 -     63145 --------------------------CCA--------AGGAATT----TCATC------C------------TTTTCATCCTT
i geoFor1.JH740417           C 0 C 0
s taeGut2.chrUn_EQ837326          1403 30 -      4984 --------------------------CCA--------AGAGGGTCCTACCAGC------C------------TCCAAACCCT-
i taeGut2.chrUn_EQ837326     C 0 C 0
s pseHum1.KB221275             1872650 26 +   2017280 ----------------------------G--------ATGGGTT--TGTGGTC------A------------TCTGCATCCC-
i pseHum1.KB221275           C 0 C 0
s galGal4.chrUn_AADN03023623      1842 35 -      5081 --------------------------CCATTACCAATGGGAAGT----TTTCC------A------------TCCCCAACCCG
i galGal4.chrUn_AADN03023623 C 0 C 0
s pelSin1.JH211051               22575 26 +    476004 --------------------------CGG--------AGGGAGT----CAGAG------C------------CCCCGGCCCA-
i pelSin1.JH211051           C 0 C 0
s apaSpi1.KB929104               21877 32 +    818693 --------------------------CAG--------AAGGAGG----CTGAAACTCTTC------------CACTCTTCCA-
i apaSpi1.KB929104           C 0 C 0
s xenTro7.KB021650            39350072 28 - 150913983 ---------------------------------AGAGGTGGACT----AGAGA------T------------GCTACAGGCTC
i xenTro7.KB021650           C 0 C 0
s fr3.chr10                    9063996 28 +   9126174 ---------------------------------GCATCCCAACA----TCTCC------A------------CTGTTCCCCTC
i fr3.chr10                  C 0 C 0
s oreNil2.chrLG8-24            3786128 28 -  29447820 ---------------------------------ccaccacaacc----acacc------a------------attacacactc
i oreNil2.chrLG8-24          C 0 C 0
s oryLat2.ultracontig146          3524 28 -    113228 ---------------------------------ACAGAGGAGCA----GTACT------C------------TGATTACAGTC
i oryLat2.ultracontig146     C 0 C 0
s gasAcu1.chrXI                 298751 28 -  16706052 ---------------------------------TCAGGGGAACA----TGATC------G------------TCTGGAGTCCT
i gasAcu1.chrXI              C 0 C 0
s danRer10.chr6               58382421 34 +  60272633 ---------------------------------------TAACC----TTCCC------ATGAAAAGTTGAGCTGTCATTAAC
i danRer10.chr6              C 0 C 0
s astMex1.KB882152              821442 29 +   2582946 -----------------------------------AAGCCAACA----TTACC------A---------GGGCTAGCAGTAAC
i astMex1.KB882152           C 0 C 0
e tetNig2.chr10                6379385  0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382  0 -   6649201 I
e hapBur1.JH425491              252157  0 -   1273513 I
e neoBri1.JH422308             3491820  0 -   5414369 I
e araMac1.AOUJ01470298             637  0 -       895 I
e takFla1.KE121866              208936  0 +    220559 C
e anoCar2.chr1               148577473  4 + 263920458 I
e zonAlb1.KB913045            12582000 6532 +  16390125 T
e allMis1.JH739658               38113 134 -    691381 I
e falPer1.KB390952             2753956  0 -  18327016 I
e falChe1.KB397350             1707310  0 -   3649919 I
e macEug2.GL124958               26121  0 -     59456 I
e melGal1.chr7                34310641  0 -  38723565 I
e anaPla1.KB742696             1254472  0 -   1270250 I
e amaVit1.AOCU01222764            1324  0 -      1397 I
e cheMyd1.KB605988              134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1      105736  1 +    779542 I
e melUnd1.JH556573              751858  2 +  10614383 I
e rheMac3.chr8                61690256 4519 + 150158102 T
e chlSab2.chr8                53284695 4759 + 139301422 T

a score=-519824.000000
s hg38.chr8_KI270814v1_alt      113615 46 +    141812 CCA--GTAAAGAAAC----TGG--------------CCAT---CTCC------TGC-----------C---TCTCAGAATGAG-GA---TACA
s panTro4.chr8                55016083 46 + 143986469 CCA--GTAAAGAAAC----TGG--------------CCAT---CTCC------TGC-----------C---TCTCAGAATGAG-GA---TACA
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59083091 46 + 153482349 CCA--GTAAAGAAAC----TGA--------------CCAT---CTCC------TGC-----------C---TCTCAGAATGAG-AA---TACA
i ponAbe2.chr8               C 0 C 0
s macFas5.chr8                88462916 46 - 146850525 TCT--GAGAAAGATC----TAG--------------CTAT---CTCT------AGC-----------C---TTTCAGAAGGGA-AC---CTCA
i macFas5.chr8               C 0 C 0
s ornAna1.Contig1391            114489 45 -    174025 TGC--TCTGAGGAAC----TCA--------------TTGT---TCAT------AGC-----------C---TCT--GCTTGAGCAG---CTTG
i ornAna1.Contig1391         C 0 C 0
s colLiv1.KB375822             2439455 35 +   2691611 ACC--CAAGCACAAC----TGA--------------CACT---GCCC------ACC-----------C---TCA---------------CCCA
i colLiv1.KB375822           C 0 C 0
s ficAlb2.chr4A               19371030 52 +  21182716 AAT--CTCACAGGTC----TGA--------------ATCT---CACAGATGTGAAT-----------C---TCACAGATATGA-AT---CTCA
i ficAlb2.chr4A              C 0 C 0
s geoFor1.JH740417               47293 46 -     63145 AAA--CCAAGGGATT----TCA--------------TCTT---TTCC------ACC-----------C---TTAAACCAAGGA-AT---TTCA
i geoFor1.JH740417           C 0 C 0
s taeGut2.chrUn_EQ837326          1433 47 -      4984 -----CCAAGAGGGTCCTACCA--------------GCCT---CCAA------ACC-----------C---TCCAAGAGGGTC-CT---ACCA
i taeGut2.chrUn_EQ837326     C 0 C 0
s pseHum1.KB221275             1872676 50 +   2017280 -----TTGGGAGGGGTTTGTGG--------------TCAT---CTCC------ATC-----------C---CTTGGGAGGGGT-TTGTGCTCA
i pseHum1.KB221275           C 0 C 0
s galGal4.chrUn_AADN03023623      1877 48 -      5081 TTA--ATGGAGGAGT----TTT--------------CCAT---CCCC------AAC-----------CC-ATTAATGATGGGG-TT---TTCC
i galGal4.chrUn_AADN03023623 C 0 C 0
s pelSin1.JH211051               22601 34 +    476004 -----GCGGCGGAGG----GAG--------------TCAGAGCCCCC------GGC-----------C------CAGGAG-------------
i pelSin1.JH211051           C 0 C 0
s apaSpi1.KB929104               21909 43 +    818693 -----GCAGGAGACC----AAA--------------TCTG---TCCC------AGT-----------C---TTTCAGAAGGCG-GC---TGAA
i apaSpi1.KB929104           C 0 C 0
s xenTro7.KB021650            39350100 46 - 150913983 TTA--GAGGTGGACT----AGA--------------GATG---CTAC------AGC-----------C---TCTTAGAGGTGG-AC---TAGA
i xenTro7.KB021650           C 0 C 0
s fr3.chr10                    9064024 39 +   9126174 CAG--CATCTGAACA----G-----------GGA--CCCT---CCCC------TGCCTCAGCATCCC--------------------------
i fr3.chr10                  C 0 T 346
s oreNil2.chrLG8-24            3786156 26 -  29447820 cac--t------------------------------ccac---ccac------TACGTCATCTTCCA--------------------------
i oreNil2.chrLG8-24          C 0 I 14
s oryLat2.ultracontig146          3552 44 -    113228 TGA--CAGAGGAGCA----GTA------CTCTGA--TTAC---AGTC------TGACAGAGGACCAG--------------------------
i oryLat2.ultracontig146     C 0 I 4
s gasAcu1.chrXI                 298779 46 -  16706052 CCT--CAGGAGAACA----TGA---ACGTCTGGA--GTCT---TCCT------CAGGGGAACATGA---------------------------
i gasAcu1.chrXI              C 0 C 0
s danRer10.chr6               58382455 39 +  60272633 CAA--TCAGAAAGTA----ATATTCAACCTTGAA--AGCC---AATC------AGA-------------------------------------
i danRer10.chr6              C 0 C 0
s astMex1.KB882152              821471 40 +   2582946 AAGACCCACAGAGTA----ACA---AGACACAAAGTAACA---AAAC------CAA-------------------------------------
i astMex1.KB882152           C 0 C 0
s petMar2.GL478800               10020 41 +    213094 CCG--GTAAAAAGTC----AAA--------------GCCT---CTCG------CTC-----------GAGATGAATGAAGG------------
i petMar2.GL478800           N 0 C 0
e tetNig2.chr10                6379385  0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382  0 -   6649201 I
e hapBur1.JH425491              252157  0 -   1273513 I
e neoBri1.JH422308             3491820  0 -   5414369 I
e araMac1.AOUJ01470298             637  0 -       895 I
e takFla1.KE121866              208936  0 +    220559 C
e anoCar2.chr1               148577473  4 + 263920458 I
e zonAlb1.KB913045            12582000 6532 +  16390125 T
e allMis1.JH739658               38113 134 -    691381 I
e falPer1.KB390952             2753956  0 -  18327016 I
e falChe1.KB397350             1707310  0 -   3649919 I
e macEug2.GL124958               26121  0 -     59456 I
e melGal1.chr7                34310641  0 -  38723565 I
e anaPla1.KB742696             1254472  0 -   1270250 I
e amaVit1.AOCU01222764            1324  0 -      1397 I
e cheMyd1.KB605988              134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1      105736  1 +    779542 I
e melUnd1.JH556573              751858  2 +  10614383 I
e rheMac3.chr8                61690256 4519 + 150158102 T
e chlSab2.chr8                53284695 4759 + 139301422 T

a score=-204737.000000
s hg38.chr8_KI270814v1_alt      113661 23 +    141812 CCACCTCCA--------GACTCTCAGAAGAG--
s panTro4.chr8                55016129 23 + 143986469 CCATCTCCA--------GACTCTCAGAAGAG--
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59083137 23 + 153482349 CCATCTCCA--------GACTCTCAGAAGAG--
i ponAbe2.chr8               C 0 C 0
s macFas5.chr8                88462962 23 - 146850525 CCTTCTCTA--------TACTCTTAGAAGGG--
i macFas5.chr8               C 0 C 0
s ornAna1.Contig1391            114534 23 -    174025 TCTCTTACA--------TCCTCCACTCTGAG--
i ornAna1.Contig1391         C 0 C 0
s colLiv1.KB375822             2439490 15 +   2691611 --AGCACAA--------------CTGACACT--
i colLiv1.KB375822           C 0 C 0
s ficAlb2.chr4A               19371082 21 +  21182716 -------CAGGTC---TGAATCTCACAGATG--
i ficAlb2.chr4A              C 0 C 0
s geoFor1.JH740417               47339 26 -     63145 --CCCTGCAGGGA---TAAGGAGTGAAGAGG--
i geoFor1.JH740417           C 0 C 0
s taeGut2.chrUn_EQ837326          1480 21 -      4984 --GCCTCCA--------AACCCTCCAAGAGG--
i taeGut2.chrUn_EQ837326     C 0 C 0
s pseHum1.KB221275             1872726 18 +   2017280 ---TCTCCA----------TCCCTTGGGATG--
i pseHum1.KB221275           C 0 C 0
s galGal4.chrUn_AADN03023623      1925 21 -      5081 --ATCCCCA--------ACCCATTAACGATG--
i galGal4.chrUn_AADN03023623 C 0 C 0
s pelSin1.JH211051               22635  6 +    476004 -------------------------CGGAGG--
i pelSin1.JH211051           C 0 C 0
s apaSpi1.KB929104               21952 21 +    818693 --GCTCTCC--------CATCCTTCCAGAGG--
i apaSpi1.KB929104           C 0 C 0
s xenTro7.KB021650            39350146 23 - 150913983 GATGCTACA--------GCCTCTTAGAGGTG--
i xenTro7.KB021650           C 0 T 210
s fr3.chr10                    9063717 12 +   9126174 -------------------TCCCCTCCAGCA--
i fr3.chr10                  T 346 I 9
s takFla1.KE121866              208936 12 +    220559 -------------------TCCCCTCCAGCA--
i takFla1.KE121866           C 0 I 9
s oreNil2.chrLG8-24            3786196 12 -  29447820 -------------------CCCACCCCAACA--
i oreNil2.chrLG8-24          I 14 I 10
s oryLat2.ultracontig146          3600 10 -    113228 -------------------CTGATTACAG----
i oryLat2.ultracontig146     I 4 I 10
s gasAcu1.chrXI                 298825 12 -  16706052 -------------------ACGTCTAGAGTC--
i gasAcu1.chrXI              C 0 I 11
s danRer10.chr6               58382494 11 +  60272633 --------------------TTACATATGCA--
i danRer10.chr6              C 0 I 24
s astMex1.KB882152              821511 11 +   2582946 --------------------CAATACCAGGA--
i astMex1.KB882152           C 0 I 27
s petMar2.GL478800               10061 23 +    213094 ----------AAATATtcagcatcatcagcgcc
i petMar2.GL478800           C 0 C 0
e tetNig2.chr10                6379385  0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382  0 -   6649201 I
e hapBur1.JH425491              252157  0 -   1273513 I
e neoBri1.JH422308             3491820  0 -   5414369 I
e araMac1.AOUJ01470298             637  0 -       895 I
e anoCar2.chr1               148577473  4 + 263920458 I
e zonAlb1.KB913045            12582000 6532 +  16390125 T
e allMis1.JH739658               38113 134 -    691381 I
e falPer1.KB390952             2753956  0 -  18327016 I
e falChe1.KB397350             1707310  0 -   3649919 I
e macEug2.GL124958               26121  0 -     59456 I
e melGal1.chr7                34310641  0 -  38723565 I
e anaPla1.KB742696             1254472  0 -   1270250 I
e amaVit1.AOCU01222764            1324  0 -      1397 I
e cheMyd1.KB605988              134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1      105736  1 +    779542 I
e melUnd1.JH556573              751858  2 +  10614383 I
e rheMac3.chr8                61690256 4519 + 150158102 T
e chlSab2.chr8                53284695 4759 + 139301422 T

a score=1349.000000
s hg38.chr8_KI270814v1_alt      113684 1 +    141812 A
s panTro4.chr8                55016152 1 + 143986469 A
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59083160 1 + 153482349 A
i ponAbe2.chr8               C 0 C 0
s macFas5.chr8                88462985 1 - 146850525 A
i macFas5.chr8               C 0 C 0
s ornAna1.Contig1391            114557 1 -    174025 G
i ornAna1.Contig1391         C 0 C 0
s colLiv1.KB375822             2439505 1 +   2691611 G
i colLiv1.KB375822           C 0 C 0
s ficAlb2.chr4A               19371103 1 +  21182716 T
i ficAlb2.chr4A              C 0 C 0
s geoFor1.JH740417               47365 1 -     63145 G
i geoFor1.JH740417           C 0 C 0
s taeGut2.chrUn_EQ837326          1501 1 -      4984 G
i taeGut2.chrUn_EQ837326     C 0 C 0
s pseHum1.KB221275             1872744 1 +   2017280 G
i pseHum1.KB221275           C 0 C 0
s galGal4.chrUn_AADN03023623      1946 1 -      5081 G
i galGal4.chrUn_AADN03023623 C 0 C 0
s pelSin1.JH211051               22641 1 +    476004 G
i pelSin1.JH211051           C 0 C 0
s apaSpi1.KB929104               21973 1 +    818693 G
i apaSpi1.KB929104           C 0 C 0
s fr3.chr10                    9063738 1 +   9126174 G
i fr3.chr10                  I 9 C 0
s takFla1.KE121866              208957 1 +    220559 G
i takFla1.KE121866           I 9 C 0
s oreNil2.chrLG8-24            3786218 1 -  29447820 C
i oreNil2.chrLG8-24          I 10 C 0
s oryLat2.ultracontig146          3620 1 -    113228 G
i oryLat2.ultracontig146     I 10 C 0
s gasAcu1.chrXI                 298848 1 -  16706052 G
i gasAcu1.chrXI              I 11 C 0
s danRer10.chr6               58382529 1 +  60272633 A
i danRer10.chr6              I 24 C 0
s astMex1.KB882152              821549 1 +   2582946 A
i astMex1.KB882152           I 27 C 0
s petMar2.GL478800               10084 1 +    213094 a
i petMar2.GL478800           C 0 C 0
e xenTro7.KB021650            39350169 210 - 150913983 T
e tetNig2.chr10                6379385 0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382 0 -   6649201 I
e hapBur1.JH425491              252157 0 -   1273513 I
e neoBri1.JH422308             3491820 0 -   5414369 I
e araMac1.AOUJ01470298             637 0 -       895 I
e anoCar2.chr1               148577473 4 + 263920458 I
e zonAlb1.KB913045            12582000 6532 +  16390125 T
e allMis1.JH739658               38113 134 -    691381 I
e falPer1.KB390952             2753956 0 -  18327016 I
e falChe1.KB397350             1707310 0 -   3649919 I
e macEug2.GL124958               26121 0 -     59456 I
e melGal1.chr7                34310641 0 -  38723565 I
e anaPla1.KB742696             1254472 0 -   1270250 I
e amaVit1.AOCU01222764            1324 0 -      1397 I
e cheMyd1.KB605988              134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1      105736 1 +    779542 I
e melUnd1.JH556573              751858 2 +  10614383 I
e rheMac3.chr8                61690256 4519 + 150158102 T
e chlSab2.chr8                53284695 4759 + 139301422 T

a score=-363802.000000
s hg38.chr8_KI270814v1_alt      113685 36 +    141812 GACTTGTCAT------------CCTCAGCTT---CTCAGAGAAG-A----C---------ACTCA
s panTro4.chr8                55016153 36 + 143986469 GACTTGTCAT------------TCTCAGCTT---CTCAGAGAAG-A----C---------ACTCA
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59083161 36 + 153482349 GACTTGTCAT------------CCCCAGCTT---CTCAGAGAAG-A----C---------ACTCA
i ponAbe2.chr8               C 0 C 0
s macFas5.chr8                88462986 36 - 146850525 GACTCCCAGT------------TTGCAGCAT---CTCAGCAGAA-A----A---------ACCTC
i macFas5.chr8               C 0 C 0
s ornAna1.Contig1391            114558 43 -    174025 TGCTCATCAT------------TCGCAGCCTCCACTCTGAGGAG-CTCGTC---------TCTTA
i ornAna1.Contig1391         C 0 C 0
s colLiv1.KB375822             2439506 30 +   2691611 C-----CCAC------------CCTCACCTA---A-TCACAACT-G----A---------CCCTG
i colLiv1.KB375822           C 0 I 31
s ficAlb2.chr4A               19371104 23 +  21182716 G-----AATC------------TCACAGATC-----------TG-A----A---------TCTCA
i ficAlb2.chr4A              C 0 I 14
s geoFor1.JH740417               47366 38 -     63145 C-----Tggg------------ccccagctc-----tgccagtg-g----aAAAGCAATTTCCCT
i geoFor1.JH740417           C 0 I 21
s taeGut2.chrUn_EQ837326          1502 35 -      4984 TCCCAGCAGC------------CCCCAAATC---A-CCCCAGAG-G----G---------TCCCA
i taeGut2.chrUn_EQ837326     C 0 I 16
s pseHum1.KB221275             1872745 34 +   2017280 G-TTTGTGGT------------GCTCATCTC---C-ATCCCTTG-G----G---------AGCGG
i pseHum1.KB221275           C 0 I 19
s galGal4.chrUn_AADN03023623      1947 36 -      5081 GGTTTTCCAT------------CCCCAACCC---ATTAACGATG-G----G---------GTTTT
i galGal4.chrUn_AADN03023623 C 0 T 718
s pelSin1.JH211051               22642 35 +    476004 AG-TCAGAGC------------CCCCGGCCC---AGCGGCGGAG-G----G---------AGTCA
i pelSin1.JH211051           C 0 I 12
s apaSpi1.KB929104               21974 36 +    818693 AGACCAAAGCTG----------TCCCAGTCT---TCCA--GAAG-C----A---------GACCA
i apaSpi1.KB929104           C 0 I 9
s xenTro7.KB021650            39349959 37 - 150913983 -----------GACTAGAGATACTACCGCTT---CTTAGAGGTG-G----A---------CTAGA
i xenTro7.KB021650           T 210 I 7
s fr3.chr10                    9063739 11 +   9126174 ----------------------------------------GACC-C----T---------TCCCT
i fr3.chr10                  C 0 I 6
s takFla1.KE121866              208958 11 +    220559 ----------------------------------------GACC-C----T---------TCCCT
i takFla1.KE121866           C 0 I 6
s oreNil2.chrLG8-24            3786219 12 -  29447820 ----------------------------------------TGCTAC----C---------ACAGT
i oreNil2.chrLG8-24          C 0 I 14
s oryLat2.ultracontig146          3621 11 -    113228 ----------------------------------------AGCA-G----T---------ACTCT
i oryLat2.ultracontig146     C 0 I 23
s gasAcu1.chrXI                 298849 11 -  16706052 ----------------------------------------GGGA-C----T---------TCCTC
i gasAcu1.chrXI              C 0 I 20
s danRer10.chr6               58382530 11 +  60272633 ----------------------------------------GACA-T----A---------ACCTT
i danRer10.chr6              C 0 I 23
s astMex1.KB882152              821550  7 +   2582946 ----------------------------------------GACA-C----A---------A----
i astMex1.KB882152           C 0 I 23
s petMar2.GL478800               10085 27 +    213094 ---tcatcgt------------catcatcat---ccctgccgcc-a-------------------
i petMar2.GL478800           C 0 C 0
e tetNig2.chr10                6379385  0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382  0 -   6649201 I
e hapBur1.JH425491              252157  0 -   1273513 I
e neoBri1.JH422308             3491820  0 -   5414369 I
e araMac1.AOUJ01470298             637  0 -       895 I
e anoCar2.chr1               148577473  4 + 263920458 I
e zonAlb1.KB913045            12582000 6532 +  16390125 T
e allMis1.JH739658               38113 134 -    691381 I
e falPer1.KB390952             2753956  0 -  18327016 I
e falChe1.KB397350             1707310  0 -   3649919 I
e macEug2.GL124958               26121  0 -     59456 I
e melGal1.chr7                34310641  0 -  38723565 I
e anaPla1.KB742696             1254472  0 -   1270250 I
e amaVit1.AOCU01222764            1324  0 -      1397 I
e cheMyd1.KB605988              134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1      105736  1 +    779542 I
e melUnd1.JH556573              751858  2 +  10614383 I
e rheMac3.chr8                61690256 4519 + 150158102 T
e chlSab2.chr8                53284695 4759 + 139301422 T

a score=-144421.000000
s hg38.chr8_KI270814v1_alt      113721 31 +    141812 CCATCTCCACTTTATTGGAAGAAAAGCTCAC
s panTro4.chr8                55016189 31 + 143986469 CCATCTCCACTTTATTGGAAGAAAAGCTCAC
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59083197 31 + 153482349 CCATCTCCACTTTATCGGGAGAAAAGCTCAC
i ponAbe2.chr8               C 0 C 0
s macFas5.chr8                88463022 31 - 146850525 CAGTCTCCAACCTTGTGGAGGAGGACCTCAC
i macFas5.chr8               C 0 C 0
s ornAna1.Contig1391            114601 24 -    174025 CAACCTCCGCTCT-------GAGGAGCTCGT
i ornAna1.Contig1391         C 0 C 0
s colLiv1.KB375822             2439567 19 +   2691611 CCACTTCt------------gaattattcag
i colLiv1.KB375822           I 31 n 31
s ficAlb2.chr4A               19371141 19 +  21182716 ACAGATCT------------GAATCTCACAG
i ficAlb2.chr4A              I 14 I 5
s geoFor1.JH740417               47425 19 -     63145 TTAGTCTG------------GGATGATGAAG
i geoFor1.JH740417           I 21 I 5
s taeGut2.chrUn_EQ837326          1553 15 -      4984 ----CCCA------------GAGGGTCCCAC
i taeGut2.chrUn_EQ837326     I 16 I 5
s pseHum1.KB221275             1872798 15 +   2017280 ----CTTG------------GGATGGGTTTG
i pseHum1.KB221275           I 19 I 5
s galGal4.chrUn_AADN03023623      1265 14 -      5081 -catccct------------gg----tgcag
i galGal4.chrUn_AADN03023623 T 718 I 5
s pelSin1.JH211051               22689 19 +    476004 CAGGAGCG------------GAGGGAGTCAG
i pelSin1.JH211051           I 12 I 5
s apaSpi1.KB929104               22019 19 +    818693 CAATTGAG------------GAGGAGAGCAA
i apaSpi1.KB929104           I 9 I 5
s xenTro7.KB021650            39350003 19 - 150913983 CAGCCTCT------------TAGAGGTGGAC
i xenTro7.KB021650           I 7 I 5
s fr3.chr10                    9063756  9 +   9126174 ----------------------GCATCCCAA
i fr3.chr10                  I 6 I 10
s takFla1.KE121866              208975  9 +    220559 ----------------------GCATCCCAA
i takFla1.KE121866           I 6 I 10
s oreNil2.chrLG8-24            3786245  9 -  29447820 ----------------------GTATTACAC
i oreNil2.chrLG8-24          I 14 I 14
s oryLat2.ultracontig146          3655  9 -    113228 ----------------------GTACTCTGA
i oryLat2.ultracontig146     I 23 I 23
s gasAcu1.chrXI                 298880  9 -  16706052 ----------------------ACGTTTCAC
i gasAcu1.chrXI              I 20 I 7
s danRer10.chr6               58382564  9 +  60272633 ----------------------GGCTTTTAT
i danRer10.chr6              I 23 I 11
s astMex1.KB882152              821580  9 +   2582946 ----------------------GACTAGGAG
i astMex1.KB882152           I 23 I 7
s petMar2.GL478800               10112 31 +    213094 ccatcatcgccatAGGCAACGAGAAATGCGG
i petMar2.GL478800           C 0 C 0
e tetNig2.chr10                6379385  0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382  0 -   6649201 I
e hapBur1.JH425491              252157  0 -   1273513 I
e neoBri1.JH422308             3491820  0 -   5414369 I
e araMac1.AOUJ01470298             637  0 -       895 I
e anoCar2.chr1               148577473  4 + 263920458 I
e zonAlb1.KB913045            12582000 6532 +  16390125 T
e allMis1.JH739658               38113 134 -    691381 I
e falPer1.KB390952             2753956  0 -  18327016 I
e falChe1.KB397350             1707310  0 -   3649919 I
e macEug2.GL124958               26121  0 -     59456 I
e melGal1.chr7                34310641  0 -  38723565 I
e anaPla1.KB742696             1254472  0 -   1270250 I
e amaVit1.AOCU01222764            1324  0 -      1397 I
e cheMyd1.KB605988              134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1      105736  1 +    779542 I
e melUnd1.JH556573              751858  2 +  10614383 I
e rheMac3.chr8                61690256 4519 + 150158102 T
e chlSab2.chr8                53284695 4759 + 139301422 T

a score=-44834.000000
s hg38.chr8_KI270814v1_alt      113752 2 +    141812 -AG
s panTro4.chr8                55016220 2 + 143986469 -AG
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59083228 2 + 153482349 -AG
i ponAbe2.chr8               C 0 C 0
s macFas5.chr8                88463053 2 - 146850525 -AG
i macFas5.chr8               C 0 C 0
s ornAna1.Contig1391            114625 2 -    174025 -TG
i ornAna1.Contig1391         C 0 C 0
s ficAlb2.chr4A               19371165 2 +  21182716 -AA
i ficAlb2.chr4A              I 5 C 0
s geoFor1.JH740417               47449 2 -     63145 -AT
i geoFor1.JH740417           I 5 C 0
s taeGut2.chrUn_EQ837326          1573 2 -      4984 -AC
i taeGut2.chrUn_EQ837326     I 5 C 0
s pseHum1.KB221275             1872818 2 +   2017280 -AT
i pseHum1.KB221275           I 5 C 0
s pelSin1.JH211051               22713 2 +    476004 -CC
i pelSin1.JH211051           I 5 C 0
s apaSpi1.KB929104               22043 2 +    818693 -AT
i apaSpi1.KB929104           I 5 C 0
s xenTro7.KB021650            39350027 2 - 150913983 -AT
i xenTro7.KB021650           I 5 C 0
s fr3.chr10                    9063775 1 +   9126174 -G-
i fr3.chr10                  I 10 I 13
s takFla1.KE121866              208994 1 +    220559 -G-
i takFla1.KE121866           I 10 I 13
s oreNil2.chrLG8-24            3786268 1 -  29447820 -G-
i oreNil2.chrLG8-24          I 14 I 25
s oryLat2.ultracontig146          3687 1 -    113228 -A-
i oryLat2.ultracontig146     I 23 I 12
s gasAcu1.chrXI                 298896 1 -  16706052 -T-
i gasAcu1.chrXI              I 7 I 15
s danRer10.chr6               58382584 1 +  60272633 -A-
i danRer10.chr6              I 11 I 13
s astMex1.KB882152              821596 1 +   2582946 -A-
i astMex1.KB882152           I 7 n 7
s petMar2.GL478800               10143 2 +    213094 AG-
i petMar2.GL478800           C 0 C 0
e tetNig2.chr10                6379385 0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382 0 -   6649201 I
e hapBur1.JH425491              252157 0 -   1273513 I
e neoBri1.JH422308             3491820 0 -   5414369 I
e araMac1.AOUJ01470298             637 0 -       895 I
e anoCar2.chr1               148577473 4 + 263920458 I
e zonAlb1.KB913045            12582000 6532 +  16390125 T
e colLiv1.KB375822             2439586 31 +   2691611 I
e allMis1.JH739658               38113 134 -    691381 I
e falPer1.KB390952             2753956 0 -  18327016 I
e falChe1.KB397350             1707310 0 -   3649919 I
e macEug2.GL124958               26121 0 -     59456 I
e galGal4.chrUn_AADN03023623      1279 5 -      5081 I
e melGal1.chr7                34310641 0 -  38723565 I
e anaPla1.KB742696             1254472 0 -   1270250 I
e amaVit1.AOCU01222764            1324 0 -      1397 I
e cheMyd1.KB605988              134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1      105736 1 +    779542 I
e melUnd1.JH556573              751858 2 +  10614383 I
e rheMac3.chr8                61690256 4519 + 150158102 T
e chlSab2.chr8                53284695 4759 + 139301422 T

a score=-136807.000000
s hg38.chr8_KI270814v1_alt      113754 12 +    141812 ------------------------------------------------------------------------TCTCCAGCCTC-T
s panTro4.chr8                55016222 12 + 143986469 ------------------------------------------------------------------------TCTCCAGCCTC-T
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59083230 12 + 153482349 ------------------------------------------------------------------------TCTCCAGCCTC-T
i ponAbe2.chr8               C 0 C 0
s macFas5.chr8                88463055 12 - 146850525 ------------------------------------------------------------------------TCCTGGGCTTC-T
i macFas5.chr8               C 0 C 0
s ornAna1.Contig1391            114627 12 -    174025 ------------------------------------------------------------------------TTCCCAGCCTG-T
i ornAna1.Contig1391         C 0 C 0
s ficAlb2.chr4A               19371167  6 +  21182716 ------------------------------------------------------------------------TC-----TCAC--
i ficAlb2.chr4A              C 0 C 0
s geoFor1.JH740417               47451 11 -     63145 ------------------------------------------------------------------------TCCTGGGCCTG--
i geoFor1.JH740417           C 0 C 0
s taeGut2.chrUn_EQ837326          1575 11 -      4984 ------------------------------------------------------------------------CAAACGTCCCC--
i taeGut2.chrUn_EQ837326     C 0 C 0
s pseHum1.KB221275             1872820 11 +   2017280 ------------------------------------------------------------------------CTCCATCCCTT--
i pseHum1.KB221275           C 0 C 0
s pelSin1.JH211051               22715 11 +    476004 ------------------------------------------------------------------------GGCCCAGCGGC--
i pelSin1.JH211051           C 0 C 0
s apaSpi1.KB929104               22045 12 +    818693 ------------------------------------------------------------------------GTCCTTGCCTTC-
i apaSpi1.KB929104           C 0 C 0
s xenTro7.KB021650            39350029 12 - 150913983 ------------------------------------------------------------------------GCTACAGCCTC-T
i xenTro7.KB021650           C 0 C 0
s fr3.chr10                    9063789  3 +   9126174 ------------------------------------------------------------------------TCT----------
i fr3.chr10                  I 13 I 2
s takFla1.KE121866              209008  3 +    220559 ------------------------------------------------------------------------TCT----------
i takFla1.KE121866           I 13 I 2
s oreNil2.chrLG8-24            3786294  3 -  29447820 ------------------------------------------------------------------------TCT----------
i oreNil2.chrLG8-24          I 25 I 2
s oryLat2.ultracontig146          3700  3 -    113228 ------------------------------------------------------------------------TCT----------
i oryLat2.ultracontig146     I 12 I 2
s gasAcu1.chrXI                 298912  3 -  16706052 ------------------------------------------------------------------------TCT----------
i gasAcu1.chrXI              I 15 I 2
s danRer10.chr6               58382598  3 +  60272633 ------------------------------------------------------------------------GCC----------
i danRer10.chr6              I 13 I 2
s astMex1.KB882255               17704  3 -   1586233 ------------------------------------------------------------------------CTC----------
i astMex1.KB882255           T 420 I 2
s petMar2.GL478800               10145 83 +    213094 TCTTTATTTAATGACTTTAGGGTGATTATGGGGCCAAAATAAATGACTCAATGATATCCCACTGCACTTTACCCCCAAGCACT--
i petMar2.GL478800           C 0 C 0
e tetNig2.chr10                6379385  0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382  0 -   6649201 I
e hapBur1.JH425491              252157  0 -   1273513 I
e neoBri1.JH422308             3491820  0 -   5414369 I
e araMac1.AOUJ01470298             637  0 -       895 I
e anoCar2.chr1               148577473  4 + 263920458 I
e zonAlb1.KB913045            12582000 6532 +  16390125 T
e colLiv1.KB375822             2439586 31 +   2691611 I
e allMis1.JH739658               38113 134 -    691381 I
e falPer1.KB390952             2753956  0 -  18327016 I
e falChe1.KB397350             1707310  0 -   3649919 I
e macEug2.GL124958               26121  0 -     59456 I
e galGal4.chrUn_AADN03023623      1279  5 -      5081 I
e melGal1.chr7                34310641  0 -  38723565 I
e anaPla1.KB742696             1254472  0 -   1270250 I
e amaVit1.AOCU01222764            1324  0 -      1397 I
e cheMyd1.KB605988              134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1      105736  1 +    779542 I
e melUnd1.JH556573              751858  2 +  10614383 I
e rheMac3.chr8                61690256 4519 + 150158102 T
e chlSab2.chr8                53284695 4759 + 139301422 T

a score=-81258.000000
s hg38.chr8_KI270814v1_alt      113766 9 +    141812 ---CAGAAGAAA
s panTro4.chr8                55016234 9 + 143986469 ---CAGAAGAAA
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59083242 9 + 153482349 ---CAGAAGAAA
i ponAbe2.chr8               C 0 C 0
s ficAlb2.chr4A               19371173 6 +  21182716 -----AGATAT-
i ficAlb2.chr4A              C 0 C 0
s geoFor1.JH740417               47462 6 -     63145 -----GGAGGG-
i geoFor1.JH740417           C 0 C 0
s taeGut2.chrUn_EQ837326          1586 7 -      4984 -----AGAGGGT
i taeGut2.chrUn_EQ837326     C 0 C 0
s pseHum1.KB221275             1872831 7 +   2017280 -----GGGAGGG
i pseHum1.KB221275           C 0 C 0
s galGal4.chrUn_AADN03023623      1284 1 -      5081 -----------c
i galGal4.chrUn_AADN03023623 I 5 C 0
s pelSin1.JH211051               22726 6 +    476004 -----GGAGGG-
i pelSin1.JH211051           C 0 C 0
s apaSpi1.KB929104               22057 8 +    818693 ---CAGGAGGA-
i apaSpi1.KB929104           C 0 C 0
s xenTro7.KB021650            39350041 9 - 150913983 ---TAGAGGTGG
i xenTro7.KB021650           C 0 C 0
s fr3.chr10                    9063794 7 +   9126174 ---ACAGGGA--
i fr3.chr10                  I 2 I 10
s takFla1.KE121866              209013 7 +    220559 ---ACAGGGA--
i takFla1.KE121866           I 2 I 10
s oreNil2.chrLG8-24            3786299 7 -  29447820 ---TGAAGGA--
i oreNil2.chrLG8-24          I 2 I 29
s oryLat2.ultracontig146          3705 7 -    113228 ---TAGAGGA--
i oryLat2.ultracontig146     I 2 I 131
s gasAcu1.chrXI                 298917 7 -  16706052 ---TTGGGAA--
i gasAcu1.chrXI              I 2 T 565
s danRer10.chr6               58382603 6 +  60272633 ---TCAGAG---
i danRer10.chr6              I 2 I 1
s astMex1.KB882255               17709 6 -   1586233 ---TTGGAG---
i astMex1.KB882255           I 2 C 0
s petMar2.GL478800               10228 9 +    213094 CAGCTGGGA---
i petMar2.GL478800           C 0 C 0
e ornAna1.Contig1391            114639 0 -    174025 C
e tetNig2.chr10                6379385 0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382 0 -   6649201 I
e hapBur1.JH425491              252157 0 -   1273513 I
e neoBri1.JH422308             3491820 0 -   5414369 I
e araMac1.AOUJ01470298             637 0 -       895 I
e anoCar2.chr1               148577473 4 + 263920458 I
e zonAlb1.KB913045            12582000 6532 +  16390125 T
e colLiv1.KB375822             2439586 31 +   2691611 I
e allMis1.JH739658               38113 134 -    691381 I
e falPer1.KB390952             2753956 0 -  18327016 I
e falChe1.KB397350             1707310 0 -   3649919 I
e macEug2.GL124958               26121 0 -     59456 I
e melGal1.chr7                34310641 0 -  38723565 I
e anaPla1.KB742696             1254472 0 -   1270250 I
e amaVit1.AOCU01222764            1324 0 -      1397 I
e cheMyd1.KB605988              134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1      105736 1 +    779542 I
e melUnd1.JH556573              751858 2 +  10614383 I
e rheMac3.chr8                61690256 4519 + 150158102 T
e macFas5.chr8                88463067 0 - 146850525 C
e chlSab2.chr8                53284695 4759 + 139301422 T

a score=27.000000
s hg38.chr8_KI270814v1_alt      113775 1 +    141812 A
s panTro4.chr8                55016243 1 + 143986469 A
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59083251 1 + 153482349 A
i ponAbe2.chr8               C 0 C 0
s taeGut2.chrUn_EQ837326          1593 1 -      4984 T
i taeGut2.chrUn_EQ837326     C 0 C 0
s pseHum1.KB221275             1872838 1 +   2017280 G
i pseHum1.KB221275           C 0 C 0
s galGal4.chrUn_AADN03023623      1285 1 -      5081 g
i galGal4.chrUn_AADN03023623 C 0 C 0
s xenTro7.KB021650            39350050 1 - 150913983 A
i xenTro7.KB021650           C 0 C 0
s danRer10.chr6               58382610 1 +  60272633 A
i danRer10.chr6              I 1 I 2
s astMex1.KB882255               17715 1 -   1586233 G
i astMex1.KB882255           C 0 I 2
s petMar2.GL478800               10237 1 +    213094 A
i petMar2.GL478800           C 0 C 0
e oreNil2.chrLG8-24            3786306 29 -  29447820 I
e gasAcu1.chrXI                 298924 565 -  16706052 T
e ornAna1.Contig1391            114639 0 -    174025 C
e tetNig2.chr10                6379385 0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382 0 -   6649201 I
e hapBur1.JH425491              252157 0 -   1273513 I
e neoBri1.JH422308             3491820 0 -   5414369 I
e araMac1.AOUJ01470298             637 0 -       895 I
e oryLat2.ultracontig146          3712 131 -    113228 I
e takFla1.KE121866              209020 10 +    220559 I
e fr3.chr10                    9063801 10 +   9126174 I
e ficAlb2.chr4A               19371179 0 +  21182716 C
e anoCar2.chr1               148577473 4 + 263920458 I
e zonAlb1.KB913045            12582000 6532 +  16390125 T
e colLiv1.KB375822             2439586 31 +   2691611 I
e allMis1.JH739658               38113 134 -    691381 I
e falPer1.KB390952             2753956 0 -  18327016 I
e falChe1.KB397350             1707310 0 -   3649919 I
e macEug2.GL124958               26121 0 -     59456 I
e geoFor1.JH740417               47468 0 -     63145 C
e melGal1.chr7                34310641 0 -  38723565 I
e anaPla1.KB742696             1254472 0 -   1270250 I
e amaVit1.AOCU01222764            1324 0 -      1397 I
e apaSpi1.KB929104               22065 0 +    818693 C
e cheMyd1.KB605988              134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1      105736 1 +    779542 I
e pelSin1.JH211051               22732 0 +    476004 C
e melUnd1.JH556573              751858 2 +  10614383 I
e rheMac3.chr8                61690256 4519 + 150158102 T
e macFas5.chr8                88463067 0 - 146850525 C
e chlSab2.chr8                53284695 4759 + 139301422 T

a score=-427981.000000
s hg38.chr8_KI270814v1_alt      113776 53 +    141812 TCTGGTC--ATCTCCAGC--------------ATC---TC--------------------AGAGG-----AGCACTTCTCCTT---------CTCCAGCCTCTCAG
s panTro4.chr8                55016244 53 + 143986469 TCTGGTC--ATCTCCAGC--------------ATC---TC--------------------AGAGG-----AGCACTTCTCCTT---------CTCCAGCCTCTCAG
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59083252 53 + 153482349 TCTGATC--ATCTCCAGC--------------ATC---TC--------------------AGAGG-----AGCACTTCTCCTT---------CTCCAGCCTCTCAG
i ponAbe2.chr8               C 0 C 0
s ornAna1.Contig1391            114639 36 -    174025 ---------------------------------AC---TC--------------------TGAGG-----AGCTTGTCTCTTA---------CATCCTCCACTCTG
i ornAna1.Contig1391         C 0 C 0
s ficAlb2.chr4A               19371179 39 +  21182716 ----------------GA--------------ATC---TC--------------------ACAGGTC---TGAATCTCACAGG---------TCTGAATCTCAC--
i ficAlb2.chr4A              C 0 C 0
s geoFor1.JH740417               47468 32 -     63145 ----------------GA--------------ATTTGACC--------------------TCAGg-----aagctctcccag-------------------ctccc
i geoFor1.JH740417           C 0 n 0
s taeGut2.chrUn_EQ837326          1594 52 -      4984 CCAACAG----CACCCAA--------------ATC--ACC--------------------CCAGA-----GGGTCCTACCAGT---------CACTAAGCCCCCCC
i taeGut2.chrUn_EQ837326     C 0 I 2
s pseHum1.KB221275             1872839 52 +   2017280 TTTGTGG---TCATCTCC--------------ATC---CC--------------------TTGGG-----AGGGGTTTGTGGT---------CATCTCCACCCCTT
i pseHum1.KB221275           C 0 C 0
s galGal4.chrUn_AADN03023623      1286 56 -      5081 tctccat--cccatccca--------------atcctatc--------------------cccgg-----tgccgatctccat---------cccatcccatccca
i galGal4.chrUn_AADN03023623 C 0 I 21
s pelSin1.JH211051               22732 47 +    476004 -----------AGTCAGA--------------GCC---CCC-----------------GGCCCAG-----GAGCGGAGGGAGT---------CAGAGCCCCCGGCC
i pelSin1.JH211051           C 0 I 2
s apaSpi1.KB929104               22065 49 +    818693 -----------CAGCAAA--------------GCC-AACCT-----------------GGTCCAA-----AATGATACCAAGG---------CTGGTCCATCCTTC
i apaSpi1.KB929104           C 0 I 3
s xenTro7.KB021650            39350051 53 - 150913983 TTAGAGA--TGCTACAGC--------------CTC---TT--------------------AGAGG-----TGGACTAGAGATG---------CTACAGGCTCTTAG
i xenTro7.KB021650           C 0 C 0
s fr3.chr10                    9063811 44 +   9126174 ---CCTC--AGCATCCCA--------------ACA---TC--------------------TCCGC-----TGTTCCCCTCCAG---------CATCTGAA------
i fr3.chr10                  I 10 I 1
s takFla1.KE121866              209030 44 +    220559 ---CCTC--AGCATCCCA--------------ACA---TC--------------------TCCGC-----TGTTCCCCTCCAG---------CATCTGAA------
i takFla1.KE121866           I 10 I 1
s oreNil2.chrLG8-24            3786335 74 -  29447820 ---CCTCCAGTCATCCTGTATCTAGTCTGGATACA---GC--------------------TTCGCCCAAGCAGACCTCTCAAGCTACAGCTTCGCCCAAG------
i oreNil2.chrLG8-24          I 29 I 1
s oryLat2.ultracontig146          3843 42 -    113228 ---ATTA----CAGTCTG--------------ACA---GA--------------------GGAGC-----AGTACTCTGATTA---------CAGTCTGA------
i oryLat2.ultracontig146     I 131 I 1
s danRer10.chr6               58382613 46 +  60272633 ---GATG--GGCTTCCAG--------------AAA---GCC-----------------AACCAGA-----AAGTAATATACA----------CAGTTGAC------
i danRer10.chr6              I 2 I 1
s astMex1.KB882255               17718 45 -   1586233 ---ACTT--CCTCTCCTG--------------AGC---CTC-----------------GATTTGA-----GGTAACTCTAC-----------CTCCTGAG------
i astMex1.KB882255           I 2 I 1
s petMar2.GL478800               10238 50 +    213094 ----------------------------------------TTTGGCTGAAATGGGCACATTGCGG-----AGAGTCTCTCTAC---------CGAGTCACCCAG--
i petMar2.GL478800           C 0 C 0
e gasAcu1.chrXI                 298924 565 -  16706052 T
e tetNig2.chr10                6379385  0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382  0 -   6649201 I
e hapBur1.JH425491              252157  0 -   1273513 I
e neoBri1.JH422308             3491820  0 -   5414369 I
e araMac1.AOUJ01470298             637  0 -       895 I
e anoCar2.chr1               148577473  4 + 263920458 I
e zonAlb1.KB913045            12582000 6532 +  16390125 T
e colLiv1.KB375822             2439586 31 +   2691611 I
e allMis1.JH739658               38113 134 -    691381 I
e falPer1.KB390952             2753956  0 -  18327016 I
e falChe1.KB397350             1707310  0 -   3649919 I
e macEug2.GL124958               26121  0 -     59456 I
e melGal1.chr7                34310641  0 -  38723565 I
e anaPla1.KB742696             1254472  0 -   1270250 I
e amaVit1.AOCU01222764            1324  0 -      1397 I
e cheMyd1.KB605988              134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1      105736  1 +    779542 I
e melUnd1.JH556573              751858  2 +  10614383 I
e rheMac3.chr8                61690256 4519 + 150158102 T
e macFas5.chr8                88463067  0 - 146850525 C
e chlSab2.chr8                53284695 4759 + 139301422 T

a score=-20990.000000
s hg38.chr8_KI270814v1_alt      113829 5 +    141812 AGGGT
s panTro4.chr8                55016297 5 + 143986469 AGGGT
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59083305 5 + 153482349 AGGGT
i ponAbe2.chr8               C 0 C 0
s ornAna1.Contig1391            114675 1 -    174025 A----
i ornAna1.Contig1391         C 0 C 0
s ficAlb2.chr4A               19371218 5 +  21182716 AGATC
i ficAlb2.chr4A              C 0 I 1
s geoFor1.JH740659                8403 5 -     25510 AGGGA
i geoFor1.JH740659           n 0 I 43
s taeGut2.chrUn_EQ837326          1648 5 -      4984 AGGGT
i taeGut2.chrUn_EQ837326     I 2 n 2
s pseHum1.KB221275             1872891 4 +   2017280 -GGGA
i pseHum1.KB221275           C 0 C 0
s galGal4.chrUn_AADN03023623      1363 2 -      5081 TG---
i galGal4.chrUn_AADN03023623 I 21 C 0
s apaSpi1.KB929104               22117 1 +    818693 ----A
i apaSpi1.KB929104           I 3 I 4
s xenTro7.KB021650            39350104 4 - 150913983 AGGT-
i xenTro7.KB021650           C 0 C 0
s fr3.chr10                    9063856 3 +   9126174 AGG--
i fr3.chr10                  I 1 C 0
s takFla1.KE121866              209075 3 +    220559 AGG--
i takFla1.KE121866           I 1 C 0
s oreNil2.chrLG8-24            3786410 3 -  29447820 AGA--
i oreNil2.chrLG8-24          I 1 C 0
s oryLat2.ultracontig146          3886 3 -    113228 AGA--
i oryLat2.ultracontig146     I 1 C 0
s petMar2.GL478800               10288 5 +    213094 AGGGG
i petMar2.GL478800           C 0 C 0
e gasAcu1.chrXI                 298924 565 -  16706052 T
e danRer10.chr6               58382659 1 +  60272633 I
e tetNig2.chr10                6379385 0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382 0 -   6649201 I
e hapBur1.JH425491              252157 0 -   1273513 I
e neoBri1.JH422308             3491820 0 -   5414369 I
e araMac1.AOUJ01470298             637 0 -       895 I
e astMex1.KB882255               17763 1 -   1586233 I
e anoCar2.chr1               148577473 4 + 263920458 I
e zonAlb1.KB913045            12582000 6532 +  16390125 T
e colLiv1.KB375822             2439586 31 +   2691611 I
e allMis1.JH739658               38113 134 -    691381 I
e falPer1.KB390952             2753956 0 -  18327016 I
e falChe1.KB397350             1707310 0 -   3649919 I
e macEug2.GL124958               26121 0 -     59456 I
e melGal1.chr7                34310641 0 -  38723565 I
e anaPla1.KB742696             1254472 0 -   1270250 I
e amaVit1.AOCU01222764            1324 0 -      1397 I
e cheMyd1.KB605988              134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1      105736 1 +    779542 I
e pelSin1.JH211051               22779 2 +    476004 I
e melUnd1.JH556573              751858 2 +  10614383 I
e rheMac3.chr8                61690256 4519 + 150158102 T
e macFas5.chr8                88463067 0 - 146850525 C
e chlSab2.chr8                53284695 4759 + 139301422 T

a score=-171925.000000
s hg38.chr8_KI270814v1_alt        113834 36 +    141812 GGAAC---TTGTAGT-CTTTAGCCT-------------CTTAGAGGAGAAACT---
s panTro4.chr8                  55016302 36 + 143986469 GGAAC---TTGTAGT-CTTTAGCCT-------------CTTAGAGGAGAAACT---
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59083310 36 + 153482349 GGAAC---TTGTAGT-CTTTAGCCT-------------CTTAGAGGAGAAACA---
i ponAbe2.chr8                 C 0 C 0
s sarHar1.chr3_GL849771_random    179318 32 -    558665 GGAGC---TGGCTGT-GTTTAGCC-----------------AGAAGGAAAGAA---
i sarHar1.chr3_GL849771_random N 0 C 0
s ornAna1.Contig1391              114676 36 -    174025 GGAGC---TCATCGT-CCACAGCCTC----------CACTTTGAGGAGCT------
i ornAna1.Contig1391           C 0 C 0
s galGal4.chrUn_AADN03023623        1365  3 -      5081 -----------------------------------------------ACT------
i galGal4.chrUn_AADN03023623   C 0 C 0
s pelSin1.JH211051                 22781 14 +    476004 ----------GCGGC--------------------------GGAGGGAGT------
i pelSin1.JH211051             I 2 C 0
s apaSpi1.KB929104                 22122 33 +    818693 GAGTA---ATGCTGT-CCAGGACAT-------------TTGGGAGAAAAG------
i apaSpi1.KB929104             I 4 C 0
s xenTro7.KB021650              39350108 33 - 150913983 -GGAC---TAGAGATGCTACAGCCT-------------CTTAGAGGTGGA------
i xenTro7.KB021650             C 0 I 3
s fr3.chr10                      9063859 36 +   9126174 GACCC---TCCCCTG-CCTCAGCATC----------CCAACATCTCCGCT------
i fr3.chr10                    C 0 C 0
s takFla1.KE121866                209078 36 +    220559 GACCC---TCCCCTG-CCTCAGCATC----------CCAACATCTCCGCT------
i takFla1.KE121866             C 0 C 0
s oreNil2.chrLG8-24              3786413 28 -  29447820 ---CC---TCTCAAG-CTACAGCTT---------------CACCCAAGCA------
i oreNil2.chrLG8-24            C 0 C 0
s oryLat2.ultracontig146            3889 36 -    113228 GGACCAGTACTCTGA-TTACAGTCT-------------GACAGAGGAGCA------
i oryLat2.ultracontig146       C 0 C 0
s danRer10.chr6                 58382660 18 +  60272633 ---GC---CAATTAA-AGAAAGGTT-------------------------------
i danRer10.chr6                I 1 C 0
s astMex1.KB882255                 17764 18 -   1586233 ---CT---TGTGTAG-ATGTAACTT-------------------------------
i astMex1.KB882255             I 1 C 0
s petMar2.GL478800                 10293 35 +    213094 ------------------ACAGTGTCTCTACTGAGTCACCCAGAGGGGAC---AGT
i petMar2.GL478800             C 0 C 0
e gasAcu1.chrXI                   298924 565 -  16706052 T
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e ficAlb2.chr4A                 19371223  1 +  21182716 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221275               1872895  0 +   2017280 C
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375822               2439586 31 +   2691611 I
e allMis1.JH739658                 38113 134 -    691381 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL124958                 26121  0 -     59456 I
e geoFor1.JH740659                  8408 43 -     25510 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e melUnd1.JH556573                751858  2 +  10614383 I
e taeGut2.chrUn_EQ837326            1653  2 -      4984 I
e rheMac3.chr8                  61690256 4519 + 150158102 T
e macFas5.chr8                  88463067  0 - 146850525 C
e chlSab2.chr8                  53284695 4759 + 139301422 T

a score=-43515.000000
s hg38.chr8_KI270814v1_alt        113870 9 +    141812 CATCATCTC---
s panTro4.chr8                  55016338 9 + 143986469 CATCATCTC---
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59083346 9 + 153482349 CATCATCTC---
i ponAbe2.chr8                 C 0 C 0
s macFas5.chr8                  88463067 9 - 146850525 CACCATGTC---
i macFas5.chr8                 C 0 C 0
s ornAna1.Contig1391              114712 9 -    174025 CGTCGCTCG---
i ornAna1.Contig1391           C 0 C 0
s ficAlb2.chr4A                 19371224 7 +  21182716 --GAGTCTG---
i ficAlb2.chr4A                I 1 I 37
s pseHum1.KB221275               1872895 8 +   2017280 -GGGGTTTG---
i pseHum1.KB221275             C 0 I 43
s galGal4.chrUn_AADN03023623        1368 9 -      5081 TCTGGCCTT---
i galGal4.chrUn_AADN03023623   C 0 I 42
s pelSin1.JH211051                 22795 6 +    476004 CAGAGC------
i pelSin1.JH211051             C 0 I 3
s apaSpi1.KB929104                 22155 7 +    818693 CAAAGct-----
i apaSpi1.KB929104             C 0 I 4
s xenTro7.KB021650              39350144 8 - 150913983 -GAGATGCT---
i xenTro7.KB021650             I 3 I 1
s fr3.chr10                      9063895 5 +   9126174 ----GTTCC---
i fr3.chr10                    C 0 I 4
s takFla1.KE121866                209114 5 +    220559 ----GTTCC---
i takFla1.KE121866             C 0 I 4
s oreNil2.chrLG8-24              3786441 5 -  29447820 ----GGTCC---
i oreNil2.chrLG8-24            C 0 I 9
s oryLat2.ultracontig146            3925 5 -    113228 ----GTACT---
i oryLat2.ultracontig146       C 0 I 7
s danRer10.chr6                 58382678 5 +  60272633 ----GGGCT---
i danRer10.chr6                C 0 I 10
s astMex1.KB882255                 17782 5 -   1586233 ----GTCCT---
i astMex1.KB882255             C 0 I 10
s petMar2.GL478800                 10328 9 +    213094 ---GACCCTACT
i petMar2.GL478800             C 0 C 0
e gasAcu1.chrXI                   298924 565 -  16706052 T
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375822               2439586 31 +   2691611 I
e allMis1.JH739658                 38113 134 -    691381 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL124958                 26121 0 -     59456 I
e geoFor1.JH740659                  8408 43 -     25510 I
e sarHar1.chr3_GL849771_random    179350 0 -    558665 C
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736 1 +    779542 I
e melUnd1.JH556573                751858 2 +  10614383 I
e taeGut2.chrUn_EQ837326            1653 2 -      4984 I
e rheMac3.chr8                  61690256 4519 + 150158102 T
e chlSab2.chr8                  53284695 4759 + 139301422 T

a score=-458633.000000
s hg38.chr8_KI270814v1_alt        113879 52 +    141812 CAGCCT-----------------------------------TCT------CTCAGA--AGGGAAACTGGCTGTCTCCAG---CCTCTC---AGAGGAGA--------AA
s panTro4.chr8                  55016347 52 + 143986469 CAGCCT-----------------------------------TCT------CTCAGA--AGGGAAACTGGCTGTCTCCAG---CCTCTC---AGAGGAGA--------AA
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59083355 78 + 153482349 CAGCCTC------TCAGAGGAGGACATACCATCTC---CAGCCT------CTCAGA--AGAGAAACTGGCTGTCTCCAG---CCTCTC---AGAGGAGA--------AA
i ponAbe2.chr8                 C 0 C 0
s macFas5.chr8                  88463076 87 - 146850525 CAGTTTCTTTCTTTCTGCAAACATTAAACCTTCTCAGATGTTGT------CTCTGA--GGAGAAACTCACTGTTTCCAA---TTTTTC---AAAGGAGG--------AC
i macFas5.chr8                 C 0 C 0
s sarHar1.chr3_GL849771_random    179350 45 -    558665 ------------------------------------------CA------TACAAA--GGAGAGGAGTGCTGTCTCTAA---TAATTA---ATAGGGAA--------GG
i sarHar1.chr3_GL849771_random C 0 C 0
s ornAna1.Contig1391              114721 49 -    174025 CAGCCT-----------------------------------CCG------CTCTGC--AGAG---CTCATCGTCCGCAG---CCTCCA---CTTTGAGG--------AG
i ornAna1.Contig1391           C 0 C 0
s ficAlb2.chr4A                 19371268 48 +  21182716 -------------------------------------C--AAAT------CTCACA--TGTCTGAATCTCACATGTCTG---AATCTC---ACAGGTCA--------GA
i ficAlb2.chr4A                I 37 I 2
s geoFor1.JH740659                  8451 43 -     25510 ----------------------------------------cagt------ttCTGA--Ggacccttttc----cttccc---aatttC---TGAGAAGG--------AC
i geoFor1.JH740659             I 43 n 43
s taeGut2.chr10                 17656811 50 -  20806668 -------------------------------------CCGCTTT------CCCTCA--GGGCTGTTCCCGCCTTCTTCC---AGCCCC---TCAGGGCG--------GT
i taeGut2.chr10                n 2 I 2
s pseHum1.KB221275               1872946 44 +   2017280 -----------------------------------------CAT------CCCTTG--GGATGGATTGATGGTCATCC-----ATCAC---TCAAGATG--------GA
i pseHum1.KB221275             I 43 I 9
s galGal4.chrUn_AADN03023623        1419 48 -      5081 -------------------------------------CAGCCAT------TACTTG--AGGACATTTCCCACCTCTCC-----CCCAC---AGCGTGCA--------GA
i galGal4.chrUn_AADN03023623   I 42 I 3
s pelSin1.JH211051                 22804 49 +    476004 ----------------------------------------CGGC------CCAGGAGCGGAGGGAGTCAGAGCCCCCGG---CCCAGC---GGCGGAGG--------GA
i pelSin1.JH211051             I 3 I 7
s apaSpi1.KB929104                 22166 47 +    818693 ----------------------------------------cagc------ccagga--ggagaaCAATGTTGCCCCAGG---CATTCA---GGAGGAAA--------AT
i apaSpi1.KB929104             I 4 I 5
s xenTro7.KB021650              39350153 49 - 150913983 --------------------------------------CAGCCT------CTTAGA--GGTGGACTAGAGATGCTACAG---CCTCTT---AGAGGTGG--------AT
i xenTro7.KB021650             I 1 C 0
s fr3.chr10                      9063904 49 +   9126174 --------------------------------------CAGCAT---CTGAACAGG--G--ACCCTTCCCTGCCTCAGC---ATCCCA---ACATCTCC--------G-
i fr3.chr10                    I 4 C 0
s takFla1.KE121866                209123 49 +    220559 --------------------------------------CAGCAT---CTGAACAGG--G--ACCCTTCCCTGCCTCAGC---ATCCCA---ACATCTCC--------G-
i takFla1.KE121866             I 4 C 0
s oreNil2.chrLG8-24              3786455 60 -  29447820 --------------------------------------CAGCTTCCCCCAAACAGA-------CCTCCCCAGCTCCATCTTTACCCAA---GCAGAGCCTTCAAGCTA-
i oreNil2.chrLG8-24            I 9 C 0
s oryLat2.ultracontig146            3937 46 -    113228 --------------------------------------CAGACT------GACAGA--GGAGCAGTACTCTGATT--AC---AGTCTG---ACAGAGGA--------G-
i oryLat2.ultracontig146       I 7 C 0
s danRer10.chr6                 58382693 50 +  60272633 --------------------------------------AATCAA------AATAGC--AAGATACAACCTTGACAC-CC---AATCAGCGCACAGATGA--------G-
i danRer10.chr6                I 10 C 0
s astMex1.KB882255                 17797 43 -   1586233 --------------------------------------AAGTGG------A--AGT--GAGTTGTCCTCCTGAGCC-TC---ATTCAA-----AGGTAA--------A-
i astMex1.KB882255             I 10 C 0
s petMar2.GL478800                 10337 49 +    213094 --------------------------------------GAGTCA------CCAAGA--GGGGACAGTgactctactgag---acaccc---agagggga--------cA
i petMar2.GL478800             C 0 C 0
e gasAcu1.chrXI                   298924 565 -  16706052 T
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375822               2439586 31 +   2691611 I
e allMis1.JH739658                 38113 134 -    691381 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL124958                 26121  0 -     59456 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e melUnd1.JH556573                751858  2 +  10614383 I
e rheMac3.chr8                  61690256 4519 + 150158102 T
e chlSab2.chr8                  53284695 4759 + 139301422 T

a score=-899386.000000
s hg38.chr8_KI270814v1_alt        113931  89 +    141812 C-T----------------------------------------------TTTT---------GTCTCTAGCC-TCTCAGAGTA-----------------------GGACCTCAC-------------CATCTCCA--GCTT--------------CTCAG-AAAATAAATTAAT--CAT-----------------------CTTCAGCCTC--------TCAGAGG-TG--AA--
s panTro4.chr8                  55016399  89 + 143986469 C-T----------------------------------------------TTTT---------GTCTCTAGCC-TCTCGGAGTA-----------------------GGACCTCAC-------------CATCTCCA--GCTT--------------CTCAG-AAAATAAATTAAT--CAT-----------------------CTTCAGCCTC--------TCAGAGG-TG--AA--
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59083433  90 + 153482349 CTT----------------------------------------------TTTT---------GTCTCTAGCC-TCTCGGAGTA-----------------------GGACCTCAC-------------CATCTCCA--GCTT--------------CTCAG-AAAAGAAATTAAT--CAT-----------------------CTTCAGCCTC--------TCAGAGG-TG--AA--
i ponAbe2.chr8                 C 0 C 0
s macFas5.chr8                  88463163 136 - 146850525 T-TCACCAGATTCTCACAAGTAtgttttctggttttttgttttgttttgtttt---------gttttcttCA-TCTGTGAATA-----------------------TGACTTCAT-------------TGTCTTTT--GCTT--------------TTTGG-AGGGGAAACTTCT--TTT-----------------------CTTCAGGCTT--------TTAAAGGATA--AT--
i macFas5.chr8                 C 0 C 0
s sarHar1.chr3_GL849771_random    179395  55 -    558665 A-A----------------------------------------------CTCT---------GTCTCCAATA-TTTAGTAGGG-----------------------GAGGAGCAC-------------TGTCTCCA--AT----------------------------AATTAAT--------------------------------------------------AGG---------
i sarHar1.chr3_GL849771_random C 0 C 0
s ornAna1.Contig1391              114770  62 -    174025 C-T----------------------------------------------CGTC---------GCTCGCAGCC-TCCGCTCTGT-----------------------GGAGCTCAT-------------CGTCGGCA--GCCT--------------C-----------------------------------------------------CAC--------TCTGAGG-TG--CT--
i ornAna1.Contig1391           C 0 C 0
s ficAlb2.chr4A                 19371318  87 +  21182716 -CT----------------------------------------------CACA---------GATCTGAATC-TCACAGATCA------------------------------CA-------------GTCTCACA--GGTC--------TGAAT-CTCAC-AGATCTGAATTTC--ACACA---------------------TTTGAATCTC--------ACAGATC-TG------
i ficAlb2.chr4A                I 2 I 2
s geoFor1.JH740049                182503 100 -   1550430 -ct----------------------------------------------ccca---------gcccagctcc----cagggagga---------------------gctgcagcc-------------atcCCAAA--GCTCTACTCCGGTAAATGCCCAA-AGAatggctcagc--cctgc---------------------tgct--tccc--------tgagaAA-AA------
i geoFor1.JH740049             n 43 I 5
s taeGut2.chr10                 17656863  87 -  20806668 -CC----------------------------------------------CTCA---------GGGCGGTTCC-CCTCAGGGCG-----------------------GTTCCCGCC-------------TCCTTCCA--GCCC--------------CTCAA-GG--CGGTTCCCG--CCTCC---------------------TTCCAGCCCC--------TCAAGGC-GG------
i taeGut2.chr10                I 2 I 2
s pseHum1.KB221275               1872999  89 +   2017280 -GT----------------------------------------------CACA---------TC----CACC-ACTCAGGATAGA---------------------TTTATGGCG-------------TTCATCTC--CATC--------------CCTTG-GGAGGGGTTTGTGGTCATCA---------------------TCTCCATCCC--------TTGGGAG-GG------
i pseHum1.KB221275             I 9 I 3
s galGal4.chrUn_AADN03023623        1470 141 -      5081 -TT----------------------------------------------CCCA---------TTCCTCCCCC-ATTACTGATGGAATCCTCCATCACTTTTGGACGTTTCCCACC-------------TCTCACCC--ATTA--------------CCAAC-GGGGAGTTTTCCA--TCCCCAACCCATTACCAATGAGGAGTTTTCCATCCCCAACCCATTAATGAC-GG------
i galGal4.chrUn_AADN03023623   I 3 I 1
s pelSin1.JH211051                 22860  82 +    476004 -CC----------------------------------------------CCCG---------GCCCAGGAGC-------GGAG-----------------------GGAGTCAGA-------------GCCC-CCG--GCCC--------------AGCGGCGGAGGGAGTCAGA--GC------------------------CCCCGGCCCA--------GGAGCGG-AGGG----
i pelSin1.JH211051             I 7 C 0
s apaSpi1.KB929104                 22218  82 +    818693 -CC----------------------------------------------TCCAGGCT-----GTCCAGAAGC----------------------------------TAAACCAAA-------------CCCTACAA--GCTC--------------TGCTA-AAAGAGAACCAGG--CC------------------------CTTCTGGAAG--------AGAAAAA-GGCA----
i apaSpi1.KB929104             I 5 C 0
s xenTro7.KB021650              39350202  87 - 150913983 --------------------------------------------------------TAGAGATGCTACAGCC-TCTTAGAGGT-----------------------GGACTAGAG-------------ATACTACC--GCTT--------------CTTAG-AGGTGGACTAGAG--ATG-----------------------CTACAGCCTC--------TTAGAGG-TT------
i xenTro7.KB021650             C 0 I 2
s fr3.chr10                      9063953  89 +   9126174 -CT----------------------------------------------GTTC---------CCCTCCAGCA-TCTGAACAGG-----------------------GACCCTTCC----------CTGCCTCAGCA--TCCC--------------AACAT-CTCCACTGTTCCC--CTC-----------------------CAGCATCTGA--------ACAGGGA-C-------
i fr3.chr10                    C 0 C 0
s takFla1.KE121866                209172  89 +    220559 -CT----------------------------------------------GTTC---------CCCTCCAGCA-TCTGAACAGG-----------------------GACCCTTCC----------CTGCCTCAGCA--TCCC--------------AACAT-CTCCACTGTTCCC--CTC-----------------------CAGCATCTGA--------ACAGGGA-C-------
i takFla1.KE121866             C 0 C 0
s oreNil2.chrLG8-24              3786515  78 -  29447820 -CA----------------------------------------------GCTT---------CCCCCAAGCA----------------------------------GACCTCTCCAGCTACAGCTTTGCCTAAACAGGCCCC--------------TGTAG-CTCCACCTTCCCC--C---------------------------------AA--------GCAGA-----------
i oreNil2.chrLG8-24            C 0 C 0
s oryLat2.ultracontig146            3983  89 -    113228 -CA----------------------------------------------GTAC---------TCTGATTACAGTCTGACAGAG-----------------------GACCAGTAC---------TCTGATT--ACA--GTCT--------------GATAG-AGGACCAGTACTC--TGT-----------------------TTACAGTCTG--------ATAGAGG-A-------
i oryLat2.ultracontig146       C 0 C 0
s danRer10.chr6                 58382743  82 +  60272633 -CT----------------------------------------------TTCA---------GTAGCCA--A-TTAGAAAGCA-T---------------------GATACAACA---------------TTAACA--GCC---------------AATCA-GAAAACAGTTGGG--CTG-----------------------TAATAAACAA--------ATCAAAA-A-------
i danRer10.chr6                C 0 I 12
s astMex1.KB882255                 17840  60 -   1586233 -CT----------------------------------------------GTCC---------GT-------C-TCAGAAGATGTT---------------------GATCTCTCA---------------TCCTGA--GCCT--------------CATTT-GAAGGTAACTTGT--CT----------------------------------------------------------
i astMex1.KB882255             C 0 C 0
s petMar2.GL478800                 10386  89 +    213094 -GT----------------------------------------------GACT---------CTACTGAGTC-ACCAAGAGGG-----------------------GACAGTGAC-------------CCTACCGA--GTCA--------------CCCAG-AGGGTACAGTGTC--TCT-----------------------ACTGAGTCAC--------CCAGAGG-GG----AC
i petMar2.GL478800             C 0 C 0
e gasAcu1.chrXI                   298924 565 -  16706052 T
e tetNig2.chr10                  6379385   0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382   0 -   6649201 I
e hapBur1.JH425491                252157   0 -   1273513 I
e neoBri1.JH422308               3491820   0 -   5414369 I
e araMac1.AOUJ01470298               637   0 -       895 I
e anoCar2.chr1                 148577473   4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375822               2439586  31 +   2691611 I
e allMis1.JH739658                 38113 134 -    691381 I
e falPer1.KB390952               2753956   0 -  18327016 I
e falChe1.KB397350               1707310   0 -   3649919 I
e macEug2.GL124958                 26121   0 -     59456 I
e melGal1.chr7                  34310641   0 -  38723565 I
e anaPla1.KB742696               1254472   0 -   1270250 I
e amaVit1.AOCU01222764              1324   0 -      1397 I
e cheMyd1.KB605988                134509   0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736   1 +    779542 I
e melUnd1.JH556573                751858   2 +  10614383 I
e rheMac3.chr8                  61690256 4519 + 150158102 T
e chlSab2.chr8                  53284695 4759 + 139301422 T

a score=-93706.000000
s hg38.chr8_KI270814v1_alt        114020 18 +    141812 ACTCACAA--TCT-ACAG-------CCT------------------------------
s panTro4.chr8                  55016488 18 + 143986469 ACTCACCA--TCT-ACAG-------CCT------------------------------
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59083523 18 + 153482349 ACTCACCA--TCT-ACAG-------CCT------------------------------
i ponAbe2.chr8                 C 0 C 0
s macFas5.chr8                  88463299 18 - 146850525 TTTTTTTT--TCT-TTCA-------CAT------------------------------
i macFas5.chr8                 C 0 C 0
s ornAna1.Contig1391              114832 19 -    174025 CCCTGCCA--CCCAACCA-------GCC------------------------------
i ornAna1.Contig1391           C 0 C 0
s ficAlb2.chr4A                 19371407 18 +  21182716 -------T--CTC-ACAGGTCAGAACGT------------------------------
i ficAlb2.chr4A                I 2 C 0
s geoFor1.JH740049                182608 18 -   1550430 ACCACCCA--TCC-CCAG-------CAT------------------------------
i geoFor1.JH740049             I 5 C 0
s taeGut2.chr10                 17656952 18 -  20806668 CTCGCCTT--CTT-CCAG-------CCC------------------------------
i taeGut2.chr10                I 2 C 0
s pseHum1.KB221275               1873091 18 +   2017280 TGTGCTCA--TCT-CCAC-------CCC------------------------------
i pseHum1.KB221275             I 3 C 0
s galGal4.chrUn_AADN03023623        1612 18 -      5081 GTTTTCCA--TCC-CCAG-------CCC------------------------------
i galGal4.chrUn_AADN03023623   I 1 C 0
s pelSin1.JH211051                 22942 18 +    476004 AGTCAGAG--CCC-CCGG-------CCC------------------------------
i pelSin1.JH211051             C 0 C 0
s apaSpi1.KB929104                 22300 15 +    818693 ATCCAGAT--TCT-TCAG----------------------------------------
i apaSpi1.KB929104             C 0 C 0
s xenTro7.KB021650              39350291 18 - 150913983 CTAGAGAT--GCT-ACAG-------GCT------------------------------
i xenTro7.KB021650             I 2 C 0
s fr3.chr10                      9064042 12 +   9126174 ------CC--TCC-CCTG-------CCT------------------------------
i fr3.chr10                    C 0 I 6
s takFla1.KE121866                209261 12 +    220559 ------CC--TCC-CCTG-------CCT------------------------------
i takFla1.KE121866             C 0 I 6
s oreNil2.chrLG8-24              3786593 12 -  29447820 ------CC--TCC-CCAG-------CTC------------------------------
i oreNil2.chrLG8-24            C 0 I 8
s oryLat2.ultracontig146            4072 14 -    113228 ------CCAGTAC-TCTG-------TTT------------------------------
i oryLat2.ultracontig146       C 0 I 7
s danRer10.chr6                 58382837 10 +  60272633 ------CC--TTG-ACAG-------C--------------------------------
i danRer10.chr6                I 12 I 12
s astMex1.KB882255                 17900 10 -   1586233 ------TC--CTG-AGTC-------T--------------------------------
i astMex1.KB882255             C 0 I 5
s petMar2.GL478800                 10475 48 +    213094 AGTGACCC--TAC-TGAG-------TCACCAAGAGGGGACAGTgactctactgagaca
i petMar2.GL478800             C 0 C 0
e gasAcu1.chrXI                   298924 565 -  16706052 T
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375822               2439586 31 +   2691611 I
e allMis1.JH739658                 38113 134 -    691381 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL124958                 26121  0 -     59456 I
e sarHar1.chr3_GL849771_random    179450  0 -    558665 C
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e melUnd1.JH556573                751858  2 +  10614383 I
e rheMac3.chr8                  61690256 4519 + 150158102 T
e chlSab2.chr8                  53284695 4759 + 139301422 T

a score=-39166.000000
s hg38.chr8_KI270814v1_alt        114038 13 +    141812 CTCA---GAAGAGTAC
s panTro4.chr8                  55016506 13 + 143986469 CTCA---GAAGAGTAC
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59083541 13 + 153482349 CTCA---GAAGAGTAC
i ponAbe2.chr8                 C 0 C 0
s macFas5.chr8                  88463317 11 - 146850525 CTCA---GGAGAGT--
i macFas5.chr8                 C 0 C 0
s sarHar1.chr3_GL849771_random    179450  7 -    558665 -------GAGGAGA--
i sarHar1.chr3_GL849771_random C 0 C 0
s ornAna1.Contig1391              114851  9 -    174025 CTCA---GGTGA----
i ornAna1.Contig1391           C 0 C 0
s ficAlb2.chr4A                 19371425 13 +  21182716 CACA---GATCTGAAT
i ficAlb2.chr4A                C 0 I 19
s geoFor1.JH740049                182626 13 -   1550430 CTCA---GGGAAAATC
i geoFor1.JH740049             C 0 I 9
s taeGut2.chr10                 17656970 13 -  20806668 CTCA---GGGCGGTTC
i taeGut2.chr10                C 0 I 18
s pseHum1.KB221275               1873109 13 +   2017280 TTGG---GAGGGGTTT
i pseHum1.KB221275             C 0 I 6
s galGal4.chrUn_AADN03023623        1630 16 -      5081 ATTAATGGAGGAGTTT
i galGal4.chrUn_AADN03023623   C 0 I 11
s pelSin1.JH211051                 22960 13 +    476004 AGCGGC-GGAGGGA--
i pelSin1.JH211051             C 0 C 0
s apaSpi1.KB929104                 22315  9 +    818693 -------GAAGAGAAC
i apaSpi1.KB929104             C 0 n 0
s xenTro7.KB021650              39350309 13 - 150913983 CTTA---GAGGTGGAC
i xenTro7.KB021650             C 0 C 0
s fr3.chr10                      9064060  8 +   9126174 CCCA--------ACAT
i fr3.chr10                    I 6 I 5
s takFla1.KE121866                209279  8 +    220559 CCCA--------ACAT
i takFla1.KE121866             I 6 I 5
s oreNil2.chrLG8-24              3786613 11 -  29447820 CCCA-----AGCAGAC
i oreNil2.chrLG8-24            I 8 I 5
s oryLat2.ultracontig146            4093 13 -    113228 GATA---GAGGAGCAG
i oryLat2.ultracontig146       I 7 I 5
s gasAcu1.chrXI                   298359 13 -  16706052 CTCA---GGAGAACAT
i gasAcu1.chrXI                T 565 I 19
s petMar2.GL478800                 10523 13 +    213094 ccca---gaggggacA
i petMar2.GL478800             C 0 C 0
e danRer10.chr6                 58382847 12 +  60272633 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e astMex1.KB882255                 17910  5 -   1586233 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375822               2439586 31 +   2691611 I
e allMis1.JH739658                 38113 134 -    691381 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL124958                 26121  0 -     59456 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e melUnd1.JH556573                751858  2 +  10614383 I
e rheMac3.chr8                  61690256 4519 + 150158102 T
e chlSab2.chr8                  53284695 4759 + 139301422 T

a score=-279610.000000
s hg38.chr8_KI270814v1_alt        114051 45 +    141812 CTTGCAGTCTGCAG--------------TCTCTCA---AAG-----GAGAAAATTGCCAT--CTCCAGC
s panTro4.chr8                  55016519 45 + 143986469 CTTGCAGTCTGCAG--------------TCTCTCA---AAG-----GAGAAAATTGCCAT--CTCCAGC
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59083554 45 + 153482349 CTTGCTGTCTGCAG--------------TCTCTCA---AAG-----GAGAAAATTGCCAT--CTCCAGC
i ponAbe2.chr8                 C 0 C 0
s macFas5.chr8                  88463328 45 - 146850525 CTCACTGCCTCCAG--------------CCTCTCA---GAG-----GAAGACCTCACTTT--CTCCTGC
i macFas5.chr8                 C 0 C 0
s sarHar1.chr3_GL849771_random    179457 38 -    558665 ---GCCATCTCTAA------------------TAA---TAA-----GGGAGGAGTACTGT--CTCCAAT
i sarHar1.chr3_GL849771_random C 0 C 0
s ornAna1.Contig1391              114860 48 -    174025 CCTGCAGTTTGCAGGCGGGATTAACAGCTCTCTTA-------------------TCCTAC--TTCCTTT
i ornAna1.Contig1391           C 0 C 0
s ficAlb2.chr4A                 19371457 39 +  21182716 ---CTCATTT---G--------------AATCTCA---CAG--ATCCAAATCTCGCAGGT-----CAGA
i ficAlb2.chr4A                I 19 C 0
s geoFor1.JH740049                182648 47 -   1550430 ---TCCATTCCCAG--------------CATCCCA---GAGAAAAACCACTGCCACCCAT--CCCCACC
i geoFor1.JH740049             I 9 C 0
s taeGut2.chr10                 17657001 42 -  20806668 ---CCTCCTTCCAG--------------CCCCTCA---GGG-----CGGTTCCCGCTTCC--CTCCAGC
i taeGut2.chr10                I 18 C 0
s pseHum1.KB221275               1873128 42 +   2017280 ---ATCATCTCCAC--------------CCCTTGG---GAG-----GGGTTTGTGGTCAT--CTCCACC
i pseHum1.KB221275             I 6 C 0
s galGal4.chrUn_AADN03023623        1657 33 -      5081 ---TCCATTACCAA--------------T---------GGG-----AAGTTTTC---CAT--CCCCAAC
i galGal4.chrUn_AADN03023623   I 11 C 0
s pelSin1.JH211051                 22973 15 +    476004 -------------------------------GTCA---GAG------------------C--CCCCGGC
i pelSin1.JH211051             C 0 C 0
s xenTro7.KB021650              39350322 15 - 150913983 ---------------------------------TA---GAG-----ATG-------------CTACAGC
i xenTro7.KB021650             C 0 C 0
s fr3.chr10                      9064073 39 +   9126174 CTGTTCCCCTCCAG--------------CATCTGA---ACA-----GGG------ACCCT--TCCCTGC
i fr3.chr10                    I 5 I 16
s takFla1.KE121866                209292 39 +    220559 CTGTTCCCCTCCAG--------------CATCTGA---ACA-----GGG------ACCCT--TCCCTGC
i takFla1.KE121866             I 5 I 16
s oreNil2.chrLG8-24              3786629 34 -  29447820 CAGCTCCACCTTCG--------------C--CCAA---GCA-----GA---------CCT--CCCCAGC
i oreNil2.chrLG8-24            I 5 N 0
s oryLat2.ultracontig146            4111 40 -    113228 TGATTACAGACTGA--------------CAGAGGA---GCA-----GT-------ACTCTGATTACAGT
i oryLat2.ultracontig146       I 5 I 17
s gasAcu1.chrXI                   298391 28 -  16706052 CGGGGCAACATGAA--------------CGTCTGG---A----------------GTCCT--C------
i gasAcu1.chrXI                I 19 C 0
s danRer10.chr6                 58382859 39 +  60272633 TGATGACCTTTCAG--------------TAGCCAA---TCA-----GAA------AGTAA--TATATAG
i danRer10.chr6                I 12 I 10
s astMex1.KB882255                 17915 42 -   1586233 GGATGTACTTTGTC--------------CTGCTCAGTCTCA-----AAA------GGACT--TAACTTC
i astMex1.KB882255             I 5 I 10
s petMar2.GL478800                 10536 45 +    213094 GTGACTCTACTGAG--------------TCACCAA---GAG-----GGGACAGTGACCCT--ACCGAGT
i petMar2.GL478800             C 0 C 0
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375822               2439586 31 +   2691611 I
e allMis1.JH739658                 38113 134 -    691381 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL124958                 26121  0 -     59456 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929104                 22324  0 +    818693 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e melUnd1.JH556573                751858  2 +  10614383 I
e rheMac3.chr8                  61690256 4519 + 150158102 T
e chlSab2.chr8                  53284695 4759 + 139301422 T

a score=-96086.000000
s hg38.chr8_KI270814v1_alt        114096 25 +    141812 CTCTCGAAG-------AAGA----AACTGTCTGCAG----
s panTro4.chr8                  55016564 25 + 143986469 CTCTCAAAG-------AAGA----AACTGTCTGCAG----
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59083599 25 + 153482349 CTCTCAAAG-------AAGA----AACTGTCTCCAG----
i ponAbe2.chr8                 C 0 C 0
s macFas5.chr8                  88463373 20 - 146850525 CTCTCAGAT-------GAGA----AACTTGC---------
i macFas5.chr8                 C 0 C 0
s sarHar1.chr3_GL849771_random    179495 29 -    558665 ATTTAGTAG-------GGGAGGAGAACTGTCTCCAA----
i sarHar1.chr3_GL849771_random C 0 C 0
s ornAna1.Contig1391              114908 25 -    174025 TTGTCACAG-------AGCC----CACTGTCAGCAG----
i ornAna1.Contig1391           C 0 T 239
s ficAlb2.chr4A                 19371496 17 +  21182716 ATCTCATAG-------------------GTCTGAat----
i ficAlb2.chr4A                C 0 C 0
s geoFor1.JH740049                182695 27 -   1550430 ATCCCAGAGAAA-----AGC----CTTCCCCAGCAT----
i geoFor1.JH740049             C 0 C 0
s taeGut2.chr10                 17657043 21 -  20806668 CCCTCAGGG---------------CGGCTCCCGCCT----
i taeGut2.chr10                C 0 C 0
s pseHum1.KB221275               1873170 32 +   2017280 CCTTGGGAGGGGTTTGTGGT----GAAGATCTCCAT----
i pseHum1.KB221275             C 0 C 0
s galGal4.chrUn_AADN03023623        1690 29 -      5081 CCATTAATG---ATGGGGTT----TTCCATCCCCAA----
i galGal4.chrUn_AADN03023623   C 0 C 0
s pelSin1.JH211051                 22988 29 +    476004 CCAGGAGCG---GAGGGAGT----CAGAGCCCCCGG----
i pelSin1.JH211051             C 0 C 0
s xenTro7.KB021650              39350337 29 - 150913983 CTCTTAGAG---GTGGACTA----GAGATGCTACAG----
i xenTro7.KB021650             C 0 C 0
s danRer10.chr6                 58382908  8 +  60272633 ----------------------------CAATCAAA----
i danRer10.chr6                I 10 I 14
s astMex1.KB882255                 17967  8 -   1586233 ----------------------------TCTTGCAA----
i astMex1.KB882255             I 10 I 14
s petMar2.GL478800                 10581 29 +    213094 CACCCAGAG-------GGTA----CAGTGTCTCTACTGAG
i petMar2.GL478800             C 0 C 0
e gasAcu1.chrXI                   298419  0 -  16706052 C
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e oryLat2.ultracontig146            4151 17 -    113228 I
e takFla1.KE121866                209331 16 +    220559 I
e fr3.chr10                      9064112 16 +   9126174 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375822               2439586 31 +   2691611 I
e allMis1.JH739658                 38113 134 -    691381 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL124958                 26121  0 -     59456 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929104                 22324  0 +    818693 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e melUnd1.JH556573                751858  2 +  10614383 I
e rheMac3.chr8                  61690256 4519 + 150158102 T
e chlSab2.chr8                  53284695 4759 + 139301422 T

a score=-223342.000000
s hg38.chr8_KI270814v1_alt        114121 50 +    141812 CCTCTCAGATGA-GGA-----AATCTTCATCTCCAGTCACTCA-----GGAAATAAACTTA
s panTro4.chr8                  55016589 50 + 143986469 CCTCTCAGATGA-GGA-----AATCTTCATCTCCAGTCACTCA-----GGAAAGAAACTTA
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59083624 50 + 153482349 CCTCTCAGATGA-GGA-----AATCTCCATCTCCAGTCACTCA-----GGAAAGAAACTTA
i ponAbe2.chr8                 C 0 C 0
s macFas5.chr8                  88463393 29 - 146850525 ---------------------------CATCTCCAGTTTCTTG-----TAAGAGGAACTCA
i macFas5.chr8                 C 0 C 0
s sarHar1.chr3_GL849771_random    179524 40 -    558665 ----TAATAGGG-GGG-----AAGCTCTGTCTCCAATAA--TA-----GGAAAGAGA----
i sarHar1.chr3_GL849771_random C 0 C 0
s ornAna1.Contig1391              114694 50 -    174025 CCTCCACTTTGA-GGA-----GCTCGTCGCTCGCAGCCTCCGC-----TCTGCAGAGCTCA
i ornAna1.Contig1391           T 239 C 0
s ficAlb2.chr4A                 19371513 34 +  21182716 ---ctcacagatcaga-ctctcaca-----gatcagactctca------------------
i ficAlb2.chr4A                C 0 C 0
s geoFor1.JH740049                182722 40 -   1550430 ---CCCAGAGAG-AAA-CAGTGGCAGCCATCCCCAGCATCCCA-----GA-----------
i geoFor1.JH740049             C 0 T 149
s taeGut2.chr10                 17657064 16 -  20806668 ---CC-------------------------TTCCAGCCCCTCA-----G------------
i taeGut2.chr10                C 0 I 12
s pseHum1.KB221275               1873202 50 +   2017280 ---CCCTTGGGATGGATTTATGGTCCTCATCTCCATCACTCAA-----GA---TGGATTTA
i pseHum1.KB221275             C 0 I 39
s galGal4.chrUn_AADN03023623        1719 52 -      5081 ---CCCATTAAT--GA-TGGAGTTTTCCATCCCCAACCCATTACCAATGA---GGAGTTTT
i galGal4.chrUn_AADN03023623   C 0 C 0
s pelSin1.JH211051                 23017 20 +    476004 ---CCCAGCGGC-GGA-GGGAGTCA------------------------------------
i pelSin1.JH211051             C 0 C 0
s xenTro7.KB021650              39350366 24 - 150913983 CCTCTTAGAGGT-GGACTAGAGATG------------------------------------
i xenTro7.KB021650             C 0 C 0
s gasAcu1.chrXI                   298419 25 -  16706052 -------------------------------CTCGGGAAAACG-----TGAACGTCTGGAG
i gasAcu1.chrXI                C 0 I 52
s danRer10.chr6                 58382930 26 +  60272633 -----------------------------TTATTAATCAATCA------GAAAGTAAGATA
i danRer10.chr6                I 14 I 31
s astMex1.KB882255                 17989 28 -   1586233 ----------------------------CTTCTGAGCCTCACA-----TGAACGTAACTTG
i astMex1.KB882255             I 14 I 31
s petMar2.GL478800                 10610 50 +    213094 TCACCCAGAGGG-GAC-----AGTGACCCTACTGAGTCACCCA-----GAGGGGACAGTGA
i petMar2.GL478800             C 0 C 0
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e oryLat2.ultracontig146            4151 17 -    113228 I
e takFla1.KE121866                209331 16 +    220559 I
e fr3.chr10                      9064112 16 +   9126174 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375822               2439586 31 +   2691611 I
e allMis1.JH739658                 38113 134 -    691381 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL124958                 26121  0 -     59456 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929104                 22324  0 +    818693 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e melUnd1.JH556573                751858  2 +  10614383 I
e rheMac3.chr8                  61690256 4519 + 150158102 T
e chlSab2.chr8                  53284695 4759 + 139301422 T

a score=-465026.000000
s hg38.chr8_KI270814v1_alt        114171  74 +    141812 CCATCTCCAGCCTCTGAA---------AGA---------------AGAAACTTGCTGCCTCCA-----GCCTCTCAAAGGAGGAACTCAC--C----------------AT--CTC--CAGTC--T--C
s panTro4.chr8                  55016639  74 + 143986469 CCATCTCCAGTCTCTGAA---------AGA---------------AGAAACTTGCTGCCTCCG-----GCCTCTCAAAGGAGGAACTCAC--C----------------AT--CTC--CAGTC--T--C
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59083674  74 + 153482349 CCATCTCCAGCCTCTAAA---------AGA---------------AGAAACTTGCTGCCTCCA-----GCCTCTCAAAGGAGGAACTCAC--C----------------AT--CTC--CAGTC--T--C
i ponAbe2.chr8                 C 0 C 0
s macFas5.chr8                  88463422  73 - 146850525 CAGTTATTAGTTTCTAAG---------AGA---------------ATGACCTC-TTATCTCCA-----GTTGGTTAGAGAAGAAACTCAC--C----------------CT--TTA--CAGCC--T--C
i macFas5.chr8                 C 0 C 0
s sarHar1.chr3_GL849771_random    179564  40 -    558665 -----------------------------------------------------GCTGTCTCCA-----TTAATTAATAGGAG-----CGC--T----------------AT--CTC--CAATA--G--T
i sarHar1.chr3_GL849771_random C 0 C 0
s ornAna1.Contig1391              114744  74 -    174025 TCGTCCGCAGCCTCCACT---------TTG---------------AGGAGCTCGTCGCTCGCA-----GCCTCCGCTCTGTGGAGCTCAT--C----------------GT--CGG--CAGCC--T--C
i ornAna1.Contig1391           C 0 I 119
s ficAlb2.chr4A                 19371547 107 +  21182716 caggtctgaatctcacag---------atcagactctcacagatTTGAACCTCACAGATCTGA-----ATCTCACAGATTTGAATCTCAC--AGATCTGAATCTCacagat--ttcagcagca--g--c
i ficAlb2.chr4A                C 0 C 0
s geoFor1.JH740049                182613  85 -   1550430 CCATCCCCAGCATCTCAG---------GGAAAATCC---------TGGTGTCATCCATTCCCA-----GCATCCCAGAG-------------AAAAACCACTGCCACCCAT--CCC--CACCA--T--C
i geoFor1.JH740049             T 149 C 0
s taeGut2.chr10                 17657092  88 -  20806668 CTCCTTCCAGCCCCTCAA---------AGCGGTTCCCCTCAGG-GCGGTTCCCGCTCCTTCCA-----GCCCCTCAGGG------------------CGGTTCCCGCCTCC--CTC--CAGCC--C--C
i taeGut2.chr10                I 12 C 0
s pseHum1.KB221275               1873291  45 +   2017280 -TCATCTCCATCCCTTGG---------GATGGTTTA---------TGGTGTTC--------------------------------------------------------AT--CTC--CATC---C--T
i pseHum1.KB221275             I 39 C 0
s galGal4.chrUn_AADN03023623        1771  44 -      5081 CCATCCCCAACCCATTAA---------TGGAGG------------AGTTTTCC--------------------------------------------------------AT--CCC--CAACC--C--A
i galGal4.chrUn_AADN03023623   C 0 C 0
s pelSin1.JH211051                 23037  44 +    476004 GAGCCCCCGGCCCAGGAG---------CGGAGG------------GAGTCAGA--------------------------------------------------------GC--CCC--CGGCC--C--A
i pelSin1.JH211051             C 0 C 0
s xenTro7.KB021650              39350390  70 - 150913983 ----CTACAGCCTCTTAG---------AGG---------------TGGACTAGAGATGCTACA-----GCCTCTTAGAGGTGGACTAGAG--A----------------TA--CTG--CCGCT--T--C
i xenTro7.KB021650             C 0 C 0
s fr3.chr10                      9064128  47 +   9126174 -CTCCACTGTTCCCCTCC---------AGC---------------A------------TCTGA----------ACAGGG---------AC--C----------------CT--TCC--CTGCC--T--C
i fr3.chr10                    I 16 C 0
s takFla1.KE121866                209347  47 +    220559 -CTCCACTGTTCCCCTCC---------AGC---------------A------------TCTGA----------ACAGGG---------AC--C----------------CT--TCC--CTGCC--T--C
i takFla1.KE121866             I 16 C 0
s oryLat2.ultracontig146            4168  78 -    113228 ----CTCTGTTTACAGTCTGATAGAGGAGC---------------A--------GTACTCTGATTACAGACTGACAGAGGAGCAG--TAC--T----------------CTGATTA--CAGTC--TGAC
i oryLat2.ultracontig146       I 17 C 0
s gasAcu1.chrXI                   298496  47 -  16706052 -CGTCTCGAGTCCTCCTC---------AGG---------------A---------------GA----------ACATGA---------AC-GT----------------CTGGAGT--CTTCC--T--C
i gasAcu1.chrXI                I 52 C 0
s danRer10.chr6                 58382987  69 +  60272633 --------AGCCAATCAA---------AGC---------------ACAGTTGGGGTTTTATCA------ACCAATCAGAAAGTAATATTCAAC----------------CT--TGA--AAGCCAAT--C
i danRer10.chr6                I 31 C 0
s astMex1.KB882255                 18048  73 -   1586233 -CCTCCTGAGCCTTGTAT---------AG------------------AGGTGACTTGTCATCA--TGAGTCTCATAAGAAGGTAACTTGC--C----------------CT--CCT--TAGCT--T--C
i astMex1.KB882255             I 31 C 0
s petMar2.GL478800                 10660  74 +    213094 CCCTACTGAGTCACCCAG---------AGG---------------GGACAGTGACTCTACTGA-----GTCACCCACAGGGGATAGTGAC--C----------------CT--ACT--GAGTC--A--C
i petMar2.GL478800             C 0 C 0
e tetNig2.chr10                  6379385   0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382   0 -   6649201 I
e hapBur1.JH425491                252157   0 -   1273513 I
e neoBri1.JH422308               3491820   0 -   5414369 I
e araMac1.AOUJ01470298               637   0 -       895 I
e anoCar2.chr1                 148577473   4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375822               2439586  31 +   2691611 I
e allMis1.JH739658                 38113 134 -    691381 I
e falPer1.KB390952               2753956   0 -  18327016 I
e falChe1.KB397350               1707310   0 -   3649919 I
e macEug2.GL124958                 26121   0 -     59456 I
e melGal1.chr7                  34310641   0 -  38723565 I
e anaPla1.KB742696               1254472   0 -   1270250 I
e amaVit1.AOCU01222764              1324   0 -      1397 I
e apaSpi1.KB929104                 22324   0 +    818693 I
e cheMyd1.KB605988                134509   0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736   1 +    779542 I
e melUnd1.JH556573                751858   2 +  10614383 I
e rheMac3.chr8                  61690256 4519 + 150158102 T
e chlSab2.chr8                  53284695 4759 + 139301422 T

a score=-94369.000000
s hg38.chr8_KI270814v1_alt        114245 25 +    141812 TCATAGAAGGGCATAATT-T-----------TCTCCA
s panTro4.chr8                  55016713 25 + 143986469 TCATAGAAGGGCGTAATT-T-----------TCTCCA
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59083748 25 + 153482349 TCATAGGAGGACATAATT-T-----------TCTCCA
i ponAbe2.chr8                 C 0 C 0
s macFas5.chr8                  88463495 25 - 146850525 TCAGAAATAGACTTCATT-A-----------TCCCCA
i macFas5.chr8                 C 0 C 0
s sarHar1.chr3_GL849771_random    179604 25 -    558665 TAGTAGCAGAGGAGCGCT-A-----------TCTCCA
i sarHar1.chr3_GL849771_random C 0 C 0
s ficAlb2.chr4A                 19371654 22 +  21182716 ctgagcaaa---CAGAAT-T-----------CCACCC
i ficAlb2.chr4A                C 0 I 41
s geoFor1.JH740049                182698 20 -   1550430 CCAGAGAAAAGCC------T-----------TCCCCA
i geoFor1.JH740049             C 0 I 25
s taeGut2.chr10                 17657180 25 -  20806668 TCAGGGCGGTTCCCGCTT-C-----------CCTCCA
i taeGut2.chr10                C 0 I 14
s pseHum1.KB221275               1873336 25 +   2017280 TCAGGGTGGATTTATGTC-A-----------TCTCCA
i pseHum1.KB221275             C 0 I 11
s galGal4.chrUn_AADN03023623        1815 19 -      5081 TTAATGGAG------GAG-T-----------TTTCCA
i galGal4.chrUn_AADN03023623   C 0 I 11
s pelSin1.JH211051                 23081 25 +    476004 GCGGCGGAGGGAGTCAGA-G-----------CCCCCG
i pelSin1.JH211051             C 0 I 14
s xenTro7.KB021650              39350460 25 - 150913983 TTAGAGGTGGACTAGAGA-T-----------GCTACT
i xenTro7.KB021650             C 0 C 0
s fr3.chr10                      9064175 21 +   9126174 ----AGCATCCCAACATC-T-----------CCGCTG
i fr3.chr10                    C 0 C 0
s takFla1.KE121866                209394 21 +    220559 ----AGCATCCCAACATC-T-----------CCGCTG
i takFla1.KE121866             C 0 C 0
s oryLat2.ultracontig146            4246 17 -    113228 ----AGAGGACCAGTA----------------CTCTG
i oryLat2.ultracontig146       C 0 C 0
s gasAcu1.chrXI                   298543 22 -  16706052 ----AGGGGAACATGAACGT-----------CTGGAG
i gasAcu1.chrXI                C 0 C 0
s danRer10.chr6                 58383056 21 +  60272633 ----AGAGCACAGATGGG-C-----------TTTCAG
i danRer10.chr6                C 0 C 0
s astMex1.KB882255                 18121 32 -   1586233 ----ACATGATGGTTGCT-CCTTGACATTTTTCTCTA
i astMex1.KB882255             C 0 C 0
s petMar2.GL478800                 10734 25 +    213094 CCAGAGGGGACAGTGACC-C-----------TACTGA
i petMar2.GL478800             C 0 C 0
e ornAna1.Contig1391              114818 119 -    174025 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375822               2439586 31 +   2691611 I
e allMis1.JH739658                 38113 134 -    691381 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL124958                 26121  0 -     59456 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929104                 22324  0 +    818693 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e melUnd1.JH556573                751858  2 +  10614383 I
e rheMac3.chr8                  61690256 4519 + 150158102 T
e chlSab2.chr8                  53284695 4759 + 139301422 T

a score=-15668.000000
s hg38.chr8_KI270814v1_alt        114270 6 +    141812 GCCTCT
s panTro4.chr8                  55016738 6 + 143986469 GCCTCT
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59083773 6 + 153482349 GCCTCT
i ponAbe2.chr8                 C 0 C 0
s macFas5.chr8                  88463520 6 - 146850525 GACTCT
i macFas5.chr8                 C 0 C 0
s sarHar1.chr3_GL849771_random    179629 4 -    558665 --TTAA
i sarHar1.chr3_GL849771_random C 0 C 0
s ornAna1.Contig1391              114937 6 -    174025 GGCCCT
i ornAna1.Contig1391           I 119 C 0
s ficAlb2.chr4A                 19371717 6 +  21182716 CCAATT
i ficAlb2.chr4A                I 41 C 0
s geoFor1.JH740049                182743 6 -   1550430 CCATCC
i geoFor1.JH740049             I 25 C 0
s taeGut2.chr10                 17657219 6 -  20806668 TTCCCC
i taeGut2.chr10                I 14 C 0
s pseHum1.KB221275               1873372 6 +   2017280 GGATTT
i pseHum1.KB221275             I 11 C 0
s galGal4.chrUn_AADN03023623        1845 6 -      5081 TTACCA
i galGal4.chrUn_AADN03023623   I 11 C 0
s pelSin1.JH211051                 23120 6 +    476004 GGAGTC
i pelSin1.JH211051             I 14 C 0
s xenTro7.KB021650              39350485 6 - 150913983 GCTTCT
i xenTro7.KB021650             C 0 C 0
s fr3.chr10                      9064196 5 +   9126174 -TTCCC
i fr3.chr10                    C 0 I 11
s takFla1.KE121866                209415 5 +    220559 -TTCCC
i takFla1.KE121866             C 0 I 11
s oryLat2.ultracontig146            4263 5 -    113228 -TTTAC
i oryLat2.ultracontig146       C 0 I 24
s gasAcu1.chrXI                   298565 5 -  16706052 -TCTTC
i gasAcu1.chrXI                C 0 I 13
s danRer10.chr6                 58383077 5 +  60272633 -TAGCC
i danRer10.chr6                C 0 I 3
s astMex1.KB882255                 18153 5 -   1586233 -CATCC
i astMex1.KB882255             C 0 T 156
s petMar2.GL478800                 10759 6 +    213094 GTCACC
i petMar2.GL478800             C 0 C 0
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375822               2439586 31 +   2691611 I
e allMis1.JH739658                 38113 134 -    691381 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL124958                 26121 0 -     59456 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929104                 22324 0 +    818693 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736 1 +    779542 I
e melUnd1.JH556573                751858 2 +  10614383 I
e rheMac3.chr8                  61690256 4519 + 150158102 T
e chlSab2.chr8                  53284695 4759 + 139301422 T

a score=-270083.000000
s hg38.chr8_KI270814v1_alt        114276 32 +    141812 CAGG-----------AAAAAA-AA------------AGA---CT---------TGCCATCTCCAG--------CCT--
s panTro4.chr8                  55016744 34 + 143986469 CAGG-------AA--AAAAAA-AA------------AGA---CT---------TGCCATCTCCAG--------CCT--
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59083779 31 + 153482349 CAGG------------AAAAA-AA------------AGA---CT---------TGCCATCTCCAG--------CCT--
i ponAbe2.chr8                 C 0 C 0
s macFas5.chr8                  88463526 28 - 146850525 CAGC---------------AA-TG------------AAA---CT---------TGCCATCTGCAC--------TTT--
i macFas5.chr8                 C 0 C 0
s sarHar1.chr3_GL849771_random    179633 26 -    558665 TAGG------------------GG------------AGG---AG---------TGCTGTCTCCAG--------TAA--
i sarHar1.chr3_GL849771_random C 0 C 0
s ornAna1.Contig1391              114943 29 -    174025 TTGA-------------CAGA-CA------------ACA---CA---------AGTCATTTCCA---------CTT--
i ornAna1.Contig1391           C 0 C 0
s ficAlb2.chr4A                 19371723 50 +  21182716 CAGGAGTCCTAGT--CCTCTC-AG------------GTC---TCATGTGTGGGACCCATTTCCCT--------CAT--
i ficAlb2.chr4A                C 0 C 0
s geoFor1.JH740049                182749 41 -   1550430 CCAGCATCCCAGA--AAAAGC-CA------------GTG---CC---------ACCCATCCCCAG--------CAT--
i geoFor1.JH740049             C 0 C 0
s taeGut2.chr10                 17657225 29 -  20806668 TCAG--------------GGC-GG------------CTC---TC---------GCCTCCTTCCAG--------CCC--
i taeGut2.chr10                C 0 C 0
s pseHum1.KB221275               1873378 20 +   2017280 ATGG---------------------------------------T---------GCTCATCTCCAT--------CCC--
i pseHum1.KB221275             C 0 C 0
s galGal4.chrUn_AADN03023623        1851 25 -      5081 ATGG-------------------G------------AAG---TT---------TTCCATCCCCAA--------CCC--
i galGal4.chrUn_AADN03023623   C 0 C 0
s pelSin1.JH211051                 23126 19 +    476004 AGAG-------------------------------------------------CCCCCGGCCCAG--------CGG--
i pelSin1.JH211051             C 0 C 0
s xenTro7.KB021650              39350491 51 - 150913983 TAGAGACTAGAGATGAACTAG-AC------------ATG---CT---------AGGTatatctagtagaaatacat--
i xenTro7.KB021650             C 0 C 0
s fr3.chr10                      9064212 22 +   9126174 ----------------------GA------------ACA---GG---------GACCCTCCCCTG--------CCT--
i fr3.chr10                    I 11 I 6
s takFla1.KE121866                209431 22 +    220559 ----------------------GA------------ACA---GG---------GACCCTCCCCTG--------CCT--
i takFla1.KE121866             I 11 I 6
s oryLat2.ultracontig146            4292 34 -    113228 ----------------------GATTACAGACTGACAGA---GG---------AGCAGTACTCTG--------ATT--
i oryLat2.ultracontig146       I 24 I 15
s gasAcu1.chrXI                   298583 30 -  16706052 ----------------------GA------------ACGTCTGG---------AGTCTTCCTCAGGGGAA---CAT--
i gasAcu1.chrXI                I 13 I 107
s danRer10.chr6                 58383085 25 +  60272633 -------------------CA-GA------------AAA--TAT---------GATAAAACATTG--------ACA--
i danRer10.chr6                I 3 I 4
s astMex1.KB882255                 18002 26 -   1586233 -------------------CATGA------------ACG--TAA---------CTTGTTCTCTTG--------AGT--
i astMex1.KB882255             T 156 I 4
s petMar2.GL478800                 10765 30 +    213094 ---------------CAGAGG-GG------------ACA---GT---------GACTCTACTGAG--------TCACC
i petMar2.GL478800             C 0 C 0
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375822               2439586 31 +   2691611 I
e allMis1.JH739658                 38113 134 -    691381 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL124958                 26121  0 -     59456 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929104                 22324  0 +    818693 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e melUnd1.JH556573                751858  2 +  10614383 I
e rheMac3.chr8                  61690256 4519 + 150158102 T
e chlSab2.chr8                  53284695 4759 + 139301422 T

a score=-247715.000000
s hg38.chr8_KI270814v1_alt        114308 17 +    141812 CTCAGG--A---------------------------GAAA--CTCATT-----------
s panTro4.chr8                  55016778 17 + 143986469 CTCAGG--A---------------------------GAAA--CTCATT-----------
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59083810 17 + 153482349 CTCAGG--A---------------------------GAAA--CTCATC-----------
i ponAbe2.chr8                 C 0 C 0
s macFas5.chr8                  88463554 19 - 146850525 TTCAGAGCA---------------------------GACG--TTCATT-----------
i macFas5.chr8                 C 0 C 0
s sarHar1.chr3_GL849771_random    179659 19 -    558665 TTCATA--A---------------------------GGAAGGAGCACT-----------
i sarHar1.chr3_GL849771_random C 0 C 0
s ornAna1.Contig1391              114972 17 -    174025 CCCAAG--C---------------------------TCCT--GTCCCT-----------
i ornAna1.Contig1391           C 0 C 0
s ficAlb2.chr4A                 19371773 16 +  21182716 CCC-------------------TTCTCTGGAAATC------------------------
i ficAlb2.chr4A                C 0 C 0
s geoFor1.JH740049                182790 22 -   1550430 CTCAGG--G-----------AAAATCCTGGTGTCA------------------------
i geoFor1.JH740049             C 0 C 0
s taeGut2.chr10                 17657254 16 -  20806668 CTCAGG--A-----------CCGTTCCCG------------------------------
i taeGut2.chr10                C 0 C 0
s pseHum1.KB221275               1873398 22 +   2017280 CTG-GG--A-----------TGGTTTGTGGTGCTCA-----------------------
i pseHum1.KB221275             C 0 C 0
s galGal4.chrUn_AADN03023623        1876  6 -      5081 GTTAAT-----------------------------------------------------
i galGal4.chrUn_AADN03023623   C 0 C 0
s pelSin1.JH211051                 23145 34 +    476004 Cggagg--gagtcagagcccccggcccaggagcgga-----------------------
i pelSin1.JH211051             C 0 C 0
s xenTro7.KB021650              39350542  1 - 150913983 t----------------------------------------------------------
i xenTro7.KB021650             C 0 T 517
s fr3.chr10                      9064240  6 +   9126174 ------------------------------------------CCCAAC-----------
i fr3.chr10                    I 6 I 15
s takFla1.KE121866                209459  6 +    220559 ------------------------------------------CCCAAC-----------
i takFla1.KE121866             I 6 I 15
s oryLat2.ultracontig146            4341  6 -    113228 ------------------------------------------ACCAGT-----------
i oryLat2.ultracontig146       I 15 I 11
s gasAcu1.chrXI                   298720  6 -  16706052 ------------------------------------------CTCAGG-----------
i gasAcu1.chrXI                I 107 I 24
s danRer10.chr6                 58383114  6 +  60272633 ------------------------------------------ATCAGA-----------
i danRer10.chr6                I 4 I 7
s astMex1.KB882255                 18032  6 -   1586233 ------------------------------------------TATGGA-----------
i astMex1.KB882255             I 4 I 11
s petMar2.GL478800                 10795 17 +    213094 ------------------------------------------CACAGGGGACAGTGACT
i petMar2.GL478800             C 0 C 0
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375822               2439586 31 +   2691611 I
e allMis1.JH739658                 38113 134 -    691381 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL124958                 26121  0 -     59456 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929104                 22324  0 +    818693 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e melUnd1.JH556573                751858  2 +  10614383 I
e rheMac3.chr8                  61690256 4519 + 150158102 T
e chlSab2.chr8                  53284695 4759 + 139301422 T

a score=-50539.000000
s hg38.chr8_KI270814v1_alt        114325 20 +    141812 GT------CTCC--AGCCTTTCA----GAGGA
s panTro4.chr8                  55016795 20 + 143986469 GT------CTCC--AGCCTTTCA----GAGGA
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59083827 20 + 153482349 AT------CTCC--AGCCTTTCA----GAGGA
i ponAbe2.chr8                 C 0 C 0
s macFas5.chr8                  88463573 20 - 146850525 AT------CTTC--CACCTTTCA----CAGGA
i macFas5.chr8                 C 0 T 8569
s sarHar1.chr3_GL849771_random    179678 20 -    558665 GT------CTCC--AATATTTAG----TAGGG
i sarHar1.chr3_GL849771_random C 0 C 0
s ornAna1.Contig1391              114989 30 -    174025 GTGCCCTGCTGC--CATCTTGCACCCTGAGGC
i ornAna1.Contig1391           C 0 C 0
s xenTro7.KB021650              39350026 22 - 150913983 ----GATGCTAC--AGCCTCTTA----GAGGT
i xenTro7.KB021650             T 517 C 0
s fr3.chr10                      9064261  4 +   9126174 --------ctcc--------------------
i fr3.chr10                    I 15 C 0
s takFla1.KE121866                209480  4 +    220559 --------ctcc--------------------
i takFla1.KE121866             I 15 C 0
s oryLat2.ultracontig146            4358 11 -    113228 --------AGTCTGAT-------------AGA
i oryLat2.ultracontig146       I 11 C 0
s gasAcu1.chrXI                   298750  6 -  16706052 --------CTCA------------------GG
i gasAcu1.chrXI                I 24 C 0
s danRer10.chr6                 58383127 16 +  60272633 ------------TAGGCCATCAA----AAAGA
i danRer10.chr6                I 7 C 0
s astMex1.KB882255                 18049 20 -   1586233 --------CTCCTGAGCCTTGTA----TAGAG
i astMex1.KB882255             I 11 C 0
s petMar2.GL478800                 10812 20 +    213094 --------CTACTGAGTCACCCA----GAGGG
i petMar2.GL478800             C 0 C 0
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e ficAlb2.chr4A                 19371789  0 +  21182716 C
e anoCar2.chr1                 148577473  4 + 263920458 I
e pseHum1.KB221275               1873420  0 +   2017280 C
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375822               2439586 31 +   2691611 I
e allMis1.JH739658                 38113 134 -    691381 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL124958                 26121  0 -     59456 I
e galGal4.chrUn_AADN03023623        1882  0 -      5081 C
e geoFor1.JH740049                182812  0 -   1550430 C
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929104                 22324  0 +    818693 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e pelSin1.JH211051                 23179  0 +    476004 C
e melUnd1.JH556573                751858  2 +  10614383 I
e taeGut2.chr10                 17657270  0 -  20806668 C
e rheMac3.chr8                  61690256 4519 + 150158102 T
e chlSab2.chr8                  53284695 4759 + 139301422 T

a score=-159469.000000
s hg38.chr8_KI270814v1_alt        114345 27 +    141812 GAGAGTCACCATGTC-CAGT--TTCTCAGA
s panTro4.chr8                  55016815 27 + 143986469 GAGAGTCACCATGTC-CAGT--TTCTCAGA
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59083847 27 + 153482349 GAGAGTCACCATGTC-CAGT--TTCTCAGA
i ponAbe2.chr8                 C 0 C 0
s macFas5.chr8                  88455024 27 - 146850525 GCAGCTCACTTTTTA-CAGT--TTCCTAGA
i macFas5.chr8                 T 8569 C 0
s sarHar1.chr3_GL849771_random    179698 29 -    558665 GAGGAGCACTGTCTC-CAGTAATTCATAGG
i sarHar1.chr3_GL849771_random C 0 C 0
s ornAna1.Contig1391              115019 25 -    174025 AAGGCTGGATGTGCC-CGGC--TGGC--GA
i ornAna1.Contig1391           C 0 C 0
s ficAlb2.chr4A                 19371789 20 +  21182716 -------ATTATGCC-CATC--TTCTATGA
i ficAlb2.chr4A                C 0 n 0
s geoFor1.JH740049                182812 20 -   1550430 -------TCCATTCC-CAGC--ATCCCAGA
i geoFor1.JH740049             C 0 C 0
s taeGut2.chr10                 17657270 15 -  20806668 ------------CCC-TCGG--GTCCCCCG
i taeGut2.chr10                C 0 C 0
s pseHum1.KB221275               1873420 15 +   2017280 --T---GTCCATCCC-TCAG--G-------
i pseHum1.KB221275             C 0 C 0
s pelSin1.JH211051                 23179 25 +    476004 --gggagtcagagcc-cccg--gcccagga
i pelSin1.JH211051             C 0 I 2
s xenTro7.KB021650              39350048 27 - 150913983 -GGATTAGAGATGCTACAGC--CTCTTAGA
i xenTro7.KB021650             C 0 I 3
s fr3.chr10                      9064265  1 +   9126174 -----------------------------a
i fr3.chr10                    C 0 I 11
s takFla1.KE121866                209484  1 +    220559 -----------------------------a
i takFla1.KE121866             C 0 I 11
s oryLat2.ultracontig146            4369  3 -    113228 ---------------------------GGA
i oryLat2.ultracontig146       C 0 I 27
s gasAcu1.chrXI                   298756  3 -  16706052 ---------------------------GGA
i gasAcu1.chrXI                C 0 I 12
s danRer10.chr6                 58383143  3 +  60272633 ---------------------------AAG
i danRer10.chr6                C 0 I 23
s astMex1.KB882255                 18069  3 -   1586233 ---------------------------GTG
i astMex1.KB882255             C 0 I 22
s petMar2.GL478800                 10832 27 +    213094 GACAGTGACTCTACT-GAGT--CACCCAGA
i petMar2.GL478800             C 0 C 0
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375822               2439586 31 +   2691611 I
e allMis1.JH739658                 38113 134 -    691381 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL124958                 26121  0 -     59456 I
e galGal4.chrUn_AADN03023623        1882  0 -      5081 C
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929104                 22324  0 +    818693 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e melUnd1.JH556573                751858  2 +  10614383 I
e rheMac3.chr8                  61690256 4519 + 150158102 T
e chlSab2.chr8                  53284695 4759 + 139301422 T

a score=-143823.000000
s hg38.chr8_KI270814v1_alt        114372 14 +    141812 GGA--GGAGC-----TCACT-G
s panTro4.chr8                  55016842 14 + 143986469 GGA--GGAGC-----TCACT-G
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59083874 14 + 153482349 AGA--GGAGC-----TCACT-G
i ponAbe2.chr8                 C 0 C 0
s macFas5.chr8                  88455051 14 - 146850525 GGA--AGACC-----TCAAC-C
i macFas5.chr8                 C 0 C 0
s sarHar1.chr3_GL849771_random    179727 12 -    558665 GAA--GGAG-------CACT-G
i sarHar1.chr3_GL849771_random C 0 C 0
s ornAna1.Contig1391              115044 14 -    174025 GGA--TGAGC-----TCTTT-G
i ornAna1.Contig1391           C 0 I 3
s geoFor1.JH740049                182832 12 -   1550430 -GA--AAAAC-----CACTG--
i geoFor1.JH740049             C 0 I 10
s taeGut2.chr10                 17657285 12 -  20806668 -GG--GCGGC-----TCTCG--
i taeGut2.chr10                C 0 n 0
s pseHum1.KB221275               1873435 11 +   2017280 --G--TGGAT-----TTATG--
i pseHum1.KB221275             C 0 I 3
s galGal4.chrUn_AADN03023623        1882 12 -      5081 -GG--AGGAG-----TTTTC--
i galGal4.chrUn_AADN03023623   C 0 I 2
s pelSin1.JH211051                 23206 14 +    476004 gga--gggag-----tcagag-
i pelSin1.JH211051             I 2 C 0
s xenTro7.KB021650              39350078 11 - 150913983 GGACTAGAGA-----T------
i xenTro7.KB021650             I 3 C 0
s fr3.chr10                      9064277 14 +   9126174 -----GGGACCCTCCCCTG---
i fr3.chr10                    I 11 C 0
s takFla1.KE121866                209496 14 +    220559 -----GGGACCCTCCCCTG---
i takFla1.KE121866             I 11 C 0
s oryLat2.ultracontig146            4399 14 -    113228 -----GGAGCAGTACTCTG---
i oryLat2.ultracontig146       I 27 C 0
s gasAcu1.chrXI                   298771 14 -  16706052 -----GGAGTCCTCCTCAG---
i gasAcu1.chrXI                I 12 C 0
s danRer10.chr6                 58383169 13 +  60272633 -----AGAACATAA-TCAA---
i danRer10.chr6                I 23 C 0
s astMex1.KB882255                 18094 14 -   1586233 -----AGAAGGTAACTTGC---
i astMex1.KB882255             I 22 C 0
s petMar2.GL478800                 10859 14 +    213094 -GG--GGACAGTGACTC-----
i petMar2.GL478800             C 0 C 0
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e ficAlb2.chr4A                 19371809  0 +  21182716 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375822               2439586 31 +   2691611 I
e allMis1.JH739658                 38113 134 -    691381 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL124958                 26121  0 -     59456 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929104                 22324  0 +    818693 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e melUnd1.JH556573                751858  2 +  10614383 I
e rheMac3.chr8                  61690256 4519 + 150158102 T
e chlSab2.chr8                  53284695 4759 + 139301422 T

a score=-193041.000000
s hg38.chr8_KI270814v1_alt        114386 41 +    141812 TCTT---------CAGC-------CTCTCAAAG-----------------TAG------------------G----GCT---TTAC----CATCTCCTG-----CTAC
s panTro4.chr8                  55016856 62 + 143986469 TCTT---------CAGC-------CTCTCAAAG-----------------TAGGCTGAAGTAGCCAAAGATG----GCTGAGTAGC----CATCTCCTG-----CTAC
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59083888 41 + 153482349 TCTT---------CAGT-------CTCTCAAAG-----------------TAG------------------G----ACT---TTGC----CATCTCCTG-----CCAC
i ponAbe2.chr8                 C 0 C 0
s macFas5.chr8                  88455065 58 - 146850525 TCTA---------CAGG-------CTCTCAGAGGAAGACTTTGCCATCTCTAG------------------G----ACT---TTGC----CATCTCTAA-----CCCC
i macFas5.chr8                 C 0 C 0
s sarHar1.chr3_GL849771_random    179739 41 -    558665 TCTC---------CAAT-------ATTTAGTAG-----------------GGG------------------A----GGA---GCAC----TGTCTCCAG-----TAAT
i sarHar1.chr3_GL849771_random C 0 C 0
s ornAna1.Contig1391              115061 53 -    174025 TGTT---------CAACAATTACGCTCccatat-----------------tca------------------a----ggt---ttat----ctcctccaggagaccttc
i ornAna1.Contig1391           I 3 C 0
s geoFor1.JH740049                182854 32 -   1550430 CCAC---------CATC-------CCAG--AGA-----------------AAA------------------G-------------C----CTTCCCCA------GCAT
i geoFor1.JH740049             I 10 C 0
s pseHum1.KB221275               1873449 42 +   2017280 TCTC---------CATC-------CCTT--GGG-----------------ATG------------------GTTTATGG---TGCT----CCTTTCCA------CCAC
i pseHum1.KB221275             I 3 C 0
s galGal4.chrUn_AADN03023623        1896 42 -      5081 TCCC---------CAAC-------CCATTAATG-----------------ATG------------------G----GGT---TTTC----CATCCCCAA----CCCAT
i galGal4.chrUn_AADN03023623   I 2 C 0
s pelSin1.JH211051                 23220 42 +    476004 cccc---------cggc-------ccaggagcg-----------------gag------------------g----gag---tcag----agcccccgg----cccag
i pelSin1.JH211051             C 0 C 0
s xenTro7.KB021650              39350089 41 - 150913983 GCTA---------CAGG-------CTCTTAGAG-----------------GTG------------------G----ACT---AGAG----ATGCTACAG-----CCTC
i xenTro7.KB021650             C 0 C 0
s fr3.chr10                      9064291 40 +   9126174 -CCT---------CAGC-------ATCCCAACA-----------------TCT------------------C----CGC---TGTT----CCCCTCCAG-----CATC
i fr3.chr10                    C 0 I 1
s takFla1.KE121866                209510 40 +    220559 -CCT---------CAGC-------ATCCCAACA-----------------TCT------------------C----CGC---TGTT----CCCCTCCAG-----CATC
i takFla1.KE121866             C 0 I 1
s oryLat2.ultracontig146            4413 39 -    113228 -ATTACAGTCTGACAGA-------GGACCAGTA-------------------------------------------CTC---TGTT--------TACAG-------TC
i oryLat2.ultracontig146       C 0 I 1
s gasAcu1.chrXI                   298785 37 -  16706052 -------------GAGA-------ACATGAACG-----------------TCT------------------G----GAG---TCTT----CCTCAGGGG-----AACA
i gasAcu1.chrXI                C 0 I 1
s danRer10.chr6                 58383182 44 +  60272633 -TTT---------CATT-------AACCAATCA-----------------GAA------------------A----GTA---AGATACAACCTTGACAG-----CCAA
i danRer10.chr6                C 0 I 5
s astMex1.KB882255                 18108 40 -   1586233 -CCT---------CCTT-------AGCTTCACA-----------------TGA------------------T----GGT---TGCT----CCTTGACAT-----TTTT
i astMex1.KB882255             C 0 N 0
s petMar2.GL478800                 10873 41 +    213094 TACT---------GAGT-------CACCCAGAG-----------------GGG------------------A----CAG---TGAC----CCTACTGAG-----TCAC
i petMar2.GL478800             C 0 C 0
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e ficAlb2.chr4A                 19371809  0 +  21182716 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375822               2439586 31 +   2691611 I
e allMis1.JH739658                 38113 134 -    691381 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL124958                 26121  0 -     59456 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929104                 22324  0 +    818693 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e melUnd1.JH556573                751858  2 +  10614383 I
e taeGut2.chr10                 17657297  0 -  20806668 I
e rheMac3.chr8                  61690256 4519 + 150158102 T
e chlSab2.chr8                  53284695 4759 + 139301422 T

a score=-77118.000000
s hg38.chr8_KI270814v1_alt        114427 18 +    141812 TC-AGA--------GAAGA-----AGCTCCCC
s panTro4.chr8                  55016918 18 + 143986469 TC-AGA--------GAAGA-----AGCTCCCC
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59083929 18 + 153482349 TC-AGA--------GAAGA-----AGCTCCCC
i ponAbe2.chr8                 C 0 C 0
s macFas5.chr8                  88455123 18 - 146850525 TC-AGA--------AGAGG-----ACTCCGCC
i macFas5.chr8                 C 0 C 0
s sarHar1.chr3_GL849771_random    179780 18 -    558665 TC-ATA--------AGGAA-----GGAGCACC
i sarHar1.chr3_GL849771_random C 0 C 0
s ornAna1.Contig1391              115114 14 -    174025 cc-aga--------ccaag---------cccc
i ornAna1.Contig1391           C 0 C 0
s geoFor1.JH740049                182886 22 -   1550430 CC-CAG--------AGAGAAACAGTGGCAGC-
i geoFor1.JH740049             C 0 I 1
s pseHum1.KB221275               1873491 17 +   2017280 TC-AGG--------ACACA-----TTTTACC-
i pseHum1.KB221275             C 0 I 7837
s galGal4.chrUn_AADN03023623        1938 17 -      5081 TA-ACG--------ATGGG-----GTTTTCC-
i galGal4.chrUn_AADN03023623   C 0 C 0
s pelSin1.JH211051                 23262 17 +    476004 ga-gGG--------AAGGG-----AGTCAGA-
i pelSin1.JH211051             C 0 C 0
s xenTro7.KB021650              39350130 18 - 150913983 TT-AGAGGTGGACTAGAGA-------------
i xenTro7.KB021650             C 0 I 1
s fr3.chr10                      9064332 17 +   9126174 GA-ACA--------GGGAC-----CCTTCCC-
i fr3.chr10                    I 1 C 0
s takFla1.KE121866                209551 17 +    220559 GA-ACA--------GGGAC-----CCTTCCC-
i takFla1.KE121866             I 1 C 0
s oryLat2.ultracontig146            4453 18 -    113228 GATAGA--------GGAGC-----AGTACTC-
i oryLat2.ultracontig146       I 1 C 0
s gasAcu1.chrXI                   298823 17 -  16706052 GA-ACG--------TCTAG-----AGTCCTC-
i gasAcu1.chrXI                I 1 C 0
s danRer10.chr6                 58383231 17 +  60272633 GC-ACA--------GATGA-----GCTTTCA-
i danRer10.chr6                I 5 C 0
s petMar2.GL478800                 10914 18 +    213094 CC-AGA--------GGGGA----CAGTGACC-
i petMar2.GL478800             C 0 C 0
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e ficAlb2.chr4A                 19371809  0 +  21182716 I
e anoCar2.chr1                 148577473  4 + 263920458 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375822               2439586 31 +   2691611 I
e allMis1.JH739658                 38113 134 -    691381 I
e falPer1.KB390952               2753956  0 -  18327016 I
e falChe1.KB397350               1707310  0 -   3649919 I
e macEug2.GL124958                 26121  0 -     59456 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.AOCU01222764              1324  0 -      1397 I
e apaSpi1.KB929104                 22324  0 +    818693 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736  1 +    779542 I
e melUnd1.JH556573                751858  2 +  10614383 I
e taeGut2.chr10                 17657297  0 -  20806668 I
e rheMac3.chr8                  61690256 4519 + 150158102 T
e chlSab2.chr8                  53284695 4759 + 139301422 T

a score=-8791.000000
s hg38.chr8_KI270814v1_alt        114445 1 +    141812 -A
s panTro4.chr8                  55016936 1 + 143986469 -A
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59083947 1 + 153482349 -A
i ponAbe2.chr8                 C 0 C 0
s macFas5.chr8                  88455141 1 - 146850525 -A
i macFas5.chr8                 C 0 C 0
s sarHar1.chr3_GL849771_random    179798 1 -    558665 -G
i sarHar1.chr3_GL849771_random C 0 C 0
s ornAna1.Contig1391              115128 1 -    174025 -a
i ornAna1.Contig1391           C 0 C 0
s geoFor1.JH740049                182909 1 -   1550430 -A
i geoFor1.JH740049             I 1 C 0
s galGal4.chrUn_AADN03023623        1955 1 -      5081 -A
i galGal4.chrUn_AADN03023623   C 0 C 0
s pelSin1.JH211051                 23279 1 +    476004 -G
i pelSin1.JH211051             C 0 C 0
s xenTro7.KB021650              39350149 1 - 150913983 -G
i xenTro7.KB021650             I 1 C 0
s fr3.chr10                      9064349 1 +   9126174 -T
i fr3.chr10                    C 0 I 17
s takFla1.KE121866                209568 1 +    220559 -T
i takFla1.KE121866             C 0 I 17
s oryLat2.ultracontig146            4471 1 -    113228 -T
i oryLat2.ultracontig146       C 0 I 15
s gasAcu1.chrXI                   298840 1 -  16706052 -A
i gasAcu1.chrXI                C 0 N 0
s danRer10.chr6                 58383248 1 +  60272633 -G
i danRer10.chr6                C 0 C 0
s petMar2.GL478800                 10932 1 +    213094 C-
i petMar2.GL478800             C 0 C 0
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e ficAlb2.chr4A                 19371809 0 +  21182716 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221275               1873508 7837 +   2017280 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375822               2439586 31 +   2691611 I
e allMis1.JH739658                 38113 134 -    691381 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL124958                 26121 0 -     59456 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929104                 22324 0 +    818693 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736 1 +    779542 I
e melUnd1.JH556573                751858 2 +  10614383 I
e taeGut2.chr10                 17657297 0 -  20806668 I
e rheMac3.chr8                  61690256 4519 + 150158102 T
e chlSab2.chr8                  53284695 4759 + 139301422 T

a score=-7893.000000
s hg38.chr8_KI270814v1_alt        114446 3 +    141812 CCT--
s panTro4.chr8                  55016937 3 + 143986469 CCT--
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59083948 3 + 153482349 CCT--
i ponAbe2.chr8                 C 0 C 0
s macFas5.chr8                  88455142 3 - 146850525 TCT--
i macFas5.chr8                 C 0 C 0
s sarHar1.chr3_GL849771_random    179799 3 -    558665 TCT--
i sarHar1.chr3_GL849771_random C 0 C 0
s ornAna1.Contig1391              115129 3 -    174025 cct--
i ornAna1.Contig1391           C 0 n 0
s geoFor1.JH740049                182910 3 -   1550430 TCC--
i geoFor1.JH740049             C 0 C 0
s galGal4.chrUn_AADN03023623        1956 3 -      5081 TCC--
i galGal4.chrUn_AADN03023623   C 0 C 0
s pelSin1.JH211051                 23280 3 +    476004 Ccc--
i pelSin1.JH211051             C 0 C 0
s xenTro7.KB021650              39350150 2 - 150913983 CT---
i xenTro7.KB021650             C 0 C 0
s fr3.chr10                      9064367 3 +   9126174 TCT--
i fr3.chr10                    I 17 C 0
s takFla1.KE121866                209586 3 +    220559 TCT--
i takFla1.KE121866             I 17 C 0
s oryLat2.ultracontig146            4487 3 -    113228 GAG--
i oryLat2.ultracontig146       I 15 C 0
s danRer10.chr6                 58383249 3 +  60272633 TAT--
i danRer10.chr6                C 0 C 0
s petMar2.GL478800                 10933 3 +    213094 --TAC
i petMar2.GL478800             C 0 C 0
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e ficAlb2.chr4A                 19371809 0 +  21182716 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221275               1873508 7837 +   2017280 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375822               2439586 31 +   2691611 I
e allMis1.JH739658                 38113 134 -    691381 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL124958                 26121 0 -     59456 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929104                 22324 0 +    818693 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736 1 +    779542 I
e melUnd1.JH556573                751858 2 +  10614383 I
e taeGut2.chr10                 17657297 0 -  20806668 I
e rheMac3.chr8                  61690256 4519 + 150158102 T
e chlSab2.chr8                  53284695 4759 + 139301422 T

a score=9002.000000
s hg38.chr8_KI270814v1_alt        114449 6 +    141812 CCAGCC
s panTro4.chr8                  55016940 6 + 143986469 CCAGCC
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59083951 6 + 153482349 CCAGCC
i ponAbe2.chr8                 C 0 C 0
s macFas5.chr8                  88455145 6 - 146850525 TTAGCC
i macFas5.chr8                 C 0 C 0
s sarHar1.chr3_GL849771_random    179802 6 -    558665 CCAATA
i sarHar1.chr3_GL849771_random C 0 C 0
s geoFor1.JH740049                182913 6 -   1550430 CCAGCA
i geoFor1.JH740049             C 0 C 0
s galGal4.chrUn_AADN03023623        1959 6 -      5081 CCAACC
i galGal4.chrUn_AADN03023623   C 0 C 0
s pelSin1.JH211051                 23283 6 +    476004 ccggcc
i pelSin1.JH211051             C 0 C 0
s xenTro7.KB021650              39350152 6 - 150913983 ACAGCC
i xenTro7.KB021650             C 0 C 0
s fr3.chr10                      9064370 5 +   9126174 -CCGCT
i fr3.chr10                    C 0 I 3
s takFla1.KE121866                209589 5 +    220559 -CCGCT
i takFla1.KE121866             C 0 I 3
s oryLat2.ultracontig146            4490 5 -    113228 -GAGCA
i oryLat2.ultracontig146       C 0 I 2
s danRer10.chr6                 58383252 5 +  60272633 -CCAAT
i danRer10.chr6                C 0 N 0
s petMar2.GL478800                 10936 6 +    213094 TGAGTC
i petMar2.GL478800             C 0 C 0
e ornAna1.Contig1391              115132 0 -    174025 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e ficAlb2.chr4A                 19371809 0 +  21182716 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221275               1873508 7837 +   2017280 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375822               2439586 31 +   2691611 I
e allMis1.JH739658                 38113 134 -    691381 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL124958                 26121 0 -     59456 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929104                 22324 0 +    818693 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736 1 +    779542 I
e melUnd1.JH556573                751858 2 +  10614383 I
e taeGut2.chr10                 17657297 0 -  20806668 I
e rheMac3.chr8                  61690256 4519 + 150158102 T
e chlSab2.chr8                  53284695 4759 + 139301422 T

a score=4710.000000
s hg38.chr8_KI270814v1_alt        114455 5 +    141812 TCTCA
s panTro4.chr8                  55016946 5 + 143986469 TCTCA
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59083957 5 + 153482349 TCTCA
i ponAbe2.chr8                 C 0 C 0
s macFas5.chr8                  88455151 5 - 146850525 TCTCA
i macFas5.chr8                 C 0 n 0
s sarHar1.chr3_GL849771_random    179808 5 -    558665 TTTAG
i sarHar1.chr3_GL849771_random C 0 I 2
s geoFor1.JH740049                182919 5 -   1550430 TCCCA
i geoFor1.JH740049             C 0 C 0
s galGal4.chrUn_AADN03023623        1965 5 -      5081 CATTA
i galGal4.chrUn_AADN03023623   C 0 C 0
s pelSin1.JH211051                 23289 5 +    476004 cagca
i pelSin1.JH211051             C 0 C 0
s xenTro7.KB021650              39350158 5 - 150913983 TCTTA
i xenTro7.KB021650             C 0 C 0
s fr3.chr10                      9064378 5 +   9126174 CCCCT
i fr3.chr10                    I 3 C 0
s takFla1.KE121866                209597 5 +    220559 CCCCT
i takFla1.KE121866             I 3 C 0
s oryLat2.ultracontig146            4497 5 -    113228 ACTCT
i oryLat2.ultracontig146       I 2 C 0
s danRer10.chr19                48218190 5 -  48790377 TATCA
i danRer10.chr19               N 0 C 0
s petMar2.GL478800                 10942 5 +    213094 ACCCA
i petMar2.GL478800             C 0 C 0
e ornAna1.Contig1391              115132 0 -    174025 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e ficAlb2.chr4A                 19371809 0 +  21182716 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221275               1873508 7837 +   2017280 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375822               2439586 31 +   2691611 I
e allMis1.JH739658                 38113 134 -    691381 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL124958                 26121 0 -     59456 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929104                 22324 0 +    818693 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736 1 +    779542 I
e melUnd1.JH556573                751858 2 +  10614383 I
e taeGut2.chr10                 17657297 0 -  20806668 I
e rheMac3.chr8                  61690256 4519 + 150158102 T
e chlSab2.chr8                  53284695 4759 + 139301422 T

a score=6600.000000
s hg38.chr8_KI270814v1_alt        114460 1 +    141812 G
s panTro4.chr8                  55016951 1 + 143986469 G
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59083962 1 + 153482349 G
i ponAbe2.chr8                 C 0 C 0
s sarHar1.chr3_GL849771_random    179815 1 -    558665 G
i sarHar1.chr3_GL849771_random I 2 C 0
s geoFor1.JH740049                182924 1 -   1550430 G
i geoFor1.JH740049             C 0 I 1
s pelSin1.JH211051                 23294 1 +    476004 g
i pelSin1.JH211051             C 0 C 0
s xenTro7.KB021650              39350163 1 - 150913983 G
i xenTro7.KB021650             C 0 I 3
s fr3.chr10                      9064383 1 +   9126174 G
i fr3.chr10                    C 0 I 2
s takFla1.KE121866                209602 1 +    220559 G
i takFla1.KE121866             C 0 I 2
s oryLat2.ultracontig146            4502 1 -    113228 G
i oryLat2.ultracontig146       C 0 I 2
s danRer10.chr19                48218195 1 -  48790377 G
i danRer10.chr19               C 0 I 5198
s petMar2.GL478800                 10947 1 +    213094 G
i petMar2.GL478800             C 0 C 0
e ornAna1.Contig1391              115132 0 -    174025 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e ficAlb2.chr4A                 19371809 0 +  21182716 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221275               1873508 7837 +   2017280 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375822               2439586 31 +   2691611 I
e allMis1.JH739658                 38113 134 -    691381 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL124958                 26121 0 -     59456 I
e galGal4.chrUn_AADN03023623        1970 0 -      5081 C
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929104                 22324 0 +    818693 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736 1 +    779542 I
e melUnd1.JH556573                751858 2 +  10614383 I
e taeGut2.chr10                 17657297 0 -  20806668 I
e rheMac3.chr8                  61690256 4519 + 150158102 T
e macFas5.chr8                  88455156 0 - 146850525 I
e chlSab2.chr8                  53284695 4759 + 139301422 T

a score=1304.000000
s hg38.chr8_KI270814v1_alt        114461 2 +    141812 TG
s panTro4.chr8                  55016952 2 + 143986469 TG
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59083963 2 + 153482349 TG
i ponAbe2.chr8                 C 0 C 0
s sarHar1.chr3_GL849771_random    179816 2 -    558665 GG
i sarHar1.chr3_GL849771_random C 0 C 0
s pelSin1.JH211051                 23295 2 +    476004 cg
i pelSin1.JH211051             C 0 C 0
s xenTro7.KB021650              39350167 2 - 150913983 TG
i xenTro7.KB021650             I 3 C 0
s petMar2.GL478800                 10948 2 +    213094 AG
i petMar2.GL478800             C 0 C 0
e danRer10.chr19                48218196 5198 -  48790377 I
e ornAna1.Contig1391              115132 0 -    174025 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e oryLat2.ultracontig146            4503 2 -    113228 I
e takFla1.KE121866                209603 2 +    220559 I
e fr3.chr10                      9064384 2 +   9126174 I
e ficAlb2.chr4A                 19371809 0 +  21182716 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221275               1873508 7837 +   2017280 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375822               2439586 31 +   2691611 I
e allMis1.JH739658                 38113 134 -    691381 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL124958                 26121 0 -     59456 I
e galGal4.chrUn_AADN03023623        1970 0 -      5081 C
e geoFor1.JH740049                182925 1 -   1550430 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.AOCU01222764              1324 0 -      1397 I
e apaSpi1.KB929104                 22324 0 +    818693 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736 1 +    779542 I
e melUnd1.JH556573                751858 2 +  10614383 I
e taeGut2.chr10                 17657297 0 -  20806668 I
e rheMac3.chr8                  61690256 4519 + 150158102 T
e macFas5.chr8                  88455156 0 - 146850525 I
e chlSab2.chr8                  53284695 4759 + 139301422 T

a score=-22571.000000
s hg38.chr8_KI270814v1_alt        114463 4 +    141812 --GAGA
s panTro4.chr8                  55016954 4 + 143986469 --GAGA
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59083965 4 + 153482349 --GAGA
i ponAbe2.chr8                 C 0 C 0
s sarHar1.chr3_GL849771_random    179818 2 -    558665 --GA--
i sarHar1.chr3_GL849771_random C 0 N 0
s amaVit1.KB277496                  3888 3 -     10329 --TGG-
i amaVit1.KB277496             T 3737 C 0
s galGal4.chrUn_AADN03023623        1970 1 -      5081 ----A-
i galGal4.chrUn_AADN03023623   C 0 C 0
s pelSin1.JH211051                 23297 3 +    476004 --ggg-
i pelSin1.JH211051             C 0 C 0
s xenTro7.KB021650              39350169 1 - 150913983 --G---
i xenTro7.KB021650             C 0 I 2
s fr3.chr10                      9064386 2 +   9126174 --GA--
i fr3.chr10                    I 2 C 0
s takFla1.KE121866                209605 2 +    220559 --GA--
i takFla1.KE121866             I 2 C 0
s oryLat2.ultracontig146            4505 2 -    113228 --TA--
i oryLat2.ultracontig146       I 2 C 0
s petMar2.GL478800                 10950 4 +    213094 GGGA--
i petMar2.GL478800             C 0 C 0
e danRer10.chr19                48218196 5198 -  48790377 I
e ornAna1.Contig1391              115132 0 -    174025 I
e tetNig2.chr10                  6379385 0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e ficAlb2.chr4A                 19371809 0 +  21182716 I
e anoCar2.chr1                 148577473 4 + 263920458 I
e pseHum1.KB221275               1873508 7837 +   2017280 I
e zonAlb1.KB913045              12582000 6532 +  16390125 T
e colLiv1.KB375822               2439586 31 +   2691611 I
e allMis1.JH739658                 38113 134 -    691381 I
e falPer1.KB390952               2753956 0 -  18327016 I
e falChe1.KB397350               1707310 0 -   3649919 I
e macEug2.GL124958                 26121 0 -     59456 I
e geoFor1.JH740049                182925 1 -   1550430 I
e melGal1.chr7                  34310641 0 -  38723565 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e apaSpi1.KB929104                 22324 0 +    818693 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1        105736 1 +    779542 I
e melUnd1.JH556573                751858 2 +  10614383 I
e taeGut2.chr10                 17657297 0 -  20806668 I
e rheMac3.chr8                  61690256 4519 + 150158102 T
e macFas5.chr8                  88455156 0 - 146850525 I
e chlSab2.chr8                  53284695 4759 + 139301422 T

a score=4491.000000
s hg38.chr8_KI270814v1_alt      114467 2 +    141812 CA
s panTro4.chr8                55016958 2 + 143986469 CA
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59083969 2 + 153482349 CA
i ponAbe2.chr8               C 0 I 73570
s geoFor1.JH740049              182926 1 -   1550430 -A
i geoFor1.JH740049           I 1 C 0
s amaVit1.KB277496                3891 2 -     10329 CG
i amaVit1.KB277496           C 0 C 0
s galGal4.chrUn_AADN03023623      1971 2 -      5081 CG
i galGal4.chrUn_AADN03023623 C 0 C 0
s pelSin1.JH211051               23300 2 +    476004 gg
i pelSin1.JH211051           C 0 C 0
s xenTro7.KB021650            39350172 2 - 150913983 TA
i xenTro7.KB021650           I 2 C 0
s fr3.chr10                    9064388 2 +   9126174 CA
i fr3.chr10                  C 0 C 0
s takFla1.KE121866              209607 2 +    220559 CA
i takFla1.KE121866           C 0 C 0
s oryLat2.ultracontig146          4507 2 -    113228 CA
i oryLat2.ultracontig146     C 0 C 0
s petMar2.GL478800               10954 2 +    213094 CA
i petMar2.GL478800           C 0 C 0
e danRer10.chr19              48218196 5198 -  48790377 I
e ornAna1.Contig1391            115132 0 -    174025 I
e tetNig2.chr10                6379385 0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382 0 -   6649201 I
e hapBur1.JH425491              252157 0 -   1273513 I
e neoBri1.JH422308             3491820 0 -   5414369 I
e araMac1.AOUJ01470298             637 0 -       895 I
e ficAlb2.chr4A               19371809 0 +  21182716 I
e anoCar2.chr1               148577473 4 + 263920458 I
e pseHum1.KB221275             1873508 7837 +   2017280 I
e zonAlb1.KB913045            12582000 6532 +  16390125 T
e colLiv1.KB375822             2439586 31 +   2691611 I
e allMis1.JH739658               38113 134 -    691381 I
e falPer1.KB390952             2753956 0 -  18327016 I
e falChe1.KB397350             1707310 0 -   3649919 I
e macEug2.GL124958               26121 0 -     59456 I
e melGal1.chr7                34310641 0 -  38723565 I
e anaPla1.KB742696             1254472 0 -   1270250 I
e apaSpi1.KB929104               22324 0 +    818693 I
e cheMyd1.KB605988              134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1      105736 1 +    779542 I
e melUnd1.JH556573              751858 2 +  10614383 I
e taeGut2.chr10               17657297 0 -  20806668 I
e rheMac3.chr8                61690256 4519 + 150158102 T
e macFas5.chr8                88455156 0 - 146850525 I
e chlSab2.chr8                53284695 4759 + 139301422 T

a score=1778.000000
s hg38.chr8_KI270814v1_alt      114469 1 +    141812 G
s panTro4.chr8                55016960 1 + 143986469 G
i panTro4.chr8               C 0 C 0
s geoFor1.JH740049              182927 1 -   1550430 A
i geoFor1.JH740049           C 0 C 0
s amaVit1.KB277496                3893 1 -     10329 A
i amaVit1.KB277496           C 0 C 0
s galGal4.chrUn_AADN03023623      1973 1 -      5081 A
i galGal4.chrUn_AADN03023623 C 0 C 0
s pelSin1.JH211051               23302 1 +    476004 a
i pelSin1.JH211051           C 0 n 0
s xenTro7.KB021650            39350174 1 - 150913983 G
i xenTro7.KB021650           C 0 C 0
s fr3.chr10                    9064390 1 +   9126174 G
i fr3.chr10                  C 0 I 3
s takFla1.KE121866              209609 1 +    220559 G
i takFla1.KE121866           C 0 I 3
s oryLat2.ultracontig146          4509 1 -    113228 G
i oryLat2.ultracontig146     C 0 I 3
s petMar2.GL478800               10956 1 +    213094 G
i petMar2.GL478800           C 0 C 0
e danRer10.chr19              48218196 5198 -  48790377 I
e ornAna1.Contig1391            115132 0 -    174025 I
e tetNig2.chr10                6379385 0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382 0 -   6649201 I
e hapBur1.JH425491              252157 0 -   1273513 I
e neoBri1.JH422308             3491820 0 -   5414369 I
e araMac1.AOUJ01470298             637 0 -       895 I
e ficAlb2.chr4A               19371809 0 +  21182716 I
e anoCar2.chr1               148577473 4 + 263920458 I
e pseHum1.KB221275             1873508 7837 +   2017280 I
e zonAlb1.KB913045            12582000 6532 +  16390125 T
e colLiv1.KB375822             2439586 31 +   2691611 I
e allMis1.JH739658               38113 134 -    691381 I
e falPer1.KB390952             2753956 0 -  18327016 I
e falChe1.KB397350             1707310 0 -   3649919 I
e macEug2.GL124958               26121 0 -     59456 I
e melGal1.chr7                34310641 0 -  38723565 I
e anaPla1.KB742696             1254472 0 -   1270250 I
e apaSpi1.KB929104               22324 0 +    818693 I
e cheMyd1.KB605988              134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1      105736 1 +    779542 I
e melUnd1.JH556573              751858 2 +  10614383 I
e taeGut2.chr10               17657297 0 -  20806668 I
e rheMac3.chr8                61690256 4519 + 150158102 T
e macFas5.chr8                88455156 0 - 146850525 I
e chlSab2.chr8                53284695 4759 + 139301422 T
e ponAbe2.chr8                59083971 73570 + 153482349 I

a score=657.000000
s hg38.chr8_KI270814v1_alt      114470 2 +    141812 TG
s panTro4.chr8                55016961 2 + 143986469 TG
i panTro4.chr8               C 0 C 0
s geoFor1.JH740049              182928 2 -   1550430 AA
i geoFor1.JH740049           C 0 n 0
s amaVit1.KB277496                3894 2 -     10329 AG
i amaVit1.KB277496           C 0 I 3
s galGal4.chrUn_AADN03023623      1974 2 -      5081 TG
i galGal4.chrUn_AADN03023623 C 0 C 0
s xenTro7.KB021650            39350175 2 - 150913983 AG
i xenTro7.KB021650           C 0 I 2
s petMar2.GL478800               10957 2 +    213094 TG
i petMar2.GL478800           C 0 I 8
e danRer10.chr19              48218196 5198 -  48790377 I
e ornAna1.Contig1391            115132 0 -    174025 I
e tetNig2.chr10                6379385 0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382 0 -   6649201 I
e hapBur1.JH425491              252157 0 -   1273513 I
e neoBri1.JH422308             3491820 0 -   5414369 I
e araMac1.AOUJ01470298             637 0 -       895 I
e oryLat2.ultracontig146          4510 3 -    113228 I
e takFla1.KE121866              209610 3 +    220559 I
e fr3.chr10                    9064391 3 +   9126174 I
e ficAlb2.chr4A               19371809 0 +  21182716 I
e anoCar2.chr1               148577473 4 + 263920458 I
e pseHum1.KB221275             1873508 7837 +   2017280 I
e zonAlb1.KB913045            12582000 6532 +  16390125 T
e colLiv1.KB375822             2439586 31 +   2691611 I
e allMis1.JH739658               38113 134 -    691381 I
e falPer1.KB390952             2753956 0 -  18327016 I
e falChe1.KB397350             1707310 0 -   3649919 I
e macEug2.GL124958               26121 0 -     59456 I
e melGal1.chr7                34310641 0 -  38723565 I
e anaPla1.KB742696             1254472 0 -   1270250 I
e apaSpi1.KB929104               22324 0 +    818693 I
e cheMyd1.KB605988              134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1      105736 1 +    779542 I
e pelSin1.JH211051               23303 0 +    476004 I
e melUnd1.JH556573              751858 2 +  10614383 I
e taeGut2.chr10               17657297 0 -  20806668 I
e rheMac3.chr8                61690256 4519 + 150158102 T
e macFas5.chr8                88455156 0 - 146850525 I
e chlSab2.chr8                53284695 4759 + 139301422 T
e ponAbe2.chr8                59083971 73570 + 153482349 I

a score=-6386.000000
s hg38.chr8_KI270814v1_alt      114472 3 +    141812 --GGG
s panTro4.chr8                55016963 3 + 143986469 --GGG
i panTro4.chr8               C 0 C 0
s amaVit1.KB277496                3899 3 -     10329 --GGG
i amaVit1.KB277496           I 3 C 0
s galGal4.chrUn_AADN03023623      1976 3 -      5081 --GGG
i galGal4.chrUn_AADN03023623 C 0 C 0
s xenTro7.KB021650            39350179 1 - 150913983 --G--
i xenTro7.KB021650           I 2 C 0
s fr3.chr10                    9064394 2 +   9126174 --GG-
i fr3.chr10                  I 3 C 0
s takFla1.KE121866              209613 2 +    220559 --GG-
i takFla1.KE121866           I 3 C 0
s oryLat2.ultracontig146          4513 2 -    113228 --GA-
i oryLat2.ultracontig146     I 3 C 0
s petMar2.GL478800               10967 3 +    213094 GAG--
i petMar2.GL478800           I 8 C 0
e danRer10.chr19              48218196 5198 -  48790377 I
e ornAna1.Contig1391            115132 0 -    174025 I
e tetNig2.chr10                6379385 0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382 0 -   6649201 I
e hapBur1.JH425491              252157 0 -   1273513 I
e neoBri1.JH422308             3491820 0 -   5414369 I
e araMac1.AOUJ01470298             637 0 -       895 I
e ficAlb2.chr4A               19371809 0 +  21182716 I
e anoCar2.chr1               148577473 4 + 263920458 I
e pseHum1.KB221275             1873508 7837 +   2017280 I
e zonAlb1.KB913045            12582000 6532 +  16390125 T
e colLiv1.KB375822             2439586 31 +   2691611 I
e allMis1.JH739658               38113 134 -    691381 I
e falPer1.KB390952             2753956 0 -  18327016 I
e falChe1.KB397350             1707310 0 -   3649919 I
e macEug2.GL124958               26121 0 -     59456 I
e geoFor1.JH740049              182930 0 -   1550430 I
e melGal1.chr7                34310641 0 -  38723565 I
e anaPla1.KB742696             1254472 0 -   1270250 I
e apaSpi1.KB929104               22324 0 +    818693 I
e cheMyd1.KB605988              134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1      105736 1 +    779542 I
e pelSin1.JH211051               23303 0 +    476004 I
e melUnd1.JH556573              751858 2 +  10614383 I
e taeGut2.chr10               17657297 0 -  20806668 I
e rheMac3.chr8                61690256 4519 + 150158102 T
e macFas5.chr8                88455156 0 - 146850525 I
e chlSab2.chr8                53284695 4759 + 139301422 T
e ponAbe2.chr8                59083971 73570 + 153482349 I

a score=-33317.000000
s hg38.chr8_KI270814v1_alt      114475 33 +    141812 TTACA-----------ATGGCATAGCATTG----CCC----------CAA---CCCCCAAA
s panTro4.chr8                55016966 33 + 143986469 TTACA-----------ATGGCATAGCATTG----CCC----------CAA---CCCGCAAA
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59157541 33 + 153482349 TTACA-----------ATGGCGTAGCAGTG----CCC----------CAA---CCCCCAAA
i ponAbe2.chr8               I 73570 C 0
s amaVit1.KB277496                3902 33 -     10329 TTACA-----------GTGCCACAGCTGTG----CCA----------CCA---CAGCCAGA
i amaVit1.KB277496           C 0 M 1584
s galGal4.chrUn_AADN03023623      1979 26 -      5081 TT---------------TTCCATCCCCAAC----CCA----------TTA---CCAAC---
i galGal4.chrUn_AADN03023623 C 0 C 0
s xenTro7.KB021650            39350180 44 - 150913983 CTACAGCCTCTTAGAGGTGGATTAGAGATG----CTA----------CAG---CCTCTTAG
i xenTro7.KB021650           C 0 C 0
s fr3.chr10                    9064396 38 +   9126174 ------CCATGGCTGAGCTGCACATTAATC----TCT----------TTA---CTCTTAAA
i fr3.chr10                  C 0 C 0
s takFla1.KE121866              209615 38 +    220559 ------CCATGGCTGAGCTGCACATTAATC----TCT----------TTA---CTCTTAAA
i takFla1.KE121866           C 0 C 0
s oryLat2.ultracontig146          4515 49 -    113228 ------C---AGAGGAGCAGTACTCTGTTTACAGTCTGACGGCACAGTTA---CATTCAAA
i oryLat2.ultracontig146     C 0 C 0
s petMar2.GL478800               10970 39 +    213094 --------TCACCCAGAGGGGACAGTGACC----CTA----------CTGAGTCACCCAGA
i petMar2.GL478800           C 0 C 0
e danRer10.chr19              48218196 5198 -  48790377 I
e ornAna1.Contig1391            115132  0 -    174025 I
e tetNig2.chr10                6379385  0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382  0 -   6649201 I
e hapBur1.JH425491              252157  0 -   1273513 I
e neoBri1.JH422308             3491820  0 -   5414369 I
e araMac1.AOUJ01470298             637  0 -       895 I
e ficAlb2.chr4A               19371809  0 +  21182716 I
e anoCar2.chr1               148577473  4 + 263920458 I
e pseHum1.KB221275             1873508 7837 +   2017280 I
e zonAlb1.KB913045            12582000 6532 +  16390125 T
e colLiv1.KB375822             2439586 31 +   2691611 I
e allMis1.JH739658               38113 134 -    691381 I
e falPer1.KB390952             2753956  0 -  18327016 I
e falChe1.KB397350             1707310  0 -   3649919 I
e macEug2.GL124958               26121  0 -     59456 I
e geoFor1.JH740049              182930  0 -   1550430 I
e melGal1.chr7                34310641  0 -  38723565 I
e anaPla1.KB742696             1254472  0 -   1270250 I
e apaSpi1.KB929104               22324  0 +    818693 I
e cheMyd1.KB605988              134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1      105736  1 +    779542 I
e pelSin1.JH211051               23303  0 +    476004 I
e melUnd1.JH556573              751858  2 +  10614383 I
e taeGut2.chr10               17657297  0 -  20806668 I
e rheMac3.chr8                61690256 4519 + 150158102 T
e macFas5.chr8                88455156  0 - 146850525 I
e chlSab2.chr8                53284695 4759 + 139301422 T

a score=3279.000000
s hg38.chr8_KI270814v1_alt      114508 2 +    141812 AG
s panTro4.chr8                55016999 2 + 143986469 AG
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59157574 2 + 153482349 AG
i ponAbe2.chr8               C 0 C 0
s galGal4.chrUn_AADN03023623      2005 2 -      5081 AG
i galGal4.chrUn_AADN03023623 C 0 C 0
s xenTro7.KB021650            39350224 2 - 150913983 AG
i xenTro7.KB021650           C 0 N 0
s oryLat2.ultracontig146          4564 2 -    113228 AG
i oryLat2.ultracontig146     C 0 I 1
s petMar2.GL478800               11009 2 +    213094 GG
i petMar2.GL478800           C 0 C 0
e danRer10.chr19              48218196 5198 -  48790377 I
e ornAna1.Contig1391            115132 0 -    174025 I
e tetNig2.chr10                6379385 0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382 0 -   6649201 I
e hapBur1.JH425491              252157 0 -   1273513 I
e neoBri1.JH422308             3491820 0 -   5414369 I
e araMac1.AOUJ01470298             637 0 -       895 I
e takFla1.KE121866              209653 0 +    220559 C
e fr3.chr10                    9064434 0 +   9126174 C
e ficAlb2.chr4A               19371809 0 +  21182716 I
e anoCar2.chr1               148577473 4 + 263920458 I
e pseHum1.KB221275             1873508 7837 +   2017280 I
e zonAlb1.KB913045            12582000 6532 +  16390125 T
e colLiv1.KB375822             2439586 31 +   2691611 I
e allMis1.JH739658               38113 134 -    691381 I
e falPer1.KB390952             2753956 0 -  18327016 I
e falChe1.KB397350             1707310 0 -   3649919 I
e macEug2.GL124958               26121 0 -     59456 I
e geoFor1.JH740049              182930 0 -   1550430 I
e melGal1.chr7                34310641 0 -  38723565 I
e anaPla1.KB742696             1254472 0 -   1270250 I
e amaVit1.KB277496                3935 1584 -     10329 M
e apaSpi1.KB929104               22324 0 +    818693 I
e cheMyd1.KB605988              134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1      105736 1 +    779542 I
e pelSin1.JH211051               23303 0 +    476004 I
e melUnd1.JH556573              751858 2 +  10614383 I
e taeGut2.chr10               17657297 0 -  20806668 I
e rheMac3.chr8                61690256 4519 + 150158102 T
e macFas5.chr8                88455156 0 - 146850525 I
e chlSab2.chr8                53284695 4759 + 139301422 T

a score=-2289.000000
s hg38.chr8_KI270814v1_alt      114510 3 +    141812 --AAA
s panTro4.chr8                55017001 3 + 143986469 --AAA
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59157576 3 + 153482349 --AAA
i ponAbe2.chr8               C 0 C 0
s galGal4.chrUn_AADN03023623      2007 3 -      5081 --ACA
i galGal4.chrUn_AADN03023623 C 0 C 0
s oryLat2.ultracontig146          4567 2 -    113228 --AA-
i oryLat2.ultracontig146     I 1 N 0
s petMar2.GL478800               11011 3 +    213094 GGA--
i petMar2.GL478800           C 0 C 0
e danRer10.chr19              48218196 5198 -  48790377 I
e ornAna1.Contig1391            115132 0 -    174025 I
e tetNig2.chr10                6379385 0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382 0 -   6649201 I
e hapBur1.JH425491              252157 0 -   1273513 I
e neoBri1.JH422308             3491820 0 -   5414369 I
e araMac1.AOUJ01470298             637 0 -       895 I
e takFla1.KE121866              209653 0 +    220559 C
e fr3.chr10                    9064434 0 +   9126174 C
e ficAlb2.chr4A               19371809 0 +  21182716 I
e anoCar2.chr1               148577473 4 + 263920458 I
e pseHum1.KB221275             1873508 7837 +   2017280 I
e zonAlb1.KB913045            12582000 6532 +  16390125 T
e colLiv1.KB375822             2439586 31 +   2691611 I
e allMis1.JH739658               38113 134 -    691381 I
e falPer1.KB390952             2753956 0 -  18327016 I
e falChe1.KB397350             1707310 0 -   3649919 I
e macEug2.GL124958               26121 0 -     59456 I
e geoFor1.JH740049              182930 0 -   1550430 I
e melGal1.chr7                34310641 0 -  38723565 I
e anaPla1.KB742696             1254472 0 -   1270250 I
e amaVit1.KB277496                3935 1584 -     10329 M
e apaSpi1.KB929104               22324 0 +    818693 I
e cheMyd1.KB605988              134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1      105736 1 +    779542 I
e pelSin1.JH211051               23303 0 +    476004 I
e melUnd1.JH556573              751858 2 +  10614383 I
e taeGut2.chr10               17657297 0 -  20806668 I
e rheMac3.chr8                61690256 4519 + 150158102 T
e macFas5.chr8                88455156 0 - 146850525 I
e chlSab2.chr8                53284695 4759 + 139301422 T

a score=474.000000
s hg38.chr8_KI270814v1_alt      114513 1 +    141812 T
s panTro4.chr8                55017004 1 + 143986469 T
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59157579 1 + 153482349 T
i ponAbe2.chr8               C 0 C 0
s galGal4.chrUn_AADN03023623      2010 1 -      5081 T
i galGal4.chrUn_AADN03023623 C 0 n 0
s fr3.chr10                    9064434 1 +   9126174 C
i fr3.chr10                  C 0 C 0
s takFla1.KE121866              209653 1 +    220559 C
i takFla1.KE121866           C 0 C 0
s petMar2.GL478800               11014 1 +    213094 C
i petMar2.GL478800           C 0 C 0
e danRer10.chr19              48218196 5198 -  48790377 I
e ornAna1.Contig1391            115132 0 -    174025 I
e tetNig2.chr10                6379385 0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382 0 -   6649201 I
e hapBur1.JH425491              252157 0 -   1273513 I
e neoBri1.JH422308             3491820 0 -   5414369 I
e araMac1.AOUJ01470298             637 0 -       895 I
e ficAlb2.chr4A               19371809 0 +  21182716 I
e anoCar2.chr1               148577473 4 + 263920458 I
e pseHum1.KB221275             1873508 7837 +   2017280 I
e zonAlb1.KB913045            12582000 6532 +  16390125 T
e colLiv1.KB375822             2439586 31 +   2691611 I
e allMis1.JH739658               38113 134 -    691381 I
e falPer1.KB390952             2753956 0 -  18327016 I
e falChe1.KB397350             1707310 0 -   3649919 I
e macEug2.GL124958               26121 0 -     59456 I
e geoFor1.JH740049              182930 0 -   1550430 I
e melGal1.chr7                34310641 0 -  38723565 I
e anaPla1.KB742696             1254472 0 -   1270250 I
e amaVit1.KB277496                3935 1584 -     10329 M
e apaSpi1.KB929104               22324 0 +    818693 I
e cheMyd1.KB605988              134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1      105736 1 +    779542 I
e pelSin1.JH211051               23303 0 +    476004 I
e melUnd1.JH556573              751858 2 +  10614383 I
e taeGut2.chr10               17657297 0 -  20806668 I
e rheMac3.chr8                61690256 4519 + 150158102 T
e macFas5.chr8                88455156 0 - 146850525 I
e chlSab2.chr8                53284695 4759 + 139301422 T

a score=2753.000000
s hg38.chr8_KI270814v1_alt      114514 6 +    141812 AGTATC
s panTro4.chr8                55017005 6 + 143986469 AGTATC
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59157580 6 + 153482349 AGTATG
i ponAbe2.chr8               C 0 C 0
s fr3.chr10                    9064435 6 +   9126174 ACTTTC
i fr3.chr10                  C 0 C 0
s takFla1.KE121866              209654 6 +    220559 ACTTTC
i takFla1.KE121866           C 0 C 0
s petMar2.GL478800               11015 6 +    213094 AGTAAC
i petMar2.GL478800           C 0 N 0
e danRer10.chr19              48218196 5198 -  48790377 I
e ornAna1.Contig1391            115132 0 -    174025 I
e tetNig2.chr10                6379385 0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382 0 -   6649201 I
e hapBur1.JH425491              252157 0 -   1273513 I
e neoBri1.JH422308             3491820 0 -   5414369 I
e araMac1.AOUJ01470298             637 0 -       895 I
e ficAlb2.chr4A               19371809 0 +  21182716 I
e anoCar2.chr1               148577473 4 + 263920458 I
e pseHum1.KB221275             1873508 7837 +   2017280 I
e zonAlb1.KB913045            12582000 6532 +  16390125 T
e colLiv1.KB375822             2439586 31 +   2691611 I
e allMis1.JH739658               38113 134 -    691381 I
e falPer1.KB390952             2753956 0 -  18327016 I
e falChe1.KB397350             1707310 0 -   3649919 I
e macEug2.GL124958               26121 0 -     59456 I
e galGal4.chrUn_AADN03023623      2011 0 -      5081 I
e geoFor1.JH740049              182930 0 -   1550430 I
e melGal1.chr7                34310641 0 -  38723565 I
e anaPla1.KB742696             1254472 0 -   1270250 I
e amaVit1.KB277496                3935 1584 -     10329 M
e apaSpi1.KB929104               22324 0 +    818693 I
e cheMyd1.KB605988              134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1      105736 1 +    779542 I
e pelSin1.JH211051               23303 0 +    476004 I
e melUnd1.JH556573              751858 2 +  10614383 I
e taeGut2.chr10               17657297 0 -  20806668 I
e rheMac3.chr8                61690256 4519 + 150158102 T
e macFas5.chr8                88455156 0 - 146850525 I
e chlSab2.chr8                53284695 4759 + 139301422 T

a score=26332.000000
s hg38.chr8_KI270814v1_alt      114520 79 +    141812 GAAGTCCAATGTAAACCTATTAATTACGTGGCTGTGCTACAATCAAAACAT------AGATCTCTGACGTCAGCCTTATTGTTCT
s panTro4.chr8                55017011 79 + 143986469 GAAGTCCAATGTAAACCTATTAATTACGTGGCTGTGCTACAATCAAAACAT------AGATCTCTGACGTCAGCCTTATTGTTCT
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59157586 77 + 153482349 GAAGTCCGATGTAAACCTATTAACTACGTGGCTGTGCTACAATCAAAACAT------AGA--TCTGGTGTCAGCCTTATTGTTCT
i ponAbe2.chr8               C 0 C 0
s fr3.chr10                    9064441 71 +   9126174 AAAGGTGTTTGGAAAC------------TGG--GGAGAACATTCAGAGAATGACATGAGATGTTTGATGTCGTCGTTTTTGCTTT
i fr3.chr10                  C 0 n 0
s takFla1.KE121866              209660 71 +    220559 AAAGGTGTTTGGAAAC------------TGG--GGAGAACATTCAGAGAATGACATGAGATGTTTGATGTCGTCGTTTTTGCTTT
i takFla1.KE121866           C 0 n 0
e danRer10.chr19              48218196 5198 -  48790377 I
e ornAna1.Contig1391            115132  0 -    174025 I
e tetNig2.chr10                6379385  0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382  0 -   6649201 I
e hapBur1.JH425491              252157  0 -   1273513 I
e neoBri1.JH422308             3491820  0 -   5414369 I
e araMac1.AOUJ01470298             637  0 -       895 I
e ficAlb2.chr4A               19371809  0 +  21182716 I
e anoCar2.chr1               148577473  4 + 263920458 I
e pseHum1.KB221275             1873508 7837 +   2017280 I
e zonAlb1.KB913045            12582000 6532 +  16390125 T
e colLiv1.KB375822             2439586 31 +   2691611 I
e allMis1.JH739658               38113 134 -    691381 I
e falPer1.KB390952             2753956  0 -  18327016 I
e falChe1.KB397350             1707310  0 -   3649919 I
e macEug2.GL124958               26121  0 -     59456 I
e galGal4.chrUn_AADN03023623      2011  0 -      5081 I
e geoFor1.JH740049              182930  0 -   1550430 I
e melGal1.chr7                34310641  0 -  38723565 I
e anaPla1.KB742696             1254472  0 -   1270250 I
e amaVit1.KB277496                3935 1584 -     10329 M
e apaSpi1.KB929104               22324  0 +    818693 I
e cheMyd1.KB605988              134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1      105736  1 +    779542 I
e pelSin1.JH211051               23303  0 +    476004 I
e melUnd1.JH556573              751858  2 +  10614383 I
e taeGut2.chr10               17657297  0 -  20806668 I
e rheMac3.chr8                61690256 4519 + 150158102 T
e macFas5.chr8                88455156  0 - 146850525 I
e chlSab2.chr8                53284695 4759 + 139301422 T

a score=226872.000000
s hg38.chr8_KI270814v1_alt      114599 852 +    141812 TCATTGTGTTGATCAAGGTAAGCATGTGCTTTCATCTTTAGTTAAGAGATTCATGAGTATAGGACACAGCTTAGTGTTTAAGTCTTTTGAGTCTTAGACAAGGAATTTCCAACTATAAATGAAGCCATACTAAAACATAAATGGCAGAGGTTTCTGGGTATCCTCGGTGTccaaagtgactgtcagcaagtttattcatgttctgtctctctcttcctatagaagtgccctagccctcaagtcctcctcactcgaagcctatggactcctaatttgcacacaagtctaacaagccacatcatcttgtttttcagttcatagcaCTGTGAAACAGGAGACATTAGAGGCAAGCATTGATAGCAGTAAAAAGGGCAACCACTAGGAAAGAGTCAGAATATTAACAAACAAATGTCAGAAATGGAAGTCAAATAGTCCAGGACTAATCTAAGGGCAGATATTACCATATACAATAAGCCATTGGGATGTCTCTAGATTTCAGCATAGTTCATTAGTTTATGCCCAAAACAGTGACTTAAATCTTCCTCCCAAAAAGATGAACTTGTGATTATTGTTCAATATAAAATGTAATACATTAAAAAATATAAGACttttttttgagacagagtctcactctgtcgccaaggctgaagtgcaatggtgagatctcggcttactgcaacttccccctcctgggttcaagcaattctcctgtctcagcctcccaagtagctgggtttacaggtgcccaccaccacaaccggctaattttttgtatttttagtagagatggggtttcaccatgttggccaggctggtctcaaactcctgacctcagatgatccacctgcctcg
s panTro4.chr8                55017090 852 + 143986469 TCATTGTGTTGATCAAGGTAAGCATGTGCTTTCATCTTTAGTTAAGAGATTCATGAGTATAGGACACAGCTTAGTGTTTAAGTCTTTTGAGTCTTAGACAAGGAATTTCCAACTATAAATGAAGCCATACTAAAACATAAATGGCAGAGGTTTCTGGGTATCCTCGGTGTCCAAAGTGACTGTCAGCAAGTTTATTCATGTTCTGTCTCTCTCTTCCTATAGAAGTGCCCTAGccctcaagtcctcctcactcgaagcctatggactcctaatttgcacacaagtctaacaagccacatcatcttgtttttcagttcacagcactgtgaaacaggagaaattagaggcaagcattgatagcagtaaaaagGGCAACCATTAGGAAAGAGTCAGAATATTAACAAACAACTGTCAGAAATGGAAGTCAAATAGTCCAGGACTAATCTAAGGGCAGATATTACCATATACAATAAGCCATTGGGATGTCTCTAGATTTCAGCATAGTTCATTAGTTTATGCCCAAAACAGTGACTTAAATCTTCCTCCCAAAAAGATGAACTTGTGATTATTGTTCAATATAAAATGTAATACATTAAAAAATATAAGACttttttttgagacagagtctcactctgtcaccaaggctggagtgcaatggtgagatctcggcttactgcaacttccccctcctagattcaagcaattcttctgtctcagcctcccaagtagctgggattacaggtgcccaccaccacgcctggctaattttttgtatttttagtagagatggggtttcaccatgttggccaggctggtctcaaactcctgacctcagatgatccacctgcctcg
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59157663 851 + 153482349 TCATTGTGTTGATCAAGCTAAGCATGTGCTTTCATCTTTAGTT-AGAGATTCATGAGCATAGGACATAGCTTAGTGTTTAAGTCTTTTGAGTCTTAGACAAGGAATTTCCACCTATAAATGAAGTCATACTAAAACATAAGTGGCAGAGGTTTCTGGGTGTCCTGGGTGTCCAAAGTGACTGTCAGCAAATTTATTCATGTTCTGTCTCTCTCTTCCAATAGAAGTGCCCTAGccctcaagtcctccttactagaagcctatggactcctaatttgcacacaagtctaacaagccatgtcatcttgctttgcagttcatagcactgtgaaacaggagacattagaggcaagcattgatagcagtaaaaagGGCAACCATTATGAAAGAGGCAGAATATTAACAAGCAAATGTCAGAAATGGAAGTCAAATAGTCCAGGACTAATTTAAGGGCAGATATTACCGTATACAATAAGCCATTGGGATGTCTCTAGATTTCAGCATAGTTCATTAGTTTATGCCCAAAACAGTGACTTAAATCTTCCCTCCAAAAAGATGAACTTGTGATTATTGTTCAATATAAAATGTAATACATTAAAAAATATAAGACttttttttgagacagagtcttactctgtcgccaaggctggagtgcaatggtacgatctcggcttactgcaacatccctctcctgggttcaagcaattctcctgtctcagcctcccaagtagctgggattgcaggtgcccaccaccacacctagctaattttttgtatttttagtagagacggggtttcaccatgttggccaggctggtttcaaactcctgacctcagatgatccacctgcctca
i ponAbe2.chr8               C 0 C 0
e danRer10.chr19              48218196 5198 -  48790377 I
e ornAna1.Contig1391            115132   0 -    174025 I
e tetNig2.chr10                6379385   0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382   0 -   6649201 I
e hapBur1.JH425491              252157   0 -   1273513 I
e neoBri1.JH422308             3491820   0 -   5414369 I
e araMac1.AOUJ01470298             637   0 -       895 I
e takFla1.KE121866              209731   0 +    220559 I
e fr3.chr10                    9064512   0 +   9126174 I
e ficAlb2.chr4A               19371809   0 +  21182716 I
e anoCar2.chr1               148577473   4 + 263920458 I
e pseHum1.KB221275             1873508 7837 +   2017280 I
e zonAlb1.KB913045            12582000 6532 +  16390125 T
e colLiv1.KB375822             2439586  31 +   2691611 I
e allMis1.JH739658               38113 134 -    691381 I
e falPer1.KB390952             2753956   0 -  18327016 I
e falChe1.KB397350             1707310   0 -   3649919 I
e macEug2.GL124958               26121   0 -     59456 I
e galGal4.chrUn_AADN03023623      2011   0 -      5081 I
e geoFor1.JH740049              182930   0 -   1550430 I
e melGal1.chr7                34310641   0 -  38723565 I
e anaPla1.KB742696             1254472   0 -   1270250 I
e amaVit1.KB277496                3935 1584 -     10329 M
e apaSpi1.KB929104               22324   0 +    818693 I
e cheMyd1.KB605988              134509   0 +    155857 I
e chrPic2.chrUn_KK083223v1      105736   1 +    779542 I
e pelSin1.JH211051               23303   0 +    476004 I
e melUnd1.JH556573              751858   2 +  10614383 I
e taeGut2.chr10               17657297   0 -  20806668 I
e rheMac3.chr8                61690256 4519 + 150158102 T
e macFas5.chr8                88455156   0 - 146850525 I
e chlSab2.chr8                53284695 4759 + 139301422 T

a score=1000.000000
s hg38.chr8_KI270814v1_alt      115451 1 +    141812 g
s panTro4.chr8                55017942 1 + 143986469 g
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59158514 1 + 153482349 g
i ponAbe2.chr8               C 0 C 0
s rheMac3.chr8                61685737 1 + 150158102 g
i rheMac3.chr8               T 4519 C 0
s macFas5.chr8                58359642 1 + 146850525 g
i macFas5.chr8               T 2669 C 0
e danRer10.chr19              48218196 5198 -  48790377 I
e ornAna1.Contig1391            115132 0 -    174025 I
e tetNig2.chr10                6379385 0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382 0 -   6649201 I
e hapBur1.JH425491              252157 0 -   1273513 I
e neoBri1.JH422308             3491820 0 -   5414369 I
e araMac1.AOUJ01470298             637 0 -       895 I
e takFla1.KE121866              209731 0 +    220559 I
e fr3.chr10                    9064512 0 +   9126174 I
e ficAlb2.chr4A               19371809 0 +  21182716 I
e anoCar2.chr1               148577473 4 + 263920458 I
e pseHum1.KB221275             1873508 7837 +   2017280 I
e zonAlb1.KB913045            12582000 6532 +  16390125 T
e colLiv1.KB375822             2439586 31 +   2691611 I
e allMis1.JH739658               38113 134 -    691381 I
e falPer1.KB390952             2753956 0 -  18327016 I
e falChe1.KB397350             1707310 0 -   3649919 I
e macEug2.GL124958               26121 0 -     59456 I
e galGal4.chrUn_AADN03023623      2011 0 -      5081 I
e geoFor1.JH740049              182930 0 -   1550430 I
e melGal1.chr7                34310641 0 -  38723565 I
e anaPla1.KB742696             1254472 0 -   1270250 I
e amaVit1.KB277496                3935 1584 -     10329 M
e apaSpi1.KB929104               22324 0 +    818693 I
e cheMyd1.KB605988              134509 0 +    155857 I
e chrPic2.chrUn_KK083223v1      105736 1 +    779542 I
e pelSin1.JH211051               23303 0 +    476004 I
e melUnd1.JH556573              751858 2 +  10614383 I
e taeGut2.chr10               17657297 0 -  20806668 I
e chlSab2.chr8                53284695 4759 + 139301422 T

a score=728448.000000
s hg38.chr8_KI270814v1_alt      115452 602 +    141812 cctcccaaagtgctgggattacagccgtgagcccccgcgcctggcTCGGTGCAGCTGCCAGTATGGGGCTGAATGGCCTTTTATTAAAAATGTAAGACATTTTAAATAAAAGAAGTTA----AAAAGTCTGTGGAAGTATTGAGGGTGAGAATCTCTGCTAGCTAGATCTCTATATTAAGTGATGAGATAAGCTTTATTAAAAATGAGAATCAGTTCATACTTAACCTAAGCCTGACAGTGCTGGGCAGAGAGTCCTGCTGTACCACTACCAATGGAGCCAGGCAAGGATGCCTCTCTGCTAGACACAGCACATATGGACAAAGCCACAAGCTATGGCTCATCCCAATAGAATCTTACTAGTTCCCTGGTAAGGTTAGCTATAATGTCTTCTAACTCACATCATTTGCATT-----AAAAAAAGAAAGAAACAGATGATGACTGATACACATGTTGGTTGGTAGAGCTTTCAGGTTCCTCTTTCCATGTAGTTGAGGAAATTCCTCAGCCCATTGTCACCTCGGATCTCATGCTGCAACTCCATCCTTAGCTCAACACCCACTGGCCCCTGCTTTCAAACTGTTGCTGGTCTTCAGGTAGAGCAGGTTCTG
s panTro4.chr8                55017943 602 + 143986469 cctcccaaagtgctgggattacagctgtgagcccccacacctggcTCGGTGCAGCTGCCAGTATGGGGCTGGATGGTCTTTTATTAAAAATATAAGACATTTTTAATAAAAGAAGTTA----AAAAGTCTGTGGAAGTATTGAGGGTGAGAATCTCTGCTAGCTAGATCTCTATATTAAGTGATGAGATAAGCTTTATTAAAAATGAGAATCAGTTCATACTTAACCTAAGCCTGACAGTGCTGGGCAGAGAGTCTTGCTGTACCACTACCAGTGGAGCCAGGCAAGGATGCCTCTCTGCTAGACACAGCACATATGGACAAAGCCACAAGCTATGGGTCATCCCAATAGAATCTTACTAGTTCCCTGGTAAGGTTAGCTATAATGTCTTCTAACTCACATCATTTGTATT-----AAAAAAAGAAAGAAACAGATGATGACTGATACACATGTTGGTTGGTAGAGCTTTCAGGTTCCTCTTTCCATGTAGTTGAGGAAATTCCTCAGCCCATTGTCACCTCGGATCTCATGCTGCAACTCCATCCTTAGCTCAACACCCACTGGCCCCTGCTTTCAAACGGTTGCTGGTCTTCAGGTAGAGCAGGTTCTG
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59158515 607 + 153482349 cctcccaaagtactgggattacaggcttgagcccccgcgcctggctCAGTGCAGCTGCCAGTATGGGGCTGAATGACttttttaaaaaaatataagacatttttaataaaagaattta----aaaaGTCTATGGAAGTATTGAGGGTGAGAATCTCTGGTAGCAAGATCTCTATATTAAGTGATGAGATAAGCTTTATTAAAAATGAGAATCAGTCCATACTTAACCTAAGGCTGACAGTGCTGGGCAGAGAGTCCTGCTGTACCACTACCAATGGAGCCAGGCAAGGATGCCTCTCTGCCAGACACAGCACATATGGATGAAGCCACAAGCTATGGCTCATCCCAACAGAATCTTACTAGTTCCCTGGTAAGGTTAGCTATAATGTCTTCTAACTCACATCATTTGTATTAAAAAAAAAAAAGAAAGAAACAAATGATGACTGATACACATGTTGGTTGGTAGAGCTTTCAGGTTCCTTTTTCCATGTAGTAGAGGAAATTCCTCAGCCCATTGTCACCTCGGATCTCATGCTGCAACTCCATCCTTAGCTCAACACCCACTGGCCCCTGCTTTCAAATGGTTGCTGGTCTTCAGGTAGAGCAGGTTATG
i ponAbe2.chr8               C 0 C 0
s rheMac3.chr8                61685738 592 + 150158102 cctcccaaagtgctgggattacaggcatgagccactttgtctggcTCAGTGCAGCTGCCAGTATGGGGCTGAATGGCCTTCTATT--AAATGTAAAACATTTTTAATAAAAGAAGTTAAAGGAAAAGTCTATGGAAATATTGGGGGTGAGAATCTCTGGTAGCAAGATCTCTATATTACCTGACGAGACAAGCTTTATTAAAAATGAGAATCAGTTCATACTTAACCTAAGCCTGACAGTGCTGGAC--AGAGTCCTGCTGTACCACTACCAAT-------GGCAAGGCTGCCTCTCTGTCAGACACAGAACATATGGACAAAGCCACAAGCTATGGCTCATCCCAATAGAATCTTACTAGTTTCCTAGTAAGGTTAGCTATAATGTCTTCTAACTCATATCATTTGTATT------TAAAAAGAAAGAAACAAATGGTAACTGATACACATGTTGGTTGGTAGAGCTTTCAGGTTCCTCTTTCCATGTAGTTGAGGAAATTCCTCAGCCCAGTGTCACCTCAGATCTCATGCTGCAACTCCATCCTTAGCTCAACACCCACTGGCTCCG--CTTGAAATGGTTGCTGATCTTCAGGTAGAGCAGGTTCTG
i rheMac3.chr8               C 0 C 0
s macFas5.chr8                58359643 592 + 146850525 cctcccaaagtgctgggattacaggcatgagccactttgtctggcTCAGTGCAGCTGCCAGTATGGGGCTGAATGGCCTTCTATT--AAATGTAAAACATTTTTAATAAAAGAAGTTAAAGGAAAAGTCTATGGAAGTATTGGGGGTGAGAATCTCTGGTAGCAAGATCTCTATATTACCTGACGAGACAAGCTTTATTAAAAATGAGAATCAGTTCATACTTAACCTAAGCCTGACAGTGCTGGAC--AGAGTCCTGCTGTACCACTACCAAT-------GGCAAGGCTGCCTCTCTGTCAGACACAGAACATATGGACAAAGCCACAAGCTATGGCTCATCCCAATAGAATCTTACTAGTTTCCTAGTAAGGTTAGCTATAATGTCTTCTAACTCATATCATTTGTATT------TAAAAAGAAAGAAACAAATGGTAACTGATACACATGTTGGTTGGTAGAGCTTTCAGGTTCCTCTTTCCATGTAGTTGAGGAAATTCCTCAGCCCAGTGTCACCTCGGATCTCATGCTGCAACTCCATCCTTAGCTCAACACCCACTGGCTCCG--CTTGAAATGGTTGCTGATCTTCAGGTAGAGCAGGTTCTG
i macFas5.chr8               C 0 C 0
s chlSab2.chr8                53279936 590 + 139301422 cctcccaaagtgctgggattacaggcatgagccattttgtctggcTCAGTGCAGCTGCCAGTATGGGGCTGAATGGCCTTTTATT--AAATGTAAAACATTTTTAATAAAAGAAGTTAAAGGAAAAGTCTTTGGAAGTATTGAGGGTAAGAATCTCTGGTAGCAAGATCTCTATATTACCTGACGAGACAAGCTTTATTAAGAACGAGAATCAGTTCATACTTAACCTAAGCCTGACAGTGCTGGACAGAGAGTCCTGCTGTACCACTACCAAT-------GGCAAGGCTGCCTCTCTGTCAGACACAGAACATATAGACAAAGCCGCAAGCTATGGCTCATCCCAATAGACTCTTACTAGTTTCCTAGTAAGGTTAGCTATAATGTCTTCTAACTGATATCATTTGTATT------TAA----AAAGAAACAAATGGTGACTGATACACATGTTGGTTGGTAGAGCTTTCAGGTTCCTCTTTCCACGTAGTTGAGGAAATTCCTCAGCCCAGTATCACCTCGGATCTCATGCTGCAACTCCATCCTTAGCTCAACACCCACTGGCTCCG--CTTCAAATGGTTGCTGATCTTCAGGTAGAGCAGGTTCTG
i chlSab2.chr8               T 4759 C 0
e danRer10.chr19              48218196 5198 -  48790377 I
e ornAna1.Contig1391            115132   0 -    174025 I
e tetNig2.chr10                6379385   0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382   0 -   6649201 I
e hapBur1.JH425491              252157   0 -   1273513 I
e neoBri1.JH422308             3491820   0 -   5414369 I
e araMac1.AOUJ01470298             637   0 -       895 I
e takFla1.KE121866              209731   0 +    220559 I
e fr3.chr10                    9064512   0 +   9126174 I
e ficAlb2.chr4A               19371809   0 +  21182716 I
e anoCar2.chr1               148577473   4 + 263920458 I
e pseHum1.KB221275             1873508 7837 +   2017280 I
e zonAlb1.KB913045            12582000 6532 +  16390125 T
e colLiv1.KB375822             2439586  31 +   2691611 I
e allMis1.JH739658               38113 134 -    691381 I
e falPer1.KB390952             2753956   0 -  18327016 I
e falChe1.KB397350             1707310   0 -   3649919 I
e macEug2.GL124958               26121   0 -     59456 I
e galGal4.chrUn_AADN03023623      2011   0 -      5081 I
e geoFor1.JH740049              182930   0 -   1550430 I
e melGal1.chr7                34310641   0 -  38723565 I
e anaPla1.KB742696             1254472   0 -   1270250 I
e amaVit1.KB277496                3935 1584 -     10329 M
e apaSpi1.KB929104               22324   0 +    818693 I
e cheMyd1.KB605988              134509   0 +    155857 I
e chrPic2.chrUn_KK083223v1      105736   1 +    779542 I
e pelSin1.JH211051               23303   0 +    476004 I
e melUnd1.JH556573              751858   2 +  10614383 I
e taeGut2.chr10               17657297   0 -  20806668 I

a score=373923.000000
s hg38.chr8_KI270814v1_alt      116054 278 +    141812 CAGATCAAAGGACATTTTTCACTAAAAATCTCTGACATCAGAGACAGAGACTACATATCTATAATGAACCTTTCCGAAACCTGTCCATTAGAAAGCCACTTCTCAGTACAGAGGTGGACCTTGGAGACTTTCCAGGATTTTCACATCCATCTGCGAAGAGG------AAAAGAACTCCTGAAACTGGGCTGACTTCATAACCAGTTTAATTTCACACATCTCACCTTTCTGGAGCTGCCTTGTTTTTCCCTTC---TTGCATCACTGCAGAGAAAATTCATGGACTT
s panTro4.chr8                55018545 278 + 143986469 CAGATCAAAGGACATTTTTCACTAAAAATCTCTGACATCAGAGACAGAGACTACATATCTATAATGAACCTTTCCGAAACCTGTCCATTAGAAAGCCACTTCTCAGTACAGAGGTGGCCCTTGGAGTCTTTCCAGGATTTTCACATCCATCTGCGAAGAGG------AAAAGAACTCCTGAAACTGGGCTGACTTCATAACCAGTTTAATTTCACACATCTCACCTTTCTGGAGCTGCCTTGTTTTTCCCTTC---TTGCATCACTGCAGAGAAAATTCATGGACTT
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59159122 278 + 153482349 CAGATCAAAGGACATTTTTCACTAAAAATCTCTGACATTAGAGACAGAGACTACATATCTATAATGAACCTTTCCGAAACCTGTCCATTAGAAAGCCACTTCTCAGCACAGAGGTGGCCCTTGGAGTCTTTCCAGGATTTTCACATCCATCTGGGAATAGG------AAAAGAACTCCTGAAACTGGGCTGACTTCATAACCAGTTTAATTTCACACATCTCACCTTTCTGGAGCTGCCTTGTTTTTCCCTTC---TTGCATCACTGCAGAGAAAATTCATGGACTT
i ponAbe2.chr8               C 0 C 0
s rheMac3.chr8                61686330 281 + 150158102 CAGATCAAAGGACATCCTTTACTAAAAATCTCTGACATCAGAGACAGAGGCTACATGTCTATAACGAACCTTTCAGAAACCTACCCATTAGAAAGCCACTTCTCAACACAGAGGTGGCCCTTGGAGTCTTTCTAGGATTTTCACATCCATCTGGGAAGAGG------AAAAAAACTCCTGAAACTGGGCTGACTTCATAACCAGTTTAATTTCACACATCTCACCTTTCTGGAGCTGCCTTGTTTTTCCCTTCGTGTTGCATCACTGCAGAGAAAATTCATGGACTT
i rheMac3.chr8               C 0 C 0
s macFas5.chr8                58360235 281 + 146850525 CAGATCAAAGGACATCCTTTACTAAAAATCTCTGACATCAGAGACAGAGGCTACATGTCTATAACGAACCTTTCAGAAACCTACCCATTAGAAAGCCACTTCTCAACACAGAGGTGGCCCTTGGAGTCTTTCTAGGATTTTCACATCCATCTGGGAAGAGG------AAAAAAACTCCTGAAACTGGGCTGACTTCATAACCAGTTTAATTTCACACATCTCACCTTTCTGGAGCTGCCTTGTTTTTCCCTTCGTGTTGCATCACTGCAGAGAAAATTCATGGACTT
i macFas5.chr8               C 0 C 0
s chlSab2.chr8                53280526 281 + 139301422 CAGATCAAAGGACATCCTTTACTAAAAATCTCCGACATCAGAGACAGAGGCTACATGTCTATAATGAAGCTTTCAGAAACCTACCCATTAGAAAGCCACTTCTCAACACAGAGGTGGCCCTTGGAGTCTTTCCAGGATTTTCACATCCATCTGGGAAGAGG------AAAAAAACTCCTGAAACTGGGCTGACTTCATAACCAGTTTAATTTCACACATCTCACCTTTCTGGAGCTGCCTTGTTTTTCCCTTTGTGTTGCATCACTGCAGAGAAAATTCGTGGACTT
i chlSab2.chr8               C 0 C 0
s pseHum1.KB221275             1881345 237 +   2017280 CAGCTGGAAAGCCAGCTTT-----GAATTCTCTGACTTGAG--------------------CACTGGGCCAGCACCAAACCCAGCCATAAAAGGATT--------GTGCAGAGCTG---CTTGG----------GGactccctctcccagctgggaatAGGCCAGACAGGAAAATCATTTAAGTTCTCCCTACTCGACAGCGAGTGAATCTTTGAGCATCAGATCTTTCTGTTGCCTTCACTTCTTTCACCTG---ATAAATCCCCTCAGTTGAAA-TCATCGGCTT
i pseHum1.KB221275           I 7837 n 7837
e danRer10.chr19              48218196 5198 -  48790377 I
e ornAna1.Contig1391            115132   0 -    174025 I
e tetNig2.chr10                6379385   0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382   0 -   6649201 I
e hapBur1.JH425491              252157   0 -   1273513 I
e neoBri1.JH422308             3491820   0 -   5414369 I
e araMac1.AOUJ01470298             637   0 -       895 I
e takFla1.KE121866              209731   0 +    220559 I
e fr3.chr10                    9064512   0 +   9126174 I
e ficAlb2.chr4A               19371809   0 +  21182716 I
e anoCar2.chr1               148577473   4 + 263920458 I
e zonAlb1.KB913045            12582000 6532 +  16390125 T
e colLiv1.KB375822             2439586  31 +   2691611 I
e allMis1.JH739658               38113 134 -    691381 I
e falPer1.KB390952             2753956   0 -  18327016 I
e falChe1.KB397350             1707310   0 -   3649919 I
e macEug2.GL124958               26121   0 -     59456 I
e galGal4.chrUn_AADN03023623      2011   0 -      5081 I
e geoFor1.JH740049              182930   0 -   1550430 I
e melGal1.chr7                34310641   0 -  38723565 I
e anaPla1.KB742696             1254472   0 -   1270250 I
e amaVit1.KB277496                3935 1584 -     10329 M
e apaSpi1.KB929104               22324   0 +    818693 I
e cheMyd1.KB605988              134509   0 +    155857 I
e chrPic2.chrUn_KK083223v1      105736   1 +    779542 I
e pelSin1.JH211051               23303   0 +    476004 I
e melUnd1.JH556573              751858   2 +  10614383 I
e taeGut2.chr10               17657297   0 -  20806668 I

a score=289192.000000
s hg38.chr8_KI270814v1_alt      116332 228 +    141812 CCTAAAGGTGAGACTCTGACCCATTAGTAAGAAAGTCTTGCTTTATGTTAAGTTGG-CTTTCTCTGGAGATCTCCTAACTGCTTTATAAACATTCTTTCACACCTCCAAGCAGGTAGGTGGTAACTCATATTCAATTGTTACTTTAGTTTCAGTGATCCCCAGGAGCACTGATCCCCTGACCAGATGCCATGGAGGCTGCTAAGTCAGGTAGCTGGCTGGGCTGTGGAA
s panTro4.chr8                55018823 228 + 143986469 CCTAAAGGTGAGGCTCTGACCCATTAGTAAGAAAGTCTTGCTTTATATTAAGTTGG-CTTTCTCTGGAGATCTCCTAACTGCTTTATAAACATTCTTTCACACCTCCAAGCAGGTAGGTGGTAACTCATATTCAATTGTTACTTTAGTTTCAGTGATCCCCAGGAGCACTGATCCCCTGACCAGATGCCATGGAGGCTGCTAAGTCAGGTAGCTGGCTGGGCTGTGGAA
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59159400 228 + 153482349 CCTAAAGGTGAGACTCTGACCCATTAGTAAGAAAGTCTTGCTTTATATTAAGTTGG-CTTTCTCTGGAGATCTCCTAACTGCTTTATAAACATTCTTTCACACCTCCAAGCAGGTAGGTGGTAACTCATATTCAATTGTTACTTTAGTTTCAGTGATCCCCAGGAGCACTGATCACCTGACCAGATGCCATGGGAGCTGCTAAGTCAGGTAGTTGGCTGGGCTGTGGAA
i ponAbe2.chr8               C 0 C 0
s rheMac3.chr8                61686611 229 + 150158102 CCTAAAGGTGAGGCTCTCACCCATTAGTAAGAAAGTCTCTCTTTATATTAAGTTGGCCTTTCTCTGGAGATCTTGTAACTGCTTTATAAACATTCTTTCACACCTCCAAGCAGGTAGGTGGTAATTGATATTCAATTGTTACTTTAGTTTCCGTGATCCCCAGGAGCACAGATCCCCTGACCAGGTGTCATGGTGGCTGCTAAGTCAGGTAGTTGGCTGGGCTGTGGAA
i rheMac3.chr8               C 0 C 0
s macFas5.chr8                58360516 229 + 146850525 CCTAAAGGTGAGGCTCTCACCCATTAGTAAGAAAGTCTCTCTTTATATTAAGTTGGCCTTTCTCTGGAGATCTTGTAACTGCTTTATAAACATTCTTTCACACCTCCAAGCAGGTAGGTGGTAATTGATATTCAATTGTTACTTTAGTTTCCGTGATCCCCAGGAGCACAGATCCCCTGACCAGGTGTCATGGTGGCTGCTAAGTCAGGTAGTTGGCTGGGCTGTGGAA
i macFas5.chr8               C 0 C 0
s chlSab2.chr8                53280807 226 + 139301422 CCTAAAGGTGAGGCTCTCACCCATTAGTAAGAAAGTCTCCCTTTATATTAAGTTGGCCTTTCTCTGGAGATCTTGTAACTGCTTTATAAACGTTCTTTCACACCTCCAAGCAGGTAGGTGGTAATTTATATTCAATTGTTACTTTAGTTTCTGTGATCCCCAGGAGCAAGGATCCCCTGACCAGGTGTCATGGTG---GCTAAGGCAGGTAGTTGGCTGAGCTGTGGAA
i chlSab2.chr8               C 0 C 0
e danRer10.chr19              48218196 5198 -  48790377 I
e ornAna1.Contig1391            115132   0 -    174025 I
e tetNig2.chr10                6379385   0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382   0 -   6649201 I
e hapBur1.JH425491              252157   0 -   1273513 I
e neoBri1.JH422308             3491820   0 -   5414369 I
e araMac1.AOUJ01470298             637   0 -       895 I
e takFla1.KE121866              209731   0 +    220559 I
e fr3.chr10                    9064512   0 +   9126174 I
e ficAlb2.chr4A               19371809   0 +  21182716 I
e anoCar2.chr1               148577473   4 + 263920458 I
e pseHum1.KB221275             1881582 7837 +   2017280 I
e zonAlb1.KB913045            12582000 6532 +  16390125 T
e colLiv1.KB375822             2439586  31 +   2691611 I
e allMis1.JH739658               38113 134 -    691381 I
e falPer1.KB390952             2753956   0 -  18327016 I
e falChe1.KB397350             1707310   0 -   3649919 I
e macEug2.GL124958               26121   0 -     59456 I
e galGal4.chrUn_AADN03023623      2011   0 -      5081 I
e geoFor1.JH740049              182930   0 -   1550430 I
e melGal1.chr7                34310641   0 -  38723565 I
e anaPla1.KB742696             1254472   0 -   1270250 I
e amaVit1.KB277496                3935 1584 -     10329 M
e apaSpi1.KB929104               22324   0 +    818693 I
e cheMyd1.KB605988              134509   0 +    155857 I
e chrPic2.chrUn_KK083223v1      105736   1 +    779542 I
e pelSin1.JH211051               23303   0 +    476004 I
e melUnd1.JH556573              751858   2 +  10614383 I
e taeGut2.chr10               17657297   0 -  20806668 I

a score=23586.000000
s hg38.chr8_KI270814v1_alt      116560 15 +    141812 CAATGGGCAAAACCA
s panTro4.chr8                55019051 15 + 143986469 CAATGGGCAAAATCA
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59159628 15 + 153482349 CAATGGGCAAAACCA
i ponAbe2.chr8               C 0 C 0
s rheMac3.chr8                61686840 15 + 150158102 CAATGGGCAAAACCA
i rheMac3.chr8               C 0 C 0
s macFas5.chr8                58360745 15 + 146850525 CAATGGGCAAAACCA
i macFas5.chr8               C 0 C 0
s chlSab2.chr8                53281033 15 + 139301422 CAATGGGCAAAACCA
i chlSab2.chr8               C 0 C 0
s calJac3.chr7                33669922 15 + 155834243 CAAGGGAGAGAACTG
i calJac3.chr7               N 0 C 0
e danRer10.chr19              48218196 5198 -  48790377 I
e ornAna1.Contig1391            115132  0 -    174025 I
e tetNig2.chr10                6379385  0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382  0 -   6649201 I
e hapBur1.JH425491              252157  0 -   1273513 I
e neoBri1.JH422308             3491820  0 -   5414369 I
e araMac1.AOUJ01470298             637  0 -       895 I
e takFla1.KE121866              209731  0 +    220559 I
e fr3.chr10                    9064512  0 +   9126174 I
e ficAlb2.chr4A               19371809  0 +  21182716 I
e anoCar2.chr1               148577473  4 + 263920458 I
e pseHum1.KB221275             1881582 7837 +   2017280 I
e zonAlb1.KB913045            12582000 6532 +  16390125 T
e colLiv1.KB375822             2439586 31 +   2691611 I
e allMis1.JH739658               38113 134 -    691381 I
e falPer1.KB390952             2753956  0 -  18327016 I
e falChe1.KB397350             1707310  0 -   3649919 I
e macEug2.GL124958               26121  0 -     59456 I
e galGal4.chrUn_AADN03023623      2011  0 -      5081 I
e geoFor1.JH740049              182930  0 -   1550430 I
e melGal1.chr7                34310641  0 -  38723565 I
e anaPla1.KB742696             1254472  0 -   1270250 I
e amaVit1.KB277496                3935 1584 -     10329 M
e apaSpi1.KB929104               22324  0 +    818693 I
e cheMyd1.KB605988              134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1      105736  1 +    779542 I
e pelSin1.JH211051               23303  0 +    476004 I
e melUnd1.JH556573              751858  2 +  10614383 I
e taeGut2.chr10               17657297  0 -  20806668 I

a score=231676.000000
s hg38.chr8_KI270814v1_alt      116575 112 +    141812 CAGCTCAGCCCCATTGTCTTTGGCTGCAGATTACCCAGCAACAGGGCCGCTCTCCAGATGCAGGTCAAGGAGGAGTGGACCCTGAGGCCTGGCAGCAGGCACACTTAGCTAC
s panTro4.chr8                55019066 112 + 143986469 CAGCTCAGCCCCATTGTCTTTGGCTGCAGATTACCCAGCAACAGGGCCGCTCTCCAGATGCAGGTCAAGGAGGAGTGGACCCTGAGGCCTGGCAGCACGCACACTTAGCTAC
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59159643 112 + 153482349 CAGCTCAGCCCAATCGTCTTTGGCTGCAGATTACCCAGCAACAGGGCCGCTCTCCAGATGCAGGTCAAGGAGGAGCGGACCCTGAGGCCTGGCAGCAGGCACACTTAGCGAC
i ponAbe2.chr8               C 0 C 0
s nomLeu3.chr18               81375658 112 - 104879549 CAGCTCAGCCCCATCCAGGATGGCTGCAGATTACCCAGCGCTACCGCCATACTCCAGATGCTGGTCAACGAGGAAGGGATCCTGAGGCCTGGCAGCGGGCGCTCTCAGCAAC
i nomLeu3.chr18              N 0 C 0
s rheMac3.chr8                61686855 112 + 150158102 CAGCTCAGCTCTATCGTCTTTGGCTTCAGATTATCTGGCAACAGGGCCGCTCTCCAGATGAAGGTCAAGGAGGAGTGGACCCTGAGGCCTGGCAGCAGGCACACTTAGCGAC
i rheMac3.chr8               C 0 C 0
s macFas5.chr8                58360760 112 + 146850525 CAGCTCAGCTCTATCGTCTTTGGCTTCAGATTATCCGGCAACAGGGCCGCTCTCCAGATGAAGGTCAAGGAGGAGTGGACCCTGAGGCCTGGCAGCAGGCACACTTAGCGAC
i macFas5.chr8               C 0 C 0
s chlSab2.chr8                53281048 112 + 139301422 CAGCTCAGCTCTATCGTCTTTGGCTGCAGATTATCTGGCAACAGGGCCGCTCTCCAGATGGAGGTCAAGGAGGAGTGGACCCTGAGGCCTGGCAGCAGGCACACTTGGAAAC
i chlSab2.chr8               C 0 C 0
s calJac3.chr7                33669937 112 + 155834243 CAGCTCAGCCCCATCCAGGATGACTGCAGATTACCCAGCGCCACCGCCATTCTCCAGATGCAGGCCAAGGAGGAAGGGATCCTGAGGCCTGGCAGTGGGCACACTCAGCAAC
i calJac3.chr7               C 0 C 0
e danRer10.chr19              48218196 5198 -  48790377 I
e ornAna1.Contig1391            115132   0 -    174025 I
e tetNig2.chr10                6379385   0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382   0 -   6649201 I
e hapBur1.JH425491              252157   0 -   1273513 I
e neoBri1.JH422308             3491820   0 -   5414369 I
e araMac1.AOUJ01470298             637   0 -       895 I
e takFla1.KE121866              209731   0 +    220559 I
e fr3.chr10                    9064512   0 +   9126174 I
e ficAlb2.chr4A               19371809   0 +  21182716 I
e anoCar2.chr1               148577473   4 + 263920458 I
e pseHum1.KB221275             1881582 7837 +   2017280 I
e zonAlb1.KB913045            12582000 6532 +  16390125 T
e colLiv1.KB375822             2439586  31 +   2691611 I
e allMis1.JH739658               38113 134 -    691381 I
e falPer1.KB390952             2753956   0 -  18327016 I
e falChe1.KB397350             1707310   0 -   3649919 I
e macEug2.GL124958               26121   0 -     59456 I
e galGal4.chrUn_AADN03023623      2011   0 -      5081 I
e geoFor1.JH740049              182930   0 -   1550430 I
e melGal1.chr7                34310641   0 -  38723565 I
e anaPla1.KB742696             1254472   0 -   1270250 I
e amaVit1.KB277496                3935 1584 -     10329 M
e apaSpi1.KB929104               22324   0 +    818693 I
e cheMyd1.KB605988              134509   0 +    155857 I
e chrPic2.chrUn_KK083223v1      105736   1 +    779542 I
e pelSin1.JH211051               23303   0 +    476004 I
e melUnd1.JH556573              751858   2 +  10614383 I
e taeGut2.chr10               17657297   0 -  20806668 I

a score=53003.000000
s hg38.chr8_KI270814v1_alt      116687 39 +    141812 CTGGAGGCCTTCTGAGGGAAGCCCCATATCCGGAGCCAG
s panTro4.chr8                55019178 39 + 143986469 CTGGAGGCCTTCTGAGTGAAGCCCCATATCGGGAGCCAG
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59159755 39 + 153482349 CTGGAGGCCTTCTGAGGGAAGCCCCATATCCGGAGCCAG
i ponAbe2.chr8               C 0 C 0
s nomLeu3.chr18               81375770 36 - 104879549 CTTGAGGCCCTCTAAACGGGACCCGCCATCCCTGCC---
i nomLeu3.chr18              C 0 C 0
s rheMac3.chr8                61686967 39 + 150158102 CTGGAGGCCTTCTGAGGGAAGCCCCATATTCGGAGCCAG
i rheMac3.chr8               C 0 C 0
s macFas5.chr8                58360872 39 + 146850525 CTGGAGGCCTTCTGAGGGAAGCCCCATATTCGGAGCCAG
i macFas5.chr8               C 0 C 0
s chlSab2.chr8                53281160 39 + 139301422 CTGGAGGCCTTCTGAGGGAAGCCCCATTTTCGGAGCCAG
i chlSab2.chr8               C 0 C 0
s calJac3.chr7                33670049 38 + 155834243 CTTGAAACTCTCCAAACGGGACCTGCCATCCGTGCCCC-
i calJac3.chr7               C 0 C 0
s taeGut2.chr28                3059577 39 +   4963201 CAGGAGCGCGGCCGGTGAGAGCTCCGGGCGTGGGGAGTG
i taeGut2.chr28              n 0 C 0
e danRer10.chr19              48218196 5198 -  48790377 I
e ornAna1.Contig1391            115132  0 -    174025 I
e tetNig2.chr10                6379385  0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382  0 -   6649201 I
e hapBur1.JH425491              252157  0 -   1273513 I
e neoBri1.JH422308             3491820  0 -   5414369 I
e araMac1.AOUJ01470298             637  0 -       895 I
e takFla1.KE121866              209731  0 +    220559 I
e fr3.chr10                    9064512  0 +   9126174 I
e ficAlb2.chr4A               19371809  0 +  21182716 I
e anoCar2.chr1               148577473  4 + 263920458 I
e pseHum1.KB221275             1881582 7837 +   2017280 I
e zonAlb1.KB913045            12582000 6532 +  16390125 T
e colLiv1.KB375822             2439586 31 +   2691611 I
e allMis1.JH739658               38113 134 -    691381 I
e falPer1.KB390952             2753956  0 -  18327016 I
e falChe1.KB397350             1707310  0 -   3649919 I
e macEug2.GL124958               26121  0 -     59456 I
e galGal4.chrUn_AADN03023623      2011  0 -      5081 I
e geoFor1.JH740049              182930  0 -   1550430 I
e melGal1.chr7                34310641  0 -  38723565 I
e anaPla1.KB742696             1254472  0 -   1270250 I
e amaVit1.KB277496                3935 1584 -     10329 M
e apaSpi1.KB929104               22324  0 +    818693 I
e cheMyd1.KB605988              134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1      105736  1 +    779542 I
e pelSin1.JH211051               23303  0 +    476004 I
e melUnd1.JH556573              751858  2 +  10614383 I

a score=35543.000000
s hg38.chr8_KI270814v1_alt      116726 49 +    141812 TACCTGAGCTACAGCCGCTACGTGCAGGTTGC--GCACTGATAGA----AGTGGC------------------
s panTro4.chr8                55019217 49 + 143986469 TACCTGAGCTACAGCCGCTACGTGCAGGTTGC--GCACTGATAGA----AGTGGC------------------
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59159794 49 + 153482349 TACCTGAGCTACAGCCGCTACCTGCAGGTTGC--GCACTGATGGA----AGTGGC------------------
i ponAbe2.chr8               C 0 C 0
s nomLeu3.chr18               81375806 49 - 104879549 TGTCAGAACTGTAGCCGCTACCTGCACTTGGC--TCACAGGCAAA----TATGGC------------------
i nomLeu3.chr18              C 0 C 0
s chlSab2.chr8                53281199 53 + 139301422 TACCTGAGCTACAGCCACTACATACAGGTTGT--GCACTGATTGATAGCGGTGGC------------------
i chlSab2.chr8               C 0 C 0
s calJac3.chr7                33670087 49 + 155834243 TGTCTGAGCTGTAGCTGCTACCAGCACTTGGC--ACACAGGCAAA----TACGGC------------------
i calJac3.chr7               C 0 C 0
s taeGut2.chr28                3059616 61 +   4963201 --------TCCCCGCCGCCACCTCCACTCCGCGGGCGCTGATCGG----AGTGGAGGAAACTGAGGCACGGGC
i taeGut2.chr28              C 0 I 8
e danRer10.chr19              48218196 5198 -  48790377 I
e ornAna1.Contig1391            115132  0 -    174025 I
e tetNig2.chr10                6379385  0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382  0 -   6649201 I
e hapBur1.JH425491              252157  0 -   1273513 I
e neoBri1.JH422308             3491820  0 -   5414369 I
e araMac1.AOUJ01470298             637  0 -       895 I
e takFla1.KE121866              209731  0 +    220559 I
e fr3.chr10                    9064512  0 +   9126174 I
e ficAlb2.chr4A               19371809  0 +  21182716 I
e anoCar2.chr1               148577473  4 + 263920458 I
e pseHum1.KB221275             1881582 7837 +   2017280 I
e zonAlb1.KB913045            12582000 6532 +  16390125 T
e colLiv1.KB375822             2439586 31 +   2691611 I
e allMis1.JH739658               38113 134 -    691381 I
e falPer1.KB390952             2753956  0 -  18327016 I
e falChe1.KB397350             1707310  0 -   3649919 I
e macEug2.GL124958               26121  0 -     59456 I
e galGal4.chrUn_AADN03023623      2011  0 -      5081 I
e geoFor1.JH740049              182930  0 -   1550430 I
e melGal1.chr7                34310641  0 -  38723565 I
e anaPla1.KB742696             1254472  0 -   1270250 I
e amaVit1.KB277496                3935 1584 -     10329 M
e apaSpi1.KB929104               22324  0 +    818693 I
e cheMyd1.KB605988              134509  0 +    155857 I
e chrPic2.chrUn_KK083223v1      105736  1 +    779542 I
e pelSin1.JH211051               23303  0 +    476004 I
e melUnd1.JH556573              751858  2 +  10614383 I
e rheMac3.chr8                61687006  0 + 150158102 C
e macFas5.chr8                58360911  0 + 146850525 C

a score=36246.000000
s hg38.chr8_KI270814v1_alt      116775 89 +    141812 CCTG----CAGCCTCCAACTTCCCGCTTCCCCTCTGGGCCCCAGCAGCGCAGACTCCCATGTCA-----GATGCCACTG--CCGCGCCTAAGTCAGGTGG
s panTro4.chr8                55019266 89 + 143986469 CCTG----CAGCCTCCAACTTCCCGCTTCCCCTCTGGACCCCAGCAGCGCAGACTCCCATGTCA-----GATGCCACTG--CCGCGCCTAAGTCAGGTGG
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59159843 88 + 153482349 CCTG----CAGCCTCCAACTTCCCGCTT-CCCTCTGGGCCCCAGCAGCGCAGACTCCCACGTCA-----GATGCCACTG--CCGCGCCTAAGTCAGGTGT
i ponAbe2.chr8               C 0 C 0
s nomLeu3.chr18               81375855 53 - 104879549 CAAG----CAACCCCAAACTCCCCTCTTCCCCTCTGGGCCCAGGCAGTGCTGAACCT-------------------------------------------
i nomLeu3.chr18              C 0 C 0
s chlSab2.chr8                53281252 89 + 139301422 CCTG----CAACCTCCAACTTCCTGCTTCCCCTCTGGGCCCCAGCAGCGCAGACTCCCAGGTCA-----GATGCCACTG--CCGCGCCTAAGTCAGGTGG
i chlSab2.chr8               C 0 C 0
s calJac3.chr7                33670136 86 + 155834243 CGAG----GAACC-CAAACTCCCCGCTTCCCCTCCGGGCCTAAGTAACGTGGACT--GGGGTGA-----GACTCCGCTG--CTGTGCTGAAGTCAGTCGG
i calJac3.chr7               C 0 C 0
s taeGut2.chr28                3059685 75 +   4963201 CCCGTTTGTGCCGCGCCTCTGCTGGCTCCCGGTGGAGGCGGCGGC--TGCTGAG---------------gttgccgtgg--ccgtggcgacgtg------
i taeGut2.chr28              I 8 C 0
s chrPic2.chrUn_KK088237v1     1204537 90 +  22294289 CCCA-------CGCCCCGCTGGTCGCT-CCGGCTCAGCTGCCGGC--TGCAGAGTCTCAACTCACGCACGTCGGCGGAGACCCGGGCCCACGTGGTGCTG
i chrPic2.chrUn_KK088237v1   n 1 C 0
e danRer10.chr19              48218196 5198 -  48790377 I
e ornAna1.Contig1391            115132  0 -    174025 I
e tetNig2.chr10                6379385  0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382  0 -   6649201 I
e hapBur1.JH425491              252157  0 -   1273513 I
e neoBri1.JH422308             3491820  0 -   5414369 I
e araMac1.AOUJ01470298             637  0 -       895 I
e takFla1.KE121866              209731  0 +    220559 I
e fr3.chr10                    9064512  0 +   9126174 I
e ficAlb2.chr4A               19371809  0 +  21182716 I
e anoCar2.chr1               148577473  4 + 263920458 I
e pseHum1.KB221275             1881582 7837 +   2017280 I
e zonAlb1.KB913045            12582000 6532 +  16390125 T
e colLiv1.KB375822             2439586 31 +   2691611 I
e allMis1.JH739658               38113 134 -    691381 I
e falPer1.KB390952             2753956  0 -  18327016 I
e falChe1.KB397350             1707310  0 -   3649919 I
e macEug2.GL124958               26121  0 -     59456 I
e galGal4.chrUn_AADN03023623      2011  0 -      5081 I
e geoFor1.JH740049              182930  0 -   1550430 I
e melGal1.chr7                34310641  0 -  38723565 I
e anaPla1.KB742696             1254472  0 -   1270250 I
e amaVit1.KB277496                3935 1584 -     10329 M
e apaSpi1.KB929104               22324  0 +    818693 I
e cheMyd1.KB605988              134509  0 +    155857 I
e pelSin1.JH211051               23303  0 +    476004 I
e melUnd1.JH556573              751858  2 +  10614383 I
e rheMac3.chr8                61687006  0 + 150158102 C
e macFas5.chr8                58360911  0 + 146850525 C

a score=-9283.000000
s hg38.chr8_KI270814v1_alt      116864 71 +    141812 ---------------------------TCCGCCTTGCAGCAG--------------------CACGAGGGC---GGGAAAAGGCCACTCAGCCTCATACTGGCAGCTGCACAGTGCCCAGA
s panTro4.chr8                55019355 71 + 143986469 ---------------------------TCCGCCTTGCAGCAG--------------------CACGAGGGC---GGGAAAAGGCCACTCAGCCTCATACTGGCAGCTGCACAGTGCCCAGA
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59159931 71 + 153482349 ---------------------------TCTGCCTTGCAGCAG--------------------CACGAGGGC---GGGAAAAGGCCACTCAGCCCCATACTGGCAGCTGCACATTGCCCAGA
i ponAbe2.chr8               C 0 C 0
s nomLeu3.chr18               81375908 39 - 104879549 ----------------------------------------------------------------------------------GCCGCTCACCCCCATCCTGGCGACTGCACAGTGTCCAGA
i nomLeu3.chr18              C 0 C 0
s chlSab2.chr8                53281341 67 + 139301422 ---------------------------TCTGCCCTGCAGCAG--------------------GACGAGGGC---GGGAAAATG----TCAGCCCCGTAATGGCAGCTGCACAGTACCCAGA
i chlSab2.chr8               C 0 C 0
s calJac3.chr7                33670222 70 + 155834243 ---------------------------TCAGCCCTCTGTCTG--------------------CACCAGGGC---AGGAACC-GCCGCTCATCCCCATCCTGGCGGCTGCCCAGTGCCCAGA
i calJac3.chr7               C 0 C 0
s taeGut2.chr28                3059760 79 +   4963201 tccgtccgtagcgtgagccggccgggccgGGAGCGGATGCAG---------------------CCGCGGCG---AGGCGCGGGGGAAGCGGCTCCC------------------GCCCGAT
i taeGut2.chr28              C 0 C 0
s pseHum1.KB221209            10757914 98 +  11841479 tcagcctttc-----------ctgggcacggagatgctccaggcccttcagCACCCTCACAACCTGCGACGGAAGGGCACGGCAGGCCCGGGCCGC------------CTCGAGGCCGGGT
i pseHum1.KB221209           n 7837 C 0
s chrPic2.chrUn_KK088237v1     1204627 68 +  22294289 -----------------TCCAATGGGCCTCGCAC-GCTGCAG--------------------CCTGCGGGA---AGGAAAGAGGCCGTTGTGCCAG------------CGTAGGGACAAGC
i chrPic2.chrUn_KK088237v1   C 0 C 0
e danRer10.chr19              48218196 5198 -  48790377 I
e ornAna1.Contig1391            115132  0 -    174025 I
e tetNig2.chr10                6379385  0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382  0 -   6649201 I
e hapBur1.JH425491              252157  0 -   1273513 I
e neoBri1.JH422308             3491820  0 -   5414369 I
e araMac1.AOUJ01470298             637  0 -       895 I
e takFla1.KE121866              209731  0 +    220559 I
e fr3.chr10                    9064512  0 +   9126174 I
e ficAlb2.chr4A               19371809  0 +  21182716 I
e anoCar2.chr1               148577473  4 + 263920458 I
e zonAlb1.KB913045            12582000 6532 +  16390125 T
e colLiv1.KB375822             2439586 31 +   2691611 I
e allMis1.JH739658               38113 134 -    691381 I
e falPer1.KB390952             2753956  0 -  18327016 I
e falChe1.KB397350             1707310  0 -   3649919 I
e macEug2.GL124958               26121  0 -     59456 I
e galGal4.chrUn_AADN03023623      2011  0 -      5081 I
e geoFor1.JH740049              182930  0 -   1550430 I
e melGal1.chr7                34310641  0 -  38723565 I
e anaPla1.KB742696             1254472  0 -   1270250 I
e amaVit1.KB277496                3935 1584 -     10329 M
e apaSpi1.KB929104               22324  0 +    818693 I
e cheMyd1.KB605988              134509  0 +    155857 I
e pelSin1.JH211051               23303  0 +    476004 I
e melUnd1.JH556573              751858  2 +  10614383 I
e rheMac3.chr8                61687006  0 + 150158102 C
e macFas5.chr8                58360911  0 + 146850525 C

a score=-8533.000000
s hg38.chr8_KI270814v1_alt      116935 36 +    141812 --------ACCCACCAC------CTCGTGCCAAGGAAGAGCACAC---CCTAG
s panTro4.chr8                55019426 36 + 143986469 --------ACCCGCCAC------CTCGTGCCAAGGAAGAGCACAC---CCTAG
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59160002 36 + 153482349 --------ACCCGCCAC------CTCGTGCCAAGGAAGAGCACAC---CCTAG
i ponAbe2.chr8               C 0 C 0
s chlSab2.chr8                53281408 28 + 139301422 --------ACTCACCAC------CTCGTGCCAAGGAAGAGCA-----------
i chlSab2.chr8               C 0 C 0
s calJac3.chr7                33670292 42 + 155834243 --------GCCCAGCTCTCTGGGCTTGAGCCAAGGAAGAGGCTGG---CCTGG
i calJac3.chr7               C 0 C 0
s taeGut2.chr28                3059839 40 +   4963201 CG-----TCCCCGGCCC------ACGCTGGCA--GCAGGTTCCTCTTTCCAGA
i taeGut2.chr28              C 0 C 0
s pseHum1.KB221209            10758012 47 +  11841479 CGAaggcccgtcgggcc------tgggtggcagggcgggccgagccaggcagg
i pseHum1.KB221209           C 0 C 0
s chrPic2.chrUn_KK088237v1     1204695 35 +  22294289 AG-----CAGCCGCAGT------ACGTAGGGAATCCAGGAC-------CCAGG
i chrPic2.chrUn_KK088237v1   C 0 C 0
e danRer10.chr19              48218196 5198 -  48790377 I
e ornAna1.Contig1391            115132  0 -    174025 I
e tetNig2.chr10                6379385  0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382  0 -   6649201 I
e hapBur1.JH425491              252157  0 -   1273513 I
e neoBri1.JH422308             3491820  0 -   5414369 I
e araMac1.AOUJ01470298             637  0 -       895 I
e takFla1.KE121866              209731  0 +    220559 I
e fr3.chr10                    9064512  0 +   9126174 I
e ficAlb2.chr4A               19371809  0 +  21182716 I
e anoCar2.chr1               148577473  4 + 263920458 I
e zonAlb1.KB913045            12582000 6532 +  16390125 T
e colLiv1.KB375822             2439586 31 +   2691611 I
e allMis1.JH739658               38113 134 -    691381 I
e falPer1.KB390952             2753956  0 -  18327016 I
e falChe1.KB397350             1707310  0 -   3649919 I
e macEug2.GL124958               26121  0 -     59456 I
e galGal4.chrUn_AADN03023623      2011  0 -      5081 I
e geoFor1.JH740049              182930  0 -   1550430 I
e melGal1.chr7                34310641  0 -  38723565 I
e anaPla1.KB742696             1254472  0 -   1270250 I
e amaVit1.KB277496                3935 1584 -     10329 M
e apaSpi1.KB929104               22324  0 +    818693 I
e cheMyd1.KB605988              134509  0 +    155857 I
e pelSin1.JH211051               23303  0 +    476004 I
e melUnd1.JH556573              751858  2 +  10614383 I
e nomLeu3.chr18               81375947  0 - 104879549 C
e rheMac3.chr8                61687006  0 + 150158102 C
e macFas5.chr8                58360911  0 + 146850525 C

a score=4894.000000
s hg38.chr8_KI270814v1_alt      116971 9 +    141812 AATGGGAGG
s panTro4.chr8                55019462 9 + 143986469 AATGGGAGG
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59160038 9 + 153482349 AATGGGAGG
i ponAbe2.chr8               C 0 C 0
s chlSab2.chr8                53281436 3 + 139301422 -----GAG-
i chlSab2.chr8               C 0 C 0
s calJac3.chr7                33670334 9 + 155834243 AGTGGGAGG
i calJac3.chr7               C 0 I 20
s taeGut2.chr28                3059879 9 +   4963201 ATGCGCGGG
i taeGut2.chr28              C 0 I 2
s pseHum1.KB221209            10758059 9 +  11841479 agggccagg
i pseHum1.KB221209           C 0 C 0
s chrPic2.chrUn_KK088237v1     1204730 9 +  22294289 GATGTCAGG
i chrPic2.chrUn_KK088237v1   C 0 C 0
s xenTro7.KB021922               91738 9 +    142779 AGCAGGAGG
i xenTro7.KB021922           N 0 C 0
e danRer10.chr19              48218196 5198 -  48790377 I
e ornAna1.Contig1391            115132 0 -    174025 I
e tetNig2.chr10                6379385 0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382 0 -   6649201 I
e hapBur1.JH425491              252157 0 -   1273513 I
e neoBri1.JH422308             3491820 0 -   5414369 I
e araMac1.AOUJ01470298             637 0 -       895 I
e takFla1.KE121866              209731 0 +    220559 I
e fr3.chr10                    9064512 0 +   9126174 I
e ficAlb2.chr4A               19371809 0 +  21182716 I
e anoCar2.chr1               148577473 4 + 263920458 I
e zonAlb1.KB913045            12582000 6532 +  16390125 T
e colLiv1.KB375822             2439586 31 +   2691611 I
e allMis1.JH739658               38113 134 -    691381 I
e falPer1.KB390952             2753956 0 -  18327016 I
e falChe1.KB397350             1707310 0 -   3649919 I
e macEug2.GL124958               26121 0 -     59456 I
e galGal4.chrUn_AADN03023623      2011 0 -      5081 I
e geoFor1.JH740049              182930 0 -   1550430 I
e melGal1.chr7                34310641 0 -  38723565 I
e anaPla1.KB742696             1254472 0 -   1270250 I
e amaVit1.KB277496                3935 1584 -     10329 M
e apaSpi1.KB929104               22324 0 +    818693 I
e cheMyd1.KB605988              134509 0 +    155857 I
e pelSin1.JH211051               23303 0 +    476004 I
e melUnd1.JH556573              751858 2 +  10614383 I
e nomLeu3.chr18               81375947 0 - 104879549 C
e rheMac3.chr8                61687006 0 + 150158102 C
e macFas5.chr8                58360911 0 + 146850525 C

a score=5513.000000
s hg38.chr8_KI270814v1_alt      116980 8 +    141812 TTGGGCAC
s panTro4.chr8                55019471 8 + 143986469 TTAGGCAC
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59160047 8 + 153482349 TTGGGCAC
i ponAbe2.chr8               C 0 C 0
s taeGut2.chr28                3059890 8 +   4963201 CGTGGCGG
i taeGut2.chr28              I 2 C 0
s pseHum1.KB221209            10758068 8 +  11841479 ccaggcag
i pseHum1.KB221209           C 0 C 0
s chrPic2.chrUn_KK088237v1     1204739 8 +  22294289 CTGGGTGA
i chrPic2.chrUn_KK088237v1   C 0 C 0
s xenTro7.KB021922               91747 8 +    142779 TTAGGCAC
i xenTro7.KB021922           C 0 C 0
e danRer10.chr19              48218196 5198 -  48790377 I
e ornAna1.Contig1391            115132 0 -    174025 I
e tetNig2.chr10                6379385 0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382 0 -   6649201 I
e hapBur1.JH425491              252157 0 -   1273513 I
e neoBri1.JH422308             3491820 0 -   5414369 I
e araMac1.AOUJ01470298             637 0 -       895 I
e takFla1.KE121866              209731 0 +    220559 I
e fr3.chr10                    9064512 0 +   9126174 I
e ficAlb2.chr4A               19371809 0 +  21182716 I
e anoCar2.chr1               148577473 4 + 263920458 I
e zonAlb1.KB913045            12582000 6532 +  16390125 T
e colLiv1.KB375822             2439586 31 +   2691611 I
e allMis1.JH739658               38113 134 -    691381 I
e falPer1.KB390952             2753956 0 -  18327016 I
e falChe1.KB397350             1707310 0 -   3649919 I
e macEug2.GL124958               26121 0 -     59456 I
e galGal4.chrUn_AADN03023623      2011 0 -      5081 I
e geoFor1.JH740049              182930 0 -   1550430 I
e melGal1.chr7                34310641 0 -  38723565 I
e anaPla1.KB742696             1254472 0 -   1270250 I
e amaVit1.KB277496                3935 1584 -     10329 M
e apaSpi1.KB929104               22324 0 +    818693 I
e cheMyd1.KB605988              134509 0 +    155857 I
e pelSin1.JH211051               23303 0 +    476004 I
e calJac3.chr7                33670343 20 + 155834243 I
e melUnd1.JH556573              751858 2 +  10614383 I
e nomLeu3.chr18               81375947 0 - 104879549 C
e rheMac3.chr8                61687006 0 + 150158102 C
e macFas5.chr8                58360911 0 + 146850525 C
e chlSab2.chr8                53281439 0 + 139301422 C

a score=40088.000000
s hg38.chr8_KI270814v1_alt      116988 74 +    141812 ACCCTA---------GAATGGGAGGAGCAGCAGAGCCTAGA---ATGGGAGGC-TGGTGTCCTCGGGGACCCTA---AGGCTGTCTGGGA-
s panTro4.chr8                55019479 74 + 143986469 ACCCTA---------GAATGGGAGGAGCAGCAGAGCCTAGA---ATGGGAGGC-TGGTGTCCTCGGGGACCCTA---AGGCTGTCTGGGA-
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59160055 70 + 153482349 ACCCTA---------GAATGGGAGGAACAGCAGAGCCTAGA---ATGGGAGGC-TGGTGTCCTCGGGGACCCTA---AGG----CTGGGA-
i ponAbe2.chr8               C 0 C 0
s rheMac3.chr8                61687006 74 + 150158102 ACCCTA---------GAATGGGAGAAACAACAGAGCCTAGA---ATGGGAGAC-TGGTGTCCTCGGCGCCCCTA---AGGCTGTCTGGGA-
i rheMac3.chr8               C 0 C 0
s macFas5.chr8                58360911 74 + 146850525 ACCCTA---------GAATGGGAGGAACAACAGAGCCTAGA---ATGGGAGAC-TGGTGTCCTCGGCGACCCTA---AGGCTGTCTGGGA-
i macFas5.chr8               C 0 C 0
s chlSab2.chr8                53281439 72 + 139301422 --CCTA---------GAATGGGAGGAACAACAGAGCCTAGA---ATGGGAGAC-TGGTGTCCTCTGCGACCCTA---AAGCTGTCTGGGA-
i chlSab2.chr8               C 0 C 0
s taeGut2.chr28                3059898 62 +   4963201 AGCTGG-----CCCCGCAGAACC-------CAGGGCCGGCCCCACGGTCA--------GTCCCCGGG-----AG---GGTCGTGCCGTGA-
i taeGut2.chr28              C 0 C 0
s pseHum1.KB221209            10758076 63 +  11841479 ggccga---------gcagagcagg----gcagggcagggc---agggcg--------gcccgcgggcccgcgg---ggccgggccgggc-
i pseHum1.KB221209           C 0 C 0
s chrPic2.chrUn_KK088237v1     1204747 74 +  22294289 TCCCTAGGGTCCCTTGATCAGCTGGA--AGCAGGACCCTTC---CCTGGA--------GCCCTCGGGGACCCCG---GAGCCCTTCGTAC-
i chrPic2.chrUn_KK088237v1   C 0 C 0
s xenTro7.KB021922               91755 77 +    142779 TTACAA---------GTACAGCCGTA--AGCAGAGCGATGA---GCTGCGGGCGCAGAAGCTTCCAGAACTCGGCCCAGTTGAACTCGGGT
i xenTro7.KB021922           C 0 C 0
e danRer10.chr19              48218196 5198 -  48790377 I
e ornAna1.Contig1391            115132  0 -    174025 I
e tetNig2.chr10                6379385  0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382  0 -   6649201 I
e hapBur1.JH425491              252157  0 -   1273513 I
e neoBri1.JH422308             3491820  0 -   5414369 I
e araMac1.AOUJ01470298             637  0 -       895 I
e takFla1.KE121866              209731  0 +    220559 I
e fr3.chr10                    9064512  0 +   9126174 I
e ficAlb2.chr4A               19371809  0 +  21182716 I
e anoCar2.chr1               148577473  4 + 263920458 I
e zonAlb1.KB913045            12582000 6532 +  16390125 T
e colLiv1.KB375822             2439586 31 +   2691611 I
e allMis1.JH739658               38113 134 -    691381 I
e falPer1.KB390952             2753956  0 -  18327016 I
e falChe1.KB397350             1707310  0 -   3649919 I
e macEug2.GL124958               26121  0 -     59456 I
e galGal4.chrUn_AADN03023623      2011  0 -      5081 I
e geoFor1.JH740049              182930  0 -   1550430 I
e melGal1.chr7                34310641  0 -  38723565 I
e anaPla1.KB742696             1254472  0 -   1270250 I
e amaVit1.KB277496                3935 1584 -     10329 M
e apaSpi1.KB929104               22324  0 +    818693 I
e cheMyd1.KB605988              134509  0 +    155857 I
e pelSin1.JH211051               23303  0 +    476004 I
e calJac3.chr7                33670343 20 + 155834243 I
e melUnd1.JH556573              751858  2 +  10614383 I
e nomLeu3.chr18               81375947  0 - 104879549 C

a score=8748.000000
s hg38.chr8_KI270814v1_alt      117062 14 +    141812 CCAGCCCTGCCAGC
s panTro4.chr8                55019553 14 + 143986469 CCAGCCCTGCCAGC
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59160125 14 + 153482349 CCAGCCCTGCCAGA
i ponAbe2.chr8               C 0 C 0
s rheMac3.chr8                61687080 14 + 150158102 CCAGCCCTCCAAAC
i rheMac3.chr8               C 0 C 0
s macFas5.chr8                58360985 14 + 146850525 CCAGCCCTCCAAAC
i macFas5.chr8               C 0 C 0
s chlSab2.chr8                53281511 14 + 139301422 TCAGCCCTCCAAGC
i chlSab2.chr8               C 0 C 0
s taeGut2.chr28                3059960  5 +   4963201 ---------GTGCC
i taeGut2.chr28              C 0 C 0
s pseHum1.KB221209            10758139  5 +  11841479 ---------gcggc
i pseHum1.KB221209           C 0 C 0
s amaVit1.KB277496                5569 14 -     10329 CCAGTCCCAGCGGC
i amaVit1.KB277496           M 1584 I 5
s chrPic2.chrUn_KK088237v1     1204821 10 +  22294289 ----CCTCACCTGC
i chrPic2.chrUn_KK088237v1   C 0 I 28
s xenTro7.KB021922               91832 14 +    142779 TCAGGCCGTGCCCC
i xenTro7.KB021922           C 0 C 0
e danRer10.chr19              48218196 5198 -  48790377 I
e ornAna1.Contig1391            115132  0 -    174025 I
e tetNig2.chr10                6379385  0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382  0 -   6649201 I
e hapBur1.JH425491              252157  0 -   1273513 I
e neoBri1.JH422308             3491820  0 -   5414369 I
e araMac1.AOUJ01470298             637  0 -       895 I
e takFla1.KE121866              209731  0 +    220559 I
e fr3.chr10                    9064512  0 +   9126174 I
e ficAlb2.chr4A               19371809  0 +  21182716 I
e anoCar2.chr1               148577473  4 + 263920458 I
e zonAlb1.KB913045            12582000 6532 +  16390125 T
e colLiv1.KB375822             2439586 31 +   2691611 I
e allMis1.JH739658               38113 134 -    691381 I
e falPer1.KB390952             2753956  0 -  18327016 I
e falChe1.KB397350             1707310  0 -   3649919 I
e macEug2.GL124958               26121  0 -     59456 I
e galGal4.chrUn_AADN03023623      2011  0 -      5081 I
e geoFor1.JH740049              182930  0 -   1550430 I
e melGal1.chr7                34310641  0 -  38723565 I
e anaPla1.KB742696             1254472  0 -   1270250 I
e apaSpi1.KB929104               22324  0 +    818693 I
e cheMyd1.KB605988              134509  0 +    155857 I
e pelSin1.JH211051               23303  0 +    476004 I
e calJac3.chr7                33670343 20 + 155834243 I
e melUnd1.JH556573              751858  2 +  10614383 I
e nomLeu3.chr18               81375947  0 - 104879549 C

a score=-56484.000000
s hg38.chr8_KI270814v1_alt      117076 179 +    141812 CTCCACCAAG-GACTCTGCTGCAGCTGTCACCT---GCACATAGGGCTCGGTAA-------CAGAGATGGCAACCCCCA-----ACACTGCC-G----GCCCCACCAGCAG------------------------TGAAAAATACAAG---------GCCAGAGGCTACCA--GG--GCTTCTAATTCAG---GCGGTTGGC-AGGACAGCTGCA-------AGA-----AGGGAACCCGCAGCTGCAGGAAG
s panTro4.chr8                55019567 178 + 143986469 CTCCACCAAG-GACTCTGCTGCAGCTGTCACCT---GCACATAGGGCTCGGTAG-------CAGAGATGGCAACCCCCA-----ACACTGCC-C----GCGCCACCAGCAG------------------------TGAAAAATACAAG---------GCCAGAGGCTACCA--GG--GCTT-TAATTCAG---GAGGTTGGC-AGGACAGCTGCA-------AGA-----AGGGAACCGGCAGCTGCAGGAAG
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59160139 179 + 153482349 CTCCACCAAG-GACTCTGCTGCAGGTGTCACCT---GCACATAGGGCGCGGTAG-------CAGAGATGGCAACCCCCG-----ACACTGCC-C----GCGCCACCAGCAG------------------------TGAAACATACAAG---------GCCAGAGGCTACCA--GG--GCTTCTAATTCAG---GCGGTTGGT-AGGACAGCTTCA-------AGA-----AGGGAACCTGCAGCTGCAGGAAG
i ponAbe2.chr8               C 0 C 0
s rheMac3.chr8                61687094 179 + 150158102 CTCCACCATG-GACTCTGCTGCAGCTGCCACCT---GCACATGTGGCGCGGTAG-------CAGGGGTGGCAACCCCCG-----ACCCTGTC-C----GCGCCACCAGCAG------------------------TGAAAATTACAAG---------GCCAGAGGCTACCA--GG--GCTTCTAATTCAG---GCAGTTGGC-AGGACAGATGCA-------AGA-----AGGGAACCGGTAACTGCAGGAAG
i rheMac3.chr8               C 0 C 0
s macFas5.chr8                58360999 179 + 146850525 CTCCACCATG-GACTCTGCTGCAGCTGCCACCT---GCACATGTGGCGCGGTAG-------CAGGGGTGGCAACCCCCG-----ACCCTGTC-C----GCGCCACCAGCAG------------------------TGAAAAATACAAG---------GCCAGAGGCTACCA--GG--GCTTCTAATTCAG---GCAGTTGGC-AGGACAGATGCA-------AGA-----AGGGAACCGGCAACTGCAGGAAG
i macFas5.chr8               C 0 C 0
s chlSab2.chr8                53281525 179 + 139301422 CTCCACCATG-GACTCTGCTGCAGCTGCCACCT---GCACATGGGGCGCGGTAG-------CAGGGGTGGCAACCCCCG-----ACCCTGTC-C----GCGCCACCAGCAG------------------------TGAAAAATACAAG---------GCCAGAGGCTACCA--GG--GCTTCTAATTCAG---ACAGTTGGC-AGGACAGATGCA-------AGA-----AGGGAACCGGCAGCTGCAGGAAG
i chlSab2.chr8               C 0 C 0
s falChe1.KB397934             1268279 172 -   4640569 CTCTAGCCAG-GAGCTCGCTGCAGGCACCAGGTAGCCCACGCTTAGTGCTGCCG-------CAG-GGTC----------------CCCGGGC-T----TCCCCACCGGGGC------------------------ACAGGGGCACACG------TGGATGGGGACTTGCCT--GGCGGTTCTGCAGGCAG---GGCAACGGT-GCAACAGCAACA-------CCC-----AGCga---ggcagagcctggcca
i falChe1.KB397934           n 0 C 0
s falPer1.KB391026             1265026 172 +   1688145 CTCTAGCCAG-GAGCTCGCTGCAGGCACCAGGTAGCCCACGCTTAGTGCTGCCG-------CAG-GGTC----------------CCCGGGC-T----TCCCCACCGGGGC------------------------ACAGGGGCACACG------TGGATGGGGACTTGCCT--GGCGGTTCTGCAGGCAG---GGCAACGGT-GCGACAGCAACA-------CCC-----AGCGA---GGCAGAGCCTGGCCG
i falPer1.KB391026           n 0 C 0
s taeGut2.chr28                3059965 151 +   4963201 ------CCCG-GGCAGTGAAGCGGG-----ATTTGCCCGTGCACGGCACGACCG-------C---GGTG----------------CTGCGGTGA----GCTCCTTCAGTGC------------------------GGGCGAGGTCACA---------GCTGGGAGCTGCCC--GGCCACACCGGGGCT-----GCCGGTCCC-ACCGGGGCTGCC---------------GGGGC---TGCCG-GCCCCACCA
i taeGut2.chr28              C 0 C 0
s pseHum1.KB221209            10758144 152 +  11841479 ------cctgaggcgccgccgccg------------ccgcacgaggcccgcgcg-------c---gctc----------------ccggggc-c----gccccgcggtcac------------------------gtgcgcgcccccc---------acggtcacgtgtcc--cgccgcgctcgcgcc-----cccgccccg-gcggcggcggcc-------cctCAGGACGGGA---TGTAG-TCCCGGCCG
i pseHum1.KB221209           C 0 C 0
s amaVit1.KB277496                5588 154 -     10329 CTTTA-CCTG-GGCCTTGCCGCCA------------CCTTTCGCCGCCCGGCCGCGGGGACC---GGGG----------------CCACGGC-C----GGCCCATCGTCAC------------------------CCGC-CGTCCCCATC----CAGGCTGGGAGGAGCC----GCCGCCGCGGAGCT-----GCCTTCGCC-ATGGCCGGCGCA---------------GGAGC---CGCAA----CGGGTA
i amaVit1.KB277496           I 5 C 0
s chrPic2.chrUn_KK088237v1     1204859 173 +  22294289 ctctctccca-gggctgacagcAG-------------CGTCCGCAAGCCCACAA-------CGGTGATC----------------CCCGGGT-T----TGCAGACAAATCC------------------------A-GCGAGACCAAAGCTGGACAAACCGGGAGGCACCTGGGGCCAAGAGGGAACAAGTGAGCCAAACAG-CCCCCAGCCTCACTCTTCCCCC-----CACAA---TGCAT----tgcaca
i chrPic2.chrUn_KK088237v1   I 28 C 0
s xenTro7.KB021922               91846 213 +    142779 CTGTGGCACA-ATCAGTGGGGGGGCAATCAGCT---CCACTTGGCACCGTGCCG-------CTCTCACACCAACCCCCAGAACCGCCGGGCC-CAGAAGCACCGCCAGCAGCTTCCCCTTCTTCACTGGTTTCCATGGTGAGCGCCAG------------GGGGGGCGGCA--GGC-GTTTCTCAGGCGGCT-GTAATTGGCTAGTGTAGCTGGG-------AGG-----GAGGGGCCCCGGGCCCCGGAGAG
i xenTro7.KB021922           C 0 N 0
e danRer10.chr19              48218196 5198 -  48790377 I
e ornAna1.Contig1391            115132   0 -    174025 I
e tetNig2.chr10                6379385   0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382   0 -   6649201 I
e hapBur1.JH425491              252157   0 -   1273513 I
e neoBri1.JH422308             3491820   0 -   5414369 I
e araMac1.AOUJ01470298             637   0 -       895 I
e takFla1.KE121866              209731   0 +    220559 I
e fr3.chr10                    9064512   0 +   9126174 I
e ficAlb2.chr4A               19371809   0 +  21182716 I
e anoCar2.chr1               148577473   4 + 263920458 I
e zonAlb1.KB913045            12582000 6532 +  16390125 T
e colLiv1.KB375822             2439586  31 +   2691611 I
e allMis1.JH739658               38113 134 -    691381 I
e macEug2.GL124958               26121   0 -     59456 I
e galGal4.chrUn_AADN03023623      2011   0 -      5081 I
e geoFor1.JH740049              182930   0 -   1550430 I
e melGal1.chr7                34310641   0 -  38723565 I
e anaPla1.KB742696             1254472   0 -   1270250 I
e apaSpi1.KB929104               22324   0 +    818693 I
e cheMyd1.KB605988              134509   0 +    155857 I
e pelSin1.JH211051               23303   0 +    476004 I
e calJac3.chr7                33670343  20 + 155834243 I
e melUnd1.JH556573              751858   2 +  10614383 I
e nomLeu3.chr18               81375947   0 - 104879549 C

a score=23646.000000
s hg38.chr8_KI270814v1_alt      117255 28 +    141812 AGAACCTGGCGGCCACACAGTTCCCAGC
s panTro4.chr8                55019745 28 + 143986469 AGAACCTGGCGGCCACACAGTTTCCAGC
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59160318 28 + 153482349 AGAACCTGGCGGCCACACAGTTCCCAGC
i ponAbe2.chr8               C 0 C 0
s rheMac3.chr8                61687273 28 + 150158102 AGAACCTGGCGGCCACACAGTTCCCAGC
i rheMac3.chr8               C 0 C 0
s macFas5.chr8                58361178 28 + 146850525 AGAACCTGGCGGCCACACAGTTCCCAGC
i macFas5.chr8               C 0 C 0
s chlSab2.chr8                53281704 28 + 139301422 AGAACCTGGTGGCCACACAGTTCCCAGC
i chlSab2.chr8               C 0 C 0
s falChe1.KB397934             1268451 26 -   4640569 gGGACACTGCTGc--gggtgctgccagc
i falChe1.KB397934           C 0 C 0
s falPer1.KB391026             1265198 26 +   1688145 GGGACACTGCTGc--gggtgctgccagc
i falPer1.KB391026           C 0 C 0
s taeGut2.chr28                3060116 17 +   4963201 GGGCTT-----------GGGAGCTCAGT
i taeGut2.chr28              C 0 C 0
s pseHum1.KB221209            10758296 24 +  11841479 GGGGCGCGGCG----GAGGGATCCCCGC
i pseHum1.KB221209           C 0 C 0
s amaVit1.KB277496                5742 15 -     10329 GAGC-------------GCGCTCCCGGC
i amaVit1.KB277496           C 0 C 0
s chrPic2.chrUn_KK088237v1     1205032 27 +  22294289 cagccctgcccacT-CGTGGCCCCCAGG
i chrPic2.chrUn_KK088237v1   C 0 C 0
e danRer10.chr19              48218196 5198 -  48790377 I
e ornAna1.Contig1391            115132  0 -    174025 I
e tetNig2.chr10                6379385  0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382  0 -   6649201 I
e hapBur1.JH425491              252157  0 -   1273513 I
e neoBri1.JH422308             3491820  0 -   5414369 I
e araMac1.AOUJ01470298             637  0 -       895 I
e takFla1.KE121866              209731  0 +    220559 I
e fr3.chr10                    9064512  0 +   9126174 I
e ficAlb2.chr4A               19371809  0 +  21182716 I
e anoCar2.chr1               148577473  4 + 263920458 I
e zonAlb1.KB913045            12582000 6532 +  16390125 T
e colLiv1.KB375822             2439586 31 +   2691611 I
e allMis1.JH739658               38113 134 -    691381 I
e macEug2.GL124958               26121  0 -     59456 I
e galGal4.chrUn_AADN03023623      2011  0 -      5081 I
e geoFor1.JH740049              182930  0 -   1550430 I
e melGal1.chr7                34310641  0 -  38723565 I
e anaPla1.KB742696             1254472  0 -   1270250 I
e apaSpi1.KB929104               22324  0 +    818693 I
e cheMyd1.KB605988              134509  0 +    155857 I
e pelSin1.JH211051               23303  0 +    476004 I
e calJac3.chr7                33670343 20 + 155834243 I
e melUnd1.JH556573              751858  2 +  10614383 I
e nomLeu3.chr18               81375947  0 - 104879549 C

a score=-105965.000000
s hg38.chr8_KI270814v1_alt      117283  87 +    141812 ---------------GCCCACGACCCGGGG-CTCAG------GGCGCGGGAGAA--AG-------------------AGGAGCTGACCGTAGGGTGGGAGGGAG-GTG-CACTCG--GCGACCCTCAGGCTTTC-----------
s panTro4.chr8                55019773  87 + 143986469 ---------------GCACACGACCCGGAG-CTCAG------GGCGCGGGAGAA--AG-------------------AGGAGCTGACCGTAGGGTGGGAGGGAG-GTG-CACTCG--GCGACCCTCAGGCTTTC-----------
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59160346 106 + 153482349 ---------------GCCCACGACCCGGGG-CTCAG------TGCGCGGGAGAA--AGGAGCTGACAGTAGGGTGAAAGGAGCTGACAGTAGGGTGGGAGGGAG-GTG-CACTCG--GCCACCCTCAGGCTTTC-----------
i ponAbe2.chr8               C 0 C 0
s nomLeu3.chr18               81375947  89 - 104879549 ---------------GCCTGCAAACCAGCG-CTCAG------GGCGCGAGCCAA--GG-------------------AAGAGCAGGGCCTAGAGTGGGAGGGCGTGTGCCACACG--GCGACCCTCAGGCCGTC-----------
i nomLeu3.chr18              C 0 C 0
s rheMac3.chr8                61687301  87 + 150158102 ---------------GTTCGCGACCCGGGG-CTCAG------GGCGCGGGACAA--AG-------------------AGGAGCGGACCCTAGGGAGGGAGGGCG-GTG-CTCCCA--GCGATCCTCAGGCTCTC-----------
i rheMac3.chr8               C 0 C 0
s macFas5.chr8                58361206  87 + 146850525 ---------------GTTCGCGACCCGGGG-CTCAG------GGTGTGGGACAA--AG-------------------AGGAGCGGACCCTAGGGAGGGAGGGCG-GTG-CTCTCG--GCGATCCTCAGGCTCTC-----------
i macFas5.chr8               C 0 C 0
s chlSab2.chr8                53281732  85 + 139301422 ---------------GCTCGCGACCCGGGG-CTCAG------G--GAGGGACAA--AG-------------------ACGAGCGGACCTTAGGGAGGGAGGGCG-GTG-CTCTCG--GCGACCCTTAGGCTTTC-----------
i chlSab2.chr8               C 0 C 0
s falChe1.KB397934             1268477  99 -   4640569 a------------cagccagc--aatGGCG-CAAGG------GGAGCAGGACCC--GC-------------------CCTGCCTTGCCATGGGGTAGGAAGGGG-ATA-TCCTGG--GGACACCACAGGCTTCTTGGGGCCAGGC
i falChe1.KB397934           C 0 C 0
s falPer1.KB391026             1265224  99 +   1688145 a------------cagccagc--aatGGCG-CAAGG------GGAGCAGGACCC--GC-------------------CCTGCCTTGCCATGGGGTAGGAAGGGG-ATA-TCCTGG--GGACACCACAGGCTTCTTGGGGCCAGGC
i falPer1.KB391026           C 0 C 0
s taeGut2.chr28                3060133  59 +   4963201 GCTAAAAGAGGTCCAG---AC--CCGGGTGTTGGGG------TGTGGGGGTTCC--GC-------------------AGGGCT------------------------------------------CAG------------CTGTT
i taeGut2.chr28              C 0 C 0
s pseHum1.KB221209            10758320  65 +  11841479 G-----------CCGG---AC--CCAGCCG-CAGGG------CGCGGCGCCTCCTAGC-------------------GGGACC-------GGGGTAG----------a-tcc--------cgccgccg------------ccgcc
i pseHum1.KB221209           C 0 C 0
s amaVit1.KB277496                5757  64 -     10329 G------GAGGCACAGCTCGC--TCCGGCGTCATAAGCCCTCTGTGACGCTCCC-AGC-------------------GCGCTC-----------------------------------------ACCG------------CAAAT
i amaVit1.KB277496           C 0 C 0
s chrPic2.chrUn_KK088237v1     1205059  87 +  22294289 G-----------ACGG---AC--CCAGCAG------------CGCACAGGCCCCCAGc-------------------ggagga--gatgggggggaggggcgtc-aCT-TCCAGGTAGGACCCAGCAG-------AGGGAAGCTC
i chrPic2.chrUn_KK088237v1   C 0 C 0
e danRer10.chr19              48218196 5198 -  48790377 I
e ornAna1.Contig1391            115132   0 -    174025 I
e tetNig2.chr10                6379385   0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382   0 -   6649201 I
e hapBur1.JH425491              252157   0 -   1273513 I
e neoBri1.JH422308             3491820   0 -   5414369 I
e araMac1.AOUJ01470298             637   0 -       895 I
e takFla1.KE121866              209731   0 +    220559 I
e fr3.chr10                    9064512   0 +   9126174 I
e ficAlb2.chr4A               19371809   0 +  21182716 I
e anoCar2.chr1               148577473   4 + 263920458 I
e zonAlb1.KB913045            12582000 6532 +  16390125 T
e colLiv1.KB375822             2439586  31 +   2691611 I
e allMis1.JH739658               38113 134 -    691381 I
e macEug2.GL124958               26121   0 -     59456 I
e galGal4.chrUn_AADN03023623      2011   0 -      5081 I
e geoFor1.JH740049              182930   0 -   1550430 I
e melGal1.chr7                34310641   0 -  38723565 I
e anaPla1.KB742696             1254472   0 -   1270250 I
e apaSpi1.KB929104               22324   0 +    818693 I
e cheMyd1.KB605988              134509   0 +    155857 I
e pelSin1.JH211051               23303   0 +    476004 I
e calJac3.chr7                33670343  20 + 155834243 I
e melUnd1.JH556573              751858   2 +  10614383 I

a score=-129022.000000
s hg38.chr8_KI270814v1_alt      117370 546 +    141812 TGGGACCAGGCC---TCCCAG-------CCTCCGCC-TGGGCTCAGCTGCAG------------CT-GCCACCTGCACA---TGGCGCGCGGCAGCACAGATGGCAATCCAATACCCTGCCCGCACCACCAGCC-----CTGGA--CCCCAGGGAGAGACATTGCCACTTCAACTAATTCAGGTGGT---CCGTGCCGCAGCTGTCG---------------------GAGGATGGGAACCGGTGCTCAGCCC-----------------------------------------CATCCCAGTGG---CTGC-----------------ACAG------TGCCCAGGACCCACGACGCGGAGCTCTCGGAGCTGGCCAA--GATTCCATATC---------GGACCCTATGGTGAAAGGGCCATG--------CAGTCGGTG-ACATTCAGGACGTCTGGGACCAGCCCAGTCGATCTCCCCCATGGGCT---CAGTTGCAGC-----TGC-----CACCTGCACAAGGCACC-CTGCAGCAGCGG-----TGGCAACCGCTGCCCTGCCCA--------------CTGCCACCACCAATGAGGATCCCAGGGTCGGCCGCATAATTCACCCGGTGGGCCCTGCA-------------GCTTCAGGA-----------GAGTGAGAAAG---------------------GTCCACTCAGCCCCATCCCGGTTGCTGCATATTG-----------CCCAGCTCCCAGGACCTCACACTCT
s panTro4.chr8                55019860 546 + 143986469 TGGGACCAGGCC---TCCCAG-------CCTCCGCC-TGGGCTCAGCTGCAG------------CT-GCCACCTGCACA---TGGCGCACGGCAGCACAGATGGCAATCCAATACCCTGCCCGCACCACCAGCC-----CTGGA--CCCCAGGGAAAGACACTGCCACTTCAACTAATTCAGGCGGT---CCGTGCCGCAGCTGCCG---------------------GAGGATGGGAACCGGTGCTCAGCCC-----------------------------------------CATCCCAGTGG---CTGC-----------------ACAG------TGCCCAGGACCCATGACGCCGAGCTCTCGGAGCTGGCCAA--GATTCCATATC---------GGACCCTATGATGAAAGGGCCATG--------CAGTCGGTG-ACATTCAGGACCTCTGGGACCAGCCCAGTCAATCTCCACCATGGGCA---CAGTTGCAGC-----TGC-----CACCTGCACATGGCACC-CTGCAGCAGCGG-----TGGCAACCGCTGCCCTGCCCA--------------CTGCCACCACCAATGAGGATCCCAGGGTCGGCCGCATAATTCACCCGGTGGGCCCTGCA-------------GCTTCAGGA-----------GAGTGAGAAAT---------------------GTCCACTCAGCCCCATCCCGGTTGCTGCATATTG-----------CCCAGCTCCCAGGACCTCACACTCT
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59160452 546 + 153482349 TGGGATCAGGCC---TCCGAG-------CCTCCGCC-TGGGCTCAGCTGCAG------------CT-GCCACCTGCATA---TGGCACGCGGCAGCACAGATGGCAATCCAATACCCTGCCCGCACCACCAGTC-----CCGGA--CGCCAGGGAGAGACACTGCTACTGCGACTAATTCAGGCGGT---CCGTGCTGCAGCTGCGG---------------------GAGGATGGGAACCGGTGCTCAGCCC-----------------------------------------CATCCCAGTGG---CTGT-----------------ACAG------TGCCCAGGACCCACGACGCCGAGCTCTCGGAGCTGGCCAA--GATTCCGTATC---------GGATCCTATGGTGAAAGGGCCATG--------CAGTCGGTG-ACATTCAGGATGTCTGGGACCAGCCCAGTCGATCTCCCCCATGGGCT---CAGTTGCAGC-----TGC-----CACCTGAACATGGCACC-CTGCAGCAGCGG-----TGGCAGCCCTTGCCCTGCCCG--------------CTGCCACCACCAATGAGGATCCCAGGGTCGGCCGCCTAATTCACCCGGTGGGCCCTGCA-------------GCTGCAGGA-----------GAGTGAGAAAT---------------------GTCCACTCAGCCCCATCCTGGTTGCTGCATATTG-----------CCCAGCTCCCAGGACCTCACACTCT
i ponAbe2.chr8               C 0 C 0
s rheMac3.chr8                61687388 588 + 150158102 TGAGACCAGGCC---TGCCAG-------CCTCCGCCGTGGGCTCAGCTGCAG------------CT-GCCACCTGCACA---TGGCGTGCGGCAGCACAGATGGCAATCCAATACCCTGCCCGCACCACCAGCC-----CCGGA--CCCCAGGGAGAGACGCTGCCACTTGGATTAATTCAGGCGAT---CGGTGCTGTAGCAACGG---------------------TAGGATGAGAACCCGTGCTCAGCCCCATCCCAGTGGCTGCACGAGGATGAGAACCGGTGCTCAGCGCATCCCAGTGG---CTGC-----------------ACAG------TGCTCAGAACCCTCGACGCCGAGCTCTCGGAACTGGCCAG--GATTCCATATC---------TGACCCTATGGTGAAAGGGCCATG--------CAGTCGGTG-ACGTTCAGGACGTCTGGGACCAGCCCAGTCGATCTCCGCCATGGGCT---CAGTTGCAGC-----TGC-----CACCTGCACATGGCATC-CTGCAGCAGCGG-----TGGCAACCCCCGCCCTGCCCG--------------CTGCCACCACCAATGCAGAACCCAGGGTCGGGCGCTTAATTCATGCGGTCGGCCCGGCA-------------GCTGCAGGA-----------GAGTGAGAAAT---------------------GTCAACTCAGCCCCATTCTGGTTGCTGCATATTG-----------TCCAGCTCCCAGGACCTCACACTCT
i rheMac3.chr8               C 0 C 0
s macFas5.chr8                58361293 547 + 146850525 TGAGACCAGGCC---TGCCAG-------CCTCCGCCGTGGGCTCAGCTGCAG------------CT-GCCACCTGCACA---TGGCGTGCGGCAGCACAGATGGCAATCCAATACCCTGCCCGCACCACCAGCC-----CCGGA--CCCCAGGGAGAGACGCTGCCCCTTGGATTAATTCAGGCGAT---CGGTGCTGTAGCAACGG---------------------GAGGATGAGAACCGGTGCTCAGCCC-----------------------------------------CATCCCAGTGG---CTGC-----------------ACAG------TGCTCAGAACCCTCGACGCCGAGCTCTCGGAACTGGCCAG--GATTCCATATC---------TGACCCTATGGTGAAAGGGCCATG--------CAGTCGGTG-ACGTTCAGGACGTCTGGGACCAGCCCAGTCGATCTCCGCCATGGGCT---CAGTTACAGC-----TGC-----CACCTGCACATGGCATC-CTGCAGCAGCGG-----TGGCAACCCCCGCCCTGCCCG--------------CTGCCACCACCAATGCAGAACCCAGGGTCGGGCGCTTAATTCATGCGGTCGGCCCGGCA-------------GCTGCAGGA-----------GAGTGAGAAAT---------------------GTCAACTCAGCCCCATTCTGGTTGCTGCATATTG-----------TCCAGCTCCCAGGACCTCACACTCT
i macFas5.chr8               C 0 C 0
s chlSab2.chr8                53281817 547 + 139301422 TGAGACCAGGCC---TGCCAG-------CCTCCGCCGTGGGCTCAGCTGCAG------------CT-GCCACCTGCACA---TGGCGTGCGGCAGCACAGATGGCAATCCAATACCCTGCCCGCACCACCAGCC-----TCGGA--CCCCAGGGAGAGACGCTGCCCTTTGGATTAATTCAGGCGGT---CGGTGCCACAGCTGCAG---------------------GAGGATGAGAACCGGTGCTCAGCCC-----------------------------------------CATCCCAGGGG---CTGC-----------------ATAG------CGCTCAGAACCCATGACGCTGAGCTCTTGGAACTGGCCAG--GATTCCGTGTC---------TGACCCTATGGTGAAAGGACCATG--------CAGTCGGTG-ACGTTCAGGACATCTGGGACCAGCCCAGTCGATCTCCGCCATCGGCT---CAGTTGCAGC-----TGC-----CATCTGCACATGGCATC-CTGCAGCAGCGA-----TGGCAACCCCCACCCTGCCCG--------------CTGCCACAACCAATGCAGAACCCAGGGTCGGGCGCTTAATTCACACGGTCGGCCCTGCA-------------GCTGCAGGA-----------GAGAGAGAAAT---------------------GTCAACTCAGCCCCATTCTGGTTGCTGCATATTT-----------TCCAGCTCCCAGGACCTCACGCTCT
i chlSab2.chr8               C 0 C 0
s falChe1.KB397934             1268576 526 -   4640569 AGGATGCCAGCCCATGTCCCG-------TCCCCGGG-CAGGTGCTGCCGTGGCCAGGGTTGGGGCT-CCACGCCGCGGG---GAGGGCGCGGT-GCTTACCCAGCTGTTTGATGCCTTCCTTGTC--CTCGATGAGGAGCTGGA--CCCGAGGGA----------TGTCTATGTGCAGTCGGGGGCCCTGCGGGGGACCCTTCACCG---------------------GCGTGTCAAAGCTG-CGGTTATTCT-----------------------------------------TGCTGTGAGGT---AAG--------------------AG------GG------------GACGC---AGACCCGGCGATTACCGGAGAGAGCCTCAGC---------AGCTCAagcctggcaggggctggg----------gcttgCC-ACCAGCCAG-------------------------CCCACCCGGGGCT---CAGCT----------GTC-----CCCCAG---GTGAGCTC-CAGTGTGGGTGA-----CAGGACCCTCCAGCAGGCAGA-------------------AGCACCA-----------------GGCTGCCGTGCTACAGTGGCCAACACAACC-------TTCACAGGTCTGAGA---CAAGTCATCAGGGCTGAACCTGAGCTTAAAAGCATCTAGGATCACCCCCGCCA--GCCAGCATTCCCCACCCACCGCCCACCACCCGCAGCTCAGAGACCCACCTGATCA
i falChe1.KB397934           C 0 I 26
s falPer1.KB391026             1265323 526 +   1688145 AGGATGCCAGCCCATGTCCCG-------TCCCCGGG-CAGGTGCTGCCGTGGCCAGGGTTGGGGCT-CCACGCTGCAGG---GAGGGCGCGGT-GCTTACCCAGCTGTTTGATGCCTTCCTTGTC--CTCGATGAGGAGCTGGA--CCCGAGGGA----------TGTCTATGTGCAGTCGGGGGCCCTGCGGGGGACCCTTCACCG---------------------GCGTGTCAAAGCTG-CGGTTATTCT-----------------------------------------TGCTGTGAGGT---AAG--------------------AG------GG------------GACGC---AGACCCGGCGATTACCGGAGAGAGCCTCAGC---------GGCTCaagcctggcaggggctggg----------gcttgCC-ACCAGCCAG-------------------------CCCACCCGGGGCT---CAGCT----------GTC-----CCCCAG---GTGAGCTC-CAGTGTGGGTGA-----CAGGACCCTCCAGCAGGCAGA-------------------AGCACCA-----------------GGCTGCCGTGCTACAGTGGCCAACACAACC-------TTCACAGGTCTGAGA---CAAGTCATCAGGGCTGAACCTGAGCTTAAAAGCATCTAGGATCACCCCCGCCA--GCCAGCATTCCCCACCCACCGCCCACCACCCGCAGCTCAGAGACCCACCTGATCA
i falPer1.KB391026           C 0 I 26
s taeGut2.chr28                3060192 513 +   4963201 A-GGTGCTGATC---CCCTCGGT---GGTTTCCAGT-GGGGCACAGCAGAGA-TGAGCTGCTGGCAGCCTCACGGTGCCTTGGAGGGCTC-------------------------------------------------CCGGC--CCCAAGGG---------------AAGGGGAGCAAGGGGGCT------GAGCCTGTTTGCCA---------------------GGATTTCAGGGCTC-TGCCTGTCCA-----------------------------------------TACCCTGGGAT---CTGT----CCCGAGGTGCT--TTGG------GTGCAGACCCCAGTGCTGCCCACACCCCAGTGCCAATCACGGTGAGCCCCAGT---------GCTCCCCATGCCGTATGTCCCTGCTGGGGATGTGCCTTGTC-CCCTGTGGGGGATCTGGTGGACG---------TCTCTCCCCAGGCCCTGTTATCTTTGGGCGTGAGTC-----CACCG------GTATCCGCTGCCTGCAGGGCCGGGCAGGGCTATCGGTTGGGCAGG---------------------CCCCT----------------------TCCCCCTCCAGCAGCAGGCCCAGCCGCCCTATCTCATTAGCTCGAGA----------TTAATGAGGCTCCTGCGCT-----GTCTTTA-ACTCCTTCCTGCTC--GCCAGCTCCTGCC-----------------CACAGCTCCACTGACCCTCTGCTCT
i taeGut2.chr28              C 0 I 74
s pseHum1.KB221209            10758385 521 +  11841479 atggccgcggcc---gccccggt---gcgccccgcg-ggggcccccccgcgg-cggggccgtgtca-ccgcccggtgcc---gcgggcgcggc------------------------------------------ggggccggt--ccc--------------------accgggacccccggggct-------cccccgccccccc---------------------ggggcgcggccccc-tcccctccc-------------------------------------------gccGGACAAT---GAGT----CCCG-TATGCTAATGAG------GGTCTGGCGTCACTTCCGCTCTTTCTCGGCCGCCATC-----TTGGCCCGGGC---------AGGCTCTGGGCAGCGGGACCCGGC--------TGTATTGTC------TGAGGggcccgggcgctg---------cccccgcccgcgccc---ccgccccgggcacccggcccagtcaccg------ccgccc-ccgcccccggggccgctccgcaccgcccgccccgcacactgcaccccccccgtcatttcccccttt-------------------gtctcccccgcgccgccggcggctccgctccgcccgcccgccccgggaccgggcggcgccggggagggtccggcg----------------gccccccccgccccagcccGCCCTCGCTG------------CGAGGAGAGCCCGGTCAGGTAGGTGC---
i pseHum1.KB221209           C 0 C 0
s amaVit1.KB277496                5821 491 -     10329 AGGGAGGGGAAC-AGGCCTCGGA---G---CCCAGT-GCTGTCGAGCAGCGG-CAG--------CG-GTTCGCGGATCT---CGACGCTC-------------------------------------------------CCAGC--CCCAAGCGC----------CCTCACCACCCTCTCCCTTCCT------GCGGCCGCTCACCCCGGGA----------------CGGGCTGTGCCCTC-CCCTTGTCCC-----------------------------------------TGCCGCAGCATGCAGGGG----CTCGGTGAACTCGTCAGAAAGCAGGACAGTAGCAAGTGGCAC---AGCGCTGCCGCCAGC-----GGGGACCTGgcccagctgcaggagctcGCGTCGCGGGATCCACC----------CCTTATCAACCAGCGGGACGCGCGAAGGCGG---------TAACGG-GCGGGCAA---TGCCCGCAGCAAAACGTC-----CACC---------CTCC-CTGGCTGGAAGAGC---CAGAAAAGCCCGTCACGCTAG-------------GTCGAAAGCACCTGTGGAG-----------GGGGGCCGACTCCACAGCGCTGGCCTTACC-CTAGCCCTGCGCAAGCTGGGA-----------CAGGAGGCGGCAGATG----------------CTTCGCCCtaccctgccctgctct---------------------gccagcct-----------------
i amaVit1.KB277496           C 0 C 0
s chrPic2.chrUn_KK088237v1     1205146 523 +  22294289 AGAGTTCAGGCT-----CCCAGTTCAGCTCCACATC-ACAGCCCCTCCCAGG-CAGCGGCACACCC-ATACCCCACAAC------CGTCCGCC-CCCTAGCAAACCCCCAGGCCTTTACCTGGCCAGCTCGGCAACAGCCTTGTCGCTCAGGTGG----------TTCCCAGACATAGTCAGGTGGG---TGAGAGCACATCCCTCCTGGAAGGGAACAGAGGGGAACTGATCCCAAAGCCA-CAGCCCAGCT-----------------------------------------CAACAGGGCAG---AGGCTAAACCCTCCTTGCAAGCCAA------GGCCTGGA------GCCGC-------TGAACGCCT-------GAGATCCCCAT---------GGCCCCAGAGAACCAGGAGCACCA----------GATGGTC-ACGCTCCCGAGGAAGGACAGCAT---------GATCCGCCTCAGCCC---CACAGAGGGACCTTGTGC-----CTCTG-------------CAGCGTGGGGG------CTGAGGCCCCTGGC---CAGA-------------------GCCATGT----------------------TCGGCCCAC--------GCACAGTG-------CTGCACTTCCTGGAG----------CCAGTGAAGGGTTacagca--------------gccccccctccccctgcctggggccc-------------------aTTACCTGCGTCAGGTACCTGACCA
i chrPic2.chrUn_KK088237v1   C 0 I 3
e danRer10.chr19              48218196 5198 -  48790377 I
e ornAna1.Contig1391            115132   0 -    174025 I
e tetNig2.chr10                6379385   0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382   0 -   6649201 I
e hapBur1.JH425491              252157   0 -   1273513 I
e neoBri1.JH422308             3491820   0 -   5414369 I
e araMac1.AOUJ01470298             637   0 -       895 I
e takFla1.KE121866              209731   0 +    220559 I
e fr3.chr10                    9064512   0 +   9126174 I
e ficAlb2.chr4A               19371809   0 +  21182716 I
e anoCar2.chr1               148577473   4 + 263920458 I
e zonAlb1.KB913045            12582000 6532 +  16390125 T
e colLiv1.KB375822             2439586  31 +   2691611 I
e allMis1.JH739658               38113 134 -    691381 I
e macEug2.GL124958               26121   0 -     59456 I
e galGal4.chrUn_AADN03023623      2011   0 -      5081 I
e geoFor1.JH740049              182930   0 -   1550430 I
e melGal1.chr7                34310641   0 -  38723565 I
e anaPla1.KB742696             1254472   0 -   1270250 I
e apaSpi1.KB929104               22324   0 +    818693 I
e cheMyd1.KB605988              134509   0 +    155857 I
e pelSin1.JH211051               23303   0 +    476004 I
e calJac3.chr7                33670343  20 + 155834243 I
e melUnd1.JH556573              751858   2 +  10614383 I
e nomLeu3.chr18               81376036   0 - 104879549 C

a score=-9530.000000
s hg38.chr8_KI270814v1_alt      117916 50 +    141812 GTGCGTGGGACAAAAAAAG-----------------------AGTGGAACCTGGGGTTGGAGGGATGTACACT
s panTro4.chr8                55020406 49 + 143986469 GTGCGTGGGAC-AAAAAAG-----------------------AGTGGAACCTGGGGTTGGAGGGATGTACACT
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59160998 49 + 153482349 GTGCGTGGGAC-AAAAAAG-----------------------AGTGGAACCTGGGGTTGGAGGGATGAACACT
i ponAbe2.chr8               C 0 C 0
s rheMac3.chr8                61687976 49 + 150158102 GTGCGTGGGCC-AACAAAG-----------------------AGTGGAACCTGGGGTTGGAGGGAGGTACACT
i rheMac3.chr8               C 0 C 0
s macFas5.chr8                58361840 49 + 146850525 GTGCGTGGGCC-AACAAAG-----------------------AGTGGAACCTGGGGTTGGAGGGAGGTACACT
i macFas5.chr8               C 0 C 0
s chlSab2.chr8                53282364 48 + 139301422 GTACATGGGCC-AACAAAG-----------------------AGTGGAACCTGGGGTC-GATGGAGGTACACT
i chlSab2.chr8               C 0 C 0
s falChe1.KB397934             1269128 67 -   4640569 GTGCAAGAGa--cacaaacaacaacaataaaatttttttttgagagagcTCT----TTAGGGCGTCATGAGCT
i falChe1.KB397934           I 26 I 10
s falPer1.KB391026             1265875 67 +   1688145 GTGCAAGAGa--cacaaacaacaacaataaaatttttttttgagagagcTCT----TTAGGGCGTCATGAGCT
i falPer1.KB391026           I 26 I 10
s pseHum1.KB221209            10758906 40 +  11841479 GAGCGCGGGTC-CGCGG--TGCGACCCGGGC-----------GGGGAC------------AGcgcc-------
i pseHum1.KB221209           C 0 C 0
s amaVit1.KB277496                6312 50 -     10329 ggtcatggaat-cacagaataccagaTTAGA-----------AGGGACCTC--------GAGGGTCAT---CT
i amaVit1.KB277496           C 0 I 8
s chrPic2.chrUn_KK088237v1     1205672 36 +  22294289 ----------------------------------GCTCCACGAGAGGCTCCTCCGGCCGGGCAGCCATCG---
i chrPic2.chrUn_KK088237v1   I 3 C 0
e danRer10.chr19              48218196 5198 -  48790377 I
e ornAna1.Contig1391            115132  0 -    174025 I
e tetNig2.chr10                6379385  0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382  0 -   6649201 I
e hapBur1.JH425491              252157  0 -   1273513 I
e neoBri1.JH422308             3491820  0 -   5414369 I
e araMac1.AOUJ01470298             637  0 -       895 I
e takFla1.KE121866              209731  0 +    220559 I
e fr3.chr10                    9064512  0 +   9126174 I
e ficAlb2.chr4A               19371809  0 +  21182716 I
e anoCar2.chr1               148577473  4 + 263920458 I
e zonAlb1.KB913045            12582000 6532 +  16390125 T
e colLiv1.KB375822             2439586 31 +   2691611 I
e allMis1.JH739658               38113 134 -    691381 I
e macEug2.GL124958               26121  0 -     59456 I
e galGal4.chrUn_AADN03023623      2011  0 -      5081 I
e geoFor1.JH740049              182930  0 -   1550430 I
e melGal1.chr7                34310641  0 -  38723565 I
e anaPla1.KB742696             1254472  0 -   1270250 I
e apaSpi1.KB929104               22324  0 +    818693 I
e cheMyd1.KB605988              134509  0 +    155857 I
e pelSin1.JH211051               23303  0 +    476004 I
e calJac3.chr7                33670343 20 + 155834243 I
e melUnd1.JH556573              751858  2 +  10614383 I
e taeGut2.chr28                3060705 74 +   4963201 I
e nomLeu3.chr18               81376036  0 - 104879549 C

a score=29498.000000
s hg38.chr8_KI270814v1_alt      117966 19 +    141812 AAGCGACCCT----CAGCTGTGT
s panTro4.chr8                55020455 19 + 143986469 AAGCGACCCT----CAGCTGTGT
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59161047 19 + 153482349 AAGCGACCCT----CAGCCGTGT
i ponAbe2.chr8               C 0 C 0
s rheMac3.chr8                61688025 19 + 150158102 AAGCGACCCT----CAGCCATGT
i rheMac3.chr8               C 0 C 0
s macFas5.chr8                58361889 19 + 146850525 AAGCGACCCT----CAGCCATGT
i macFas5.chr8               C 0 C 0
s chlSab2.chr8                53282412 19 + 139301422 AAGCGACCCT----CAGCCATGT
i chlSab2.chr8               C 0 C 0
s falChe1.KB397934             1269205 19 -   4640569 AGGCACAGCT----CCGTGGTCC
i falChe1.KB397934           I 10 I 7
s falPer1.KB391026             1265952 19 +   1688145 AGGCACAGCT----CCGTGGTCC
i falPer1.KB391026           I 10 I 7
s taeGut2.chr28                3060779 23 +   4963201 AGGGGACCCTGAGGCTGCCACCC
i taeGut2.chr28              I 74 I 7
s pseHum1.KB221209            10758946 19 +  11841479 cgaccgcccc----ctgcctccc
i pseHum1.KB221209           C 0 I 10
s amaVit1.KB277496                6370 19 -     10329 AGTCAATTTT----CTGTGGCGC
i amaVit1.KB277496           I 8 I 20
s chrPic2.chrUn_KK088237v1     1205708 19 +  22294289 AGCCGATCTC----CAGCTGGCT
i chrPic2.chrUn_KK088237v1   C 0 I 7
e danRer10.chr19              48218196 5198 -  48790377 I
e ornAna1.Contig1391            115132  0 -    174025 I
e tetNig2.chr10                6379385  0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382  0 -   6649201 I
e hapBur1.JH425491              252157  0 -   1273513 I
e neoBri1.JH422308             3491820  0 -   5414369 I
e araMac1.AOUJ01470298             637  0 -       895 I
e takFla1.KE121866              209731  0 +    220559 I
e fr3.chr10                    9064512  0 +   9126174 I
e ficAlb2.chr4A               19371809  0 +  21182716 I
e anoCar2.chr1               148577473  4 + 263920458 I
e zonAlb1.KB913045            12582000 6532 +  16390125 T
e colLiv1.KB375822             2439586 31 +   2691611 I
e allMis1.JH739658               38113 134 -    691381 I
e macEug2.GL124958               26121  0 -     59456 I
e galGal4.chrUn_AADN03023623      2011  0 -      5081 I
e geoFor1.JH740049              182930  0 -   1550430 I
e melGal1.chr7                34310641  0 -  38723565 I
e anaPla1.KB742696             1254472  0 -   1270250 I
e apaSpi1.KB929104               22324  0 +    818693 I
e cheMyd1.KB605988              134509  0 +    155857 I
e pelSin1.JH211051               23303  0 +    476004 I
e calJac3.chr7                33670343 20 + 155834243 I
e melUnd1.JH556573              751858  2 +  10614383 I
e nomLeu3.chr18               81376036  0 - 104879549 C

a score=-108862.000000
s hg38.chr8_KI270814v1_alt      117985 134 +    141812 GGGACCAGCC---CTGC----------------CA---A------------------------------------CTTCCAT-----------CGTGGGCTCAGCT-------GCAGCT-----------------------GCCACCTGCACACGG-------TGCGGGGAAG-----CAGTGATGGCAACCTTTCACCGTGCCCACGCCACCAGCAGCGTGAAACCCAGGGC-CAGACGTCACC--------------
s panTro4.chr8                55020474 134 + 143986469 GGGACCAGCC---CTGC----------------CA---A------------------------------------CTTCCAT-----------CGTGGGCTCAGCT-------GCAGCT-----------------------GCCACCTGCACACGG-------TGCGGGGAAG-----CAGCGATGGCAACCTTTCACCGTGCCCACGCCACCAGTAGCGTGAAACCCAGGGC-CAGACGTCACC--------------
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59161066 134 + 153482349 GGGACCAGCC---CTGC----------------CC---A------------------------------------CCTCCAT-----------CGTGGGCTCAGCT-------GCAGCT-----------------------GCCACCTGCACACGG-------TGCGGGGAAT-----CAGCGGTGGCAATCTTTCACCGTGCCCACGCCACCAGCAGCGTGAAACCCAGGGC-CAGACGTCACC--------------
i ponAbe2.chr8               C 0 C 0
s nomLeu3.chr18               81376036 125 - 104879549 GGGCCCAGCC---CTG-----------------CA---G------------------------------------CCTCTAC-----------CGTGGGCTCAGCT-------GCAGCT-----------------------GGCATTTGAAGGTGG-------C-------AG-----CAGTGGTGGCAACCCCAGAACCTGTCTGCGCCACCAGCAG-GCGAACCCCAGGGT-CGGACACCTCC--------------
i nomLeu3.chr18              C 0 C 0
s rheMac3.chr8                61688044 170 + 150158102 AGGATCAGCC---CTAT----------------TA---GCCTCCATCGTGGGCTCAGTTGCAGCTGCCACCTGCACGTCCAT-----------CGTCGGCTCAGTT-------GCAGCT-----------------------GCCACCTGCACAGGG-------TGCAGGGAAG-----CAGCTGTGGCAACCTCCCACCGTGCCCACGCCACCAACAGCGCAAAACCTAGGAC-CAGACGTCACC--------------
i rheMac3.chr8               C 0 C 0
s macFas5.chr8                58361908 134 + 146850525 AGGATCAGCC---CTAT----------------TA---G------------------------------------CGTCCAT-----------CGTGGGCTCAGTT-------GCAGCT-----------------------GCCACCTGCACAGGG-------TGCAGGGAAG-----CAGCTGTGGCAACCTCCCACCGTGCCCACGCCACCAACAGTGCAAAACCTAGGAC-CAGACGTCACC--------------
i macFas5.chr8               C 0 C 0
s chlSab2.chr8                53282431 134 + 139301422 AGGACCAGCC---CTGC----------------TA---G------------------------------------CCTCCAT-----------CGTGGGCTCAGTT-------GCAGCT-----------------------GCCACCTGCACAGGG-------TGCAGGGAAG-----CAGCTGTGGCAACCTCCCACCGTGCCCACGCCACCAGCAGCACAAAACCTAGGAC-CAGACGTCACC--------------
i chlSab2.chr8               C 0 C 0
s falChe1.KB397934             1269231 147 -   4640569 TGTGCTGTGC---CCTC----------------TGAGCC------------------------------------CCATCTCACCTCGA----AGTCTCTTCAGCc-------gcttct--------------------ccttcctcttcttgcGGA-------TGATGAAGAG-----CAGGGCCA-----CTCCCAGCGTGGCCAGGATGACG-----GGGCAGGCGATGGT--GAACAGCTTCTTCACATC---ATC
i falChe1.KB397934           I 7 C 0
s falPer1.KB391026             1265978 147 +   1688145 TGTGCTGTGC---TCTC----------------TGAGCC------------------------------------CCATCTCACCTCGA----AGTCTCTTCAGCc-------gcttct--------------------ccttcctcttcttgcGGA-------TGATGAAGAG-----CAGGGCCA-----CTCCCAGCGTGGCCAGGATGACG-----GGGCAGGCGATGGT--GAACAGCTTCTTCACATC---ATC
i falPer1.KB391026           I 7 C 0
s taeGut2.chr28                3060809 122 +   4963201 -GTGCCAGGT---CTGCAAGGGAAAGGGTGATGCG---C------------------------------------CCAGCTCCAGCTGC----TGCCTGCTGAGCTTGAGGAGGAGTTT---------------------------------------------TGGAGACTAC-----CTGGGACG-----CTCCCC-----------CCAA--------------CAACAGC-AGCACCCCGATCCCA----------
i taeGut2.chr28              I 7 C 0
s pseHum1.KB221209            10758975 158 +  11841479 cgcgccgtgc---ccgc----------------cg---c------------------------------------cctgccc--gccgcaccgGGCGTGCGGAGCTGGCAGCGGCCCCT--------------CCCCGCCCGCACACATGTTGAGGAGCCC---CGGCGGCTGCGGGCACCGCGGCG-----CTGCTCCCtcgccgccgccgg--------------ccccggc-cgccTCCCTTCCCCACA-----CGG
i pseHum1.KB221209           I 10 C 0
s amaVit1.KB277496                6409 181 -     10329 CAAGACGGCT---CCTC----------------CT---C------------------------------------TCTTGCCAGGCTGAGC--GGCTTGCTTGGACAGGGCATAGATTTGCAGAACGACACGACACAGCCTTCCCGTTGGTAGTAGAAACCTCACCCCCACTGT-----CTGGGACA-----CTTCTAGCACGGGACTGACAGGG-----GGAAAGCCCAGGGG-CTTACACAGACTCCACAGC---TTT
i amaVit1.KB277496           I 20 C 0
s chrPic2.chrUn_KK088237v1     1205734 145 +  22294289 -GCGCAGGGCAGGCTCC----------------CG---C------------------------------------CCAG--CAGCTCCA----GGCCGGTGGAgcc----cagggcatt---------------------------------gtgggacaaaG-CGAGGGTCTT-----CAGGTGCA-----CAGCTCCTGGGCCAGGGAGAGCT-----AGTGAGGTAACCGTGAGCCTGTAGTCTCCAAGGCCGGggc
i chrPic2.chrUn_KK088237v1   I 7 C 0
e danRer10.chr19              48218196 5198 -  48790377 I
e ornAna1.Contig1391            115132   0 -    174025 I
e tetNig2.chr10                6379385   0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382   0 -   6649201 I
e hapBur1.JH425491              252157   0 -   1273513 I
e neoBri1.JH422308             3491820   0 -   5414369 I
e araMac1.AOUJ01470298             637   0 -       895 I
e takFla1.KE121866              209731   0 +    220559 I
e fr3.chr10                    9064512   0 +   9126174 I
e ficAlb2.chr4A               19371809   0 +  21182716 I
e anoCar2.chr1               148577473   4 + 263920458 I
e zonAlb1.KB913045            12582000 6532 +  16390125 T
e colLiv1.KB375822             2439586  31 +   2691611 I
e allMis1.JH739658               38113 134 -    691381 I
e macEug2.GL124958               26121   0 -     59456 I
e galGal4.chrUn_AADN03023623      2011   0 -      5081 I
e geoFor1.JH740049              182930   0 -   1550430 I
e melGal1.chr7                34310641   0 -  38723565 I
e anaPla1.KB742696             1254472   0 -   1270250 I
e apaSpi1.KB929104               22324   0 +    818693 I
e cheMyd1.KB605988              134509   0 +    155857 I
e pelSin1.JH211051               23303   0 +    476004 I
e calJac3.chr7                33670343  20 + 155834243 I
e melUnd1.JH556573              751858   2 +  10614383 I

a score=-222289.000000
s hg38.chr8_KI270814v1_alt      118119 178 +    141812 A-GGAGCCTAATTCAGGCGATTGG------------------CCT----GGCAGC--TACA---GGGCGGGAACTC-----------------GCTGCTCAGCCATCGGA-TTTAG-GCTGCTGCACAGTCCCCAGCACTGGCGACCTCGTTCTCTGGGCGC----AG---------------------------------GGCAAGGAAGAGAGGACCCC------AGTTGGGAGGGTGGTGCACTCGGAGACCTGAAGGCCCTCTG
s panTro4.chr8                55020608 178 + 143986469 A-GGAGCCTAATTCAGGCGATTGG------------------CCC----GGCAGC--TACA---GGGCGGGAACTT-----------------GCTGCTCAGCCATCGGA-TTTAG-GCTGCTGCACAGTCCCCAGCACTGGCGACCTCGTTCTCCGGGCGC----AG---------------------------------GGCAAGGAAGAGAGGACCCC------AGTTGGGAGGGTGGTGCACTCGGAGACCTGAAGGCCCTCTG
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59161200 178 + 153482349 A-GGAGCCTAATTCAGGCGATTGG------------------CCC----GGCAGC--TACA---GGGCGGGAACTT-----------------GCTGCTCAGCCATCGGA-TTTAG-GCTGCTGCACAGTCCCCAGCACTGGCGACCTCGTTCTCTGGGCGC----AG---------------------------------GGCAAGGAAGAGAGGACCCC------AGTTGGAAGGGTGGCGCGCTCCGAGACCTGAAGGCCCTCTG
i ponAbe2.chr8               C 0 C 0
s nomLeu3.chr18               81376161 177 - 104879549 ACTGCGCCTAAGTCAGGCAGTGAGAC----------------CTC----AGTTGC--AGGA---GGGTGGGAACCT-----------------ACCGCAAAGCCTT---A-TCGCC-GCAGCTGTACAGGGCCCAGTGGTCGCGAGCCTGCGCTGCCAGCGC----AA---------------------------------GCCGAGGAAGAGCAGAGCCC------AGGCTGGAGGGCCGTGTACGCGGCGATGCTCA-GCGGTCTG
i nomLeu3.chr18              C 0 C 0
s rheMac3.chr8                61688214 157 + 150158102 GAGGAGC----------CGCTTGG------------------CCT----GGCAGC--TACA---GGGCGGGAACCC-----------------GCTGCTCAGTCATCGAA-TTTAG-GCTGTTGCACAGTCCCCAGCATTGGCGACCTCGTTCTCTGGGAGC----AG---------------------------------GGCAAGGA------------------AGATGGCAGGGTGGTACACTCGGAGACCCGAAGGCCGTCTA
i rheMac3.chr8               C 0 C 0
s macFas5.chr8                58362042 157 + 146850525 GAGGAGC----------CGCTTGG------------------CCT----GGCAGC--TACA---GGGCGGGAACCC-----------------GCTGCTCAGTCATCGAA-TTTAG-GCTGTTGCACAGTCCTCAGCATTGGCGACCTCGTTCTCTGGGAGC----AG---------------------------------GGCAAGGA------------------AGATGGGAGGGTGGTACACTCGGAGACCCGAAGGCCGTCTA
i macFas5.chr8               C 0 C 0
s chlSab2.chr8                53282565 169 + 139301422 GAGGAGC----------CGCTTGG------------------CCC----GGCAGC--TACG---GGGCGGGAACCC-----------------GCTGCTCAGTCATTGAA-TTTAG-GCTGTTGCACAGTCCCCAGCATTGGCGACCTCGTTCTCTGGGAGC----AG---------------------------------GGCAAGGAAGAGAGGACCCC------AGATGGGAGGGTGGTGCACTCGGAGACCCGAAGGCCGTCTA
i chlSab2.chr8               C 0 C 0
s monDom5.chr3               512578482 190 + 527952102 -aagACCCTGGTGCTGGGGCTGAG------------------CTG----GTCAGA--GGCACTGAGACGGCGGATT-----------------GCAGCGGAGTCCTGGGC-TTTGGCTCTGATGCGGGCCCCCCAGGAGCCTCCGTTTC-TTCCTTGCACGCTTTTGA---------------------------------GGGGAGGCGTTTAGGGCGCCTTAAAGAGCTGCAGGAGTGG-GAGCTCGCAGAGCCCCGGACCCCCGG
i monDom5.chr3               N 0 C 0
s falChe1.KB397934             1269378 123 -   4640569 ------------------------ACC-------------CTCCCCTTGGGCAGACTTGAT---AGGGGGGAT--------------------GGTGCCTAG-GGCAGAG-CACGG-GTGCGTGGGTGGTC---AGCACT--------------------GC----CG--------------------------------------------GGAGCCCCC------CACTTCGGC-----GGTGTGGCCCCATCCTTGTCCCCCCAC
i falChe1.KB397934           C 0 I 13
s falPer1.KB391026             1266125 123 +   1688145 ------------------------ACC-------------CTCCCCTTGGGCAGACTTGAT---AGGGGGGAT--------------------GGTGCCTAG-GGCAGAG-CACGG-GTGCGTGGGTGGTC---AGCACT--------------------GC----CG--------------------------------------------GGAGCCCCC------CACTTCGGC-----GGTGTGGCCCCATCCTTGTCCCCCCAC
i falPer1.KB391026           C 0 I 13
s taeGut2.chr28                3060931  99 +   4963201 ------------------------ACG----------------------GGCAGC----------GCTGAGCCC-------------------GCCACACAC-CGTAGCC-TTTAC-GCCAAGGAGACGTC----GGACCAA------------------GC----CT-------------------------------------AAGA---GGGGTC-------------------------AAGGGGCACATTATTCTTGCCCCCG
i taeGut2.chr28              C 0 C 0
s pseHum1.KB221209            10759133 148 +  11841479 ------------------------ACGTG------------TCCC----GGCAGCCCGAGG---GACCGGGACCGC---------------GAGCCGCCGGC-CGTGTCC-GGCAT-CCCGGTGTGCAGCT----GCACCGG------------------GC----CCCGCCGGCGGAGTTGGT-----------------GCTGAAGC---GGCGCCG-G------GGATGCGAT------GAATGGGAACAACCGAGGGGACCCTG
i pseHum1.KB221209           C 0 I 15
s amaVit1.KB277496                6590 165 -     10329 ------------------------ACGTAGACACCACAGACTCCA----GGCTGC--CAAG---ACGTGGTCTCCT---------------TTGCTGCACGG-GGTGGCCAGGCAG-TCCTGCTGGATGCA---GGGACCAA-----------------TGC----CTGGGCAAAGGAGTCTGTGTGAGTTCATTGACACAGCTGAGGA---AACGTCTCC------TGACAC----------AACAGACACATTGTG----------
i amaVit1.KB277496           C 0 C 0
s chrPic2.chrUn_KK088237v1     1205879 152 +  22294289 ------------------------aag----------------------ggaagg--gagt---tggggagctCACCCGAGGCCCTGTCTGCAGCTGCGTAA-CGCAAAA-CTTAC-AGACCAGACAGGCC---AGGACTGGAAAGaacagc-----agagc----ag--------------------------------------------ggagctgtg------gggcaggaccgaggggcactggcagaggtgggggagcccag
i chrPic2.chrUn_KK088237v1   C 0 C 0
e danRer10.chr19              48218196 5198 -  48790377 I
e ornAna1.Contig1391            115132   0 -    174025 I
e tetNig2.chr10                6379385   0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382   0 -   6649201 I
e hapBur1.JH425491              252157   0 -   1273513 I
e neoBri1.JH422308             3491820   0 -   5414369 I
e araMac1.AOUJ01470298             637   0 -       895 I
e takFla1.KE121866              209731   0 +    220559 I
e fr3.chr10                    9064512   0 +   9126174 I
e ficAlb2.chr4A               19371809   0 +  21182716 I
e anoCar2.chr1               148577473   4 + 263920458 I
e zonAlb1.KB913045            12582000 6532 +  16390125 T
e colLiv1.KB375822             2439586  31 +   2691611 I
e allMis1.JH739658               38113 134 -    691381 I
e macEug2.GL124958               26121   0 -     59456 I
e galGal4.chrUn_AADN03023623      2011   0 -      5081 I
e geoFor1.JH740049              182930   0 -   1550430 I
e melGal1.chr7                34310641   0 -  38723565 I
e anaPla1.KB742696             1254472   0 -   1270250 I
e apaSpi1.KB929104               22324   0 +    818693 I
e cheMyd1.KB605988              134509   0 +    155857 I
e pelSin1.JH211051               23303   0 +    476004 I
e calJac3.chr7                33670343  20 + 155834243 I
e melUnd1.JH556573              751858   2 +  10614383 I

a score=15671.000000
s hg38.chr8_KI270814v1_alt      118297 26 +    141812 GGACCAGCCTTGCCAGCCTCCGCCTT
s panTro4.chr8                55020786 26 + 143986469 GGACCAGCCTTGCCAGCCTCCGCTTT
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59161378 26 + 153482349 GGACCAGCCTTGCCAGCCTCCGCCTT
i ponAbe2.chr8               C 0 C 0
s nomLeu3.chr18               81376338 25 - 104879549 GGCCCAGCCCTG-TAGCCTCTACCAT
i nomLeu3.chr18              C 0 C 0
s rheMac3.chr8                61688371 26 + 150158102 GGACCAGCCATGCCAGCCTCCGCCTT
i rheMac3.chr8               C 0 C 0
s macFas5.chr8                58362199 26 + 146850525 GGACCAGCCATGCCAGCCTCCGCCTT
i macFas5.chr8               C 0 C 0
s chlSab2.chr8                53282734 26 + 139301422 GGACCAGCCATGCCAGCCTCCGCCTT
i chlSab2.chr8               C 0 C 0
s monDom5.chr3               512578672 12 + 527952102 AG-----------TAGCCCTCG---G
i monDom5.chr3               C 0 C 0
s falChe1.KB397934             1269514 22 -   4640569 AGTCCAGCGTGGCGAACTGCAT----
i falChe1.KB397934           I 13 C 0
s falPer1.KB391026             1266261 22 +   1688145 AGTCCAGCGTGGCGAACTGCAT----
i falPer1.KB391026           I 13 C 0
s taeGut2.chr28                3061030 17 +   4963201 ---------GTGTCAATTCCTGCCCT
i taeGut2.chr28              C 0 C 0
s amaVit1.KB277496                6755 26 -     10329 GATTTTTCCTAGCCAGCCCCAGGCTT
i amaVit1.KB277496           C 0 C 0
s chrPic2.chrUn_KK088237v1     1206031  5 +  22294289 --------------ggctg-------
i chrPic2.chrUn_KK088237v1   C 0 C 0
e danRer10.chr19              48218196 5198 -  48790377 I
e ornAna1.Contig1391            115132  0 -    174025 I
e tetNig2.chr10                6379385  0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382  0 -   6649201 I
e hapBur1.JH425491              252157  0 -   1273513 I
e neoBri1.JH422308             3491820  0 -   5414369 I
e araMac1.AOUJ01470298             637  0 -       895 I
e takFla1.KE121866              209731  0 +    220559 I
e fr3.chr10                    9064512  0 +   9126174 I
e ficAlb2.chr4A               19371809  0 +  21182716 I
e anoCar2.chr1               148577473  4 + 263920458 I
e pseHum1.KB221209            10759281 15 +  11841479 I
e zonAlb1.KB913045            12582000 6532 +  16390125 T
e colLiv1.KB375822             2439586 31 +   2691611 I
e allMis1.JH739658               38113 134 -    691381 I
e macEug2.GL124958               26121  0 -     59456 I
e galGal4.chrUn_AADN03023623      2011  0 -      5081 I
e geoFor1.JH740049              182930  0 -   1550430 I
e melGal1.chr7                34310641  0 -  38723565 I
e anaPla1.KB742696             1254472  0 -   1270250 I
e apaSpi1.KB929104               22324  0 +    818693 I
e cheMyd1.KB605988              134509  0 +    155857 I
e pelSin1.JH211051               23303  0 +    476004 I
e calJac3.chr7                33670343 20 + 155834243 I
e melUnd1.JH556573              751858  2 +  10614383 I

a score=-12087.000000
s hg38.chr8_KI270814v1_alt      118323 25 +    141812 GGGTTC-----AGCTGCAGCTGTCA----------T-----CTGC
s panTro4.chr8                55020812 25 + 143986469 GGGTTC-----AGCTGCAGCTGTCA----------T-----CTGC
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59161404 25 + 153482349 GGGTTC-----AGCTGCAGTTGTCA----------T-----CTGC
i ponAbe2.chr8               C 0 C 0
s nomLeu3.chr18               81376363 25 - 104879549 GGGCTC-----AGCTGCAGCTGCCA----------C-----CTGA
i nomLeu3.chr18              C 0 C 0
s rheMac3.chr8                61688397 25 + 150158102 GGGTTC-----AGCTGCAGCTGTCA----------T-----CTGC
i rheMac3.chr8               C 0 C 0
s macFas5.chr8                58362225 25 + 146850525 GGGTTC-----AGCTGCAGCTGTCA----------T-----CTGC
i macFas5.chr8               C 0 C 0
s chlSab2.chr8                53282760 25 + 139301422 GGGTTT-----AGCTGCAGCTGTCA----------T-----CTGC
i chlSab2.chr8               C 0 C 0
s monDom5.chr3               512578684 35 + 527952102 GGGTTCCCGAGAGCCGGGAaggtca----------ttcaggctaa
i monDom5.chr3               C 0 C 0
s falChe1.KB397934             1269536 37 -   4640569 --GGTCTCGT-TGCCGCAGCCGGCACTGTTGCAAGC-----CTTC
i falChe1.KB397934           C 0 C 0
s falPer1.KB391026             1266283 37 +   1688145 --GGTCTCGT-TGCCGCAGCCGGCACTGTTGCAAGC-----CTTC
i falPer1.KB391026           C 0 C 0
s taeGut2.chr28                3061047 30 +   4963201 --GAC--------ACCCCGACGGCACTGTCCTCACC-----CCCC
i taeGut2.chr28              C 0 I 20
s pseHum1.KB221209            10759296 22 +  11841479 GGGAT--------CCGCCGCTGCCA----------T-----CCCG
i pseHum1.KB221209           I 15 I 11
s amaVit1.KB277496                6781 22 -     10329 TGGGT--------GTGCAACCGCTG----------C-----CACC
i amaVit1.KB277496           C 0 I 35
s chrPic2.chrUn_KK088237v1     1206036 23 +  22294289 -----------ggtggcagagggctgtggggcag-----------
i chrPic2.chrUn_KK088237v1   C 0 C 0
e danRer10.chr19              48218196 5198 -  48790377 I
e ornAna1.Contig1391            115132  0 -    174025 I
e tetNig2.chr10                6379385  0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382  0 -   6649201 I
e hapBur1.JH425491              252157  0 -   1273513 I
e neoBri1.JH422308             3491820  0 -   5414369 I
e araMac1.AOUJ01470298             637  0 -       895 I
e takFla1.KE121866              209731  0 +    220559 I
e fr3.chr10                    9064512  0 +   9126174 I
e ficAlb2.chr4A               19371809  0 +  21182716 I
e anoCar2.chr1               148577473  4 + 263920458 I
e zonAlb1.KB913045            12582000 6532 +  16390125 T
e colLiv1.KB375822             2439586 31 +   2691611 I
e allMis1.JH739658               38113 134 -    691381 I
e macEug2.GL124958               26121  0 -     59456 I
e galGal4.chrUn_AADN03023623      2011  0 -      5081 I
e geoFor1.JH740049              182930  0 -   1550430 I
e melGal1.chr7                34310641  0 -  38723565 I
e anaPla1.KB742696             1254472  0 -   1270250 I
e apaSpi1.KB929104               22324  0 +    818693 I
e cheMyd1.KB605988              134509  0 +    155857 I
e pelSin1.JH211051               23303  0 +    476004 I
e calJac3.chr7                33670343 20 + 155834243 I
e melUnd1.JH556573              751858  2 +  10614383 I

a score=6904.000000
s hg38.chr8_KI270814v1_alt      118348 8 +    141812 --ATATGGCG
s panTro4.chr8                55020837 8 + 143986469 --ATATGTCG
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59161429 8 + 153482349 --ATATGGCG
i ponAbe2.chr8               C 0 C 0
s nomLeu3.chr18               81376388 8 - 104879549 --ACATGGCA
i nomLeu3.chr18              C 0 C 0
s rheMac3.chr8                61688422 8 + 150158102 --ATACGGCG
i rheMac3.chr8               C 0 C 0
s macFas5.chr8                58362250 8 + 146850525 --ATACGGCG
i macFas5.chr8               C 0 C 0
s chlSab2.chr8                53282785 8 + 139301422 --ATATGGCG
i chlSab2.chr8               C 0 C 0
s monDom5.chr3               512578719 8 + 527952102 --gcccggcg
i monDom5.chr3               C 0 C 0
s falChe1.KB397934             1269573 6 -   4640569 --ATGCGG--
i falChe1.KB397934           C 0 I 21
s falPer1.KB391026             1266320 6 +   1688145 --ATGCGG--
i falPer1.KB391026           C 0 I 21
s chrPic2.chrUn_KK088237v1     1206059 8 +  22294289 gactgagg--
i chrPic2.chrUn_KK088237v1   C 0 C 0
e danRer10.chr19              48218196 5198 -  48790377 I
e ornAna1.Contig1391            115132 0 -    174025 I
e tetNig2.chr10                6379385 0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382 0 -   6649201 I
e hapBur1.JH425491              252157 0 -   1273513 I
e neoBri1.JH422308             3491820 0 -   5414369 I
e araMac1.AOUJ01470298             637 0 -       895 I
e takFla1.KE121866              209731 0 +    220559 I
e fr3.chr10                    9064512 0 +   9126174 I
e ficAlb2.chr4A               19371809 0 +  21182716 I
e anoCar2.chr1               148577473 4 + 263920458 I
e pseHum1.KB221209            10759318 11 +  11841479 I
e zonAlb1.KB913045            12582000 6532 +  16390125 T
e colLiv1.KB375822             2439586 31 +   2691611 I
e allMis1.JH739658               38113 134 -    691381 I
e macEug2.GL124958               26121 0 -     59456 I
e galGal4.chrUn_AADN03023623      2011 0 -      5081 I
e geoFor1.JH740049              182930 0 -   1550430 I
e melGal1.chr7                34310641 0 -  38723565 I
e anaPla1.KB742696             1254472 0 -   1270250 I
e amaVit1.KB277496                6803 35 -     10329 I
e apaSpi1.KB929104               22324 0 +    818693 I
e cheMyd1.KB605988              134509 0 +    155857 I
e pelSin1.JH211051               23303 0 +    476004 I
e calJac3.chr7                33670343 20 + 155834243 I
e melUnd1.JH556573              751858 2 +  10614383 I
e taeGut2.chr28                3061077 20 +   4963201 I

a score=4125.000000
s hg38.chr8_KI270814v1_alt      118356 8 +    141812 CGCGGCAG
s panTro4.chr8                55020845 8 + 143986469 CGCGGCAG
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59161437 8 + 153482349 CGCGGCAG
i ponAbe2.chr8               C 0 C 0
s nomLeu3.chr18               81376396 8 - 104879549 CGTGGCAG
i nomLeu3.chr18              C 0 C 0
s rheMac3.chr8                61688430 8 + 150158102 CGCAGTAG
i rheMac3.chr8               C 0 C 0
s macFas5.chr8                58362258 8 + 146850525 CGCAGTAG
i macFas5.chr8               C 0 C 0
s chlSab2.chr8                53282793 8 + 139301422 CGCAGTAG
i chlSab2.chr8               C 0 C 0
s monDom5.chr3               512578727 5 + 527952102 tttta---
i monDom5.chr3               C 0 C 0
s falChe1.KB397934             1269600 8 -   4640569 CGCAGCTC
i falChe1.KB397934           I 21 C 0
s falPer1.KB391026             1266347 8 +   1688145 CGCAGCTC
i falPer1.KB391026           I 21 C 0
s zonAlb1.KB913045            12575468 8 +  16390125 CACGGCTC
i zonAlb1.KB913045           T 6532 C 0
s taeGut2.chr28                3061097 8 +   4963201 CCTCTCCC
i taeGut2.chr28              I 20 C 0
s pseHum1.KB221209            10759329 8 +  11841479 CGGGGATG
i pseHum1.KB221209           I 11 C 0
s chrPic2.chrUn_KK088237v1     1206067 5 +  22294289 ---ggcac
i chrPic2.chrUn_KK088237v1   C 0 C 0
e danRer10.chr19              48218196 5198 -  48790377 I
e ornAna1.Contig1391            115132 0 -    174025 I
e tetNig2.chr10                6379385 0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382 0 -   6649201 I
e hapBur1.JH425491              252157 0 -   1273513 I
e neoBri1.JH422308             3491820 0 -   5414369 I
e araMac1.AOUJ01470298             637 0 -       895 I
e takFla1.KE121866              209731 0 +    220559 I
e fr3.chr10                    9064512 0 +   9126174 I
e ficAlb2.chr4A               19371809 0 +  21182716 I
e anoCar2.chr1               148577473 4 + 263920458 I
e colLiv1.KB375822             2439586 31 +   2691611 I
e allMis1.JH739658               38113 134 -    691381 I
e macEug2.GL124958               26121 0 -     59456 I
e galGal4.chrUn_AADN03023623      2011 0 -      5081 I
e geoFor1.JH740049              182930 0 -   1550430 I
e melGal1.chr7                34310641 0 -  38723565 I
e anaPla1.KB742696             1254472 0 -   1270250 I
e amaVit1.KB277496                6803 35 -     10329 I
e apaSpi1.KB929104               22324 0 +    818693 I
e cheMyd1.KB605988              134509 0 +    155857 I
e pelSin1.JH211051               23303 0 +    476004 I
e calJac3.chr7                33670343 20 + 155834243 I
e melUnd1.JH556573              751858 2 +  10614383 I

a score=-87964.000000
s hg38.chr8_KI270814v1_alt      118364  82 +    141812 ---CAGAGGTGGCAACTCTC----------AACGCTGCCCGAGCCACCAGCA-----GCGCGGACCCCT------------------GGCCAGATG----CC--------------CCAGCAGCGCCTAATT--------CGGG
s panTro4.chr8                55020853  82 + 143986469 ---CAGGGGTGGCAACCCTC----------AAGGCTGCCCGAGCCACCAGCA-----GCGCGGACCCCT------------------GGCCAGATG----CT--------------CCAGCAGCGCCTAATT--------CGGG
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59161445  82 + 153482349 ---CAGCGGTGGCAGCTCTC----------AACGCTGCCTGAGCCACCAGCA-----GCGCGGACCCCT------------------GGCCAGATG----CC--------------CTAGCAGAGCCTAATT--------CAGG
i ponAbe2.chr8               C 0 C 0
s nomLeu3.chr18               81376404  82 - 104879549 ---CAGAGGCTGCAACCCCC----------ACC-CTGACAGCGCCACCAGTA-----GCGCGGATACTTG-----------------GGCCAGAAG----CC--------------TCCAGGGCGCCTAAGT--------CAGG
i nomLeu3.chr18              C 0 I 308
s rheMac3.chr8                61688438  83 + 150158102 ---TAGTGGTGGCAACTCCC----------AACGCTGCCCGAGCCACCAGCA-----GTGCGGACCCCGG-----------------TGCCAGACA----CC--------------CTGGCAGCGCCTCATT--------CGGG
i rheMac3.chr8               C 0 C 0
s macFas5.chr8                58362266  83 + 146850525 ---TAGTGGTGGCAACTCCC----------AACGCTGCCGGAGCCACCAGCA-----GTGCGGACCCCGG-----------------TGCCAGACA----CC--------------CTGGCAGCGCCTCATT--------TGGG
i macFas5.chr8               C 0 C 0
s chlSab2.chr8                53282801  83 + 139301422 ---CAGTGGTGGCAACTCCC----------AACGCTGCCCGAGCCACCAGCA-----GTGCAGACCCCCG-----------------GGCCAGACA----CC--------------CGGGCAGCGCCTCATT--------CGGG
i chlSab2.chr8               C 0 C 0
s calJac3.chr7                33670363  82 + 155834243 ---CAGGGGCTGCAAC-CCC----------GACCCTGCCGGCGCCACCAACC-----TCGCGGATCCTTG-----------------GGCCAGAAG----CC--------------TCCATGGCGCCTAGGT--------CAGG
i calJac3.chr7               I 20 C 0
s monDom5.chr3               512578732 114 + 527952102 ---cagaggaggaa---ccc----------gaggctcGCCAAGCAAACAGCATTGGCGCGAGGGCCCCGGGCCCCAGACCAAATCTCGGCCAGGTGAGCACC--------------TGGGGGGCCCCTGATTTCTCTGACCCGG
i monDom5.chr3               C 0 I 9
s falChe1.KB397934             1269608  63 -   4640569 CGTCAGGAA---------------------CACCTCGCCGGAGCTGTTGGT------GCGGAGGCTCTGCCA---------------GACCCAGTT----GC--------------CCTTGGG---------------------
i falChe1.KB397934           C 0 C 0
s falPer1.KB391026             1266355  63 +   1688145 CGTCAGGAA---------------------CACCTCGCCGGAGCTGTTGGT------GCGGAGGCTCTGCCA---------------GACCCAGTT----GC--------------CCTTGGG---------------------
i falPer1.KB391026           C 0 C 0
s zonAlb1.KB913045            12575476  82 +  16390125 CAGCGCGGTGAGGG----------------CGCCTCGCCGGACACATCTCC------CCGCAGCCCGACTCT---------------CACACGGTC----ACACCGGCTTTCCTTACCGTTCG---------------------
i zonAlb1.KB913045           C 0 C 0
s taeGut2.chr28                3061105  53 +   4963201 TGGCGC------------------------TGCCCAGCC-------TTGGC------CCCCAGCCCCGCTGG---------------AGCGCGGCA----GC--------------CTGCCGG---------------------
i taeGut2.chr28              C 0 C 0
s pseHum1.KB221209            10759337  46 +  11841479 GAGCGCCGT---------------------TACCTCACC---------------------CATCCCTACC-------------------CCGGGCT----ACAG------------TTACCGG---------------------
i pseHum1.KB221209           C 0 C 0
s chrPic2.chrUn_KK088237v1     1206072  81 +  22294289 tggcagaggtgggggagcccagggctgggtggctctggcagaggtggggga------gcccag------------------------ggctgggta----gtggggag--------ctgtggg---------------------
i chrPic2.chrUn_KK088237v1   C 0 C 0
e danRer10.chr19              48218196 5198 -  48790377 I
e ornAna1.Contig1391            115132   0 -    174025 I
e tetNig2.chr10                6379385   0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382   0 -   6649201 I
e hapBur1.JH425491              252157   0 -   1273513 I
e neoBri1.JH422308             3491820   0 -   5414369 I
e araMac1.AOUJ01470298             637   0 -       895 I
e takFla1.KE121866              209731   0 +    220559 I
e fr3.chr10                    9064512   0 +   9126174 I
e ficAlb2.chr4A               19371809   0 +  21182716 I
e anoCar2.chr1               148577473   4 + 263920458 I
e colLiv1.KB375822             2439586  31 +   2691611 I
e allMis1.JH739658               38113 134 -    691381 I
e macEug2.GL124958               26121   0 -     59456 I
e galGal4.chrUn_AADN03023623      2011   0 -      5081 I
e geoFor1.JH740049              182930   0 -   1550430 I
e melGal1.chr7                34310641   0 -  38723565 I
e anaPla1.KB742696             1254472   0 -   1270250 I
e amaVit1.KB277496                6803  35 -     10329 I
e apaSpi1.KB929104               22324   0 +    818693 I
e cheMyd1.KB605988              134509   0 +    155857 I
e pelSin1.JH211051               23303   0 +    476004 I
e melUnd1.JH556573              751858   2 +  10614383 I

a score=-85377.000000
s hg38.chr8_KI270814v1_alt      118446  97 +    141812 CGGCCGGCCCTTCAGCTGCAGGAGGGGGGAACCAGTGGCTCA--GC------------CCCATGTAGGCGGCTGCACAGTG------------CCCA-------GCACTCAAGACCTCGCGCTC-------AAAAGA-
s panTro4.chr8                55020935  97 + 143986469 CGGCCGGCCCTTCAGCTGCAGGAGGGGGGAACCAGTGGCTCA--GC------------CCCATGTAGGCGGCTGCACAGTG------------CCCA-------ACACTCAAGAGCTCGTGCTC-------AAAAGA-
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59161527  97 + 153482349 CGGCCGGCCCTTCAGCTGCAGTAGCGGGGAACCAGTGGCTCA--GC------------CCCATGTAGGCAACTACACAGTG------------CCCA-------GCACTCAAGACCTCGCGCTC-------AAAAGA-
i ponAbe2.chr8               C 0 C 0
s rheMac3.chr8                61688521  97 + 150158102 CGGTTGGTCCTTCAGCTGCAGGAGTGGGGAACCGGTAACTCA--GC------------CCCATTTAGGCAGCTGCACAGTG------------CCCA-------GCACCCAAGACCTCGCGCTC-------AACAGA-
i rheMac3.chr8               C 0 C 0
s macFas5.chr8                58362349  97 + 146850525 CGGTTGGTCCTTCAGCTGCAGGAGTGGGGAACCGGTAACTCA--GC------------CCCATTTAGGCAGCTGCACAGTG------------CCCA-------GCACCCAAGACCTCGCGCTC-------AACAGA-
i macFas5.chr8               C 0 C 0
s chlSab2.chr8                53282884  95 + 139301422 CGGTTGCTCCTTTAGCTGCAGGAGTGGGGAACCGGTAA--CA--GC------------CCCATGTAGGCAGCTGCACAGTG------------CCCA-------GCACCCAAGACCTCGCGCTC-------AACAGA-
i chlSab2.chr8               C 0 C 0
s calJac3.chr7                33670445  96 + 155834243 -GGGTGGGTCGCCAGCTGCAGGAGGGCGGGAACCGACGCTCA--GC------------GCCACCCCGGAGGCTGCAGGGTG------------CCCA-------GCGCCAGGGCCCAGCTCCTG-------GATCGC-
i calJac3.chr7               C 0 C 0
s monDom5.chr3               512578855 118 + 527952102 GGGCCTGACCCCTTTCTTCCGCAGCGGGGGGCCAGCTCCTCAGTGC------------CTCGCTCGCTCGCCTGCTCTCTGTCCCCTCCCTCCCTCG-------GGGCGCAGCCCCTCCCCTTCCTCCCCAGCCTGG-
i monDom5.chr3               I 9 C 0
s falChe1.KB397934             1269671  94 -   4640569 ----CCGGTACTCCAGGACGATGGCAGTGATGGGGCAGCCCC--CG------------CTGCTCCAGCCCTGTAGGTTGAG------------CCTG-------GCGTGCGTGGAGTTGATGTG-------GGTGAAG
i falChe1.KB397934           C 0 C 0
s falPer1.KB391026             1266418  94 +   1688145 ----CCGGTACTCCAGGACGATGGCAGTGATGGGGCAGCCCc--cg------------ctgctccagccctgtAGGTTGAG------------CCTG-------GCGTGCGTGGAGTTGATGTG-------GGTGAAG
i falPer1.KB391026           C 0 C 0
s zonAlb1.KB913045            12575558 116 +  16390125 -ACCCCGCTTTCCCACAGCAGAGTCCCAGATATCTCGTTCCA--TAAAGCAATTTATTCCTGTGCAGTAACACAGGAACAG------------CTCGAGCTGGTGCCTCTGAGGAGAGCACCTA-------CATAAAG
i zonAlb1.KB913045           C 0 C 0
s taeGut2.chr28                3061158  83 +   4963201 -GCGCTGCCCCCCGGGCACTGCCCCCTGGGTGCATcgccccc--cg------------cccg--------cccggggaccc------------ccc--------gcccgccggcAGAGC------------CATGAAG
i taeGut2.chr28              C 0 C 0
s pseHum1.KB221209            10759383  88 +  11841479 -CACCCGTTTCTCAGACAAAGG---CGGGGGACGCCAAACCC--GGAG----------CCTG-GCAGCCGTACCGGACAGA------------C----------ACCCCCGTGGCACGCACCCC-------CTT----
i pseHum1.KB221209           C 0 C 0
s chrPic2.chrUn_KK088237v1     1206153  79 +  22294289 ----gcaggacctaggggcactggcagag-----cccccccc--cG------------CTGA--GAGCTGTTCACCCTCCC------------CCCA-------GTCCCTCTGGGGCTAACG---------------G
i chrPic2.chrUn_KK088237v1   C 0 C 0
e danRer10.chr19              48218196 5198 -  48790377 I
e ornAna1.Contig1391            115132   0 -    174025 I
e tetNig2.chr10                6379385   0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382   0 -   6649201 I
e hapBur1.JH425491              252157   0 -   1273513 I
e neoBri1.JH422308             3491820   0 -   5414369 I
e araMac1.AOUJ01470298             637   0 -       895 I
e takFla1.KE121866              209731   0 +    220559 I
e fr3.chr10                    9064512   0 +   9126174 I
e ficAlb2.chr4A               19371809   0 +  21182716 I
e anoCar2.chr1               148577473   4 + 263920458 I
e colLiv1.KB375822             2439586  31 +   2691611 I
e allMis1.JH739658               38113 134 -    691381 I
e macEug2.GL124958               26121   0 -     59456 I
e galGal4.chrUn_AADN03023623      2011   0 -      5081 I
e geoFor1.JH740049              182930   0 -   1550430 I
e melGal1.chr7                34310641   0 -  38723565 I
e anaPla1.KB742696             1254472   0 -   1270250 I
e amaVit1.KB277496                6803  35 -     10329 I
e apaSpi1.KB929104               22324   0 +    818693 I
e cheMyd1.KB605988              134509   0 +    155857 I
e pelSin1.JH211051               23303   0 +    476004 I
e melUnd1.JH556573              751858   2 +  10614383 I
e nomLeu3.chr18               81376486 308 - 104879549 I

a score=-53416.000000
s hg38.chr8_KI270814v1_alt      118543 18 +    141812 -------GGGCACAGG-AGGAGCA----GC
s panTro4.chr8                55021032 18 + 143986469 -------GGGCAAGGG-AGGAGCA----GC
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59161624 18 + 153482349 -------GGGCAAGGG-AGGAGCA----GC
i ponAbe2.chr8               C 0 C 0
s rheMac3.chr8                61688618 18 + 150158102 -------GGGCAGGGG-AGGAACA----GC
i rheMac3.chr8               C 0 C 0
s macFas5.chr8                58362446 18 + 146850525 -------GGGCAGGGG-AGGAACA----GC
i macFas5.chr8               C 0 C 0
s chlSab2.chr8                53282979 18 + 139301422 -------GGGCAGGGG-AGGAACA----GC
i chlSab2.chr8               C 0 C 0
s calJac3.chr7                33670541 15 + 155834243 -------GGGTCGAGG-AGGGGC-------
i calJac3.chr7               C 0 C 0
s monDom5.chr3               512578973 15 + 527952102 -------GGGGCGGGG-CCGAGC-------
i monDom5.chr3               C 0 C 0
s ornAna1.Contig16971             8457 19 -     13060 -------GTGCACGGGCAGGAAGT----CC
i ornAna1.Contig16971        n 0 C 0
s falChe1.KB397934             1269765 29 -   4640569 AGGTGCTGGTCCTTGC-TGAAGGAAGGCTC
i falChe1.KB397934           C 0 C 0
s falPer1.KB391026             1266512 29 +   1688145 AGGTGCTGGTCCTTGC-TGAAGGAAGGCTC
i falPer1.KB391026           C 0 C 0
s zonAlb1.KB913045            12575674 14 +  16390125 AACCTCCAGGCT----------------TC
i zonAlb1.KB913045           C 0 C 0
s taeGut2.chr28                3061241 22 +   4963201 ---CTGCAGGCGGTGA-TGGAGAA----CC
i taeGut2.chr28              C 0 C 0
s pseHum1.KB221209            10759471 11 +  11841479 ---CTCCCGGCG----------------GC
i pseHum1.KB221209           C 0 C 0
s chrPic2.chrUn_KK088237v1     1206232 23 +  22294289 GGTCTCTAGCCT-------GGAGATGCCTC
i chrPic2.chrUn_KK088237v1   C 0 C 0
e danRer10.chr19              48218196 5198 -  48790377 I
e tetNig2.chr10                6379385  0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382  0 -   6649201 I
e hapBur1.JH425491              252157  0 -   1273513 I
e neoBri1.JH422308             3491820  0 -   5414369 I
e araMac1.AOUJ01470298             637  0 -       895 I
e takFla1.KE121866              209731  0 +    220559 I
e fr3.chr10                    9064512  0 +   9126174 I
e ficAlb2.chr4A               19371809  0 +  21182716 I
e anoCar2.chr1               148577473  4 + 263920458 I
e colLiv1.KB375822             2439586 31 +   2691611 I
e allMis1.JH739658               38113 134 -    691381 I
e macEug2.GL124958               26121  0 -     59456 I
e galGal4.chrUn_AADN03023623      2011  0 -      5081 I
e geoFor1.JH740049              182930  0 -   1550430 I
e melGal1.chr7                34310641  0 -  38723565 I
e anaPla1.KB742696             1254472  0 -   1270250 I
e amaVit1.KB277496                6803 35 -     10329 I
e apaSpi1.KB929104               22324  0 +    818693 I
e cheMyd1.KB605988              134509  0 +    155857 I
e pelSin1.JH211051               23303  0 +    476004 I
e melUnd1.JH556573              751858  2 +  10614383 I
e nomLeu3.chr18               81376486 308 - 104879549 I

a score=-24172.000000
s hg38.chr8_KI270814v1_alt      118561 15 +    141812 TGCAGGGG-------GCAGCGT
s panTro4.chr8                55021050 15 + 143986469 TGCAGGGG-------GCAGCGT
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59161642 15 + 153482349 TGCAGGGG-------GCAGCGC
i ponAbe2.chr8               C 0 C 0
s rheMac3.chr8                61688636 15 + 150158102 AGAAGGAG-------GCAGCTC
i rheMac3.chr8               C 0 C 0
s macFas5.chr8                58362464 15 + 146850525 AGAAGGAG-------GCAGCTC
i macFas5.chr8               C 0 C 0
s chlSab2.chr8                53282997 15 + 139301422 AGAAGGGG-------GCTGCTC
i chlSab2.chr8               C 0 C 0
s calJac3.chr7                33670556 12 + 155834243 ---CAGGG-------GCGGCTC
i calJac3.chr7               C 0 C 0
s monDom5.chr3               512578988 12 + 527952102 ---CGAGA-------GCTCCCT
i monDom5.chr3               C 0 C 0
s ornAna1.Contig16971             8476 15 -     13060 TGGAGAAG-------AAGGAGT
i ornAna1.Contig16971        C 0 C 0
s falChe1.KB397934             1269794  8 -   4640569 TGCGGGAG--------------
i falChe1.KB397934           C 0 I 6
s falPer1.KB391026             1266541  8 +   1688145 TGCGGGAG--------------
i falPer1.KB391026           C 0 I 6
s zonAlb1.KB913045            12575688  8 +  16390125 TACAGCCT--------------
i zonAlb1.KB913045           C 0 C 0
s taeGut2.chr28                3061263  8 +   4963201 Tgcagcgg--------------
i taeGut2.chr28              C 0 C 0
s pseHum1.KB221209            10759482  8 +  11841479 CGCAGCCC--------------
i pseHum1.KB221209           C 0 C 0
s chrPic2.chrUn_KK088237v1     1206255 15 +  22294289 TGCTATGGCACACGT-------
i chrPic2.chrUn_KK088237v1   C 0 I 3
s xenTro7.KB021950               74941 15 +    103910 TGCCGGGG-------GCTGTGT
i xenTro7.KB021950           N 0 C 0
e danRer10.chr19              48218196 5198 -  48790377 I
e tetNig2.chr10                6379385  0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382  0 -   6649201 I
e hapBur1.JH425491              252157  0 -   1273513 I
e neoBri1.JH422308             3491820  0 -   5414369 I
e araMac1.AOUJ01470298             637  0 -       895 I
e takFla1.KE121866              209731  0 +    220559 I
e fr3.chr10                    9064512  0 +   9126174 I
e ficAlb2.chr4A               19371809  0 +  21182716 I
e anoCar2.chr1               148577473  4 + 263920458 I
e colLiv1.KB375822             2439586 31 +   2691611 I
e allMis1.JH739658               38113 134 -    691381 I
e macEug2.GL124958               26121  0 -     59456 I
e galGal4.chrUn_AADN03023623      2011  0 -      5081 I
e geoFor1.JH740049              182930  0 -   1550430 I
e melGal1.chr7                34310641  0 -  38723565 I
e anaPla1.KB742696             1254472  0 -   1270250 I
e amaVit1.KB277496                6803 35 -     10329 I
e apaSpi1.KB929104               22324  0 +    818693 I
e cheMyd1.KB605988              134509  0 +    155857 I
e pelSin1.JH211051               23303  0 +    476004 I
e melUnd1.JH556573              751858  2 +  10614383 I
e nomLeu3.chr18               81376486 308 - 104879549 I

a score=-105664.000000
s hg38.chr8_KI270814v1_alt      118576 46 +    141812 CGTTAGGCGGGCCCTGAGA----CAGCTGGGACC-----------GCGCGCTCGGCTCTAG-------
s panTro4.chr8                55021065 46 + 143986469 CGTTAGGCGGGCCCTGAGA----CAGCTGGGACC-----------GCGCGCTCCGCTCTAG-------
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59161657 46 + 153482349 CGTTAGGCTGGCCCTGAGA----CAGCTGGGACC-----------GCGCGCTCGGCTCTGG-------
i ponAbe2.chr8               C 0 C 0
s rheMac3.chr8                61688651 46 + 150158102 TGTTAGGCGGGCCTTGAGG----CACCTGGGACA-----------GCGCGCTCCGGTCTGG-------
i rheMac3.chr8               C 0 C 0
s macFas5.chr8                58362479 46 + 146850525 TGTTAGGCGGGCCTTGAGG----CACCTGGGACA-----------GCGCGCTCCGGTCTGG-------
i macFas5.chr8               C 0 C 0
s chlSab2.chr8                53283012 46 + 139301422 TGTTAGGCGGGCTTTGAGG----CACCTGGGACA-----------GCGCGCTGCGGTCTGG-------
i chlSab2.chr8               C 0 C 0
s calJac3.chr7                33670568 46 + 155834243 TGTCAAGCGGGCTGTGTGG----CAGGGCGTCCC-----------CCATGTTCCGCTCCAA-------
i calJac3.chr7               C 0 C 0
s monDom5.chr3               512579000 42 + 527952102 TGACAGCCCG--CCCGGGC----CGGAGGGAATG-----------CCCTGCACC--TTTGG-------
i monDom5.chr3               C 0 C 0
s ornAna1.Contig16971             8491 50 -     13060 CCCCGGGCGACCCCGCGGGACCCCAGCCGGAGGG-----------AGGGCCCCAGGAGGAG-------
i ornAna1.Contig16971        C 0 C 0
s falChe1.KB397934             1269808 46 -   4640569 CATCAGGAGGGCTGCTGTA----CAGAGGGGACC-----------GCAAGtgccccccagc-------
i falChe1.KB397934           I 6 I 16
s falPer1.KB391026             1266555 46 +   1688145 CATCAGGAGGGCTGCTGTA----CAGAGGGGACC-----------GCAAGTGCCCgcctgc-------
i falPer1.KB391026           I 6 I 16
s zonAlb1.KB913045            12575696 28 +  16390125 ---CAGT---CGTCCC----------------CT-----------GAGCCAGTCCTGCCGG-------
i zonAlb1.KB913045           C 0 I 5731
s taeGut2.chr28                3061271 19 +   4963201 ---cagc---------------------------------------agcgcgcacggctgc-------
i taeGut2.chr28              C 0 I 40
s pseHum1.KB221209            10759490 42 +  11841479 ---GGGCGGGGGTTCCA-A----AACAAGTGGCA-----------GTGCGTGCGCGGAGCC-------
i pseHum1.KB221209           C 0 I 39
s melUnd1.JH556589             7673652 15 -   7952740 ----------------------------------------------CGCGAGGCTGGTCGT-------
i melUnd1.JH556589           T 6397 I 40
s chrPic2.chrUn_KK088237v1     1206273 41 +  22294289 ----------------GGC----TAGCAGTGGCCTCTGCCATGTGGccagtgccctgcccc-------
i chrPic2.chrUn_KK088237v1   I 3 I 6
s xenTro7.KB021950               74956 52 +    103910 -GCTTGGGGCGCTGTGTGT----CTGTGCCGGGC-----------GCGCTGTGTGCTTGGGGCGCTGT
i xenTro7.KB021950           C 0 C 0
e danRer10.chr19              48218196 5198 -  48790377 I
e tetNig2.chr10                6379385  0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382  0 -   6649201 I
e hapBur1.JH425491              252157  0 -   1273513 I
e neoBri1.JH422308             3491820  0 -   5414369 I
e araMac1.AOUJ01470298             637  0 -       895 I
e takFla1.KE121866              209731  0 +    220559 I
e fr3.chr10                    9064512  0 +   9126174 I
e ficAlb2.chr4A               19371809  0 +  21182716 I
e anoCar2.chr1               148577473  4 + 263920458 I
e colLiv1.KB375822             2439586 31 +   2691611 I
e allMis1.JH739658               38113 134 -    691381 I
e macEug2.GL124958               26121  0 -     59456 I
e galGal4.chrUn_AADN03023623      2011  0 -      5081 I
e geoFor1.JH740049              182930  0 -   1550430 I
e melGal1.chr7                34310641  0 -  38723565 I
e anaPla1.KB742696             1254472  0 -   1270250 I
e amaVit1.KB277496                6803 35 -     10329 I
e apaSpi1.KB929104               22324  0 +    818693 I
e cheMyd1.KB605988              134509  0 +    155857 I
e pelSin1.JH211051               23303  0 +    476004 I
e nomLeu3.chr18               81376486 308 - 104879549 I

a score=-112424.000000
s hg38.chr8_KI270814v1_alt      118622 68 +    141812 GGAGCTCGGCCAGTCCACAGGCG---TCTCAGCAGCAG---CTGC------CACCTGCATG---------CGGTGCCGGCGAGTGCTCG
s panTro4.chr8                55021111 68 + 143986469 GGAGCTCGGCCAGTCCACAGGCG---TCTCAGCAGCAG---CTGC------CACCTGCATG---------CGGTGCCGGCCAGTGCTCG
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59161703 68 + 153482349 GGAGCTCGGCCAGTCCACAGGCG---TCTCAGCAGCAG---CTGC------CACCTGCATG---------CGGTGCAGGCGAGTGCTCG
i ponAbe2.chr8               C 0 C 0
s rheMac3.chr8                61688697 68 + 150158102 GGAGCTCCGCCAGTCCATAGGCG---CCTCAGCAGCAG---CTGC------CACCTGCATG---------CGGTGCCCGCGAGTGCGCG
i rheMac3.chr8               C 0 C 0
s macFas5.chr8                58362525 68 + 146850525 GGAGCTCCGCCAGTCCATAGGCG---CCTCAGCAGCAG---CTGC------CACCTGCATG---------CGGTGCCCGCGAGTGCGCG
i macFas5.chr8               C 0 C 0
s chlSab2.chr8                53283058 68 + 139301422 GGAGCTCCGCCAGTCCATAGGCG---CCTCAGCAGCAG---CTGC------CACCTGCATG---------CGGTGCCCGCGAGTGCGCG
i chlSab2.chr8               C 0 C 0
s calJac3.chr7                33670614 67 + 155834243 GGAGCCTCGCCAGCACGGCAGCG---CCTCAGCGGCAG---GTGC------CACCTGCACG---------TGGTGCCCTTTGGAGC-CG
i calJac3.chr7               C 0 C 0
s monDom5.chr3               512579042 64 + 527952102 GAAAGGGGGCC--CTCGCCGCCG---TCGCAGCAGCCG---TAGC------CGCAGGTTCG-----GGGCCGGAGCCCCGGAG------
i monDom5.chr3               C 0 C 0
s ornAna1.Contig16971             8541 47 -     13060 GGGGCTTGG--AGCCCGCAACCGGAATCCCAGGAGCTG---CTG--------AGCTGGAG-----------------------------
i ornAna1.Contig16971        C 0 C 0
s falChe1.KB397934             1269870 47 -   4640569 GGGG-----------CAGGCTCA---CCTCTGCCGTGGGTCTTG--------GCTTCGATG-----ATCTCACT---------------
i falChe1.KB397934           I 16 I 11
s falPer1.KB391026             1266617 47 +   1688145 GGGG-----------CAGGCTCA---CCTCTGCCGTGGGTCTTG--------GCTTCGATG-----ATCTCACT---------------
i falPer1.KB391026           I 16 I 11
s taeGut2.chr28                3061330 33 +   4963201 gcagcCT------CCGCGCTGCA---CGTCCCCCCCGG--------------------------------CGCA---------------
i taeGut2.chr28              I 40 I 11
s pseHum1.KB221209            10759571 28 +  11841479 GCGG-----------GCGTGACA---CCCCGGcccccc--------------------------------cGCA---------------
i pseHum1.KB221209           I 39 I 11
s melUnd1.JH556589             7673707 28 -   7952740 GAAG-----------GAGCTCCG---CCCCAGCCGCTG--------------------------------TACC---------------
i melUnd1.JH556589           I 40 I 13
s chrPic2.chrUn_KK088237v1     1206320 43 +  22294289 ggaG-----------GCCACGTA---CCTTTCAGGCTG---TTG--------GCCAGCAGG-----AGG-CGGT---------------
i chrPic2.chrUn_KK088237v1   I 6 I 15
s xenTro7.KB021950               75008 73 +    103910 GTGTCTGTGCCGGGCGCGCTGTG---TGTCTGTGCCGG---GCACACTGTGTGCTTGGGGGGCTGTGTGTCTGTGCCGG----------
i xenTro7.KB021950           C 0 C 0
e danRer10.chr19              48218196 5198 -  48790377 I
e tetNig2.chr10                6379385  0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382  0 -   6649201 I
e hapBur1.JH425491              252157  0 -   1273513 I
e neoBri1.JH422308             3491820  0 -   5414369 I
e araMac1.AOUJ01470298             637  0 -       895 I
e takFla1.KE121866              209731  0 +    220559 I
e fr3.chr10                    9064512  0 +   9126174 I
e ficAlb2.chr4A               19371809  0 +  21182716 I
e anoCar2.chr1               148577473  4 + 263920458 I
e zonAlb1.KB913045            12575724 5731 +  16390125 I
e colLiv1.KB375822             2439586 31 +   2691611 I
e allMis1.JH739658               38113 134 -    691381 I
e macEug2.GL124958               26121  0 -     59456 I
e galGal4.chrUn_AADN03023623      2011  0 -      5081 I
e geoFor1.JH740049              182930  0 -   1550430 I
e melGal1.chr7                34310641  0 -  38723565 I
e anaPla1.KB742696             1254472  0 -   1270250 I
e amaVit1.KB277496                6803 35 -     10329 I
e apaSpi1.KB929104               22324  0 +    818693 I
e cheMyd1.KB605988              134509  0 +    155857 I
e pelSin1.JH211051               23303  0 +    476004 I
e nomLeu3.chr18               81376486 308 - 104879549 I

a score=-59353.000000
s hg38.chr8_KI270814v1_alt      118690 43 +    141812 -----------GC--TCAGGGC---GGTTTCTGGCCACACGCAGTTTCTGGCCACGCGC
s panTro4.chr8                55021179 43 + 143986469 -----------GC--TCAGGGC---GGTTTCTGGCCACACGCAGTTTCTGGCCACGCGC
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59161771 41 + 153482349 -----------GC--TCAGGGC---GGTTTCTGGCCACACG--GTTTCTGGCCACGCGC
i ponAbe2.chr8               C 0 C 0
s rheMac3.chr8                61688765 26 + 150158102 -----------GC--TCAGGGC---G-----------------GTTTCTGGCCAGGCGT
i rheMac3.chr8               C 0 C 0
s macFas5.chr8                58362593 26 + 146850525 -----------GC--TCAGGGC---G-----------------GTTTCTGGCCAGGCGT
i macFas5.chr8               C 0 C 0
s chlSab2.chr8                53283126 26 + 139301422 -----------GC--TCAGGGC---G-----------------GTTTCTGGCCAAGTGT
i chlSab2.chr8               C 0 C 0
s calJac3.chr7                33670681 22 + 155834243 -----------GG--ACAGTGA---G-----------------GTTTTCCGCCTC----
i calJac3.chr7               C 0 C 0
s myoLuc2.GL429990              230702 42 -   2104649 -----------GC--TCTGGGT---A-GCTCTGGCCGCAGGGACTTTGTGCGCACGCGC
i myoLuc2.GL429990           N 0 C 0
s monDom5.chr3               512579106 30 + 527952102 -----------GC--CCGGAGC---C----CTGGCCC------TCCTCCAGCCCCG---
i monDom5.chr3               C 0 C 0
s ornAna1.Contig16971             8588 37 -     13060 -----------GA--TCAAGGA---GGAGCCTGAGTC------CCCTCAGGAGAGCGGT
i ornAna1.Contig16971        C 0 C 0
s falChe1.KB397934             1269928 26 -   4640569 -----------CA--CCCACAC---T-----------------GTTCTTGGCTGCCAGC
i falChe1.KB397934           I 11 n 11
s falPer1.KB391026             1266675 26 +   1688145 -----------CC--CCCACAC---T-----------------GTTCTTGGCTGCCAGC
i falPer1.KB391026           I 11 n 11
s taeGut2.chr28                3061374 26 +   4963201 -----------CC--CCGGGGC---A-----------------GCCCCCTGCCAGCAGC
i taeGut2.chr28              I 11 I 9
s pseHum1.KB221209            10759610 27 +  11841479 -----------ccggccggggc---------------------gctgcgcggcggcagc
i pseHum1.KB221209           I 11 I 18
s melUnd1.JH556589             7673748 28 -   7952740 -----------CC--CCGGCTCTTCG-----------------GCTCTTCGCTCG-GGC
i melUnd1.JH556589           I 13 I 15
s chrPic2.chrUn_KK088237v1     1206378 26 +  22294289 -----------CC--CCAGTGA---A-----------------GCCGCAGGCCTGCAGT
i chrPic2.chrUn_KK088237v1   I 15 I 17
s xenTro7.KB021950               75081 39 +    103910 GCACACTGTGTGC--TTGGGGC---GCTGTGTGTGT-------GTGCTTGG--------
i xenTro7.KB021950           C 0 C 0
e danRer10.chr19              48218196 5198 -  48790377 I
e tetNig2.chr10                6379385  0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382  0 -   6649201 I
e hapBur1.JH425491              252157  0 -   1273513 I
e neoBri1.JH422308             3491820  0 -   5414369 I
e araMac1.AOUJ01470298             637  0 -       895 I
e takFla1.KE121866              209731  0 +    220559 I
e fr3.chr10                    9064512  0 +   9126174 I
e ficAlb2.chr4A               19371809  0 +  21182716 I
e anoCar2.chr1               148577473  4 + 263920458 I
e zonAlb1.KB913045            12575724 5731 +  16390125 I
e colLiv1.KB375822             2439586 31 +   2691611 I
e allMis1.JH739658               38113 134 -    691381 I
e macEug2.GL124958               26121  0 -     59456 I
e galGal4.chrUn_AADN03023623      2011  0 -      5081 I
e geoFor1.JH740049              182930  0 -   1550430 I
e melGal1.chr7                34310641  0 -  38723565 I
e anaPla1.KB742696             1254472  0 -   1270250 I
e amaVit1.KB277496                6803 35 -     10329 I
e apaSpi1.KB929104               22324  0 +    818693 I
e cheMyd1.KB605988              134509  0 +    155857 I
e pelSin1.JH211051               23303  0 +    476004 I
e nomLeu3.chr18               81376486 308 - 104879549 I

a score=-14472.000000
s hg38.chr8_KI270814v1_alt      118733 40 +    141812 AAGGCGGTTGCCTT------TTGAGGT----CCCATGGGC-GCTGGGGCCC-
s panTro4.chr8                55021222 40 + 143986469 AAGGCGGTTGCCTT------TTGAGGT----CCCATGGGC-GCTGGGGCCC-
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59161812 40 + 153482349 GAGGCCGTTGCCTT------TTGAAGT----CCCATGGGC-GCTGGGGCCC-
i ponAbe2.chr8               C 0 C 0
s rheMac3.chr8                61688791 41 + 150158102 GAGGCCGTTGCCTT------CTGAGGTG---CCCATGGGC-GCTGGGGCCC-
i rheMac3.chr8               C 0 C 0
s macFas5.chr8                58362619 41 + 146850525 GAGGCCGTTGCCTT------CCGAGGTG---CCCATGGGC-ACTGGGGCCC-
i macFas5.chr8               C 0 C 0
s chlSab2.chr8                53283152 41 + 139301422 GAGGCCGTTGCCTT------CCGAGGTG---CCCATGGGC-GCTGGGGCCC-
i chlSab2.chr8               C 0 C 0
s calJac3.chr7                33670703 43 + 155834243 --GGCAATCTCCTCAGCTGGCTGAGCTG---CGCAT--GC-GCCGCTGCCT-
i calJac3.chr7               C 0 C 0
s myoLuc2.GL429990              230744 41 -   2104649 AGTGACGTGAGCT-------CCGAGGCG---CGCACGCGCAGTTGCGTGCA-
i myoLuc2.GL429990           C 0 C 0
s monDom5.chr3               512579136 31 + 527952102 GAGG----------------CAGAGGTG---AGGGAGGGC-GGGACGGCCC-
i monDom5.chr3               C 0 C 0
s ornAna1.Contig16971             8625 33 -     13060 GAGGCA--------------CTGAGGCG---CCTTGGGGC-GAAGGGGCCC-
i ornAna1.Contig16971        C 0 C 0
s taeGut2.chr28                3061409 38 +   4963201 -GGGCAGGATCCA-------GCGCCCT----CGGAGGAGG-GAGCGGAGCC-
i taeGut2.chr28              I 9 I 1
s pseHum1.KB221209            10759655 39 +  11841479 gcggcgggcaccg-------ctgcggc----gggaggggg-ggccggggca-
i pseHum1.KB221209           I 18 n 18
s melUnd1.JH556589             7673791 37 -   7952740 -AGAGGTGCTTC--------CTGCTCC----CTGAGGTGG-GAGTGTGCCC-
i melUnd1.JH556589           I 15 I 6
s chrPic2.chrUn_KK088237v1     1206421 32 +  22294289 GGGGCAGGC-----------CTGAACC-------AGGCAG-GCCAGGGCCT-
i chrPic2.chrUn_KK088237v1   I 17 C 0
s xenTro7.KB021950               75120 43 +    103910 GGGGCTGTGTGT--------CTGTGCCGGGCACGCTGTGT-GCTTGGGGCGC
i xenTro7.KB021950           C 0 C 0
e danRer10.chr19              48218196 5198 -  48790377 I
e tetNig2.chr10                6379385  0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382  0 -   6649201 I
e hapBur1.JH425491              252157  0 -   1273513 I
e neoBri1.JH422308             3491820  0 -   5414369 I
e araMac1.AOUJ01470298             637  0 -       895 I
e takFla1.KE121866              209731  0 +    220559 I
e fr3.chr10                    9064512  0 +   9126174 I
e ficAlb2.chr4A               19371809  0 +  21182716 I
e anoCar2.chr1               148577473  4 + 263920458 I
e zonAlb1.KB913045            12575724 5731 +  16390125 I
e colLiv1.KB375822             2439586 31 +   2691611 I
e allMis1.JH739658               38113 134 -    691381 I
e falPer1.KB391026             1266701 11 +   1688145 I
e falChe1.KB397934             1269954 11 -   4640569 I
e macEug2.GL124958               26121  0 -     59456 I
e galGal4.chrUn_AADN03023623      2011  0 -      5081 I
e geoFor1.JH740049              182930  0 -   1550430 I
e melGal1.chr7                34310641  0 -  38723565 I
e anaPla1.KB742696             1254472  0 -   1270250 I
e amaVit1.KB277496                6803 35 -     10329 I
e apaSpi1.KB929104               22324  0 +    818693 I
e cheMyd1.KB605988              134509  0 +    155857 I
e pelSin1.JH211051               23303  0 +    476004 I
e nomLeu3.chr18               81376486 308 - 104879549 I

a score=-86384.000000
s hg38.chr8_KI270814v1_alt      118773 56 +    141812 AACTGC---TC---------------------------------TGCTCCGTATATTATTTATTCTCCGAGAGGTTGGA----GA-CGTCCTTGTCC
s panTro4.chr8                55021262 56 + 143986469 AACTGC---TC---------------------------------TGCTCCGTATATTATTTATTCTCCGAGAGGTTGGA----GA-CGTCCCTGTCC
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59161852 56 + 153482349 AACTGC---TC---------------------------------TGCTCCGTATATTATTTATTCTCCGAGAGGTTGGA----GA-CGTCCCTGTCC
i ponAbe2.chr8               C 0 C 0
s rheMac3.chr8                61688832 56 + 150158102 AACGAC---TC---------------------------------TGCTCCGCATATTACTTACTCTCCCAGAGGTTGGA----GA-CGTCCTTGTCC
i rheMac3.chr8               C 0 C 0
s macFas5.chr8                58362660 56 + 146850525 AACGAC---TC---------------------------------TGCTCCGCATATTACTTACTCTCCCAGAGGTTGGA----GA-CGTCCTTGTCC
i macFas5.chr8               C 0 C 0
s chlSab2.chr8                53283193 56 + 139301422 AACGGC---TC---------------------------------TGCTCCGCATATTACTTACTCTCCCAGAGGTTGGA----GA-CGTCCTTGTCC
i chlSab2.chr8               C 0 C 0
s calJac3.chr7                33670746 29 + 155834243 AACAAC---TC---------------------------------TGCTCCAGGAATT------TCTCCTGG--------------------------
i calJac3.chr7               C 0 C 0
s myoLuc2.GL429990              230785 47 -   2104649 GAGGGC---TT---------------------------------TGCTGGGTTAAATCCTTGCAGGCTGAAAGATTTCA----AA-CC---------
i myoLuc2.GL429990           C 0 C 0
s monDom5.chr3               512579167 53 + 527952102 TGCCATGTAGC---------------------------------TGCTGCGGACAG-------GTTCTCGGAGCCTGCG----GAGCGAGCGCGCGC
i monDom5.chr3               C 0 C 0
s ornAna1.Contig16971             8658 77 -     13060 GTGGGG---TCTGAGCAGAACCCAGGCAGACGAGGGGGAGAGGATGCTCCCCCCGTTCCTCTTCCCCC----------------A-CCTCCTTCCTT
i ornAna1.Contig16971        C 0 C 0
s taeGut2.chr28                3061448 37 +   4963201 -----------------------------------------------------GAGAGCGCGCACATCCAGCGGGCACA-------GATGGCCGCCC
i taeGut2.chr28              I 1 I 14
s melUnd1.JH556589             7673834 58 -   7952740 --------------------------CTGCCG------------CGGCATGAAGAGGATTTTCGCGTTcgggaggaagaggaagg-ggcaGCCGCCC
i melUnd1.JH556589           I 6 I 37
s chrPic2.chrUn_KK088237v1     1206453 14 +  22294289 ----------------------------------------------------------------------------------GGG-AGCTGCTGTCC
i chrPic2.chrUn_KK088237v1   C 0 I 1
s xenTro7.KB021950               75163 53 +    103910 ----------------------------------TGTGTGTCTGTGCCGGGCACACTGTGTGCT---TGGGGGGCTGTG-------TGTCTGTGCCG
i xenTro7.KB021950           C 0 C 0
e danRer10.chr19              48218196 5198 -  48790377 I
e tetNig2.chr10                6379385  0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382  0 -   6649201 I
e hapBur1.JH425491              252157  0 -   1273513 I
e neoBri1.JH422308             3491820  0 -   5414369 I
e araMac1.AOUJ01470298             637  0 -       895 I
e takFla1.KE121866              209731  0 +    220559 I
e fr3.chr10                    9064512  0 +   9126174 I
e ficAlb2.chr4A               19371809  0 +  21182716 I
e anoCar2.chr1               148577473  4 + 263920458 I
e pseHum1.KB221209            10759694 18 +  11841479 I
e zonAlb1.KB913045            12575724 5731 +  16390125 I
e colLiv1.KB375822             2439586 31 +   2691611 I
e allMis1.JH739658               38113 134 -    691381 I
e falPer1.KB391026             1266701 11 +   1688145 I
e falChe1.KB397934             1269954 11 -   4640569 I
e macEug2.GL124958               26121  0 -     59456 I
e galGal4.chrUn_AADN03023623      2011  0 -      5081 I
e geoFor1.JH740049              182930  0 -   1550430 I
e melGal1.chr7                34310641  0 -  38723565 I
e anaPla1.KB742696             1254472  0 -   1270250 I
e amaVit1.KB277496                6803 35 -     10329 I
e apaSpi1.KB929104               22324  0 +    818693 I
e cheMyd1.KB605988              134509  0 +    155857 I
e pelSin1.JH211051               23303  0 +    476004 I
e nomLeu3.chr18               81376486 308 - 104879549 I

a score=-62484.000000
s hg38.chr8_KI270814v1_alt      118829 50 +    141812 -------GAGAAGTTGGAG--GGTCCC-----TGTCTGAGGTCTGGGC---C-----AGACTGCCTTGCTTT
s panTro4.chr8                55021318 50 + 143986469 -------GAGAAGTTGGAG--GGTCCC-----TGTCTGAGGTCTGGGC---C-----AGACTGCCTTGCTTT
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59161908 50 + 153482349 -------GAGAAGTTGGAG--GGTCGC-----TGTCTGAGGTCTGGGC---C-----AGACTGCCTTGCTTT
i ponAbe2.chr8               C 0 C 0
s nomLeu3.chr18               81376794 44 - 104879549 -------GAGAGGCTGGAG-------------TGTCCAAAAGCTTGGC---C-----CGACTGCGATTTCTA
i nomLeu3.chr18              I 308 C 0
s rheMac3.chr8                61688888 49 + 150158102 --------TAGGGTGGGAG--GGTCCC-----TGTCTGAGGTCTGGGC---C-----AGACCACCTTGCTTT
i rheMac3.chr8               C 0 C 0
s macFas5.chr8                58362716 49 + 146850525 --------TAGGGTGGGAG--GGTCCC-----TGTCTGAGGTCTGGGC---C-----AGACCACCTTGCTTT
i macFas5.chr8               C 0 C 0
s chlSab2.chr8                53283249 49 + 139301422 --------TAGGGTGGGAG--GGTCCC-----TGTCTGAGGTCTGGGC---C-----AGACCACCTTGCTTT
i chlSab2.chr8               C 0 C 0
s calJac3.chr7                33670775 44 + 155834243 -------GAGAGGCCAGAG-------------TGTCCCAGGGCTTGGC---C-----AGACCCACAGCCCTA
i calJac3.chr7               C 0 C 0
s myoLuc2.GL429990              230832 49 -   2104649 -------------GCGGCG--CTGCCC-----CGCCGGATGCTGTGGC---CTCAGGAGCGTCCCTGGAGCC
i myoLuc2.GL429990           C 0 C 0
s monDom5.chr3               512579220 44 + 527952102 -------------TCGGAGATGGGCGC-----TTACT--GGTCTGGCC---C-----GGCTGACTCCGCTTC
i monDom5.chr3               C 0 C 0
s ornAna1.Contig16971             8735 50 -     13060 ---------GGGAGCGGGC--AACCCCAGCCGTGTTCAGGAGCCTGGC-AGC-----AGA-----TGGAATT
i ornAna1.Contig16971        C 0 C 0
s taeGut2.chr28                3061499 50 +   4963201 -------GCGGCCGCCGCC--GGCCTC-----AGCCACTCGCCCAGCC---C-----GGGGCTGTCGGATGA
i taeGut2.chr28              I 14 I 5
s melUnd1.JH556589             7673929 50 -   7952740 -------GCGATCTCCGGC--AG---A-----AGGCTCTGGACAAGCTGCAC-----CGCGCGGCCGCCTGC
i melUnd1.JH556589           I 37 I 12
s chrPic2.chrUn_KK088237v1     1206468 28 +  22294289 --------------CCAGG--GGGTTC-----AGGCTGAGATCCAGCT---C--------------------
i chrPic2.chrUn_KK088237v1   I 1 I 3
s xenTro7.KB021950               75216 52 +    103910 GGCACACTGTGTGCTTGGG--GCGCTG-----TGTGTGTGTGCTTGGG---------GGGCTGTGTGT----
i xenTro7.KB021950           C 0 C 0
e danRer10.chr19              48218196 5198 -  48790377 I
e tetNig2.chr10                6379385  0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382  0 -   6649201 I
e hapBur1.JH425491              252157  0 -   1273513 I
e neoBri1.JH422308             3491820  0 -   5414369 I
e araMac1.AOUJ01470298             637  0 -       895 I
e takFla1.KE121866              209731  0 +    220559 I
e fr3.chr10                    9064512  0 +   9126174 I
e ficAlb2.chr4A               19371809  0 +  21182716 I
e anoCar2.chr1               148577473  4 + 263920458 I
e pseHum1.KB221209            10759694 18 +  11841479 I
e zonAlb1.KB913045            12575724 5731 +  16390125 I
e colLiv1.KB375822             2439586 31 +   2691611 I
e allMis1.JH739658               38113 134 -    691381 I
e falPer1.KB391026             1266701 11 +   1688145 I
e falChe1.KB397934             1269954 11 -   4640569 I
e macEug2.GL124958               26121  0 -     59456 I
e galGal4.chrUn_AADN03023623      2011  0 -      5081 I
e geoFor1.JH740049              182930  0 -   1550430 I
e melGal1.chr7                34310641  0 -  38723565 I
e anaPla1.KB742696             1254472  0 -   1270250 I
e amaVit1.KB277496                6803 35 -     10329 I
e apaSpi1.KB929104               22324  0 +    818693 I
e cheMyd1.KB605988              134509  0 +    155857 I
e pelSin1.JH211051               23303  0 +    476004 I

a score=16678.000000
s hg38.chr8_KI270814v1_alt      118879 30 +    141812 CTGGTGCTG--GGC-CGGAT--GGGGGCCGG--GTGG
s panTro4.chr8                55021368 30 + 143986469 CTGGTGCTG--GGC-CGGAT--GGGGGCGGG--GTGG
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59161958 29 + 153482349 CTGGTGCTG--GGC-CGGAT--AGGGGCCGG--GT-G
i ponAbe2.chr8               C 0 C 0
s nomLeu3.chr18               81376838 32 - 104879549 CTGGTGTCA--GGG-CGGGTGCGGGGACTGA--AGAa
i nomLeu3.chr18              C 0 C 0
s rheMac3.chr8                61688937 30 + 150158102 CTGGTGCTG--GGC-CGGGT--GGGGGCTGG--GCGG
i rheMac3.chr8               C 0 C 0
s macFas5.chr8                58362765 30 + 146850525 ctggtgctg--ggc-cgggt--gggggctgg--gcgg
i macFas5.chr8               C 0 C 0
s chlSab2.chr8                53283298 30 + 139301422 CTGGTGCTG--GGC-CGGGT--GGGGGCTGG--GCGG
i chlSab2.chr8               C 0 C 0
s calJac3.chr7                33670819 32 + 155834243 CCggtgtgg--ggc-cgggtgcggggactga--agaa
i calJac3.chr7               C 0 C 0
s myoLuc2.GL429990              230881 24 -   2104649 ATAGTGCTG--GACTCGGGG--GGTGGC---------
i myoLuc2.GL429990           C 0 C 0
s monDom5.chr3               512579264 30 + 527952102 CAGAGACCC--CTT-TCGGT--GAGTGCCCC--GGGG
i monDom5.chr3               C 0 C 0
s ornAna1.Contig16971             8785 30 -     13060 CTGGGACTG--GGT-GGGAT--GGGGTCGGG--GGGA
i ornAna1.Contig16971        C 0 C 0
s taeGut2.chr28                3061554 26 +   4963201 AAGGCTCCg--agg-aggag--gaagaggag------
i taeGut2.chr28              I 5 C 0
s melUnd1.JH556589             7673991 31 -   7952740 CAGGTGCGG--CAG-GGGCT--GAAGAAGCG-CGGCG
i melUnd1.JH556589           I 12 C 0
s chrPic2.chrUn_KK088237v1     1206499 34 +  22294289 CAGGCTCTggcagg-atggg--ggggaggggtcagcg
i chrPic2.chrUn_KK088237v1   I 3 C 0
s anoCar2.chrUn_GL344195         39049 30 +     59083 CTGCCCCTG--GGC-CATGC--GTGGGCGGG--CTCG
i anoCar2.chrUn_GL344195     T 5209 C 0
s xenTro7.KB021950               75268 29 +    103910 -CTGTGCCG--GGC-ACGCT--GTGTGCTTG--GGGG
i xenTro7.KB021950           C 0 C 0
e danRer10.chr19              48218196 5198 -  48790377 I
e tetNig2.chr10                6379385  0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382  0 -   6649201 I
e hapBur1.JH425491              252157  0 -   1273513 I
e neoBri1.JH422308             3491820  0 -   5414369 I
e araMac1.AOUJ01470298             637  0 -       895 I
e takFla1.KE121866              209731  0 +    220559 I
e fr3.chr10                    9064512  0 +   9126174 I
e ficAlb2.chr4A               19371809  0 +  21182716 I
e pseHum1.KB221209            10759694 18 +  11841479 I
e zonAlb1.KB913045            12575724 5731 +  16390125 I
e colLiv1.KB375822             2439586 31 +   2691611 I
e allMis1.JH739658               38113 134 -    691381 I
e falPer1.KB391026             1266701 11 +   1688145 I
e falChe1.KB397934             1269954 11 -   4640569 I
e macEug2.GL124958               26121  0 -     59456 I
e galGal4.chrUn_AADN03023623      2011  0 -      5081 I
e geoFor1.JH740049              182930  0 -   1550430 I
e melGal1.chr7                34310641  0 -  38723565 I
e anaPla1.KB742696             1254472  0 -   1270250 I
e amaVit1.KB277496                6803 35 -     10329 I
e apaSpi1.KB929104               22324  0 +    818693 I
e cheMyd1.KB605988              134509  0 +    155857 I
e pelSin1.JH211051               23303  0 +    476004 I

a score=8009.000000
s hg38.chr8_KI270814v1_alt      118909  5 +    141812 GGGCT--------
s panTro4.chr8                55021398  5 + 143986469 GGGCT--------
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59161987  5 + 153482349 GGGCT--------
i ponAbe2.chr8               C 0 C 0
s nomLeu3.chr18               81376870  5 - 104879549 gggcg--------
i nomLeu3.chr18              C 0 C 0
s rheMac3.chr8                61688967  5 + 150158102 GGCCT--------
i rheMac3.chr8               C 0 C 0
s macFas5.chr8                58362795  5 + 146850525 ggcct--------
i macFas5.chr8               C 0 C 0
s chlSab2.chr8                53283328  5 + 139301422 GGCCT--------
i chlSab2.chr8               C 0 C 0
s calJac3.chr7                33670851  5 + 155834243 gggca--------
i calJac3.chr7               C 0 C 0
s loxAfr3.scaffold_15         39446228  5 -  55688157 GGGCT--------
i loxAfr3.scaffold_15        N 0 I 4
s triMan1.JH594766               12900  5 +   6345240 GGGCT--------
i triMan1.JH594766           N 0 I 4
s monDom5.chr3               512579294  5 + 527952102 GGGCT--------
i monDom5.chr3               C 0 C 0
s ornAna1.Contig16971             8815  5 -     13060 AGGCA--------
i ornAna1.Contig16971        C 0 C 0
s melUnd1.JH556589             7674022  5 -   7952740 TCGAc--------
i melUnd1.JH556589           C 0 C 0
s chrPic2.chrUn_KK088237v1     1206533  5 +  22294289 cTGCT--------
i chrPic2.chrUn_KK088237v1   C 0 C 0
s anoCar2.chrUn_GL344195         39079  5 +     59083 CGGCT--------
i anoCar2.chrUn_GL344195     C 0 C 0
s xenTro7.KB021950               75297 11 +    103910 --GCTGTGTGTCT
i xenTro7.KB021950           C 0 C 0
e myoLuc2.GL429990              230905  0 -   2104649 C
e danRer10.chr19              48218196 5198 -  48790377 I
e tetNig2.chr10                6379385  0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382  0 -   6649201 I
e hapBur1.JH425491              252157  0 -   1273513 I
e neoBri1.JH422308             3491820  0 -   5414369 I
e araMac1.AOUJ01470298             637  0 -       895 I
e takFla1.KE121866              209731  0 +    220559 I
e fr3.chr10                    9064512  0 +   9126174 I
e ficAlb2.chr4A               19371809  0 +  21182716 I
e pseHum1.KB221209            10759694 18 +  11841479 I
e zonAlb1.KB913045            12575724 5731 +  16390125 I
e colLiv1.KB375822             2439586 31 +   2691611 I
e allMis1.JH739658               38113 134 -    691381 I
e falPer1.KB391026             1266701 11 +   1688145 I
e falChe1.KB397934             1269954 11 -   4640569 I
e macEug2.GL124958               26121  0 -     59456 I
e galGal4.chrUn_AADN03023623      2011  0 -      5081 I
e geoFor1.JH740049              182930  0 -   1550430 I
e melGal1.chr7                34310641  0 -  38723565 I
e anaPla1.KB742696             1254472  0 -   1270250 I
e amaVit1.KB277496                6803 35 -     10329 I
e apaSpi1.KB929104               22324  0 +    818693 I
e cheMyd1.KB605988              134509  0 +    155857 I
e pelSin1.JH211051               23303  0 +    476004 I
e taeGut2.chr28                3061580  0 +   4963201 C

a score=23426.000000
s hg38.chr8_KI270814v1_alt      118914 3 +    141812 GGG
s panTro4.chr8                55021403 3 + 143986469 GGA
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59161992 3 + 153482349 GGG
i ponAbe2.chr8               C 0 C 0
s nomLeu3.chr18               81376875 3 - 104879549 agg
i nomLeu3.chr18              C 0 C 0
s rheMac3.chr8                61688972 3 + 150158102 GGG
i rheMac3.chr8               C 0 C 0
s macFas5.chr8                58362800 3 + 146850525 ggg
i macFas5.chr8               C 0 C 0
s chlSab2.chr8                53283333 3 + 139301422 GGG
i chlSab2.chr8               C 0 C 0
s calJac3.chr7                33670856 3 + 155834243 agg
i calJac3.chr7               C 0 C 0
s loxAfr3.scaffold_15         39446237 3 -  55688157 TGG
i loxAfr3.scaffold_15        I 4 C 0
s triMan1.JH594766               12909 3 +   6345240 TGG
i triMan1.JH594766           I 4 C 0
s monDom5.chr3               512579299 3 + 527952102 GGG
i monDom5.chr3               C 0 C 0
s ornAna1.Contig16971             8820 3 -     13060 GGG
i ornAna1.Contig16971        C 0 n 0
s taeGut2.chr28                3061580 3 +   4963201 gag
i taeGut2.chr28              C 0 C 0
s melUnd1.JH556589             7674027 3 -   7952740 ggg
i melUnd1.JH556589           C 0 C 0
s chrPic2.chrUn_KK088237v1     1206538 3 +  22294289 GGG
i chrPic2.chrUn_KK088237v1   C 0 C 0
s anoCar2.chrUn_GL344195         39084 3 +     59083 GGG
i anoCar2.chrUn_GL344195     C 0 C 0
s xenTro7.KB021950               75308 3 +    103910 GTG
i xenTro7.KB021950           C 0 C 0
e myoLuc2.GL429990              230905 0 -   2104649 C
e danRer10.chr19              48218196 5198 -  48790377 I
e tetNig2.chr10                6379385 0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382 0 -   6649201 I
e hapBur1.JH425491              252157 0 -   1273513 I
e neoBri1.JH422308             3491820 0 -   5414369 I
e araMac1.AOUJ01470298             637 0 -       895 I
e takFla1.KE121866              209731 0 +    220559 I
e fr3.chr10                    9064512 0 +   9126174 I
e ficAlb2.chr4A               19371809 0 +  21182716 I
e pseHum1.KB221209            10759694 18 +  11841479 I
e zonAlb1.KB913045            12575724 5731 +  16390125 I
e colLiv1.KB375822             2439586 31 +   2691611 I
e allMis1.JH739658               38113 134 -    691381 I
e falPer1.KB391026             1266701 11 +   1688145 I
e falChe1.KB397934             1269954 11 -   4640569 I
e macEug2.GL124958               26121 0 -     59456 I
e galGal4.chrUn_AADN03023623      2011 0 -      5081 I
e geoFor1.JH740049              182930 0 -   1550430 I
e melGal1.chr7                34310641 0 -  38723565 I
e anaPla1.KB742696             1254472 0 -   1270250 I
e amaVit1.KB277496                6803 35 -     10329 I
e apaSpi1.KB929104               22324 0 +    818693 I
e cheMyd1.KB605988              134509 0 +    155857 I
e pelSin1.JH211051               23303 0 +    476004 I

a score=-32855.000000
s hg38.chr8_KI270814v1_alt      118917  5 +    141812 CTGG------------G
s panTro4.chr8                55021406  5 + 143986469 CTGG------------G
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59161995  5 + 153482349 CTGG------------G
i ponAbe2.chr8               C 0 C 0
s nomLeu3.chr18               81376878 17 - 104879549 gcgagcggcggggactg
i nomLeu3.chr18              C 0 C 0
s rheMac3.chr8                61688975  5 + 150158102 CTAG------------G
i rheMac3.chr8               C 0 C 0
s macFas5.chr8                58362803  5 + 146850525 ctag------------g
i macFas5.chr8               C 0 C 0
s chlSab2.chr8                53283336  5 + 139301422 CTGG------------G
i chlSab2.chr8               C 0 C 0
s calJac3.chr7                33670859  7 + 155834243 gcgagc----------g
i calJac3.chr7               C 0 C 0
s camFer1.KB018161                4867  4 -     34802 -GAG------------G
i camFer1.KB018161           N 0 I 4
s myoLuc2.GL429990              230905  1 -   2104649 ----------------G
i myoLuc2.GL429990           C 0 I 1
s loxAfr3.scaffold_15         39446240  1 -  55688157 C----------------
i loxAfr3.scaffold_15        C 0 C 0
s triMan1.JH594766               12912  1 +   6345240 C----------------
i triMan1.JH594766           C 0 C 0
s monDom5.chr3               512579302  5 + 527952102 CTGG------------G
i monDom5.chr3               C 0 C 0
s taeGut2.chr28                3061583  4 +   4963201 -cgc------------g
i taeGut2.chr28              C 0 I 2
s melUnd1.JH556589             7674030  4 -   7952740 -cgg------------g
i melUnd1.JH556589           C 0 I 2
s chrPic2.chrUn_KK088237v1     1206541  4 +  22294289 -TGG------------G
i chrPic2.chrUn_KK088237v1   C 0 I 2
s anoCar2.chrUn_GL344195         39087  4 +     59083 -CTT------------A
i anoCar2.chrUn_GL344195     C 0 I 2
s xenTro7.KB021950               75311  5 +    103910 CCGG------------G
i xenTro7.KB021950           C 0 C 0
e danRer10.chr19              48218196 5198 -  48790377 I
e ornAna1.Contig16971             8823  0 -     13060 I
e tetNig2.chr10                6379385  0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382  0 -   6649201 I
e hapBur1.JH425491              252157  0 -   1273513 I
e neoBri1.JH422308             3491820  0 -   5414369 I
e araMac1.AOUJ01470298             637  0 -       895 I
e takFla1.KE121866              209731  0 +    220559 I
e fr3.chr10                    9064512  0 +   9126174 I
e ficAlb2.chr4A               19371809  0 +  21182716 I
e pseHum1.KB221209            10759694 18 +  11841479 I
e zonAlb1.KB913045            12575724 5731 +  16390125 I
e colLiv1.KB375822             2439586 31 +   2691611 I
e allMis1.JH739658               38113 134 -    691381 I
e falPer1.KB391026             1266701 11 +   1688145 I
e falChe1.KB397934             1269954 11 -   4640569 I
e macEug2.GL124958               26121  0 -     59456 I
e galGal4.chrUn_AADN03023623      2011  0 -      5081 I
e geoFor1.JH740049              182930  0 -   1550430 I
e melGal1.chr7                34310641  0 -  38723565 I
e anaPla1.KB742696             1254472  0 -   1270250 I
e amaVit1.KB277496                6803 35 -     10329 I
e apaSpi1.KB929104               22324  0 +    818693 I
e cheMyd1.KB605988              134509  0 +    155857 I
e pelSin1.JH211051               23303  0 +    476004 I

a score=957.000000
s hg38.chr8_KI270814v1_alt      118922 1 +    141812 -G
s panTro4.chr8                55021411 1 + 143986469 -G
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59162000 1 + 153482349 -G
i ponAbe2.chr8               C 0 C 0
s nomLeu3.chr18               81376895 1 - 104879549 -g
i nomLeu3.chr18              C 0 C 0
s rheMac3.chr8                61688980 1 + 150158102 -G
i rheMac3.chr8               C 0 C 0
s macFas5.chr8                58362808 1 + 146850525 -g
i macFas5.chr8               C 0 C 0
s chlSab2.chr8                53283341 1 + 139301422 -G
i chlSab2.chr8               C 0 C 0
s calJac3.chr7                33670866 1 + 155834243 -g
i calJac3.chr7               C 0 C 0
s vicPac2.KB632521             1176284 1 -   7152218 -G
i vicPac2.KB632521           N 0 C 0
s camFer1.KB018161                4875 1 -     34802 -G
i camFer1.KB018161           I 4 C 0
s myoLuc2.GL429990              230907 1 -   2104649 -G
i myoLuc2.GL429990           I 1 C 0
s loxAfr3.scaffold_15         39446241 1 -  55688157 -G
i loxAfr3.scaffold_15        C 0 I 3
s triMan1.JH594766               12913 1 +   6345240 -G
i triMan1.JH594766           C 0 I 3
s monDom5.chr3               512579307 1 + 527952102 -A
i monDom5.chr3               C 0 C 0
s xenTro7.KB021950               75316 1 +    103910 C-
i xenTro7.KB021950           C 0 C 0
e danRer10.chr19              48218196 5198 -  48790377 I
e ornAna1.Contig16971             8823 0 -     13060 I
e tetNig2.chr10                6379385 0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382 0 -   6649201 I
e hapBur1.JH425491              252157 0 -   1273513 I
e neoBri1.JH422308             3491820 0 -   5414369 I
e araMac1.AOUJ01470298             637 0 -       895 I
e takFla1.KE121866              209731 0 +    220559 I
e fr3.chr10                    9064512 0 +   9126174 I
e ficAlb2.chr4A               19371809 0 +  21182716 I
e anoCar2.chrUn_GL344195         39091 2 +     59083 I
e pseHum1.KB221209            10759694 18 +  11841479 I
e zonAlb1.KB913045            12575724 5731 +  16390125 I
e colLiv1.KB375822             2439586 31 +   2691611 I
e allMis1.JH739658               38113 134 -    691381 I
e falPer1.KB391026             1266701 11 +   1688145 I
e falChe1.KB397934             1269954 11 -   4640569 I
e macEug2.GL124958               26121 0 -     59456 I
e galGal4.chrUn_AADN03023623      2011 0 -      5081 I
e geoFor1.JH740049              182930 0 -   1550430 I
e melGal1.chr7                34310641 0 -  38723565 I
e anaPla1.KB742696             1254472 0 -   1270250 I
e amaVit1.KB277496                6803 35 -     10329 I
e apaSpi1.KB929104               22324 0 +    818693 I
e cheMyd1.KB605988              134509 0 +    155857 I
e chrPic2.chrUn_KK088237v1     1206545 2 +  22294289 I
e pelSin1.JH211051               23303 0 +    476004 I
e melUnd1.JH556589             7674034 2 -   7952740 I
e taeGut2.chr28                3061587 2 +   4963201 I

a score=-56639.000000
s hg38.chr8_KI270814v1_alt      118923 15 +    141812 -----GAAGGG---------------CG---AGG-----------------------GCGA
s panTro4.chr8                55021412 15 + 143986469 -----GAAGGG---------------CG---AGG-----------------------GCGA
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59162001 15 + 153482349 -----GAAGGG---------------CA---AGG-----------------------GCGA
i ponAbe2.chr8               C 0 C 0
s nomLeu3.chr18               81376896 18 - 104879549 -----gaaggg---------------cgagcagc-----------------------gaga
i nomLeu3.chr18              C 0 C 0
s rheMac3.chr8                61688981 15 + 150158102 -----GAAGGG---------------CG---AGG-----------------------GCGA
i rheMac3.chr8               C 0 C 0
s macFas5.chr8                58362809 15 + 146850525 -----gaaggg---------------cg---agg-----------------------gcga
i macFas5.chr8               C 0 C 0
s chlSab2.chr8                53283342 15 + 139301422 -----GAAGGG---------------CG---AGG-----------------------GCGA
i chlSab2.chr8               C 0 C 0
s calJac3.chr7                33670867 15 + 155834243 -----ctgggg---------------cg---agg-----------------------gcga
i calJac3.chr7               C 0 C 0
s vicPac2.KB632521             1176285 14 -   7152218 -----AAAAGC---------------TG---AGG-----------------------GGG-
i vicPac2.KB632521           C 0 I 1
s camFer1.KB018161                4876 14 -     34802 -----AAAAGC---------------TG---AGG-----------------------GGG-
i camFer1.KB018161           C 0 I 1
s cerSim1.JH767738             9901482 14 +  34209287 -----AAAAGC---------------GG---AGG-----------------------GGA-
i cerSim1.JH767738           N 0 I 1
s myoLuc2.GL429990              230908 14 -   2104649 -----GAAAGC---------------TG---AGG-----------------------GGA-
i myoLuc2.GL429990           C 0 I 1
s loxAfr3.scaffold_15         39446245 15 -  55688157 -----AAAAGC---------------CG---AGG-----------------------GTGA
i loxAfr3.scaffold_15        I 3 C 0
s triMan1.JH594766               12917 15 +   6345240 -----GAAAGC---------------CG---AGG-----------------------GTGA
i triMan1.JH594766           I 3 C 0
s monDom5.chr3               512579308 15 + 527952102 -----GAGGGG---------------CG---AAG-----------------------GCAT
i monDom5.chr3               C 0 C 0
s taeGut2.chr28                3061589 12 +   4963201 -------gagg---------------ag---gag-----------------------gaa-
i taeGut2.chr28              I 2 C 0
s melUnd1.JH556589             7674036 12 -   7952740 -------aagg---------------cg---gag-----------------------cgg-
i melUnd1.JH556589           I 2 C 0
s chrPic2.chrUn_KK088237v1     1206547 50 +  22294289 -------GGGGTCACCCCCAACTCTCTG---GGGTCTGCCCCACACACCCAATGCCATCA-
i chrPic2.chrUn_KK088237v1   I 2 C 0
s anoCar2.chrUn_GL344195         39093 27 +     59083 -------GGGAGGCCTCTACAAGGTCCG---GAG-----------------------CAA-
i anoCar2.chrUn_GL344195     I 2 C 0
s xenTro7.KB021950               75317 15 +    103910 GCGCTGTGTGC---------------TT---GG----------------------------
i xenTro7.KB021950           C 0 C 0
e danRer10.chr19              48218196 5198 -  48790377 I
e ornAna1.Contig16971             8823  0 -     13060 I
e tetNig2.chr10                6379385  0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382  0 -   6649201 I
e hapBur1.JH425491              252157  0 -   1273513 I
e neoBri1.JH422308             3491820  0 -   5414369 I
e araMac1.AOUJ01470298             637  0 -       895 I
e takFla1.KE121866              209731  0 +    220559 I
e fr3.chr10                    9064512  0 +   9126174 I
e ficAlb2.chr4A               19371809  0 +  21182716 I
e pseHum1.KB221209            10759694 18 +  11841479 I
e zonAlb1.KB913045            12575724 5731 +  16390125 I
e colLiv1.KB375822             2439586 31 +   2691611 I
e allMis1.JH739658               38113 134 -    691381 I
e falPer1.KB391026             1266701 11 +   1688145 I
e falChe1.KB397934             1269954 11 -   4640569 I
e macEug2.GL124958               26121  0 -     59456 I
e galGal4.chrUn_AADN03023623      2011  0 -      5081 I
e geoFor1.JH740049              182930  0 -   1550430 I
e melGal1.chr7                34310641  0 -  38723565 I
e anaPla1.KB742696             1254472  0 -   1270250 I
e amaVit1.KB277496                6803 35 -     10329 I
e apaSpi1.KB929104               22324  0 +    818693 I
e cheMyd1.KB605988              134509  0 +    155857 I
e pelSin1.JH211051               23303  0 +    476004 I

a score=-26549.000000
s hg38.chr8_KI270814v1_alt      118938 24 +    141812 GTTGTGGCGTCTCTGAAGC---CAATA
s panTro4.chr8                55021427 24 + 143986469 GTTGTGGCGTCTCTGAAGC---CAATA
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8                59162016 24 + 153482349 GTTGTGGCGTCTCTGAAGC---CGATA
i ponAbe2.chr8               C 0 C 0
s nomLeu3.chr18               81376914 24 - 104879549 ggcgcgggcTCTCTCTAGC---AGGTG
i nomLeu3.chr18              C 0 C 0
s rheMac3.chr8                61688996 21 + 150158102 GTTGTGGCGTCTCTGAAGC---CG---
i rheMac3.chr8               C 0 C 0
s macFas5.chr8                58362824 21 + 146850525 gTTGTGGCGTCTCTGAAGC---CG---
i macFas5.chr8               C 0 C 0
s chlSab2.chr8                53283357 21 + 139301422 ATTGTGGCGTCTCTGAAGC---CG---
i chlSab2.chr8               C 0 C 0
s calJac3.chr7                33670882 18 + 155834243 g-CGGGAGGCC-----AGC---AGGTG
i calJac3.chr7               C 0 C 0
s vicPac2.KB632521             1176300 24 -   7152218 GGTGAGCGGTGTCTGAAGC---TGGTA
i vicPac2.KB632521           I 1 C 0
s camFer1.KB018161                4891 24 -     34802 GGTGAGCGGTGTCTGAAGC---CGGTA
i camFer1.KB018161           I 1 C 0
s cerSim1.JH767738             9901497 24 +  34209287 GGCGAGATGTCTCTGAAGC---CCGTA
i cerSim1.JH767738           I 1 C 0
s pteAle1.KB031146             3116050 24 -   3193751 GCTGAGGTGCCTCTGCAGC---CCCTG
i pteAle1.KB031146           N 0 C 0
s myoLuc2.GL429990              230923 24 -   2104649 GGTGAGGCTTCGCTGAAGC---CATCA
i myoLuc2.GL429990           I 1 C 0
s loxAfr3.scaffold_15         39446260 24 -  55688157 GGTGAAGCGTCTTTGAAAC---TTGTC
i loxAfr3.scaffold_15        C 0 C 0
s triMan1.JH594766               12932 24 +   6345240 GGTGAAGTGCCTTTGAAAC---TTGTC
i triMan1.JH594766           C 0 C 0
s monDom5.chr3               512579323 12 + 527952102 --------GTGGCCGGGGC---C----
i monDom5.chr3               C 0 C 0
s taeGut2.chr28                3061601  7 +   4963201 --------------gatggcg------
i taeGut2.chr28              C 0 C 0
s melUnd1.JH556589             7674048  5 -   7952740 --------------gaagg--------
i melUnd1.JH556589           C 0 C 0
s chrPic2.chrUn_KK088237v1     1206597  5 +  22294289 --------------gatgg--------
i chrPic2.chrUn_KK088237v1   C 0 C 0
s anoCar2.chrUn_GL344195         39120  8 +     59083 --------------AGAGCTGC-----
i anoCar2.chrUn_GL344195     C 0 C 0
s xenTro7.KB021950               75332 24 +    103910 GGCGCTGTGTGTCTGTGCC---GGGCG
i xenTro7.KB021950           C 0 I 1
e danRer10.chr19              48218196 5198 -  48790377 I
e ornAna1.Contig16971             8823  0 -     13060 I
e tetNig2.chr10                6379385  0 +  13272281 I
e punNye1.JH419232             4767720 338 +   5065651 T
e mayZeb1.JH720522              609382  0 -   6649201 I
e hapBur1.JH425491              252157  0 -   1273513 I
e neoBri1.JH422308             3491820  0 -   5414369 I
e araMac1.AOUJ01470298             637  0 -       895 I
e takFla1.KE121866              209731  0 +    220559 I
e fr3.chr10                    9064512  0 +   9126174 I
e ficAlb2.chr4A               19371809  0 +  21182716 I
e pseHum1.KB221209            10759694 18 +  11841479 I
e zonAlb1.KB913045            12575724 5731 +  16390125 I
e colLiv1.KB375822             2439586 31 +   2691611 I
e allMis1.JH739658               38113 134 -    691381 I
e falPer1.KB391026             1266701 11 +   1688145 I
e falChe1.KB397934             1269954 11 -   4640569 I
e macEug2.GL124958               26121  0 -     59456 I
e galGal4.chrUn_AADN03023623      2011  0 -      5081 I
e geoFor1.JH740049              182930  0 -   1550430 I
e melGal1.chr7                34310641  0 -  38723565 I
e anaPla1.KB742696             1254472  0 -   1270250 I
e amaVit1.KB277496                6803 35 -     10329 I
e apaSpi1.KB929104               22324  0 +    818693 I
e cheMyd1.KB605988              134509  0 +    155857 I
e pelSin1.JH211051               23303  0 +    476004 I

a score=-44784.000000
s hg38.chr8_KI270814v1_alt        118962 47 +    141812 GCTG-G-----------GCCATGAAGATGATCTTG------GCTGTGGAGA---------------GCCAGAAGGGCCAG
s panTro4.chr8                  55021451 47 + 143986469 GCTG-G-----------GCCATGAAGATGATCTTG------GCTGTGGAGA---------------GCCAGAAGGGCCAG
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59162040 47 + 153482349 GCCT-G-----------GCCATGAAGAAGATCTTG------GCTGTGGAAA---------------GCCAGAAGGGCCAA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81376938 54 - 104879549 GCTGCA-----------GCCATGGAGAGGCTCTCTGCCGCCGCTGTCAAGG---------------GCGAGACGGACCCG
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61689017 43 + 150158102 -----G-----------GCCATGAAGAAGATCGTG------GCTGTGGAGA---------------GCCAGAAGGGCCAG
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58362845 43 + 146850525 -----G-----------GCCATGAAGAAGATCGTG------GCTGTGGAGA---------------GCCAGAAGGGCCAG
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53283378 40 + 139301422 -----G-----------GCCAT---GAAGATCGTG------GCTGTGGAGA---------------GCCAGAAGGGCCAG
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33670900 54 + 155834243 GCCGCA-----------GCCATGGAGAGGCTCTCAGCAGCCGCTTTCTAGG---------------GCCTGTAGGACTCG
i calJac3.chr7                 C 0 C 0
s vicPac2.KB632521               1176324 48 -   7152218 GGCCCT-----------ATGATGAAGAAGATTTTT------CACTTCGGGA---------------ATAGGAAGGGCGAG
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                  4915 48 -     34802 GGCCCT-----------ATGATGAAGAAGATTTTT------CACTTCGGGA---------------GTAGGAAGGGCGAG
i camFer1.KB018161             C 0 C 0
s cerSim1.JH767738               9901521 48 +  34209287 GGCTCT-----------GCGATGAAGAAGATTTTT------GGCTTTCGGA---------------GTAGGAAGGGCGAG
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3116074 59 -   3193751 GGCTCTCCGTAGACTCAGCTATGAAGAAGATTTTT------GGCTTTGGGA---------------GTCGGAAGGGCGAG
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                230947 50 -   2104649 GGCGCTCT---------GCGATGAAGAAGATTTTT------GGCTTTGGGA---------------GTAGAAAGGGCGTG
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39446284 48 -  55688157 GCCTTT-----------GCGATGAAGAAGATTTTT------GGCTTCGGGA---------------GTAAGAAGGGCGAG
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 12956 48 +   6345240 GCCTCT-----------GGGATGAAGAAGATTTTT------GGCTTCGGGA---------------GTAAGAAGGGCGAG
i triMan1.JH594766             C 0 C 0
s monDom5.chr3                 512579335 33 + 527952102 -----------------GCCGTGGGGGGCCC------------------------------CTGCTGAGGCCCGGGCCGA
i monDom5.chr3                 C 0 C 0
s sarHar1.chr5_GL861990_random     13603 62 +     96199 ------------GCCTGGCCTTGAAGCTTACCTCC------AAGATGAAGAAGATTTTCAACTTCTGCAAGAAGGACCAA
i sarHar1.chr5_GL861990_random N 0 C 0
s taeGut2.chr28                  3061608 43 +   4963201 -gcggg-----------taccagcaggagatgggc------tctgaggagg-------------------aggaggaCCT
i taeGut2.chr28                C 0 I 82
s melUnd1.JH556589               7674053 45 -   7952740 ---ggg-----------gagcggtggagggagagc------gctgaggcgg---------------ggtcgggaggCTCA
i melUnd1.JH556589             C 0 I 16
s chrPic2.chrUn_KK088237v1       1206602 47 +  22294289 -gcagg-----------gggctgcaccACCCTGCT------GCTGAGGGGC---------------ACGAGGGAGAAGCG
i chrPic2.chrUn_KK088237v1     C 0 I 13
s anoCar2.chrUn_GL344195           39128 35 +     59083 -CCAGG--------------CTGCACCGGGCCGCC------GCCGAAGGGG---------------ACCTG---------
i anoCar2.chrUn_GL344195       C 0 I 5
s xenTro7.KB021950                 75357 34 +    103910 GCTGTG-----------TGCTTGGGGCGCTGTGTG------TCTGTGCCGG-----------------------------
i xenTro7.KB021950             I 1 C 0
e danRer10.chr19                48218196 5198 -  48790377 I
e ornAna1.Contig16971               8823  0 -     13060 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE121866                209731  0 +    220559 I
e fr3.chr10                      9064512  0 +   9126174 I
e ficAlb2.chr4A                 19371809  0 +  21182716 I
e pseHum1.KB221209              10759694 18 +  11841479 I
e zonAlb1.KB913045              12575724 5731 +  16390125 I
e colLiv1.KB375822               2439586 31 +   2691611 I
e allMis1.JH739658                 38113 134 -    691381 I
e falPer1.KB391026               1266701 11 +   1688145 I
e falChe1.KB397934               1269954 11 -   4640569 I
e macEug2.GL124958                 26121  0 -     59456 I
e galGal4.chrUn_AADN03023623        2011  0 -      5081 I
e geoFor1.JH740049                182930  0 -   1550430 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.KB277496                  6803 35 -     10329 I
e apaSpi1.KB929104                 22324  0 +    818693 I
e cheMyd1.KB605988                134509  0 +    155857 I
e pelSin1.JH211051                 23303  0 +    476004 I

a score=34799.000000
s hg38.chr8_KI270814v1_alt        119009 18 +    141812 GTGCGC-CTGAGCTCCTGG
s panTro4.chr8                  55021498 18 + 143986469 GTGCGC-CTGAGCTCCTGG
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59162087 18 + 153482349 GTGCGC-CTGAGCTCCTGA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81376992 18 - 104879549 GAGCGC-CTGAGCCCCTTC
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61689060 18 + 150158102 GTGTGC-CTGAGCTCCTGG
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58362888 18 + 146850525 GTGTGC-CTGAGCTCCTGG
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53283418 18 + 139301422 GTGTGC-CTGAGCTCTTGG
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33670954 18 + 155834243 CGCCGC-CAAAGTCCCTTC
i calJac3.chr7                 C 0 C 0
s vicPac2.KB632521               1176372 18 -   7152218 TCGCCC-TTGGGCTCTTCC
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                  4963 18 -     34802 TCGCCC-TTGGGCTCCTCC
i camFer1.KB018161             C 0 C 0
s cerSim1.JH767738               9901569 18 +  34209287 TCGCCC-CGGGTCTCCCTC
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3116133 18 -   3193751 TCGCCC-TTGGGCTCCTTA
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                230997 18 -   2104649 TCGCCC-TTGGCCGCGTCC
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39446332 18 -  55688157 TCGCCC-TTGGGCTCCTCC
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 13004 18 +   6345240 TCGCCC-TTGGGCTCGTCC
i triMan1.JH594766             C 0 C 0
s monDom5.chr3                 512579368 15 + 527952102 GCCCCG----GGGCTCTCT
i monDom5.chr3                 C 0 C 0
s sarHar1.chr5_GL861990_random     13665 18 +     96199 TCTCCA-TCTAGCCCCTCC
i sarHar1.chr5_GL861990_random C 0 C 0
s melUnd1.JH556589               7674114 13 -   7952740 CCGC------AGCCCCCGG
i melUnd1.JH556589             I 16 I 5368
s chrPic2.chrUn_KK088237v1       1206662  9 +  22294289 ----------Agcccccca
i chrPic2.chrUn_KK088237v1     I 13 C 0
s xenTro7.KB021950                 75391 17 +    103910 --GCGCGCTGTGTGCTTGG
i xenTro7.KB021950             C 0 C 0
e danRer10.chr19                48218196 5198 -  48790377 I
e ornAna1.Contig16971               8823  0 -     13060 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE121866                209731  0 +    220559 I
e fr3.chr10                      9064512  0 +   9126174 I
e ficAlb2.chr4A                 19371809  0 +  21182716 I
e anoCar2.chrUn_GL344195           39163  5 +     59083 I
e pseHum1.KB221209              10759694 18 +  11841479 I
e zonAlb1.KB913045              12575724 5731 +  16390125 I
e colLiv1.KB375822               2439586 31 +   2691611 I
e allMis1.JH739658                 38113 134 -    691381 I
e falPer1.KB391026               1266701 11 +   1688145 I
e falChe1.KB397934               1269954 11 -   4640569 I
e macEug2.GL124958                 26121  0 -     59456 I
e galGal4.chrUn_AADN03023623        2011  0 -      5081 I
e geoFor1.JH740049                182930  0 -   1550430 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.KB277496                  6803 35 -     10329 I
e apaSpi1.KB929104                 22324  0 +    818693 I
e cheMyd1.KB605988                134509  0 +    155857 I
e pelSin1.JH211051                 23303  0 +    476004 I
e taeGut2.chr28                  3061651 82 +   4963201 I

a score=-139990.000000
s hg38.chr8_KI270814v1_alt        119027 10 +    141812 A---------------------------------------GTAGTAA------CT
s panTro4.chr8                  55021516  7 + 143986469 ------------------------------------------AGTAA------CT
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59162105  7 + 153482349 ------------------------------------------AGTAA------CT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81377010 13 - 104879549 ------------------------------------------AGTCAGCTGGTCT
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61689078  7 + 150158102 ------------------------------------------AGTAA------CC
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58362906  7 + 146850525 ------------------------------------------AGTAA------CC
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53283436  7 + 139301422 ------------------------------------------GGTAA------CC
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33670972 13 + 155834243 ------------------------------------------AGTCAGCTGGTCT
i calJac3.chr7                 C 0 C 0
s vicPac2.KB632521               1176390 28 -   7152218 ACAAGCCCCGGGAGAGACCGC---------------------AGGAA------CA
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                  4981 28 -     34802 ACAAGCCCCGGGAGAGACAGC---------------------AGGAG------CA
i camFer1.KB018161             C 0 C 0
s cerSim1.JH767738               9901587 49 +  34209287 ACCAGCCGGAGGAGGGCCGGCGCGGGCGTCGGGCATGAGAGTAGTGA------TG
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3116151 49 -   3193751 ACCAGCCGCCAGAGGACCGGCGTGGGTGTCAGGCCTGAGACTGGTAA------TA
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                231015 46 -   2104649 ACCAGCCCC---GGGCGCAGCCTGGGAGAGAGGCCGCCGGGTGGTGG------CA
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39446350 49 -  55688157 ATCAGCCCGAGGAGGGACAGCGCGGGCGTCCGGCAAGAGAATAGTAA------AA
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 13022 49 +   6345240 ACCAGCCCGAGGAGGGACAGCGCGGGCGTCGGGCGTGAGAACAGTAA------AA
i triMan1.JH594766             C 0 C 0
s monDom5.chr3                 512579383 19 + 527952102 GAGCTCCTGGCT------------------------------AGTGA------CT
i monDom5.chr3                 C 0 N 0
s sarHar1.chr5_GL861990_random     13683 19 +     96199 ATCAAGCTGCCG------------------------------AGTTA------CT
i sarHar1.chr5_GL861990_random C 0 I 11
s chrPic2.chrUn_KK088237v1       1206671  3 +  22294289 ------------------------------------------cgt----------
i chrPic2.chrUn_KK088237v1     C 0 C 0
s anoCar2.chrUn_GL344195           39168  3 +     59083 ------------------------------------------AGT----------
i anoCar2.chrUn_GL344195       I 5 C 0
s xenTro7.KB021950                 75408 10 +    103910 ------------------------GGTGCTG-----------TGT----------
i xenTro7.KB021950             C 0 C 0
e danRer10.chr19                48218196 5198 -  48790377 I
e ornAna1.Contig16971               8823  0 -     13060 I
e tetNig2.chr10                  6379385  0 +  13272281 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE121866                209731  0 +    220559 I
e fr3.chr10                      9064512  0 +   9126174 I
e ficAlb2.chr4A                 19371809  0 +  21182716 I
e pseHum1.KB221209              10759694 18 +  11841479 I
e zonAlb1.KB913045              12575724 5731 +  16390125 I
e colLiv1.KB375822               2439586 31 +   2691611 I
e allMis1.JH739658                 38113 134 -    691381 I
e falPer1.KB391026               1266701 11 +   1688145 I
e falChe1.KB397934               1269954 11 -   4640569 I
e macEug2.GL124958                 26121  0 -     59456 I
e galGal4.chrUn_AADN03023623        2011  0 -      5081 I
e geoFor1.JH740049                182930  0 -   1550430 I
e melGal1.chr7                  34310641  0 -  38723565 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.KB277496                  6803 35 -     10329 I
e apaSpi1.KB929104                 22324  0 +    818693 I
e cheMyd1.KB605988                134509  0 +    155857 I
e pelSin1.JH211051                 23303  0 +    476004 I
e melUnd1.JH556589               7674127 5368 -   7952740 I
e taeGut2.chr28                  3061651 82 +   4963201 I

a score=27076.000000
s hg38.chr8_KI270814v1_alt       119037 24 +    141812 GCATCTTCTCTGACCCCTG-------G-TACC
s panTro4.chr8                 55021523 24 + 143986469 GCATATTCTCTGACCCCTT-------G-TACC
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59162112 24 + 153482349 GCATCTTCTCTGACCCCTG-------G-TACC
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                81377023 21 - 104879549 ACACCAACAACGACTCT-----------TACG
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                 61689085 24 + 150158102 ACATCTTCTCTGACCCCTG-------G-TACC
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                 58362913 24 + 146850525 ACATCTTCTCTGACCCCTG-------G-TACC
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                 53283443 24 + 139301422 ACATCTTCTCTGACCCCTG-------G-TACC
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                 33670985 21 + 155834243 ACACCAGCAACGACTCT-----------TATG
i calJac3.chr7                 C 0 C 0
s vicPac2.KB632521              1176418 24 -   7152218 GTGGTAACTCCCCACCTGG-------G-TACC
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                 5009 24 -     34802 GCGGTAACTCCCCGCCTAG-------G-TACC
i camFer1.KB018161             C 0 C 0
s cerSim1.JH767738              9901636 24 +  34209287 GAGTCAGCTCACGGCCCGG-------G-TACC
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146              3116200 24 -   3193751 GAGTCACCTTGGGGCCCGG-------G-TACC
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990               231061 24 -   2104649 GAGGCGCCTCGCAGCGCGG-------G-TACC
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15          39446399 24 -  55688157 GCGTTAACTCACAGCCCGG-------G-TACC
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                13071 24 +   6345240 GCGTCAACTCACAGCCCGG-------G-TACC
i triMan1.JH594766             C 0 C 0
s sarHar1.chr5_GL861990_random    13713 25 +     96199 ACACCAGACCTCACCCCAG-------GATACC
i sarHar1.chr5_GL861990_random I 11 C 0
s chrPic2.chrUn_KK088237v1      1206674 21 +  22294289 gggccccctc---ccctaa-------a-tgac
i chrPic2.chrUn_KK088237v1     C 0 I 40
s anoCar2.chrUn_GL344195          39171 21 +     59083 GCGGCATCTC---CTGCGG-------A-GGCA
i anoCar2.chrUn_GL344195       C 0 I 2
s xenTro7.KB021950                75418 31 +    103910 GTCTGTGCTTGGGGCGCTGTGTGTCTG-TGCC
i xenTro7.KB021950             C 0 C 0
e danRer10.chr19               48218196 5198 -  48790377 I
e ornAna1.Contig16971              8823  0 -     13060 I
e tetNig2.chr10                 6379385  0 +  13272281 I
e punNye1.JH419232              4767720 338 +   5065651 T
e mayZeb1.JH720522               609382  0 -   6649201 I
e hapBur1.JH425491               252157  0 -   1273513 I
e neoBri1.JH422308              3491820  0 -   5414369 I
e araMac1.AOUJ01470298              637  0 -       895 I
e takFla1.KE121866               209731  0 +    220559 I
e fr3.chr10                     9064512  0 +   9126174 I
e ficAlb2.chr4A                19371809  0 +  21182716 I
e pseHum1.KB221209             10759694 18 +  11841479 I
e zonAlb1.KB913045             12575724 5731 +  16390125 I
e colLiv1.KB375822              2439586 31 +   2691611 I
e allMis1.JH739658                38113 134 -    691381 I
e falPer1.KB391026              1266701 11 +   1688145 I
e falChe1.KB397934              1269954 11 -   4640569 I
e macEug2.GL124958                26121  0 -     59456 I
e galGal4.chrUn_AADN03023623       2011  0 -      5081 I
e geoFor1.JH740049               182930  0 -   1550430 I
e melGal1.chr7                 34310641  0 -  38723565 I
e anaPla1.KB742696              1254472  0 -   1270250 I
e amaVit1.KB277496                 6803 35 -     10329 I
e apaSpi1.KB929104                22324  0 +    818693 I
e cheMyd1.KB605988               134509  0 +    155857 I
e pelSin1.JH211051                23303  0 +    476004 I
e melUnd1.JH556589              7674127 5368 -   7952740 I
e taeGut2.chr28                 3061651 82 +   4963201 I

a score=51296.000000
s hg38.chr8_KI270814v1_alt       119061 14 +    141812 AGAC---TCCAGATGAG
s panTro4.chr8                 55021547 14 + 143986469 AGAC---CCCAGATGAG
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59162136 14 + 153482349 AGAC---CCCAGCTGAG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                81377044 14 - 104879549 TGAT---TCACCATGGG
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                 61689109 14 + 150158102 AGAC---CCCAGATGAG
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                 58362937 14 + 146850525 AGAC---CCCAGATGAG
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                 53283467 14 + 139301422 AGAC---CCCAGATGAG
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                 33671006 17 + 155834243 AGATCCACCACCACAGG
i calJac3.chr7                 C 0 C 0
s vicPac2.KB632521              1176442 14 -   7152218 ATAT---CCGAGACAAG
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                 5033 14 -     34802 ATAT---CCGAGACAAG
i camFer1.KB018161             C 0 C 0
s cerSim1.JH767738              9901660 14 +  34209287 ACCT---CCGAGACGAG
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146              3116224 14 -   3193751 ACAT---CCGAGACAAA
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990               231085 14 -   2104649 ACGT---CCGAGACCGA
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15          39446423 14 -  55688157 ACAT---CCGAGACAAA
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                13095 14 +   6345240 ACAT---CCGGGACAAA
i triMan1.JH594766             C 0 C 0
s sarHar1.chr5_GL861990_random    13738 14 +     96199 TGAT---CCAGGACAAG
i sarHar1.chr5_GL861990_random C 0 C 0
s anoCar2.chrUn_GL344195          39194 14 +     59083 ACGA---CCCGGACGAG
i anoCar2.chrUn_GL344195       I 2 C 0
s xenTro7.KB021950                75449 14 +    103910 GGGC---GCACTGTGTG
i xenTro7.KB021950             C 0 C 0
e danRer10.chr19               48218196 5198 -  48790377 I
e ornAna1.Contig16971              8823  0 -     13060 I
e tetNig2.chr10                 6379385  0 +  13272281 I
e punNye1.JH419232              4767720 338 +   5065651 T
e mayZeb1.JH720522               609382  0 -   6649201 I
e hapBur1.JH425491               252157  0 -   1273513 I
e neoBri1.JH422308              3491820  0 -   5414369 I
e araMac1.AOUJ01470298              637  0 -       895 I
e takFla1.KE121866               209731  0 +    220559 I
e fr3.chr10                     9064512  0 +   9126174 I
e ficAlb2.chr4A                19371809  0 +  21182716 I
e pseHum1.KB221209             10759694 18 +  11841479 I
e zonAlb1.KB913045             12575724 5731 +  16390125 I
e colLiv1.KB375822              2439586 31 +   2691611 I
e allMis1.JH739658                38113 134 -    691381 I
e falPer1.KB391026              1266701 11 +   1688145 I
e falChe1.KB397934              1269954 11 -   4640569 I
e macEug2.GL124958                26121  0 -     59456 I
e galGal4.chrUn_AADN03023623       2011  0 -      5081 I
e geoFor1.JH740049               182930  0 -   1550430 I
e melGal1.chr7                 34310641  0 -  38723565 I
e anaPla1.KB742696              1254472  0 -   1270250 I
e amaVit1.KB277496                 6803 35 -     10329 I
e apaSpi1.KB929104                22324  0 +    818693 I
e cheMyd1.KB605988               134509  0 +    155857 I
e chrPic2.chrUn_KK088237v1      1206695 40 +  22294289 I
e pelSin1.JH211051                23303  0 +    476004 I
e melUnd1.JH556589              7674127 5368 -   7952740 I
e taeGut2.chr28                 3061651 82 +   4963201 I

a score=147903.000000
s hg38.chr8_KI270814v1_alt       119075 22 +    141812 GATGTCGGGAT----GATACACAAAG
s panTro4.chr8                 55021561 22 + 143986469 GATGTCGGGAT----GATACACAAAG
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59162150 22 + 153482349 GATGTCGGGAT----GATACACAAAG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                81377058 22 - 104879549 GATCTCAGGAA----GATCCACAAAG
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                 61689123 22 + 150158102 GATGTTGGGAT----GATCTACAAAG
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                 58362951 22 + 146850525 GATGTCGGGAT----GATCTACAAAG
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                 53283481 22 + 139301422 GATGTCGGGAT----GATCTACAAAG
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                 33671023 22 + 155834243 GATCTCAGGAA----TATCCACGAAG
i calJac3.chr7                 C 0 C 0
s vicPac2.KB632521              1176456 22 -   7152218 GATCTCAAAAA----GATCCATAAAG
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                 5047 22 -     34802 GATCTCAAAAA----GATCCATAAAG
i camFer1.KB018161             C 0 C 0
s cerSim1.JH767738              9901674 22 +  34209287 GATCTCGGAAA----GATCCACAAAG
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146              3116238 22 -   3193751 GATCTTGGAAA----GATCCACAAAG
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990               231099 22 -   2104649 GACCTGGGGAA----GATCCACAGAG
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15          39446437 22 -  55688157 GATCTCGGAAA----GATCCACAAAG
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                13109 22 +   6345240 GATCTCGGGAA----GATCCACAAAG
i triMan1.JH594766             C 0 C 0
s sarHar1.chr5_GL861990_random    13752 22 +     96199 GATCTCGGGAA----GCTCCACAAAG
i sarHar1.chr5_GL861990_random C 0 C 0
s taeGut2.chr28                 3061733 22 +   4963201 GCTGTTGGGAT----GTTTCAGAGCA
i taeGut2.chr28                I 82 I 2
s anoCar2.chrUn_GL344195          39208 21 +     59083 -----AGGGACAAGAGTGACAGGTGA
i anoCar2.chrUn_GL344195       C 0 I 2
s xenTro7.KB021950                75463 17 +    103910 ---CTTGGGGC----GCTGTGGTT--
i xenTro7.KB021950             C 0 C 0
e danRer10.chr19               48218196 5198 -  48790377 I
e ornAna1.Contig16971              8823  0 -     13060 I
e tetNig2.chr10                 6379385  0 +  13272281 I
e punNye1.JH419232              4767720 338 +   5065651 T
e mayZeb1.JH720522               609382  0 -   6649201 I
e hapBur1.JH425491               252157  0 -   1273513 I
e neoBri1.JH422308              3491820  0 -   5414369 I
e araMac1.AOUJ01470298              637  0 -       895 I
e takFla1.KE121866               209731  0 +    220559 I
e fr3.chr10                     9064512  0 +   9126174 I
e ficAlb2.chr4A                19371809  0 +  21182716 I
e pseHum1.KB221209             10759694 18 +  11841479 I
e zonAlb1.KB913045             12575724 5731 +  16390125 I
e colLiv1.KB375822              2439586 31 +   2691611 I
e allMis1.JH739658                38113 134 -    691381 I
e falPer1.KB391026              1266701 11 +   1688145 I
e falChe1.KB397934              1269954 11 -   4640569 I
e macEug2.GL124958                26121  0 -     59456 I
e galGal4.chrUn_AADN03023623       2011  0 -      5081 I
e geoFor1.JH740049               182930  0 -   1550430 I
e melGal1.chr7                 34310641  0 -  38723565 I
e anaPla1.KB742696              1254472  0 -   1270250 I
e amaVit1.KB277496                 6803 35 -     10329 I
e apaSpi1.KB929104                22324  0 +    818693 I
e cheMyd1.KB605988               134509  0 +    155857 I
e chrPic2.chrUn_KK088237v1      1206695 40 +  22294289 I
e pelSin1.JH211051                23303  0 +    476004 I
e melUnd1.JH556589              7674127 5368 -   7952740 I

a score=-15914.000000
s hg38.chr8_KI270814v1_alt       119097 21 +    141812 CTGCGT-CCAGGGGAACG--------------CGTG
s panTro4.chr8                 55021583 21 + 143986469 CTGCGT-CCAGGGGAACG--------------CGTG
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59162172 21 + 153482349 CTGCGT-CCAGGGCAACG--------------CGTG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                81377080 22 - 104879549 CTGCCTCCCGGGGCCAAG--------------CCTG
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                 61689145 21 + 150158102 CTGCGT-CCAGGGAAACG--------------CGTG
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                 58362973 21 + 146850525 CTGCGT-CCAGGGAAACG--------------CGTG
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                 53283503 21 + 139301422 CTGCGT-CCAGGGAAACA--------------CGTG
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                 33671045 22 + 155834243 CTGCCTGGCAGGGCCAAG--------------ACCG
i calJac3.chr7                 C 0 C 0
s vicPac2.KB632521              1176478 22 -   7152218 CTGCCAGCGTAGGCGACG--------------TGGC
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                 5069 22 -     34802 CTGCCAGCGTAGGCGACG--------------TGGC
i camFer1.KB018161             C 0 C 0
s cerSim1.JH767738              9901696 22 +  34209287 CTGCCAGCGTGGGCAACG--------------TAGC
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146              3116260 22 -   3193751 CTGCCAGCGTGGGCAACG--------------TCCG
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990               231121 22 -   2104649 CGGCCAGCGTGGGCAGCG--------------TCGC
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15          39446459 22 -  55688157 CTGCCAGCGTGGGTAACG--------------TAGC
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                13131 22 +   6345240 CTGCCAGCGTGGGTAACG--------------TAGC
i triMan1.JH594766             C 0 C 0
s sarHar1.chr5_GL861990_random    13774 22 +     96199 CTGCCTCGATCGGAGATG--------------TGGC
i sarHar1.chr5_GL861990_random C 0 C 0
s taeGut2.chr28                 3061757  8 +   4963201 ----------AGGTGCTG------------------
i taeGut2.chr28                I 2 C 0
s chrPic2.chrUn_KK088237v1      1206735  3 +  22294289 ---------------CTG------------------
i chrPic2.chrUn_KK088237v1     I 40 C 0
s anoCar2.chrUn_GL344195          39231 24 +     59083 --------CTGGGAGCAGCGAGGAAAAGGGTG----
i anoCar2.chrUn_GL344195       I 2 I 4204
s xenTro7.KB021950                75480 18 +    103910 CTGTGC-CGGGGGCGCTG--------------T---
i xenTro7.KB021950             C 0 C 0
e danRer10.chr19               48218196 5198 -  48790377 I
e ornAna1.Contig16971              8823  0 -     13060 I
e tetNig2.chr10                 6379385  0 +  13272281 I
e punNye1.JH419232              4767720 338 +   5065651 T
e mayZeb1.JH720522               609382  0 -   6649201 I
e hapBur1.JH425491               252157  0 -   1273513 I
e neoBri1.JH422308              3491820  0 -   5414369 I
e araMac1.AOUJ01470298              637  0 -       895 I
e takFla1.KE121866               209731  0 +    220559 I
e fr3.chr10                     9064512  0 +   9126174 I
e ficAlb2.chr4A                19371809  0 +  21182716 I
e pseHum1.KB221209             10759694 18 +  11841479 I
e zonAlb1.KB913045             12575724 5731 +  16390125 I
e colLiv1.KB375822              2439586 31 +   2691611 I
e allMis1.JH739658                38113 134 -    691381 I
e falPer1.KB391026              1266701 11 +   1688145 I
e falChe1.KB397934              1269954 11 -   4640569 I
e macEug2.GL124958                26121  0 -     59456 I
e galGal4.chrUn_AADN03023623       2011  0 -      5081 I
e geoFor1.JH740049               182930  0 -   1550430 I
e melGal1.chr7                 34310641  0 -  38723565 I
e anaPla1.KB742696              1254472  0 -   1270250 I
e amaVit1.KB277496                 6803 35 -     10329 I
e apaSpi1.KB929104                22324  0 +    818693 I
e cheMyd1.KB605988               134509  0 +    155857 I
e pelSin1.JH211051                23303  0 +    476004 I
e melUnd1.JH556589              7674127 5368 -   7952740 I

a score=71896.000000
s hg38.chr8_KI270814v1_alt       119118 10 +    141812 GGAGCTGCAG
s panTro4.chr8                 55021604 10 + 143986469 GGAGCTGCAG
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59162193 10 + 153482349 GGAGCTGCAG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                81377102 10 - 104879549 GAAGCTGGAG
i nomLeu3.chr18                C 0 I 45
s rheMac3.chr8                 61689166 10 + 150158102 GAAGCTGCAG
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                 58362994 10 + 146850525 GAAGCTGCAG
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                 53283524 10 + 139301422 GAAGCTGCAG
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                 33671067 10 + 155834243 GAAGCTGCAG
i calJac3.chr7                 C 0 C 0
s vicPac2.KB632521              1176500 10 -   7152218 CAGAGTGCAG
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                 5091 10 -     34802 CAGAGTGCAG
i camFer1.KB018161             C 0 C 0
s cerSim1.JH767738              9901718 10 +  34209287 GAAAGTGCAG
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146              3116282 10 -   3193751 AAAAGTGCAG
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990               231143 10 -   2104649 CAAAGTGAAG
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15          39446481 10 -  55688157 GAAGGTGCAG
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                13153 10 +   6345240 GAAGGTGCAG
i triMan1.JH594766             C 0 C 0
s sarHar1.chr5_GL861990_random    13796 10 +     96199 GAAAATGCAG
i sarHar1.chr5_GL861990_random C 0 C 0
s taeGut2.chr28                 3061765 10 +   4963201 AGAGCAGCAG
i taeGut2.chr28                C 0 I 1
s chrPic2.chrUn_KK088237v1      1206738 10 +  22294289 GCACCAGGAG
i chrPic2.chrUn_KK088237v1     C 0 I 1
s xenTro7.KB021950                75498 10 +    103910 GGGTCTGTAC
i xenTro7.KB021950             C 0 C 0
e danRer10.chr19               48218196 5198 -  48790377 I
e ornAna1.Contig16971              8823  0 -     13060 I
e tetNig2.chr10                 6379385  0 +  13272281 I
e punNye1.JH419232              4767720 338 +   5065651 T
e mayZeb1.JH720522               609382  0 -   6649201 I
e hapBur1.JH425491               252157  0 -   1273513 I
e neoBri1.JH422308              3491820  0 -   5414369 I
e araMac1.AOUJ01470298              637  0 -       895 I
e takFla1.KE121866               209731  0 +    220559 I
e fr3.chr10                     9064512  0 +   9126174 I
e ficAlb2.chr4A                19371809  0 +  21182716 I
e anoCar2.chrUn_GL344195          39255 4204 +     59083 I
e pseHum1.KB221209             10759694 18 +  11841479 I
e zonAlb1.KB913045             12575724 5731 +  16390125 I
e colLiv1.KB375822              2439586 31 +   2691611 I
e allMis1.JH739658                38113 134 -    691381 I
e falPer1.KB391026              1266701 11 +   1688145 I
e falChe1.KB397934              1269954 11 -   4640569 I
e macEug2.GL124958                26121  0 -     59456 I
e galGal4.chrUn_AADN03023623       2011  0 -      5081 I
e geoFor1.JH740049               182930  0 -   1550430 I
e melGal1.chr7                 34310641  0 -  38723565 I
e anaPla1.KB742696              1254472  0 -   1270250 I
e amaVit1.KB277496                 6803 35 -     10329 I
e apaSpi1.KB929104                22324  0 +    818693 I
e cheMyd1.KB605988               134509  0 +    155857 I
e pelSin1.JH211051                23303  0 +    476004 I
e melUnd1.JH556589              7674127 5368 -   7952740 I

a score=36463.000000
s hg38.chr8_KI270814v1_alt       119128 42 +    141812 CTGAGGCTCC-CGCTGAAG------AGAAAA--GACCAGTCTGAAATCTAC
s panTro4.chr8                 55021614 42 + 143986469 CGGAGGCTCC-CGCTGAAG------AGAAAA--GACCAGTCTGAAATCTAC
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59162203 42 + 153482349 CCGAGGCTCC-CGCTCAAG------AGAAAA--GACCAGTCTGAAACCTAC
i ponAbe2.chr8                 C 0 C 0
s rheMac3.chr8                 61689176 42 + 150158102 CGGAGCTTCC-TGCTCAAG------AGAAAA--GACCAGTCTGAAACCTGC
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                 58363004 42 + 146850525 CGGAGCTTCC-TGCTCAAG------AGAAAA--GACCAGTCTGAAACCTGC
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                 53283534 42 + 139301422 CGGAGCCTCC-TGCTCAAG------AGAAAA--GACCAGTCTGAAACCTTC
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                 33671077 38 + 155834243 ---AAGATGA-TGAAGAAG------AGGAAGACAATGGACCTGAACAC---
i calJac3.chr7                 C 0 I 10
s vicPac2.KB632521              1176510 42 -   7152218 CAGATTCTGC-TGCTCAGG------AAAAAT--GGCTTGAACGACAGAGAC
i vicPac2.KB632521             C 0 I 3
s camFer1.KB018161                 5101 42 -     34802 CAGATTCTGC-TGCTCAGG------AAAAAT--GGCTTGAACGACAGAGAC
i camFer1.KB018161             C 0 I 3
s cerSim1.JH767738              9901728 42 +  34209287 CAGATTCTGT-TGCTTGGG------AAAAGT--GGCTTGAATGATAGAGAC
i cerSim1.JH767738             C 0 I 3
s pteAle1.KB031146              3116292 42 -   3193751 CGGATTCTAT-TGCTCCGT------TTAAAT--GGCCTGAATGATAGAGAC
i pteAle1.KB031146             C 0 I 3
s myoLuc2.GL429990               231153 42 -   2104649 CAGATTCTGT-TGCTCCGG------ATAAAT--GGCTTGAATGATAGAGAC
i myoLuc2.GL429990             C 0 I 3
s loxAfr3.scaffold_15          39446491 42 -  55688157 CAGATTCTTT-TGCTCGGG------AAAAAT--GGCTTGAATGATAGAGAT
i loxAfr3.scaffold_15          C 0 I 3
s triMan1.JH594766                13163 42 +   6345240 CAGATTCTTT-TGCTCGGG------AAAAAT--GGCTTGAATGATAGAGAC
i triMan1.JH594766             C 0 I 3
s sarHar1.chr5_GL861990_random    13806 42 +     96199 CAGTTGCTGC-TGCTCGGA------AAGAAC--AATGTGAATGATCTGGAT
i sarHar1.chr5_GL861990_random C 0 I 13
s taeGut2.chr28                 3061776 47 +   4963201 TCGGCTCTGT-GGCAGTGGTTCCTCATGCTG--GGTTGGCATGACATCCC-
i taeGut2.chr28                I 1 C 0
s chrPic2.chrUn_KK088237v1      1206749 44 +  22294289 GGGGCTCC-----CCCTGGAGCTCCAGGGAG--GGCAGCTTGGGGGTCCCC
i chrPic2.chrUn_KK088237v1     I 1 C 0
s xenTro7.KB021950                75508 14 +    103910 CGGGGGCTGTGTGC-------------------------------------
i xenTro7.KB021950             C 0 C 0
e danRer10.chr19               48218196 5198 -  48790377 I
e ornAna1.Contig16971              8823  0 -     13060 I
e tetNig2.chr10                 6379385  0 +  13272281 I
e punNye1.JH419232              4767720 338 +   5065651 T
e mayZeb1.JH720522               609382  0 -   6649201 I
e hapBur1.JH425491               252157  0 -   1273513 I
e neoBri1.JH422308              3491820  0 -   5414369 I
e araMac1.AOUJ01470298              637  0 -       895 I
e takFla1.KE121866               209731  0 +    220559 I
e fr3.chr10                     9064512  0 +   9126174 I
e ficAlb2.chr4A                19371809  0 +  21182716 I
e anoCar2.chrUn_GL344195          39255 4204 +     59083 I
e pseHum1.KB221209             10759694 18 +  11841479 I
e zonAlb1.KB913045             12575724 5731 +  16390125 I
e colLiv1.KB375822              2439586 31 +   2691611 I
e allMis1.JH739658                38113 134 -    691381 I
e falPer1.KB391026              1266701 11 +   1688145 I
e falChe1.KB397934              1269954 11 -   4640569 I
e macEug2.GL124958                26121  0 -     59456 I
e galGal4.chrUn_AADN03023623       2011  0 -      5081 I
e geoFor1.JH740049               182930  0 -   1550430 I
e melGal1.chr7                 34310641  0 -  38723565 I
e anaPla1.KB742696              1254472  0 -   1270250 I
e amaVit1.KB277496                 6803 35 -     10329 I
e apaSpi1.KB929104                22324  0 +    818693 I
e cheMyd1.KB605988               134509  0 +    155857 I
e pelSin1.JH211051                23303  0 +    476004 I
e melUnd1.JH556589              7674127 5368 -   7952740 I
e nomLeu3.chr18                81377112 45 - 104879549 I

a score=40298.000000
s hg38.chr8_KI270814v1_alt       119170 18 +    141812 AAGAACAGGT--GTCGGGAA--------------
s panTro4.chr8                 55021656 18 + 143986469 AAGAACAGGT--GTCGGGAA--------------
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59162245 18 + 153482349 AAGAACAGGT--GTTGGGAA--------------
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                81377157 20 - 104879549 AAGAAGAGGTAAACCAGGCC--------------
i nomLeu3.chr18                I 45 C 0
s rheMac3.chr8                 61689218 18 + 150158102 AAGAACAGAT--GTCAGGAA--------------
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                 58363046 18 + 146850525 AAGAACAGAT--GTCAGGAA--------------
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                 53283576 18 + 139301422 AAGAACAGGT--GTCAGGAA--------------
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                 33671125 18 + 155834243 AACAATAGGT--ACCAGGCC--------------
i calJac3.chr7                 I 10 C 0
s vicPac2.KB632521              1176555 18 -   7152218 ATGAACAGGT--AACTGAGG--------------
i vicPac2.KB632521             I 3 C 0
s camFer1.KB018161                 5146 18 -     34802 ATGAACAGGT--AACTGAGG--------------
i camFer1.KB018161             I 3 C 0
s cerSim1.JH767738              9901773 18 +  34209287 TTGAACAGGT--AATAGGGA--------------
i cerSim1.JH767738             I 3 C 0
s pteAle1.KB031146              3116337 18 -   3193751 ATGAACAGGT--AATAGGAC--------------
i pteAle1.KB031146             I 3 I 6
s myoLuc2.GL429990               231198 18 -   2104649 ATGAACAGGT--AATAAGGC--------------
i myoLuc2.GL429990             I 3 C 0
s loxAfr3.scaffold_15          39446536 18 -  55688157 ACGAACAGGT--AATAGGGA--------------
i loxAfr3.scaffold_15          I 3 C 0
s triMan1.JH594766                13208 15 +   6345240 ACGAACAGG-----TAGGGA--------------
i triMan1.JH594766             I 3 C 0
s sarHar1.chr5_GL861990_random    13861 18 +     96199 AAGAACAGGG--ATTGGGGA--------------
i sarHar1.chr5_GL861990_random I 13 N 0
s taeGut2.chr28                 3061823 14 +   4963201 ----ATCTCT--GCCCAGCA--------------
i taeGut2.chr28                C 0 C 0
s chrPic2.chrUn_KK088237v1      1206793 15 +  22294289 ---AGCCCCT--GCTTGGGG--------------
i chrPic2.chrUn_KK088237v1     C 0 C 0
s xenTro7.KB021950                75522 21 +    103910 -------------TTGGGGCGCTGTGGGTCTGTA
i xenTro7.KB021950             C 0 C 0
e danRer10.chr19               48218196 5198 -  48790377 I
e ornAna1.Contig16971              8823  0 -     13060 I
e tetNig2.chr10                 6379385  0 +  13272281 I
e punNye1.JH419232              4767720 338 +   5065651 T
e mayZeb1.JH720522               609382  0 -   6649201 I
e hapBur1.JH425491               252157  0 -   1273513 I
e neoBri1.JH422308              3491820  0 -   5414369 I
e araMac1.AOUJ01470298              637  0 -       895 I
e takFla1.KE121866               209731  0 +    220559 I
e fr3.chr10                     9064512  0 +   9126174 I
e ficAlb2.chr4A                19371809  0 +  21182716 I
e anoCar2.chrUn_GL344195          39255 4204 +     59083 I
e pseHum1.KB221209             10759694 18 +  11841479 I
e zonAlb1.KB913045             12575724 5731 +  16390125 I
e colLiv1.KB375822              2439586 31 +   2691611 I
e allMis1.JH739658                38113 134 -    691381 I
e falPer1.KB391026              1266701 11 +   1688145 I
e falChe1.KB397934              1269954 11 -   4640569 I
e macEug2.GL124958                26121  0 -     59456 I
e galGal4.chrUn_AADN03023623       2011  0 -      5081 I
e geoFor1.JH740049               182930  0 -   1550430 I
e melGal1.chr7                 34310641  0 -  38723565 I
e anaPla1.KB742696              1254472  0 -   1270250 I
e amaVit1.KB277496                 6803 35 -     10329 I
e apaSpi1.KB929104                22324  0 +    818693 I
e cheMyd1.KB605988               134509  0 +    155857 I
e pelSin1.JH211051                23303  0 +    476004 I
e melUnd1.JH556589              7674127 5368 -   7952740 I

a score=-68985.000000
s hg38.chr8_KI270814v1_alt     119188 21 +    141812 CTGCG-----GGC---TGCAGGCTTGG--------GG-
s panTro4.chr8               55021674 20 + 143986469 CTGCG-----GGC---TGCGGGC-TGG--------GG-
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8               59162263 20 + 153482349 CTGCG-----GGC---TGCGGGC-TGG--------GG-
i ponAbe2.chr8               C 0 C 0
s nomLeu3.chr18              81377177 14 - 104879549 CT---------GC---CTCAGCC---G--------GG-
i nomLeu3.chr18              C 0 C 0
s rheMac3.chr8               61689236 13 + 150158102 ------------C---TGCGGGC-TGG--------GG-
i rheMac3.chr8               C 0 C 0
s macFas5.chr8               58363064 13 + 146850525 ------------C---TGCGGGC-TGG--------GG-
i macFas5.chr8               C 0 C 0
s chlSab2.chr8               53283594 20 + 139301422 ctgcg-----gcc---tgcgggc-tgg--------gg-
i chlSab2.chr8               C 0 C 0
s calJac3.chr7               33671143 14 + 155834243 CTGC--------C---TGAGCCC------------GG-
i calJac3.chr7               C 0 C 0
s vicPac2.KB632521            1176573 12 -   7152218 ----------------TGGCGGG-CTG--------GG-
i vicPac2.KB632521           C 0 C 0
s camFer1.KB018161               5164 12 -     34802 ----------------TGGCGGG-CTG--------GG-
i camFer1.KB018161           C 0 C 0
s cerSim1.JH767738            9901791 19 +  34209287 ------------C---TGGGAGA-CGG-TGGCCG-GG-
i cerSim1.JH767738           C 0 C 0
s pteAle1.KB031146            3116361 28 -   3193751 ATAGG-----GAC---TGTGAGG-CCAGTGGCCCTGG-
i pteAle1.KB031146           I 6 C 0
s myoLuc2.GL429990             231216 17 -   2104649 ------------C---TGCGCGG-CTC----CCGCGG-
i myoLuc2.GL429990           C 0 C 0
s loxAfr3.scaffold_15        39446554 24 -  55688157 CTGCGTGGCAGGC---TG-GCGA-TGG--------GG-
i loxAfr3.scaffold_15        C 0 C 0
s triMan1.JH594766              13223 24 +   6345240 CTGCGTGGCAGGC---TG-GCGA-TGG--------GG-
i triMan1.JH594766           C 0 C 0
s taeGut2.chr28               3061837 17 +   4963201 ----------GCCAGGTG-GGGC-TGG--------GG-
i taeGut2.chr28              C 0 I 16
s chrPic2.chrUn_KK088237v1    1206808 14 +  22294289 ----------CTC---TA-GGGC-TCA--------GG-
i chrPic2.chrUn_KK088237v1   C 0 n 0
s xenTro7.KB021950              75543 21 +    103910 -----CCGGGGGC---TGTGTGC-TTG--------GGG
i xenTro7.KB021950           C 0 I 1
e danRer10.chr19             48218196 5198 -  48790377 I
e ornAna1.Contig16971            8823  0 -     13060 I
e tetNig2.chr10               6379385  0 +  13272281 I
e punNye1.JH419232            4767720 338 +   5065651 T
e mayZeb1.JH720522             609382  0 -   6649201 I
e hapBur1.JH425491             252157  0 -   1273513 I
e neoBri1.JH422308            3491820  0 -   5414369 I
e araMac1.AOUJ01470298            637  0 -       895 I
e takFla1.KE121866             209731  0 +    220559 I
e fr3.chr10                   9064512  0 +   9126174 I
e ficAlb2.chr4A              19371809  0 +  21182716 I
e anoCar2.chrUn_GL344195        39255 4204 +     59083 I
e pseHum1.KB221209           10759694 18 +  11841479 I
e zonAlb1.KB913045           12575724 5731 +  16390125 I
e colLiv1.KB375822            2439586 31 +   2691611 I
e allMis1.JH739658              38113 134 -    691381 I
e falPer1.KB391026            1266701 11 +   1688145 I
e falChe1.KB397934            1269954 11 -   4640569 I
e macEug2.GL124958              26121  0 -     59456 I
e galGal4.chrUn_AADN03023623     2011  0 -      5081 I
e geoFor1.JH740049             182930  0 -   1550430 I
e melGal1.chr7               34310641  0 -  38723565 I
e anaPla1.KB742696            1254472  0 -   1270250 I
e amaVit1.KB277496               6803 35 -     10329 I
e apaSpi1.KB929104              22324  0 +    818693 I
e cheMyd1.KB605988             134509  0 +    155857 I
e pelSin1.JH211051              23303  0 +    476004 I
e melUnd1.JH556589            7674127 5368 -   7952740 I

a score=-12430.000000
s hg38.chr8_KI270814v1_alt     119209 18 +    141812 -------------GTTGA--GGGAGGAGGTGGG
s panTro4.chr8               55021694 18 + 143986469 -------------GTTGA--GGAAGGAGGTGGG
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8               59162283 18 + 153482349 -------------GTTGA--GGGAGGAGGTGGG
i ponAbe2.chr8               C 0 C 0
s nomLeu3.chr18              81377191 17 - 104879549 -------------GCTGC--AGGAGGAGG-AGG
i nomLeu3.chr18              C 0 C 0
s rheMac3.chr8               61689249 18 + 150158102 -------------ACTGA--GGGAGGAGGCGGG
i rheMac3.chr8               C 0 C 0
s macFas5.chr8               58363077 18 + 146850525 -------------ACTGA--GGGAGGAGGCGGG
i macFas5.chr8               C 0 C 0
s chlSab2.chr8               53283614 18 + 139301422 -------------actga--gggaggaggccgg
i chlSab2.chr8               C 0 C 0
s calJac3.chr7               33671157 17 + 155834243 -------------GCTGC--AGGAGGAGGT-GG
i calJac3.chr7               C 0 C 0
s vicPac2.KB632521            1176585 12 -   7152218 -------------GCCGGCCGGGAG--------
i vicPac2.KB632521           C 0 C 0
s camFer1.KB018161               5176 12 -     34802 -------------GCCGGCCGGGTG--------
i camFer1.KB018161           C 0 C 0
s cerSim1.JH767738            9901810 20 +  34209287 -------------GCCGGCCTGGAGGAGGCGGG
i cerSim1.JH767738           C 0 C 0
s pteAle1.KB031146            3116389 20 -   3193751 -------------GCGGGCCTGGGGTCGGGGTG
i pteAle1.KB031146           C 0 C 0
s myoLuc2.GL429990             231233 12 -   2104649 -------------GCGGCCCTGGGG--------
i myoLuc2.GL429990           C 0 C 0
s loxAfr3.scaffold_15        39446578 18 -  55688157 -------------CCAGC--GGGAGGACGCAGG
i loxAfr3.scaffold_15        C 0 I 274
s triMan1.JH594766              13247 18 +   6345240 -------------CCGGC--GGGAGGAGGCAGG
i triMan1.JH594766           C 0 I 151
s taeGut2.chr28               3061870 14 +   4963201 -------------AGTGT--TAAATTATG----
i taeGut2.chr28              I 16 C 0
s xenTro7.KB021950              75565 22 +    103910 GCTGTGGTTCTGTGCCGG--GGGC---------
i xenTro7.KB021950           I 1 C 0
e danRer10.chr19             48218196 5198 -  48790377 I
e ornAna1.Contig16971            8823  0 -     13060 I
e tetNig2.chr10               6379385  0 +  13272281 I
e punNye1.JH419232            4767720 338 +   5065651 T
e mayZeb1.JH720522             609382  0 -   6649201 I
e hapBur1.JH425491             252157  0 -   1273513 I
e neoBri1.JH422308            3491820  0 -   5414369 I
e araMac1.AOUJ01470298            637  0 -       895 I
e takFla1.KE121866             209731  0 +    220559 I
e fr3.chr10                   9064512  0 +   9126174 I
e ficAlb2.chr4A              19371809  0 +  21182716 I
e anoCar2.chrUn_GL344195        39255 4204 +     59083 I
e pseHum1.KB221209           10759694 18 +  11841479 I
e zonAlb1.KB913045           12575724 5731 +  16390125 I
e colLiv1.KB375822            2439586 31 +   2691611 I
e allMis1.JH739658              38113 134 -    691381 I
e falPer1.KB391026            1266701 11 +   1688145 I
e falChe1.KB397934            1269954 11 -   4640569 I
e macEug2.GL124958              26121  0 -     59456 I
e galGal4.chrUn_AADN03023623     2011  0 -      5081 I
e geoFor1.JH740049             182930  0 -   1550430 I
e melGal1.chr7               34310641  0 -  38723565 I
e anaPla1.KB742696            1254472  0 -   1270250 I
e amaVit1.KB277496               6803 35 -     10329 I
e apaSpi1.KB929104              22324  0 +    818693 I
e cheMyd1.KB605988             134509  0 +    155857 I
e chrPic2.chrUn_KK088237v1    1206822  0 +  22294289 I
e pelSin1.JH211051              23303  0 +    476004 I
e melUnd1.JH556589            7674127 5368 -   7952740 I

a score=-36879.000000
s hg38.chr8_KI270814v1_alt     119227 86 +    141812 CAGGTG---GGGAGAAGCACCTCCTTCAGAATTGGGGGCTTGGGGAGTGGG----GGCCAGGGGAGGCGTGGAAAGAATAGTGTGT-GCGGGGT
s panTro4.chr8               55021712 86 + 143986469 CAGGTG---GGGAGAAGCACCTCCTTCAGAGTTGGGGGCTTGGGGAGTGGG----GGCCAGGGGAGGCGTGGAAAGAATAGTGTGT-GCGGGGT
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8               59162301 86 + 153482349 CAGGTC---GGGAGAAGCACCTCCTTCAGAGTTGGGGGCTTGGGGAGTGGG----GGCCAGGGGAAGCGTGGAAAGAATAGTGTGT-GCGGGGT
i ponAbe2.chr8               C 0 C 0
s nomLeu3.chr18              81377208 86 - 104879549 CGGCTGT--GGGAGGATCGCC-CCTTCAGAG-TAGGggctggggggtctgg----ggaggatgggagcgggtggagagtggcgggcagcggggt
i nomLeu3.chr18              C 0 C 0
s rheMac3.chr8               61689267 86 + 150158102 CGGGTG---GGGAGAAGCACCTCCTTCAGAGTTGGGGGCTTGAAGATTGGG----GGCCAGGGGAGGCGTGGAAAGGATGGGGTGT-GCGGGGC
i rheMac3.chr8               C 0 C 0
s macFas5.chr8               58363095 86 + 146850525 CGGGTG---GGGAGAAGCACCTCCTTCAGAGTTGGGGGCTTGAAGATTGGG----GGCCAGGGGAGGCGTGGAAAGGATGGGGTGT-GCGGGGC
i macFas5.chr8               C 0 C 0
s chlSab2.chr8               53283632 86 + 139301422 cggGTG---GGGAGAAGCACCTCCTTCAGAGTTGGGGGCTTGAAGATTGGG----GGCCAGGGGAGGCGTGGAAAGAATGGGGTGT-GCGGGGT
i chlSab2.chr8               C 0 C 0
s calJac3.chr7               33671174 80 + 155834243 CGGCTGT--GGGAGGATCGCC-CCTTCAGAGTGCTGGGCTGGGGGACCTGG----GGACGAGGGGAGCAGCTGGAGGA------GT-GGGGGAC
i calJac3.chr7               C 0 C 0
s vicPac2.KB632521            1176597 19 -   7152218 ---------GGGAGGCGC-------CC-------GGGGC----------------GGC------------------------------------
i vicPac2.KB632521           C 0 C 0
s camFer1.KB018161               5188 19 -     34802 ---------GGGAGGAGC-------CC-------GGGGC----------------AGC------------------------------------
i camFer1.KB018161           C 0 C 0
s cerSim1.JH767738            9901830 50 +  34209287 CGGACCTGGGAGAAGCGCGCCCTTCCC------GGGCGC----------------AGCCTGCGGGA------------------GC-CCAG---
i cerSim1.JH767738           C 0 C 0
s pteAle1.KB031146            3116409 51 -   3193751 CAGACCTGAGAGAAGAGCTCACCTGCCA-----GGGCAC----------------AGCTAGGTGGA------------------GC-CCAG---
i pteAle1.KB031146           C 0 C 0
s myoLuc2.GL429990             231245 36 -   2104649 -----------GGAGCGCACCCCGGCC-------GGCTC----------------CGC-AGGTGG-------------------GC-GCAG---
i myoLuc2.GL429990           C 0 C 0
s taeGut2.chr28               3061884 78 +   4963201 --------CAGGACCCTCAGCTGCTTCCAGCATGCGTCCTCTCAGGGCAGGGCCAGGCCAGGAGCTGTCTGGCAGAA-------GT-CCATGAC
i taeGut2.chr28              C 0 I 2
s xenTro7.KB021950              75587 72 +    103910 --GCTGT--GGG-------------TCTGTACCGGGGGCTGTGTTCTTGGG----GTGCTGTGGGTCTGTACCGGGGGCTGTGTGC-TTGGGGC
i xenTro7.KB021950           C 0 C 0
e danRer10.chr19             48218196 5198 -  48790377 I
e ornAna1.Contig16971            8823  0 -     13060 I
e tetNig2.chr10               6379385  0 +  13272281 I
e punNye1.JH419232            4767720 338 +   5065651 T
e mayZeb1.JH720522             609382  0 -   6649201 I
e hapBur1.JH425491             252157  0 -   1273513 I
e neoBri1.JH422308            3491820  0 -   5414369 I
e araMac1.AOUJ01470298            637  0 -       895 I
e takFla1.KE121866             209731  0 +    220559 I
e fr3.chr10                   9064512  0 +   9126174 I
e ficAlb2.chr4A              19371809  0 +  21182716 I
e anoCar2.chrUn_GL344195        39255 4204 +     59083 I
e pseHum1.KB221209           10759694 18 +  11841479 I
e zonAlb1.KB913045           12575724 5731 +  16390125 I
e colLiv1.KB375822            2439586 31 +   2691611 I
e allMis1.JH739658              38113 134 -    691381 I
e falPer1.KB391026            1266701 11 +   1688145 I
e falChe1.KB397934            1269954 11 -   4640569 I
e macEug2.GL124958              26121  0 -     59456 I
e galGal4.chrUn_AADN03023623     2011  0 -      5081 I
e geoFor1.JH740049             182930  0 -   1550430 I
e melGal1.chr7               34310641  0 -  38723565 I
e anaPla1.KB742696            1254472  0 -   1270250 I
e amaVit1.KB277496               6803 35 -     10329 I
e apaSpi1.KB929104              22324  0 +    818693 I
e cheMyd1.KB605988             134509  0 +    155857 I
e chrPic2.chrUn_KK088237v1    1206822  0 +  22294289 I
e pelSin1.JH211051              23303  0 +    476004 I
e melUnd1.JH556589            7674127 5368 -   7952740 I
e triMan1.JH594766              13265 151 +   6345240 I
e loxAfr3.scaffold_15        39446596 274 -  55688157 I

a score=-4624.000000
s hg38.chr8_KI270814v1_alt     119313 37 +    141812 GGGCCGTCCTCGT------------------------------CCCCAGGGCGCT--GG-----CTTTC-TTCCT
s panTro4.chr8               55021798 38 + 143986469 GGGCCGTCCTCGT------------------------------CCCCAGGGCGCTG-GG-----CTTTC-TTCCT
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8               59162387 38 + 153482349 GGGCCGTACTCGT------------------------------CCCCAGGGCGCTG-GG-----CTTTC-TTCCT
i ponAbe2.chr8               C 0 C 0
s nomLeu3.chr18              81377294 36 - 104879549 -ggcTGTCCTGGG------------------------------TCCCGGGGT-CTA-GG-----CCTTC-TTCCC
i nomLeu3.chr18              C 0 C 0
s rheMac3.chr8               61689353 38 + 150158102 GGGCGGTCCTAGT------------------------------CCCCAGGGCTCTT-GG-----CTTTC-TTCCC
i rheMac3.chr8               C 0 C 0
s macFas5.chr8               58363181 38 + 146850525 GGGCGGTCCTAGT------------------------------CCCCAGGGCTCTG-GG-----CTTTC-TTCCC
i macFas5.chr8               C 0 C 0
s chlSab2.chr8               53283718 38 + 139301422 GGGCGGTCCTTGT------------------------------CCCCAGGGCTCTG-GA-----CTTTC-TTCCC
i chlSab2.chr8               C 0 C 0
s calJac3.chr7               33671254 37 + 155834243 -AGCGGTCCTGGG------------------------------CCCTGGGGT-CTG-GG-----CCTTCGTTCCG
i calJac3.chr7               C 0 C 0
s vicPac2.KB632521            1176616 23 -   7152218 ---CACACCTGTC------------------------------A-------------GG-----TTCTC-CTCGG
i vicPac2.KB632521           C 0 C 0
s camFer1.KB018161               5207 23 -     34802 ---CCCACCTGTC------------------------------A-------------GG-----TTTTC-CTCGG
i camFer1.KB018161           C 0 C 0
s cerSim1.JH767738            9901880 37 +  34209287 ----CCTCCTGTC------------------------------ACCGAGGGCGCTC-GG--ATCTTTCC-TCCCG
i cerSim1.JH767738           C 0 C 0
s pteAle1.KB031146            3116460 40 -   3193751 ---CCCTCCCGTC------------------------------ACAGTGGGCGCTG-GGCTGTCTCCCC-TCCTG
i pteAle1.KB031146           C 0 C 0
s myoLuc2.GL429990             231281 39 -   2104649 ---CCCTGCTGTC------------------------------ACC-TAGGTGCTG-GGCCGTCTTCCC-TCCCG
i myoLuc2.GL429990           C 0 C 0
s triMan1.JH594766              13416 63 +   6345240 gggcagttctccttggctttatggttgctgagtcggaattctactctaaggcagtg-gg-----ttttt------
i triMan1.JH594766           I 151 C 0
s taeGut2.chr28               3061964 37 +   4963201 AGTTGCTCCTGGG------------------------------TTACTGGGAGCTG-GC-----CATGC-CCCC-
i taeGut2.chr28              I 2 I 2
s xenTro7.KB021950              75659 37 +    103910 GCTGTGTGTCTGT------------------------------GCCTGGGGCGCTGTGG-----GTCTG-TGC--
i xenTro7.KB021950           C 0 C 0
e danRer10.chr19             48218196 5198 -  48790377 I
e ornAna1.Contig16971            8823  0 -     13060 I
e tetNig2.chr10               6379385  0 +  13272281 I
e punNye1.JH419232            4767720 338 +   5065651 T
e mayZeb1.JH720522             609382  0 -   6649201 I
e hapBur1.JH425491             252157  0 -   1273513 I
e neoBri1.JH422308            3491820  0 -   5414369 I
e araMac1.AOUJ01470298            637  0 -       895 I
e takFla1.KE121866             209731  0 +    220559 I
e fr3.chr10                   9064512  0 +   9126174 I
e ficAlb2.chr4A              19371809  0 +  21182716 I
e anoCar2.chrUn_GL344195        39255 4204 +     59083 I
e pseHum1.KB221209           10759694 18 +  11841479 I
e zonAlb1.KB913045           12575724 5731 +  16390125 I
e colLiv1.KB375822            2439586 31 +   2691611 I
e allMis1.JH739658              38113 134 -    691381 I
e falPer1.KB391026            1266701 11 +   1688145 I
e falChe1.KB397934            1269954 11 -   4640569 I
e macEug2.GL124958              26121  0 -     59456 I
e galGal4.chrUn_AADN03023623     2011  0 -      5081 I
e geoFor1.JH740049             182930  0 -   1550430 I
e melGal1.chr7               34310641  0 -  38723565 I
e anaPla1.KB742696            1254472  0 -   1270250 I
e amaVit1.KB277496               6803 35 -     10329 I
e apaSpi1.KB929104              22324  0 +    818693 I
e cheMyd1.KB605988             134509  0 +    155857 I
e chrPic2.chrUn_KK088237v1    1206822  0 +  22294289 I
e pelSin1.JH211051              23303  0 +    476004 I
e melUnd1.JH556589            7674127 5368 -   7952740 I
e loxAfr3.scaffold_15        39446596 274 -  55688157 I

a score=61041.000000
s hg38.chr8_KI270814v1_alt     119350 56 +    141812 AG-----GAGGACTCCGCAGA--GCC-TGGGATGTGGA--CGCCTTG-----GGGGTG-GAGGGCCCAGGCC
s panTro4.chr8               55021836 56 + 143986469 AG-----GAGGACTCCGCAGC--GCC-TGGGATGTGGA--CGCCTTG-----GGGGTG-GAGGGCCCAGGCC
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8               59162425 56 + 153482349 AG-----GAGGACTCCGCAGC--ACC-TGGGATGTGGA--CGCCTTG-----GGGGTG-GAGGGCCCAGGCC
i ponAbe2.chr8               C 0 C 0
s nomLeu3.chr18              81377330 55 - 104879549 GG-----CAG--TTCCCCCAG--GCC-TTGGATGGGGG--CGCCCTGC----AGGGCG-GAGGGTCCAGGCC
i nomLeu3.chr18              C 0 C 0
s rheMac3.chr8               61689391 56 + 150158102 AG-----GCGGACTCCGCAGC--GCC-TGTGACGTGGA--CGCCTTG-----GAGGCG-GAGGGCCCAGGCC
i rheMac3.chr8               C 0 C 0
s macFas5.chr8               58363219 56 + 146850525 AG-----GCGGACTCCGCAGC--GCC-TGTGATGTGGA--CGCCTTG-----GAGGCG-GAGGGCCCAGGCC
i macFas5.chr8               C 0 C 0
s chlSab2.chr8               53283756 56 + 139301422 AG-----GCGGACTCCGCAGC--GCC-TGTGATGTGGA--CGCCTAG-----GAGGCG-GAGGGCCCAGGCC
i chlSab2.chr8               C 0 C 0
s calJac3.chr7               33671291 57 + 155834243 GG-----CAGGGGTCCCCCAG--GTC-GGGGATGAGGG--CGCCCTGC----AGGGCG-GAGGGCCCAGGCC
i calJac3.chr7               C 0 C 0
s vicPac2.KB632521            1176639 38 -   7152218 AG-----G----CTCCTGGAA--ACC-CCTGT--------------------AGGGTC-CAGCGGCCA-GCA
i vicPac2.KB632521           C 0 C 0
s camFer1.KB018161               5230 38 -     34802 AG-----G----CTCCTGGAA--ACC-CCTGC--------------------AGGGTC-CAGCGCCCA-GAA
i camFer1.KB018161           C 0 C 0
s cerSim1.JH767738            9901917 47 +  34209287 AG-----A----CCCCGCAGC--ACC-TGGGT----------CCTGGCCT--GGGGTC-TAGCGCCCACGGC
i cerSim1.JH767738           C 0 C 0
s pteAle1.KB031146            3116500 61 -   3193751 AGGTTCCG----CCCCGTAGC--ACC-TCGGTGGTGGG--GACCTTACCT--GGGGTCTTAGTGCTCAGGCC
i pteAle1.KB031146           C 0 C 0
s myoLuc2.GL429990             231320 53 -   2104649 CG-----------CCCGGGGC--AGG-TCGGTGGTGGA--CACCTTACCT--GGGGTC-TAGCGCCCAGGCC
i myoLuc2.GL429990           C 0 C 0
s loxAfr3.scaffold_15        39446870 57 -  55688157 AG-----TAAGGTTCCTCAGC--ACC-TAGGGCATGGA--AACTACGT----GGGGTC-TAGGGCCCAGGAG
i loxAfr3.scaffold_15        I 274 C 0
s triMan1.JH594766              13479 57 +   6345240 gg-----tAAGGCTCCTTAGC--ACC-TAGGGCGTGGA--AACTACGT----GGGGTC-TAGCGCCCAGTCG
i triMan1.JH594766           C 0 C 0
s taeGut2.chr28               3062003 63 +   4963201 GA-----GCTGCCCCCACCAATGGGC-TGTACCGGGGC--TCCCCTGTGTGCTGGGTG-GGTGGTCCCAGCC
i taeGut2.chr28              I 2 C 0
s xenTro7.KB021950              75696 50 +    103910 --------------CGGGGGC--GCTGTGTGCTGTGGGTCTGTACCG-----GGGGCT-GTGTGCCTGGGGC
i xenTro7.KB021950           C 0 N 0
e danRer10.chr19             48218196 5198 -  48790377 I
e ornAna1.Contig16971            8823  0 -     13060 I
e tetNig2.chr10               6379385  0 +  13272281 I
e punNye1.JH419232            4767720 338 +   5065651 T
e mayZeb1.JH720522             609382  0 -   6649201 I
e hapBur1.JH425491             252157  0 -   1273513 I
e neoBri1.JH422308            3491820  0 -   5414369 I
e araMac1.AOUJ01470298            637  0 -       895 I
e takFla1.KE121866             209731  0 +    220559 I
e fr3.chr10                   9064512  0 +   9126174 I
e ficAlb2.chr4A              19371809  0 +  21182716 I
e anoCar2.chrUn_GL344195        39255 4204 +     59083 I
e pseHum1.KB221209           10759694 18 +  11841479 I
e zonAlb1.KB913045           12575724 5731 +  16390125 I
e colLiv1.KB375822            2439586 31 +   2691611 I
e allMis1.JH739658              38113 134 -    691381 I
e falPer1.KB391026            1266701 11 +   1688145 I
e falChe1.KB397934            1269954 11 -   4640569 I
e macEug2.GL124958              26121  0 -     59456 I
e galGal4.chrUn_AADN03023623     2011  0 -      5081 I
e geoFor1.JH740049             182930  0 -   1550430 I
e melGal1.chr7               34310641  0 -  38723565 I
e anaPla1.KB742696            1254472  0 -   1270250 I
e amaVit1.KB277496               6803 35 -     10329 I
e apaSpi1.KB929104              22324  0 +    818693 I
e cheMyd1.KB605988             134509  0 +    155857 I
e chrPic2.chrUn_KK088237v1    1206822  0 +  22294289 I
e pelSin1.JH211051              23303  0 +    476004 I
e melUnd1.JH556589            7674127 5368 -   7952740 I

a score=-3425.000000
s hg38.chr8_KI270814v1_alt     119406 2 +    141812 AT
s panTro4.chr8               55021892 2 + 143986469 AT
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8               59162481 2 + 153482349 AT
i ponAbe2.chr8               C 0 C 0
s nomLeu3.chr18              81377385 2 - 104879549 AC
i nomLeu3.chr18              C 0 C 0
s rheMac3.chr8               61689447 2 + 150158102 AT
i rheMac3.chr8               C 0 C 0
s macFas5.chr8               58363275 2 + 146850525 AT
i macFas5.chr8               C 0 C 0
s chlSab2.chr8               53283812 2 + 139301422 AT
i chlSab2.chr8               C 0 C 0
s calJac3.chr7               33671348 2 + 155834243 AC
i calJac3.chr7               C 0 C 0
s vicPac2.KB632521            1176677 2 -   7152218 GA
i vicPac2.KB632521           C 0 C 0
s camFer1.KB018161               5268 2 -     34802 GA
i camFer1.KB018161           C 0 C 0
s cerSim1.JH767738            9901964 2 +  34209287 TA
i cerSim1.JH767738           C 0 C 0
s pteAle1.KB031146            3116561 2 -   3193751 AA
i pteAle1.KB031146           C 0 C 0
s myoLuc2.GL429990             231373 2 -   2104649 GA
i myoLuc2.GL429990           C 0 C 0
s loxAfr3.scaffold_15        39446927 2 -  55688157 GT
i loxAfr3.scaffold_15        C 0 C 0
s triMan1.JH594766              13536 2 +   6345240 GT
i triMan1.JH594766           C 0 C 0
s taeGut2.chr28               3062066 2 +   4963201 CT
i taeGut2.chr28              C 0 n 0
e danRer10.chr19             48218196 5198 -  48790377 I
e ornAna1.Contig16971            8823 0 -     13060 I
e tetNig2.chr10               6379385 0 +  13272281 I
e punNye1.JH419232            4767720 338 +   5065651 T
e mayZeb1.JH720522             609382 0 -   6649201 I
e hapBur1.JH425491             252157 0 -   1273513 I
e neoBri1.JH422308            3491820 0 -   5414369 I
e araMac1.AOUJ01470298            637 0 -       895 I
e takFla1.KE121866             209731 0 +    220559 I
e fr3.chr10                   9064512 0 +   9126174 I
e ficAlb2.chr4A              19371809 0 +  21182716 I
e anoCar2.chrUn_GL344195        39255 4204 +     59083 I
e pseHum1.KB221209           10759694 18 +  11841479 I
e zonAlb1.KB913045           12575724 5731 +  16390125 I
e colLiv1.KB375822            2439586 31 +   2691611 I
e allMis1.JH739658              38113 134 -    691381 I
e falPer1.KB391026            1266701 11 +   1688145 I
e falChe1.KB397934            1269954 11 -   4640569 I
e macEug2.GL124958              26121 0 -     59456 I
e galGal4.chrUn_AADN03023623     2011 0 -      5081 I
e geoFor1.JH740049             182930 0 -   1550430 I
e melGal1.chr7               34310641 0 -  38723565 I
e anaPla1.KB742696            1254472 0 -   1270250 I
e amaVit1.KB277496               6803 35 -     10329 I
e apaSpi1.KB929104              22324 0 +    818693 I
e cheMyd1.KB605988             134509 0 +    155857 I
e chrPic2.chrUn_KK088237v1    1206822 0 +  22294289 I
e pelSin1.JH211051              23303 0 +    476004 I
e melUnd1.JH556589            7674127 5368 -   7952740 I

a score=340377.000000
s hg38.chr8_KI270814v1_alt     119408 114 +    141812 C-TTTATGAGCAGCAA-AATAAA-CCCAAAAC-TTTAGCTGGT---T--CC---TCCACCCACAGTTCCTCTTACAGAGCACTTCAGAGAGAACTTTAAA----GTGA-TT------------------------------TA----A----TAAAATTAAGTATATAT
s panTro4.chr8               55021894 114 + 143986469 C-TTTATGAGCAGCAA-AATAAA-CCCAAAAC-TTTAGCTGGT---T--CC---TTCACCCACAGTTTCTCTTACAGAGCACTTTAGAGAGAACTTTAAA----GTGA-TT------------------------------TA----A----CAAAATTAAGTATATAT
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8               59162483 114 + 153482349 C-TTTATGAGCAGCAA-AAGAAA-CGCAAAAC-TTTAGCTGGT---T--CC---TCCACCCACAGTTCCTGTTACAGAGCACTTTAGAGAGAACTTTAAA----GTGA-TT------------------------------TA----A----CAAAATTAAATGTATAT
i ponAbe2.chr8               C 0 C 0
s nomLeu3.chr18              81377387 111 - 104879549 C-TT----------AA-AATCAA-CCCCAAAC-TTTAGCTGCTTTCT--CC---TTCACTCCCACTTCCTCTCACAGAGCACTGTGTAGAGAATTTTAAA----GTGA-TT------------------------------TAACTTA----CAAAATTAAGTACATAC
i nomLeu3.chr18              C 0 I 2
s rheMac3.chr8               61689449 115 + 150158102 C-TTTATGAGCAGCAA-AAAGAA-TCCAAAACTTTTAGCTGGT---T--CC---TCTACCCCCAGTTCCTCTTACAGAGCACTTTAGAGAGAACTTTAAA----GTGA-TT------------------------------TA----A----CAAAATTAAGTATATAT
i rheMac3.chr8               C 0 C 0
s macFas5.chr8               58363277 115 + 146850525 C-TTTATGAGCAGCAA-AAAGAA-TCCAAAACTTTTAGCTGGT---T--CC---TCTACCCCCAGTTCCTCTTACAGAGCACTTTAGAGAGAACTTTAAA----GTGA-TT------------------------------TA----A----GAAAATTAAGTATATAT
i macFas5.chr8               C 0 C 0
s chlSab2.chr8               53283814 114 + 139301422 C-TTTCTGAGCAGCAA-AAAGAA-TCCAAAAC-TTTAGCTGGT---T--CC---TCTACCCACAGTTCCTCTTACAGAGCACTTTGGAGAGAACTTTAAA----GTGA-TT------------------------------TA----A----CAAAATTAAGTATATAT
i chlSab2.chr8               C 0 C 0
s calJac3.chr7               33671350 110 + 155834243 C-TT----------AA-AATCAG-CCCCAAAC-TTTAGCTGCT---TTCCC---TTCACTCCCACTTCCCATCACAGAGCAATGTCTAGAGAATTTTAAA----GTGC-TT------------------------------TA----ACTCTCAAAATTAAGTACACAC
i calJac3.chr7               C 0 I 2
s vicPac2.KB632521            1176679 130 -   7152218 C-TTTCTAGGCGGGAA-AAGC------------TTTAGCTGGT---T--TTGGACTCACTCATAATTCTCTTTATAGAGCACTTTACTGACAGTTTTTAT----ATGA-TTTAACTGCAAAACAGTGATAATA-------AAA----A----TGAAATTGAGCATAAAC
i vicPac2.KB632521           C 0 I 9
s camFer1.KB018161               5270 126 -     34802 C-TTTCTAGGCGGGAA-AAGC------------TTTAGCTGGT---T--TTGG----ACTCATAATTCTCTTTATAGAGCACTTTACTGACAGTTTTTAT----ATGA-TTTAACTGCAAAACAGTGATaata-------aaa----a----tgaaattaagcataaac
i camFer1.KB018161           C 0 I 9
s cerSim1.JH767738            9901966 125 +  34209287 C----GTGAGCAGCAG-AAACA------CACTCTTGAGCTGGT---T--TCGGACCCACTCATAATTCCTCTTATAGAGCGCTTCACTGACAATTTTAAA----GTGATTT--------AACTGTCAATAATA--------AT----A----GAAAATTAAGTATATAC
i cerSim1.JH767738           C 0 I 2
s pteAle1.KB031146            3116563 119 -   3193751 C-TTTATGAGCAGCAGTAAAGA------AAAC----------T---T--TAAGACTCACTCATAATTCCTTTTATAAAGCACTTTAGTGACAATTTTAAA----GTGA-TT--------AAATATCAATAATA-------GAA----A----CAAAATTAAATATATAC
i pteAle1.KB031146           C 0 I 2
s myoLuc2.GL429990             231375 122 -   2104649 CTTTTATGAGCAGCAA-GAACA------AAAC----------T---T--AAGGACCCGCCCCTAATTCCTCTTACAGAGCAC-GTACTGACATTTTTAAGTGATTTAA-TT--------AAATAGCAATAATA-------GAC----A----CGAAATTAAGTATATTT
i myoLuc2.GL429990           C 0 I 2
s loxAfr3.scaffold_15        39446929 143 -  55688157 C-TTTATGAGCAGCGA-GAGCAAAAACAAAAT-TTTAGGTGTT---T--TCCAGTCTATTTATAATATCCCTTATAGAGCACTTTATTGAG--TTTTAAA----GTGA-TT---TAACTGAATGTTAATAATAAGGGAAAGAA----A----TAAGATGTAGTATGTAC
i loxAfr3.scaffold_15        C 0 C 0
s triMan1.JH594766              13538 136 +   6345240 C-TTTACGAGCAGCAA-AAGCAA----AAAAC-TTTAGCTGGT---T--TGCGATGCACTCATAATACCCGTCATAGAGCACT---TTGAC--TTTTAAA----GTGA-TT---TAACTGAATGTTAATAATAAAGGAAAGAA----A----TAAGATTTAGTATATAC
i triMan1.JH594766           C 0 C 0
e danRer10.chr19             48218196 5198 -  48790377 I
e ornAna1.Contig16971            8823   0 -     13060 I
e tetNig2.chr10               6379385   0 +  13272281 I
e punNye1.JH419232            4767720 338 +   5065651 T
e mayZeb1.JH720522             609382   0 -   6649201 I
e hapBur1.JH425491             252157   0 -   1273513 I
e neoBri1.JH422308            3491820   0 -   5414369 I
e araMac1.AOUJ01470298            637   0 -       895 I
e takFla1.KE121866             209731   0 +    220559 I
e fr3.chr10                   9064512   0 +   9126174 I
e ficAlb2.chr4A              19371809   0 +  21182716 I
e anoCar2.chrUn_GL344195        39255 4204 +     59083 I
e pseHum1.KB221209           10759694  18 +  11841479 I
e zonAlb1.KB913045           12575724 5731 +  16390125 I
e colLiv1.KB375822            2439586  31 +   2691611 I
e allMis1.JH739658              38113 134 -    691381 I
e falPer1.KB391026            1266701  11 +   1688145 I
e falChe1.KB397934            1269954  11 -   4640569 I
e macEug2.GL124958              26121   0 -     59456 I
e galGal4.chrUn_AADN03023623     2011   0 -      5081 I
e geoFor1.JH740049             182930   0 -   1550430 I
e melGal1.chr7               34310641   0 -  38723565 I
e anaPla1.KB742696            1254472   0 -   1270250 I
e amaVit1.KB277496               6803  35 -     10329 I
e apaSpi1.KB929104              22324   0 +    818693 I
e cheMyd1.KB605988             134509   0 +    155857 I
e chrPic2.chrUn_KK088237v1    1206822   0 +  22294289 I
e pelSin1.JH211051              23303   0 +    476004 I
e melUnd1.JH556589            7674127 5368 -   7952740 I
e taeGut2.chr28               3062068   0 +   4963201 I

a score=170626.000000
s hg38.chr8_KI270814v1_alt     119522 28 +    141812 -----TGTTTTATTTTTAATGCACACATTTTAA
s panTro4.chr8               55022008 28 + 143986469 -----CGTTTTATTTTTAATGCACACATTTTAA
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8               59162597 28 + 153482349 -----TGTTTTATTTTTAATGTACACATTTTAA
i ponAbe2.chr8               C 0 C 0
s nomLeu3.chr18              81377500 28 - 104879549 -----GGTTTTACTTTTAATGTACAGGTTTTAA
i nomLeu3.chr18              I 2 C 0
s rheMac3.chr8               61689564 26 + 150158102 -----CGTTTTATTTTTAATGTACACGTTT--G
i rheMac3.chr8               C 0 C 0
s macFas5.chr8               58363392 26 + 146850525 -----CGTTTTATTTTTAATGTACACGTTT--G
i macFas5.chr8               C 0 C 0
s chlSab2.chr8               53283928 26 + 139301422 -----TGTTTTATTTTCAATGTACACGTTT--G
i chlSab2.chr8               C 0 C 0
s calJac3.chr7               33671462 28 + 155834243 -----TGTTTTACTTTTAACGGACAGATTTTAA
i calJac3.chr7               I 2 C 0
s otoGar3.GL873762            1558381 28 -   1847653 -----TGTTTTATTTTTAATGTACACGTTTCAA
i otoGar3.GL873762           N 0 C 0
s vicPac2.KB632521            1176818 28 -   7152218 -----CATCTTATTTTTAATGTACACATTTTTA
i vicPac2.KB632521           I 9 I 1
s camFer1.KB018161               5405 28 -     34802 -----CATCTTATTTTTAATGTACACATTTTTA
i camFer1.KB018161           I 9 I 1
s cerSim1.JH767738            9902093 27 +  34209287 -----CACTTTATTTTTAACGGACAC-TTTTTA
i cerSim1.JH767738           I 2 I 1
s pteAle1.KB031146            3116684 28 -   3193751 -----CAtttaatttttgatgtttacattttca
i pteAle1.KB031146           I 2 I 1
s myoLuc2.GL429990             231499 28 -   2104649 -----CATTATATATTTGATGTTCACATTTTTA
i myoLuc2.GL429990           I 2 I 1
s loxAfr3.scaffold_15        39447072 29 -  55688157 AA----ATTTTATTTTTGATGTGCACATTTAAA
i loxAfr3.scaffold_15        C 0 C 0
s triMan1.JH594766              13674 33 +   6345240 AAATATATTTTATTTTTAATGTACACATTTAAA
i triMan1.JH594766           C 0 C 0
e danRer10.chr19             48218196 5198 -  48790377 I
e ornAna1.Contig16971            8823  0 -     13060 I
e tetNig2.chr10               6379385  0 +  13272281 I
e punNye1.JH419232            4767720 338 +   5065651 T
e mayZeb1.JH720522             609382  0 -   6649201 I
e hapBur1.JH425491             252157  0 -   1273513 I
e neoBri1.JH422308            3491820  0 -   5414369 I
e araMac1.AOUJ01470298            637  0 -       895 I
e takFla1.KE121866             209731  0 +    220559 I
e fr3.chr10                   9064512  0 +   9126174 I
e ficAlb2.chr4A              19371809  0 +  21182716 I
e anoCar2.chrUn_GL344195        39255 4204 +     59083 I
e pseHum1.KB221209           10759694 18 +  11841479 I
e zonAlb1.KB913045           12575724 5731 +  16390125 I
e colLiv1.KB375822            2439586 31 +   2691611 I
e allMis1.JH739658              38113 134 -    691381 I
e falPer1.KB391026            1266701 11 +   1688145 I
e falChe1.KB397934            1269954 11 -   4640569 I
e macEug2.GL124958              26121  0 -     59456 I
e galGal4.chrUn_AADN03023623     2011  0 -      5081 I
e geoFor1.JH740049             182930  0 -   1550430 I
e melGal1.chr7               34310641  0 -  38723565 I
e anaPla1.KB742696            1254472  0 -   1270250 I
e amaVit1.KB277496               6803 35 -     10329 I
e apaSpi1.KB929104              22324  0 +    818693 I
e cheMyd1.KB605988             134509  0 +    155857 I
e chrPic2.chrUn_KK088237v1    1206822  0 +  22294289 I
e pelSin1.JH211051              23303  0 +    476004 I
e melUnd1.JH556589            7674127 5368 -   7952740 I
e taeGut2.chr28               3062068  0 +   4963201 I

a score=640215.000000
s hg38.chr8_KI270814v1_alt     119550 101 +    141812 AAGATAATGTTAGATACGTTATGGAAAGGTACATAATGAAAGAAATAATTCCC---ATAATATATCACCTTCTGGGCTAATAATTTTTTGGCTAAAATCCAATA----
s panTro4.chr8               55022036 101 + 143986469 AAGATAATGTTAGATACATTATAGAAAGGTACATAATGAAAGAAATAATTCCC---ATAATATATCACCTTCTGGGCTAAGAATTTTTTGGCTAAAATCCAATA----
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8               59162625 101 + 153482349 AAGATAATGTTAGATACATTATAGAAAGGTACATAATGAAAGAAATAATTCCC---ATAATATATCACCTTCTGGGCTAAGAATTTTTTGGCTAAAATCCAATA----
i ponAbe2.chr8               C 0 C 0
s nomLeu3.chr18              81377528  93 - 104879549 AAGATAATGTTAGATACATTATGAAATGGTGCATAAT----GAAACAATTCCC---ATAATATATTAACTTCTTGGCTAAAAATTTTTTG----AAGTCCAGTA----
i nomLeu3.chr18              C 0 I 5
s rheMac3.chr8               61689590 101 + 150158102 AAGATAATGTTAGATACATTATAGAAAGGTACATAATGAAAGAAAGAATTCCC---ATAATATATCACCTTCTGGGCTAAGAATTTTTTGACTAAAATCCAATA----
i rheMac3.chr8               C 0 C 0
s macFas5.chr8               58363418 101 + 146850525 AAGATAATGTTAGATACATTATAGAAAGGTACATAATGAAAGAAAGAATTCCC---ATAATATATCACCTTCTGGGCTAAGAATTTTTTGACTAAAATCCAATA----
i macFas5.chr8               C 0 C 0
s chlSab2.chr8               53283954  97 + 139301422 AAGATAATGTTAGATACATTATAGAAAGGTACATAAT----GAAAGAATTCCC---ATAATATATCACCTTCTGGGCTAAGAATGTTTTGACTAGAATCCAATA----
i chlSab2.chr8               C 0 C 0
s calJac3.chr7               33671490  97 + 155834243 AAGACAATGTTAGCTACTTTATGGGATAGTGCAAAATGA----AATAATTCCC---ATAATATATGAACTTCTTGGCAAAAAGTTCTTTGGATAAAGTCCAATA----
i calJac3.chr7               C 0 I 5
s saiBol1.JH378196            4058672 101 +   9144518 AACATAATATTATATAAGCTATGGATAGGTTCATAAGGAGAGCAATAATTCCC---ATGATATTTCAACTTCTGGGCTAAAAATTCTTCAGATTATATCTAATA----
i saiBol1.JH378196           N 0 I 5
s otoGar3.GL873762            1558409  86 -   1847653 AACACAAT--------TATTATAGAAAGACGAATGAAGAGAGAAATAATT----------TGGCCCAACTTCTGGGCTACAACTTCTTCAGATAAAATTCAGTA----
i otoGar3.GL873762           C 0 I 4
s vicPac2.KB632521            1176847 102 -   7152218 ACCATCATGTTA--TATATTACAGAAAAGTGTGTAATGAGAAAAATAATTCCCATTATGATAGATCAGTTTCTGGGATAAAAATTCTTCGAATACAATTTGATA----
i vicPac2.KB632521           I 1 I 4
s camFer1.KB018161               5434 102 -     34802 ACCATCATGTTA--TATATTACAGAAAAGTGTGTAATGAGAAAAATAATTCCCATTATGATAGATCAGCTTCTGGGATAAAAATTCTTCGAATACAATTTGATA----
i camFer1.KB018161           I 1 I 4
s cerSim1.JH767738            9902121  99 +  34209287 ACCAAAATGTTA--TATGTTATAGAAAAGTGGGTAATGAGAAAAATAATTCCC---ATAATAGATGAACTTCTGGGCTAAAAAGTCTTCTGATAAAATCCAATA----
i cerSim1.JH767738           I 1 I 4
s pteAle1.KB031146            3116713  99 -   3193751 agtgtaatgttA--TATACTATTGAAAAGTGCATAATGGGAAAAGCAGTTCTC---ATAATAGATCAATTTGTGGGGTAAAAATTCTTCGGATAAAATCCAAGA----
i pteAle1.KB031146           I 1 I 4
s myoLuc2.GL429990             231528  99 -   2104649 ACCATAATGCTG--TATATTATAGGCAAGTGCATAATGAGAGAAATAATTCCC---ATAATAGATCAACTTTTGGCCTAAAAATTCTTCAGATAAAATCCAATA----
i myoLuc2.GL429990           I 1 I 4
s loxAfr3.scaffold_15        39447101 102 -  55688157 ACCATAATGCTA--TACGTTATAGAAA-GTGCATAATGAGAGACATAATTGCC---GTAATATATCAATTTATGGGCTAAAAATTCTTTTGATAAAATCCAGTTTCCG
i loxAfr3.scaffold_15        C 0 C 0
s triMan1.JH594766              13707 100 +   6345240 ACCATAAGGCTA--TACATTATAGAAA-GTGCATAATGAGAGAAGGAGCTCCC---ATAATATATCAATTTATGAGCTAAAAAATCTTTGGAT--AATCCAATTTCCA
i triMan1.JH594766           C 0 C 0
e danRer10.chr19             48218196 5198 -  48790377 I
e ornAna1.Contig16971            8823   0 -     13060 I
e tetNig2.chr10               6379385   0 +  13272281 I
e punNye1.JH419232            4767720 338 +   5065651 T
e mayZeb1.JH720522             609382   0 -   6649201 I
e hapBur1.JH425491             252157   0 -   1273513 I
e neoBri1.JH422308            3491820   0 -   5414369 I
e araMac1.AOUJ01470298            637   0 -       895 I
e takFla1.KE121866             209731   0 +    220559 I
e fr3.chr10                   9064512   0 +   9126174 I
e ficAlb2.chr4A              19371809   0 +  21182716 I
e anoCar2.chrUn_GL344195        39255 4204 +     59083 I
e pseHum1.KB221209           10759694  18 +  11841479 I
e zonAlb1.KB913045           12575724 5731 +  16390125 I
e colLiv1.KB375822            2439586  31 +   2691611 I
e allMis1.JH739658              38113 134 -    691381 I
e falPer1.KB391026            1266701  11 +   1688145 I
e falChe1.KB397934            1269954  11 -   4640569 I
e macEug2.GL124958              26121   0 -     59456 I
e galGal4.chrUn_AADN03023623     2011   0 -      5081 I
e geoFor1.JH740049             182930   0 -   1550430 I
e melGal1.chr7               34310641   0 -  38723565 I
e anaPla1.KB742696            1254472   0 -   1270250 I
e amaVit1.KB277496               6803  35 -     10329 I
e apaSpi1.KB929104              22324   0 +    818693 I
e cheMyd1.KB605988             134509   0 +    155857 I
e chrPic2.chrUn_KK088237v1    1206822   0 +  22294289 I
e pelSin1.JH211051              23303   0 +    476004 I
e melUnd1.JH556589            7674127 5368 -   7952740 I
e taeGut2.chr28               3062068   0 +   4963201 I

a score=1265218.000000
s hg38.chr8_KI270814v1_alt     119651 241 +    141812 TTTTA----TATCAATG----AATACCTATGTAAATATGTT--CTTTGCTGAGAGACCTTAGAAGGAAACTTTGAAGTAGGAAGAAGG-TTCACGTTCTTGAA--TAAGAAGACTCATTTTTCTCGAGGTGTGAGATC--------TTTATTAATTTTACATAAATC----AAAGTTATCAAAG--TTAACAT-TTTT-GAATTACA--CATG----CTGTC----TTTTAATATTAAGATGGC---TTAACA-----T-----TTTTGTA--ATGGAGA-AAAAAAGTCTTGCC--------T
s panTro4.chr8               55022137 241 + 143986469 TTTTA----TATCAATG----AATACCTACGTAAATATGTT--CTTTGCTGAAAGACCTTAGAAGGAAACTTTGAAGTAGGAAGAAGT-TTCACGTTCTTAAA--TAAGAAGATTCATTTTTCTCGAGGTGTGAGATC--------TTTATTAATTTTACATAAATC----ACAGTTATCAAAG--TTAATAT-TTTT-GAATTACA--CATG----CTGTC----TTTTAATATTAAGATGGC---TTAACA-----T-----TTTTGTA--ATGGAGA-AAAAAAGTCTTGCC--------T
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8               59162726 241 + 153482349 TTTTA----TATCAATG----AATACCTATGTAAATATGTT--CTTTGCTGAGAGTCCTTTGAAGGAAACTTTGAAGTAGGAAGAAGG-TTCATGTTCTTGAA--TAGGAAGACGCATTTTTCTTGAGATGTGAGATC--------TTTATTAATTTTACATAAATC----AAAGTTATCAAAG--TTAACAT-TTTT-GAATTACA--CATG----CTGTC----TTTTAATATTATGATGGC---TTAACA-----T-----TTTTGTA--ATGGAGA-AAAAAAGTCTTGCC--------T
i ponAbe2.chr8               C 0 C 0
s nomLeu3.chr18              81377626 261 - 104879549 TTCAA----TATCAATG----AATGTCTATGTAAATATATT--CCTTGCTGAGGGACCTTAGAAGGTAACTTTGAGGtgggaagatgg-tttatgtttttgaatttaagaagactcatttttctcaagatgcaagttc--------tttatcagttttacataaaccaaataaagttatcaacgttttaacat-ttttaaaattaca--cacg----ctgtc----ctttactattgtgatgacatttaaaaa-----a-----ttttgta--atggagt-agaaaagtcttgcccttctagat
i nomLeu3.chr18              I 5 C 0
s rheMac3.chr8               61689691 243 + 150158102 TTTTA----TATCAATG----AATGCCTATGTAAATATGTT--CTTTGCTGAGAGACCTTAGAAGGAAACTTTGAAGTGAGAAGATGG-TTCATGTTCTTGAA--TAAGAAGACTCATTTTTCTCAAAGTGTGAGATC--------TTTATTAATTTTACCT---------AAAGTTATCAAAG--TTAACAT-TTTT-GAATTACA--CATG----CAGTC----TTTTAGTATTGTGATGAC---GTAACA-----T-----TTTTGTA--ATGCAG--AAAAATGTcttgcctttctagat
i rheMac3.chr8               C 0 C 0
s macFas5.chr8               58363519 243 + 146850525 TTTTA----TATCAATG----AATGCCTATGTAAATATGTT--CTTTGCTGAGAGACCTTAGAAGGAAACTTTGaagtgagaagatgg-ttcatgttcttgaa--taagaagactcatttttctcaaagtgtgagatc--------tttattaattttacct---------aaagTTATCAAAG--TTAACAT-TTTT-GAATTACA--CATG----CAGTC----TTTTAGTATTGTGATGAC---GTAACA-----T-----TTTTGTA--ATGCAG--AAAAATGTCTTGCCTTTCTAGAT
i macFas5.chr8               C 0 C 0
s chlSab2.chr8               53284051 243 + 139301422 TTTTA----TATCAATG----AATGCCTATGTAAATATGTT--CTTTGCTGAGAGACCTTAGAAGGAAACTTTGaaatgagaagatgg-ttcatgttcttgaa--taagaagactcatttttctcaaggtgtgagatc--------tttattaattttacct---------aaagTTATCAAAG--TTAACAT-TTTT-GAACTACA--CATG----CAGTC----TTTTAGTATTGTGATGAT---GTAACA-----T-----TTTTGTA--ATGCAG--AAAAATGTCTTGCCTTTCTAGAT
i chlSab2.chr8               C 0 C 0
s calJac3.chr7               33671592 236 + 155834243 TATGA----TATCAATA----AATGTCTATGTAAAGATGTT--CTTTGCTGAGGGACCTTAGAAGGAAATTTTGAGGTGGAAAGATGA-CTTCTG----------------------TTTTTCTCAAGGTGTGAGTT---------TTCATCACTTTTACACAAACCAAATAAAGTTATCAATGTTTTGACATATTTT-AAATTGCA--CGTG----CTGTC----TTTTACGATTGTGATGACATTTTAAAA-----A------CTTGTA--ATGGAGT-G-GAAAATCTTGCCCCTCTAGAA
i calJac3.chr7               I 5 C 0
s saiBol1.JH378196            4058778 267 +   9144518 TTTTA----TATCAATG----TACACCTATGTAAATACGTT--CTTCACTGAGGAACCTTAGAAGGAAACTTTGAAGTGGGAA-ATGG-TTCCTGTTCTTGAG--TAGGAAGATTCATTTTTCTCAAGATGTGAGCTCTT----TGTTTATCAACTTTAGATAAACCAAATAAAAATATCAAAGTTTTAACAT-TTTA-AAATTAAA--CTTG---TCCGTC----TTTTACTATTGTGATGACATTAAAAAA-----ATTTTTTTTTGTA--GTGAGGT-GAGAATGACTTGCCTTTCTGTAT
i saiBol1.JH378196           I 5 C 0
s otoGar3.GL873762            1558499 208 -   1847653 TTTTA----TATCCATT----TACGGC-ATGTATATAAACT--CTTTGCTGACAGACCTCGTAAGGAAAC--TGAAGTGGGAAGATGGTTTCATGTTTTTAAG--TAGGAAGATTTGCATTTCTCAAAATGCGAACTT--------------------ACCC---------AAAGTT---------TTAAGAC-TTTT-GAGTTACAGTTGTG----AGGTC----------------AATGAG-----AAAA-----T-----TTTTGTA--ATGAAGT-GAATAGA---TGCCCCTctagat
i otoGar3.GL873762           I 4 C 0
s vicPac2.KB632521            1176953 256 -   7152218 TTTTA----TGTCAGTGTACATACACATTTGTACATATGTT--CTTTACTGAAGGACCTTAGGAGACAACTTGAAAGTGGGAAGATGG-CT-GTGTTATTGAA--TAGGTGGACTCAT-TTTCTTAAAATGTATAGTCTTCCCATATTTATCAGCTTTACATACACCAAGTAAACATATCATGATCTTAAAAA-TGTT-GAGTTACA--CATG----CTGTT----TTTAATTGTTGTGATGAAA--TTCATA-----T-----TTTTGTG--TGGTAG---ACAAAGCTTTGCCC--------
i vicPac2.KB632521           I 4 I 8
s camFer1.KB018161               5540 251 -     34802 TTTTA----TGTCAGTGTACATACACATTTGTACATATGTT--CTTTACTGAAGGACCTTAGAAGACAACTTGAAAGTGGGAAGATGG-CT-GTGTTATTGAA--TCGGTGGACTCAT-TTTCTTAAAATGTATAGTCTTCCCATATTTATCAACTTTACGTACACCAAGTAAA-----CATGATCTTAAAAA-TTTT-GAGTTACA--CATG----CTGTT----TTTAATTGTTGTGATGAAA--TTCATA-----T-----TTTTGTG--TGGTAG---ACAAAGCTTTGCCC--------
i camFer1.KB018161           I 4 I 8
s orcOrc1.KB316915            2905607 237 -  11690531 TTTTA----TATCAGTG----TACACCTATGTATATATGTT--CTCTACTGAAGGACCTTAGAAGACAGCTTTGAAGTGGGAAGATGG-CT-ATGTCCTTGAA--TAGGAAGACTCAT-TTTCTTAAAA--TATGGTCTTCCCATATT-------------TAAACCAAATAAGCATATGGTGGTTTAAAATT-TTTT-GAGTTTCA--CATG----CTTTC----TTTATTTGTTGTGATGAAA--TTAAAA-----G-----TTTTATG--TAGTAG---ACAAAGATTTGCCC--------
i orcOrc1.KB316915           N 0 I 8
s cerSim1.JH767738            9902224 258 +  34209287 TTTTG----TATCAGTG----TACACCTCTGTATATATATT--CTGTACTGAGGGACCTTAGAAGGAAACTTTGAAGTGGGCAGACGG-CT-GTGTTCCTGAA--TAGGAGGACTCAT-TTTCTCAAAATCTGCGCTCTTCCTATATTTATCAGTTTTACATAAACCAAATAAAAATATCATGGTTTTAAAAG-TTTT-ATGTTACA--CACA----CAGACTGTCTTTTATTGTTGTGATGAAA--TTAAGAAAA--T-----TTTTGTG--TGGTAG---ATGAGA-TTTCCCC--------
i cerSim1.JH767738           I 4 I 8
s pteAle1.KB031146            3116816 251 -   3193751 TTTTA----TATAAGTA----TACACC--TATCTATATATT--CTTTATT--GGGACCTTAAAAGGGAACTTTGAAGGGAGAAGATGC-CT-GTAGTCTTAAG--TAGGGAGACTCAT-TTTCTCAAAATGTGTGCTCTTCCTGTATTTATCGATTTTCCATAAACCAACTAAAACT---ATGGTTTTAAAAA-TTTT-GAGTTACA--CATG----CTGTTTATCTTTTAATGTTGTGATGAAA--TTAAGAAAA--A-----ATTTGTA--TAGTAG---ACAAAA-TTTGCCC--------
i pteAle1.KB031146           I 4 I 7
s myoLuc2.GL429990             231631 244 -   2104649 ATATA----AAACAGTG----TACACC--------TATGTT--CTTTATTGAGGGACCTCCAAAGGGAACTTTGAAGTGAAAAGATAG-CT-GTGGTCTTGAA--TAGGAAGATTCAT-TTTCTCAAAATGTGTGTTCTTCCTATATTTATTAATTTTACATAAACAA---TAAAGT---ATGGTTTTAAAAT-TTTT-GAGTCACA--CATG----CTGT-----CTTTATTGTTGTGGTGAAA--TTAGGAAAATTA-----CTGTGTAGTTAGTAG---GTAaagctttgccc--------
i myoLuc2.GL429990           I 4 I 8
s loxAfr3.scaffold_15        39447203 263 -  55688157 TTTGGATATTATCATTA----TCTACCTGTGTAGCTATGTACTCTTTACCAAGGGACCTTAGAAGGAAACTTCGAGGTGGGACGATGG-TTCATGCTCTTGAA--GAAGAAGACTAGCTTTTCTCAGAATAGGAGCCCCTTCTATATTTATCAATTTTACGTAAACCAAATAAAAATATCAGGGTTTTAAAAA-AATT-GAATTACA--TATGATGTCTGTC----TTTTACTGTTGTGATAAT------AAG-----G-----TTTTGTA--AAGAGGTAAACAAAGACTGGCCC--------
i loxAfr3.scaffold_15        C 0 C 0
s triMan1.JH594766              13807 251 +   6345240 TTTTA----TGTCATTA----TCTACCTGTGTAGGTGTGTA--CTTTACCGAGGGACCTTAGAATGAAACTCCGAAGTAGGACGATGG-TTCATGTTCTTGAA--TAAGAAGACTCGTTTTTCTCAAAATGTGAG--CCTTCTA----TATCAATTTTACATAAACCAAATAAAAATATCAAGGTTTCAAAAA-ATTT-GAGTTACA--TATGGTGTCTGTC----TTTTACTGTTGTGATGCT------AAG-----T-----TTTTGTA--AAGAGGTAAACAAAGACTGGCCC--------
i triMan1.JH594766           C 0 C 0
e danRer10.chr19             48218196 5198 -  48790377 I
e ornAna1.Contig16971            8823   0 -     13060 I
e tetNig2.chr10               6379385   0 +  13272281 I
e punNye1.JH419232            4767720 338 +   5065651 T
e mayZeb1.JH720522             609382   0 -   6649201 I
e hapBur1.JH425491             252157   0 -   1273513 I
e neoBri1.JH422308            3491820   0 -   5414369 I
e araMac1.AOUJ01470298            637   0 -       895 I
e takFla1.KE121866             209731   0 +    220559 I
e fr3.chr10                   9064512   0 +   9126174 I
e ficAlb2.chr4A              19371809   0 +  21182716 I
e anoCar2.chrUn_GL344195        39255 4204 +     59083 I
e pseHum1.KB221209           10759694  18 +  11841479 I
e zonAlb1.KB913045           12575724 5731 +  16390125 I
e colLiv1.KB375822            2439586  31 +   2691611 I
e allMis1.JH739658              38113 134 -    691381 I
e falPer1.KB391026            1266701  11 +   1688145 I
e falChe1.KB397934            1269954  11 -   4640569 I
e macEug2.GL124958              26121   0 -     59456 I
e galGal4.chrUn_AADN03023623     2011   0 -      5081 I
e geoFor1.JH740049             182930   0 -   1550430 I
e melGal1.chr7               34310641   0 -  38723565 I
e anaPla1.KB742696            1254472   0 -   1270250 I
e amaVit1.KB277496               6803  35 -     10329 I
e apaSpi1.KB929104              22324   0 +    818693 I
e cheMyd1.KB605988             134509   0 +    155857 I
e chrPic2.chrUn_KK088237v1    1206822   0 +  22294289 I
e pelSin1.JH211051              23303   0 +    476004 I
e melUnd1.JH556589            7674127 5368 -   7952740 I
e taeGut2.chr28               3062068   0 +   4963201 I

a score=141289.000000
s hg38.chr8_KI270814v1_alt     119892 22 +    141812 -------TTCAAAATGTGCTATTAATTTG
s panTro4.chr8               55022378 22 + 143986469 -------TTCAAAATGTGCTATTAATTTG
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8               59162967 22 + 153482349 -------TTCAAAATGTGCTATTAATTTC
i ponAbe2.chr8               C 0 C 0
s nomLeu3.chr18              81377887 22 - 104879549 -------ttcaaaatgtgctattaatttt
i nomLeu3.chr18              C 0 I 660
s rheMac3.chr8               61689934 22 + 150158102 -------atcaaaatgtgctattaatttc
i rheMac3.chr8               C 0 C 0
s macFas5.chr8               58363762 22 + 146850525 -------ATCAAAATGTGCTATTAATTTC
i macFas5.chr8               C 0 C 0
s chlSab2.chr8               53284294 22 + 139301422 -------ATCAAAATGTGTTATTAATTTC
i chlSab2.chr8               C 0 C 0
s calJac3.chr7               33671828 22 + 155834243 -------ATGAAAATGTGCTATTAATGTG
i calJac3.chr7               C 0 I 311
s saiBol1.JH378196            4059045 21 +   9144518 -------AC-AAAATGTGCTATTAGTTTC
i saiBol1.JH378196           C 0 C 0
s otoGar3.GL873762            1558707 22 -   1847653 -------atcaaaatagattattcactcc
i otoGar3.GL873762           C 0 C 0
s vicPac2.KB632521            1177217 22 -   7152218 -------ACGAAAATGTGCTGTAAATTTC
i vicPac2.KB632521           I 8 C 0
s camFer1.KB018161               5799 22 -     34802 -------ATGAAAATGTGCTGTAAATTTC
i camFer1.KB018161           I 8 C 0
s orcOrc1.KB316915            2905852 22 -  11690531 -------ATCAAAATGTGCTGTAAGTTCC
i orcOrc1.KB316915           I 8 C 0
s equCab2.chr29              10870199 19 +  33672925 -------TCCCAAATATGCCACTAAA---
i equCab2.chr29              N 0 C 0
s cerSim1.JH767738            9902490 19 +  34209287 -------ATCCAAATGTGCCGCCATG---
i cerSim1.JH767738           I 8 C 0
s pteAle1.KB031146            3117074 22 -   3193751 -------ATGAATATGTACTATAAATTTC
i pteAle1.KB031146           I 7 C 0
s myoLuc2.GL429990             231883 22 -   2104649 -------atcaacatgtgctataaatttc
i myoLuc2.GL429990           I 8 C 0
s loxAfr3.scaffold_15        39447466 29 -  55688157 TTCTGCATATCAGATATGCTATATATTTT
i loxAfr3.scaffold_15        C 0 C 0
s triMan1.JH594766              14058 29 +   6345240 TTTTACATATCAAATGTGCTATAAATTTT
i triMan1.JH594766           C 0 C 0
e danRer10.chr19             48218196 5198 -  48790377 I
e ornAna1.Contig16971            8823  0 -     13060 I
e tetNig2.chr10               6379385  0 +  13272281 I
e punNye1.JH419232            4767720 338 +   5065651 T
e mayZeb1.JH720522             609382  0 -   6649201 I
e hapBur1.JH425491             252157  0 -   1273513 I
e neoBri1.JH422308            3491820  0 -   5414369 I
e araMac1.AOUJ01470298            637  0 -       895 I
e takFla1.KE121866             209731  0 +    220559 I
e fr3.chr10                   9064512  0 +   9126174 I
e ficAlb2.chr4A              19371809  0 +  21182716 I
e anoCar2.chrUn_GL344195        39255 4204 +     59083 I
e pseHum1.KB221209           10759694 18 +  11841479 I
e zonAlb1.KB913045           12575724 5731 +  16390125 I
e colLiv1.KB375822            2439586 31 +   2691611 I
e allMis1.JH739658              38113 134 -    691381 I
e falPer1.KB391026            1266701 11 +   1688145 I
e falChe1.KB397934            1269954 11 -   4640569 I
e macEug2.GL124958              26121  0 -     59456 I
e galGal4.chrUn_AADN03023623     2011  0 -      5081 I
e geoFor1.JH740049             182930  0 -   1550430 I
e melGal1.chr7               34310641  0 -  38723565 I
e anaPla1.KB742696            1254472  0 -   1270250 I
e amaVit1.KB277496               6803 35 -     10329 I
e apaSpi1.KB929104              22324  0 +    818693 I
e cheMyd1.KB605988             134509  0 +    155857 I
e chrPic2.chrUn_KK088237v1    1206822  0 +  22294289 I
e pelSin1.JH211051              23303  0 +    476004 I
e melUnd1.JH556589            7674127 5368 -   7952740 I
e taeGut2.chr28               3062068  0 +   4963201 I

a score=459217.000000
s hg38.chr8_KI270814v1_alt     119914 62 +    141812 CATAAA----TA----GTTTGCTAACAGCTGAAAAGATAGATAAATGAATGCAAGAGAATAGAAAATCCA
s panTro4.chr8               55022400 62 + 143986469 CATAAA----TA----GTTTGCTAACAGCTGAAAAGATAGATAAATCAATGCAAGAGAATATAAAATCCA
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8               59162989 62 + 153482349 CATaaa----ta----gtttgctaacagctgaaaagatagataaatgaatgcaagagaatagaaaatcca
i ponAbe2.chr8               C 0 C 0
s nomLeu3.chr18              81378569 62 - 104879549 cacaaa----tt----ctttgataacagctgaaaagacaggtaaatgaatacaacaaaatacaaaatcca
i nomLeu3.chr18              I 660 C 0
s rheMac3.chr8               61689956 62 + 150158102 cacaaa----ta----gtttgctaacaactgaaaagatagataaatgaatgcaagagaatagaaaatcca
i rheMac3.chr8               C 0 C 0
s macFas5.chr8               58363784 62 + 146850525 CACAAA----TA----GTTTGCTAACAACTGAAAAGATAGATAAATGAATGCAAGAGAATAGAAAATCCA
i macFas5.chr8               C 0 C 0
s chlSab2.chr8               53284316 61 + 139301422 CACAAA----TA----GTTTGCTAACAACTGAAAAGATAGATAAATGAATGTAAGAGAATAG-AAATCCA
i chlSab2.chr8               C 0 C 0
s calJac3.chr7               33672161 62 + 155834243 CACAAA----TT----GTTTGCTAACAGCTCAAAACACAGGTACATGAATCCAACAGAACACAAAATCCA
i calJac3.chr7               I 311 C 0
s saiBol1.JH378196            4059066 58 +   9144518 CACAAA----TT----AT----GAATAGCTGAAAAGACGGATAAATGAATGAAACAGAATAGAAGATCTA
i saiBol1.JH378196           C 0 I 302
s otoGar3.GL873762            1558729 63 -   1847653 cacaaa----ttaatcatttattaaca---gagaaaaaaaataagtgaatggaacagaatagaaaatcca
i otoGar3.GL873762           C 0 C 0
s vicPac2.KB632521            1177239 61 -   7152218 CACAAATTATTC----ATTTACTAACAAACGGAAAGACAGATTTATGAATGGAAC-----AGAAAATGCC
i vicPac2.KB632521           C 0 C 0
s camFer1.KB018161               5821 61 -     34802 CACAAATTATTC----ATTTACTAACAACTGGAAAGACAGATTGATGAATGGAAC-----AGAAAATGCC
i camFer1.KB018161           C 0 C 0
s orcOrc1.KB316915            2905874 66 -  11690531 CACAAATTATTC----GTTTACTAACAACTGAAAagacagataagtgaatggaacagaatagaaaatgcc
i orcOrc1.KB316915           C 0 C 0
s equCab2.chr29              10870218 46 +  33672925 ----------TT----ATTTAATAACAGCTgaaaagaaagataaat----------aaatagaacatgcc
i equCab2.chr29              C 0 C 0
s cerSim1.JH767738            9902509 52 +  34209287 ----------TT----GTTTACTAACAGCTggaaagataaataaat----ggaacagaatagaaaatgtc
i cerSim1.JH767738           C 0 C 0
s pteAle1.KB031146            3117096 65 -   3193751 CACTACTTA-TA----ATTTACAAATAGCTGAAAAGACAGATAAATTATTGGAACAGAACAGAAAATGCC
i pteAle1.KB031146           C 0 C 0
s myoLuc2.GL429990             231905 63 -   2104649 cacaagttattt----gtctatcaatagctgagaagacag--aaatgattagaacaaattag-aaatgtc
i myoLuc2.GL429990           C 0 C 0
s loxAfr3.scaffold_15        39447495 62 -  55688157 CACAAA----TT----GTTTACTAGCAACCAAatagacagataaatgagtgcaacagaatagaaaagcca
i loxAfr3.scaffold_15        C 0 C 0
s triMan1.JH594766              14087 62 +   6345240 CACAAA----TT----GTTtactaacatccaaatagacacataaatgaatggaacagaatagaaaaccca
i triMan1.JH594766           C 0 C 0
e danRer10.chr19             48218196 5198 -  48790377 I
e ornAna1.Contig16971            8823  0 -     13060 I
e tetNig2.chr10               6379385  0 +  13272281 I
e punNye1.JH419232            4767720 338 +   5065651 T
e mayZeb1.JH720522             609382  0 -   6649201 I
e hapBur1.JH425491             252157  0 -   1273513 I
e neoBri1.JH422308            3491820  0 -   5414369 I
e araMac1.AOUJ01470298            637  0 -       895 I
e takFla1.KE121866             209731  0 +    220559 I
e fr3.chr10                   9064512  0 +   9126174 I
e ficAlb2.chr4A              19371809  0 +  21182716 I
e anoCar2.chrUn_GL344195        39255 4204 +     59083 I
e pseHum1.KB221209           10759694 18 +  11841479 I
e zonAlb1.KB913045           12575724 5731 +  16390125 I
e colLiv1.KB375822            2439586 31 +   2691611 I
e allMis1.JH739658              38113 134 -    691381 I
e falPer1.KB391026            1266701 11 +   1688145 I
e falChe1.KB397934            1269954 11 -   4640569 I
e macEug2.GL124958              26121  0 -     59456 I
e galGal4.chrUn_AADN03023623     2011  0 -      5081 I
e geoFor1.JH740049             182930  0 -   1550430 I
e melGal1.chr7               34310641  0 -  38723565 I
e anaPla1.KB742696            1254472  0 -   1270250 I
e amaVit1.KB277496               6803 35 -     10329 I
e apaSpi1.KB929104              22324  0 +    818693 I
e cheMyd1.KB605988             134509  0 +    155857 I
e chrPic2.chrUn_KK088237v1    1206822  0 +  22294289 I
e pelSin1.JH211051              23303  0 +    476004 I
e melUnd1.JH556589            7674127 5368 -   7952740 I
e taeGut2.chr28               3062068  0 +   4963201 I

a score=250323.000000
s hg38.chr8_KI270814v1_alt     119976 39 +    141812 GGAACACCCAAA----TATATGT-AAGAACGTATAACAGGGTAA
s panTro4.chr8               55022462 39 + 143986469 GGAACACCCAAA----TATATGT-AAGAATGTATAACAGGGTAA
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8               59163051 39 + 153482349 ggaacacccaaa----tatatgt-aagaatgtataacagggtaa
i ponAbe2.chr8               C 0 C 0
s nomLeu3.chr18              81378631 37 - 104879549 gaaacacccaaa----tatc--t-aagaatttagaacttgataa
i nomLeu3.chr18              C 0 C 0
s rheMac3.chr8               61690018 39 + 150158102 ggaacacccaag----tataggt-aagaatctgtaacatggtaa
i rheMac3.chr8               C 0 C 0
s macFas5.chr8               58363846 39 + 146850525 GGAACACCCAAG----TATAGGT-AAGAATCTGTAACATGGTAA
i macFas5.chr8               C 0 C 0
s chlSab2.chr8               53284377 39 + 139301422 GAAACACCCAAG----TATAGGT-AAGAATCTGTAACATGGTAA
i chlSab2.chr8               C 0 C 0
s calJac3.chr7               33672223 12 + 155834243 --------TAAA----CACCTAT-A-------------------
i calJac3.chr7               C 0 C 0
s saiBol1.JH378196            4059426 39 +   9144518 gaaTTGCCCAAA----TACATAT-AAGCATTTGGAGCTTGATAA
i saiBol1.JH378196           I 302 C 0
s otoGar3.GL873762            1558792 38 -   1847653 gaaacacctaga----tatatgt-aaaaatttagaacttt-taa
i otoGar3.GL873762           C 0 C 0
s vicPac2.KB632521            1177300 39 -   7152218 CAAACACCCAAA----TATATGT-AAGACTTTAGAACTTGTTAC
i vicPac2.KB632521           C 0 C 0
s camFer1.KB018161               5882 39 -     34802 CAAACATCCAAA----TATATGT-AAGACTTTAGAACTTGTTAC
i camFer1.KB018161           C 0 C 0
s orcOrc1.KB316915            2905940 38 -  11690531 caaacacccaaa----tatatgt-aagactttagaacttg-aac
i orcOrc1.KB316915           C 0 C 0
s equCab2.chr29              10870264 43 +  33672925 caaaaacccaaatacgtatttgt-aagactttagaatttgatac
i equCab2.chr29              C 0 C 0
s cerSim1.JH767738            9902561 43 +  34209287 caaacacccgaatacgtatatgt-aagactttagaacttgatac
i cerSim1.JH767738           C 0 C 0
s pteAle1.KB031146            3117161 39 -   3193751 CAAACACCCAAA----TATATGT-AGGACTTTAGAACTTGATAC
i pteAle1.KB031146           C 0 C 0
s myoLuc2.GL429990             231968 40 -   2104649 taaacacccaaa----tgtttgtaagaactttagaacttgatac
i myoLuc2.GL429990           C 0 C 0
s loxAfr3.scaffold_15        39447557 39 -  55688157 gaaacattcaaa----tgtatgt-aaggagttaggacttgatac
i loxAfr3.scaffold_15        C 0 C 0
s triMan1.JH594766              14149 35 +   6345240 gaaa----caaa----tacatgt-aagaatttagaacttagtac
i triMan1.JH594766           C 0 C 0
e danRer10.chr19             48218196 5198 -  48790377 I
e ornAna1.Contig16971            8823  0 -     13060 I
e tetNig2.chr10               6379385  0 +  13272281 I
e punNye1.JH419232            4767720 338 +   5065651 T
e mayZeb1.JH720522             609382  0 -   6649201 I
e hapBur1.JH425491             252157  0 -   1273513 I
e neoBri1.JH422308            3491820  0 -   5414369 I
e araMac1.AOUJ01470298            637  0 -       895 I
e takFla1.KE121866             209731  0 +    220559 I
e fr3.chr10                   9064512  0 +   9126174 I
e ficAlb2.chr4A              19371809  0 +  21182716 I
e anoCar2.chrUn_GL344195        39255 4204 +     59083 I
e pseHum1.KB221209           10759694 18 +  11841479 I
e zonAlb1.KB913045           12575724 5731 +  16390125 I
e colLiv1.KB375822            2439586 31 +   2691611 I
e allMis1.JH739658              38113 134 -    691381 I
e falPer1.KB391026            1266701 11 +   1688145 I
e falChe1.KB397934            1269954 11 -   4640569 I
e macEug2.GL124958              26121  0 -     59456 I
e galGal4.chrUn_AADN03023623     2011  0 -      5081 I
e geoFor1.JH740049             182930  0 -   1550430 I
e melGal1.chr7               34310641  0 -  38723565 I
e anaPla1.KB742696            1254472  0 -   1270250 I
e amaVit1.KB277496               6803 35 -     10329 I
e apaSpi1.KB929104              22324  0 +    818693 I
e cheMyd1.KB605988             134509  0 +    155857 I
e chrPic2.chrUn_KK088237v1    1206822  0 +  22294289 I
e pelSin1.JH211051              23303  0 +    476004 I
e melUnd1.JH556589            7674127 5368 -   7952740 I
e taeGut2.chr28               3062068  0 +   4963201 I

a score=151059.000000
s hg38.chr8_KI270814v1_alt     120015 37 +    141812 TGGTGAGACTTTATACTAATA-AG----------AAAAGAGTTATT-TT
s panTro4.chr8               55022501 37 + 143986469 CGGTGAGACTTTATACTAGTA-AG----------AAAAGAGTTATT-TT
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8               59163090 37 + 153482349 tggtgagactttatactagta-ag----------aaaagagttatt-tt
i ponAbe2.chr8               C 0 C 0
s nomLeu3.chr18              81378668 37 - 104879549 ttctcacactttatactagca-gg----------gaaagaattagt-tt
i nomLeu3.chr18              C 0 C 0
s rheMac3.chr8               61690057 37 + 150158102 tggcgagactttatactagta-gg----------aaaagagttatt-tt
i rheMac3.chr8               C 0 C 0
s macFas5.chr8               58363885 37 + 146850525 TGGCGAGACTTTATACTAGTA-GG----------AAAAGAGTTATT-TT
i macFas5.chr8               C 0 C 0
s chlSab2.chr8               53284416 47 + 139301422 TGGCGAGACTTTATGCTAGTA-GGCATAAAAAATAAAATAGTTATT-TT
i chlSab2.chr8               C 0 C 0
s saiBol1.JH378196            4059465 37 +   9144518 TGGTGACATTTCAGATTAGTA-GG----------AAAAGGTGAATT-AT
i saiBol1.JH378196           C 0 C 0
s otoGar3.GL873762            1558830 38 -   1847653 tgatgacatttcatatttgta-gg----------aaaagatgaattatt
i otoGar3.GL873762           C 0 C 0
s orcOrc1.KB316915            2905978 38 -  11690531 tgatgacatttcatattagaa-gg----------aaaaaataaattgtt
i orcOrc1.KB316915           C 0 C 0
s equCab2.chr29              10870307 38 +  33672925 tggtgatgtttcgtattcgta-cg----------aaaggatgagttatt
i equCab2.chr29              C 0 C 0
s cerSim1.JH767738            9902604 38 +  34209287 tggtgacatttcatattagta-gg----------aaaaggtgaattttt
i cerSim1.JH767738           C 0 C 0
s pteAle1.KB031146            3117200 16 -   3193751 TTGTGACATTTCATGC---------------------------------
i pteAle1.KB031146           C 0 C 0
s myoLuc2.GL429990             232008 38 -   2104649 tggtgacatttcatgtttgta-gg----------aaaagatgacttact
i myoLuc2.GL429990           C 0 C 0
s loxAfr3.scaffold_15        39447596 39 -  55688157 tggtgacatttcatattagtacgg----------aaaagataaattatt
i loxAfr3.scaffold_15        C 0 C 0
s triMan1.JH594766              14184 39 +   6345240 tgaggacatttcatattagtaggg----------aaaagatgaattatt
i triMan1.JH594766           C 0 C 0
e vicPac2.KB632521            1177339  0 -   7152218 C
e camFer1.KB018161               5921  0 -     34802 C
e danRer10.chr19             48218196 5198 -  48790377 I
e ornAna1.Contig16971            8823  0 -     13060 I
e tetNig2.chr10               6379385  0 +  13272281 I
e punNye1.JH419232            4767720 338 +   5065651 T
e mayZeb1.JH720522             609382  0 -   6649201 I
e hapBur1.JH425491             252157  0 -   1273513 I
e neoBri1.JH422308            3491820  0 -   5414369 I
e araMac1.AOUJ01470298            637  0 -       895 I
e takFla1.KE121866             209731  0 +    220559 I
e fr3.chr10                   9064512  0 +   9126174 I
e ficAlb2.chr4A              19371809  0 +  21182716 I
e anoCar2.chrUn_GL344195        39255 4204 +     59083 I
e pseHum1.KB221209           10759694 18 +  11841479 I
e zonAlb1.KB913045           12575724 5731 +  16390125 I
e colLiv1.KB375822            2439586 31 +   2691611 I
e allMis1.JH739658              38113 134 -    691381 I
e falPer1.KB391026            1266701 11 +   1688145 I
e falChe1.KB397934            1269954 11 -   4640569 I
e macEug2.GL124958              26121  0 -     59456 I
e galGal4.chrUn_AADN03023623     2011  0 -      5081 I
e geoFor1.JH740049             182930  0 -   1550430 I
e melGal1.chr7               34310641  0 -  38723565 I
e anaPla1.KB742696            1254472  0 -   1270250 I
e amaVit1.KB277496               6803 35 -     10329 I
e apaSpi1.KB929104              22324  0 +    818693 I
e cheMyd1.KB605988             134509  0 +    155857 I
e chrPic2.chrUn_KK088237v1    1206822  0 +  22294289 I
e pelSin1.JH211051              23303  0 +    476004 I
e calJac3.chr7               33672235  0 + 155834243 C
e melUnd1.JH556589            7674127 5368 -   7952740 I
e taeGut2.chr28               3062068  0 +   4963201 I

a score=305701.000000
s hg38.chr8_KI270814v1_alt     120052 65 +    141812 TA-TAAATG-----------AAATGCCTGCT---TTTTGGAAGAAACT-AGCTAGATTTTTATGTCACAAAAATAAGTTTC
s panTro4.chr8               55022538 65 + 143986469 TA-TAAATG-----------AAATGCCTGCT---TTTTGGAAGAAACT-AGCTAGATTTTTATGTCACAAAAATAAGTTTC
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8               59163127 65 + 153482349 ta-taaatg-----------AAATGCCTGCT---TTTTGGAAGAAATT-AGCTAGATTTTTATGTCACAACAATAAGTTTC
i ponAbe2.chr8               C 0 C 0
s nomLeu3.chr18              81378705 60 - 104879549 ca-taagtg-----------aaatgcctgct---ttttggagaaaa-----ctagatttttatgccataa-agtaaatttc
i nomLeu3.chr18              C 0 C 0
s rheMac3.chr8               61690094 65 + 150158102 ta-taaatg-----------aaatgcctgct---ttttggaagaaact-agctagatttttatgtcacaaaaataagttcc
i rheMac3.chr8               C 0 C 0
s macFas5.chr8               58363922 65 + 146850525 TA-TAAATG-----------AAATGCCTGCT---TTTTGGAAGAAACT-AGCTAGATTTTTATGTCACAAAAATAAGTTCC
i macFas5.chr8               C 0 C 0
s chlSab2.chr8               53284463 65 + 139301422 TA-TAAATG-----------AAATGCCTGCT---TTTTGGAAGAAACT-AGCTAGATTTTTATGTCACAAAAATAAGTTCC
i chlSab2.chr8               C 0 C 0
s calJac3.chr7               33672235 58 + 155834243 ---TATATG-----------AAATGATGGCC---CTTTGGAGAA-----AACTAGATGTTTATGCCACA-AAATAAGTTCG
i calJac3.chr7               C 0 C 0
s saiBol1.JH378196            4059502 67 +   9144518 TCGTAAATT-----------ACATGTCTGCT---GTTTGGATAAAACTTAACTAGAGTTTTATGTCACAGAAATAAATTCC
i saiBol1.JH378196           C 0 C 0
s otoGar3.GL873762            1558868 65 -   1847653 tg-taaatg-----------aaatgcttattaacgtttagagaaa----acctagatttttatatcacaaaaataagttct
i otoGar3.GL873762           C 0 C 0
s orcOrc1.KB316915            2906016 76 -  11690531 tg-taaatggtggagaagtaaactgctaact---atttagagaaaagt-aactagatttttatctcacaaaaataagttcc
i orcOrc1.KB316915           C 0 C 0
s equCab2.chr29              10870345 75 +  33672925 ca-caaatggtggagaaat-acctgctaact---ctttggagaagatt-agctagatttttatctcacaaaaataagttcc
i equCab2.chr29              C 0 C 0
s cerSim1.JH767738            9902642 75 +  34209287 ca-tggatggtggagaaat-acctgccaggt---atttggagaaaact-agtgagatttttatctcacaaaaataagttcc
i cerSim1.JH767738           C 0 C 0
s pteAle1.KB031146            3117216 32 -   3193751 ----------------------CTTTTATAC---ATTT-------------------TTTTATGTTCTCAAA-----TTCT
i pteAle1.KB031146           C 0 C 0
s myoLuc2.GL429990             232046 74 -   2104649 ca-taaatggttgcgaaat-aattgttaagt---atttggagaaaact-agctaga-ttttatttcagaaaaataagttcc
i myoLuc2.GL429990           C 0 C 0
s loxAfr3.scaffold_15        39447635 48 -  55688157 ca-taaatggtgGAT-----AAATGCCTGCT---ATTTGGAGAAAACG-AGC-----------------------AGTTCC
i loxAfr3.scaffold_15        C 0 C 0
s triMan1.JH594766              14223 68 +   6345240 ca-taaatggtggag-----aattgcctgct---ttttggagaaaact-agcta---tattatctcacaaaaataagttcc
i triMan1.JH594766           C 0 C 0
s melGal1.chr1               24924352 65 + 204065131 TA-AAAAGG-----------AATTATTTGTT---TTTAACAGGAATTA-ATTAAAAATATTCTTTAAAAGGAGTATATTCT
i melGal1.chr1               T 4997 C 0
e vicPac2.KB632521            1177339  0 -   7152218 C
e camFer1.KB018161               5921  0 -     34802 C
e danRer10.chr19             48218196 5198 -  48790377 I
e ornAna1.Contig16971            8823  0 -     13060 I
e tetNig2.chr10               6379385  0 +  13272281 I
e punNye1.JH419232            4767720 338 +   5065651 T
e mayZeb1.JH720522             609382  0 -   6649201 I
e hapBur1.JH425491             252157  0 -   1273513 I
e neoBri1.JH422308            3491820  0 -   5414369 I
e araMac1.AOUJ01470298            637  0 -       895 I
e takFla1.KE121866             209731  0 +    220559 I
e fr3.chr10                   9064512  0 +   9126174 I
e ficAlb2.chr4A              19371809  0 +  21182716 I
e anoCar2.chrUn_GL344195        39255 4204 +     59083 I
e pseHum1.KB221209           10759694 18 +  11841479 I
e zonAlb1.KB913045           12575724 5731 +  16390125 I
e colLiv1.KB375822            2439586 31 +   2691611 I
e allMis1.JH739658              38113 134 -    691381 I
e falPer1.KB391026            1266701 11 +   1688145 I
e falChe1.KB397934            1269954 11 -   4640569 I
e macEug2.GL124958              26121  0 -     59456 I
e galGal4.chrUn_AADN03023623     2011  0 -      5081 I
e geoFor1.JH740049             182930  0 -   1550430 I
e anaPla1.KB742696            1254472  0 -   1270250 I
e amaVit1.KB277496               6803 35 -     10329 I
e apaSpi1.KB929104              22324  0 +    818693 I
e cheMyd1.KB605988             134509  0 +    155857 I
e chrPic2.chrUn_KK088237v1    1206822  0 +  22294289 I
e pelSin1.JH211051              23303  0 +    476004 I
e melUnd1.JH556589            7674127 5368 -   7952740 I
e taeGut2.chr28               3062068  0 +   4963201 I

a score=43862.000000
s hg38.chr8_KI270814v1_alt       120117 11 +    141812 TCATTGAATAT
s panTro4.chr8                 55022603 11 + 143986469 TCATTGAATAT
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59163192 11 + 153482349 TCATTGAATAT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                81378765 11 - 104879549 tgatggaatat
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                 61690159 11 + 150158102 tcattgaatat
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                 58363987 11 + 146850525 TCATTGAATAT
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                 53284528 11 + 139301422 TCATTGAATAT
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                 33672293 11 + 155834243 TGATGGAATAT
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196              4059569 11 +   9144518 TGATGAAAAAT
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762              1558933 11 -   1847653 tgatggaatat
i otoGar3.GL873762             C 0 C 0
s orcOrc1.KB316915              2906092 11 -  11690531 agatggagtac
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                10870420 11 +  33672925 agatagaacac
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738              9902717 11 +  34209287 agacagagcac
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146              3117248  2 -   3193751 GG---------
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990               232120 11 -   2104649 agatggaatat
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15          39447683 11 -  55688157 AGATGGAATGT
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                14291 11 +   6345240 agatggaatat
i triMan1.JH594766             C 0 C 0
s sarHar1.chr5_GL861647_random   424011 11 -   4230514 tcacttaaccc
i sarHar1.chr5_GL861647_random N 0 C 0
s melGal1.chr1                 24924417 11 + 204065131 AAATCATCCAT
i melGal1.chr1                 C 0 C 0
e vicPac2.KB632521              1177339  0 -   7152218 C
e camFer1.KB018161                 5921  0 -     34802 C
e danRer10.chr19               48218196 5198 -  48790377 I
e ornAna1.Contig16971              8823  0 -     13060 I
e tetNig2.chr10                 6379385  0 +  13272281 I
e punNye1.JH419232              4767720 338 +   5065651 T
e mayZeb1.JH720522               609382  0 -   6649201 I
e hapBur1.JH425491               252157  0 -   1273513 I
e neoBri1.JH422308              3491820  0 -   5414369 I
e araMac1.AOUJ01470298              637  0 -       895 I
e takFla1.KE121866               209731  0 +    220559 I
e fr3.chr10                     9064512  0 +   9126174 I
e ficAlb2.chr4A                19371809  0 +  21182716 I
e anoCar2.chrUn_GL344195          39255 4204 +     59083 I
e pseHum1.KB221209             10759694 18 +  11841479 I
e zonAlb1.KB913045             12575724 5731 +  16390125 I
e colLiv1.KB375822              2439586 31 +   2691611 I
e allMis1.JH739658                38113 134 -    691381 I
e falPer1.KB391026              1266701 11 +   1688145 I
e falChe1.KB397934              1269954 11 -   4640569 I
e macEug2.GL124958                26121  0 -     59456 I
e galGal4.chrUn_AADN03023623       2011  0 -      5081 I
e geoFor1.JH740049               182930  0 -   1550430 I
e anaPla1.KB742696              1254472  0 -   1270250 I
e amaVit1.KB277496                 6803 35 -     10329 I
e apaSpi1.KB929104                22324  0 +    818693 I
e cheMyd1.KB605988               134509  0 +    155857 I
e chrPic2.chrUn_KK088237v1      1206822  0 +  22294289 I
e pelSin1.JH211051                23303  0 +    476004 I
e melUnd1.JH556589              7674127 5368 -   7952740 I
e taeGut2.chr28                 3062068  0 +   4963201 I

a score=49499.000000
s hg38.chr8_KI270814v1_alt       120128 13 +    141812 -----AGATTA-----TTTTAAA
s panTro4.chr8                 55022614 13 + 143986469 -----AGATTA-----TTTTAAA
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59163203 13 + 153482349 -----AGATTA-----TTTTAAA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                81378776 17 - 104879549 -----agattaaa-tttttttaa
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                 61690170 13 + 150158102 -----agatta-----ttttaaa
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                 58363998 13 + 146850525 -----AAATTA-----TTTTAAA
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                 53284539 13 + 139301422 -----AGATTA-----TTTTAAA
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                 33672304 17 + 155834243 -----ATATTAAA-AGGTATTAA
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196              4059580 17 +   9144518 -----AGATCAAA-CATTTTAAA
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762              1558944 17 -   1847653 -----agattaaa-aattttcaa
i otoGar3.GL873762             C 0 C 0
s orcOrc1.KB316915              2906103 17 -  11690531 -----agatcaaa-aattttaaa
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                10870431 17 +  33672925 -----agattaaa-aattttaaa
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738              9902728 17 +  34209287 -----agattaaa-aATTTTAGA
i cerSim1.JH767738             C 0 I 157
s pteAle1.KB031146              3117250 18 -   3193751 -----AGATTGAGCAATGTAAAA
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990               232131 16 -   2104649 -----agattaa--aatttcaaa
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15          39447694 18 -  55688157 -----AGATTAAGATTTTTTAAA
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                14302 18 +   6345240 -----agaTTAAGATTTTTTTAA
i triMan1.JH594766             C 0 C 0
s sarHar1.chr5_GL861647_random   424022 13 -   4230514 -----caatta-----cctcaga
i sarHar1.chr5_GL861647_random C 0 I 5
s ornAna1.Ultra479              3864659 13 -   6008416 -----AAGTTA-----TTTTCAA
i ornAna1.Ultra479             T 7152 C 0
s melGal1.chr1                 24924428 13 + 204065131 CTAAAAGATTAAA----------
i melGal1.chr1                 C 0 C 0
e vicPac2.KB632521              1177339  0 -   7152218 C
e camFer1.KB018161                 5921  0 -     34802 C
e danRer10.chr19               48218196 5198 -  48790377 I
e tetNig2.chr10                 6379385  0 +  13272281 I
e punNye1.JH419232              4767720 338 +   5065651 T
e mayZeb1.JH720522               609382  0 -   6649201 I
e hapBur1.JH425491               252157  0 -   1273513 I
e neoBri1.JH422308              3491820  0 -   5414369 I
e araMac1.AOUJ01470298              637  0 -       895 I
e takFla1.KE121866               209731  0 +    220559 I
e fr3.chr10                     9064512  0 +   9126174 I
e ficAlb2.chr4A                19371809  0 +  21182716 I
e anoCar2.chrUn_GL344195          39255 4204 +     59083 I
e pseHum1.KB221209             10759694 18 +  11841479 I
e zonAlb1.KB913045             12575724 5731 +  16390125 I
e colLiv1.KB375822              2439586 31 +   2691611 I
e allMis1.JH739658                38113 134 -    691381 I
e falPer1.KB391026              1266701 11 +   1688145 I
e falChe1.KB397934              1269954 11 -   4640569 I
e macEug2.GL124958                26121  0 -     59456 I
e galGal4.chrUn_AADN03023623       2011  0 -      5081 I
e geoFor1.JH740049               182930  0 -   1550430 I
e anaPla1.KB742696              1254472  0 -   1270250 I
e amaVit1.KB277496                 6803 35 -     10329 I
e apaSpi1.KB929104                22324  0 +    818693 I
e cheMyd1.KB605988               134509  0 +    155857 I
e chrPic2.chrUn_KK088237v1      1206822  0 +  22294289 I
e pelSin1.JH211051                23303  0 +    476004 I
e melUnd1.JH556589              7674127 5368 -   7952740 I
e taeGut2.chr28                 3062068  0 +   4963201 I

a score=265986.000000
s hg38.chr8_KI270814v1_alt       120141 91 +    141812 ---------TATGCAAAATGAGAAAAATACCAGAAGAA----AACGCAAAT-GCCTATTTATACAAATACATTTTTG-----TGTTGACAAAG-------ACCTTCCTAGG---AACCTC
s panTro4.chr8                 55022627 91 + 143986469 ---------TATGCAAAATGAGAAAAATACCAGAAGAA----AACGCAAAT-GCCTATTTATACAAATACAATTTTG-----TGTTGACAAAG-------ACCTTCCTAGG---AACCTC
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59163216 91 + 153482349 ---------TATGCAAAATCAGAAAAATACCAGAAGAA----AACACATAT-GCCTATTTATACAAATACATTTTTG-----TGTTGACAAAG-------ACCTTCCTAGG---AACCTC
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                81378793 90 - 104879549 ---------tatacaaaatgataaaagcaccagaagaa----aacataagT-GCCTATTTACACAGGTACATTTTTA-----TGTTGACAAC--------ACCTTTCTAAG---AAGCTC
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                 61690183 91 + 150158102 ---------tatgcaaaatgagaaaaataccagaagaa----aacacaaat-gcctatttgtacagatacatttttg-----tgttgacaaag-------atcttcctaGG---AACTTC
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                 58364011 91 + 146850525 ---------TATGCAAAATGAGAAAAATACCAGAAGAA----AACACAAAT-GCCTATTTATACAGATACATTTTTG-----TGTTGACAAAG-------ATCTTCCTAGG---AACTTC
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                 53284552 91 + 139301422 ---------TATGCAAAATGAGAAAAATACCAGGAGAA----AACACAAAT-GCCTATTTATACAGATACATTTTTG-----TGTTGACAAAG-------ATCTTCCTAGG---AACTTC
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                 33672321 83 + 155834243 ---------TATACAAACTGAGAGAAGTACCAGAAGAA----AACATAAAT-GCCTATTTACACAGGTAccttttta-----tgttgacaa---------------ctaag---aagctg
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196              4059597 90 +   9144518 ---------TATGCAAAATAGGGAAAGTACCAAAAGAA----GACACACAT-GCGTATTTCTACAAATACCTTTTTA-----TGTTGACAAA--------ACCTTCCTAAG---AACTTC
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762              1558961 89 -   1847653 ---------catacaaaatgagaaatgtaccagaagaa----aacacaaat-gcctatttatacaggtacattttta-----caatgacaaag-------accttcctaag---g--ttg
i otoGar3.GL873762             C 0 C 0
s orcOrc1.KB316915              2906120 88 -  11690531 ---------tattcaaagtgagaaaacgactagaagaa----aaca-aaat-tcctatttataca-----ttttttg-----tgctgacaaag-------accttcctaagaatgacttc
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                10870448 87 +  33672925 ---------tatacaaagtgagaaaaatactagaagaa----aacacaaat-gcctatttataca------tttttg-----tgttgacaaag-------acc-ttctgagattgacttc
i equCab2.chr29                C 0 C 0
s pteAle1.KB031146              3117268 29 -   3193751 ---------AATTAAAACTCTG-----TATCAAAAGAT----AATAT-------------------------------------------------------------------------
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990               232147 73 -   2104649 ---------tatacaaaatatgaaaattaccagaagaa----aacataaat-gcctatatacaga------tatata-----tatatatata-------------tgtgtg---------
i myoLuc2.GL429990             C 0 I 20
s loxAfr3.scaffold_15          39447712 83 -  55688157 ---------TATGAAAAATGAGAGAAGTACCAGAAGGC----AGATCGG---GCCTATTTATACA------TTTTTA-----TGGTAACGGAG-------AGCTTTCTTGT---CACCTC
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                14320 84 +   6345240 ---------ATGGAAAAATGAGAGAAGTAGCAGAAGAC----AGATCAA-T-GCCTATTTATACA------TTTTTA-----TGCTAACAAAG-------ACCATTCCAAT---GACCTC
i triMan1.JH594766             C 0 I 190
s sarHar1.chr5_GL861647_random   424040 97 -   4230514 ---------caaaaaagacagaagagataTGGGGTGAT----AACGGGGATAGATTGATCAGGTAAAGATCCTTTGGGGAATTGTGGAGAAGACATGGACATGTTTGTAA----------
i sarHar1.chr5_GL861647_random I 5 C 0
s ornAna1.Ultra479              3864672 64 -   6008416 ---------TAAGCAAAGCAAAAGGAGTGAAATGATAA----AATGCAAAC-----AATAAAACA-ATAAACCCAGG-----AGCTGT--------------------------------
i ornAna1.Ultra479             C 0 C 0
s melGal1.chr1                 24924441 85 + 204065131 TAAATAGTATGAACAAAGGAGGGAAAAAAGATGGAAAAATTGAAGACAACT-GACAACTGGTATAGTAACAGGTTCT-----AGCAGTCTT-----------------------------
i melGal1.chr1                 C 0 C 0
e vicPac2.KB632521              1177339  0 -   7152218 C
e camFer1.KB018161                 5921  0 -     34802 C
e danRer10.chr19               48218196 5198 -  48790377 I
e tetNig2.chr10                 6379385  0 +  13272281 I
e punNye1.JH419232              4767720 338 +   5065651 T
e mayZeb1.JH720522               609382  0 -   6649201 I
e hapBur1.JH425491               252157  0 -   1273513 I
e neoBri1.JH422308              3491820  0 -   5414369 I
e araMac1.AOUJ01470298              637  0 -       895 I
e takFla1.KE121866               209731  0 +    220559 I
e fr3.chr10                     9064512  0 +   9126174 I
e ficAlb2.chr4A                19371809  0 +  21182716 I
e anoCar2.chrUn_GL344195          39255 4204 +     59083 I
e pseHum1.KB221209             10759694 18 +  11841479 I
e zonAlb1.KB913045             12575724 5731 +  16390125 I
e colLiv1.KB375822              2439586 31 +   2691611 I
e allMis1.JH739658                38113 134 -    691381 I
e falPer1.KB391026              1266701 11 +   1688145 I
e falChe1.KB397934              1269954 11 -   4640569 I
e macEug2.GL124958                26121  0 -     59456 I
e galGal4.chrUn_AADN03023623       2011  0 -      5081 I
e geoFor1.JH740049               182930  0 -   1550430 I
e anaPla1.KB742696              1254472  0 -   1270250 I
e amaVit1.KB277496                 6803 35 -     10329 I
e apaSpi1.KB929104                22324  0 +    818693 I
e cheMyd1.KB605988               134509  0 +    155857 I
e chrPic2.chrUn_KK088237v1      1206822  0 +  22294289 I
e pelSin1.JH211051                23303  0 +    476004 I
e melUnd1.JH556589              7674127 5368 -   7952740 I
e taeGut2.chr28                 3062068  0 +   4963201 I
e cerSim1.JH767738              9902745 157 +  34209287 I

a score=53244.000000
s hg38.chr8_KI270814v1_alt       120232 16 +    141812 ------TCAAGCAAGCATTCTG
s panTro4.chr8                 55022718 16 + 143986469 ------TCAAGCAAGCATTCTG
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59163307 16 + 153482349 ------TCAAGCAAGCATTCTG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                81378883 16 - 104879549 ------AGAAGCAAGCAGTCTG
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                 61690274 16 + 150158102 ------CCAAGCAAGCAGTCTG
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                 58364102 16 + 146850525 ------CCAAGCAAGCAGTCTG
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                 53284643 16 + 139301422 ------TCAAGCAAGCATTCTG
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                 33672404 16 + 155834243 ------agaagcaagtactctg
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196              4059687 16 +   9144518 ------ACAAGCAAGCATTCTA
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762              1559050 16 -   1847653 ------atggaaaagcatttca
i otoGar3.GL873762             C 0 C 0
s orcOrc1.KB316915              2906208 16 -  11690531 ------aaaagcaagaattctg
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                10870535 16 +  33672925 ------aaaagcaagagttctt
i equCab2.chr29                C 0 C 0
s loxAfr3.scaffold_15          39447795 15 -  55688157 ------AAAAGCAATTATTCT-
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                14594 16 +   6345240 ------AAAAGCAAGTACTCTG
i triMan1.JH594766             I 190 C 0
s sarHar1.chr5_GL861647_random   424137 16 -   4230514 ------TCAAGCAGGGAAATAG
i sarHar1.chr5_GL861647_random C 0 C 0
s ornAna1.Ultra479              3864736 14 -   6008416 ------CAAGATAACCATGC--
i ornAna1.Ultra479             C 0 C 0
s melGal1.chr1                 24924526 19 + 204065131 TTCAGCAAACAAAAGAATG---
i melGal1.chr1                 C 0 C 0
e myoLuc2.GL429990               232220 20 -   2104649 I
e vicPac2.KB632521              1177339  0 -   7152218 C
e camFer1.KB018161                 5921  0 -     34802 C
e danRer10.chr19               48218196 5198 -  48790377 I
e tetNig2.chr10                 6379385  0 +  13272281 I
e punNye1.JH419232              4767720 338 +   5065651 T
e mayZeb1.JH720522               609382  0 -   6649201 I
e hapBur1.JH425491               252157  0 -   1273513 I
e neoBri1.JH422308              3491820  0 -   5414369 I
e araMac1.AOUJ01470298              637  0 -       895 I
e takFla1.KE121866               209731  0 +    220559 I
e fr3.chr10                     9064512  0 +   9126174 I
e ficAlb2.chr4A                19371809  0 +  21182716 I
e anoCar2.chrUn_GL344195          39255 4204 +     59083 I
e pseHum1.KB221209             10759694 18 +  11841479 I
e zonAlb1.KB913045             12575724 5731 +  16390125 I
e colLiv1.KB375822              2439586 31 +   2691611 I
e allMis1.JH739658                38113 134 -    691381 I
e falPer1.KB391026              1266701 11 +   1688145 I
e falChe1.KB397934              1269954 11 -   4640569 I
e macEug2.GL124958                26121  0 -     59456 I
e galGal4.chrUn_AADN03023623       2011  0 -      5081 I
e geoFor1.JH740049               182930  0 -   1550430 I
e anaPla1.KB742696              1254472  0 -   1270250 I
e amaVit1.KB277496                 6803 35 -     10329 I
e apaSpi1.KB929104                22324  0 +    818693 I
e cheMyd1.KB605988               134509  0 +    155857 I
e chrPic2.chrUn_KK088237v1      1206822  0 +  22294289 I
e pelSin1.JH211051                23303  0 +    476004 I
e melUnd1.JH556589              7674127 5368 -   7952740 I
e taeGut2.chr28                 3062068  0 +   4963201 I
e pteAle1.KB031146              3117297  0 -   3193751 C
e cerSim1.JH767738              9902745 157 +  34209287 I

a score=14129.000000
s hg38.chr8_KI270814v1_alt       120248 31 +    141812 -AAAGTTTATTTAGC-AAAA---------TTAAAATTAA-------ATC
s panTro4.chr8                 55022734 30 + 143986469 -AAAGTTTATTT-GC-AAAA---------TTAAAATTAA-------ATC
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59163323 31 + 153482349 -AAAGTTTATTTAGC-AAAA---------TTAAAATTAA-------ATC
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                81378899 30 - 104879549 -AAGGATAATTAAGC-AAAA----------CAAAATTAA-------ATT
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                 61690290 30 + 150158102 -AA-GTTTATTTAGC-AAAA---------TTAAATTTAA-------ATC
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                 58364118 30 + 146850525 -AA-GTTTATTTAGC-AAAA---------TTAAATTTAA-------ATC
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                 53284659 30 + 139301422 -AA-GTTTATTTAGC-AAAA---------TTAAATTTAA-------ATC
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                 33672420 31 + 155834243 -aaggttaatttagc-aaAA---------CAAAAATTAA-------ATC
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196              4059703 31 +   9144518 -AAGGTTGATTTAGC-AAAA---------TAAAACTTAA-------AAC
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762              1559066 31 -   1847653 -aaagttgttttagc-aaga---------taaaaattaa-------aac
i otoGar3.GL873762             C 0 C 0
s orcOrc1.KB316915              2906224 33 -  11690531 -gaggttgatttaac-aaca---------taaaaaaattaa-----aac
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                10870551 32 +  33672925 -aagtttgacttagc-agca---------taaagaattaa------aac
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738              9902902 35 +  34209287 --AATGTTCCTCA---AGCA---------AAAAGAGGAAGATGGGCAAC
i cerSim1.JH767738             I 157 C 0
s myoLuc2.GL429990               232240 38 -   2104649 -acaaagacctcaaa-agca---------agaAAAATAGGAGGTTGAGC
i myoLuc2.GL429990             I 20 C 0
s loxAfr3.scaffold_15          39447810 37 -  55688157 -----TTTTTTAAAATAACATGCTTTCAGTGAAAGTTTA-------CAC
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                14610 31 +   6345240 -AGGGTTGATTGAGA-AACA---------TAAAAATTAA-------AAC
i triMan1.JH594766             C 0 C 0
s sarHar1.chr5_GL861647_random   424153 31 -   4230514 -CTAGGATACAGAGA-AAGA---------GTGAAATTAA-------GTG
i sarHar1.chr5_GL861647_random C 0 C 0
s ornAna1.Ultra479              3864750 24 -   6008416 --------ATTAGGG-GAAC---------TCAGAATAAA-------GGT
i ornAna1.Ultra479             C 0 C 0
s melGal1.chr1                 24924545 32 + 204065131 AACAGTTTCTATTGT-ACCC---------TAAAGGTTAT-------ATC
i melGal1.chr1                 C 0 I 4226
e vicPac2.KB632521              1177339  0 -   7152218 C
e camFer1.KB018161                 5921  0 -     34802 C
e danRer10.chr19               48218196 5198 -  48790377 I
e tetNig2.chr10                 6379385  0 +  13272281 I
e punNye1.JH419232              4767720 338 +   5065651 T
e mayZeb1.JH720522               609382  0 -   6649201 I
e hapBur1.JH425491               252157  0 -   1273513 I
e neoBri1.JH422308              3491820  0 -   5414369 I
e araMac1.AOUJ01470298              637  0 -       895 I
e takFla1.KE121866               209731  0 +    220559 I
e fr3.chr10                     9064512  0 +   9126174 I
e ficAlb2.chr4A                19371809  0 +  21182716 I
e anoCar2.chrUn_GL344195          39255 4204 +     59083 I
e pseHum1.KB221209             10759694 18 +  11841479 I
e zonAlb1.KB913045             12575724 5731 +  16390125 I
e colLiv1.KB375822              2439586 31 +   2691611 I
e allMis1.JH739658                38113 134 -    691381 I
e falPer1.KB391026              1266701 11 +   1688145 I
e falChe1.KB397934              1269954 11 -   4640569 I
e macEug2.GL124958                26121  0 -     59456 I
e galGal4.chrUn_AADN03023623       2011  0 -      5081 I
e geoFor1.JH740049               182930  0 -   1550430 I
e anaPla1.KB742696              1254472  0 -   1270250 I
e amaVit1.KB277496                 6803 35 -     10329 I
e apaSpi1.KB929104                22324  0 +    818693 I
e cheMyd1.KB605988               134509  0 +    155857 I
e chrPic2.chrUn_KK088237v1      1206822  0 +  22294289 I
e pelSin1.JH211051                23303  0 +    476004 I
e melUnd1.JH556589              7674127 5368 -   7952740 I
e taeGut2.chr28                 3062068  0 +   4963201 I
e pteAle1.KB031146              3117297  0 -   3193751 C

a score=-114694.000000
s hg38.chr8_KI270814v1_alt       120279 40 +    141812 ACACTGAATATGAGAAAA----------AGAT---------------AAAATAAAAGA---CATCATA-
s panTro4.chr8                 55022764 40 + 143986469 ACACTGCTTATGAGAAAA----------AGAT---------------AAAATAAAAGA---CATTATA-
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59163354 43 + 153482349 ACGCTGCATATGAGAAAA----------AGATA------------ACAAAATAAAAGA---CATCATA-
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                81378929 33 - 104879549 AACCTGCA-ATGAGAA-------------------------------AAAATAAAAGG---CAGCATA-
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                 61690320 35 + 150158102 ACCCTGCATATGAGAAAA----------AG--------------------ATAAAAGA---CATCATA-
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                 58364148 40 + 146850525 ACCCTGCATATGAGAAAA----------AGAT---------------AAAATAAAAGA---CATCATA-
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                 53284689 40 + 139301422 ACCCTACATATGAGAAAA----------AGAT---------------AAAATAAAAGA---CATCATA-
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                 33672451 34 + 155834243 ACCCTGCATATGAGAA-------------------------------AAAATAAAAGG---CAGCATA-
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196              4059734 28 +   9144518 ACTCT--ATTTAAGAA-------------------------------A----AAAAGA---CAACCTA-
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762              1559097 42 -   1847653 atcctgtgtgt-agaaag----------aatta------------tcaaaagaaaagc---caaCATC-
i otoGar3.GL873762             C 0 C 0
s orcOrc1.KB316915              2906257 46 -  11690531 cctctgtagatcagaaaa----------gaaga---------ttaacaaaataaaaga---caatgag-
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                10870583 39 +  33672925 cctctgtatatcaaaata----------atact---------att-------aaaaga---caatgtc-
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738              9902937 46 +  34209287 AGATGTTAGCTCAGGGCA----------AATCT---------TCCTTAGCAAAAAAGA---AAACTTT-
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146              3117297 22 -   3193751 --------TAACAAAATA----------A-------------------------AAGA---AAATGTT-
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990               232278 30 -   2104649 AATC----TAAGAAAGTA----------ATATT---------------------AAGA---AGATGTA-
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15          39447847 50 -  55688157 AGC---------AAATTAAGTTCCCGTTTGACA---------GTTTCTATACAGATAGGTCAGTGACA-
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                14641 37 +   6345240 ATT---------AGAAAA----------TAATA---------TTAGCAAGACAGAAGA---AGGCATA-
i triMan1.JH594766             C 0 C 0
s sarHar1.chr5_GL861647_random   424184 40 -   4230514 AGAATAGGAATGAGAGAG----------GGGGCA--------ATTGGAGGAGATAAGA-----------
i sarHar1.chr5_GL861647_random C 0 N 0
s ornAna1.Ultra479              3864774 56 -   6008416 ATTCCCCATGTCACAAAA----------GGAACAACAATAGCCTCCTGGAAAGTGAGG---CTGTATTT
i ornAna1.Ultra479             C 0 C 0
e vicPac2.KB632521              1177339  0 -   7152218 C
e camFer1.KB018161                 5921  0 -     34802 C
e danRer10.chr19               48218196 5198 -  48790377 I
e tetNig2.chr10                 6379385  0 +  13272281 I
e punNye1.JH419232              4767720 338 +   5065651 T
e mayZeb1.JH720522               609382  0 -   6649201 I
e hapBur1.JH425491               252157  0 -   1273513 I
e neoBri1.JH422308              3491820  0 -   5414369 I
e araMac1.AOUJ01470298              637  0 -       895 I
e takFla1.KE121866               209731  0 +    220559 I
e fr3.chr10                     9064512  0 +   9126174 I
e ficAlb2.chr4A                19371809  0 +  21182716 I
e anoCar2.chrUn_GL344195          39255 4204 +     59083 I
e pseHum1.KB221209             10759694 18 +  11841479 I
e zonAlb1.KB913045             12575724 5731 +  16390125 I
e colLiv1.KB375822              2439586 31 +   2691611 I
e allMis1.JH739658                38113 134 -    691381 I
e falPer1.KB391026              1266701 11 +   1688145 I
e falChe1.KB397934              1269954 11 -   4640569 I
e macEug2.GL124958                26121  0 -     59456 I
e galGal4.chrUn_AADN03023623       2011  0 -      5081 I
e geoFor1.JH740049               182930  0 -   1550430 I
e melGal1.chr1                 24924577 4226 + 204065131 I
e anaPla1.KB742696              1254472  0 -   1270250 I
e amaVit1.KB277496                 6803 35 -     10329 I
e apaSpi1.KB929104                22324  0 +    818693 I
e cheMyd1.KB605988               134509  0 +    155857 I
e chrPic2.chrUn_KK088237v1      1206822  0 +  22294289 I
e pelSin1.JH211051                23303  0 +    476004 I
e melUnd1.JH556589              7674127 5368 -   7952740 I
e taeGut2.chr28                 3062068  0 +   4963201 I

a score=88010.000000
s hg38.chr8_KI270814v1_alt     120319  80 +    141812 CTTATATAATATTT-ACCAC-------------GTGTTT---TTGTGTGTG---------------------T----A-CATATTA------AAAATGGCTAT------TCATT---TTACAG---A---GAATTCTT-CCAAAT
s panTro4.chr8               55022804  80 + 143986469 CTTATATAATATTT-ACCAC-------------GTGTTT---TTGTGTGTG---------------------T----A-CATATTA------AAAATGGCTAT------TCATT---TTACAG---A---GAATTATT-CCAAAT
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8               59163397  80 + 153482349 CTTATATAATATTT-ACCAC-------------GTGTTT---TTGTGTATG---------------------T----A-CATATTA------AAAATGGCTAT------TCATT---TTACAG---A---GAATTCTT-CCAAAT
i ponAbe2.chr8               C 0 C 0
s nomLeu3.chr18              81378962  88 - 104879549 CTTGTAAAATATTT-ACTACACATG-------TATGTGC---GTGTGTGTA---------------------T----A-CATATTAGATTTTAAAATCG----------TCATT---TTATAG---A---TAATTCAC-TTAAAT
i nomLeu3.chr18              C 0 C 0
s rheMac3.chr8               61690355  82 + 150158102 CTTGTACAATATTT-GCCAC----A-------TTTGTTT---TGTTGTGTG---------------------T----A-CATATTA------AAAACGGATAT------TCATT---TTACAG---A---GAATTCTT-CCAAAT
i rheMac3.chr8               C 0 C 0
s macFas5.chr8               58364188  82 + 146850525 CTTGTACAATATTT-GCCAC----A-------TTTGTTT---TGTTGTGTG---------------------T----A-CATATTA------AAAACGGATAT------TCATT---TTACAG---A---GAATTCTT-CCAAAT
i macFas5.chr8               C 0 C 0
s chlSab2.chr8               53284729  82 + 139301422 CTTGTACAATATTT-GCCAC----A-------TTTGTTT---TTTTGTGTG---------------------T----A-CATATTA------AAAATGGATAT------TCATT---TTACAG---A---GAATTCTT-CCAAAT
i chlSab2.chr8               C 0 C 0
s calJac3.chr7               33672485  83 + 155834243 CATGTAAAATATTT-ACTAC----A-------CATGTAT---GTGCATATG---------------------TGAATA-CATATTAGATTT-AAAATTCTTAC---------TT---TTATAG---A---AAATTC------ACT
i calJac3.chr7               C 0 C 0
s saiBol1.JH378196            4059762  83 +   9144518 CTTACAAAATATTT-ACAAC----A-------TATACATATAATACATATT---------------------T------CACATCAGA--T-GAAATATGTAT---------CT---TCATATTACA---GAATTC-----AAAT
i saiBol1.JH378196           C 0 C 0
s otoGar3.GL873762            1559139  82 -   1847653 ATTGCAAAAATTCT-TACAG----T-------GATATTT---GTACACA-A---------------------T----A-TATATCAGGTG--AAAACACACAT---------TT---TTACAG---A---GAATTCTT-TGGAAT
i otoGar3.GL873762           C 0 C 0
s orcOrc1.KB316915            2906303  73 -  11690531 cttttaaaatatat--caac----------------------atatttgta---------------------t------caggcaag-----aaaacatatct------tcatt---ttacag---a---gaattctt-tgaaat
i orcOrc1.KB316915           C 0 C 0
s equCab2.chr29              10870622  72 +  33672925 attgcaaaatattt-acagc----------------------atatttata---------------------t------cagataa------aaaatatatct------tcatt----aacag---a---gaattctt-tgaaat
i equCab2.chr29              C 0 C 0
s cerSim1.JH767738            9902983  67 +  34209287 A----AAAATATTC-ACAGC----------------------ATATTTATA---------------------T------TAGAAGA------AAAATATATCT------TCATT-----GCAA---A---GAATTCTT-TGAAAT
i cerSim1.JH767738           C 0 C 0
s pteAle1.KB031146            3117319  73 -   3193751 TTTGCAAAATATTT-ACAAT----------------------GTATGTATA---------------------T------CAGAGAA------AAAGTATATCT------TCATT---TTACAG---A---GAAGTCTT-TGAAAT
i pteAle1.KB031146           C 0 C 0
s myoLuc2.GL429990             232308  73 -   2104649 CTTGCAAAATATTT-ACAAC----------------------GTATGCACA---------------------T------TGGAGAA------AAAGTATATCT------TTATT---TTACAG---A---GGAGACTT-TGAAAT
i myoLuc2.GL429990           C 0 C 0
s loxAfr3.scaffold_15        39447897 120 -  55688157 TTAGGTACATTTTTCACAAT----GAGTCAACATTCTCT---CTTATTGCATTCTGTCAGTTTCCACTGCTCT------TAGTTAAA-----AGCAAGTATTTTGAAGGTTAAT---TGAGAA---ATGCAAATTTTT-TCAAAT
i loxAfr3.scaffold_15        C 0 C 0
s triMan1.JH594766              14678  70 +   6345240 CTAGCAAAATATTT-GTAAT----A----------------------TGCA---------------------T------TAGATAAT-----AATATatatct------tcatt---ttgtaa---a---gaattctt-tcaaat
i triMan1.JH594766           C 0 C 0
s ornAna1.Ultra479            3864830  87 -   6008416 TTTttaagatattt-attaa------------gtagttg---ctatgtgcc---------------------a----agcacatggt-----aagatgcagtt------taattagttaagac---c---caattcctgccaaat
i ornAna1.Ultra479           C 0 I 5904
e vicPac2.KB632521            1177339   0 -   7152218 C
e camFer1.KB018161               5921   0 -     34802 C
e danRer10.chr19             48218196 5198 -  48790377 I
e tetNig2.chr10               6379385   0 +  13272281 I
e punNye1.JH419232            4767720 338 +   5065651 T
e mayZeb1.JH720522             609382   0 -   6649201 I
e hapBur1.JH425491             252157   0 -   1273513 I
e neoBri1.JH422308            3491820   0 -   5414369 I
e araMac1.AOUJ01470298            637   0 -       895 I
e takFla1.KE121866             209731   0 +    220559 I
e fr3.chr10                   9064512   0 +   9126174 I
e ficAlb2.chr4A              19371809   0 +  21182716 I
e anoCar2.chrUn_GL344195        39255 4204 +     59083 I
e pseHum1.KB221209           10759694  18 +  11841479 I
e zonAlb1.KB913045           12575724 5731 +  16390125 I
e colLiv1.KB375822            2439586  31 +   2691611 I
e allMis1.JH739658              38113 134 -    691381 I
e falPer1.KB391026            1266701  11 +   1688145 I
e falChe1.KB397934            1269954  11 -   4640569 I
e macEug2.GL124958              26121   0 -     59456 I
e galGal4.chrUn_AADN03023623     2011   0 -      5081 I
e geoFor1.JH740049             182930   0 -   1550430 I
e melGal1.chr1               24924577 4226 + 204065131 I
e anaPla1.KB742696            1254472   0 -   1270250 I
e amaVit1.KB277496               6803  35 -     10329 I
e apaSpi1.KB929104              22324   0 +    818693 I
e cheMyd1.KB605988             134509   0 +    155857 I
e chrPic2.chrUn_KK088237v1    1206822   0 +  22294289 I
e pelSin1.JH211051              23303   0 +    476004 I
e melUnd1.JH556589            7674127 5368 -   7952740 I
e taeGut2.chr28               3062068   0 +   4963201 I

a score=120629.000000
s hg38.chr8_KI270814v1_alt     120399  49 +    141812 CAA---CA--------------------------------------------------------TGAAA-------------------ATA--------CCTC------------------------------------------------TAAAACTGGGCAAAGTACTTTTTC-CAG---CTCTG
s panTro4.chr8               55022884  49 + 143986469 CAA---TA--------------------------------------------------------TGAAA-------------------ATA--------CCTC------------------------------------------------TAAAACTGGGCAAAGTACCTTTTC-CAG---CTCTG
i panTro4.chr8               C 0 C 0
s ponAbe2.chr8               59163477  49 + 153482349 CAA---CA--------------------------------------------------------TGAAA-------------------ATA--------CCCC------------------------------------------------TAAAACTGGGCAAAGTATTTTTTC-CAT---CTCTG
i ponAbe2.chr8               C 0 C 0
s nomLeu3.chr18              81379050 118 - 104879549 CAA---CAAAAAACCCTCTAATTTAAAATTGAGCAATTTAAATTAGAGATCTAAATTGCAGATCTAAAA-------------------ATAGTACTTTGCCTC-------------------------------------------TAATTTAAAACTGGGCAAAGTATTTTCTT-AAG---ATCTG
i nomLeu3.chr18              C 0 C 0
s rheMac3.chr8               61690437  49 + 150158102 CAA---CA--------------------------------------------------------AGAAA-------------------AAA--------TCTC------------------------------------------------TAAAATTGGGTGAAGTACTTTTTC-CAG---CTCTG
i rheMac3.chr8               C 0 C 0
s macFas5.chr8               58364270  49 + 146850525 CAA---CA--------------------------------------------------------AGAAA-------------------AAA--------TCTC------------------------------------------------TAAAATTGGGTGAAGTACTTTTTC-CAG---CTCTG
i macFas5.chr8               C 0 C 0
s chlSab2.chr8               53284811  49 + 139301422 CAA---CA--------------------------------------------------------AGAAA-------------------AAA--------TCTC------------------------------------------------TAAAATTGGGTGAAGTACTTTTTC-CAG---CTCTG
i chlSab2.chr8               C 0 C 0
s calJac3.chr7               33672568 112 + 155834243 CAA---CA--------------------------------------------------------AAAAACCCTCTGATTTAAAATTGGGTA--------ATTAAATTAGAGATCTAAATTGTATATCTAAAAAAGTACTTTGCTTCTAATTTAAAATTAGGCAAATTACTT-----AAG---ATCTG
i calJac3.chr7               C 0 C 0
s saiBol1.JH378196            4059845  50 +   9144518 CAA---CA--------------------------------------------------------AGAAA-------------------ATA--------ATTA------------------------------------------------TAAATTTGGGCAAAGTACTTTTTTGCAG---ATCTA
i saiBol1.JH378196           C 0 C 0
s otoGar3.GL873762            1559221  50 -   1847653 TGG---CA--------------------------------------------------------AGACT-------------------AAA--------GATC------------------------------------------------TAAAATTGGGCAAAGTGCTTTTTTGCAG---TTCTA
i otoGar3.GL873762           C 0 C 0
s orcOrc1.KB316915            2906376  58 -  11690531 cagtaagg--------------------------------------------------------ggaaa-------------------aaa--------cctc-------------------------------------------taatttgaaattgagcaaagtacttTTTTGCAT---ATCCa
i orcOrc1.KB316915           C 0 C 0
s equCab2.chr29              10870694  54 +  33672925 gaa----g--------------------------------------------------------ggaaa-------------------aaa--------cctt-------------------------------------------taatttgaaattaggtaaagtccttTTCTGCAT---ATCTA
i equCab2.chr29              C 0 C 0
s cerSim1.JH767738            9903050  55 +  34209287 CAA---GG--------------------------------------------------------GGAAA-------------------AAA--------CCTT-------------------------------------------TAATTTGAAGTTGGGTAAAGTCCTTTTATGCAT---ATCta
i cerSim1.JH767738           C 0 C 0
s pteAle1.KB031146            3117392  50 -   3193751 CAA----A--------------------------------------------------------AGAAA-------------------AAA--------C----------------------------------------------TCATTTGAAATTGGACAAGTA-CTTTTGTATAT---ATCta
i pteAle1.KB031146           C 0 C 0
s myoLuc2.GL429990             232381  54 -   2104649 CAACAAGA--------------------------------------------------------AAAAA-------------------AAA--------C----------------------------------------------TCATTTAAAATTGGACAAAGT-GTTTTTAGCAT---ATGTA
i myoLuc2.GL429990           C 0 C 0
s loxAfr3.scaffold_15        39448017  62 -  55688157 CCA---CA--------------------------------------------------------AGAAA-------------------AAA--------GCTA--------------------------------------CCCTCTTAATTGAAATTAGGCAAAGTAGTTTTTG-CAGAAAATCTA
i loxAfr3.scaffold_15        C 0 C 0
s triMan1.JH594766              14748  59 +   6345240 cca---ca--------------------------------------------------------agaag-------------------aaa--------acta--------------------------------------aactctaatttgaaattagacaaagtagtttttg-cag---atcta
i triMan1.JH594766           C 0 C 0
e vicPac2.KB632521            1177339   0 -   7152218 C
e camFer1.KB018161               5921   0 -     34802 C
e danRer10.chr19             48218196 5198 -  48790377 I
e ornAna1.Ultra479            3864917 5904 -   6008416 I
e tetNig2.chr10               6379385   0 +  13272281 I
e punNye1.JH419232            4767720 338 +   5065651 T
e mayZeb1.JH720522             609382   0 -   6649201 I
e hapBur1.JH425491             252157   0 -   1273513 I
e neoBri1.JH422308            3491820   0 -   5414369 I
e araMac1.AOUJ01470298            637   0 -       895 I
e takFla1.KE121866             209731   0 +    220559 I
e fr3.chr10                   9064512   0 +   9126174 I
e ficAlb2.chr4A              19371809   0 +  21182716 I
e anoCar2.chrUn_GL344195        39255 4204 +     59083 I
e pseHum1.KB221209           10759694  18 +  11841479 I
e zonAlb1.KB913045           12575724 5731 +  16390125 I
e colLiv1.KB375822            2439586  31 +   2691611 I
e allMis1.JH739658              38113 134 -    691381 I
e falPer1.KB391026            1266701  11 +   1688145 I
e falChe1.KB397934            1269954  11 -   4640569 I
e macEug2.GL124958              26121   0 -     59456 I
e galGal4.chrUn_AADN03023623     2011   0 -      5081 I
e geoFor1.JH740049             182930   0 -   1550430 I
e melGal1.chr1               24924577 4226 + 204065131 I
e anaPla1.KB742696            1254472   0 -   1270250 I
e amaVit1.KB277496               6803  35 -     10329 I
e apaSpi1.KB929104              22324   0 +    818693 I
e cheMyd1.KB605988             134509   0 +    155857 I
e chrPic2.chrUn_KK088237v1    1206822   0 +  22294289 I
e pelSin1.JH211051              23303   0 +    476004 I
e melUnd1.JH556589            7674127 5368 -   7952740 I
e taeGut2.chr28               3062068   0 +   4963201 I

a score=880029.000000
s hg38.chr8_KI270814v1_alt       120448 168 +    141812 CAAGTCACCTA---TGCACAT-AGGAAAAAAATACTTAATGTGTC--CGATAAGAGAAGG-A---CTTTAATTTAAAAAAGGAATAAAATGCCG------------------------------------------TTTTCTGTCCT--AAGTTTGTGAAGATGAGGAGCAGTGATA-------TTtacacttctgcttaaag-------ttaagttgctg-atgacttttcaaaa--a
s panTro4.chr8                 55022933 167 + 143986469 CAAGTCACCTA---TGCACAT-AGG-AAAAAATACTTAATGTGTC--TGATAAGAGAAGG-A---ATTTAATTTAAAAAAGGAATGAAATGCCG------------------------------------------TTTTCTATCCT--AAGTTTGTGAGGATGAGGAGCAGTGATA-------TTTACACTTCTGCTTAAAG-------TTAAGTTGCTG-ATGACTTTTCAAAA--A
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59163526 169 + 153482349 CAAGTCACCTA---TGCACAT-AGG-AAAAAATACTTAATGTGTC--TGATAAGAGAAGG-A---ATTTAACTTAAAAAAGGAATGAAATGCCA------------------------------------------TTTTCTatcctcaaagtttgtgaggatgaggagcagtgata-------tttacacttctgcttaaag-------ttaagttgctg-atgacttttcaaaa--a
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                81379168 171 - 104879549 TAAGTGACCTA---TGCACAC-AGA-GAACAATATTTAGTGTTCC--TGGTTAGAGAAGGCA---TTTTAAGTTAAAAGAGGAATCAAATACTG------------------------------------------TTTTCTATCTACAAAGTTTGTGAGGATAAAGAGCAGTGATA-------TTTATACTGCTGTTTAAAG------TTTAAGTTGCAG-ATAACTTTTCAAAT--A
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                 61690486 167 + 150158102 CAAGTCACCTA---T-CACAT-ATGAAAAAAATATTTAGTGTTTC--TGAT--GAGAACA-A---ATTTAATTTAAAAAAGGAATAAAATACCG------------------------------------------TTTTCTGTCCTCAAAGTTTGTGAGGATGAGGAGCAGTGATA-------TTTACACTGCTGCTTAAAG-------TTAAGTTGCTG-ATGACTTTTCAAAA--A
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                 58364319 167 + 146850525 CAAGTCACCTA---T-CACAT-ATGAAAAAAATATTTAGTGTTTC--TGAT--GAGAACA-A---ATTTAATTTAAAAAAGGAATAAAATACCG------------------------------------------TTTTCTGTCCTCAAAGTTTGTGAGGATGAGGAGCAGTGATA-------TTTACACTGCTGCTTAAAG-------TTAAGTTGCTG-ATGACTTTTCAAAA--A
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                 53284860 168 + 139301422 CAAGTCACCTA---TGCACAT-ATGAAAAAAATACTTAGTGTTTC--TGAT--GAGAACA-A---AATTAATTTAAAAAAGGAATGAAATACCG------------------------------------------TTTTCTGTCctcaaagtttgtgaggatgaggagcagtgata-------tttacactgctgcttaaag-------ttaagttgctg-atgacttttcaaaa--a
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                 33672680 166 + 155834243 CAGGTGACCTA---TGCACTC-AGGGGATAG-----TATTGTTTTCATGGTTAGAGAAGG-C---ATTCAAGTTAAAAGAGGAATC-AATACTG------------------------------------------TTT-CTATCCATAAAGTTTGTGACAATAAAGAGCAGTGATA-------TTTATACTGCCGCTTAAAG------TTTAAGTTGCAG-ATGACGTTTCAAAT--A
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196              4059895 170 +   9144518 TAAGTGACCTA---CATACAT-AAGAAAAAAATACTTAATGTTTC--TTATAAGAGAAGG-A---ATTCATGTTAAAAGAGAAATTAAATACTG------------------------------------------TTTCCCATCCACAAAGTTTGTGAGAATGAAGA-CAGTAGTA-------CTTACATAACTGCTTAACG------TTTAAGTTGCTA-ATGACTTTTCAAAA--A
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762              1559271 167 -   1847653 CAAGTAATGTA---TGCACAT-AG--AAAAAGAAATTAGTGTTCC--TGGTTAGAGAAAG-A---ATTTAAATTAAA--AGGAAGAGAATACTG------------------------------------------TTTTCTCTCCACAGAGTTTGTGAGGATAGAGAGCAGTGGCA-------TTAGGACTACTGCTTCAAG------TTTAAGGTGTCC-ATAACTTTCCAAAT--A
i otoGar3.GL873762             C 0 C 0
s orcOrc1.KB316915              2906434 168 -  11690531 taagtgaccaa---tggatat-agg-aaaaaaaatttagcatttc--tggtaataaaagg-a---atttaagttaaac-aggaatgaaaaac-a------------------------------------------ttttcccttcacaaagtttgtgaagatgaagaacagtggtg-------cttatactgctgtttaaag------tctaagttgctt-ttgacttttcaaat-a-
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                10870748 151 +  33672925 CAAGTGACCGG---TGGGCATGAGG-AAAAAATATTTAGTGTCCC--TGGAAAGAAAAGG-A---ATTTAAGTTAAAAGAAGAATGAAATACTG------------------------------------------TTTTCCATCCACAAA-TTTGTCAGGATGAG------------------TTTA-------------Agtgaaactttaaattgctt-ttgactttttaata---
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738              9903105 145 +  34209287 caagtgaccag---tggacacgagg-aaaatatatttagtgtccc--tggaaagaaaagg-a---atttaagttaaaagaagaatgaaatatcg------------------------------------------ttttccatccacaaa-cttgtgaggatGAG------------------TTTA-------------AG------TTTAAATTGCTT-TTGACTTTTCAATA---
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146              3117442 162 -   3193751 catgtgatcaa---tggacat-agg-aaaaaa----tagtattcc--tggtatgaaaaga-a---atttaagttaaaagaggaatgaaatacca-------------------------------------------tttccatctacaaagtttgtgaagatGAGGAGCCATTGTA-------CTTATATTGCTGCT---AA------TTTATTTTATTTATTTATTTTTTAAAA---
i pteAle1.KB031146             C 0 I 133
s myoLuc2.GL429990               232435 152 -   2104649 CAAGGGAATGA---TGGACAT-AGG-ATAAGATATTTAGTGTCAC--TGGTAAGAAA----------------------AGGAGTGAAATACTA------------------------------------------TTTTCCatgcacaaagtttgtgaagatgaccagcagtggta-------cttatactgctgcttaaag------gttaagttgctt-ttgacttttcaaata--
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15          39448079 164 -  55688157 CAAGTGACCA-------ACAT-AGG-AAAAAATACATAGTGTCCC--TGGTAAGAGAAGA-A---ATTGAAGTTATAAGAGAAATGAAATACAA------------------------------------------TTTTCTACCcacaaagcttgtgaggatgaggtgtaatgaaa------atttacactgctg---gaag------tttaatttgctt-atgactgttcaaat--a
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                14807 161 +   6345240 caagtgaccag---ctgacat-agg-aaaaaatatttagtgtccc--tggtaaaagaaga-a---atta-------aagacaaatgaaatacca------------------------------------------ttttctaccgacaaagcttgtgagcatgaggtgtaatgaca------gtttacactgctg---gaag------tttaagttgctt-atgacttttcaaat--a
i triMan1.JH594766             C 0 C 0
s sarHar1.chr5_GL861647_random   316370 222 -   4230514 CGAGGCACCGAAATTGTACAT-AGGGAagttaaatttcatatttt--taaaaggacaggT-ATGTTTTAAATACTGAAAATCAGTGAAATCCTGGCTGGAAATTTGATGGTACATTATTTACTTATCCAAACTGAATTTTATATCAGTAA--TTGGTGAAATATACAAGTGATCATATGTGttgttaaaaataatgttaaaaa------acttattt--tt-atgtcatttccaAT--A
i sarHar1.chr5_GL861647_random N 0 C 0
e vicPac2.KB632521              1177339   0 -   7152218 C
e camFer1.KB018161                 5921   0 -     34802 C
e danRer10.chr19               48218196 5198 -  48790377 I
e ornAna1.Ultra479              3864917 5904 -   6008416 I
e tetNig2.chr10                 6379385   0 +  13272281 I
e punNye1.JH419232              4767720 338 +   5065651 T
e mayZeb1.JH720522               609382   0 -   6649201 I
e hapBur1.JH425491               252157   0 -   1273513 I
e neoBri1.JH422308              3491820   0 -   5414369 I
e araMac1.AOUJ01470298              637   0 -       895 I
e takFla1.KE121866               209731   0 +    220559 I
e fr3.chr10                     9064512   0 +   9126174 I
e ficAlb2.chr4A                19371809   0 +  21182716 I
e anoCar2.chrUn_GL344195          39255 4204 +     59083 I
e pseHum1.KB221209             10759694  18 +  11841479 I
e zonAlb1.KB913045             12575724 5731 +  16390125 I
e colLiv1.KB375822              2439586  31 +   2691611 I
e allMis1.JH739658                38113 134 -    691381 I
e falPer1.KB391026              1266701  11 +   1688145 I
e falChe1.KB397934              1269954  11 -   4640569 I
e macEug2.GL124958                26121   0 -     59456 I
e galGal4.chrUn_AADN03023623       2011   0 -      5081 I
e geoFor1.JH740049               182930   0 -   1550430 I
e melGal1.chr1                 24924577 4226 + 204065131 I
e anaPla1.KB742696              1254472   0 -   1270250 I
e amaVit1.KB277496                 6803  35 -     10329 I
e apaSpi1.KB929104                22324   0 +    818693 I
e cheMyd1.KB605988               134509   0 +    155857 I
e chrPic2.chrUn_KK088237v1      1206822   0 +  22294289 I
e pelSin1.JH211051                23303   0 +    476004 I
e melUnd1.JH556589              7674127 5368 -   7952740 I
e taeGut2.chr28                 3062068   0 +   4963201 I

a score=296490.000000
s hg38.chr8_KI270814v1_alt       120616  95 +    141812 gacaatttg------------gtggtaagtaccatgtttaaa-----ctatgcgt---atgccctt-tcttgatcaatt---cca-ttatagtaaaatacatttaggaaacaacgagaga
s panTro4.chr8                 55023100  92 + 143986469 GACAATTTG------------GTGGTAAGTACCATGTTTAAA-----CTATGCGT---ATGCCCTT-TCTTGATCAATT---CCA-TTATAGTAAAATACATTTAGGA---AGCGAGAGA
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59163695  95 + 153482349 gacaatttg------------gtggtaagtaccacgtttaaa-----ctatgtgt---atgccctt-tcttgatcaatt---cca-ttatagtaaaatacatttaggaaacaatgagaga
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                81379339  14 - 104879549 GACAA-----------------------------------------------------------TT-TGGTGGT----------------------------------------------
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                 61690653  88 + 150158102 GTCAGTTGG------------GTGGTAAGTATCACATTTAAA-----CTATGTGT---ATGCCCTT-TCTTGATCAATT---CCA-TTATATTTAAATATATTTAGGAAACAA-------
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                 58364486  95 + 146850525 GTCAGTTGG------------GTGGTAAGTATCACATTTAAA-----CTATGTGT---ATGCCCTT-TCTTGATCAATT---CCA-TTATATTTAAATATATTTAGGAAACAACGAGAGA
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                 53285028  93 + 139301422 gtcaatttg------------gtggtaagtatcacatttaaa-----ctatgtg-----tgccctt-tcttgatcaatt---cca-ttatatttaaatatatttaggaaacaacgagaga
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                 33672846  95 + 155834243 GATAATTTG------------GTGGTAAGTACCATATTTAAA-----AATTATAT---ATGCCCAT-TAGTGATCAATA---CTA-TTATACTGAAATATTTTTAGAAAATAATGAAACA
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196              4060065 100 +   9144518 GAGAATTTGGTGGTAATAAATGTGGTAAGCACCACATTTAAA-----AAACATAT---ATGCCCTT-TACTCATCAATT---CCA-TTATGCTGAAATATCT-------GTAACTAAAGA
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762              1559438 100 -   1847653 GATAATTTG------------GT-GCCAGCACCACATTTAAAAAAAGAAATATGT---ATGTCCTT-TAC--ATACATTGTACCA-TTGTACTAAAATATCTTTAGTAAGTAATCAATGA
i otoGar3.GL873762             C 0 C 0
s orcOrc1.KB316915              2906602  92 -  11690531 ggcaatttg------------gtgataagtaccacatttaaa-----aaatgtat---attccctt-tacacatcaatt---ctctttatacaa----attagaggtaaataattagaga
i orcOrc1.KB316915             C 0 I 11
s equCab2.chr29                10870899  92 +  33672925 ggcaatgtg------------ataataagtaccacattttaa-----aaatgtgt---attccctt-tatccatcaatt---ctgtttatactgagctatcttgaggaaa----tTGAGG
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738              9903250  96 +  34209287 GGCAATGTG------------ATAATAAGTACCACATTTTAA-----AAATATAT---ATTCCCTT-TACCTATCAATT---CTATTTATGCTAAAATATCTTTAGTAAATAATTAGAGA
i cerSim1.JH767738             C 0 C 0
s myoLuc2.GL429990               232587  95 -   2104649 gacaacttg------------tttattagtaccaca-tttaa-----aaatttat---gttatttt-tgcccattaatt---ctatttatactaaaatatctttataaaataactagagg
i myoLuc2.GL429990             C 0 I 159
s loxAfr3.scaffold_15          39448243  97 -  55688157 ggctatttg------------gtgataagtatcgcatcttaa-----aaatgttt---atacccttctagccatcaatt---ctatttatattaaaatatctttagaaaataaataggga
i loxAfr3.scaffold_15          C 0 I 7
s triMan1.JH594766                14968  97 +   6345240 ggctatttg------------gtgataagcatcacatcttaa-----aaatgtat---atacacttttagccatcaatt---ccatttatattaaaatatcttcagaaaataaatagaga
i triMan1.JH594766             C 0 I 7
s sarHar1.chr5_GL861647_random   316592  84 -   4230514 ----------------------TGCCATTCATTAGCTTTGAA-----AAATAAGTGACAaagtatt-tcttaat-attt---ttacttaTCCTAAAA----GCCAAGAAATAAAAGCATA
i sarHar1.chr5_GL861647_random C 0 C 0
e vicPac2.KB632521              1177339   0 -   7152218 C
e camFer1.KB018161                 5921   0 -     34802 C
e danRer10.chr19               48218196 5198 -  48790377 I
e ornAna1.Ultra479              3864917 5904 -   6008416 I
e tetNig2.chr10                 6379385   0 +  13272281 I
e punNye1.JH419232              4767720 338 +   5065651 T
e mayZeb1.JH720522               609382   0 -   6649201 I
e hapBur1.JH425491               252157   0 -   1273513 I
e neoBri1.JH422308              3491820   0 -   5414369 I
e araMac1.AOUJ01470298              637   0 -       895 I
e takFla1.KE121866               209731   0 +    220559 I
e fr3.chr10                     9064512   0 +   9126174 I
e ficAlb2.chr4A                19371809   0 +  21182716 I
e anoCar2.chrUn_GL344195          39255 4204 +     59083 I
e pseHum1.KB221209             10759694  18 +  11841479 I
e zonAlb1.KB913045             12575724 5731 +  16390125 I
e colLiv1.KB375822              2439586  31 +   2691611 I
e allMis1.JH739658                38113 134 -    691381 I
e falPer1.KB391026              1266701  11 +   1688145 I
e falChe1.KB397934              1269954  11 -   4640569 I
e macEug2.GL124958                26121   0 -     59456 I
e galGal4.chrUn_AADN03023623       2011   0 -      5081 I
e geoFor1.JH740049               182930   0 -   1550430 I
e melGal1.chr1                 24924577 4226 + 204065131 I
e anaPla1.KB742696              1254472   0 -   1270250 I
e amaVit1.KB277496                 6803  35 -     10329 I
e apaSpi1.KB929104                22324   0 +    818693 I
e cheMyd1.KB605988               134509   0 +    155857 I
e chrPic2.chrUn_KK088237v1      1206822   0 +  22294289 I
e pelSin1.JH211051                23303   0 +    476004 I
e melUnd1.JH556589              7674127 5368 -   7952740 I
e taeGut2.chr28                 3062068   0 +   4963201 I
e pteAle1.KB031146              3117604 133 -   3193751 I

a score=20688.000000
s hg38.chr8_KI270814v1_alt       120711 9 +    141812 tacatgcaa
s panTro4.chr8                 55023192 9 + 143986469 TACATGCAA
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59163790 9 + 153482349 tacatgcaa
i ponAbe2.chr8                 C 0 C 0
s macFas5.chr8                 58364581 9 + 146850525 TACATGCAA
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                 53285121 9 + 139301422 tacatgcaa
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                 33672941 9 + 155834243 TACACACAA
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196              4060165 9 +   9144518 TACAGCCAA
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762              1559538 9 -   1847653 CACATACAA
i otoGar3.GL873762             C 0 C 0
s orcOrc1.KB316915              2906705 9 -  11690531 TAGGTAACA
i orcOrc1.KB316915             I 11 I 5
s equCab2.chr29                10870991 9 +  33672925 TATATAAGA
i equCab2.chr29                C 0 I 225
s cerSim1.JH767738              9903346 9 +  34209287 TATATAATA
i cerSim1.JH767738             C 0 I 5
s myoLuc2.GL429990               232841 9 -   2104649 TACATAAAA
i myoLuc2.GL429990             I 159 C 0
s loxAfr3.scaffold_15          39448347 7 -  55688157 tatacac--
i loxAfr3.scaffold_15          I 7 C 0
s triMan1.JH594766                15072 7 +   6345240 tatacac--
i triMan1.JH594766             I 7 C 0
s sarHar1.chr5_GL861647_random   316676 9 -   4230514 GGCATGTTA
i sarHar1.chr5_GL861647_random C 0 C 0
e vicPac2.KB632521              1177339 0 -   7152218 C
e camFer1.KB018161                 5921 0 -     34802 C
e danRer10.chr19               48218196 5198 -  48790377 I
e ornAna1.Ultra479              3864917 5904 -   6008416 I
e tetNig2.chr10                 6379385 0 +  13272281 I
e punNye1.JH419232              4767720 338 +   5065651 T
e mayZeb1.JH720522               609382 0 -   6649201 I
e hapBur1.JH425491               252157 0 -   1273513 I
e neoBri1.JH422308              3491820 0 -   5414369 I
e araMac1.AOUJ01470298              637 0 -       895 I
e takFla1.KE121866               209731 0 +    220559 I
e fr3.chr10                     9064512 0 +   9126174 I
e ficAlb2.chr4A                19371809 0 +  21182716 I
e anoCar2.chrUn_GL344195          39255 4204 +     59083 I
e pseHum1.KB221209             10759694 18 +  11841479 I
e zonAlb1.KB913045             12575724 5731 +  16390125 I
e colLiv1.KB375822              2439586 31 +   2691611 I
e allMis1.JH739658                38113 134 -    691381 I
e falPer1.KB391026              1266701 11 +   1688145 I
e falChe1.KB397934              1269954 11 -   4640569 I
e macEug2.GL124958                26121 0 -     59456 I
e galGal4.chrUn_AADN03023623       2011 0 -      5081 I
e geoFor1.JH740049               182930 0 -   1550430 I
e melGal1.chr1                 24924577 4226 + 204065131 I
e anaPla1.KB742696              1254472 0 -   1270250 I
e amaVit1.KB277496                 6803 35 -     10329 I
e apaSpi1.KB929104                22324 0 +    818693 I
e cheMyd1.KB605988               134509 0 +    155857 I
e chrPic2.chrUn_KK088237v1      1206822 0 +  22294289 I
e pelSin1.JH211051                23303 0 +    476004 I
e melUnd1.JH556589              7674127 5368 -   7952740 I
e taeGut2.chr28                 3062068 0 +   4963201 I
e nomLeu3.chr18                81379353 0 - 104879549 C
e pteAle1.KB031146              3117604 133 -   3193751 I
e rheMac3.chr8                 61690741 0 + 150158102 C

a score=641150.000000
s hg38.chr8_KI270814v1_alt       120720 219 +    141812 TTTGTTTTTCTCAGC------------------------------------------------------------AG-TGCTTAAAATATGATTGTATTAAAGAGAATCCATAT-AACAAATTTC------------------------------------------------ATAAATAAATTTCAGTGAAT-ATATAGTATGGGATAATA-------TGAGACCACTGAAAGT---AATATCT-ACAAAAGTATGTTGACATATGAAAATGTATTTTGGTGTATCA----GGTGAAGATAACATTCAGTTTGATTACACATACAAACTGAC----TATGT----------------TCTTGCT-
s panTro4.chr8                 55023201 219 + 143986469 TTTGTTTTTCTCAGC------------------------------------------------------------AG-TGCTTAAAATATGATTGTATTAAAGAGAATCCATAT-AACAAATTTC------------------------------------------------ATAAATAAATTTCAGTGAAT-ATATAGTATGGGATAATA-------TGAGACCACTGAAAGT---AATATCT-ACAAAAGTATGTTGACATATGAAAATGTATTTTGGTGTATCA----GGTGAAGATAACATTCAGTTTGATTACACATACAAACTGAC----TATGT----------------TCTTGCT-
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59163799 219 + 153482349 TTTGTTTTTCTCAGC------------------------------------------------------------AC-TGCTTAAAATATGACTGTATTAAAGAGAATCCATAT-AACAAATTTC------------------------------------------------ATAAATAAATTTCAGTGAAT-ATATAGTATGGGATAATA-------TGAGACCACTGAAAGT---AGTATCT-ACAAAAGTATGTTGACATATGAAAATGTATTCTGGTGTATCA----GGTGAAGATAACATTCAGTTTGATTACACATACAAACTGAC----TATGT----------------TCAAGCT-
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                81379353 198 - 104879549 ------------------------------------------------------------------------------------AAGTACCATATTATTAAGAAGAATCCATAT-AATGGCTTTT------------------------------------------------ATAAATACATTTCAGTGAAT-TTACAGCATGGGATAATA-------TGTGACCACTGAAGGTAAAAATATAT-AGAGAAGTA-GGTGACATTTGAAAATGTATTTTGGTGTATCA----AGTGAGGGTAAAGTTCAGTTTGATTATACATACACACAGAC----TACAG----------------TCTTGTG-
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                 61690741 235 + 150158102 --------------CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--------------------------------------------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------------------------------AGATCATG-------TGTGACCACTGAAAGT---AATACCT-ACCGAAGTATGTTGACATGTGAAAATGTATTTTGGTGTATCA----AGTGAAGATGACATTCAGTTTGATTACACACACAAACTGAC----TATGG----------------TCTTGCT-
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                 58364590 219 + 146850525 TTTGTTTTTCTCAGC------------------------------------------------------------AG-TGCTTAAAATATGGTTGTGTTAAGGAGAATCCATAT-AACAAATCTC------------------------------------------------ATAAATAAATTTCAGTAAAT-ATATAGTAAGAGATCATG-------TGTGACCACTGAAAGT---AATACCT-ACCGAAGTATGTTGACATGTGAAAATGTATTTTGGTGTATCA----AGTGAAGATGACATTCAGTTTGATTACACACACAAACTGAC----TATGG----------------TCTTGCT-
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                 53285130 215 + 139301422 tttgtttttctcagc------------------------------------------------------------ag-tgcttaaaatatggttgtgttaaggagaatccatat-aacaaatctc------------------------------------------------ataaataaatttcagtaaat-atatagtaaaatataatg-------tgtaaccactgaaagt---aatacct-accgaagtatgttgacatgtgaaaatgTATTTTGGTGTATCA----GGTGAAGATGACATTCAGTTTGATTACACACACAAACTGAC----TATGG----------------T----CT-
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                 33672950 232 + 155834243 TTT-CTTTTCTGAGC------------------------------------------------------------AT-GGCTTAAAATATCAATGTGTTAAGAAGAATTCATAG-ATTGGCTCTT------------------------------------------------ATAAATACATTTCAGTGAAT-TTATAGCCTGGGTTA----------TGTGAACACTGAAGGCAGAAAAACAT-ACACAAATATGTTGATATTTGAAAATG-ATTTTGGTGTTCAA----A-TGAGAGTAAAGTTCAGTTTGATTATACATACACACAGAC----TATGTATATTGTATGGATGTATATTGTG-
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196              4060174 210 +   9144518 TTTGTTTTTCTCAGT------------------------------------------------------------AC-TGCTTAAAACCTCAGTGTATTAAGAAGAACACATAT-GGTGGATTTT------------------------------------------------AGAACTAAATTTCAGTGCAT-CCATAGGATGGAATA-----------GTAACTGTTGAAGGTGTGACTAGAT-ACAGACTTATTTTGACATGCGAAGATGTACTTTACTATACCA----A--------AAAAATTGTTTTGATTGTACATACACACATAC----TATAC----------------TCCTATT-
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762              1559547 214 -   1847653 TTTGTTTTTCTCAGC------------------------------------------------------------AC-TCCTTAAAATAGCAATGTAT----AAGAATCCATAT-AGTAGATTTT------------------------------------------------GTAGCTAAATTTCAGTGCAT-CCATAGGATGGGATAATA-------GGTAAACACCAAAGGGGGAAATAGAT-ACAATATGATGTTGGTATGTGACAGTGTACTTTTGTATATCT----AGTGAGA--AAAGATCAACTTGACTATACATGGACACTGAC----T--GG----------------TCTGGTG-
i otoGar3.GL873762             C 0 C 0
s orcOrc1.KB316915              2906719 220 -  11690531 TTTGTTGTTCTCAAC------------------------------------------------------------AC-TGCTTAAAATAGCAATGTATTAAGACAAACTCA----AA--GATTTT------------------------------------------------AAAAATAAATTACAGTGTAT-C--TGGTATGGAGTAATA-------TGTGACCATTGAAGGTGG-CATAGATAACAGATGTGTGTTGACCTGCAGAGATGTACTTTGGTAGAACATTGA---GAAAAAAAAAATCAGTTTCCTTATATATAAACACAAGAAGACTATGG----------------TCTTATC-
i orcOrc1.KB316915             I 5 C 0
s cerSim1.JH767738              9903360 229 +  34209287 TTTGTTTTTCTTAGC------------------------------------------------------------AC-TGCTTAAAATAGCAATGTATTAAGAAGAAGTTGTAT-AATGGATTTT------------------------------------------------ATAAATAAATTGCAGTGCAT-CCCTAGGCTGGAAGAATA-------TGTGACCGTTGAAAGTGG-CATAGAT-ACAGATATATGCTGACAGGCAGAGGTGTACTTTGGTAAATAATTAAATGAGAAAAAAAAATCAGTTTGATTATACATACATGCAAACAGAGTATGG----------------TCTTGTG-
i cerSim1.JH767738             I 5 C 0
s myoLuc2.GL429990               232850 212 -   2104649 TTTGTTTTTCTCAGC------------------------------------------------------------AC-TGCTCATAATAGCAGTGTATTAAGAAGAACTCATATAAATGGATTTT------------------------------------------------ATTTCAAAATTA------------TAGGATGGAATAATA-------TATGACCATTGAAGGTGG-TATAGATAAAAGATATATGTTGACATGCAAAGATATACTTTGGTAGTTCA--GAAAGGGAGACAAAAATCACTTTGATTAGCCATACACACAGAC------TGA----------------TCTTATA-
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15          39448354 214 -  55688157 --tatttttcaaagg------------------------------------------------------------gc-tgcttaaaatagcaatatattaaggggaacccgtat-aatagacttc------------------------------------------------ataaataaattgcagtgtac-ccataggacggaacatta-------tgtgctcattgaaGGTGG-CATAGAT-ACA-ATGTATGTTGACCTACAAAAA------TTGGTACATCC-TTAAGTGAGAATAAAA-TCAGTCTGACAATACATATACATTGAC----TATGA----------------TCTTATG-
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                15079 223 +   6345240 tttgtttttcgaagc------------------------------------------------------------ac-tgcttaagatagcaatatattacggagaacccctat-aatagatttt------------------------------------------------ataaataaattgcagtgtac-ctgtaggatggagtatta-------tgcgtccattaaaggtgg-catagat-acagatgtatgttgacatacaaaaatgtattttggtagatca-ctaaatgagaaCAAAA-TCAGTTTGATTATACATACACACTGAC----TATGA----------------TCTTATG-
i triMan1.JH594766             C 0 C 0
s sarHar1.chr5_GL861647_random   316685 217 -   4230514 ------CTTGTGTAC------------------------------------------------------------ATACGTTTTATACATCTGTGTACCTGACAGCACTTGCAG-AGTAAAAGT-------------------------------------------------AGGAGTGGATACGTGAGAACACTAAAGTAAAAAACACTAGAATGTCTGAAACCA---AAGGCCTTCATGGTT-GGCTGATTATCTTTACTGAT-----TTTCTTCTAATGGATAT----GGTGTGATTTACAGGTTAATTAGTTCAGAACATGTATAgat----ttaga----------------tgttttgt
i sarHar1.chr5_GL861647_random C 0 C 0
e vicPac2.KB632521              1177339   0 -   7152218 C
e camFer1.KB018161                 5921   0 -     34802 C
e danRer10.chr19               48218196 5198 -  48790377 I
e ornAna1.Ultra479              3864917 5904 -   6008416 I
e tetNig2.chr10                 6379385   0 +  13272281 I
e punNye1.JH419232              4767720 338 +   5065651 T
e mayZeb1.JH720522               609382   0 -   6649201 I
e hapBur1.JH425491               252157   0 -   1273513 I
e neoBri1.JH422308              3491820   0 -   5414369 I
e araMac1.AOUJ01470298              637   0 -       895 I
e takFla1.KE121866               209731   0 +    220559 I
e fr3.chr10                     9064512   0 +   9126174 I
e ficAlb2.chr4A                19371809   0 +  21182716 I
e anoCar2.chrUn_GL344195          39255 4204 +     59083 I
e pseHum1.KB221209             10759694  18 +  11841479 I
e zonAlb1.KB913045             12575724 5731 +  16390125 I
e colLiv1.KB375822              2439586  31 +   2691611 I
e allMis1.JH739658                38113 134 -    691381 I
e falPer1.KB391026              1266701  11 +   1688145 I
e falChe1.KB397934              1269954  11 -   4640569 I
e macEug2.GL124958                26121   0 -     59456 I
e galGal4.chrUn_AADN03023623       2011   0 -      5081 I
e geoFor1.JH740049               182930   0 -   1550430 I
e melGal1.chr1                 24924577 4226 + 204065131 I
e anaPla1.KB742696              1254472   0 -   1270250 I
e amaVit1.KB277496                 6803  35 -     10329 I
e apaSpi1.KB929104                22324   0 +    818693 I
e cheMyd1.KB605988               134509   0 +    155857 I
e chrPic2.chrUn_KK088237v1      1206822   0 +  22294289 I
e pelSin1.JH211051                23303   0 +    476004 I
e melUnd1.JH556589              7674127 5368 -   7952740 I
e taeGut2.chr28                 3062068   0 +   4963201 I
e equCab2.chr29                10871000 225 +  33672925 I
e pteAle1.KB031146              3117604 133 -   3193751 I

a score=48499.000000
s hg38.chr8_KI270814v1_alt       120939 7 +    141812 ---TTATCTG
s panTro4.chr8                 55023420 7 + 143986469 ---TTATCTG
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59164018 7 + 153482349 ---TTATCTG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                81379551 7 - 104879549 ---TTATCTG
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                 61690976 7 + 150158102 ---TTATCTG
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                 58364809 7 + 146850525 ---TTATCTG
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                 53285345 7 + 139301422 ---TTATCTG
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                 33673182 7 + 155834243 ---TTATCTG
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196              4060384 7 +   9144518 ---TTAGCTG
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762              1559761 7 -   1847653 ---TTAGCTG
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521              1177339 7 -   7152218 ---TTAGCCA
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                 5921 7 -     34802 ---TTAGCCA
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915              2906939 7 -  11690531 ---TTAGCCA
i orcOrc1.KB316915             C 0 C 0
s cerSim1.JH767738              9903589 7 +  34209287 ---TTAGCCA
i cerSim1.JH767738             C 0 C 0
s myoLuc2.GL429990               233062 7 -   2104649 ---TTAGCTA
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15          39448568 7 -  55688157 ---TTAGCCA
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                15302 7 +   6345240 ---TTAGCCA
i triMan1.JH594766             C 0 I 176
s sarHar1.chr5_GL861647_random   316902 7 -   4230514 tgataag---
i sarHar1.chr5_GL861647_random C 0 C 0
e danRer10.chr19               48218196 5198 -  48790377 I
e ornAna1.Ultra479              3864917 5904 -   6008416 I
e tetNig2.chr10                 6379385 0 +  13272281 I
e punNye1.JH419232              4767720 338 +   5065651 T
e mayZeb1.JH720522               609382 0 -   6649201 I
e hapBur1.JH425491               252157 0 -   1273513 I
e neoBri1.JH422308              3491820 0 -   5414369 I
e araMac1.AOUJ01470298              637 0 -       895 I
e takFla1.KE121866               209731 0 +    220559 I
e fr3.chr10                     9064512 0 +   9126174 I
e ficAlb2.chr4A                19371809 0 +  21182716 I
e anoCar2.chrUn_GL344195          39255 4204 +     59083 I
e pseHum1.KB221209             10759694 18 +  11841479 I
e zonAlb1.KB913045             12575724 5731 +  16390125 I
e colLiv1.KB375822              2439586 31 +   2691611 I
e allMis1.JH739658                38113 134 -    691381 I
e falPer1.KB391026              1266701 11 +   1688145 I
e falChe1.KB397934              1269954 11 -   4640569 I
e macEug2.GL124958                26121 0 -     59456 I
e galGal4.chrUn_AADN03023623       2011 0 -      5081 I
e geoFor1.JH740049               182930 0 -   1550430 I
e melGal1.chr1                 24924577 4226 + 204065131 I
e anaPla1.KB742696              1254472 0 -   1270250 I
e amaVit1.KB277496                 6803 35 -     10329 I
e apaSpi1.KB929104                22324 0 +    818693 I
e cheMyd1.KB605988               134509 0 +    155857 I
e chrPic2.chrUn_KK088237v1      1206822 0 +  22294289 I
e pelSin1.JH211051                23303 0 +    476004 I
e melUnd1.JH556589              7674127 5368 -   7952740 I
e taeGut2.chr28                 3062068 0 +   4963201 I
e equCab2.chr29                10871000 225 +  33672925 I
e pteAle1.KB031146              3117604 133 -   3193751 I

a score=193647.000000
s hg38.chr8_KI270814v1_alt       120946 31 +    141812 -AAAATATGTACC-AAATGTGATAAAA-T---TTGTT-
s panTro4.chr8                 55023427 31 + 143986469 -AAAATATGTGCC-AAATGTGATCAAA-T---TTGTT-
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59164025 31 + 153482349 -AAAATATGTACC-AAATGTGATAAAA-T---TTGTT-
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                81379558 31 - 104879549 -AAATTGTGTATG-AAATATGATAAAA-T---TTGTT-
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                 61690983 31 + 150158102 -AAAATATGTACC-AAATGTGATAAAA-T---TTGTT-
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                 58364816 31 + 146850525 -AAAATATGTACC-AAATGTGATAAAA-T---TTGTT-
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                 53285352 31 + 139301422 -AAAATATGTACC-AAATGTGATAAAA-T---TTGTT-
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                 33673189 31 + 155834243 -AAATTATGTACA-AAATATGATAAAA-T---GTGTT-
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196              4060391 31 +   9144518 -AAAATATGTACT-AAATGTGATTACA-T---TTATT-
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762              1559768 32 -   1847653 -AAAATATGTATA-AAATGGGATAAAATT---TTGTT-
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521              1177346 29 -   7152218 -AAAGTATGTACACAAATGTGATGAAA-T---TT----
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                 5928 29 -     34802 -AAAGTATGTACACAAATGTGATGAAA-T---TT----
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915              2906946 32 -  11690531 -AAAATATGTACAAAAATATGATAAAA-TTTGTT----
i orcOrc1.KB316915             C 0 C 0
s cerSim1.JH767738              9903596 31 +  34209287 -Aaaatacataga-aaatgtgataaca-t---ttgtt-
i cerSim1.JH767738             C 0 C 0
s myoLuc2.GL429990               233069 31 -   2104649 -AAAAAATGTGCA-AAATGCGATAAAA-T---TTATT-
i myoLuc2.GL429990             C 0 I 763
s loxAfr3.scaffold_15          39448575 30 -  55688157 -AAAGTTCTTATT-AAA-aaaaccaaa-c---ctgtt-
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                15485 31 +   6345240 -AAAGTATGTATC-AGATGTGATAAAA-G---TTATT-
i triMan1.JH594766             I 176 C 0
s sarHar1.chr5_GL861647_random   316909 33 -   4230514 attattttttatt-aaatttgttttaa-t---attttt
i sarHar1.chr5_GL861647_random C 0 C 0
e danRer10.chr19               48218196 5198 -  48790377 I
e ornAna1.Ultra479              3864917 5904 -   6008416 I
e tetNig2.chr10                 6379385  0 +  13272281 I
e punNye1.JH419232              4767720 338 +   5065651 T
e mayZeb1.JH720522               609382  0 -   6649201 I
e hapBur1.JH425491               252157  0 -   1273513 I
e neoBri1.JH422308              3491820  0 -   5414369 I
e araMac1.AOUJ01470298              637  0 -       895 I
e takFla1.KE121866               209731  0 +    220559 I
e fr3.chr10                     9064512  0 +   9126174 I
e ficAlb2.chr4A                19371809  0 +  21182716 I
e anoCar2.chrUn_GL344195          39255 4204 +     59083 I
e pseHum1.KB221209             10759694 18 +  11841479 I
e zonAlb1.KB913045             12575724 5731 +  16390125 I
e colLiv1.KB375822              2439586 31 +   2691611 I
e allMis1.JH739658                38113 134 -    691381 I
e falPer1.KB391026              1266701 11 +   1688145 I
e falChe1.KB397934              1269954 11 -   4640569 I
e macEug2.GL124958                26121  0 -     59456 I
e galGal4.chrUn_AADN03023623       2011  0 -      5081 I
e geoFor1.JH740049               182930  0 -   1550430 I
e melGal1.chr1                 24924577 4226 + 204065131 I
e anaPla1.KB742696              1254472  0 -   1270250 I
e amaVit1.KB277496                 6803 35 -     10329 I
e apaSpi1.KB929104                22324  0 +    818693 I
e cheMyd1.KB605988               134509  0 +    155857 I
e chrPic2.chrUn_KK088237v1      1206822  0 +  22294289 I
e pelSin1.JH211051                23303  0 +    476004 I
e melUnd1.JH556589              7674127 5368 -   7952740 I
e taeGut2.chr28                 3062068  0 +   4963201 I
e equCab2.chr29                10871000 225 +  33672925 I
e pteAle1.KB031146              3117604 133 -   3193751 I

a score=-42199.000000
s hg38.chr8_KI270814v1_alt       120977 12 +    141812 ATT------------------------------------------------------------------------------TGGGGACA--A
s panTro4.chr8                 55023458 12 + 143986469 ATT------------------------------------------------------------------------------TGGGGACA--A
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59164056 12 + 153482349 ATT------------------------------------------------------------------------------TGGGGACA--A
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                81379589 12 - 104879549 ATT------------------------------------------------------------------------------TGAGGGCA--T
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                 61691014 12 + 150158102 ATT------------------------------------------------------------------------------TTGGGACA--A
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                 58364847 12 + 146850525 ATT------------------------------------------------------------------------------TTGGGACA--A
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                 53285383 12 + 139301422 ATT------------------------------------------------------------------------------TTGGGACA--A
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                 33673220 12 + 155834243 ATT------------------------------------------------------------------------------G--AGGCATTT
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196              4060422  9 +   9144518 TCT------------------------------------------------------------------------------G---GCCA--T
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762              1559800 12 -   1847653 ACT------------------------------------------------------------------------------TCCAGTCT--T
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521              1177375 12 -   7152218 ATT------------------------------------------------------------------------------TCTGAGCA--T
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                 5957 12 -     34802 ATT------------------------------------------------------------------------------TCTGAGCA--T
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915              2906978 12 -  11690531 ATT------------------------------------------------------------------------------TCTGCACA--C
i orcOrc1.KB316915             C 0 C 0
s cerSim1.JH767738              9903627 12 +  34209287 att------------------------------------------------------------------------------tctgagca--t
i cerSim1.JH767738             C 0 C 0
s loxAfr3.scaffold_15          39448605 90 -  55688157 tttgtcgagccgattcagactcagcgacattgtaggacagcgtagaactgcctcatagggtttccaaggagctgctggtggtttaggtg--g
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                15516 12 +   6345240 ATT------------------------------------------------------------------------------TCCAGGTG--T
i triMan1.JH594766             C 0 C 0
s sarHar1.chr5_GL861647_random   316942 10 -   4230514 att------------------------------------------------------------------------------ttaccaa----
i sarHar1.chr5_GL861647_random C 0 C 0
e myoLuc2.GL429990               233100 763 -   2104649 I
e danRer10.chr19               48218196 5198 -  48790377 I
e ornAna1.Ultra479              3864917 5904 -   6008416 I
e tetNig2.chr10                 6379385  0 +  13272281 I
e punNye1.JH419232              4767720 338 +   5065651 T
e mayZeb1.JH720522               609382  0 -   6649201 I
e hapBur1.JH425491               252157  0 -   1273513 I
e neoBri1.JH422308              3491820  0 -   5414369 I
e araMac1.AOUJ01470298              637  0 -       895 I
e takFla1.KE121866               209731  0 +    220559 I
e fr3.chr10                     9064512  0 +   9126174 I
e ficAlb2.chr4A                19371809  0 +  21182716 I
e anoCar2.chrUn_GL344195          39255 4204 +     59083 I
e pseHum1.KB221209             10759694 18 +  11841479 I
e zonAlb1.KB913045             12575724 5731 +  16390125 I
e colLiv1.KB375822              2439586 31 +   2691611 I
e allMis1.JH739658                38113 134 -    691381 I
e falPer1.KB391026              1266701 11 +   1688145 I
e falChe1.KB397934              1269954 11 -   4640569 I
e macEug2.GL124958                26121  0 -     59456 I
e galGal4.chrUn_AADN03023623       2011  0 -      5081 I
e geoFor1.JH740049               182930  0 -   1550430 I
e melGal1.chr1                 24924577 4226 + 204065131 I
e anaPla1.KB742696              1254472  0 -   1270250 I
e amaVit1.KB277496                 6803 35 -     10329 I
e apaSpi1.KB929104                22324  0 +    818693 I
e cheMyd1.KB605988               134509  0 +    155857 I
e chrPic2.chrUn_KK088237v1      1206822  0 +  22294289 I
e pelSin1.JH211051                23303  0 +    476004 I
e melUnd1.JH556589              7674127 5368 -   7952740 I
e taeGut2.chr28                 3062068  0 +   4963201 I
e equCab2.chr29                10871000 225 +  33672925 I
e pteAle1.KB031146              3117604 133 -   3193751 I

a score=2990.000000
s hg38.chr8_KI270814v1_alt       120989  54 +    141812 T-------------------------------------------------------------------------------TGTATTATAATGAACTG---TT---------------------TT---TCCTTTTTAAGA--TTTGTG-------------------------------------ATTTCTTCACTGAG------------
s panTro4.chr8                 55023470  54 + 143986469 T-------------------------------------------------------------------------------TGTATTATAATGAACTG---TT---------------------TT---TCCTTTTTAAGA--TTTGTG-------------------------------------ATTTCTTCACTGAG------------
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59164068  54 + 153482349 T-------------------------------------------------------------------------------TGTATTATAATGAACTG---TT---------------------TT---TCCTTTTTAAGA--TTTGTG-------------------------------------ACTTCTTCACTGAG------------
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                81379601  54 - 104879549 T-------------------------------------------------------------------------------GGTTTTAATATAAAATG---TT---------------------TT---TCCTTGTTATTA--TCTTTG-------------------------------------ATTTCCACATTGAG------------
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                 61691026  54 + 150158102 T-------------------------------------------------------------------------------TGTATTATAATGAACTG---TT---------------------TT---TCCTTTTTATGA--TTTGTG-------------------------------------ATTTCTTCACTAAG------------
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                 58364859  54 + 146850525 T-------------------------------------------------------------------------------TGTATTATAATGAACTG---TT---------------------TT---TCCTTTTTATGA--TTTGTG-------------------------------------ATTTCTTCACTAAG------------
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                 53285395  54 + 139301422 T-------------------------------------------------------------------------------TGTATTATAATGAACTG---TT---------------------TT---TCCTTTTTATGA--TTTGTG-------------------------------------ATTTCTTCACTAAG------------
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                 33673232  51 + 155834243 T-------------------------------------------------------------------------------TTTAATATAA---AATG---TT---------------------AT---TTCTTTGTATTA--TCTTTG-------------------------------------ATTTCTGCATTGAG------------
i calJac3.chr7                 C 0 I 32610
s saiBol1.JH378196              4060431  48 +   9144518 T-------------------------------------------------------------------------------TGTACTATAA------G---TA---------------------AC---TTTTTTTTCCTA--TCTGTG-------------------------------------ATTTCTGCAATGAG------------
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762              1559812  52 -   1847653 T-------------------------------------------------------------------------------TGTGTTATAAGTGAAAT---TT---------------------CT---TTCTTCTCCTTA----TGTG-------------------------------------ATTTCTGCAATGAG------------
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521              1177387  55 -   7152218 T-------------------------------------------------------------------------------TGTATTATGTGTGAAG----TT---------------------CT---TCCTTTTTAAAAAGGCTGTG-------------------------------------ATTTGTACGATGAA------------
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                 5969  55 -     34802 T-------------------------------------------------------------------------------TGTATTGTGTGTGAAG----TT---------------------CT---TCCTTTTTAAAAAGGCTGTG-------------------------------------ATTTGTACGATGAA------------
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915              2906990  91 -  11690531 T-------------------------------------------------------------------------------TATA-----AGTGAAGCTTTCT---------------------TT---TCCTTTTAAAAATATCTGTGgggcttccctggtggcgcagtggttgagagtccacctgcctatgcagggga------------
i orcOrc1.KB316915             C 0 C 0
s cerSim1.JH767738              9903639  59 +  34209287 t-------------------------------------------------------------------------------tgtgttataagtgaatttttct---------------------tt---tccttttttttaaatctatg-------------------------------------atttctacaatgaa------------
i cerSim1.JH767738             C 0 C 0
s myoLuc2.GL429990               233863  52 -   2104649 T-------------------------------------------------------------------------------TGTATTATAACTGAA-----CA---------------------TT---TCCAGTTTAAAAAATC--TG-------------------------------------ATTTTTACAATGAA------------
i myoLuc2.GL429990             I 763 C 0
s loxAfr3.scaffold_15          39448695 127 -  55688157 tggattagaactgccgaccatttggttagcagccaaacgcttaaccgctacaccaccagggctccAAAGTATGTCTAAGATGTGATAAAACTTATTA---TTTCCAGGTGTTTATAAGTGAGTTT---TTCTT------------------------------------------------------------------------------
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                15528  24 +   6345240 T-------------------------------------------------------------------------------TGTATTAAAAGTGAGTT---TT---------------------------TCTT------------------------------------------------------------------------------
i triMan1.JH594766             C 0 C 0
s sarHar1.chr5_GL861647_random   316952  69 -   4230514 -------------------------------------------------------------------------------gttaaatataaaataatt---tt---------------------ttacatttgtttttaaa--tttttg-------------------------------------agttccagatttttttccttcctgtt
i sarHar1.chr5_GL861647_random C 0 C 0
e danRer10.chr19               48218196 5198 -  48790377 I
e ornAna1.Ultra479              3864917 5904 -   6008416 I
e tetNig2.chr10                 6379385   0 +  13272281 I
e punNye1.JH419232              4767720 338 +   5065651 T
e mayZeb1.JH720522               609382   0 -   6649201 I
e hapBur1.JH425491               252157   0 -   1273513 I
e neoBri1.JH422308              3491820   0 -   5414369 I
e araMac1.AOUJ01470298              637   0 -       895 I
e takFla1.KE121866               209731   0 +    220559 I
e fr3.chr10                     9064512   0 +   9126174 I
e ficAlb2.chr4A                19371809   0 +  21182716 I
e anoCar2.chrUn_GL344195          39255 4204 +     59083 I
e pseHum1.KB221209             10759694  18 +  11841479 I
e zonAlb1.KB913045             12575724 5731 +  16390125 I
e colLiv1.KB375822              2439586  31 +   2691611 I
e allMis1.JH739658                38113 134 -    691381 I
e falPer1.KB391026              1266701  11 +   1688145 I
e falChe1.KB397934              1269954  11 -   4640569 I
e macEug2.GL124958                26121   0 -     59456 I
e galGal4.chrUn_AADN03023623       2011   0 -      5081 I
e geoFor1.JH740049               182930   0 -   1550430 I
e melGal1.chr1                 24924577 4226 + 204065131 I
e anaPla1.KB742696              1254472   0 -   1270250 I
e amaVit1.KB277496                 6803  35 -     10329 I
e apaSpi1.KB929104                22324   0 +    818693 I
e cheMyd1.KB605988               134509   0 +    155857 I
e chrPic2.chrUn_KK088237v1      1206822   0 +  22294289 I
e pelSin1.JH211051                23303   0 +    476004 I
e melUnd1.JH556589              7674127 5368 -   7952740 I
e taeGut2.chr28                 3062068   0 +   4963201 I
e equCab2.chr29                10871000 225 +  33672925 I
e pteAle1.KB031146              3117604 133 -   3193751 I

a score=-26784.000000
s hg38.chr8_KI270814v1_alt       121043 13 +    141812 CA----------------GGGGATTGGGG
s panTro4.chr8                 55023524 13 + 143986469 CA----------------GGGGATTGGGG
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59164122 13 + 153482349 CA----------------GGGGACTGGGG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                81379655  6 - 104879549 CA----------------TGTA-------
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                 61691080 13 + 150158102 CA----------------GGGGATTGGGC
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                 58364913 13 + 146850525 CA----------------GGGGATTGGGC
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                 53285449 13 + 139301422 CA----------------GGGGATTGGGC
i chlSab2.chr8                 C 0 C 0
s vicPac2.KB632521              1177442  2 -   7152218 TA---------------------------
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                 6024  2 -     34802 TA---------------------------
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915              2907081  6 -  11690531 tacggg-----------------------
i orcOrc1.KB316915             C 0 I 152
s cerSim1.JH767738              9903698  2 +  34209287 ca---------------------------
i cerSim1.JH767738             C 0 C 0
s myoLuc2.GL429990               233915  2 -   2104649 CA---------------------------
i myoLuc2.GL429990             C 0 C 0
s sarHar1.chr5_GL861647_random   317021 19 -   4230514 ----tacCAGTCCCCTGTTGAGA------
i sarHar1.chr5_GL861647_random C 0 C 0
e danRer10.chr19               48218196 5198 -  48790377 I
e ornAna1.Ultra479              3864917 5904 -   6008416 I
e tetNig2.chr10                 6379385  0 +  13272281 I
e punNye1.JH419232              4767720 338 +   5065651 T
e mayZeb1.JH720522               609382  0 -   6649201 I
e hapBur1.JH425491               252157  0 -   1273513 I
e neoBri1.JH422308              3491820  0 -   5414369 I
e araMac1.AOUJ01470298              637  0 -       895 I
e takFla1.KE121866               209731  0 +    220559 I
e fr3.chr10                     9064512  0 +   9126174 I
e ficAlb2.chr4A                19371809  0 +  21182716 I
e anoCar2.chrUn_GL344195          39255 4204 +     59083 I
e pseHum1.KB221209             10759694 18 +  11841479 I
e zonAlb1.KB913045             12575724 5731 +  16390125 I
e colLiv1.KB375822              2439586 31 +   2691611 I
e allMis1.JH739658                38113 134 -    691381 I
e falPer1.KB391026              1266701 11 +   1688145 I
e falChe1.KB397934              1269954 11 -   4640569 I
e macEug2.GL124958                26121  0 -     59456 I
e galGal4.chrUn_AADN03023623       2011  0 -      5081 I
e geoFor1.JH740049               182930  0 -   1550430 I
e melGal1.chr1                 24924577 4226 + 204065131 I
e anaPla1.KB742696              1254472  0 -   1270250 I
e amaVit1.KB277496                 6803 35 -     10329 I
e apaSpi1.KB929104                22324  0 +    818693 I
e cheMyd1.KB605988               134509  0 +    155857 I
e chrPic2.chrUn_KK088237v1      1206822  0 +  22294289 I
e pelSin1.JH211051                23303  0 +    476004 I
e calJac3.chr7                 33673283 32610 + 155834243 I
e melUnd1.JH556589              7674127 5368 -   7952740 I
e taeGut2.chr28                 3062068  0 +   4963201 I
e equCab2.chr29                10871000 225 +  33672925 I
e triMan1.JH594766                15552  0 +   6345240 C
e loxAfr3.scaffold_15          39448822  0 -  55688157 C
e pteAle1.KB031146              3117604 133 -   3193751 I
e otoGar3.GL873762              1559864  0 -   1847653 C
e saiBol1.JH378196              4060479  0 +   9144518 C

a score=291219.000000
s hg38.chr8_KI270814v1_alt       121056  85 +    141812 ATCT---------------------GT--------------------GGTATATAG--CATATAGCATAA--TTATTACTAATGAAA-TAATCCTTAGGAAGAGCAGAAATATTAATTTTGC---------------------A--GCT-AAAAG---
s panTro4.chr8                 55023537  85 + 143986469 ATCT---------------------GT--------------------GGTATATAG--CATATAGCATAA--TTATTACTAATAAAA-TAATCCTTAGGAAGAGCAGAAATATGAATTTTGC---------------------A--GAT-AAAAG---
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59164135  85 + 153482349 ATCT---------------------GT--------------------GGTATATAG--CATATAGCATAA--TTATTATTAATGAAA-TCATCCTTAGGAAGAGCAGAAATATGAATTTTGC---------------------A--GAT-AAAAA---
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                81379661  78 - 104879549 --CA---------------------AT--------------------GCTAT--------TAGAAAAAGA--TTATTATTAATGAAA-TAGTTTTTGGGAAGAGCAGGAATAT-AATTTTGC---------------------AACAAT-AAAAA---
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                 61691093  87 + 150158102 ATCC---------------------CT--------------------GGCATATAG--CATATAGCATAA--TTATTATTAATGAAA-TAATCCTTAGGAAGTGAAGAACTATTAATTTTGC---------------------ACAGAT-ATAAA---
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                 58364926  87 + 146850525 ATCC---------------------CT--------------------GGCATATAG--CATATAGCATAA--TTATTATTAATGAAA-TAATCCTTAGGAAGTGCAGAAATATGAATTTTGC---------------------ACAGAT-ATAAA---
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                 53285462  87 + 139301422 ATCC---------------------CT--------------------GGCATATAG--CATATAGCATAA--TTATTATTAATGAAA-TAATCCTTAGGAAGTGCAGAAATATGAATTTTGC---------------------ACAGAT-ATAAA---
i chlSab2.chr8                 C 0 C 0
s saiBol1.JH378196              4060479  85 +   9144518 -------------------------CA--------------------TGTATAAAA--GTTATAGTAAAAGCTTGTTATTAATGAAA-TAATCTTTGGGAAATGAGAATATATGAGATTTGC---------------------TCAGAT-AAAAA---
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762              1559864  84 -   1847653 -------------------------CT--------------------TGTATAAAA--CGTCTAGTAAAAGTTTATTATTTATGAAA-TAATCCTTGGGGAGAGCAGGAATGT-GATCTTGC---------------------ACAGAT-AAAAA---
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521              1177444  78 -   7152218 -----------------------------------------------TGTACAAAA--GTTCTAGTAAATGTTTATTATTCATGAAA-TAATCCTGAGAAAGAGCAGGAATATAATTCTT-------------------------AGAT-TTAA----
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                 6026  78 -     34802 -----------------------------------------------TGTACAAAA--ATTCTAGTGAATGTTTATTATTCATGAAA-TAATCCTGAGAAAGAGCAGGAATATGATTCTT-------------------------AGAT-TTAA----
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915              2907239 105 -  11690531 -------------------------aTCTGTGATTCTACAGTGAACATGTACAAAA--ATTCTAGTAAATATTTAGTATTAGTGAAA-TAATCCTGGGAGAGAGCAGGAATATGAATCTTGT---------------------ACAGAT-AAAAA---
i orcOrc1.KB316915             I 152 C 0
s cerSim1.JH767738              9903700  83 +  34209287 -----------------------------------------------tatatAAAA--ATTCTAGTAAAAGTTTATTAACAACGAAA-TAATCTTGAGGAAGAGCAAGAATATGAATCTTGC---------------------ACAGAT-AAAAA---
i cerSim1.JH767738             C 0 C 0
s myoLuc2.GL429990               233917  84 -   2104649 -----------------------------------------------AGTATAGAA--ATTCTAGTAAAAGTATATTATGATTGAAA-TAATCCTGGGGAAGAGCAGGAATATGAATCTTAC---------------------ATAGATAAAAAA---
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15          39448822 110 -  55688157 ATCTGTAATTTCTACAATGAATATACT--------------------TGCataaaatttttttatttaaagtttattaaGAATGAAA-TCATCCTTGGGAA--GTAGGAATATGAATCTTGC---------------------ACAGGT-GAAAA---
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                15552 108 +   6345240 ATCTGTGATTTCTACAATGAACATACT--------------------TGTATAAAA--ATTCTAGTAGAAGCTTAATAATAATGAAA-TCATCCTTGGAAA--CTAGGAATATGAATCTTGC---------------------ACCaac-caaaa---
i triMan1.JH594766             C 0 I 137
s sarHar1.chr5_GL861647_random   317040 103 -   4230514 ----------------------------------------------AGGCACATGG--gaaattatataa--aacttttccATGAAAGTAATACTGGGAAAGA----AAGTGTAGTTCTCTCcccaaaaaattcaagaaaaatatagtt-taaaaaag
i sarHar1.chr5_GL861647_random C 0 C 0
e danRer10.chr19               48218196 5198 -  48790377 I
e ornAna1.Ultra479              3864917 5904 -   6008416 I
e tetNig2.chr10                 6379385   0 +  13272281 I
e punNye1.JH419232              4767720 338 +   5065651 T
e mayZeb1.JH720522               609382   0 -   6649201 I
e hapBur1.JH425491               252157   0 -   1273513 I
e neoBri1.JH422308              3491820   0 -   5414369 I
e araMac1.AOUJ01470298              637   0 -       895 I
e takFla1.KE121866               209731   0 +    220559 I
e fr3.chr10                     9064512   0 +   9126174 I
e ficAlb2.chr4A                19371809   0 +  21182716 I
e anoCar2.chrUn_GL344195          39255 4204 +     59083 I
e pseHum1.KB221209             10759694  18 +  11841479 I
e zonAlb1.KB913045             12575724 5731 +  16390125 I
e colLiv1.KB375822              2439586  31 +   2691611 I
e allMis1.JH739658                38113 134 -    691381 I
e falPer1.KB391026              1266701  11 +   1688145 I
e falChe1.KB397934              1269954  11 -   4640569 I
e macEug2.GL124958                26121   0 -     59456 I
e galGal4.chrUn_AADN03023623       2011   0 -      5081 I
e geoFor1.JH740049               182930   0 -   1550430 I
e melGal1.chr1                 24924577 4226 + 204065131 I
e anaPla1.KB742696              1254472   0 -   1270250 I
e amaVit1.KB277496                 6803  35 -     10329 I
e apaSpi1.KB929104                22324   0 +    818693 I
e cheMyd1.KB605988               134509   0 +    155857 I
e chrPic2.chrUn_KK088237v1      1206822   0 +  22294289 I
e pelSin1.JH211051                23303   0 +    476004 I
e calJac3.chr7                 33673283 32610 + 155834243 I
e melUnd1.JH556589              7674127 5368 -   7952740 I
e taeGut2.chr28                 3062068   0 +   4963201 I
e equCab2.chr29                10871000 225 +  33672925 I
e pteAle1.KB031146              3117604 133 -   3193751 I

a score=51845.000000
s hg38.chr8_KI270814v1_alt       121141 43 +    141812 TAatttctcactttctattt------tta------aatttt------ta-----tttctatGGATT
s panTro4.chr8                 55023622 43 + 143986469 TAATTTCTCACTTTCTATTT------TTA------AATTTT------TA-----TTTCTATGGATT
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59164220 43 + 153482349 TAATTTCTCACTTTCTATTT------TTA------AATTTT------TA-----TTTCTATGGATT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                81379739 44 - 104879549 TAATTTCTCACTTTCCATAT------TTT------AATTAT------TA----TTTTTTGTGGATT
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                 61691180 41 + 150158102 TAATTCCT--CTTCCTATTT------TTA------AATTTT------TA-----TTTCTATGGATT
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                 58365013 41 + 146850525 TAattcct--ctttctattt------tta------aatttt------ta-----tttctatGGATT
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                 53285549 41 + 139301422 TAattcct--ctttctattt------tta------aatttt------ta-----tttctatGGATT
i chlSab2.chr8                 C 0 C 0
s saiBol1.JH378196              4060564 32 +   9144518 TAGTTTCTCACTTTCTG-----------------------T------TA-----TTTTTGTGGTTT
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762              1559948 33 -   1847653 TAATTTCT------TTGTAT------TTA------ATTTTT------TT-----TTGTT----ATT
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521              1177522 45 -   7152218 -AAATTCTCACTATTTTTTTAAAGTTTT---------TTTT------TT-----TTTTTGAGTAGT
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                 6104 43 -     34802 -AAATTCTCACTATTTTTTAAAAA--TT---------TTTT------TG-----TTTTTGAGTAGT
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915              2907344 43 -  11690531 TAATTCCTCACTTTCTAT--------TT---------TTTT------TGGAAGTTTTTCAAGGATT
i orcOrc1.KB316915             C 0 C 0
s cerSim1.JH767738              9903783 42 +  34209287 TAATTTCTCACTTTGTATTA------TT---------TTTT----AATT-----TTTTTGAGGATT
i cerSim1.JH767738             C 0 C 0
s myoLuc2.GL429990               234001 38 -   2104649 TAATTCCTCACT--------------TT---------TTTTAAAAAATG-----TTTTTGAGAATT
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15          39448932 27 -  55688157 TAAT----------CTATCA------AT------------T------TT-----TCTTTGAGGATT
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                15797 36 +   6345240 taaTTTCTCGCTTCCTATCA------GT------------T------TT-----T-TTTGAGGCTT
i triMan1.JH594766             I 137 C 0
s sarHar1.chr5_GL861647_random   317143 48 -   4230514 -tatgctttgatctgtattc------acacacaatcacttc------tt-----tctctgggtatg
i sarHar1.chr5_GL861647_random C 0 C 0
e danRer10.chr19               48218196 5198 -  48790377 I
e ornAna1.Ultra479              3864917 5904 -   6008416 I
e tetNig2.chr10                 6379385  0 +  13272281 I
e punNye1.JH419232              4767720 338 +   5065651 T
e mayZeb1.JH720522               609382  0 -   6649201 I
e hapBur1.JH425491               252157  0 -   1273513 I
e neoBri1.JH422308              3491820  0 -   5414369 I
e araMac1.AOUJ01470298              637  0 -       895 I
e takFla1.KE121866               209731  0 +    220559 I
e fr3.chr10                     9064512  0 +   9126174 I
e ficAlb2.chr4A                19371809  0 +  21182716 I
e anoCar2.chrUn_GL344195          39255 4204 +     59083 I
e pseHum1.KB221209             10759694 18 +  11841479 I
e zonAlb1.KB913045             12575724 5731 +  16390125 I
e colLiv1.KB375822              2439586 31 +   2691611 I
e allMis1.JH739658                38113 134 -    691381 I
e falPer1.KB391026              1266701 11 +   1688145 I
e falChe1.KB397934              1269954 11 -   4640569 I
e macEug2.GL124958                26121  0 -     59456 I
e galGal4.chrUn_AADN03023623       2011  0 -      5081 I
e geoFor1.JH740049               182930  0 -   1550430 I
e melGal1.chr1                 24924577 4226 + 204065131 I
e anaPla1.KB742696              1254472  0 -   1270250 I
e amaVit1.KB277496                 6803 35 -     10329 I
e apaSpi1.KB929104                22324  0 +    818693 I
e cheMyd1.KB605988               134509  0 +    155857 I
e chrPic2.chrUn_KK088237v1      1206822  0 +  22294289 I
e pelSin1.JH211051                23303  0 +    476004 I
e calJac3.chr7                 33673283 32610 + 155834243 I
e melUnd1.JH556589              7674127 5368 -   7952740 I
e taeGut2.chr28                 3062068  0 +   4963201 I
e equCab2.chr29                10871000 225 +  33672925 I
e pteAle1.KB031146              3117604 133 -   3193751 I

a score=223449.000000
s hg38.chr8_KI270814v1_alt       121184 38 +    141812 -----------AGTATAGTCTGTGAACTTTCAGTGTCTTCAGAAGTGAA
s panTro4.chr8                 55023665 38 + 143986469 -----------AGTATAGTCTGTGAACTTTCAGTGTCTTCAGAAGTGAA
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59164263 38 + 153482349 -----------AGTATAGTCTGTGAACTTTTAGTGTCTTCAGAAGTGAA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                81379783 38 - 104879549 -----------AGTATATTCTGTGAACTTTTACCATCTTCAAAAGACAA
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                 61691221 38 + 150158102 -----------AGTATAGTCTGTGAACTTTTAGTGTCTTTGGAAGTGAA
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                 58365054 38 + 146850525 -----------AGTATAGTCTGTGAACTTTTAGTGTCTTTGGAAGTGAA
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                 53285590 38 + 139301422 -----------AGTATAGTCTGTGAACTTTTAGTGTCTTTGGAAGTGAA
i chlSab2.chr8                 C 0 C 0
s saiBol1.JH378196              4060596 38 +   9144518 -----------GGTCTCTTTAGTGAACTTTTAGCCTCTTCTGGAGAAGG
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762              1559981 38 -   1847653 -----------GGCATGGTCTGTGAACTTCTATTCTCTTTATGAGTAAA
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521              1177567 38 -   7152218 -----------GGTATCTTCGGATAACTTTTAGCCTCTTCAGAAGTAAA
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                 6147 38 -     34802 -----------GGTATCTTCAGATAACTTTTAGCCTCTTTAGAAGTAAA
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915              2907387 38 -  11690531 -----------GATATCTTCTGACAACTTTTAACCTCTTCAGAAGTAAA
i orcOrc1.KB316915             C 0 C 0
s cerSim1.JH767738              9903825 38 +  34209287 -----------GATATCTTCTTACAACTTACAGCCTCTTCAGAAGTAAA
i cerSim1.JH767738             C 0 C 0
s myoLuc2.GL429990               234039 38 -   2104649 -----------GGCACCTTCTGACAACTTTTAACCTCTTCAGAAGTAAA
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15          39448959 38 -  55688157 -----------GGTATCTTCTGACAATGTTTAGCTTCTTCAAAAGGAAA
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                15833 38 +   6345240 -----------GGTATCCTCTGCCAATGTTTAGCTTCTTCAGAAGGGAA
i triMan1.JH594766             C 0 C 0
s sarHar1.chr5_GL861647_random   317191 36 -   4230514 -----------gaaaacattttt--agtcttaagtccttcagaataatc
i sarHar1.chr5_GL861647_random C 0 C 0
s allMis1.JH737798                78599 49 +    106177 AGAATAGTTTATGTTACGTCAGTCAGTGTTTTGCCACTTGGGCACAGAA
i allMis1.JH737798             T 1661 C 0
e danRer10.chr19               48218196 5198 -  48790377 I
e ornAna1.Ultra479              3864917 5904 -   6008416 I
e tetNig2.chr10                 6379385  0 +  13272281 I
e punNye1.JH419232              4767720 338 +   5065651 T
e mayZeb1.JH720522               609382  0 -   6649201 I
e hapBur1.JH425491               252157  0 -   1273513 I
e neoBri1.JH422308              3491820  0 -   5414369 I
e araMac1.AOUJ01470298              637  0 -       895 I
e takFla1.KE121866               209731  0 +    220559 I
e fr3.chr10                     9064512  0 +   9126174 I
e ficAlb2.chr4A                19371809  0 +  21182716 I
e anoCar2.chrUn_GL344195          39255 4204 +     59083 I
e pseHum1.KB221209             10759694 18 +  11841479 I
e zonAlb1.KB913045             12575724 5731 +  16390125 I
e colLiv1.KB375822              2439586 31 +   2691611 I
e falPer1.KB391026              1266701 11 +   1688145 I
e falChe1.KB397934              1269954 11 -   4640569 I
e macEug2.GL124958                26121  0 -     59456 I
e galGal4.chrUn_AADN03023623       2011  0 -      5081 I
e geoFor1.JH740049               182930  0 -   1550430 I
e melGal1.chr1                 24924577 4226 + 204065131 I
e anaPla1.KB742696              1254472  0 -   1270250 I
e amaVit1.KB277496                 6803 35 -     10329 I
e apaSpi1.KB929104                22324  0 +    818693 I
e cheMyd1.KB605988               134509  0 +    155857 I
e chrPic2.chrUn_KK088237v1      1206822  0 +  22294289 I
e pelSin1.JH211051                23303  0 +    476004 I
e calJac3.chr7                 33673283 32610 + 155834243 I
e melUnd1.JH556589              7674127 5368 -   7952740 I
e taeGut2.chr28                 3062068  0 +   4963201 I
e equCab2.chr29                10871000 225 +  33672925 I
e pteAle1.KB031146              3117604 133 -   3193751 I

a score=106239.000000
s hg38.chr8_KI270814v1_alt       121222 106 +    141812 GATAA--------ACTTTAT----CTGTG-A-TAGTGGTTTTATATA----------------TGTACA---TATTTTATTAA--ACATAT----------TTTTATTATGTATAG----ATTTATTACAT---ATAT-GCCAATA-ATTACATATTAAT--------
s panTro4.chr8                 55023703 106 + 143986469 GATAA--------ACTTTAT----CTGTG-A-TAGTGGTTTTATATA----------------TGTACa---tattttattaa--acatat----------ttttattatgtatag----atttattacat---atat-gccaata-attatatattaat--------
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59164301 106 + 153482349 GATAA--------ACTTTAT----CTGTG-A-TAGTGGTTTTATATA----------------TGTACA---TACTTTATTAA--ACACGT----------TTTTATTATGTATAG----ATTTATTACAT---ATAT-ACCAATA-ACTATATATTAAT--------
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                81379821 100 - 104879549 TCT-----------TTTTAC----CTGTG-C-TTGTTGATTTACATA----------------TACATA-------TTATTAGGCACATAT----------TTTTATTATATATAG----ATTTATTACAT---ATAT-GTCAATA-ATTATAGATTAA---------
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                 61691259 106 + 150158102 GATAA--------CCTTTAT----CTGTG-A-TAGTAGTTTTATATA----------------TGTACA---TATTTTATTAA--ACACATG---------TTTTATTATGTGTAG----TTTTATTACAT---ATAT-GCCAATA-ATTAAATATTAA---------
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                 58365092 106 + 146850525 GATAA--------CCTTTAT----CTGTG-A-TAGTAGTTTTATATA----------------TGTACA---TATTTTATTAA--ACACATG---------TTTTATTATGTGTAG----TTTTATTACAT---ATAT-GCCAATA-ATTAAATATTAA---------
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                 53285628 107 + 139301422 GATAA--------CCTTTAT----CTGTG-A-TAGTCGTTTTATATA----------------TGTACA---TATTTTATTAA--ACACACG--------TTTTTATTATGTGTAG----TTTTATTACAT---ATAT-GCCAGTA-ATTAAATATTAA---------
i chlSab2.chr8                 C 0 C 0
s saiBol1.JH378196              4060634 106 +   9144518 GGGAA-TC-----CTTTTGT----CTGTG-CTTAAAAGTTTTAT-TA----------------TGAATA---CATTTTATTAT--ATACGTA-----T-GTTTTAATTATATATAG----ATTTACTACAT---ATAT-GCAAA------AAAGATGAA---------
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762              1560019 110 -   1847653 GAGAA-TCG----TTTTTAT----CTGTGCA-TATAAATTTTAT-TA----------------TGTACA---CATTTTATTAC--AGACATG-----T---TTTTATTACATACAG----ATTTATTGGAT---ATAT-GTAAGCA-ATTATAGAGAAA---------
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521              1177605 109 -   7152218 GGGAATTC-----CTTTTAT----CTGTG-C-TTGTAGATTTTACTA----------------GGTATG---TATTTAATTAC--ATACACA-----TGTTTTGGATTATACGTAG----CTTTATTAC-------AT-GTAAATG-ATTATAGATTAA---------
i vicPac2.KB632521             C 0 I 1
s camFer1.KB018161                 6185 116 -     34802 GGGAATTC-----CTTTTAT----CTGTG-C-TTGTAGATTTTACTA----------------GGTATG---TATTTAATTAC--ATACACA-----TGTTTTGGATTATACGTAG----CTTTATTACATGTAATAT-GTAAATG-ATTATAGATTAA---------
i camFer1.KB018161             C 0 I 1
s orcOrc1.KB316915              2907425 113 -  11690531 GGGAA-TC-----TTTTTAT----CCATG-C-CTGTAGATTTTACTA----------------GGTATA---TATTTCGCTAT--ATACAC-------GTTTTTGATTTTGTGTAA----CTTTATTACCTATAATAT-GTAAATG-ATTATAGATTAA---------
i orcOrc1.KB316915             C 0 I 1
s cerSim1.JH767738              9903863 103 +  34209287 GGGAA-TC-----TTTTTAT----CTGTG-C-TTGTTGattttatta----------------tgtata---tttttaattgt--ataa----------ttttttattatatGTAG----CTTTATTACATATAATAC-ATAAA--------TCTATAA---------
i cerSim1.JH767738             C 0 I 1
s myoLuc2.GL429990               234077 107 -   2104649 AGGAA-TC-----TTTTTAT----CTGTG-T-TTATAGAGT---ATA----------------TGTATG---TATCTAATTGT--ACACAT--------TTTTTTACTTTATATAGATTTCTTTATTACATCCTATATAATAAA--------AGGGTAA---------
i myoLuc2.GL429990             C 0 I 715
s loxAfr3.scaffold_15          39448997 112 -  55688157 ------TC-----TTTTTATTACTCTGTG-t-ttatatatattatta----------------tgcatg---ttttttattat--atacata-----tat-ttttattatGTATGG----GTTTGT-GTATGTTATAT-ATAAATG-ATTATAGGTTAA---------
i loxAfr3.scaffold_15          C 0 I 1
s triMan1.JH594766                15871  89 +   6345240 ------TC-----TTTTTATTACAATGTG-A-TTATATATATTAATA----------------TGCATG--------TATTGT--ATACATA-----TAT-TTTTACTATATAAGG----GCATGT---------------------ATTGTAGATTAA---------
i triMan1.JH594766             C 0 I 1
s sarHar1.chr5_GL861647_random   317227 131 -   4230514 CTGGA-TC-----ATTacatta--ctgagaa-tagcaaagtcatttaaagtTCATCATCCTacagcatt---gctattacttt--gtacacag----tatatttcactttgcttga----attcattgagg---attt-tccaggt-ttttctgagaa----------
i sarHar1.chr5_GL861647_random C 0 C 0
s allMis1.JH737798                78648  95 +    106177 C------------TTGCAAT----CTGTT-T-T----GTCTCAAAGA----------------GGTATG------TTTGCCAC--AAACATTACATTACTTCTTTTTTTTGTTTGT----TTGTTTTACCC---A----ATAAAAT-ATTAAA---------------
i allMis1.JH737798             C 0 C 0
s danRer10.chr19               48223394 113 -  48790377 --------GATTAATTTTGT----TTA-A-T-TGAAAATTATAAATA----------------TGTAGAATTTAATTTATTTT--AAA-------------ATAAAATATTTGTAC----TTCCAAATAAT---AAAT-ACAAAAATGTTTCAAATTAA-ATACACTT
i danRer10.chr19               I 5198 C 0
e ornAna1.Ultra479              3864917 5904 -   6008416 I
e tetNig2.chr10                 6379385   0 +  13272281 I
e punNye1.JH419232              4767720 338 +   5065651 T
e mayZeb1.JH720522               609382   0 -   6649201 I
e hapBur1.JH425491               252157   0 -   1273513 I
e neoBri1.JH422308              3491820   0 -   5414369 I
e araMac1.AOUJ01470298              637   0 -       895 I
e takFla1.KE121866               209731   0 +    220559 I
e fr3.chr10                     9064512   0 +   9126174 I
e ficAlb2.chr4A                19371809   0 +  21182716 I
e anoCar2.chrUn_GL344195          39255 4204 +     59083 I
e pseHum1.KB221209             10759694  18 +  11841479 I
e zonAlb1.KB913045             12575724 5731 +  16390125 I
e colLiv1.KB375822              2439586  31 +   2691611 I
e falPer1.KB391026              1266701  11 +   1688145 I
e falChe1.KB397934              1269954  11 -   4640569 I
e macEug2.GL124958                26121   0 -     59456 I
e galGal4.chrUn_AADN03023623       2011   0 -      5081 I
e geoFor1.JH740049               182930   0 -   1550430 I
e melGal1.chr1                 24924577 4226 + 204065131 I
e anaPla1.KB742696              1254472   0 -   1270250 I
e amaVit1.KB277496                 6803  35 -     10329 I
e apaSpi1.KB929104                22324   0 +    818693 I
e cheMyd1.KB605988               134509   0 +    155857 I
e chrPic2.chrUn_KK088237v1      1206822   0 +  22294289 I
e pelSin1.JH211051                23303   0 +    476004 I
e calJac3.chr7                 33673283 32610 + 155834243 I
e melUnd1.JH556589              7674127 5368 -   7952740 I
e taeGut2.chr28                 3062068   0 +   4963201 I
e equCab2.chr29                10871000 225 +  33672925 I
e pteAle1.KB031146              3117604 133 -   3193751 I

a score=-35634.000000
s hg38.chr8_KI270814v1_alt       121328 5 +    141812 ---CATTT
s panTro4.chr8                 55023809 5 + 143986469 ---cattt
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59164407 5 + 153482349 ---CATTT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                81379921 1 - 104879549 -------T
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                 61691365 1 + 150158102 -------T
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                 58365198 1 + 146850525 -------T
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                 53285735 1 + 139301422 -------T
i chlSab2.chr8                 C 0 C 0
s saiBol1.JH378196              4060740 5 +   9144518 ---AATTT
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762              1560129 1 -   1847653 -------T
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521              1177715 5 -   7152218 ---CATTT
i vicPac2.KB632521             I 1 C 0
s camFer1.KB018161                 6302 5 -     34802 ---CATTT
i camFer1.KB018161             I 1 C 0
s orcOrc1.KB316915              2907539 5 -  11690531 ---CATTT
i orcOrc1.KB316915             I 1 C 0
s cerSim1.JH767738              9903967 5 +  34209287 ---CATTT
i cerSim1.JH767738             I 1 C 0
s loxAfr3.scaffold_15          39449110 4 -  55688157 ---CGTT-
i loxAfr3.scaffold_15          I 1 I 4
s triMan1.JH594766                15961 4 +   6345240 ---CGTT-
i triMan1.JH594766             I 1 I 4
s sarHar1.chr5_GL861647_random   317358 5 -   4230514 ---cattc
i sarHar1.chr5_GL861647_random C 0 C 0
s allMis1.JH737798                78743 4 +    106177 ----GTTG
i allMis1.JH737798             C 0 I 1
s danRer10.chr19               48223507 5 -  48790377 CAAAA---
i danRer10.chr19               C 0 C 0
e myoLuc2.GL429990               234184 715 -   2104649 I
e ornAna1.Ultra479              3864917 5904 -   6008416 I
e tetNig2.chr10                 6379385 0 +  13272281 I
e punNye1.JH419232              4767720 338 +   5065651 T
e mayZeb1.JH720522               609382 0 -   6649201 I
e hapBur1.JH425491               252157 0 -   1273513 I
e neoBri1.JH422308              3491820 0 -   5414369 I
e araMac1.AOUJ01470298              637 0 -       895 I
e takFla1.KE121866               209731 0 +    220559 I
e fr3.chr10                     9064512 0 +   9126174 I
e ficAlb2.chr4A                19371809 0 +  21182716 I
e anoCar2.chrUn_GL344195          39255 4204 +     59083 I
e pseHum1.KB221209             10759694 18 +  11841479 I
e zonAlb1.KB913045             12575724 5731 +  16390125 I
e colLiv1.KB375822              2439586 31 +   2691611 I
e falPer1.KB391026              1266701 11 +   1688145 I
e falChe1.KB397934              1269954 11 -   4640569 I
e macEug2.GL124958                26121 0 -     59456 I
e galGal4.chrUn_AADN03023623       2011 0 -      5081 I
e geoFor1.JH740049               182930 0 -   1550430 I
e melGal1.chr1                 24924577 4226 + 204065131 I
e anaPla1.KB742696              1254472 0 -   1270250 I
e amaVit1.KB277496                 6803 35 -     10329 I
e apaSpi1.KB929104                22324 0 +    818693 I
e cheMyd1.KB605988               134509 0 +    155857 I
e chrPic2.chrUn_KK088237v1      1206822 0 +  22294289 I
e pelSin1.JH211051                23303 0 +    476004 I
e calJac3.chr7                 33673283 32610 + 155834243 I
e melUnd1.JH556589              7674127 5368 -   7952740 I
e taeGut2.chr28                 3062068 0 +   4963201 I
e equCab2.chr29                10871000 225 +  33672925 I
e pteAle1.KB031146              3117604 133 -   3193751 I

a score=183863.000000
s hg38.chr8_KI270814v1_alt       121333 39 +    141812 TAGTTTAGTGT----------TATTATTATGAAAAT----------------AAAAA-TAGTGAAT
s panTro4.chr8                 55023814 39 + 143986469 tagtttagtgt----------tattattatgaaaat----------------aaaaa-taGTGAAT
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59164412 39 + 153482349 TAGTTTAGTGT----------TATTATTATGAAAAT----------------AAAAA-TAGTGAAT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                81379922 38 - 104879549 TAGTGTAGTTT----------TATTATTAAGAAAAT-----------------AAAA-TAGAAAAT
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                 61691366 39 + 150158102 CAGTTTAGTGT----------TATTATTATGAAAAT----------------AAAAA-TAGTGAAT
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                 58365199 39 + 146850525 CAGTTTAGTGT----------TATTATTATGAAAAT----------------AAAAA-TAGTGAAT
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                 53285736 39 + 139301422 CAGTTTAGTGT----------TATTATTATGAAAAT----------------AAAAA-TAGTGAAT
i chlSab2.chr8                 C 0 C 0
s saiBol1.JH378196              4060745 39 +   9144518 TAGTTCAGTTA----------TGTTTTTATGAAAAT----------------AAAAA-TAGCTAAT
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762              1560130 41 -   1847653 CATTTTAGTTT---------GTATCCTTATGAAAAT----------------AAAAAGTAGCAAGT
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521              1177720 39 -   7152218 TACTTTAGTTA----------CATTCTTATGGAAAT----------------AAAAA-TAGCAAAC
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                 6307 39 -     34802 TACTTTAGTTG----------CATTCTTATGGAAAT----------------AAAAA-TAGTAAAT
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915              2907544 39 -  11690531 TACTTTA-TTG----------CAGTCTTATGAAAATA---------------AAAAA-TAGTAAAT
i orcOrc1.KB316915             C 0 C 0
s cerSim1.JH767738              9903972 40 +  34209287 TATTTTAGTTG----------TGTCCTTATGAAAATG---------------AAAAA-TAGTAAAT
i cerSim1.JH767738             C 0 C 0
s myoLuc2.GL429990               234899 40 -   2104649 TAATTTAGTTA----------TGTTCTTATTACAATA---------------AAACA-TAGCAAAT
i myoLuc2.GL429990             I 715 C 0
s loxAfr3.scaffold_15          39449118 49 -  55688157 TACTCTGGGTACTAAAGTACATATTCACATAGGAAC----------------AATGA-TAGAAAAT
i loxAfr3.scaffold_15          I 4 C 0
s triMan1.JH594766                15969 51 +   6345240 TACTCTGGGTACTAAAGTACATATCCACATAGGAACA--------------TAATGA-TATAAAAT
i triMan1.JH594766             I 4 C 0
s sarHar1.chr5_GL861647_random   317363 53 -   4230514 --tgCTATTGA----------TGTGATTATTAAAATcccatttaaatataataatga-taatggat
i sarHar1.chr5_GL861647_random C 0 C 0
s allMis1.JH737798                78748 39 +    106177 TAGTTTCTTGT----------TGTTAGCCTGCTAAT----------------AAACA-TTGTAAAT
i allMis1.JH737798             I 1 I 358
s danRer10.chr19               48223512 35 -  48790377 TAAATTAATAT----------GTATAATACTAAAAT----------------AAAAA-TAAT----
i danRer10.chr19               C 0 C 0
e ornAna1.Ultra479              3864917 5904 -   6008416 I
e tetNig2.chr10                 6379385  0 +  13272281 I
e punNye1.JH419232              4767720 338 +   5065651 T
e mayZeb1.JH720522               609382  0 -   6649201 I
e hapBur1.JH425491               252157  0 -   1273513 I
e neoBri1.JH422308              3491820  0 -   5414369 I
e araMac1.AOUJ01470298              637  0 -       895 I
e takFla1.KE121866               209731  0 +    220559 I
e fr3.chr10                     9064512  0 +   9126174 I
e ficAlb2.chr4A                19371809  0 +  21182716 I
e anoCar2.chrUn_GL344195          39255 4204 +     59083 I
e pseHum1.KB221209             10759694 18 +  11841479 I
e zonAlb1.KB913045             12575724 5731 +  16390125 I
e colLiv1.KB375822              2439586 31 +   2691611 I
e falPer1.KB391026              1266701 11 +   1688145 I
e falChe1.KB397934              1269954 11 -   4640569 I
e macEug2.GL124958                26121  0 -     59456 I
e galGal4.chrUn_AADN03023623       2011  0 -      5081 I
e geoFor1.JH740049               182930  0 -   1550430 I
e melGal1.chr1                 24924577 4226 + 204065131 I
e anaPla1.KB742696              1254472  0 -   1270250 I
e amaVit1.KB277496                 6803 35 -     10329 I
e apaSpi1.KB929104                22324  0 +    818693 I
e cheMyd1.KB605988               134509  0 +    155857 I
e chrPic2.chrUn_KK088237v1      1206822  0 +  22294289 I
e pelSin1.JH211051                23303  0 +    476004 I
e calJac3.chr7                 33673283 32610 + 155834243 I
e melUnd1.JH556589              7674127 5368 -   7952740 I
e taeGut2.chr28                 3062068  0 +   4963201 I
e equCab2.chr29                10871000 225 +  33672925 I
e pteAle1.KB031146              3117604 133 -   3193751 I

a score=-81283.000000
s hg38.chr8_KI270814v1_alt       121372 46 +    141812 ATAA---GTAA----CTATTACCATTG----------CAAAAAT-----ATCACTTTATT------TGTAGC--TG
s panTro4.chr8                 55023853 46 + 143986469 ATAA---GTAA----CTATTACCATTG----------CAAAAAT-----ACCACTTTATT------TGTAGC--TG
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59164451 46 + 153482349 ATAA---GTAA----CTATTACCATTG----------CAAAAAT-----ACTGCTTTATT------TGTAGC--TG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                81379960 24 - 104879549 ATAA---GT-------------------------------------------GCTTTATT------TATAGCAGTT
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                 61691405 46 + 150158102 ATAA---GTAA----CTATTACCATTG----------TGAAAAT-----ACTACTTTATT------TGTATC--TG
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                 58365238 46 + 146850525 ATAA---GTAA----CTATTACCATTG----------TGAAAAT-----ACTACTTTATT------TGTATC--TG
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                 53285775 46 + 139301422 ATAA---GTAA----CTATTACCATTG----------TGAAAAT-----ACTACTTTATT------TGTATC--TG
i chlSab2.chr8                 C 0 C 0
s saiBol1.JH378196              4060784 43 +   9144518 ATAA---GTGA----TTATTACTATTG----------TAAAAGT-----ATTGCTTTATT------T---TC--TG
i saiBol1.JH378196             C 0 I 8
s otoGar3.GL873762              1560171 43 -   1847653 ATAA---ATGA----TTATTAGTATTG----------CAAAAGT-----ATTGCTTTACT------T---TC--TG
i otoGar3.GL873762             C 0 I 8
s vicPac2.KB632521              1177759 44 -   7152218 ATAA---ATTA----TTAGTACTATTG----------CAAAAGTTTG-TAAAGTTTTTGT------TG--------
i vicPac2.KB632521             C 0 I 4
s camFer1.KB018161                 6346 44 -     34802 ATAA---ATTA----TTATTACTATTG----------CAAAAGTTTG-TAAAGTTTTTGT------TG--------
i camFer1.KB018161             C 0 I 4
s orcOrc1.KB316915              2907583 47 -  11690531 CTAAGTGGTGA----TTATTACTATTG----------CAAAAGTTTA-TAGAGTTTTAGT------TG--------
i orcOrc1.KB316915             C 0 I 4
s cerSim1.JH767738              9904012 45 +  34209287 ATAAGTGATGA----TTATTACTATTG----------CAAAAGTT---TAAAATTGTAGT------TG--------
i cerSim1.JH767738             C 0 I 41
s myoLuc2.GL429990               234939 30 -   2104649 AT-----GTTA----CTATTACTATTG----------CAAAAGT--------ATTGC-------------------
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15          39449167 23 -  55688157 GAGA---ATTGTATTTTATCAGTCTT--------------------------------------------------
i loxAfr3.scaffold_15          C 0 I 1
s triMan1.JH594766                16020 23 +   6345240 GATA---ATTGTATTTTATCAGTTTT--------------------------------------------------
i triMan1.JH594766             C 0 I 1
s sarHar1.chr5_GL861647_random   317416 48 -   4230514 ATGA---GTGT----AGGTAACCATTGActtaaaatacaaatgttttctaaaatt---------------------
i sarHar1.chr5_GL861647_random C 0 C 0
s danRer10.chr19               48223547 42 -  48790377 -------ATTG----ATAATAATTTTA----------AAAAATG-----CACACCCTAATAACAAATG--------
i danRer10.chr19               C 0 C 0
e ornAna1.Ultra479              3864917 5904 -   6008416 I
e tetNig2.chr10                 6379385  0 +  13272281 I
e punNye1.JH419232              4767720 338 +   5065651 T
e mayZeb1.JH720522               609382  0 -   6649201 I
e hapBur1.JH425491               252157  0 -   1273513 I
e neoBri1.JH422308              3491820  0 -   5414369 I
e araMac1.AOUJ01470298              637  0 -       895 I
e takFla1.KE121866               209731  0 +    220559 I
e fr3.chr10                     9064512  0 +   9126174 I
e ficAlb2.chr4A                19371809  0 +  21182716 I
e anoCar2.chrUn_GL344195          39255 4204 +     59083 I
e pseHum1.KB221209             10759694 18 +  11841479 I
e zonAlb1.KB913045             12575724 5731 +  16390125 I
e colLiv1.KB375822              2439586 31 +   2691611 I
e allMis1.JH737798                78787 358 +    106177 I
e falPer1.KB391026              1266701 11 +   1688145 I
e falChe1.KB397934              1269954 11 -   4640569 I
e macEug2.GL124958                26121  0 -     59456 I
e galGal4.chrUn_AADN03023623       2011  0 -      5081 I
e geoFor1.JH740049               182930  0 -   1550430 I
e melGal1.chr1                 24924577 4226 + 204065131 I
e anaPla1.KB742696              1254472  0 -   1270250 I
e amaVit1.KB277496                 6803 35 -     10329 I
e apaSpi1.KB929104                22324  0 +    818693 I
e cheMyd1.KB605988               134509  0 +    155857 I
e chrPic2.chrUn_KK088237v1      1206822  0 +  22294289 I
e pelSin1.JH211051                23303  0 +    476004 I
e calJac3.chr7                 33673283 32610 + 155834243 I
e melUnd1.JH556589              7674127 5368 -   7952740 I
e taeGut2.chr28                 3062068  0 +   4963201 I
e equCab2.chr29                10871000 225 +  33672925 I
e pteAle1.KB031146              3117604 133 -   3193751 I

a score=-40774.000000
s hg38.chr8_KI270814v1_alt       121418  5 +    141812 --------------TTTTA
s panTro4.chr8                 55023899  5 + 143986469 --------------TTTTA
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59164497  5 + 153482349 --------------TTTTA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                81379984  5 - 104879549 --------------TTTTT
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                 61691451  5 + 150158102 --------------TTTTT
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                 58365284  5 + 146850525 --------------TTTTT
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                 53285821  5 + 139301422 --------------TTTTT
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                 33705893  5 + 155834243 --------------tcTTT
i calJac3.chr7                 I 32610 C 0
s saiBol1.JH378196              4060835  5 +   9144518 --------------CTTTT
i saiBol1.JH378196             I 8 C 0
s otoGar3.GL873762              1560222  5 -   1847653 --------------CTTTT
i otoGar3.GL873762             I 8 C 0
s vicPac2.KB632521              1177807  4 -   7152218 --------------CTTA-
i vicPac2.KB632521             I 4 I 2
s camFer1.KB018161                 6394  4 -     34802 --------------CTTA-
i camFer1.KB018161             I 4 I 2
s orcOrc1.KB316915              2907634  4 -  11690531 --------------CTTa-
i orcOrc1.KB316915             I 4 I 2
s cerSim1.JH767738              9904098  4 +  34209287 --------------ATTA-
i cerSim1.JH767738             I 41 I 24
s myoLuc2.GL429990               234969  4 -   2104649 --------------TTTA-
i myoLuc2.GL429990             C 0 I 19
s loxAfr3.scaffold_15          39449191  4 -  55688157 --------------TTGA-
i loxAfr3.scaffold_15          I 1 C 0
s triMan1.JH594766                16044  4 +   6345240 --------------TTTA-
i triMan1.JH594766             I 1 C 0
s sarHar1.chr5_GL861647_random   317464  1 -   4230514 ------------------a
i sarHar1.chr5_GL861647_random C 0 I 4
s danRer10.chr19               48223589 14 -  48790377 CAGAAATGCAACAA-----
i danRer10.chr19               C 0 C 0
e ornAna1.Ultra479              3864917 5904 -   6008416 I
e tetNig2.chr10                 6379385  0 +  13272281 I
e punNye1.JH419232              4767720 338 +   5065651 T
e mayZeb1.JH720522               609382  0 -   6649201 I
e hapBur1.JH425491               252157  0 -   1273513 I
e neoBri1.JH422308              3491820  0 -   5414369 I
e araMac1.AOUJ01470298              637  0 -       895 I
e takFla1.KE121866               209731  0 +    220559 I
e fr3.chr10                     9064512  0 +   9126174 I
e ficAlb2.chr4A                19371809  0 +  21182716 I
e anoCar2.chrUn_GL344195          39255 4204 +     59083 I
e pseHum1.KB221209             10759694 18 +  11841479 I
e zonAlb1.KB913045             12575724 5731 +  16390125 I
e colLiv1.KB375822              2439586 31 +   2691611 I
e allMis1.JH737798                78787 358 +    106177 I
e falPer1.KB391026              1266701 11 +   1688145 I
e falChe1.KB397934              1269954 11 -   4640569 I
e macEug2.GL124958                26121  0 -     59456 I
e galGal4.chrUn_AADN03023623       2011  0 -      5081 I
e geoFor1.JH740049               182930  0 -   1550430 I
e melGal1.chr1                 24924577 4226 + 204065131 I
e anaPla1.KB742696              1254472  0 -   1270250 I
e amaVit1.KB277496                 6803 35 -     10329 I
e apaSpi1.KB929104                22324  0 +    818693 I
e cheMyd1.KB605988               134509  0 +    155857 I
e chrPic2.chrUn_KK088237v1      1206822  0 +  22294289 I
e pelSin1.JH211051                23303  0 +    476004 I
e melUnd1.JH556589              7674127 5368 -   7952740 I
e taeGut2.chr28                 3062068  0 +   4963201 I
e equCab2.chr29                10871000 225 +  33672925 I
e pteAle1.KB031146              3117604 133 -   3193751 I

a score=62459.000000
s hg38.chr8_KI270814v1_alt       121423 4 +    141812 AAAA
s panTro4.chr8                 55023904 4 + 143986469 AAAA
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59164502 4 + 153482349 AAAA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                81379989 4 - 104879549 AAGG
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                 61691456 4 + 150158102 AAAA
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                 58365289 4 + 146850525 AAAA
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                 53285826 4 + 139301422 AAAA
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                 33705898 4 + 155834243 AAGA
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196              4060840 4 +   9144518 AAAA
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762              1560227 4 -   1847653 AAAA
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521              1177813 4 -   7152218 AAAA
i vicPac2.KB632521             I 2 I 67
s camFer1.KB018161                 6400 4 -     34802 AAAA
i camFer1.KB018161             I 2 I 49
s orcOrc1.KB316915              2907640 4 -  11690531 aaaa
i orcOrc1.KB316915             I 2 I 3213
s equCab2.chr29                10871225 4 +  33672925 aaaa
i equCab2.chr29                I 225 C 0
s cerSim1.JH767738              9904126 4 +  34209287 AAAA
i cerSim1.JH767738             I 24 C 0
s myoLuc2.GL429990               234992 4 -   2104649 AAAA
i myoLuc2.GL429990             I 19 C 0
s loxAfr3.scaffold_15          39449195 4 -  55688157 AAAA
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                16048 4 +   6345240 AAAA
i triMan1.JH594766             C 0 C 0
s sarHar1.chr5_GL861647_random   317469 4 -   4230514 aaaa
i sarHar1.chr5_GL861647_random I 4 C 0
s danRer10.chr19               48223603 4 -  48790377 AAAA
i danRer10.chr19               C 0 C 0
e ornAna1.Ultra479              3864917 5904 -   6008416 I
e tetNig2.chr10                 6379385 0 +  13272281 I
e punNye1.JH419232              4767720 338 +   5065651 T
e mayZeb1.JH720522               609382 0 -   6649201 I
e hapBur1.JH425491               252157 0 -   1273513 I
e neoBri1.JH422308              3491820 0 -   5414369 I
e araMac1.AOUJ01470298              637 0 -       895 I
e takFla1.KE121866               209731 0 +    220559 I
e fr3.chr10                     9064512 0 +   9126174 I
e ficAlb2.chr4A                19371809 0 +  21182716 I
e anoCar2.chrUn_GL344195          39255 4204 +     59083 I
e pseHum1.KB221209             10759694 18 +  11841479 I
e zonAlb1.KB913045             12575724 5731 +  16390125 I
e colLiv1.KB375822              2439586 31 +   2691611 I
e allMis1.JH737798                78787 358 +    106177 I
e falPer1.KB391026              1266701 11 +   1688145 I
e falChe1.KB397934              1269954 11 -   4640569 I
e macEug2.GL124958                26121 0 -     59456 I
e galGal4.chrUn_AADN03023623       2011 0 -      5081 I
e geoFor1.JH740049               182930 0 -   1550430 I
e melGal1.chr1                 24924577 4226 + 204065131 I
e anaPla1.KB742696              1254472 0 -   1270250 I
e amaVit1.KB277496                 6803 35 -     10329 I
e apaSpi1.KB929104                22324 0 +    818693 I
e cheMyd1.KB605988               134509 0 +    155857 I
e chrPic2.chrUn_KK088237v1      1206822 0 +  22294289 I
e pelSin1.JH211051                23303 0 +    476004 I
e melUnd1.JH556589              7674127 5368 -   7952740 I
e taeGut2.chr28                 3062068 0 +   4963201 I
e pteAle1.KB031146              3117604 133 -   3193751 I

a score=210455.000000
s hg38.chr8_KI270814v1_alt       121427 31 +    141812 TATTA---------AACTTCCC------------------AACTGTATTTATTCATTT----
s panTro4.chr8                 55023908 31 + 143986469 TATTA---------AACTTCCC------------------AACTGTATTTATTCATTT----
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59164506 31 + 153482349 TATTA---------AACTTCCC------------------AACCCTATTTATTCATTT----
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                81379993 31 - 104879549 TATTG---------AACTTCTC------------------AAATGTATTTATCCTTTT----
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                 61691460 31 + 150158102 TATAA---------AACTTCCC------------------AACTGCATTTATTCATTT----
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                 58365293 31 + 146850525 TATAA---------AACTTCCC------------------AACTGCATTTATTCATTT----
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                 53285830 31 + 139301422 TATTA---------AACTTCCC------------------AACTGCATTTATTCATTT----
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                 33705902 30 + 155834243 TACTG---------AACTTCCC------------------AACTGTATTTAT-CATTG----
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196              4060844 31 +   9144518 TGTTG---------AACTCCCT------------------AACTGTATTTTTCCATTT----
i saiBol1.JH378196             C 0 I 305
s otoGar3.GL873762              1560231 30 -   1847653 TATTG---------AACT-ATC------------------AACTGTATTTATTCCTTC----
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521              1177884 40 -   7152218 TCTTATAAAGACTGAACCCTTC------------------AACTATATTTCTTCATTC----
i vicPac2.KB632521             I 67 C 0
s camFer1.KB018161                 6453 38 -     34802 TATTATAAAAAC--AACCCTCC------------------AACTATATTTCTTCATTC----
i camFer1.KB018161             I 49 C 0
s orcOrc1.KB316915              2910857 31 -  11690531 TATTG---------AACTCTCC------------------AGTTATGTTTATCCATTG----
i orcOrc1.KB316915             I 3213 C 0
s equCab2.chr29                10871229 31 +  33672925 aaTTA---------AGTTCTCC------------------AACTGTGTTTGTCCATTC----
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738              9904130 31 +  34209287 TATTG---------AGTTCTAC------------------AACTGTATTTATCCATTC----
i cerSim1.JH767738             C 0 C 0
s myoLuc2.GL429990               234996 31 -   2104649 TATTG---------AACTCTCC------------------AACTAAATTTATTCATTC----
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15          39449199 31 -  55688157 TATTG---------AACCCCTC------------------AACTGAAAATATCTGTTC----
i loxAfr3.scaffold_15          C 0 I 11
s triMan1.JH594766                16052 31 +   6345240 TATTA---------AACCCCCC------------------AACTGAATTTATCCGTTC----
i triMan1.JH594766             C 0 I 11
s sarHar1.chr5_GL861647_random   317473 47 -   4230514 --caa---------aatcctacagccatgacagttaaaaaaactattagtaCCTATTC----
i sarHar1.chr5_GL861647_random C 0 I 15
s danRer10.chr19               48223607 31 -  48790377 AATCG---------AATT----------------------AAATAAATTTTAACATTAATAT
i danRer10.chr19               C 0 C 0
e ornAna1.Ultra479              3864917 5904 -   6008416 I
e tetNig2.chr10                 6379385  0 +  13272281 I
e punNye1.JH419232              4767720 338 +   5065651 T
e mayZeb1.JH720522               609382  0 -   6649201 I
e hapBur1.JH425491               252157  0 -   1273513 I
e neoBri1.JH422308              3491820  0 -   5414369 I
e araMac1.AOUJ01470298              637  0 -       895 I
e takFla1.KE121866               209731  0 +    220559 I
e fr3.chr10                     9064512  0 +   9126174 I
e ficAlb2.chr4A                19371809  0 +  21182716 I
e anoCar2.chrUn_GL344195          39255 4204 +     59083 I
e pseHum1.KB221209             10759694 18 +  11841479 I
e zonAlb1.KB913045             12575724 5731 +  16390125 I
e colLiv1.KB375822              2439586 31 +   2691611 I
e allMis1.JH737798                78787 358 +    106177 I
e falPer1.KB391026              1266701 11 +   1688145 I
e falChe1.KB397934              1269954 11 -   4640569 I
e macEug2.GL124958                26121  0 -     59456 I
e galGal4.chrUn_AADN03023623       2011  0 -      5081 I
e geoFor1.JH740049               182930  0 -   1550430 I
e melGal1.chr1                 24924577 4226 + 204065131 I
e anaPla1.KB742696              1254472  0 -   1270250 I
e amaVit1.KB277496                 6803 35 -     10329 I
e apaSpi1.KB929104                22324  0 +    818693 I
e cheMyd1.KB605988               134509  0 +    155857 I
e chrPic2.chrUn_KK088237v1      1206822  0 +  22294289 I
e pelSin1.JH211051                23303  0 +    476004 I
e melUnd1.JH556589              7674127 5368 -   7952740 I
e taeGut2.chr28                 3062068  0 +   4963201 I
e pteAle1.KB031146              3117604 133 -   3193751 I

a score=1024668.000000
s hg38.chr8_KI270814v1_alt       121458 187 +    141812 -----TTAAAATCTATTTATT---C--------ATCAAATACAAGCTGAATA----------CCTGT---------TA-TGTAAAAGGCACAT----TATAC-----------------TAACTA--TCAAGACCCTT----CCATTCTTAAAAAT-TTCATGTGTACCTGCCCACCCTGAGCAAGCTGAG-AGATTTAAAATTAGAGAAT-TAGGACTG-AATCTCAACTGAAGCTTGTCCTCTCATCTTTC----A
s panTro4.chr8                 55023939 191 + 143986469 -----TTAAAATCTATTTATT---C--------ATCAAATACAAGCTGAATA----------CCTGT---------TA-TGTAAAAGACACAT----TATAC-----------------TAACTA--TCAAGACCCTT----CCATTCTTAAAAAT-TTCATGTGTACCTGCCCAGCCTGAGCAAGCTGAG-AGATTTAAAATTAGAGAAT-TAGGACTG-AATCTCAACTGAAGCTTGTCCTCTCATCTTTCAAAAA
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59164537 185 + 153482349 -----TTAAAATCTATTTATT---C--------ATCAAATATAAGCTGAATA----------CCTGT---------TA-TGTAAAAGACACAT----TATAC-----------------TAGCTC--TCAAGACCCTT----CCATTCTTAAAAAT-TTCATGTGTACCTGCCCAGCCTGAGCAAGCTGAG-AGATTTAAAATTAGAGAAT-TATGACTG-AATCTCAACTGAAGCTTGTCCTCTCATCTTT------
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                81380024 172 - 104879549 ---------AATCAATTT---------------ATCACATGTAAACTGAATG----------CCTAT---------TA-TGTAGAAGATACAT--------------------------TAACTC--TCAAGATCCTT----TCATCCCTAAAAAT-TTCACATTTACCTGCTCAGCCTTAGCAAAGTGAG-AGATTTAAAGTTGGAGTAC-TAGGACTG-AATCTCAACTGAAGCTTTTCCTCTCATCTTT------
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                 61691491 186 + 150158102 -----AAAAAATCTATTTATT---C--------ATCAAATATAAACTGAATA----------CTTGT---------TA-TGTAAAAGACACAT----TATAA-----------------TAACTA--TCAACACCCTT----CTATTCTTAAAAAT-TTCATGTGTACCTGCCTGGCCTGAGCAAGCTGAG-AGATTTAAAATTAGAGAAT-GAGGAATG-AGTCTCAACTGAAGCTTGTCCTCTCATCTTTC-----
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                 58365324 186 + 146850525 -----TAAAAATCTATTTATT---C--------ATCAAATATAAACTGAATA----------CTTGT---------TA-TGTAAAAGACACAT----TATAA-----------------TAACTA--TCAACACCCTT----CTATTCTTAAAAAT-TTCATGTGTACCTGCCTGGCCTGAGCAAGCTGAG-AGATTTAAAATTAGAGAAT-GAGGAATG-AGTCTCAACTGAAGCTTGTCCTCTCATCTTTC-----
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                 53285861 186 + 139301422 -----TAAAAATCTATTTATT---C--------ATCAAATATAAACTGAATA----------CTTGT---------TA-TGTAAAAGACACAT----TATAA-----------------TAACTA--TCAACACCCTT----CTATTCTTAAAAAT-TTCATGTGTACCTGCCTGGCCTGAGCAAGCTGAG-AGATTTAAAATTAGAGAAT-GAGGAATG-AGTCTCAACTGAAGCTTGTCCTCTCATCTTTC-----
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                 33705932 182 + 155834243 -----TTTTAATCAATTT---------------ATCACATGTAAGCTGAATG----------CCTAT---------TA-TGTAGAAGACACAT----TCTAA-----------------TAACTT--ACAAGACCCTT----TCACCCTTAAACAT-TTCATATTTACTTGCTCAGCCTGGGAAAAGTGAG-AGATTTAAAACTGGAGTAT-TAAGACTG-ACCCTCAGTTGAAGCTTTTCCTCTCATTTTAC-----
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196              4061180 185 +   9144518 -----TTTCAGTTGATTTGTT---C--------GTCAAATATAAGCTGAATA----------CCTGT---------TA-TGTAGCACACATAT----ATTAC-----------------TATCTT--TCAGGACCCTT----TTGCCCTTAAA-AC-TTCATATTTACCTGCCCAGTTTGAGCAAGCTGGA-AGATTTAATATCGGAGTAT-TAGAACTT-AGTCTCAATTGAAGCTTTTCCTCCCTCCTTTC-----
i saiBol1.JH378196             I 305 C 0
s otoGar3.GL873762              1560261 184 -   1847653 ---------AGTCCATTTATT---C--------TTTAAATATAACTTGAATA----------CCTAT---------TA-TGTAACAGACATGT----CCTGC----------------TTATCTC--TCAGGACCCTT----GCATTCTTAAAAATACTCTTGTTTATCTGCCTAGCCTGAGAAAGTTGAA-ATATTTAAAATTACAGTGG-TAGGACTT-AATCTCAATTGAAGTCTTTCCTCCCTCCtttt-----
i otoGar3.GL873762             C 0 I 556
s vicPac2.KB632521              1177924 194 -   7152218 -----TTTCAATCCATTTATT---C--------ATCAAATATAACTTGAATA----------CCTAT---------TA-TGTAGTAGACAGA------CTACTCAGGACCCTTGGTCTCTCTGTC--TCAGAGCCCTT----TTGTCCTTAAAAAC-TTCATGT-----TGTGCCCTATGAGCAAGATGAG-ACCTTAAAAACTGAAGTAT-TAACATTTCATTTCCAGTTGACGCTTTCCCTCC---CTTTC-----
i vicPac2.KB632521             C 0 I 1
s camFer1.KB018161                 6491 199 -     34802 -----TTTCAATCCATTTATT---C--------ATCAAATATAACTTGAATA----------CCTAT---------TA-TGTAGTATACAGAC----TCTACTCAGGACCCTTCGTCTCTCTCTC--TCAGAGCCCTT----TCGTCCTTAAAAAC-TTCATGT-----TGCGCCCTATGAGCAAGATGAG-ACCTTAAAAACTGAAGTAT-TAACATTTCATTTCCAGTTGAAGCTTTTCCTCCCTTCTTTC-----
i camFer1.KB018161             C 0 I 1
s orcOrc1.KB316915              2910888 194 -  11690531 -----TTT-AATCCATTTGTT---C--------ATCAAATACAACTTGAATA----------CCTAT---------TA-TATAGCAGATGCTT----TCTACTCAGGACCCT--GCATCTATCTC--TCAGAGCTCTT----TCATCCTTAAAAAC-TTCATGT-----TGC-CCCCGTGAGCATGATGAGAAATTTAAAATTTGAAGTAT-TAAGGCTT-AGTCTCAATTGAAGCTTTTCTCCC-TTCTTTC-----
i orcOrc1.KB316915             C 0 I 1
s equCab2.chr29                10871260 186 +  33672925 -----T-TCAATCCATTTATT---CATCATACAATCATACATACCCTGAATA----------CCTGT---------TA-TATAGTGGGCATAT----TCTCC-------------------GCTC--TCAGGACCCTT----TCATCCTTAAAAAC-TTAATGC-----TGCCCATTCTGAGCAAATAGAG-AAATTTAAAATGGAAGTAT-TAGGACCT-AATCTCAGTTGATGCTTTCCCTCTCTTCTTTC-----
i equCab2.chr29                C 0 I 1
s cerSim1.JH767738              9904161 175 +  34209287 -----T-----TTCATTTATT---C--------ATCATACATACCCTGAATA----------CCTGT---------TA-TGTAGTGGACATAT----TCTGC-------------------TCTCTTTCAGGACCCTT----TTAACCTTAAAAAC-TTCATGT-----TGCCCAGTCTGAGCAAATTGAG-AAATTTAAAAT-GAAGGGT-TAGGACCT-AATCTTAATTGATACTTTTCCTCCCTTCTTTC-----
i cerSim1.JH767738             C 0 I 1
s myoLuc2.GL429990               235027 194 -   2104649 -----TTTCAATTTATCTATT---C--------ATGAAATATAACTTGAATA-------------GC---------TA-TCTAGCAGATATAT----TCTACTTAGGACCTTTTCAATCTGTCTC--CCAGGCCCATT----TCATTCTTAAAAAT-TTCATGT-----TGTCCAGTATGATCAAAT-GAG-AAATTTAAAATGGAAGTAT-TAGGACCT-AATCTTAATTGAAGCTTTTTCTTCATCCTTTC-----
i myoLuc2.GL429990             C 0 I 1
s loxAfr3.scaffold_15          39449241 179 -  55688157 -----CTTGAATCTATTTATT---C--------ATCAAA--CAACCTGAACA----------CCTGT--------------TAGCAGAAATAT----TCTAC-----------------TATATC--TTAGATTCTTT----TCATCC-TAAAAAT-GATATGTTTACCTGCTCAGTCTGAACAAGTTGAG-AAGGTTAGAATTGAAGTAT-TAGGACTT-AATGTCAGGTGAAGCTTTTCTTCTCTGCTTTC-----
i loxAfr3.scaffold_15          I 11 C 0
s triMan1.JH594766                16094 180 +   6345240 -----CTTGCATCCATTTATT---C--------ATCAAA--CAACCTGAACA----------CCTAT--------------TAGCAGACATAT----TTTAC-----------------TATCTC--TCAGGTCCCTT----TCATCCTTAAAACT-GACATGTTTACCTGCTCGGTCTGAGCAAGTTGAG-AAATTTAAAACCCAACTAT-TAGGACTT-AATGTCAATTGAAGCTTTTCTTCCCTTCTTTC-----
i triMan1.JH594766             I 11 C 0
s sarHar1.chr5_GL861647_random   317535 155 -   4230514 ------TTAAATGTGTTCATTAGCT--------ATCAGA--------GAACT----------CTTGT---------TAGTTGAGTATAAACAG----TATGT-----------------CAACTA--TTTAG----------TTATCCACTAG-TT-TTAATATA----TAAACACTCCCAGAATGATGAA-GAGT-----------GAAG-CTACATGT-AAACTCA----AAGACTCTTCTCTCCCCTTTG-----
i sarHar1.chr5_GL861647_random I 15 I 1
s danRer10.chr19               48223638 198 -  48790377 ATAACATACAATTAATATATA---A--------AACAATTTTAATATAAATGGTATTTTCTGCTTATGATTATAAACA-TGCAAAATGTACAAAAAGTGTAT-----------------TTTTTA--TTAAAATAAATAAAAATAATATTAATTAT-TTATAATATATATTATAATATTAAAAATATTATA-ATAATAAAAATTGTATAATATTGAAAAT-AGTAT--ATTAAA------------------------
i danRer10.chr19               C 0 C 0
e ornAna1.Ultra479              3864917 5904 -   6008416 I
e tetNig2.chr10                 6379385   0 +  13272281 I
e punNye1.JH419232              4767720 338 +   5065651 T
e mayZeb1.JH720522               609382   0 -   6649201 I
e hapBur1.JH425491               252157   0 -   1273513 I
e neoBri1.JH422308              3491820   0 -   5414369 I
e araMac1.AOUJ01470298              637   0 -       895 I
e takFla1.KE121866               209731   0 +    220559 I
e fr3.chr10                     9064512   0 +   9126174 I
e ficAlb2.chr4A                19371809   0 +  21182716 I
e anoCar2.chrUn_GL344195          39255 4204 +     59083 I
e pseHum1.KB221209             10759694  18 +  11841479 I
e zonAlb1.KB913045             12575724 5731 +  16390125 I
e colLiv1.KB375822              2439586  31 +   2691611 I
e allMis1.JH737798                78787 358 +    106177 I
e falPer1.KB391026              1266701  11 +   1688145 I
e falChe1.KB397934              1269954  11 -   4640569 I
e macEug2.GL124958                26121   0 -     59456 I
e galGal4.chrUn_AADN03023623       2011   0 -      5081 I
e geoFor1.JH740049               182930   0 -   1550430 I
e melGal1.chr1                 24924577 4226 + 204065131 I
e anaPla1.KB742696              1254472   0 -   1270250 I
e amaVit1.KB277496                 6803  35 -     10329 I
e apaSpi1.KB929104                22324   0 +    818693 I
e cheMyd1.KB605988               134509   0 +    155857 I
e chrPic2.chrUn_KK088237v1      1206822   0 +  22294289 I
e pelSin1.JH211051                23303   0 +    476004 I
e melUnd1.JH556589              7674127 5368 -   7952740 I
e taeGut2.chr28                 3062068   0 +   4963201 I
e pteAle1.KB031146              3117604 133 -   3193751 I

a score=-19594.000000
s hg38.chr8_KI270814v1_alt       121645 8 +    141812 AAAAAAAT
s panTro4.chr8                 55024130 8 + 143986469 AAAAAAAA
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59164722 7 + 153482349 -AAAAAAA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                81380196 5 - 104879549 ---AAAAT
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                 61691677 5 + 150158102 ---ACAAA
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                 58365510 5 + 146850525 ---ACAAA
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                 53286047 5 + 139301422 ---ACAAA
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                 33706114 4 + 155834243 ----AAAC
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196              4061365 4 +   9144518 ----AAAC
i saiBol1.JH378196             C 0 C 0
s vicPac2.KB632521              1178119 3 -   7152218 -----AAC
i vicPac2.KB632521             I 1 C 0
s camFer1.KB018161                 6691 3 -     34802 -----AAC
i camFer1.KB018161             I 1 C 0
s orcOrc1.KB316915              2911083 3 -  11690531 -----AAC
i orcOrc1.KB316915             I 1 C 0
s equCab2.chr29                10871447 3 +  33672925 -----AAC
i equCab2.chr29                I 1 C 0
s cerSim1.JH767738              9904337 3 +  34209287 -----AAC
i cerSim1.JH767738             I 1 C 0
s myoLuc2.GL429990               235222 3 -   2104649 -----AAC
i myoLuc2.GL429990             I 1 C 0
s loxAfr3.scaffold_15          39449420 4 -  55688157 ----AAAC
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                16274 4 +   6345240 ----AAAC
i triMan1.JH594766             C 0 C 0
s sarHar1.chr5_GL861647_random   317691 2 -   4230514 ------AT
i sarHar1.chr5_GL861647_random I 1 I 8
s danRer10.chr19               48223836 8 -  48790377 AATataat
i danRer10.chr19               C 0 C 0
e ornAna1.Ultra479              3864917 5904 -   6008416 I
e tetNig2.chr10                 6379385 0 +  13272281 I
e punNye1.JH419232              4767720 338 +   5065651 T
e mayZeb1.JH720522               609382 0 -   6649201 I
e hapBur1.JH425491               252157 0 -   1273513 I
e neoBri1.JH422308              3491820 0 -   5414369 I
e araMac1.AOUJ01470298              637 0 -       895 I
e takFla1.KE121866               209731 0 +    220559 I
e fr3.chr10                     9064512 0 +   9126174 I
e ficAlb2.chr4A                19371809 0 +  21182716 I
e anoCar2.chrUn_GL344195          39255 4204 +     59083 I
e pseHum1.KB221209             10759694 18 +  11841479 I
e zonAlb1.KB913045             12575724 5731 +  16390125 I
e colLiv1.KB375822              2439586 31 +   2691611 I
e allMis1.JH737798                78787 358 +    106177 I
e falPer1.KB391026              1266701 11 +   1688145 I
e falChe1.KB397934              1269954 11 -   4640569 I
e macEug2.GL124958                26121 0 -     59456 I
e galGal4.chrUn_AADN03023623       2011 0 -      5081 I
e geoFor1.JH740049               182930 0 -   1550430 I
e melGal1.chr1                 24924577 4226 + 204065131 I
e anaPla1.KB742696              1254472 0 -   1270250 I
e amaVit1.KB277496                 6803 35 -     10329 I
e apaSpi1.KB929104                22324 0 +    818693 I
e cheMyd1.KB605988               134509 0 +    155857 I
e chrPic2.chrUn_KK088237v1      1206822 0 +  22294289 I
e pelSin1.JH211051                23303 0 +    476004 I
e melUnd1.JH556589              7674127 5368 -   7952740 I
e taeGut2.chr28                 3062068 0 +   4963201 I
e pteAle1.KB031146              3117604 133 -   3193751 I
e otoGar3.GL873762              1560445 556 -   1847653 I

a score=298096.000000
s hg38.chr8_KI270814v1_alt       121653 37 +    141812 AAAATCATTTCTGATGTGGGAAAGTAATGCAAGATAA
s panTro4.chr8                 55024138 37 + 143986469 AAAATCATTTCTGATGTGGGAAAGTAGTGCAAGATAA
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59164729 37 + 153482349 AAAATCATTTCTGATGTGAGAAAGTAGTGCAAGATAA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                81380201 37 - 104879549 AAAAACACTTCTGAAGTGAGAAACTAGTAAAAGATAA
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                 61691682 37 + 150158102 AAAATCATTTCTGATGTGAGAAAGTAGTGCAAGATAA
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                 58365515 37 + 146850525 AAAATCATTTCTGATGTGAGAAAGTAGTGCAAGATAA
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                 53286052 37 + 139301422 AACATCATTTCTGATGTGAGAAAGTAGTGCAAGATAA
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                 33706118 37 + 155834243 AAAAACACTTCTGAAGTGAGAAACTGGTAGAAGATAA
i calJac3.chr7                 C 0 I 1
s saiBol1.JH378196              4061369 35 +   9144518 AAAAGCACTTCTGAAGGTAGAAAATAG--AAAAATAA
i saiBol1.JH378196             C 0 I 319
s vicPac2.KB632521              1178122 37 -   7152218 AAAAACTTGTCTGAAGGTAGGAAATTGTAAAAGATAA
i vicPac2.KB632521             C 0 I 4
s camFer1.KB018161                 6694 37 -     34802 AAAAGCTTGTCTGAAGGTAGGAAATTGTAAAAGATAA
i camFer1.KB018161             C 0 I 4
s orcOrc1.KB316915              2911086 37 -  11690531 AGAAGCATTTCTGAAGGTAGGAAATTGTAAAAGATAA
i orcOrc1.KB316915             C 0 I 4
s equCab2.chr29                10871450 37 +  33672925 AAAAGCATCTCCGAAGGAAGGAAATTCTAAAAGATAA
i equCab2.chr29                C 0 I 4
s cerSim1.JH767738              9904340 37 +  34209287 AAAAGCATTTCTGAAGGTAGGAAATTGTAAAAGATAA
i cerSim1.JH767738             C 0 I 4
s pteAle1.KB031146              3117737 37 -   3193751 AAAAATATATCTGGAGATAGAAAATTGTAAAAGATAA
i pteAle1.KB031146             I 133 I 4
s myoLuc2.GL429990               235225 37 -   2104649 CAAAGTATTTCTGAAGGTAGGAAATTGTAAAAGATAA
i myoLuc2.GL429990             C 0 I 4
s loxAfr3.scaffold_15          39449424 37 -  55688157 AAAAGCATTTCTGAAGGCAGGAAATTGTAAAAGATGA
i loxAfr3.scaffold_15          C 0 I 4
s triMan1.JH594766                16278 37 +   6345240 AAAAGCATTTCTGAAGGTAGGAAATTATAAAAGATAA
i triMan1.JH594766             C 0 I 4
s sarHar1.chr5_GL861647_random   317701 26 -   4230514 -atattttcccctaaaatgCACAGTGA----------
i sarHar1.chr5_GL861647_random I 8 I 3
s danRer10.chr19               48223844 30 -  48790377 aataataataataat-------aataataataaATAG
i danRer10.chr19               C 0 C 0
e ornAna1.Ultra479              3864917 5904 -   6008416 I
e tetNig2.chr10                 6379385  0 +  13272281 I
e punNye1.JH419232              4767720 338 +   5065651 T
e mayZeb1.JH720522               609382  0 -   6649201 I
e hapBur1.JH425491               252157  0 -   1273513 I
e neoBri1.JH422308              3491820  0 -   5414369 I
e araMac1.AOUJ01470298              637  0 -       895 I
e takFla1.KE121866               209731  0 +    220559 I
e fr3.chr10                     9064512  0 +   9126174 I
e ficAlb2.chr4A                19371809  0 +  21182716 I
e anoCar2.chrUn_GL344195          39255 4204 +     59083 I
e pseHum1.KB221209             10759694 18 +  11841479 I
e zonAlb1.KB913045             12575724 5731 +  16390125 I
e colLiv1.KB375822              2439586 31 +   2691611 I
e allMis1.JH737798                78787 358 +    106177 I
e falPer1.KB391026              1266701 11 +   1688145 I
e falChe1.KB397934              1269954 11 -   4640569 I
e macEug2.GL124958                26121  0 -     59456 I
e galGal4.chrUn_AADN03023623       2011  0 -      5081 I
e geoFor1.JH740049               182930  0 -   1550430 I
e melGal1.chr1                 24924577 4226 + 204065131 I
e anaPla1.KB742696              1254472  0 -   1270250 I
e amaVit1.KB277496                 6803 35 -     10329 I
e apaSpi1.KB929104                22324  0 +    818693 I
e cheMyd1.KB605988               134509  0 +    155857 I
e chrPic2.chrUn_KK088237v1      1206822  0 +  22294289 I
e pelSin1.JH211051                23303  0 +    476004 I
e melUnd1.JH556589              7674127 5368 -   7952740 I
e taeGut2.chr28                 3062068  0 +   4963201 I
e otoGar3.GL873762              1560445 556 -   1847653 I

a score=-20897.000000
s hg38.chr8_KI270814v1_alt       121690 6 +    141812 C-ATCAG
s panTro4.chr8                 55024175 6 + 143986469 C-ATCAG
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59164766 6 + 153482349 C-ATCAG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                81380238 7 - 104879549 CTACCAA
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                 61691719 6 + 150158102 T-ATCAG
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                 58365552 6 + 146850525 T-ATCAG
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                 53286089 6 + 139301422 T-ATCAG
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                 33706156 6 + 155834243 T-ATCAG
i calJac3.chr7                 I 1 M 676
s vicPac2.KB632521              1178163 3 -   7152218 T-AC---
i vicPac2.KB632521             I 4 C 0
s camFer1.KB018161                 6735 3 -     34802 T-AC---
i camFer1.KB018161             I 4 C 0
s orcOrc1.KB316915              2911127 3 -  11690531 T-AC---
i orcOrc1.KB316915             I 4 C 0
s equCab2.chr29                10871491 3 +  33672925 T-AC---
i equCab2.chr29                I 4 C 0
s cerSim1.JH767738              9904381 3 +  34209287 T-AC---
i cerSim1.JH767738             I 4 C 0
s pteAle1.KB031146              3117778 3 -   3193751 T-AT---
i pteAle1.KB031146             I 4 C 0
s myoLuc2.GL429990               235266 3 -   2104649 T-AC---
i myoLuc2.GL429990             I 4 C 0
s loxAfr3.scaffold_15          39449465 3 -  55688157 T-AA---
i loxAfr3.scaffold_15          I 4 C 0
s triMan1.JH594766                16319 3 +   6345240 T-AA---
i triMan1.JH594766             I 4 C 0
s sarHar1.chr5_GL861647_random   317730 3 -   4230514 C-AT---
i sarHar1.chr5_GL861647_random I 3 C 0
s danRer10.chr19               48223874 3 -  48790377 T-AT---
i danRer10.chr19               C 0 C 0
e ornAna1.Ultra479              3864917 5904 -   6008416 I
e tetNig2.chr10                 6379385 0 +  13272281 I
e punNye1.JH419232              4767720 338 +   5065651 T
e mayZeb1.JH720522               609382 0 -   6649201 I
e hapBur1.JH425491               252157 0 -   1273513 I
e neoBri1.JH422308              3491820 0 -   5414369 I
e araMac1.AOUJ01470298              637 0 -       895 I
e takFla1.KE121866               209731 0 +    220559 I
e fr3.chr10                     9064512 0 +   9126174 I
e ficAlb2.chr4A                19371809 0 +  21182716 I
e anoCar2.chrUn_GL344195          39255 4204 +     59083 I
e pseHum1.KB221209             10759694 18 +  11841479 I
e zonAlb1.KB913045             12575724 5731 +  16390125 I
e colLiv1.KB375822              2439586 31 +   2691611 I
e allMis1.JH737798                78787 358 +    106177 I
e falPer1.KB391026              1266701 11 +   1688145 I
e falChe1.KB397934              1269954 11 -   4640569 I
e macEug2.GL124958                26121 0 -     59456 I
e galGal4.chrUn_AADN03023623       2011 0 -      5081 I
e geoFor1.JH740049               182930 0 -   1550430 I
e melGal1.chr1                 24924577 4226 + 204065131 I
e anaPla1.KB742696              1254472 0 -   1270250 I
e amaVit1.KB277496                 6803 35 -     10329 I
e apaSpi1.KB929104                22324 0 +    818693 I
e cheMyd1.KB605988               134509 0 +    155857 I
e chrPic2.chrUn_KK088237v1      1206822 0 +  22294289 I
e pelSin1.JH211051                23303 0 +    476004 I
e melUnd1.JH556589              7674127 5368 -   7952740 I
e taeGut2.chr28                 3062068 0 +   4963201 I
e otoGar3.GL873762              1560445 556 -   1847653 I
e saiBol1.JH378196              4061404 319 +   9144518 I

a score=-16939.000000
s hg38.chr8_KI270814v1_alt       121696 7 +    141812 --TGG-CCAC
s panTro4.chr8                 55024181 7 + 143986469 --CAG-CCAC
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59164772 7 + 153482349 --CGG-CCAC
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                81380245 7 - 104879549 --CCA-CGAT
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                 61691725 7 + 150158102 --TTG-CCAT
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                 58365558 7 + 146850525 --TTG-CCAT
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                 53286095 7 + 139301422 --TTA-CCAT
i chlSab2.chr8                 C 0 C 0
s vicPac2.KB632521              1178166 7 -   7152218 --CTG-CCCT
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                 6738 7 -     34802 --CTG-CCCT
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915              2911130 8 -  11690531 --TTGTCCTT
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                10871494 7 +  33672925 --TTG-CCTT
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738              9904384 7 +  34209287 --TTG-CCTT
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146              3117781 7 -   3193751 --CTA-TCCT
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990               235269 7 -   2104649 --CTG-CTCT
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15          39449468 5 -  55688157 --CTG-CC--
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                16322 5 +   6345240 --CTG-CC--
i triMan1.JH594766             C 0 C 0
s sarHar1.chr5_GL861647_random   317733 5 -   4230514 ---TG-CCC-
i sarHar1.chr5_GL861647_random C 0 C 0
s danRer10.chr19               48223877 3 -  48790377 AAT-------
i danRer10.chr19               C 0 C 0
e ornAna1.Ultra479              3864917 5904 -   6008416 I
e tetNig2.chr10                 6379385 0 +  13272281 I
e punNye1.JH419232              4767720 338 +   5065651 T
e mayZeb1.JH720522               609382 0 -   6649201 I
e hapBur1.JH425491               252157 0 -   1273513 I
e neoBri1.JH422308              3491820 0 -   5414369 I
e araMac1.AOUJ01470298              637 0 -       895 I
e takFla1.KE121866               209731 0 +    220559 I
e fr3.chr10                     9064512 0 +   9126174 I
e ficAlb2.chr4A                19371809 0 +  21182716 I
e anoCar2.chrUn_GL344195          39255 4204 +     59083 I
e pseHum1.KB221209             10759694 18 +  11841479 I
e zonAlb1.KB913045             12575724 5731 +  16390125 I
e colLiv1.KB375822              2439586 31 +   2691611 I
e allMis1.JH737798                78787 358 +    106177 I
e falPer1.KB391026              1266701 11 +   1688145 I
e falChe1.KB397934              1269954 11 -   4640569 I
e macEug2.GL124958                26121 0 -     59456 I
e galGal4.chrUn_AADN03023623       2011 0 -      5081 I
e geoFor1.JH740049               182930 0 -   1550430 I
e melGal1.chr1                 24924577 4226 + 204065131 I
e anaPla1.KB742696              1254472 0 -   1270250 I
e amaVit1.KB277496                 6803 35 -     10329 I
e apaSpi1.KB929104                22324 0 +    818693 I
e cheMyd1.KB605988               134509 0 +    155857 I
e chrPic2.chrUn_KK088237v1      1206822 0 +  22294289 I
e pelSin1.JH211051                23303 0 +    476004 I
e calJac3.chr7                 33706162 676 + 155834243 M
e melUnd1.JH556589              7674127 5368 -   7952740 I
e taeGut2.chr28                 3062068 0 +   4963201 I
e otoGar3.GL873762              1560445 556 -   1847653 I
e saiBol1.JH378196              4061404 319 +   9144518 I

a score=150218.000000
s hg38.chr8_KI270814v1_alt       121703 103 +    141812 TTTG-AAAAT-GTATA--CGTCTTA-------AACAGTGATATTAATTATcataaatactt---accctacatgcattttatacatgtaaatactaatttaca------t-acatgcatacatT
s panTro4.chr8                 55024188 103 + 143986469 TTTG-AAAAT-GTATA--GGTCTTA-------AACAGTGATATTAATTATCATAAATACTT---ACCCTACATGCATTTTATACATGTAAATACTAATTTACA------T-ACATGCATACATT
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59164779  99 + 153482349 TTTG-AAAAT-GTATA--GGTCTTA-------AATAGTGATATTAATTATCATAAA----T---ACCCTACGTGCATTTTATATATGTAAATACTAATTTACA------T-ACATGCATACATT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                81380252  94 - 104879549 TTTG-GAAAT-TTATAACAGCTTTA-------AATAGTAATATTAATCATTGGAAATACCT---AATTTACATGCATTCTATAAATTTAAATATGAATTTACA------T-AC-----------
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                 61691732 102 + 150158102 TTTG-AAAAT-TTATA--TGTTTTA-------AACAGTGATATTAATTAT-ATAGATACTT---ACGTCACATGCATTTTATACATGTAAATACTAATTTACA------T-ACGTGCATACATT
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                 58365565 102 + 146850525 TTTG-AAAAT-TTATA--TGTTTTA-------AACAGTGATATTAATTAT-ATAGATACTT---ACGTCACATGCATTTTATACATGTAAATACTAATTTACA------T-ACGTGCATACATT
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                 53286102 102 + 139301422 TTTG-AAAAT-TTATA--TGTTTTA-------AACAGTGATATTAATTAT-ATAGATACTT---ACGTCACATGCGTTTTATACATGTAAATACTAATTTACA------T-ACATGCATACATT
i chlSab2.chr8                 C 0 C 0
s saiBol1.JH378196              4061723  63 +   9144518 TTTG-AAAAT-TTATAACAGTTTTA-------AATGTGAATATTAATCATTGGAAGTGC----------------------------------CTAATTTACA------T-TC-----------
i saiBol1.JH378196             I 319 C 0
s vicPac2.KB632521              1178173  60 -   7152218 TTTG-AACAT-TTATAATAGTATGA-------AATAT---TATTGATCATTGGAAATGT----------------------------------TTGA-TTTCA------TAAC-----------
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                 6745  60 -     34802 TTTG-AACAT-TTATAATAGTATGA-------AATAT---TATTGATCGTTGGAAATGT----------------------------------TTGA-TTTCA------TAAC-----------
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915              2911138  62 -  11690531 TTTG-AACAT-TTATAATGGTATTA-------AATACTAATATTGATCATTGGAAATGT----------------------------------CTGA-TTTCA------C-AC-----------
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                10871501  63 +  33672925 TTTG-AAAGT-TTATAATAGTATTG-------AATATTAATATTAATCATTGGAAATAT----------------------------------CTGAGTTTCA------T-AC-----------
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738              9904391  63 +  34209287 TTTG-AAAAT-TTACAATAGTATTG-------AATATTAATATTAATCATTCGAAATAT----------------------------------CTGTTTTTCA------T-AT-----------
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146              3117788  62 -   3193751 TTTG-AAAAT-GTATAA-AATATTA-------ACTAATAATAACGATCCTTGGAAATAC----------------------------------TTGATTTTCG------T-AC-----------
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990               235276  62 -   2104649 TTTG-AAAAT-GTATCCTAGTATTA-------AATACTAATATTGATCATTGGAAATAT----------------------------------CTGATTTTCA------T-A------------
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15          39449473  61 -  55688157 CTTGAAAAAT-TTACAACAGTATTA-------AATACTAATACTATTCATTGGAAATAT----------------------------------CTGATTTACA---------------------
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                16327  60 +   6345240 TTTG-AAAAT-TTACAATAGTATTA-------AATACTAATATTAATCATTGGAAATAT----------------------------------CTGCTTTACA---------------------
i triMan1.JH594766             C 0 C 0
s sarHar1.chr5_GL861647_random   317738  67 -   4230514 TCCA-ACCAT--------GGTGCCACTCAACCAATAATATGATGACTGACCCAACATCT----------------------------------TTGTCTTTCAATATCTT--------------
i sarHar1.chr5_GL861647_random C 0 C 0
s danRer10.chr19               48223880  85 -  48790377 ATTA-AAAATAGTATA--ATATTCA-------AATAAAAATAATATTGATAGTAATTTTTTTTAAAGGCACATCCTAATAATGTATGCAAAAATG-----------------------------
i danRer10.chr19               C 0 C 0
e ornAna1.Ultra479              3864917 5904 -   6008416 I
e tetNig2.chr10                 6379385   0 +  13272281 I
e punNye1.JH419232              4767720 338 +   5065651 T
e mayZeb1.JH720522               609382   0 -   6649201 I
e hapBur1.JH425491               252157   0 -   1273513 I
e neoBri1.JH422308              3491820   0 -   5414369 I
e araMac1.AOUJ01470298              637   0 -       895 I
e takFla1.KE121866               209731   0 +    220559 I
e fr3.chr10                     9064512   0 +   9126174 I
e ficAlb2.chr4A                19371809   0 +  21182716 I
e anoCar2.chrUn_GL344195          39255 4204 +     59083 I
e pseHum1.KB221209             10759694  18 +  11841479 I
e zonAlb1.KB913045             12575724 5731 +  16390125 I
e colLiv1.KB375822              2439586  31 +   2691611 I
e allMis1.JH737798                78787 358 +    106177 I
e falPer1.KB391026              1266701  11 +   1688145 I
e falChe1.KB397934              1269954  11 -   4640569 I
e macEug2.GL124958                26121   0 -     59456 I
e galGal4.chrUn_AADN03023623       2011   0 -      5081 I
e geoFor1.JH740049               182930   0 -   1550430 I
e melGal1.chr1                 24924577 4226 + 204065131 I
e anaPla1.KB742696              1254472   0 -   1270250 I
e amaVit1.KB277496                 6803  35 -     10329 I
e apaSpi1.KB929104                22324   0 +    818693 I
e cheMyd1.KB605988               134509   0 +    155857 I
e chrPic2.chrUn_KK088237v1      1206822   0 +  22294289 I
e pelSin1.JH211051                23303   0 +    476004 I
e calJac3.chr7                 33706162 676 + 155834243 M
e melUnd1.JH556589              7674127 5368 -   7952740 I
e taeGut2.chr28                 3062068   0 +   4963201 I
e otoGar3.GL873762              1560445 556 -   1847653 I

a score=370568.000000
s hg38.chr8_KI270814v1_alt       121806 49 +    141812 TAGATTCTGTAAATCTAAATATTTAATTAAATGAGCC---ATATTTATTTAT
s panTro4.chr8                 55024291 49 + 143986469 TAGATTCTGTAAATCTAAATATTTAATTAAATGAGCC---ATATTTATTTAT
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59164878 49 + 153482349 TAGATTCTGTAAATCTAAATATTTAATTAAATGAGTC---ACATTTATTTAT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                81380346 42 - 104879549 ---ATTCTGTAAATCTAAATATGGAATAAAATGAGCC---A----TACCTAC
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                 61691834 49 + 150158102 TAGATTCTGTAAATCTAAATACTTAGTAAAATGAGCC---ATATTTATTTAT
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                 58365667 49 + 146850525 TAGATTCTGTAAATCTAAATACTTAGTAAAATGAGCC---ATATTTATTTAT
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                 53286204 49 + 139301422 AGGATTCTGTAAATCTAAATACTTAGTAAAATGAGCC---ATATTTATTTAT
i chlSab2.chr8                 C 0 C 0
s saiBol1.JH378196              4061786 41 +   9144518 ---ATTCTATAAATCTAAATA-----GAAAATAAGCT---ATACTCTTTCAT
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762              1561001 49 -   1847653 TATATTCTACACGTCTAACTATTGAATAAAATAAGTC---TTACCTATTTAT
i otoGar3.GL873762             I 556 C 0
s vicPac2.KB632521              1178233 46 -   7152218 ---AATGTATAAATCTAAATGTTGAATAAAATGAGCC---ATCTTTATTCAT
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                 6805 46 -     34802 ---AATGTATAAATCTAAATGTTGAATAAAATGAGCC---ATCCCTATTCAT
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915              2911200 46 -  11690531 ---AATCTGTAAATGTAAATATTGAATAAAATGAGCC---ATTCCTATTCAT
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                10871564 46 +  33672925 ---AATCCATAAATCTAAATATTGAATAAAATGAGCC---ATCCGTAGTCAC
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738              9904454 46 +  34209287 ---AATCTATAAATCTAAATGTTGACTAGAAAGAGCT---ATCCCAATTCAT
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146              3117850 44 -   3193751 ---AATCTCTAAATTTAAATATTGAGTAAAA--AGCC---ATCCCTATTCAT
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990               235338 46 -   2104649 ---AATCTATAAATCTAAATATTGAATAAAATGAGCC---ATCCCTGTTCAT
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15          39449534 49 -  55688157 TAGATTATATATTTCTAAATATTGAATAAAATGAGCC---ATACCTATGCAT
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                16387 49 +   6345240 TACATTCTGTAAATCTAAATATTGAATAAAATGAGCC---ATACCTATTCAT
i triMan1.JH594766             C 0 C 0
s sarHar1.chr5_GL861647_random   317805 37 -   4230514 ----TTCCCCTAATGTGAGCATTTTATG--------C---TGCTTTGCTTCC
i sarHar1.chr5_GL861647_random C 0 C 0
s danRer10.chr19               48223965 40 -  48790377 ---------CAAA---AAATATATAATTAAATTAATTTTAACATTAATATAT
i danRer10.chr19               C 0 N 0
e ornAna1.Ultra479              3864917 5904 -   6008416 I
e tetNig2.chr10                 6379385  0 +  13272281 I
e punNye1.JH419232              4767720 338 +   5065651 T
e mayZeb1.JH720522               609382  0 -   6649201 I
e hapBur1.JH425491               252157  0 -   1273513 I
e neoBri1.JH422308              3491820  0 -   5414369 I
e araMac1.AOUJ01470298              637  0 -       895 I
e takFla1.KE121866               209731  0 +    220559 I
e fr3.chr10                     9064512  0 +   9126174 I
e ficAlb2.chr4A                19371809  0 +  21182716 I
e anoCar2.chrUn_GL344195          39255 4204 +     59083 I
e pseHum1.KB221209             10759694 18 +  11841479 I
e zonAlb1.KB913045             12575724 5731 +  16390125 I
e colLiv1.KB375822              2439586 31 +   2691611 I
e allMis1.JH737798                78787 358 +    106177 I
e falPer1.KB391026              1266701 11 +   1688145 I
e falChe1.KB397934              1269954 11 -   4640569 I
e macEug2.GL124958                26121  0 -     59456 I
e galGal4.chrUn_AADN03023623       2011  0 -      5081 I
e geoFor1.JH740049               182930  0 -   1550430 I
e melGal1.chr1                 24924577 4226 + 204065131 I
e anaPla1.KB742696              1254472  0 -   1270250 I
e amaVit1.KB277496                 6803 35 -     10329 I
e apaSpi1.KB929104                22324  0 +    818693 I
e cheMyd1.KB605988               134509  0 +    155857 I
e chrPic2.chrUn_KK088237v1      1206822  0 +  22294289 I
e pelSin1.JH211051                23303  0 +    476004 I
e calJac3.chr7                 33706162 676 + 155834243 M
e melUnd1.JH556589              7674127 5368 -   7952740 I
e taeGut2.chr28                 3062068  0 +   4963201 I

a score=171114.000000
s hg38.chr8_KI270814v1_alt       121855 20 +    141812 TTGAATCCTGTCTTC-TATTA---
s panTro4.chr8                 55024340 20 + 143986469 TTGAATCCTGTCTTC-TATTA---
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59164927 20 + 153482349 TTGAATCCTGTCTTT-TATTA---
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                81380388 20 - 104879549 TTGAATCCCAAGTTT-TCTTT---
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                 61691883 20 + 150158102 TTGAATCCTGACTTT-TCTTT---
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                 58365716 20 + 146850525 TTGAATCCTGACTTT-TCTTT---
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                 53286253 20 + 139301422 TTGAATCCTGACTTT-TCTTT---
i chlSab2.chr8                 C 0 C 0
s saiBol1.JH378196              4061827 20 +   9144518 TTGAATTCTGAGTTT-CTTTT---
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762              1561050 20 -   1847653 TTGAATCCTGAGTTT-GCTTT---
i otoGar3.GL873762             C 0 I 186
s vicPac2.KB632521              1178279 20 -   7152218 TTGAATCCTGAATTT-CCTTT---
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                 6851 20 -     34802 TTGAATCCTGAATTT-CCTTT---
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915              2911246 20 -  11690531 TTGAATCCTGAATCT-CCTTT---
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                10871610 20 +  33672925 TTGAATCCTGAATTT-CCTTT---
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738              9904500 21 +  34209287 TTGAATCCTGAACTTAACCTT---
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146              3117894 20 -   3193751 TTGAATCCTGTGTTT-CCTTT---
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990               235384 20 -   2104649 TTGAATTCTGAGTTT-CCTTT---
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15          39449583 20 -  55688157 ATAATTCCTGAGTGT-CCTTT---
i loxAfr3.scaffold_15          C 0 I 4
s triMan1.JH594766                16436 20 +   6345240 TTGATTCTTGAGTTT-CCTTT---
i triMan1.JH594766             C 0 I 4
s sarHar1.chr5_GL861647_random   317842 23 -   4230514 TTCCCTTCTGATTTC-TTTTACTA
i sarHar1.chr5_GL861647_random C 0 C 0
e ornAna1.Ultra479              3864917 5904 -   6008416 I
e tetNig2.chr10                 6379385  0 +  13272281 I
e punNye1.JH419232              4767720 338 +   5065651 T
e mayZeb1.JH720522               609382  0 -   6649201 I
e hapBur1.JH425491               252157  0 -   1273513 I
e neoBri1.JH422308              3491820  0 -   5414369 I
e araMac1.AOUJ01470298              637  0 -       895 I
e takFla1.KE121866               209731  0 +    220559 I
e fr3.chr10                     9064512  0 +   9126174 I
e ficAlb2.chr4A                19371809  0 +  21182716 I
e anoCar2.chrUn_GL344195          39255 4204 +     59083 I
e pseHum1.KB221209             10759694 18 +  11841479 I
e zonAlb1.KB913045             12575724 5731 +  16390125 I
e colLiv1.KB375822              2439586 31 +   2691611 I
e allMis1.JH737798                78787 358 +    106177 I
e falPer1.KB391026              1266701 11 +   1688145 I
e falChe1.KB397934              1269954 11 -   4640569 I
e macEug2.GL124958                26121  0 -     59456 I
e galGal4.chrUn_AADN03023623       2011  0 -      5081 I
e geoFor1.JH740049               182930  0 -   1550430 I
e melGal1.chr1                 24924577 4226 + 204065131 I
e anaPla1.KB742696              1254472  0 -   1270250 I
e amaVit1.KB277496                 6803 35 -     10329 I
e apaSpi1.KB929104                22324  0 +    818693 I
e cheMyd1.KB605988               134509  0 +    155857 I
e chrPic2.chrUn_KK088237v1      1206822  0 +  22294289 I
e pelSin1.JH211051                23303  0 +    476004 I
e calJac3.chr7                 33706162 676 + 155834243 M
e melUnd1.JH556589              7674127 5368 -   7952740 I
e taeGut2.chr28                 3062068  0 +   4963201 I

a score=119809.000000
s hg38.chr8_KI270814v1_alt       121875 14 +    141812 GGCTT-AA------AGTTTTT
s panTro4.chr8                 55024360 14 + 143986469 GGCTT-AA------AGTTTTT
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59164947 14 + 153482349 GGCTT-AA------AGTTTTT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                81380408 14 - 104879549 GGCTT-GA------AGTTTTA
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                 61691903 14 + 150158102 GGCTT-AA------AGTTTTT
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                 58365736 14 + 146850525 GGCTT-AA------AGTTTTT
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                 53286273 14 + 139301422 GGCTT-AA------AGTTTTT
i chlSab2.chr8                 C 0 C 0
s saiBol1.JH378196              4061847 14 +   9144518 GGCTT-AA------AGTGTTT
i saiBol1.JH378196             C 0 I 4
s otoGar3.GL873762              1561256 14 -   1847653 GGCTT-GA------AGTTTTT
i otoGar3.GL873762             I 186 I 1
s vicPac2.KB632521              1178299 14 -   7152218 GGTTT-AA------AGTTTCT
i vicPac2.KB632521             C 0 I 1
s camFer1.KB018161                 6871 14 -     34802 GGTTT-AA------AGTCTCT
i camFer1.KB018161             C 0 I 1
s orcOrc1.KB316915              2911266 14 -  11690531 GGCTT-AA------AGTTTCC
i orcOrc1.KB316915             C 0 I 1
s equCab2.chr29                10871630 14 +  33672925 GACTT-AA------AGTTTCT
i equCab2.chr29                C 0 I 1
s cerSim1.JH767738              9904521 15 +  34209287 GACTTAAA------AGTTTCT
i cerSim1.JH767738             C 0 I 1
s pteAle1.KB031146              3117914 14 -   3193751 CATGT-AA------GGTTTCT
i pteAle1.KB031146             C 0 I 1
s myoLuc2.GL429990               235404 14 -   2104649 GGCTT-TA------AGTTTTT
i myoLuc2.GL429990             C 0 I 1
s loxAfr3.scaffold_15          39449607 14 -  55688157 GTGTT-AA------AGTTTCT
i loxAfr3.scaffold_15          I 4 I 1
s triMan1.JH594766                16460 14 +   6345240 GAGTT-AA------AGTGTCT
i triMan1.JH594766             I 4 I 1
s sarHar1.chr5_GL861647_random   317865 15 -   4230514 ---TT-CACAAATCAGTTT--
i sarHar1.chr5_GL861647_random C 0 C 0
e ornAna1.Ultra479              3864917 5904 -   6008416 I
e tetNig2.chr10                 6379385  0 +  13272281 I
e punNye1.JH419232              4767720 338 +   5065651 T
e mayZeb1.JH720522               609382  0 -   6649201 I
e hapBur1.JH425491               252157  0 -   1273513 I
e neoBri1.JH422308              3491820  0 -   5414369 I
e araMac1.AOUJ01470298              637  0 -       895 I
e takFla1.KE121866               209731  0 +    220559 I
e fr3.chr10                     9064512  0 +   9126174 I
e ficAlb2.chr4A                19371809  0 +  21182716 I
e anoCar2.chrUn_GL344195          39255 4204 +     59083 I
e pseHum1.KB221209             10759694 18 +  11841479 I
e zonAlb1.KB913045             12575724 5731 +  16390125 I
e colLiv1.KB375822              2439586 31 +   2691611 I
e allMis1.JH737798                78787 358 +    106177 I
e falPer1.KB391026              1266701 11 +   1688145 I
e falChe1.KB397934              1269954 11 -   4640569 I
e macEug2.GL124958                26121  0 -     59456 I
e galGal4.chrUn_AADN03023623       2011  0 -      5081 I
e geoFor1.JH740049               182930  0 -   1550430 I
e melGal1.chr1                 24924577 4226 + 204065131 I
e anaPla1.KB742696              1254472  0 -   1270250 I
e amaVit1.KB277496                 6803 35 -     10329 I
e apaSpi1.KB929104                22324  0 +    818693 I
e cheMyd1.KB605988               134509  0 +    155857 I
e chrPic2.chrUn_KK088237v1      1206822  0 +  22294289 I
e pelSin1.JH211051                23303  0 +    476004 I
e calJac3.chr7                 33706162 676 + 155834243 M
e melUnd1.JH556589              7674127 5368 -   7952740 I
e taeGut2.chr28                 3062068  0 +   4963201 I

a score=330196.000000
s hg38.chr8_KI270814v1_alt       121889 72 +    141812 AAAA----ATTA----AGGAATTGTTTT----------------GTTTTAAAAATTTG---C----------TTTTATTTCAACGCTCCTTTTCCGTAGTACATTTAAG
s panTro4.chr8                 55024374 72 + 143986469 AAAA----ATGA----AGGAATTGCTTT----------------GTTTTAAAAATTTG---C----------TTTTATTTCAACGCTCCTTTTCCATAGTACATTTAAG
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59164961 72 + 153482349 AAAA----ATTA----AGGAATTGCTTT----------------GTTTTAAGAATTTG---C----------TTTTATTTCAACGCTCCTTTTCCGTAGTACATTTAAG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                81380422 73 - 104879549 AAAAT---ATTA----AAGAAGTACTTT----------------GTATTAACAGTTTG---T----------TTTTATTTCAACTCTCCTTTTGTGTAGCACTCTTAAA
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                 61691917 72 + 150158102 AAAA----ATTA----AGGAATTACTTT----------------GTTTTAAAAATTTG---C----------TTTTATTTCAACCCTCCTTTCCCATGGTACGTTTAAG
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                 58365750 72 + 146850525 AAAA----ATTA----AGGAATTACTTT----------------GTTTTAAAAATTTG---C----------TTTTATTTCAACCCTCCTTTCCCATGGTACGTTTAAG
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                 53286287 72 + 139301422 AAAA----ATTA----AGGAATTACTTT----------------GTTTTAAAAATTTG---C----------TTTTATTTCAACCCTCCTTTCCCATGGTACGTTTAAG
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                 33706839 75 + 155834243 AAAT----ATCA----AAGAAGTACTTT----------------GTTTTAACAATTTG---TT-GT------TTTTATTTCAACTCTGCTTTTGCATAGTATTCTTACA
i calJac3.chr7                 M 676 C 0
s saiBol1.JH378196              4061865 83 +   9144518 GAAA----ATCAAAGTAAGAATGAGTTT----------------GTTTTAAACATTTG---TT-GTCATC--TTCATTTTCAGTCCTCTTGTTCTATGGTACTTTTGAG
i saiBol1.JH378196             I 4 C 0
s otoGar3.GL873762              1561271 84 -   1847653 GAAA----ACTAAAGAAAGAATTACTTT----------------GTTTTAA-AATTTG---TT-GTTGTCTTTGTTGTTTCAGCCCTCTGACCCCATACAACTTCTAAA
i otoGar3.GL873762             I 1 C 0
s vicPac2.KB632521              1178314 83 -   7152218 GAAA----ATCAGAGTAAGAGTGACTTT----------------TTCAGAAATTCTTG---TT-TTGTTT--TATTATTTTAGTTCTCTTTCCCCATAATACTTTTAGT
i vicPac2.KB632521             I 1 I 58
s camFer1.KB018161                 6886 83 -     34802 GGAA----ATCAGAGTAAGAGTGACTTT----------------TTCAAAAATTCTTG---TT-TTGTTT--TATTATTTTAGTTCTCTTTCCCCATAATACTTTAAGT
i camFer1.KB018161             I 1 I 58
s orcOrc1.KB316915              2911281 81 -  11690531 GAAA----ATCAGAGTTAGAGTTAC-TT----------------TTAAAAAATTCTTG---TT-TTG-CT--TGTTATTTTAGTTCTCTTTCCCCGTGCTGCTTTTATT
i orcOrc1.KB316915             I 1 I 61
s equCab2.chr29                10871645 75 +  33672925 GAGA----AT-----TAAGAATTACTTT----------------TTTAAAAATTCTTT---TT-TTGTT-----TTATTTTAGTCTTCTTTCCCCATAATACTTTTAAC
i equCab2.chr29                I 1 C 0
s cerSim1.JH767738              9904537 83 +  34209287 GAAA----ATTAAAGTAAGAATTAGTTT----------------TTTAAAAATTCTTT---TT-TTGTTT--TGTTATTTTAGTCTTCTTTCCCCATAATGCTTTTAAG
i cerSim1.JH767738             I 1 I 172
s pteAle1.KB031146              3117929 85 -   3193751 GAAA----AACAAATTAAGAATTAG-TT----------------TTTAAAAAGTCTTTTTGTT-TTGTTA--TGGTATTTTATTCCTCTTTCTCCACAATGCTTTTGAG
i pteAle1.KB031146             I 1 C 0
s myoLuc2.GL429990               235419 81 -   2104649 GAAG----ACCAAAGTAAAAGTTAC-TT----------------TAAAAAAATACTT----TA-TTGTTT--TGATATTTTAGTCCTCTTTTTCTATAATGCTTTTAAG
i myoLuc2.GL429990             I 1 C 0
s loxAfr3.scaffold_15          39449622 81 -  55688157 GAAA----ATCAAAGTAAGAATTACTTT----------------ATCTTTCTAATTTC------CTTTTT--TTAAATTTCAGCCCTCTTTTCCCATAACGCTTTTAAG
i loxAfr3.scaffold_15          I 1 C 0
s triMan1.JH594766                16475 84 +   6345240 GAAA----ATCAAAGTAAGAGTTACTTT----------------ATCtttttaatttc---ttttttttt--ttttatttCAGCCCTCTTTTCCCATACTGCTTTTAAG
i triMan1.JH594766             I 1 C 0
s sarHar1.chr5_GL861647_random   317880 89 -   4230514 ----CCTACTTA----AGTAATTTCACTAATGTAcatgaatacatttttaatagcttt---ct---------ctttctctgacaaTTCTTTCCCAGTAATACAACAGAC
i sarHar1.chr5_GL861647_random C 0 C 0
e ornAna1.Ultra479              3864917 5904 -   6008416 I
e tetNig2.chr10                 6379385  0 +  13272281 I
e punNye1.JH419232              4767720 338 +   5065651 T
e mayZeb1.JH720522               609382  0 -   6649201 I
e hapBur1.JH425491               252157  0 -   1273513 I
e neoBri1.JH422308              3491820  0 -   5414369 I
e araMac1.AOUJ01470298              637  0 -       895 I
e takFla1.KE121866               209731  0 +    220559 I
e fr3.chr10                     9064512  0 +   9126174 I
e ficAlb2.chr4A                19371809  0 +  21182716 I
e anoCar2.chrUn_GL344195          39255 4204 +     59083 I
e pseHum1.KB221209             10759694 18 +  11841479 I
e zonAlb1.KB913045             12575724 5731 +  16390125 I
e colLiv1.KB375822              2439586 31 +   2691611 I
e allMis1.JH737798                78787 358 +    106177 I
e falPer1.KB391026              1266701 11 +   1688145 I
e falChe1.KB397934              1269954 11 -   4640569 I
e macEug2.GL124958                26121  0 -     59456 I
e galGal4.chrUn_AADN03023623       2011  0 -      5081 I
e geoFor1.JH740049               182930  0 -   1550430 I
e melGal1.chr1                 24924577 4226 + 204065131 I
e anaPla1.KB742696              1254472  0 -   1270250 I
e amaVit1.KB277496                 6803 35 -     10329 I
e apaSpi1.KB929104                22324  0 +    818693 I
e cheMyd1.KB605988               134509  0 +    155857 I
e chrPic2.chrUn_KK088237v1      1206822  0 +  22294289 I
e pelSin1.JH211051                23303  0 +    476004 I
e melUnd1.JH556589              7674127 5368 -   7952740 I
e taeGut2.chr28                 3062068  0 +   4963201 I

a score=549563.000000
s hg38.chr8_KI270814v1_alt       121961  87 +    141812 -TGCTTAAAAT-TGATTTAAATGTTAATCATACGACTAGGACTTCCATTG-TCCTATTGTATATAccg-tattccacttg---------------------------------------------atgt-----------agccacc-------------
s panTro4.chr8                 55024446  87 + 143986469 -TGCTTAAAAT-TGATTTAAATGTTAATCATACGACTAGGACTTCCATTG-TCCTATTGTATATAccg-tattccacttg---------------------------------------------atgt-----------agccacc-------------
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59165033  87 + 153482349 -TGCTTAAAAT-TGATTTAAATGTTAATCATATGACTAGGACTTCCCTTG-TCTTATTGTATATACCG-TATTCCACTTG---------------------------------------------ATGC-----------AGCCAcc-------------
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                81380495  87 - 104879549 -AGC-TAAAAT-TTCTTTAAGTGTTAATCCTGTGACTAGGACTGCCATCA-TCCTGTTGTATATACCA-TATTCTACTTC---------------------------------------------ATGG----------aaggcacc-------------
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                 61691989  87 + 150158102 -TGCttaaaat-ttatttaaatattaatCATATGACTAGGACTTCCATTG-CCCTTTTGTATATACCA-TATTCCACTTG---------------------------------------------ATGT-----------AGCCACT-------------
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                 58365822  87 + 146850525 -TGCTTAAAAT-TTATTTAAATATTAATCATATGACTAGGACTTCCATTG-CCCTGTTGTATATACCA-TATTCCACTTG---------------------------------------------ATGT-----------AGCCACT-------------
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                 53286359  87 + 139301422 -TGCTTAAAAT-TTATTTAAATATTAATCATATGACTAGGACTTCCATTG-CCCCGTTGTATATACCA-TATTCCACTTG---------------------------------------------ATGT-----------AGCCACT-------------
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                 33706914  87 + 155834243 -AGC-TAAAAT-TTCTTTAAGTGTTAATCCCGTGACTTGGACTTCCATAG-TCTTGTTGTATATACCA-TATCCCACTTC---------------------------------------------ATGG----------AAGGcatc-------------
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196              4061948  87 +   9144518 -AAC-TAAAAT-TTATTTAAATGCAATTTATATGACTAGAACTCCCCTGGATGTGGTTGTATACATCA--ATTCTACTTA---------------------------------------------TTGC----------aaggcatc-------------
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762              1561355  87 -   1847653 -AAC-TAATAC-TTACTTAAATGCTGGTCATATATCTAGATCTTCCAAAG-ACCTTTTATATTCAcca-catttcacttg---------------------------------------------atgt----------aaggcacc-------------
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521              1178455 133 -   7152218 -AAC-TAAAAT-TTATTTAAAAGCCACCCATGTGACTGGAACTGCAGTAG-ACTTCTTGTGTGGATCATtatttcacttactggaaggcaccatggattgtatgatgccgtgctattttatgtgccaat----------aagaCATT-------------
i vicPac2.KB632521             I 58 I 148
s camFer1.KB018161                 7027  88 -     34802 -AAC-TAAAAT-TTATTTAAAAGCCACTCATGTAACTGGAACTGCAGTAG-ACCGGTTGTGTGGATCCTTACTTCACTTA---------------------------------------------CTGG----------AAGGCACC-------------
i camFer1.KB018161             I 58 C 0
s orcOrc1.KB316915              2911423  88 -  11690531 -AAC-TAAAAG-TTATTTAAGTGCCAACCGTGTGGCTAGAACTGCAGTAG-ACCTGTTATATAGGCCATtatttcatttg---------------------------------------------atgt----------aaggcact-------------
i orcOrc1.KB316915             I 61 C 0
s equCab2.chr29                10871720  86 +  33672925 -aac-taaaat-ttatttaaatgccaaccatatgactagaactgcagtag-acatgttgtatagaccg-tatttcac-ta---------------------------------------------acat----------aagatgct-------------
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738              9904792  86 +  34209287 -aac-taaaat-ttatttaaatgccaaccatatgattagaactgcagcag-acctgttgtatcgaccg-tatttcac-ta---------------------------------------------acgt----------aagacaat-------------
i cerSim1.JH767738             I 172 C 0
s pteAle1.KB031146              3118014  88 -   3193751 -AAA-TAAAAC-TTATTTAAATGCCAACCATATGACTAGAACTGCAATCA-GTCTGTTGTATGAACCATtatttcattta---------------------------------------------atgt----------aagacctc-------------
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990               235500  88 -   2104649 -AAC-TAAAAA-TGGTTTTAATTCTAACCGTTTGACTAGAACTGCAAAAG-GTCTATTGTATTTACTATtatttcactta---------------------------------------------acat----------aagacacc-------------
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15          39449703  84 -  55688157 -----AAGAAT-TGATTTCAGTGTCCACTGTATGATTAGAACTGCAATAG-ACCTATTGTGTATAcca-tatttcactta---------------------------------------------atgt----------gaggcatc-------------
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                16559  84 +   6345240 -----AAGAAT-TTATTTAAATGCCCATCATATGACTAGAACTGCAATAG-ACCTATTGTATACAccc-tatttcactta---------------------------------------------atgt----------aaggcatc-------------
i triMan1.JH594766             C 0 C 0
s sarHar1.chr5_GL861647_random   317969 104 -   4230514 ATAT-TAGGCTCTTACTTCACACCTTTCCAGCATGGTAGAACTACCAATG---------CATGCACCC-TGCTCAAATAG---------------------------------------------CCTTTAGCAGTACAAAGCCACTTCAACTATACAAT
i sarHar1.chr5_GL861647_random C 0 C 0
e ornAna1.Ultra479              3864917 5904 -   6008416 I
e tetNig2.chr10                 6379385   0 +  13272281 I
e punNye1.JH419232              4767720 338 +   5065651 T
e mayZeb1.JH720522               609382   0 -   6649201 I
e hapBur1.JH425491               252157   0 -   1273513 I
e neoBri1.JH422308              3491820   0 -   5414369 I
e araMac1.AOUJ01470298              637   0 -       895 I
e takFla1.KE121866               209731   0 +    220559 I
e fr3.chr10                     9064512   0 +   9126174 I
e ficAlb2.chr4A                19371809   0 +  21182716 I
e anoCar2.chrUn_GL344195          39255 4204 +     59083 I
e pseHum1.KB221209             10759694  18 +  11841479 I
e zonAlb1.KB913045             12575724 5731 +  16390125 I
e colLiv1.KB375822              2439586  31 +   2691611 I
e allMis1.JH737798                78787 358 +    106177 I
e falPer1.KB391026              1266701  11 +   1688145 I
e falChe1.KB397934              1269954  11 -   4640569 I
e macEug2.GL124958                26121   0 -     59456 I
e galGal4.chrUn_AADN03023623       2011   0 -      5081 I
e geoFor1.JH740049               182930   0 -   1550430 I
e melGal1.chr1                 24924577 4226 + 204065131 I
e anaPla1.KB742696              1254472   0 -   1270250 I
e amaVit1.KB277496                 6803  35 -     10329 I
e apaSpi1.KB929104                22324   0 +    818693 I
e cheMyd1.KB605988               134509   0 +    155857 I
e chrPic2.chrUn_KK088237v1      1206822   0 +  22294289 I
e pelSin1.JH211051                23303   0 +    476004 I
e melUnd1.JH556589              7674127 5368 -   7952740 I
e taeGut2.chr28                 3062068   0 +   4963201 I

a score=202069.000000
s hg38.chr8_KI270814v1_alt       122048  49 +    141812 atgga--------------ttgtgtgatgct-----------------------------------------gcct------------------tattt---tatgtatcaata--------------------------------------aaataatgttt
s panTro4.chr8                 55024533  49 + 143986469 atgga--------------ttgtgtgatgct-----------------------------------------gcct------------------tattt---tatgtatcaata--------------------------------------aaataatgttt
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59165120  49 + 153482349 gtgga--------------ttgtgtgatgct-----------------------------------------gcct------------------tattt---tatgtatcaata--------------------------------------aaataatgttt
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                81380582  48 - 104879549 gtgaa--------------ttgtgcgatgcc-----------------------------------------tcct------------------ta-gt---catgtaccaata--------------------------------------aaagattgttt
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                 61692076  49 + 150158102 GTGga--------------ttgtgtgatgct-----------------------------------------gcct------------------tattt---tatgtatcaata--------------------------------------aaataatgttt
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                 58365909  49 + 146850525 GTGga--------------ttgtgtgatgct-----------------------------------------gcct------------------tattt---tatgtatcaata--------------------------------------aaataatgttt
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                 53286446  49 + 139301422 GTGga--------------ttgtgtgatgct-----------------------------------------gcct------------------tattt---tatgtatcaata--------------------------------------aaataatgtat
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                 33707001  49 + 155834243 gtgaa--------------ttgtgtgatgca-----------------------------------------tcct------------------tattt---tatgtaccaata--------------------------------------aaagatttttt
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196              4062035  49 +   9144518 atgga--------------ttgtgtgatacc-----------------------------------------ccat------------------cattt---tgtatctcaata--------------------------------------agagaattatt
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762              1561442  49 -   1847653 aggga--------------ttatgtgattcc-----------------------------------------ctat------------------tattt---ttggtatcaata--------------------------------------aaaggattttt
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521              1178736 146 -   7152218 atggggaatgtagctaatattttataataacTACAAATGGAGTATAATTTAAAAATGGAGAATCACTATATTGTACATCTG-------------TAATT---TATGTAGTAATGTTATACGTcaacaacaataaaaaaacaacatgagacaaaaacaTTATG-
i vicPac2.KB632521             I 148 I 41
s camFer1.KB018161                 7115  47 -     34802 GTGGG--------------TTGTATGATGCC-----------------------------------------GTGC------------------TATTT---TATGTGCCAAT---------------------------------------AGACATTTTT-
i camFer1.KB018161             C 0 I 335
s orcOrc1.KB316915              2911511  49 -  11690531 atgga--------------ttgtatgatgcc-----------------------------------------ccac------------------tattt---tatatattaatat-------------------------------------agaaaTtttt-
i orcOrc1.KB316915             C 0 I 682
s equCab2.chr29                10871806  48 +  33672925 gtgga--------------tcgtatgatacc-----------------------------------------ccac------------------tattt---tatgtacccatg--------------------------------------agaaattttt-
i equCab2.chr29                C 0 I 1
s cerSim1.JH767738              9904878  48 +  34209287 atgga--------------tcgtatgatgcc-----------------------------------------ccgc------------------tattt---tatgtacccata--------------------------------------agaaattttt-
i cerSim1.JH767738             C 0 I 1
s pteAle1.KB031146              3118102  47 -   3193751 atgga--------------tgatgtgaggct-----------------------------------------cag-------------------tattt---tatgtaccaatg--------------------------------------ggaaattttt-
i pteAle1.KB031146             C 0 I 1
s myoLuc2.GL429990               235588  40 -   2104649 gtgga--------------tggtatgatgcc-----------------------------------------ca-----------------------------atataccaata--------------------------------------agaatttttt-
i myoLuc2.GL429990             C 0 I 1
s loxAfr3.scaffold_15          39449787  46 -  55688157 atgga--------------tagtaagatgtc--------------------------------------------c------------------tattt---tatgtatcaata--------------------------------------agaaattttaa
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                16643  46 +   6345240 atgga--------------ttgtaagatgtc--------------------------------------------t------------------tattt---tatgtatcaata--------------------------------------aggaattttaa
i triMan1.JH594766             C 0 C 0
s sarHar1.chr5_GL861647_random   318073  66 -   4230514 GTAGT--------------ATTTGCAATAAG-----------------------------------------GCGTTCATGgagaatacacacatatgtacacatgtacttata--------------------------------------caaatat----
i sarHar1.chr5_GL861647_random C 0 C 0
e ornAna1.Ultra479              3864917 5904 -   6008416 I
e tetNig2.chr10                 6379385   0 +  13272281 I
e punNye1.JH419232              4767720 338 +   5065651 T
e mayZeb1.JH720522               609382   0 -   6649201 I
e hapBur1.JH425491               252157   0 -   1273513 I
e neoBri1.JH422308              3491820   0 -   5414369 I
e araMac1.AOUJ01470298              637   0 -       895 I
e takFla1.KE121866               209731   0 +    220559 I
e fr3.chr10                     9064512   0 +   9126174 I
e ficAlb2.chr4A                19371809   0 +  21182716 I
e anoCar2.chrUn_GL344195          39255 4204 +     59083 I
e pseHum1.KB221209             10759694  18 +  11841479 I
e zonAlb1.KB913045             12575724 5731 +  16390125 I
e colLiv1.KB375822              2439586  31 +   2691611 I
e allMis1.JH737798                78787 358 +    106177 I
e falPer1.KB391026              1266701  11 +   1688145 I
e falChe1.KB397934              1269954  11 -   4640569 I
e macEug2.GL124958                26121   0 -     59456 I
e galGal4.chrUn_AADN03023623       2011   0 -      5081 I
e geoFor1.JH740049               182930   0 -   1550430 I
e melGal1.chr1                 24924577 4226 + 204065131 I
e anaPla1.KB742696              1254472   0 -   1270250 I
e amaVit1.KB277496                 6803  35 -     10329 I
e apaSpi1.KB929104                22324   0 +    818693 I
e cheMyd1.KB605988               134509   0 +    155857 I
e chrPic2.chrUn_KK088237v1      1206822   0 +  22294289 I
e pelSin1.JH211051                23303   0 +    476004 I
e melUnd1.JH556589              7674127 5368 -   7952740 I
e taeGut2.chr28                 3062068   0 +   4963201 I

a score=1939.000000
s hg38.chr8_KI270814v1_alt       122097 1 +    141812 a
s panTro4.chr8                 55024582 1 + 143986469 a
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59165169 1 + 153482349 a
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                81380630 1 - 104879549 a
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                 61692125 1 + 150158102 a
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                 58365958 1 + 146850525 a
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                 53286495 1 + 139301422 a
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                 33707050 1 + 155834243 a
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196              4062084 1 +   9144518 t
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762              1561491 1 -   1847653 t
i otoGar3.GL873762             C 0 C 0
s orcOrc1.KB316915              2912242 1 -  11690531 a
i orcOrc1.KB316915             I 682 C 0
s equCab2.chr29                10871855 1 +  33672925 a
i equCab2.chr29                I 1 C 0
s cerSim1.JH767738              9904927 1 +  34209287 a
i cerSim1.JH767738             I 1 C 0
s pteAle1.KB031146              3118150 1 -   3193751 t
i pteAle1.KB031146             I 1 C 0
s myoLuc2.GL429990               235629 1 -   2104649 t
i myoLuc2.GL429990             I 1 C 0
s loxAfr3.scaffold_15          39449833 1 -  55688157 a
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                16689 1 +   6345240 a
i triMan1.JH594766             C 0 C 0
s sarHar1.chr5_GL861647_random   318139 1 -   4230514 a
i sarHar1.chr5_GL861647_random C 0 C 0
e vicPac2.KB632521              1178882 41 -   7152218 I
e camFer1.KB018161                 7162 335 -     34802 I
e ornAna1.Ultra479              3864917 5904 -   6008416 I
e tetNig2.chr10                 6379385 0 +  13272281 I
e punNye1.JH419232              4767720 338 +   5065651 T
e mayZeb1.JH720522               609382 0 -   6649201 I
e hapBur1.JH425491               252157 0 -   1273513 I
e neoBri1.JH422308              3491820 0 -   5414369 I
e araMac1.AOUJ01470298              637 0 -       895 I
e takFla1.KE121866               209731 0 +    220559 I
e fr3.chr10                     9064512 0 +   9126174 I
e ficAlb2.chr4A                19371809 0 +  21182716 I
e anoCar2.chrUn_GL344195          39255 4204 +     59083 I
e pseHum1.KB221209             10759694 18 +  11841479 I
e zonAlb1.KB913045             12575724 5731 +  16390125 I
e colLiv1.KB375822              2439586 31 +   2691611 I
e allMis1.JH737798                78787 358 +    106177 I
e falPer1.KB391026              1266701 11 +   1688145 I
e falChe1.KB397934              1269954 11 -   4640569 I
e macEug2.GL124958                26121 0 -     59456 I
e galGal4.chrUn_AADN03023623       2011 0 -      5081 I
e geoFor1.JH740049               182930 0 -   1550430 I
e melGal1.chr1                 24924577 4226 + 204065131 I
e anaPla1.KB742696              1254472 0 -   1270250 I
e amaVit1.KB277496                 6803 35 -     10329 I
e apaSpi1.KB929104                22324 0 +    818693 I
e cheMyd1.KB605988               134509 0 +    155857 I
e chrPic2.chrUn_KK088237v1      1206822 0 +  22294289 I
e pelSin1.JH211051                23303 0 +    476004 I
e melUnd1.JH556589              7674127 5368 -   7952740 I
e taeGut2.chr28                 3062068 0 +   4963201 I

a score=27324.000000
s hg38.chr8_KI270814v1_alt       122098  5 +    141812 --------aaa--tg
s panTro4.chr8                 55024583  5 + 143986469 --------aaa--tg
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59165170  5 + 153482349 --------aaa--tg
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                81380631  5 - 104879549 --------aat--tt
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                 61692126  5 + 150158102 --------aaa--tg
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                 58365959  5 + 146850525 --------aaa--tg
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                 53286496  5 + 139301422 --------aaa--tg
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                 33707051  5 + 155834243 --------aat--tg
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196              4062085  5 +   9144518 --------aaa--tg
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762              1561492  4 -   1847653 --------ag---tg
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521              1178923  5 -   7152218 --------aaa--tg
i vicPac2.KB632521             I 41 C 0
s camFer1.KB018161                 7497  5 -     34802 --------aaa--tg
i camFer1.KB018161             I 335 C 0
s orcOrc1.KB316915              2912243  5 -  11690531 --------aaa--tg
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                10871856  5 +  33672925 --------aaa--gg
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738              9904928  5 +  34209287 --------aaa--tc
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146              3118151  3 -   3193751 --------aaa----
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990               235630  7 -   2104649 --------aaagttg
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15          39449834  5 -  55688157 --------aac--tg
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                16690  5 +   6345240 --------aaa--ta
i triMan1.JH594766             C 0 C 0
s sarHar1.chr5_GL861647_random   318140 13 -   4230514 caatattCAAA--TG
i sarHar1.chr5_GL861647_random C 0 C 0
e ornAna1.Ultra479              3864917 5904 -   6008416 I
e tetNig2.chr10                 6379385  0 +  13272281 I
e punNye1.JH419232              4767720 338 +   5065651 T
e mayZeb1.JH720522               609382  0 -   6649201 I
e hapBur1.JH425491               252157  0 -   1273513 I
e neoBri1.JH422308              3491820  0 -   5414369 I
e araMac1.AOUJ01470298              637  0 -       895 I
e takFla1.KE121866               209731  0 +    220559 I
e fr3.chr10                     9064512  0 +   9126174 I
e ficAlb2.chr4A                19371809  0 +  21182716 I
e anoCar2.chrUn_GL344195          39255 4204 +     59083 I
e pseHum1.KB221209             10759694 18 +  11841479 I
e zonAlb1.KB913045             12575724 5731 +  16390125 I
e colLiv1.KB375822              2439586 31 +   2691611 I
e allMis1.JH737798                78787 358 +    106177 I
e falPer1.KB391026              1266701 11 +   1688145 I
e falChe1.KB397934              1269954 11 -   4640569 I
e macEug2.GL124958                26121  0 -     59456 I
e galGal4.chrUn_AADN03023623       2011  0 -      5081 I
e geoFor1.JH740049               182930  0 -   1550430 I
e melGal1.chr1                 24924577 4226 + 204065131 I
e anaPla1.KB742696              1254472  0 -   1270250 I
e amaVit1.KB277496                 6803 35 -     10329 I
e apaSpi1.KB929104                22324  0 +    818693 I
e cheMyd1.KB605988               134509  0 +    155857 I
e chrPic2.chrUn_KK088237v1      1206822  0 +  22294289 I
e pelSin1.JH211051                23303  0 +    476004 I
e melUnd1.JH556589              7674127 5368 -   7952740 I
e taeGut2.chr28                 3062068  0 +   4963201 I

a score=713173.000000
s hg38.chr8_KI270814v1_alt       122103  99 +    141812 ctgaaaaatatagttgta------------------------------------ata---aa---------------------------------------------------------------------------taatgaattat-aagtagcatttcaa-tgt-----------------------cagagatgttgaaatatgagaaaatgagaatctt--agaatcattgaaat
s panTro4.chr8                 55024588  99 + 143986469 ctgaaaaatatagttgta------------------------------------ata---aa---------------------------------------------------------------------------taatgaattat-aagtagcatttcaa-tgt-----------------------cagagttgttgaaatatgagaaaatgagaatctt--agaatcattgaaat
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59165175  99 + 153482349 ctgaaaaatatatttgta------------------------------------ata---aa---------------------------------------------------------------------------taatgaattat-aagtagcatttcaa-cgt-----------------------cagagatgttgaaatatgagaaaatgagaatctt--agaatcattgaaat
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                81380636  99 - 104879549 ctgcaaaatatacttgta------------------------------------ata---aa---------------------------------------------------------------------------taatgacttat-aagtggcatttcaa-tgt-----------------------cagagatgttaaaatatgagaaatagagtatctt--agaattattaaaat
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                 61692131  99 + 150158102 ctgcaaaatatagttgta------------------------------------ata---aa---------------------------------------------------------------------------taatgaattat-aagcagcattttaa-tgt-----------------------cagagatgttgaaatatgagaaaatgagcatctt--agaatcattgaaat
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                 58365964  99 + 146850525 ctgcaaaatatagttgta------------------------------------ata---aa---------------------------------------------------------------------------taatgaattat-aagcagcattttaa-tgt-----------------------cagagatgttgaaatatgagaaaatgagcatctt--agaatcattgaaat
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                 53286501  99 + 139301422 ctgcaaaatatagttgta------------------------------------ata---aa---------------------------------------------------------------------------taatgaattat-aagcagcattttaa-tgt-----------------------cagagatgttgaaatatgagaaaatgagcatctt--agaatcattgaaat
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                 33707056  99 + 155834243 ctataatatatagttgta------------------------------------aca---aa---------------------------------------------------------------------------taatgacttat-aagtggcatttcaa-ctt-----------------------cagagatgctaaaatatgagaaattgttcatctt--agaagcattaaaat
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196              4062090  99 +   9144518 tggccaattttagttgta------------------------------------ata---ag---------------------------------------------------------------------------tcaagaattat-aagtgggattctaa-tgt-----------------------tagagatgggaaaatatgagcaaatgagccactt--agaattatcaaaat
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762              1561496  99 -   1847653 ctgcctgttatagttata------------------------------------aga---aa---------------------------------------------------------------------------tcatgaatttt-aagtggaattttaa-tgt-----------------------cacagatgttaaaatgtgagaaaatgagcatctg--ataatcactgaaat
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521              1178928  96 -   7152218 ctgccaactgtggttgta------------------------------------aga---ca------------------------------------------------------------------------------tgagtttt-aaattgctttccca-tgt-----------------------cagagatgttgaagagtgagaaaatgagcatgtt--agaatcattgaagt
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                 7502  96 -     34802 ctgccaactgtggttgta------------------------------------aga---ca------------------------------------------------------------------------------tgagtttt-aaattgccttcccg-tgt-----------------------cagagatgttgaggagtgagaaaatgagcatgtt--agaatcattgaagt
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915              2912248  99 -  11690531 ctaccaattatagttgta------------------------------------agacatca------------------------------------------------------------------------------tgaattat-aaatttcactccaa-cgt-----------------------cagagatgttaaaatgtgagaaaatgagcatatt--agaatcactgaagt
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                10871861  99 +  33672925 ctgtccattgtagttgta------------------------------------tga---ca---------------------------------------------------------------------------ttatgaataat-aagttgcattccag-tgt-----------------------cagagatgttaaaatgtgagaaaatgagcatctt--agaatcattgagat
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738              9904933  99 +  34209287 ctgtgtattatagttgta------------------------------------aga---ca---------------------------------------------------------------------------ttatgaattat-aagttgcattccaa-tgt-----------------------cagagatgttaaaatgtgagaaaatgagcatctt--agaatcattgaaat
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146              3118154  98 -   3193751 -taccaattataattgta------------------------------------aga---ta---------------------------------------------------------------------------gtctgaattat-aaattgcatttcac-tga-----------------------cagaaatgttaaaatgtaagaaagtaagcatctt--agaatcactgaaat
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990               235637 224 -   2104649 ctgccaattatagttgtaagacattctgaattataaattgcatcccaatgtcagaga---tgttaaaatgtgaaaaaataagcatattagaatcattgaaatacagTGTACTTTTAAT---TCTTAAAAC-----ACATCTGCAAAGT-AGATATGATTTTAC-TTAATTGATATGTCTTTGTAAAGTTGTAGCAATAGTAATAATTATAATAATACA-ATCTA--AAAATTATTGAGAT
i myoLuc2.GL429990             C 0 I 312
s loxAfr3.scaffold_15          39449839  94 -  55688157 ccaccagttataattgta------------------------------------aga---tc--------------------------------------------------------------------------------agttat-aagtagcattccag-tgt-----------------------caaagttgttaaaatgtgagaaaatgagcacctt--agaataatagaaat
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                16695  94 +   6345240 ctgccaattatagttgta------------------------------------aga---tc--------------------------------------------------------------------------------agttat-cagttgcattccag-tgt-----------------------caaagttgttaaaatatgagaaaatgaccatctt--agaataattgaaat
i triMan1.JH594766             C 0 C 0
s sarHar1.chr5_GL861647_random   318153  86 -   4230514 TG--TAAATGTTTTTCTA------------------------------------AGG---CA----------------------------------------------------------------------------gttgctttat-aaactattttgtaattgt-----------------------caataCTCTTA----GTGGAAAAAAGTTGTTATT--AGACTTA-------
i sarHar1.chr5_GL861647_random C 0 C 0
s tetNig2.chr13                 4299193 120 -  13302670 CTGAAACAGATGATTGGG------------------------------------ACA---AA----------------------------------------------TAGTCCCAACATAGCGCAGAACTGCAGCATCGTGCACCATGAAGAAGTTTTTCAG-CCT-----------------------CACGAA-----------GAAAAAGAAACGCTCTTCAGGAACCCCTGACAG
i tetNig2.chr13                T 851 I 4
e ornAna1.Ultra479              3864917 5904 -   6008416 I
e punNye1.JH419232              4767720 338 +   5065651 T
e mayZeb1.JH720522               609382   0 -   6649201 I
e hapBur1.JH425491               252157   0 -   1273513 I
e neoBri1.JH422308              3491820   0 -   5414369 I
e araMac1.AOUJ01470298              637   0 -       895 I
e takFla1.KE121866               209731   0 +    220559 I
e fr3.chr10                     9064512   0 +   9126174 I
e ficAlb2.chr4A                19371809   0 +  21182716 I
e anoCar2.chrUn_GL344195          39255 4204 +     59083 I
e pseHum1.KB221209             10759694  18 +  11841479 I
e zonAlb1.KB913045             12575724 5731 +  16390125 I
e colLiv1.KB375822              2439586  31 +   2691611 I
e allMis1.JH737798                78787 358 +    106177 I
e falPer1.KB391026              1266701  11 +   1688145 I
e falChe1.KB397934              1269954  11 -   4640569 I
e macEug2.GL124958                26121   0 -     59456 I
e galGal4.chrUn_AADN03023623       2011   0 -      5081 I
e geoFor1.JH740049               182930   0 -   1550430 I
e melGal1.chr1                 24924577 4226 + 204065131 I
e anaPla1.KB742696              1254472   0 -   1270250 I
e amaVit1.KB277496                 6803  35 -     10329 I
e apaSpi1.KB929104                22324   0 +    818693 I
e cheMyd1.KB605988               134509   0 +    155857 I
e chrPic2.chrUn_KK088237v1      1206822   0 +  22294289 I
e pelSin1.JH211051                23303   0 +    476004 I
e melUnd1.JH556589              7674127 5368 -   7952740 I
e taeGut2.chr28                 3062068   0 +   4963201 I

a score=226776.000000
s hg38.chr8_KI270814v1_alt       122202  57 +    141812 acagTCTTATCTCGAAC----------------------------------------------------------------------------------CTT--T----AAATCATAAC-ACAAAGGAAGTATAATGGTACCATTT
s panTro4.chr8                 55024687  57 + 143986469 acagTCTTATCTCGAAC----------------------------------------------------------------------------------CAT--T----AAATCATAGC-ACAAAGGAAGTATAATGGTACCATTT
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                 59165274  57 + 153482349 acagTCTTATCTCGAAC----------------------------------------------------------------------------------CTT--T----AAATCATAGC-ACAAAGGAAGTATAATGGTACCATTT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                81380735  57 - 104879549 acagTTTTATCTCTAAC----------------------------------------------------------------------------------CTT--T----AAAACATACC-ACAAAGTAGGCATAATTGTACCATTT
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                 61692230  57 + 150158102 gcagTCTTATCTCGAAC----------------------------------------------------------------------------------CTT--T----AAAACATAGC-ACAAAGGAAGTGTAATGGTACCATTT
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                 58366063  57 + 146850525 acagTCTTATCTCGAAC----------------------------------------------------------------------------------CTT--T----AAAACATAGC-ACAAAGGAAGTGTAATGGTACCATTT
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                 53286600  57 + 139301422 acagTCTTATCTCAAAC----------------------------------------------------------------------------------CTT--T----AAAACATAGC-ACAGAGGAAGTGTAATGGTACCATTT
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                 33707155  57 + 155834243 acagTGTTACCTCCAAC----------------------------------------------------------------------------------CTT--T----AAAACACACC-ACAAAGTAGGCATAATTGTACCATTT
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196              4062189  56 +   9144518 acAATGTTACCTCTAAT----------------------------------------------------------------------------------GTT--T-----AAACATACC-TCAAAGTAGATATAATTGTATCATTT
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762              1561595  59 -   1847653 aTAATATTATCTCTTAA----------------------------------------------------------------------------------TTT--TTAATAAAACCTAGT-GCTA--GTACTACAATTATATCATTT
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521              1179024  50 -   7152218 acagTGTTCTCTCTCAT----------------------------------------------------------------------------------CCT--T----GCAGCA-----GCAAAGTAGGTATAC---TATCATTT
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                 7598  50 -     34802 acagTGTTCTCTCTCAT----------------------------------------------------------------------------------CCT--T----GCAGCA-----GCAAAGTAGGTATAC---TATCATTT
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915              2912347  55 -  11690531 acagTGTTCTCTCTAGT----------------------------------------------------------------------------------CCT--C----AAGACATATCTTCAAAAGAGGTATAA---TATCCTTT
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                10871960  58 +  33672925 acagtgttctctctaat----------------------------------------------------------------------------------cct--t----aaaacatatctgcaaagtacatatgattgtatcattt
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738              9905032  58 +  34209287 acagtgttctctctaat----------------------------------------------------------------------------------cct--t----aaaacatatctgcgaaggaggtatgactgtatcattt
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146              3118252  53 -   3193751 acTGTGTTCTTTCTAAT----------------------------------------------------------------------------------CCT--C----AAGAC--ATCTGCAAAATAGGCATAA---TATAATTT
i pteAle1.KB031146             C 0 C 0
s loxAfr3.scaffold_15          39449933 134 -  55688157 atagTATTAACTCTAATTCTTGATAaaaacacaacccactgccgtctagtcgattccaactcatagcgaccctataggacagagtagaactgcccAAATTCT--T----GATACATATCTATAAACTAGAAACAA------AATGT
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                16789  56 +   6345240 acagTATTATCTCTAAT----------------------------------------------------------------------------------TCT--T----GATATATATCTGCAAAATAGAAACAAT--TGTCATTT
i triMan1.JH594766             C 0 C 0
s sarHar1.chr5_GL861647_random   318239  51 -   4230514 ACAG--------CCAAA----------------------------------------------------------------------------------CTTGGT----GATGCATAGC-AGTAATCCCATATACTAGTGAGGTCT
i sarHar1.chr5_GL861647_random C 0 C 0
s tetNig2.chr13                 4299317  52 -  13302670 AGTGTCCTTTCTGGAGG----------------------------------------------------------------------------------ATA--T----GAACTAAAAG-ACAAGGACCTTGGAAAAGtac-----
i tetNig2.chr13                I 4 C 0
e myoLuc2.GL429990               235861 312 -   2104649 I
e ornAna1.Ultra479              3864917 5904 -   6008416 I
e punNye1.JH419232              4767720 338 +   5065651 T
e mayZeb1.JH720522               609382   0 -   6649201 I
e hapBur1.JH425491               252157   0 -   1273513 I
e neoBri1.JH422308              3491820   0 -   5414369 I
e araMac1.AOUJ01470298              637   0 -       895 I
e takFla1.KE121866               209731   0 +    220559 I
e fr3.chr10                     9064512   0 +   9126174 I
e ficAlb2.chr4A                19371809   0 +  21182716 I
e anoCar2.chrUn_GL344195          39255 4204 +     59083 I
e pseHum1.KB221209             10759694  18 +  11841479 I
e zonAlb1.KB913045             12575724 5731 +  16390125 I
e colLiv1.KB375822              2439586  31 +   2691611 I
e allMis1.JH737798                78787 358 +    106177 I
e falPer1.KB391026              1266701  11 +   1688145 I
e falChe1.KB397934              1269954  11 -   4640569 I
e macEug2.GL124958                26121   0 -     59456 I
e galGal4.chrUn_AADN03023623       2011   0 -      5081 I
e geoFor1.JH740049               182930   0 -   1550430 I
e melGal1.chr1                 24924577 4226 + 204065131 I
e anaPla1.KB742696              1254472   0 -   1270250 I
e amaVit1.KB277496                 6803  35 -     10329 I
e apaSpi1.KB929104                22324   0 +    818693 I
e cheMyd1.KB605988               134509   0 +    155857 I
e chrPic2.chrUn_KK088237v1      1206822   0 +  22294289 I
e pelSin1.JH211051                23303   0 +    476004 I
e melUnd1.JH556589              7674127 5368 -   7952740 I
e taeGut2.chr28                 3062068   0 +   4963201 I

a score=48078.000000
s hg38.chr8_KI270814v1_alt        122259 7 +    141812 TACCTAA
s panTro4.chr8                  55024744 7 + 143986469 TACCTAA
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59165331 7 + 153482349 TACCTAA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81380792 3 - 104879549 TAC----
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61692287 7 + 150158102 TACCTAA
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366120 7 + 146850525 TACCTAA
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53286657 7 + 139301422 TACCTAA
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33707212 4 + 155834243 TACT---
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4062245 7 +   9144518 TACTTAA
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1561654 7 -   1847653 TACTTCA
i otoGar3.GL873762             C 0 I 118
s vicPac2.KB632521               1179074 7 -   7152218 TACTTAA
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                  7648 7 -     34802 TACTTAA
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2912402 7 -  11690531 TACTTAA
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10872018 7 +  33672925 tacTTAA
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9905090 7 +  34209287 tacTTAA
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3118305 7 -   3193751 TACTTAG
i pteAle1.KB031146             C 0 C 0
s loxAfr3.scaffold_15           39450067 7 -  55688157 TACTGAA
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 16845 7 +   6345240 TACTCGA
i triMan1.JH594766             C 0 C 0
s monDom5.chr8                 137892930 7 - 312544902 tatataa
i monDom5.chr8                 N 0 C 0
s sarHar1.chr5_GL861647_random    318290 4 -   4230514 ---AAGG
i sarHar1.chr5_GL861647_random C 0 C 0
e myoLuc2.GL429990                235861 312 -   2104649 I
e ornAna1.Ultra479               3864917 5904 -   6008416 I
e tetNig2.chr13                  4299369 0 -  13302670 C
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE121866                209731 0 +    220559 I
e fr3.chr10                      9064512 0 +   9126174 I
e ficAlb2.chr4A                 19371809 0 +  21182716 I
e anoCar2.chrUn_GL344195           39255 4204 +     59083 I
e pseHum1.KB221209              10759694 18 +  11841479 I
e zonAlb1.KB913045              12575724 5731 +  16390125 I
e colLiv1.KB375822               2439586 31 +   2691611 I
e allMis1.JH737798                 78787 358 +    106177 I
e falPer1.KB391026               1266701 11 +   1688145 I
e falChe1.KB397934               1269954 11 -   4640569 I
e macEug2.GL124958                 26121 0 -     59456 I
e galGal4.chrUn_AADN03023623        2011 0 -      5081 I
e geoFor1.JH740049                182930 0 -   1550430 I
e melGal1.chr1                  24924577 4226 + 204065131 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.KB277496                  6803 35 -     10329 I
e apaSpi1.KB929104                 22324 0 +    818693 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK088237v1       1206822 0 +  22294289 I
e pelSin1.JH211051                 23303 0 +    476004 I
e melUnd1.JH556589               7674127 5368 -   7952740 I
e taeGut2.chr28                  3062068 0 +   4963201 I

a score=51346.000000
s hg38.chr8_KI270814v1_alt        122266 8 +    141812 TTAAAATG
s panTro4.chr8                  55024751 8 + 143986469 TTAAAATG
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59165338 8 + 153482349 TTAAAATG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81380795 8 - 104879549 TTAAAATG
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61692294 8 + 150158102 TTAAGATG
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366127 8 + 146850525 TTAAGATG
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53286664 8 + 139301422 TTAAGATG
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33707216 7 + 155834243 -TAAAATG
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4062252 8 +   9144518 CTAAAATC
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1561779 8 -   1847653 TTAATGTG
i otoGar3.GL873762             I 118 C 0
s vicPac2.KB632521               1179081 8 -   7152218 TTGAAATA
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                  7655 8 -     34802 TTGAAATA
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2912409 8 -  11690531 TTGAAATG
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10872025 8 +  33672925 TTGAAATG
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9905097 8 +  34209287 TTGAAATG
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3118312 8 -   3193751 TTGAAATA
i pteAle1.KB031146             C 0 C 0
s loxAfr3.scaffold_15           39450074 6 -  55688157 TTGAAA--
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 16852 8 +   6345240 CTGAAGTG
i triMan1.JH594766             C 0 C 0
s monDom5.chr8                 137892937 8 - 312544902 ctattatg
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    318294 7 -   4230514 CTGGCA-G
i sarHar1.chr5_GL861647_random C 0 C 0
s tetNig2.chr13                  4299369 6 -  13302670 acaaag--
i tetNig2.chr13                C 0 C 0
e myoLuc2.GL429990                235861 312 -   2104649 I
e ornAna1.Ultra479               3864917 5904 -   6008416 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE121866                209731 0 +    220559 I
e fr3.chr10                      9064512 0 +   9126174 I
e ficAlb2.chr4A                 19371809 0 +  21182716 I
e anoCar2.chrUn_GL344195           39255 4204 +     59083 I
e pseHum1.KB221209              10759694 18 +  11841479 I
e zonAlb1.KB913045              12575724 5731 +  16390125 I
e colLiv1.KB375822               2439586 31 +   2691611 I
e allMis1.JH737798                 78787 358 +    106177 I
e falPer1.KB391026               1266701 11 +   1688145 I
e falChe1.KB397934               1269954 11 -   4640569 I
e macEug2.GL124958                 26121 0 -     59456 I
e galGal4.chrUn_AADN03023623        2011 0 -      5081 I
e geoFor1.JH740049                182930 0 -   1550430 I
e melGal1.chr1                  24924577 4226 + 204065131 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.KB277496                  6803 35 -     10329 I
e apaSpi1.KB929104                 22324 0 +    818693 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK088237v1       1206822 0 +  22294289 I
e pelSin1.JH211051                 23303 0 +    476004 I
e melUnd1.JH556589               7674127 5368 -   7952740 I
e taeGut2.chr28                  3062068 0 +   4963201 I

a score=75924.000000
s hg38.chr8_KI270814v1_alt        122274 28 +    141812 TTGTCTTTAT---------TAA--------------------G----------TA-G------TAGTAATAATT
s panTro4.chr8                  55024759 28 + 143986469 TTGTCTTTAT---------TAA--------------------G----------TA-G------TAGTAATAATT
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59165346 28 + 153482349 TTGTCTTTAT---------TAA--------------------G----------CA-G------TAGTAATAATT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81380803 28 - 104879549 CTTTGTTTGT---------TAA--------------------G----------TA-G------TAGAAATAATT
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61692302 28 + 150158102 TTGTCTTTAA---------TAA--------------------G----------TA-G------TAGTAATAATT
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366135 28 + 146850525 TTGTCTTTAA---------TAA--------------------G----------TA-G------TAGTAATAATT
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53286672 28 + 139301422 TTGTCTTTAT---------TAA--------------------G----------TA-G------TAGTAATAATT
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33707223 28 + 155834243 TTGTCCTTGT---------TAA--------------------G----------TA-G------TAGTAATAATT
i calJac3.chr7                 C 0 I 130
s saiBol1.JH378196               4062260 34 +   9144518 TTGTCTTTGT---------TAA--------------------G----------TA-GTAGCATTAGTAGTAATT
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1561787 27 -   1847653 TTCTCTTT-T---------TAA--------------------G----------TA-A------TAATAATGGTT
i otoGar3.GL873762             C 0 I 26
s vicPac2.KB632521               1179089 34 -   7152218 TTGTCTTTGT---------AAA--------------------A----TAGTAGTA-A------CAGTAACAATT
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                  7663 34 -     34802 TTGTCTTTGT---------AAA--------------------A----TAGTAGTA-A------CAGTAACAATT
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2912417 28 -  11690531 TTGCCCTTGT---------AAA--------------------A----------TA-A------TAGTAATAATT
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10872033 28 +  33672925 TTGTCTTTGT---------AGA--------------------G----------TA-G------TAGTAATAGTA
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9905105 28 +  34209287 TTGTCTTTGT---------AAA--------------------G----------TA-G------TAGTAATAATT
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3118320 31 -   3193751 TTATCTTCGT---------GAA--------------------A-------TCATA-A------TAGTAATAATT
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                236173 46 -   2104649 ttatccctattttgttgaggaa--------------------attgaggttcaga-a------aggcca-aatg
i myoLuc2.GL429990             I 312 C 0
s loxAfr3.scaffold_15           39450080 28 -  55688157 -TGTCTTTGT---------TTA--------------------G----------TATG------taataataata
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 16860 29 +   6345240 TTGTCTTTGT---------TTA--------------------G----------TACG------TAGTAGTAATA
i triMan1.JH594766             C 0 C 0
s monDom5.chr8                 137892945 27 - 312544902 ------ttgt---------atattatatttaacatattatat--------------------------------
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    318301  7 -   4230514 ------TTGT---------ATA----------------------------------------------------
i sarHar1.chr5_GL861647_random C 0 C 0
s tetNig2.chr13                  4299375 28 -  13302670 ctgctgcagt---------ggg--------------------T----------GA-T------GTGGGAAAGTT
i tetNig2.chr13                C 0 C 0
e ornAna1.Ultra479               3864917 5904 -   6008416 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE121866                209731  0 +    220559 I
e fr3.chr10                      9064512  0 +   9126174 I
e ficAlb2.chr4A                 19371809  0 +  21182716 I
e anoCar2.chrUn_GL344195           39255 4204 +     59083 I
e pseHum1.KB221209              10759694 18 +  11841479 I
e zonAlb1.KB913045              12575724 5731 +  16390125 I
e colLiv1.KB375822               2439586 31 +   2691611 I
e allMis1.JH737798                 78787 358 +    106177 I
e falPer1.KB391026               1266701 11 +   1688145 I
e falChe1.KB397934               1269954 11 -   4640569 I
e macEug2.GL124958                 26121  0 -     59456 I
e galGal4.chrUn_AADN03023623        2011  0 -      5081 I
e geoFor1.JH740049                182930  0 -   1550430 I
e melGal1.chr1                  24924577 4226 + 204065131 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.KB277496                  6803 35 -     10329 I
e apaSpi1.KB929104                 22324  0 +    818693 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK088237v1       1206822  0 +  22294289 I
e pelSin1.JH211051                 23303  0 +    476004 I
e melUnd1.JH556589               7674127 5368 -   7952740 I
e taeGut2.chr28                  3062068  0 +   4963201 I

a score=11329.000000
s hg38.chr8_KI270814v1_alt        122302 1 +    141812 A
s panTro4.chr8                  55024787 1 + 143986469 A
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59165374 1 + 153482349 A
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81380831 1 - 104879549 A
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61692330 1 + 150158102 A
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366163 1 + 146850525 A
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53286700 1 + 139301422 A
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33707381 1 + 155834243 a
i calJac3.chr7                 I 130 C 0
s saiBol1.JH378196               4062294 1 +   9144518 a
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1561840 1 -   1847653 a
i otoGar3.GL873762             I 26 C 0
s vicPac2.KB632521               1179123 1 -   7152218 C
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                  7697 1 -     34802 C
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2912445 1 -  11690531 A
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10872061 1 +  33672925 A
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9905133 1 +  34209287 A
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3118351 1 -   3193751 A
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                236219 1 -   2104649 a
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39450108 1 -  55688157 a
i loxAfr3.scaffold_15          C 0 I 3
s triMan1.JH594766                 16889 1 +   6345240 A
i triMan1.JH594766             C 0 I 159
s monDom5.chr8                 137892972 1 - 312544902 a
i monDom5.chr8                 C 0 I 2
s tetNig2.chr13                  4299403 1 -  13302670 A
i tetNig2.chr13                C 0 C 0
e ornAna1.Ultra479               3864917 5904 -   6008416 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE121866                209731 0 +    220559 I
e fr3.chr10                      9064512 0 +   9126174 I
e ficAlb2.chr4A                 19371809 0 +  21182716 I
e anoCar2.chrUn_GL344195           39255 4204 +     59083 I
e pseHum1.KB221209              10759694 18 +  11841479 I
e zonAlb1.KB913045              12575724 5731 +  16390125 I
e colLiv1.KB375822               2439586 31 +   2691611 I
e allMis1.JH737798                 78787 358 +    106177 I
e falPer1.KB391026               1266701 11 +   1688145 I
e falChe1.KB397934               1269954 11 -   4640569 I
e macEug2.GL124958                 26121 0 -     59456 I
e galGal4.chrUn_AADN03023623        2011 0 -      5081 I
e geoFor1.JH740049                182930 0 -   1550430 I
e sarHar1.chr5_GL861647_random    318308 0 -   4230514 C
e melGal1.chr1                  24924577 4226 + 204065131 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.KB277496                  6803 35 -     10329 I
e apaSpi1.KB929104                 22324 0 +    818693 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK088237v1       1206822 0 +  22294289 I
e pelSin1.JH211051                 23303 0 +    476004 I
e melUnd1.JH556589               7674127 5368 -   7952740 I
e taeGut2.chr28                  3062068 0 +   4963201 I

a score=-786.000000
s hg38.chr8_KI270814v1_alt        122303 1 +    141812 -T
s panTro4.chr8                  55024788 1 + 143986469 -G
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59165375 1 + 153482349 -T
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81380832 1 - 104879549 -C
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61692331 1 + 150158102 -T
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366164 1 + 146850525 -T
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53286701 1 + 139301422 -T
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33707382 1 + 155834243 -t
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4062295 1 +   9144518 -t
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1561841 1 -   1847653 -c
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1179124 1 -   7152218 -T
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                  7698 1 -     34802 -T
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2912446 1 -  11690531 -T
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10872062 1 +  33672925 -T
i equCab2.chr29                C 0 I 12
s cerSim1.JH767738               9905134 1 +  34209287 -T
i cerSim1.JH767738             C 0 I 158
s pteAle1.KB031146               3118352 1 -   3193751 -T
i pteAle1.KB031146             C 0 I 6
s myoLuc2.GL429990                236220 1 -   2104649 -t
i myoLuc2.GL429990             C 0 I 2
s loxAfr3.scaffold_15           39450112 1 -  55688157 -t
i loxAfr3.scaffold_15          I 3 C 0
s triMan1.JH594766                 17049 1 +   6345240 -t
i triMan1.JH594766             I 159 C 0
s tetNig2.chr13                  4299404 1 -  13302670 A-
i tetNig2.chr13                C 0 C 0
e ornAna1.Ultra479               3864917 5904 -   6008416 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE121866                209731 0 +    220559 I
e fr3.chr10                      9064512 0 +   9126174 I
e ficAlb2.chr4A                 19371809 0 +  21182716 I
e anoCar2.chrUn_GL344195           39255 4204 +     59083 I
e pseHum1.KB221209              10759694 18 +  11841479 I
e zonAlb1.KB913045              12575724 5731 +  16390125 I
e colLiv1.KB375822               2439586 31 +   2691611 I
e allMis1.JH737798                 78787 358 +    106177 I
e falPer1.KB391026               1266701 11 +   1688145 I
e falChe1.KB397934               1269954 11 -   4640569 I
e macEug2.GL124958                 26121 0 -     59456 I
e galGal4.chrUn_AADN03023623        2011 0 -      5081 I
e geoFor1.JH740049                182930 0 -   1550430 I
e sarHar1.chr5_GL861647_random    318308 0 -   4230514 C
e melGal1.chr1                  24924577 4226 + 204065131 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.KB277496                  6803 35 -     10329 I
e apaSpi1.KB929104                 22324 0 +    818693 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK088237v1       1206822 0 +  22294289 I
e pelSin1.JH211051                 23303 0 +    476004 I
e melUnd1.JH556589               7674127 5368 -   7952740 I
e monDom5.chr8                 137892973 2 - 312544902 I
e taeGut2.chr28                  3062068 0 +   4963201 I

a score=9732.000000
s hg38.chr8_KI270814v1_alt        122304 1 +    141812 A
s panTro4.chr8                  55024789 1 + 143986469 A
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59165376 1 + 153482349 A
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81380833 1 - 104879549 A
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61692332 1 + 150158102 A
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366165 1 + 146850525 A
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53286702 1 + 139301422 A
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33707383 1 + 155834243 g
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4062296 1 +   9144518 a
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1561842 1 -   1847653 a
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1179125 1 -   7152218 A
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                  7699 1 -     34802 A
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2912447 1 -  11690531 G
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10872075 1 +  33672925 a
i equCab2.chr29                I 12 C 0
s cerSim1.JH767738               9905293 1 +  34209287 a
i cerSim1.JH767738             I 158 C 0
s pteAle1.KB031146               3118359 1 -   3193751 a
i pteAle1.KB031146             I 6 C 0
s loxAfr3.scaffold_15           39450113 1 -  55688157 a
i loxAfr3.scaffold_15          C 0 I 159
s triMan1.JH594766                 17050 1 +   6345240 g
i triMan1.JH594766             C 0 C 0
s tetNig2.chr13                  4299405 1 -  13302670 A
i tetNig2.chr13                C 0 C 0
e myoLuc2.GL429990                236221 2 -   2104649 I
e ornAna1.Ultra479               3864917 5904 -   6008416 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE121866                209731 0 +    220559 I
e fr3.chr10                      9064512 0 +   9126174 I
e ficAlb2.chr4A                 19371809 0 +  21182716 I
e anoCar2.chrUn_GL344195           39255 4204 +     59083 I
e pseHum1.KB221209              10759694 18 +  11841479 I
e zonAlb1.KB913045              12575724 5731 +  16390125 I
e colLiv1.KB375822               2439586 31 +   2691611 I
e allMis1.JH737798                 78787 358 +    106177 I
e falPer1.KB391026               1266701 11 +   1688145 I
e falChe1.KB397934               1269954 11 -   4640569 I
e macEug2.GL124958                 26121 0 -     59456 I
e galGal4.chrUn_AADN03023623        2011 0 -      5081 I
e geoFor1.JH740049                182930 0 -   1550430 I
e sarHar1.chr5_GL861647_random    318308 0 -   4230514 C
e melGal1.chr1                  24924577 4226 + 204065131 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.KB277496                  6803 35 -     10329 I
e apaSpi1.KB929104                 22324 0 +    818693 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK088237v1       1206822 0 +  22294289 I
e pelSin1.JH211051                 23303 0 +    476004 I
e melUnd1.JH556589               7674127 5368 -   7952740 I
e monDom5.chr8                 137892973 2 - 312544902 I
e taeGut2.chr28                  3062068 0 +   4963201 I

a score=44585.000000
s hg38.chr8_KI270814v1_alt        122305 3 +    141812 ATA
s panTro4.chr8                  55024790 3 + 143986469 ATA
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59165377 3 + 153482349 ATA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81380834 3 - 104879549 ATA
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61692333 3 + 150158102 ata
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366166 3 + 146850525 ata
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53286703 3 + 139301422 ata
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33707384 3 + 155834243 ata
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4062297 3 +   9144518 ata
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1561843 3 -   1847653 gta
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1179126 3 -   7152218 ATA
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                  7700 3 -     34802 ATA
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2912448 3 -  11690531 ata
i orcOrc1.KB316915             C 0 I 179
s equCab2.chr29                 10872076 3 +  33672925 gta
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9905294 3 +  34209287 ata
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3118360 3 -   3193751 tta
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                236223 3 -   2104649 ata
i myoLuc2.GL429990             I 2 C 0
s loxAfr3.scaffold_15           39450273 3 -  55688157 ata
i loxAfr3.scaffold_15          I 159 I 1
s triMan1.JH594766                 17051 3 +   6345240 ata
i triMan1.JH594766             C 0 I 1
s monDom5.chr8                 137892975 3 - 312544902 ata
i monDom5.chr8                 I 2 I 1
s tetNig2.chr13                  4299406 3 -  13302670 AGA
i tetNig2.chr13                C 0 C 0
e ornAna1.Ultra479               3864917 5904 -   6008416 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE121866                209731 0 +    220559 I
e fr3.chr10                      9064512 0 +   9126174 I
e ficAlb2.chr4A                 19371809 0 +  21182716 I
e anoCar2.chrUn_GL344195           39255 4204 +     59083 I
e pseHum1.KB221209              10759694 18 +  11841479 I
e zonAlb1.KB913045              12575724 5731 +  16390125 I
e colLiv1.KB375822               2439586 31 +   2691611 I
e allMis1.JH737798                 78787 358 +    106177 I
e falPer1.KB391026               1266701 11 +   1688145 I
e falChe1.KB397934               1269954 11 -   4640569 I
e macEug2.GL124958                 26121 0 -     59456 I
e galGal4.chrUn_AADN03023623        2011 0 -      5081 I
e geoFor1.JH740049                182930 0 -   1550430 I
e sarHar1.chr5_GL861647_random    318308 0 -   4230514 C
e melGal1.chr1                  24924577 4226 + 204065131 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.KB277496                  6803 35 -     10329 I
e apaSpi1.KB929104                 22324 0 +    818693 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK088237v1       1206822 0 +  22294289 I
e pelSin1.JH211051                 23303 0 +    476004 I
e melUnd1.JH556589               7674127 5368 -   7952740 I
e taeGut2.chr28                  3062068 0 +   4963201 I

a score=-3779.000000
s hg38.chr8_KI270814v1_alt        122308 1 +    141812 -T
s panTro4.chr8                  55024793 1 + 143986469 -T
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59165380 1 + 153482349 -T
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81380837 1 - 104879549 -T
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61692336 1 + 150158102 -t
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366169 1 + 146850525 -t
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53286706 1 + 139301422 -t
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33707387 1 + 155834243 -t
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4062300 1 +   9144518 -t
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1561846 1 -   1847653 -t
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1179129 1 -   7152218 -T
i vicPac2.KB632521             C 0 I 157
s camFer1.KB018161                  7703 1 -     34802 -T
i camFer1.KB018161             C 0 I 157
s equCab2.chr29                 10872079 1 +  33672925 -t
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9905297 1 +  34209287 -g
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3118363 1 -   3193751 -c
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                236226 1 -   2104649 -g
i myoLuc2.GL429990             C 0 C 0
s tetNig2.chr13                  4299409 1 -  13302670 A-
i tetNig2.chr13                C 0 C 0
e ornAna1.Ultra479               3864917 5904 -   6008416 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE121866                209731 0 +    220559 I
e fr3.chr10                      9064512 0 +   9126174 I
e ficAlb2.chr4A                 19371809 0 +  21182716 I
e anoCar2.chrUn_GL344195           39255 4204 +     59083 I
e pseHum1.KB221209              10759694 18 +  11841479 I
e zonAlb1.KB913045              12575724 5731 +  16390125 I
e colLiv1.KB375822               2439586 31 +   2691611 I
e allMis1.JH737798                 78787 358 +    106177 I
e falPer1.KB391026               1266701 11 +   1688145 I
e falChe1.KB397934               1269954 11 -   4640569 I
e macEug2.GL124958                 26121 0 -     59456 I
e galGal4.chrUn_AADN03023623        2011 0 -      5081 I
e geoFor1.JH740049                182930 0 -   1550430 I
e sarHar1.chr5_GL861647_random    318308 0 -   4230514 C
e melGal1.chr1                  24924577 4226 + 204065131 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.KB277496                  6803 35 -     10329 I
e apaSpi1.KB929104                 22324 0 +    818693 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK088237v1       1206822 0 +  22294289 I
e pelSin1.JH211051                 23303 0 +    476004 I
e melUnd1.JH556589               7674127 5368 -   7952740 I
e monDom5.chr8                 137892978 1 - 312544902 I
e taeGut2.chr28                  3062068 0 +   4963201 I
e triMan1.JH594766                 17054 1 +   6345240 I
e loxAfr3.scaffold_15           39450276 1 -  55688157 I
e orcOrc1.KB316915               2912451 179 -  11690531 I

a score=52326.000000
s hg38.chr8_KI270814v1_alt        122309 4 +    141812 CTAG
s panTro4.chr8                  55024794 4 + 143986469 CTAG
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59165381 4 + 153482349 CTAG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81380838 4 - 104879549 ctaa
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61692337 4 + 150158102 ctag
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366170 4 + 146850525 ctag
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53286707 4 + 139301422 ctag
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33707388 4 + 155834243 ctag
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4062301 4 +   9144518 ctaa
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1561847 4 -   1847653 ctaa
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1179287 4 -   7152218 ctaa
i vicPac2.KB632521             I 157 C 0
s camFer1.KB018161                  7861 4 -     34802 ctaa
i camFer1.KB018161             I 157 C 0
s equCab2.chr29                 10872080 4 +  33672925 ctaa
i equCab2.chr29                C 0 I 156
s cerSim1.JH767738               9905298 4 +  34209287 ctaa
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3118364 4 -   3193751 ctaa
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                236227 4 -   2104649 ctaa
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39450277 4 -  55688157 ctaa
i loxAfr3.scaffold_15          I 1 C 0
s triMan1.JH594766                 17055 4 +   6345240 ctaa
i triMan1.JH594766             I 1 C 0
s monDom5.chr8                 137892979 4 - 312544902 ctat
i monDom5.chr8                 I 1 C 0
s tetNig2.chr13                  4299410 4 -  13302670 CTTG
i tetNig2.chr13                C 0 C 0
e ornAna1.Ultra479               3864917 5904 -   6008416 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE121866                209731 0 +    220559 I
e fr3.chr10                      9064512 0 +   9126174 I
e ficAlb2.chr4A                 19371809 0 +  21182716 I
e anoCar2.chrUn_GL344195           39255 4204 +     59083 I
e pseHum1.KB221209              10759694 18 +  11841479 I
e zonAlb1.KB913045              12575724 5731 +  16390125 I
e colLiv1.KB375822               2439586 31 +   2691611 I
e allMis1.JH737798                 78787 358 +    106177 I
e falPer1.KB391026               1266701 11 +   1688145 I
e falChe1.KB397934               1269954 11 -   4640569 I
e macEug2.GL124958                 26121 0 -     59456 I
e galGal4.chrUn_AADN03023623        2011 0 -      5081 I
e geoFor1.JH740049                182930 0 -   1550430 I
e sarHar1.chr5_GL861647_random    318308 0 -   4230514 C
e melGal1.chr1                  24924577 4226 + 204065131 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.KB277496                  6803 35 -     10329 I
e apaSpi1.KB929104                 22324 0 +    818693 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK088237v1       1206822 0 +  22294289 I
e pelSin1.JH211051                 23303 0 +    476004 I
e melUnd1.JH556589               7674127 5368 -   7952740 I
e taeGut2.chr28                  3062068 0 +   4963201 I
e orcOrc1.KB316915               2912451 179 -  11690531 I

a score=10424.000000
s hg38.chr8_KI270814v1_alt        122313 2 +    141812 CA
s panTro4.chr8                  55024798 2 + 143986469 CA
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59165385 2 + 153482349 CA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81380842 2 - 104879549 ca
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61692341 2 + 150158102 ca
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366174 2 + 146850525 ca
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53286711 2 + 139301422 ca
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33707392 2 + 155834243 ta
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4062305 2 +   9144518 ca
i saiBol1.JH378196             C 0 I 156
s otoGar3.GL873762               1561851 2 -   1847653 ca
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1179291 2 -   7152218 ta
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                  7865 2 -     34802 ta
i camFer1.KB018161             C 0 C 0
s equCab2.chr29                 10872240 2 +  33672925 ta
i equCab2.chr29                I 156 C 0
s cerSim1.JH767738               9905302 2 +  34209287 ga
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3118368 2 -   3193751 ca
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                236231 2 -   2104649 ta
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39450281 2 -  55688157 ta
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 17059 2 +   6345240 ta
i triMan1.JH594766             C 0 C 0
s monDom5.chr8                 137892983 2 - 312544902 ta
i monDom5.chr8                 C 0 I 1
s tetNig2.chr13                  4299414 1 -  13302670 C-
i tetNig2.chr13                C 0 C 0
e ornAna1.Ultra479               3864917 5904 -   6008416 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE121866                209731 0 +    220559 I
e fr3.chr10                      9064512 0 +   9126174 I
e ficAlb2.chr4A                 19371809 0 +  21182716 I
e anoCar2.chrUn_GL344195           39255 4204 +     59083 I
e pseHum1.KB221209              10759694 18 +  11841479 I
e zonAlb1.KB913045              12575724 5731 +  16390125 I
e colLiv1.KB375822               2439586 31 +   2691611 I
e allMis1.JH737798                 78787 358 +    106177 I
e falPer1.KB391026               1266701 11 +   1688145 I
e falChe1.KB397934               1269954 11 -   4640569 I
e macEug2.GL124958                 26121 0 -     59456 I
e galGal4.chrUn_AADN03023623        2011 0 -      5081 I
e geoFor1.JH740049                182930 0 -   1550430 I
e sarHar1.chr5_GL861647_random    318308 0 -   4230514 C
e melGal1.chr1                  24924577 4226 + 204065131 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.KB277496                  6803 35 -     10329 I
e apaSpi1.KB929104                 22324 0 +    818693 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK088237v1       1206822 0 +  22294289 I
e pelSin1.JH211051                 23303 0 +    476004 I
e melUnd1.JH556589               7674127 5368 -   7952740 I
e taeGut2.chr28                  3062068 0 +   4963201 I
e orcOrc1.KB316915               2912451 179 -  11690531 I

a score=10438.000000
s hg38.chr8_KI270814v1_alt        122315 1 +    141812 A
s panTro4.chr8                  55024800 1 + 143986469 A
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59165387 1 + 153482349 A
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81380844 1 - 104879549 a
i nomLeu3.chr18                C 0 I 156
s rheMac3.chr8                  61692343 1 + 150158102 a
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366176 1 + 146850525 a
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53286713 1 + 139301422 a
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33707394 1 + 155834243 a
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4062463 1 +   9144518 a
i saiBol1.JH378196             I 156 C 0
s otoGar3.GL873762               1561853 1 -   1847653 a
i otoGar3.GL873762             C 0 I 151
s vicPac2.KB632521               1179293 1 -   7152218 a
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                  7867 1 -     34802 a
i camFer1.KB018161             C 0 C 0
s equCab2.chr29                 10872242 1 +  33672925 a
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9905304 1 +  34209287 a
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3118370 1 -   3193751 a
i pteAle1.KB031146             C 0 I 202
s myoLuc2.GL429990                236233 1 -   2104649 c
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39450283 1 -  55688157 a
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 17061 1 +   6345240 a
i triMan1.JH594766             C 0 C 0
e ornAna1.Ultra479               3864917 5904 -   6008416 I
e tetNig2.chr13                  4299415 0 -  13302670 C
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE121866                209731 0 +    220559 I
e fr3.chr10                      9064512 0 +   9126174 I
e ficAlb2.chr4A                 19371809 0 +  21182716 I
e anoCar2.chrUn_GL344195           39255 4204 +     59083 I
e pseHum1.KB221209              10759694 18 +  11841479 I
e zonAlb1.KB913045              12575724 5731 +  16390125 I
e colLiv1.KB375822               2439586 31 +   2691611 I
e allMis1.JH737798                 78787 358 +    106177 I
e falPer1.KB391026               1266701 11 +   1688145 I
e falChe1.KB397934               1269954 11 -   4640569 I
e macEug2.GL124958                 26121 0 -     59456 I
e galGal4.chrUn_AADN03023623        2011 0 -      5081 I
e geoFor1.JH740049                182930 0 -   1550430 I
e sarHar1.chr5_GL861647_random    318308 0 -   4230514 C
e melGal1.chr1                  24924577 4226 + 204065131 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.KB277496                  6803 35 -     10329 I
e apaSpi1.KB929104                 22324 0 +    818693 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK088237v1       1206822 0 +  22294289 I
e pelSin1.JH211051                 23303 0 +    476004 I
e melUnd1.JH556589               7674127 5368 -   7952740 I
e monDom5.chr8                 137892985 1 - 312544902 I
e taeGut2.chr28                  3062068 0 +   4963201 I
e orcOrc1.KB316915               2912451 179 -  11690531 I

a score=2567.000000
s hg38.chr8_KI270814v1_alt        122316 10 +    141812 GCGAAAGATC
s panTro4.chr8                  55024801 10 + 143986469 GCGAAAGATC
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59165388 10 + 153482349 GCGAAAGATC
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81381001 10 - 104879549 gtgaaagact
i nomLeu3.chr18                I 156 C 0
s rheMac3.chr8                  61692344 10 + 150158102 gtgaaagatc
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366177 10 + 146850525 gtgaaagatc
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53286714 10 + 139301422 gtgaaagatc
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33707395 10 + 155834243 gtgaaagacc
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4062464 10 +   9144518 atgacagagt
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1562005 10 -   1847653 atgacagagc
i otoGar3.GL873762             I 151 C 0
s vicPac2.KB632521               1179294  9 -   7152218 gtgacagag-
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                  7868  9 -     34802 gtgacagag-
i camFer1.KB018161             C 0 C 0
s equCab2.chr29                 10872243  9 +  33672925 atgacacag-
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9905305  9 +  34209287 gtgacagag-
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3118573  7 -   3193751 gtgac--ag-
i pteAle1.KB031146             I 202 C 0
s myoLuc2.GL429990                236234  7 -   2104649 atgac--ag-
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39450284  7 -  55688157 gcgacag---
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 17062  9 +   6345240 gtgacagaa-
i triMan1.JH594766             C 0 C 0
s monDom5.chr8                 137892986  8 - 312544902 --GGGGGAGT
i monDom5.chr8                 I 1 I 11
s sarHar1.chr5_GL861647_random    318308  8 -   4230514 --AGGAGAGG
i sarHar1.chr5_GL861647_random C 0 I 13
s tetNig2.chr13                  4299415  5 -  13302670 -CGAAA----
i tetNig2.chr13                C 0 C 0
e ornAna1.Ultra479               3864917 5904 -   6008416 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE121866                209731  0 +    220559 I
e fr3.chr10                      9064512  0 +   9126174 I
e ficAlb2.chr4A                 19371809  0 +  21182716 I
e anoCar2.chrUn_GL344195           39255 4204 +     59083 I
e pseHum1.KB221209              10759694 18 +  11841479 I
e zonAlb1.KB913045              12575724 5731 +  16390125 I
e colLiv1.KB375822               2439586 31 +   2691611 I
e allMis1.JH737798                 78787 358 +    106177 I
e falPer1.KB391026               1266701 11 +   1688145 I
e falChe1.KB397934               1269954 11 -   4640569 I
e macEug2.GL124958                 26121  0 -     59456 I
e galGal4.chrUn_AADN03023623        2011  0 -      5081 I
e geoFor1.JH740049                182930  0 -   1550430 I
e melGal1.chr1                  24924577 4226 + 204065131 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.KB277496                  6803 35 -     10329 I
e apaSpi1.KB929104                 22324  0 +    818693 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK088237v1       1206822  0 +  22294289 I
e pelSin1.JH211051                 23303  0 +    476004 I
e melUnd1.JH556589               7674127 5368 -   7952740 I
e taeGut2.chr28                  3062068  0 +   4963201 I
e orcOrc1.KB316915               2912451 179 -  11690531 I

a score=475386.000000
s hg38.chr8_KI270814v1_alt        122326 71 +    141812 -TTAAAATA-GTATTCAA-------------------GTGCA----------AGATCAACTAAACCGAGAG-------GCCAAGCTCTTTCTG--------TCCAAATAGGTCACTC
s panTro4.chr8                  55024811 71 + 143986469 -TTAAAATA-GTATTCAA-------------------GTGCA----------AGGTCAACTAAACCGACAG-------GCCAAGCTCTTTCTA--------TCCAAATAGGTCACTC
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59165398 71 + 153482349 -TTAAAATA-GTATTCAA-------------------GTGCA----------AGCTCAACTGAACCGAGAG-------GCCAAGATCTTTCTA--------TCCAAATAGGTCGCTC
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81381011 71 - 104879549 -ttaaagta-atattcaa-------------------gccca----------agttgaactgaatccaaag-------gccaagctctttcta--------ttcaaataggccactc
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61692354 71 + 150158102 -ttaaaata-gtattcaa-------------------ctgca----------ggttcaactgaacccaaag-------gccaagctctttcta--------ttCAAATAGGTCATTC
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366187 71 + 146850525 -ttaaaata-gtattcaa-------------------ctgca----------ggttcaactgaacccaaag-------gccaagctctttcta--------ttCAAATAGGTCATTC
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53286724 71 + 139301422 -ttaaaata-gtattcaa-------------------ctgca----------ggttcaactgaacccaaag-------cccaagctctttcta--------ttCAAATAGGTCATTC
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33707405 71 + 155834243 -ttaacata-atatccaa-------------------cccca----------agttgaaatgaatccaaag-------gccaagctctttcTG--------TTCAAATAGGCCACTC
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4062474 71 +   9144518 -ttaaagta-ggattcct-------------------gtcca----------agttgaactgaatccaaag-------gccaaagtatttcta--------ttgaaataggccgctc
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1562015 70 -   1847653 -ttaaagtagggatttaa-------------------gctaa----------aattgaactgcttctagag-------gtcgagctcttTTCA--------TTCAAATAGGC--TTC
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1179303 71 -   7152218 -ttaaagta-gaagtcag-------------------accca----------aattgagccgaatctcaag-------gtcatgctcttcctg--------ttcaaacaggttgttt
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                  7877 71 -     34802 -ttaaagta-gaagtcag-------------------accca----------agttgagccgaatctcaag-------gtcatgctcttcctg--------ttcaaacaggttgttt
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2912630 71 -  11690531 -ttaaagtc-aaattcaa-------------------accca----------agttgagctgaatctcaag-------gtcatgctctttcta--------ttcaagcaggttgttc
i orcOrc1.KB316915             I 179 C 0
s equCab2.chr29                 10872252 71 +  33672925 -ttaaagta-ggattcaa-------------------accca----------aggtgagctgaatccaaag-------gtcatgctcttTCTA--------TTCAGATAGGCTGCTC
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9905314 71 +  34209287 -ttaaagta-gaattcaa-------------------accca----------agttgagctgaatccaaag-------gtcatgctctttcta--------ttcaaataggctgctc
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3118580 70 -   3193751 -ttaaaata-ggg-tcaa-------------------agcca----------ggttgagttggatccccag-------gtcatgcTCTCTCTG--------TTCACAGGGGCACCGC
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                236241 70 -   2104649 -ttaaaata-gga-tcag-------------------ataca----------agttgagctgaattcccag-------gtcatcctctctctg--------ttcaaataggctgctt
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39450291 70 -  55688157 --ttaggta-ggattcaa-------------------accta----------aagtgggctgaatccaagg-------attatgcccttTCTT--------TTTAAATAGGCTGCGG
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 17071 70 +   6345240 -ttaaagta-ggatttaa-------------------accta----------acttgggccaaatccagag-------gttatgctcattc-t--------tttaaataggctgccc
i triMan1.JH594766             C 0 C 0
s monDom5.chr8                 137893005 89 - 312544902 -ATGAAAAG-CTACTCAATTAAGTTGGTTCTTATACTTCCTA----------TGCCAATAGGCAGCAAAAG-------CGTCTTCTCTCTCTGCTTTCC--CCCCAGCTA-------
i monDom5.chr8                 I 11 C 0
s sarHar1.chr5_GL861647_random    318329 82 -   4230514 -GTCAGAAA-CTGAGCAA----------------AGTTTCCA----------TGCCAAtctgtaataaaatataaatctacctgctgtatttatttttcagtccTGATAG-------
i sarHar1.chr5_GL861647_random I 13 C 0
s tetNig2.chr13                  4299420 67 -  13302670 AACATGATA-TCAATCAA-------------------CTTGACAAAGAAAACAGGTGAGCAGAGTGCAAAC------------------------------CCCAGACAGGACGTTT
i tetNig2.chr13                C 0 C 0
e ornAna1.Ultra479               3864917 5904 -   6008416 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE121866                209731  0 +    220559 I
e fr3.chr10                      9064512  0 +   9126174 I
e ficAlb2.chr4A                 19371809  0 +  21182716 I
e anoCar2.chrUn_GL344195           39255 4204 +     59083 I
e pseHum1.KB221209              10759694 18 +  11841479 I
e zonAlb1.KB913045              12575724 5731 +  16390125 I
e colLiv1.KB375822               2439586 31 +   2691611 I
e allMis1.JH737798                 78787 358 +    106177 I
e falPer1.KB391026               1266701 11 +   1688145 I
e falChe1.KB397934               1269954 11 -   4640569 I
e macEug2.GL124958                 26121  0 -     59456 I
e galGal4.chrUn_AADN03023623        2011  0 -      5081 I
e geoFor1.JH740049                182930  0 -   1550430 I
e melGal1.chr1                  24924577 4226 + 204065131 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.KB277496                  6803 35 -     10329 I
e apaSpi1.KB929104                 22324  0 +    818693 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK088237v1       1206822  0 +  22294289 I
e pelSin1.JH211051                 23303  0 +    476004 I
e melUnd1.JH556589               7674127 5368 -   7952740 I
e taeGut2.chr28                  3062068  0 +   4963201 I

a score=104932.000000
s hg38.chr8_KI270814v1_alt        122397 16 +    141812 --TTTCAT---TGATGCAGTG
s panTro4.chr8                  55024882 16 + 143986469 --TTTCAT---TGATGCAGTG
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59165469 16 + 153482349 --TTTCAC---TGATGCGGTG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81381082 16 - 104879549 --ttTCAT---TAATGTAGTG
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61692425 16 + 150158102 --TTTCAT---TGATGTAGTG
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366258 16 + 146850525 --TTTCAT---TGATGTAGTG
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53286795 16 + 139301422 --TTTCAT---TGATGTAGTG
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33707476 16 + 155834243 --TTTCAT---TAATGTAGTG
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4062545 11 +   9144518 --ttT--------ATGTAGTG
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1562085 13 -   1847653 --TCTCA------ATGTAGTG
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1179374 16 -   7152218 --ttccgT---TAATGTGCTG
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                  7948 16 -     34802 --ttccgT---TAATGTGCTG
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2912701 16 -  11690531 --ttTCAT---TAATGTGGAG
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10872323 16 +  33672925 --TGCCAT---TAATGTGGTG
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9905385 16 +  34209287 --TGACAT---TAATATGGTG
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3118650 16 -   3193751 --TGTCAT---TAATGAGGTG
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                236311 13 -   2104649 --ctTCAT---TAACAAG---
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39450361 16 -  55688157 --TTTCAT---TAATGTAGTG
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 17141 16 +   6345240 --ttTAAT---TAATGTTGTG
i triMan1.JH594766             C 0 C 0
s monDom5.chr8                 137893094 16 - 312544902 --TTTCAT---CTATCATATG
i monDom5.chr8                 C 0 I 1
s sarHar1.chr5_GL861647_random    318411 16 -   4230514 --TTTTGT---TCATTAAATC
i sarHar1.chr5_GL861647_random C 0 I 3
s allMis1.JH737798                 79145 16 +    106177 --TTTTAT---ATATTTAGCT
i allMis1.JH737798             I 358 C 0
s tetNig2.chr13                  4299487 19 -  13302670 GTTACCATATCTGATGTTG--
i tetNig2.chr13                C 0 C 0
e ornAna1.Ultra479               3864917 5904 -   6008416 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE121866                209731  0 +    220559 I
e fr3.chr10                      9064512  0 +   9126174 I
e ficAlb2.chr4A                 19371809  0 +  21182716 I
e anoCar2.chrUn_GL344195           39255 4204 +     59083 I
e pseHum1.KB221209              10759694 18 +  11841479 I
e zonAlb1.KB913045              12575724 5731 +  16390125 I
e colLiv1.KB375822               2439586 31 +   2691611 I
e falPer1.KB391026               1266701 11 +   1688145 I
e falChe1.KB397934               1269954 11 -   4640569 I
e macEug2.GL124958                 26121  0 -     59456 I
e galGal4.chrUn_AADN03023623        2011  0 -      5081 I
e geoFor1.JH740049                182930  0 -   1550430 I
e melGal1.chr1                  24924577 4226 + 204065131 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.KB277496                  6803 35 -     10329 I
e apaSpi1.KB929104                 22324  0 +    818693 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK088237v1       1206822  0 +  22294289 I
e pelSin1.JH211051                 23303  0 +    476004 I
e melUnd1.JH556589               7674127 5368 -   7952740 I
e taeGut2.chr28                  3062068  0 +   4963201 I

a score=161091.000000
s hg38.chr8_KI270814v1_alt        122413 19 +    141812 AATAATAAGAGCTAATAAA
s panTro4.chr8                  55024898 19 + 143986469 AATAATAAGAGCTAATAAA
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59165485 19 + 153482349 AATAATAAGAGCTAATAAA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81381098 19 - 104879549 AGTAATGAGGGCGAATGAA
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61692441 19 + 150158102 AATAATAAGAGCTAATAAA
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366274 19 + 146850525 AATAATAAGAGCTAATAAA
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53286811 19 + 139301422 AATAATAAGAGCTAATAAA
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33707492 19 + 155834243 AGGAATAAGAGCAAATGGA
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4062556 19 +   9144518 AGCAATAATAGGGAGTAAA
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1562098 19 -   1847653 AGCTGTAAGAGCTAATAAA
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1179390 12 -   7152218 AGTAAC-------AATAAA
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                  7964  8 -     34802 AGTAAC-----------AA
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2912717 19 -  11690531 AGTAAGAAGAGCTAATATA
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10872339 19 +  33672925 AGTAATAAGAGCTAATAAA
i equCab2.chr29                C 0 I 333
s cerSim1.JH767738               9905401 19 +  34209287 AGTAATAAGAGCTGATAAA
i cerSim1.JH767738             C 0 I 319
s pteAle1.KB031146               3118666 15 -   3193751 ----ATAGAAGCTAATAAA
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                236324 10 -   2104649 ---------AACTAATAAC
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39450377 19 -  55688157 AGTAATTAGAGCTAACAAA
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 17157 19 +   6345240 AGTAATTAGAGCTAACAAA
i triMan1.JH594766             C 0 C 0
s monDom5.chr8                 137893111 19 - 312544902 AACCATAAGAATTAAAGTA
i monDom5.chr8                 I 1 C 0
s sarHar1.chr5_GL861647_random    318430 17 -   4230514 --CAATAAGAGttaatgca
i sarHar1.chr5_GL861647_random I 3 C 0
s macEug2.GL108065                 83237 19 -    187545 AGTAATAAGAGCTAATGCA
i macEug2.GL108065             T 651 C 0
s allMis1.JH737798                 79161 15 +    106177 TGTAAT----GCTTTGAAG
i allMis1.JH737798             C 0 C 0
s tetNig2.chr13                  4299506 18 -  13302670 -GATAAAGGATTTTGTCAA
i tetNig2.chr13                C 0 C 0
e ornAna1.Ultra479               3864917 5904 -   6008416 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE121866                209731  0 +    220559 I
e fr3.chr10                      9064512  0 +   9126174 I
e ficAlb2.chr4A                 19371809  0 +  21182716 I
e anoCar2.chrUn_GL344195           39255 4204 +     59083 I
e pseHum1.KB221209              10759694 18 +  11841479 I
e zonAlb1.KB913045              12575724 5731 +  16390125 I
e colLiv1.KB375822               2439586 31 +   2691611 I
e falPer1.KB391026               1266701 11 +   1688145 I
e falChe1.KB397934               1269954 11 -   4640569 I
e galGal4.chrUn_AADN03023623        2011  0 -      5081 I
e geoFor1.JH740049                182930  0 -   1550430 I
e melGal1.chr1                  24924577 4226 + 204065131 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.KB277496                  6803 35 -     10329 I
e apaSpi1.KB929104                 22324  0 +    818693 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK088237v1       1206822  0 +  22294289 I
e pelSin1.JH211051                 23303  0 +    476004 I
e melUnd1.JH556589               7674127 5368 -   7952740 I
e taeGut2.chr28                  3062068  0 +   4963201 I

a score=35393.000000
s hg38.chr8_KI270814v1_alt        122432  9 +    141812 TATTGTCC-C
s panTro4.chr8                  55024917  9 + 143986469 TATTGTCC-C
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59165504  9 + 153482349 TATTGTCC-C
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81381117  9 - 104879549 TGTTGTAC-T
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61692460  9 + 150158102 TATTGTTT-C
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366293  9 + 146850525 TATTGTTT-C
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53286830  9 + 139301422 TATTGTTT-C
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33707511  9 + 155834243 AGTGGTAT-T
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4062575  9 +   9144518 AAGTATCA-T
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1562117  9 -   1847653 TAATGTAT-A
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1179402  9 -   7152218 TATTGTTC-T
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                  7972  9 -     34802 TATTGTTC-T
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2912736  9 -  11690531 TATTGTTC-T
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10872691  9 +  33672925 TATTGTAT-T
i equCab2.chr29                I 333 C 0
s cerSim1.JH767738               9905739  9 +  34209287 TATTGTAC-T
i cerSim1.JH767738             I 319 C 0
s pteAle1.KB031146               3118681  9 -   3193751 TATTGTAC-T
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                236334  9 -   2104649 TATTGTAC-T
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39450396  9 -  55688157 TGTTTAAC-T
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 17176  9 +   6345240 TATTTAAC-T
i triMan1.JH594766             C 0 C 0
s monDom5.chr8                 137893130 10 - 312544902 CATTTTTTAT
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    318447 10 -   4230514 tattttatat
i sarHar1.chr5_GL861647_random C 0 C 0
s macEug2.GL108065                 83256 10 -    187545 CATTGTAGAT
i macEug2.GL108065             C 0 C 0
s allMis1.JH737798                 79176  9 +    106177 TATGGAAG-T
i allMis1.JH737798             C 0 C 0
s tetNig2.chr13                  4299524  9 -  13302670 CACTCACC-A
i tetNig2.chr13                C 0 C 0
e ornAna1.Ultra479               3864917 5904 -   6008416 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE121866                209731  0 +    220559 I
e fr3.chr10                      9064512  0 +   9126174 I
e ficAlb2.chr4A                 19371809  0 +  21182716 I
e anoCar2.chrUn_GL344195           39255 4204 +     59083 I
e pseHum1.KB221209              10759694 18 +  11841479 I
e zonAlb1.KB913045              12575724 5731 +  16390125 I
e colLiv1.KB375822               2439586 31 +   2691611 I
e falPer1.KB391026               1266701 11 +   1688145 I
e falChe1.KB397934               1269954 11 -   4640569 I
e galGal4.chrUn_AADN03023623        2011  0 -      5081 I
e geoFor1.JH740049                182930  0 -   1550430 I
e melGal1.chr1                  24924577 4226 + 204065131 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.KB277496                  6803 35 -     10329 I
e apaSpi1.KB929104                 22324  0 +    818693 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK088237v1       1206822  0 +  22294289 I
e pelSin1.JH211051                 23303  0 +    476004 I
e melUnd1.JH556589               7674127 5368 -   7952740 I
e taeGut2.chr28                  3062068  0 +   4963201 I

a score=13337.000000
s hg38.chr8_KI270814v1_alt        122441 1 +    141812 T
s panTro4.chr8                  55024926 1 + 143986469 T
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59165513 1 + 153482349 T
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81381126 1 - 104879549 T
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61692469 1 + 150158102 T
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366302 1 + 146850525 T
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53286839 1 + 139301422 T
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33707520 1 + 155834243 T
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4062584 1 +   9144518 T
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1562126 1 -   1847653 T
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1179411 1 -   7152218 T
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                  7981 1 -     34802 T
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2912745 1 -  11690531 T
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10872700 1 +  33672925 T
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9905748 1 +  34209287 G
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3118690 1 -   3193751 T
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                236343 1 -   2104649 G
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39450405 1 -  55688157 T
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 17185 1 +   6345240 T
i triMan1.JH594766             C 0 C 0
s monDom5.chr8                 137893140 1 - 312544902 T
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    318457 1 -   4230514 t
i sarHar1.chr5_GL861647_random C 0 C 0
s macEug2.GL108065                 83266 1 -    187545 T
i macEug2.GL108065             C 0 C 0
s ficAlb2.chr1A                 24320587 1 +  74947036 T
i ficAlb2.chr1A                T 738 C 0
s allMis1.JH737798                 79185 1 +    106177 A
i allMis1.JH737798             C 0 C 0
s tetNig2.chr13                  4299533 1 -  13302670 T
i tetNig2.chr13                C 0 C 0
e ornAna1.Ultra479               3864917 5904 -   6008416 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE121866                209731 0 +    220559 I
e fr3.chr10                      9064512 0 +   9126174 I
e anoCar2.chrUn_GL344195           39255 4204 +     59083 I
e pseHum1.KB221209              10759694 18 +  11841479 I
e zonAlb1.KB913045              12575724 5731 +  16390125 I
e colLiv1.KB375822               2439586 31 +   2691611 I
e falPer1.KB391026               1266701 11 +   1688145 I
e falChe1.KB397934               1269954 11 -   4640569 I
e galGal4.chrUn_AADN03023623        2011 0 -      5081 I
e geoFor1.JH740049                182930 0 -   1550430 I
e melGal1.chr1                  24924577 4226 + 204065131 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.KB277496                  6803 35 -     10329 I
e apaSpi1.KB929104                 22324 0 +    818693 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK088237v1       1206822 0 +  22294289 I
e pelSin1.JH211051                 23303 0 +    476004 I
e melUnd1.JH556589               7674127 5368 -   7952740 I
e taeGut2.chr28                  3062068 0 +   4963201 I

a score=-76633.000000
s hg38.chr8_KI270814v1_alt        122442 18 +    141812 T-TTCAGGAGG---AAAT-------T---AAT
s panTro4.chr8                  55024927 18 + 143986469 T-TTCAGGAGG---AAAT-------T---AAT
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59165514 18 + 153482349 T-TTCAGAAGG---AAAT-------T---AAT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81381127 20 - 104879549 TCTTCAGGAGA---ATAT-------TA--AAT
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61692470 19 + 150158102 T-TTCAGGGGG---AAAT-------TA--AAT
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366303 19 + 146850525 T-TTCAGGGGG---AAAT-------TA--AAT
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53286840 19 + 139301422 T-TTCAGGGGG---AAAT-------TA--AAT
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33707521 20 + 155834243 TCTTCAGCAGA---ACAT-------TG--AAT
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4062585 19 +   9144518 GCCTCA-CAAA---AAAT-------TA--AAT
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1562127 16 -   1847653 TCTTCACAAGA---AAAT-------T------
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1179412 15 -   7152218 TCTCCATAAG----A-----------A--AAT
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                  7982 16 -     34802 TCTCCATAAGA---A-----------A--AAT
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2912746 20 -  11690531 TCTCCAGAAGA---AAAC-------TA--AAT
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10872701 20 +  33672925 TCTCCGGAAGA---AAAC-------TA--AAT
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9905749 20 +  34209287 TCTCCAGAAGA---AAAC-------TA--AAT
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3118691 20 -   3193751 TATTCAGAAGA---AAAC-------TA--AAT
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                236344 24 -   2104649 TCTCCAGAAGA---AAAT---TAAATA--AAT
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39450406 20 -  55688157 CCTATGGGAGA---AAAT-------CA--AGC
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 17186 20 +   6345240 TATTCAGAAGA---AAAT-------CA--AGT
i triMan1.JH594766             C 0 C 0
s monDom5.chr8                 137893141 28 - 312544902 TCTTGAGGTGA---CAAT-AGTGACCATGTAC
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    318458 26 -   4230514 tctttaggtAA---CAGT-AGTAGCCA--CAT
i sarHar1.chr5_GL861647_random C 0 C 0
s macEug2.GL108065                 83267 28 -    187545 TCTTCAAGTGA---AAAT-AGTGGCTATTTAT
i macEug2.GL108065             C 0 C 0
s ficAlb2.chr1A                 24320588 18 +  74947036 -TTTTGGTAGC---AAGT-------CC--CA-
i ficAlb2.chr1A                C 0 C 0
s allMis1.JH737798                 79186 15 +    106177 -TTTCCATAG------GT-------CA--TA-
i allMis1.JH737798             C 0 C 0
s anoCar2.chrUn_GL344195           43459 25 +     59083 -TCTCAGGATA---AAATTGGAGAACC--CA-
i anoCar2.chrUn_GL344195       I 4204 C 0
s tetNig2.chr13                  4299534 21 -  13302670 -AGTCAGTAAACACAAAT-------CA--AT-
i tetNig2.chr13                C 0 C 0
e ornAna1.Ultra479               3864917 5904 -   6008416 I
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE121866                209731  0 +    220559 I
e fr3.chr10                      9064512  0 +   9126174 I
e pseHum1.KB221209              10759694 18 +  11841479 I
e zonAlb1.KB913045              12575724 5731 +  16390125 I
e colLiv1.KB375822               2439586 31 +   2691611 I
e falPer1.KB391026               1266701 11 +   1688145 I
e falChe1.KB397934               1269954 11 -   4640569 I
e galGal4.chrUn_AADN03023623        2011  0 -      5081 I
e geoFor1.JH740049                182930  0 -   1550430 I
e melGal1.chr1                  24924577 4226 + 204065131 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e amaVit1.KB277496                  6803 35 -     10329 I
e apaSpi1.KB929104                 22324  0 +    818693 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK088237v1       1206822  0 +  22294289 I
e pelSin1.JH211051                 23303  0 +    476004 I
e melUnd1.JH556589               7674127 5368 -   7952740 I
e taeGut2.chr28                  3062068  0 +   4963201 I

a score=31941.000000
s hg38.chr8_KI270814v1_alt        122460 1 +    141812 A
s panTro4.chr8                  55024945 1 + 143986469 A
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59165532 1 + 153482349 A
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81381147 1 - 104879549 A
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61692489 1 + 150158102 A
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366322 1 + 146850525 A
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53286859 1 + 139301422 A
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33707541 1 + 155834243 A
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4062604 1 +   9144518 A
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1562143 1 -   1847653 A
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1179427 1 -   7152218 A
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                  7998 1 -     34802 A
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2912766 1 -  11690531 A
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10872721 1 +  33672925 A
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9905769 1 +  34209287 A
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3118711 1 -   3193751 A
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                236368 1 -   2104649 A
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39450426 1 -  55688157 A
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 17206 1 +   6345240 A
i triMan1.JH594766             C 0 C 0
s monDom5.chr8                 137893169 1 - 312544902 A
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    318484 1 -   4230514 A
i sarHar1.chr5_GL861647_random C 0 C 0
s macEug2.GL108065                 83295 1 -    187545 A
i macEug2.GL108065             C 0 C 0
s ornAna1.Ultra479               3870821 1 -   6008416 A
i ornAna1.Ultra479             I 5904 C 0
s ficAlb2.chr1A                 24320606 1 +  74947036 A
i ficAlb2.chr1A                C 0 I 3
s allMis1.JH737798                 79201 1 +    106177 A
i allMis1.JH737798             C 0 I 4
s anoCar2.chrUn_GL344195           43484 1 +     59083 A
i anoCar2.chrUn_GL344195       C 0 I 1
s tetNig2.chr13                  4299555 1 -  13302670 A
i tetNig2.chr13                C 0 C 0
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE121866                209731 0 +    220559 I
e fr3.chr10                      9064512 0 +   9126174 I
e pseHum1.KB221209              10759694 18 +  11841479 I
e zonAlb1.KB913045              12575724 5731 +  16390125 I
e colLiv1.KB375822               2439586 31 +   2691611 I
e falPer1.KB391026               1266701 11 +   1688145 I
e falChe1.KB397934               1269954 11 -   4640569 I
e galGal4.chrUn_AADN03023623        2011 0 -      5081 I
e geoFor1.JH740049                182930 0 -   1550430 I
e melGal1.chr1                  24924577 4226 + 204065131 I
e anaPla1.KB742696               1254472 0 -   1270250 I
e amaVit1.KB277496                  6803 35 -     10329 I
e apaSpi1.KB929104                 22324 0 +    818693 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK088237v1       1206822 0 +  22294289 I
e pelSin1.JH211051                 23303 0 +    476004 I
e melUnd1.JH556589               7674127 5368 -   7952740 I
e taeGut2.chr28                  3062068 0 +   4963201 I

a score=117061.000000
s hg38.chr8_KI270814v1_alt        122461 17 +    141812 TTTGTTTTGA----------------AAGCAGA--
s panTro4.chr8                  55024946 17 + 143986469 TTTGTTTTGA----------------AAGCAGA--
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59165533 17 + 153482349 TTTGTTTTGA----------------AAGCAGA--
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81381148 17 - 104879549 TTTGTTTTGA----------------AGGCAGA--
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61692490 17 + 150158102 TTTGTTTTGA----------------AGGCAGA--
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366323 17 + 146850525 TTTGTTTTGA----------------AGGCAGA--
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53286860 17 + 139301422 TTTGTTTTGA----------------AGGCAGA--
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33707542 17 + 155834243 TTTGTTTTGA----------------AGGCAGA--
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4062605 17 +   9144518 TTTGTTTGGA----------------AGGTAGA--
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1562144 11 -   1847653 TTTCTTTTGA----------------A--------
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1179428 17 -   7152218 TTTGTTTTAA----------------AGGGGTA--
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                  7999 17 -     34802 TTTGTTTTAA----------------AGGGGTA--
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2912767 17 -  11690531 TTTGTTTTAA----------------AGGGATA--
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10872722 17 +  33672925 TTTGTTTTAA----------------AGGCTTT--
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9905770 17 +  34209287 TTTGTTTTGA----------------AGGGATT--
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3118712 17 -   3193751 TTTGTTTTGA----------------AGGCATA--
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                236369 17 -   2104649 TTTGTTTTAA----------------AGGCATA--
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39450427 17 -  55688157 CTTGTTCTGA----------------AGTTACA--
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 17207 17 +   6345240 CTTATTTTGA----------------AGTTATA--
i triMan1.JH594766             C 0 C 0
s monDom5.chr8                 137893170 32 - 312544902 AGTATCTTGGCAGTGATTTATAGTTCAGGTAT---
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    318485 33 -   4230514 TTTATTTTGGCAATGATTTATAGTTTAGCTATA--
i sarHar1.chr5_GL861647_random C 0 C 0
s macEug2.GL108065                 83296 33 -    187545 TTTATTTAGGCAGTGATTTAGAGTTTAGGCATA--
i macEug2.GL108065             C 0 C 0
s ornAna1.Ultra479               3870822 17 -   6008416 TCTGGGCTGT----------------GGGCCGA--
i ornAna1.Ultra479             C 0 C 0
s ficAlb2.chr1A                 24320610 14 +  74947036 TTTGGTGTG-----------------CAGCT----
i ficAlb2.chr1A                I 3 C 0
s amaVit1.KB277496                  6838 17 -     10329 tttgttctgc----------------caGCTGA--
i amaVit1.KB277496             I 35 C 0
s allMis1.JH737798                 79206 16 +    106177 TTTCCTTTA-----------------AGGTTGA--
i allMis1.JH737798             I 4 C 0
s anoCar2.chrUn_GL344195           43486 17 +     59083 TTTGTCCTGA----------------CAGAGAA--
i anoCar2.chrUn_GL344195       I 1 C 0
s tetNig2.chr13                  4299556 19 -  13302670 TTGGCtgtta----------------aaagacaaa
i tetNig2.chr13                C 0 C 0
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE121866                209731  0 +    220559 I
e fr3.chr10                      9064512  0 +   9126174 I
e pseHum1.KB221209              10759694 18 +  11841479 I
e zonAlb1.KB913045              12575724 5731 +  16390125 I
e colLiv1.KB375822               2439586 31 +   2691611 I
e falPer1.KB391026               1266701 11 +   1688145 I
e falChe1.KB397934               1269954 11 -   4640569 I
e galGal4.chrUn_AADN03023623        2011  0 -      5081 I
e geoFor1.JH740049                182930  0 -   1550430 I
e melGal1.chr1                  24924577 4226 + 204065131 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e apaSpi1.KB929104                 22324  0 +    818693 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK088237v1       1206822  0 +  22294289 I
e pelSin1.JH211051                 23303  0 +    476004 I
e melUnd1.JH556589               7674127 5368 -   7952740 I
e taeGut2.chr28                  3062068  0 +   4963201 I

a score=30171.000000
s hg38.chr8_KI270814v1_alt        122478 35 +    141812 GGAATAGCATGCTATTTATT---------------GTTTG---------CAATTACG----TG
s panTro4.chr8                  55024963 35 + 143986469 GGAATAGCATGCTATTTGTT---------------GTTTG---------CAATTACG----TG
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59165550 35 + 153482349 GGAATAGCATGCTATTTATT---------------GTTTG---------CAGTTACA----TG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81381165 35 - 104879549 GAAAGAGCATGGTATTTAAT---------------GTTGA---------CAATTACT----TA
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61692507 35 + 150158102 GGAATAGCATGCTATTTATT---------------GTTTG---------CAATTACA----TG
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366340 35 + 146850525 GGAATAGCATGCTATTTATT---------------GTTTG---------CAATTACA----TG
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53286877 35 + 139301422 GGAATAGCATGCTATTTATT---------------GTTTG---------CAATTACA----TG
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33707559 35 + 155834243 GAAAGAGCATGATATTTAAT---------------GTTTA---------CAATTATC----TA
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4062622 35 +   9144518 GAAATCACATGCTACTCAAT---------------GTTTA---------TAATTACA----CA
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1562155 34 -   1847653 -TAATAACATTCTATTTAAT---------------GTTTA---------CAACTGCA----TG
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1179445 35 -   7152218 GTAATAGCATGCTGTTGAAT---------------ATTTA---------CAGTTATG----TG
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                  8016 35 -     34802 GTAATAGCATGCTGTTGAAT---------------ATTTA---------CAGTTATG----TG
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2912784 35 -  11690531 GGAATAGCATGCTATTAAAT---------------GTTTT---------CAATTACA----TG
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10872739 34 +  33672925 G-AATAACAGGCTATTTAAT---------------GTTTA---------CAATTACG----TG
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9905787 35 +  34209287 GTAATAACACGCTATTTAAT---------------GTTTA---------CAATTATG----TG
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3118729 30 -   3193751 GGAATAGC-----ATTTAAT---------------GTTTA---------CAATTACA----TG
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                236386 30 -   2104649 GAGATAAC-----ATGTAAT---------------GTCTA---------CAATTACA----TG
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39450444 35 -  55688157 GGAATAACATGCTGTTGAAT---------------GTTCA---------CTATTACA----TG
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 17224 35 +   6345240 GGAATAACATGGGGTTTAAT---------------GTTCG---------CCATTACA----TG
i triMan1.JH594766             C 0 C 0
s monDom5.chr8                 137893202 22 - 312544902 ----------------TTGT---------------GTT-A---------GAAATGACTCAACA
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    318518 35 -   4230514 AGAATAATAAtgcatatttt---------------attaa---------aaattata----ct
i sarHar1.chr5_GL861647_random C 0 C 0
s macEug2.GL108065                 83329 38 -    187545 ATAACAATAATGCATTTTAT---------------GTT-A---------GAACTACAGTACCT
i macEug2.GL108065             C 0 C 0
s ornAna1.Ultra479               3870839 32 -   6008416 AGAGTGATTCGCCTTT---T---------------GTTTT---------AAAATGAG----TT
i ornAna1.Ultra479             C 0 C 0
s falChe1.KB398074               4262787 34 -   7151304 -----GGCATATCAATTTAT-----------CACAGCCTG---------AAATTATC----TC
i falChe1.KB398074             T 600 I 3
s falPer1.KB391107               2215404 34 -   3101084 -----GGCATATCAATTTAT-----------CACAGCCTG---------AAATTATC----TC
i falPer1.KB391107             T 600 I 3
s ficAlb2.chr1A                 24320624 48 +  74947036 ------GCTGGT-----AATGGAGTGGGTTCTTTAGCTTGAGATTTGCAAAGTGAAA----CT
i ficAlb2.chr1A                C 0 I 3
s amaVit1.KB277496                  6855 45 -     10329 -----GGCTTGTTGGCCTATGTGGTGGGTACCGCAGCCTG---------AAACAAGA----CC
i amaVit1.KB277496             C 0 I 3
s allMis1.JH737798                 79222 31 +    106177 ---------------TTTAC----AAAAATCTATAATTTG---------AGCCAAAT----CT
i allMis1.JH737798             C 0 I 7
s anoCar2.chrUn_GL344195           43503 31 +     59083 ------------------------AGAGTCAAATAACACTAAAGA----AAATAATA----TC
i anoCar2.chrUn_GL344195       C 0 C 0
s tetNig2.chr13                  4299575 21 -  13302670 gaaatagTAA------TATT---------------ATTTG---------CA------------
i tetNig2.chr13                C 0 C 0
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE121866                209731  0 +    220559 I
e fr3.chr10                      9064512  0 +   9126174 I
e pseHum1.KB221209              10759694 18 +  11841479 I
e zonAlb1.KB913045              12575724 5731 +  16390125 I
e colLiv1.KB375822               2439586 31 +   2691611 I
e galGal4.chrUn_AADN03023623        2011  0 -      5081 I
e geoFor1.JH740049                182930  0 -   1550430 I
e melGal1.chr1                  24924577 4226 + 204065131 I
e anaPla1.KB742696               1254472  0 -   1270250 I
e apaSpi1.KB929104                 22324  0 +    818693 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK088237v1       1206822  0 +  22294289 I
e pelSin1.JH211051                 23303  0 +    476004 I
e melUnd1.JH556589               7674127 5368 -   7952740 I
e taeGut2.chr28                  3062068  0 +   4963201 I

a score=69792.000000
s hg38.chr8_KI270814v1_alt        122513 8 +    141812 AATCATTG
s panTro4.chr8                  55024998 8 + 143986469 AATCATTG
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59165585 8 + 153482349 AATCATTG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81381200 8 - 104879549 AATCATTA
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61692542 8 + 150158102 AATCATTG
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366375 8 + 146850525 AATCATTG
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53286912 8 + 139301422 AATCATTG
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33707594 8 + 155834243 AATAATTG
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4062657 8 +   9144518 GATGATTT
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1562189 8 -   1847653 AATCATTG
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1179480 8 -   7152218 AGTAATTG
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                  8051 8 -     34802 AGTAATTG
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2912819 8 -  11690531 AACAATTG
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10872773 8 +  33672925 ACTACTTG
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9905822 8 +  34209287 AATACTTG
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3118759 8 -   3193751 AATAATTA
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                236416 8 -   2104649 AGTAATTG
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39450479 8 -  55688157 AATAATTG
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 17259 8 +   6345240 AATAATTG
i triMan1.JH594766             C 0 C 0
s monDom5.chr8                 137893224 8 - 312544902 AACAGTTG
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    318553 8 -   4230514 aaCAATGG
i sarHar1.chr5_GL861647_random C 0 C 0
s macEug2.GL108065                 83367 8 -    187545 GATAATGG
i macEug2.GL108065             C 0 C 0
s ornAna1.Ultra479               3870871 6 -   6008416 AAC--TTG
i ornAna1.Ultra479             C 0 C 0
s falChe1.KB398074               4262824 5 -   7151304 ---AGTTG
i falChe1.KB398074             I 3 C 0
s falPer1.KB391107               2215441 5 -   3101084 ---AGTTG
i falPer1.KB391107             I 3 C 0
s ficAlb2.chr1A                 24320675 5 +  74947036 ---GGTCG
i ficAlb2.chr1A                I 3 C 0
s amaVit1.KB277496                  6903 5 -     10329 ---AGCTG
i amaVit1.KB277496             I 3 C 0
s anaPla1.KB743807                  5416 5 +     81650 ---AATCA
i anaPla1.KB743807             T 614 I 8
s allMis1.JH737798                 79260 4 +    106177 ---ACTG-
i allMis1.JH737798             I 7 I 15
s anoCar2.chrUn_GL344195           43534 3 +     59083 ---AAT--
i anoCar2.chrUn_GL344195       C 0 I 1
e tetNig2.chr13                  4299596 0 -  13302670 C
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE121866                209731 0 +    220559 I
e fr3.chr10                      9064512 0 +   9126174 I
e pseHum1.KB221209              10759694 18 +  11841479 I
e zonAlb1.KB913045              12575724 5731 +  16390125 I
e colLiv1.KB375822               2439586 31 +   2691611 I
e galGal4.chrUn_AADN03023623        2011 0 -      5081 I
e geoFor1.JH740049                182930 0 -   1550430 I
e melGal1.chr1                  24924577 4226 + 204065131 I
e apaSpi1.KB929104                 22324 0 +    818693 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK088237v1       1206822 0 +  22294289 I
e pelSin1.JH211051                 23303 0 +    476004 I
e melUnd1.JH556589               7674127 5368 -   7952740 I
e taeGut2.chr28                  3062068 0 +   4963201 I

a score=-121509.000000
s hg38.chr8_KI270814v1_alt        122521 29 +    141812 TATGTTTTG---------------AGATAGTGGACT--------AAACTTCT
s panTro4.chr8                  55025006 29 + 143986469 TATGTTTTG---------------AGATAGTGGACT--------AAACTTCT
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59165593 29 + 153482349 TATGTTTTG---------------AGATAGTGGACT--------AAACTTCT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81381208 29 - 104879549 TATGTTTTG---------------AGACAGTGGACT--------AAACTTTC
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61692550 29 + 150158102 TATGTTTTG---------------AGATAGTGGACT--------AAACTTCT
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366383 29 + 146850525 TATGTTTTG---------------AGATAGTGGACT--------AAACTCCT
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53286920 29 + 139301422 TATGTTTTG---------------AGATAGTGGACT--------AAACTTCT
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33707602 29 + 155834243 TATGTTTTG---------------AGACAGTGGACT--------AAAATTTC
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4062665 37 +   9144518 TATGTGTTC---------------AGATGATTTTATGTTTTCAGATAGTTTC
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1562197 29 -   1847653 TTTGTTTTG---------------GGATAGTACACT--------ATAGTTTT
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1179488 28 -   7152218 TATG-TTTG---------------AACTAGTACACT--------CTAATTTC
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                  8059 28 -     34802 TATG-TTTG---------------AACTAGTACACT--------CTAATTTC
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2912827 29 -  11690531 TATGTTTTG---------------AAATAGTGCATT--------ACAATTTC
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10872781 29 +  33672925 TATGTTTTG---------------AGATAGTGCACT--------GTAATTTC
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9905830 29 +  34209287 TATGTTTTG---------------AGGTAGTGCACT--------GTAATTTC
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3118767 29 -   3193751 CATGTTTTG---------------AGACAGTGGACT--------CCAATTTC
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                236424 29 -   2104649 TATGTTTTG---------------AGACAGTGCGCT--------CTAAATTC
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39450487 29 -  55688157 TGTATTCTG---------------AGATAGTGTACT--------GTAATTTT
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 17267 29 +   6345240 TATATTCTG---------------AGATAGTGAACT--------GTACTTTT
i triMan1.JH594766             C 0 C 0
s monDom5.chr8                 137893232 29 - 312544902 TATAGTTTG---------------AATAGTTTCACT--------CTATATTA
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    318561 27 -   4230514 tacaatttt---------------gattattata----------gTACATTG
i sarHar1.chr5_GL861647_random C 0 C 0
s macEug2.GL108065                 83375 23 -    187545 TACAATTCT---------------GTTTTTTGTA--------------ATTA
i macEug2.GL108065             C 0 C 0
s ornAna1.Ultra479               3870877 27 -   6008416 TTTGATTTC---------------GGTTCCCTTA----------ACATGCTG
i ornAna1.Ultra479             C 0 C 0
s colLiv1.KB375358               1019031 12 +   1462937 TCTGCCTGT---------------gct-------------------------
i colLiv1.KB375358             T 687 I 3
s falChe1.KB398074               4262829 12 -   7151304 TCTGTTTGT---------------GCT-------------------------
i falChe1.KB398074             C 0 I 2
s falPer1.KB391107               2215446 12 -   3101084 TCTGTTTGT---------------GCT-------------------------
i falPer1.KB391107             C 0 I 2
s ficAlb2.chr1A                 24320680 27 +  74947036 TATGTTTAtcaaaaaaaacctgaaatt-------------------------
i ficAlb2.chr1A                C 0 I 2
s amaVit1.KB277496                  6908 12 -     10329 TCTGCCTGT---------------GTT-------------------------
i amaVit1.KB277496             C 0 C 0
s anaPla1.KB743807                  5429 12 +     81650 TCTGTCAGT---------------GTG-------------------------
i anaPla1.KB743807             I 8 I 12
s allMis1.JH737798                 79279 12 +    106177 TATGCTTTC---------------TTT-------------------------
i allMis1.JH737798             I 15 I 4
s anoCar2.chrUn_GL344195           43538 12 +     59083 TTATTCTGT---------------GAT-------------------------
i anoCar2.chrUn_GL344195       I 1 I 15
s tetNig2.chr13                  4299596 18 -  13302670 --------------------------TTAATACact--------gaaaacat
i tetNig2.chr13                C 0 C 0
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382  0 -   6649201 I
e hapBur1.JH425491                252157  0 -   1273513 I
e neoBri1.JH422308               3491820  0 -   5414369 I
e araMac1.AOUJ01470298               637  0 -       895 I
e takFla1.KE121866                209731  0 +    220559 I
e fr3.chr10                      9064512  0 +   9126174 I
e pseHum1.KB221209              10759694 18 +  11841479 I
e zonAlb1.KB913045              12575724 5731 +  16390125 I
e galGal4.chrUn_AADN03023623        2011  0 -      5081 I
e geoFor1.JH740049                182930  0 -   1550430 I
e melGal1.chr1                  24924577 4226 + 204065131 I
e apaSpi1.KB929104                 22324  0 +    818693 I
e cheMyd1.KB605988                134509  0 +    155857 I
e chrPic2.chrUn_KK088237v1       1206822  0 +  22294289 I
e pelSin1.JH211051                 23303  0 +    476004 I
e melUnd1.JH556589               7674127 5368 -   7952740 I
e taeGut2.chr28                  3062068  0 +   4963201 I

a score=29401.000000
s hg38.chr8_KI270814v1_alt        122550 5 +    141812 CT-CAA
s panTro4.chr8                  55025035 5 + 143986469 CT-CAA
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59165622 5 + 153482349 GT-CAA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81381237 6 - 104879549 CTAAAA
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61692579 5 + 150158102 CT-CAG
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366412 5 + 146850525 CT-CAG
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53286949 5 + 139301422 CT-CAG
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33707631 5 + 155834243 CT-AAA
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4062702 5 +   9144518 CT-AAA
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1562226 5 -   1847653 CT-AAA
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1179516 5 -   7152218 CT-AAA
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                  8087 5 -     34802 CT-AAA
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2912856 5 -  11690531 CT-AAA
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10872810 5 +  33672925 CT-GAA
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9905859 5 +  34209287 AT-ATA
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3118796 5 -   3193751 CT-AAA
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                236453 5 -   2104649 CT-AAG
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39450516 5 -  55688157 CT-AAA
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 17296 5 +   6345240 CT-AAA
i triMan1.JH594766             C 0 C 0
s monDom5.chr8                 137893261 5 - 312544902 TT-AAA
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    318588 5 -   4230514 TC-AAA
i sarHar1.chr5_GL861647_random C 0 C 0
s macEug2.GL108065                 83398 5 -    187545 TC-AAG
i macEug2.GL108065             C 0 C 0
s ornAna1.Ultra479               3870904 5 -   6008416 TC-TAA
i ornAna1.Ultra479             C 0 C 0
s colLiv1.KB375358               1019046 4 +   1462937 -t-taa
i colLiv1.KB375358             I 3 C 0
s falChe1.KB398074               4262843 5 -   7151304 Tt-taa
i falChe1.KB398074             I 2 C 0
s falPer1.KB391107               2215460 5 -   3101084 Tt-taa
i falPer1.KB391107             I 2 C 0
s ficAlb2.chr1A                 24320709 5 +  74947036 cC-CTG
i ficAlb2.chr1A                I 2 C 0
s pseHum1.KB221193               9788829 5 +  32995986 ct-caa
i pseHum1.KB221193             T 578 C 0
s amaVit1.KB277496                  6920 2 -     10329 ----AA
i amaVit1.KB277496             C 0 C 0
s anaPla1.KB743807                  5453 2 +     81650 ct----
i anaPla1.KB743807             I 12 C 0
s allMis1.JH737798                 79295 5 +    106177 TT-TAA
i allMis1.JH737798             I 4 C 0
s anoCar2.chrUn_GL344195           43565 5 +     59083 TT-GCA
i anoCar2.chrUn_GL344195       I 15 C 0
e tetNig2.chr13                  4299614 0 -  13302670 C
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE121866                209731 0 +    220559 I
e fr3.chr10                      9064512 0 +   9126174 I
e zonAlb1.KB913045              12575724 5731 +  16390125 I
e galGal4.chrUn_AADN03023623        2011 0 -      5081 I
e geoFor1.JH740049                182930 0 -   1550430 I
e melGal1.chr1                  24924577 4226 + 204065131 I
e apaSpi1.KB929104                 22324 0 +    818693 I
e cheMyd1.KB605988                134509 0 +    155857 I
e chrPic2.chrUn_KK088237v1       1206822 0 +  22294289 I
e pelSin1.JH211051                 23303 0 +    476004 I
e melUnd1.JH556589               7674127 5368 -   7952740 I
e taeGut2.chr28                  3062068 0 +   4963201 I

a score=-16980.000000
s hg38.chr8_KI270814v1_alt        122555 1 +    141812 T
s panTro4.chr8                  55025040 1 + 143986469 T
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59165627 1 + 153482349 C
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81381243 1 - 104879549 A
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61692584 1 + 150158102 T
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366417 1 + 146850525 T
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53286954 1 + 139301422 T
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33707636 1 + 155834243 A
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4062707 1 +   9144518 A
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1562231 1 -   1847653 A
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1179521 1 -   7152218 A
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                  8092 1 -     34802 A
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2912861 1 -  11690531 A
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10872815 1 +  33672925 A
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9905864 1 +  34209287 A
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3118801 1 -   3193751 A
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                236458 1 -   2104649 G
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39450521 1 -  55688157 A
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 17301 1 +   6345240 A
i triMan1.JH594766             C 0 C 0
s monDom5.chr8                 137893266 1 - 312544902 C
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    318593 1 -   4230514 T
i sarHar1.chr5_GL861647_random C 0 C 0
s macEug2.GL108065                 83403 1 -    187545 C
i macEug2.GL108065             C 0 C 0
s ornAna1.Ultra479               3870909 1 -   6008416 C
i ornAna1.Ultra479             C 0 C 0
s colLiv1.KB375358               1019050 1 +   1462937 t
i colLiv1.KB375358             C 0 I 1
s falChe1.KB398074               4262848 1 -   7151304 t
i falChe1.KB398074             C 0 I 1
s falPer1.KB391107               2215465 1 -   3101084 t
i falPer1.KB391107             C 0 I 1
s ficAlb2.chr1A                 24320714 1 +  74947036 T
i ficAlb2.chr1A                C 0 C 0
s pseHum1.KB221193               9788834 1 +  32995986 t
i pseHum1.KB221193             C 0 C 0
s amaVit1.KB277496                  6922 1 -     10329 C
i amaVit1.KB277496             C 0 I 4
s allMis1.JH737798                 79300 1 +    106177 T
i allMis1.JH737798             C 0 I 8
s cheMyd1.KB478633               2433113 1 +   6037886 T
i cheMyd1.KB478633             T 723 I 1
s anoCar2.chrUn_GL344195           43570 1 +     59083 T
i anoCar2.chrUn_GL344195       C 0 C 0
e tetNig2.chr13                  4299614 0 -  13302670 C
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE121866                209731 0 +    220559 I
e fr3.chr10                      9064512 0 +   9126174 I
e zonAlb1.KB913045              12575724 5731 +  16390125 I
e galGal4.chrUn_AADN03023623        2011 0 -      5081 I
e geoFor1.JH740049                182930 0 -   1550430 I
e melGal1.chr1                  24924577 4226 + 204065131 I
e anaPla1.KB743807                  5455 0 +     81650 C
e apaSpi1.KB929104                 22324 0 +    818693 I
e chrPic2.chrUn_KK088237v1       1206822 0 +  22294289 I
e pelSin1.JH211051                 23303 0 +    476004 I
e melUnd1.JH556589               7674127 5368 -   7952740 I
e taeGut2.chr28                  3062068 0 +   4963201 I

a score=-363.000000
s hg38.chr8_KI270814v1_alt        122556 1 +    141812 A
s panTro4.chr8                  55025041 1 + 143986469 G
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59165628 1 + 153482349 G
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81381244 1 - 104879549 G
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61692585 1 + 150158102 A
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366418 1 + 146850525 A
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53286955 1 + 139301422 A
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33707637 1 + 155834243 G
i calJac3.chr7                 C 0 I 1
s saiBol1.JH378196               4062708 1 +   9144518 A
i saiBol1.JH378196             C 0 I 2
s otoGar3.GL873762               1562232 1 -   1847653 A
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1179522 1 -   7152218 A
i vicPac2.KB632521             C 0 I 1
s camFer1.KB018161                  8093 1 -     34802 A
i camFer1.KB018161             C 0 I 1
s orcOrc1.KB316915               2912862 1 -  11690531 A
i orcOrc1.KB316915             C 0 I 1
s equCab2.chr29                 10872816 1 +  33672925 A
i equCab2.chr29                C 0 I 1
s cerSim1.JH767738               9905865 1 +  34209287 A
i cerSim1.JH767738             C 0 I 1
s pteAle1.KB031146               3118802 1 -   3193751 T
i pteAle1.KB031146             C 0 I 1
s myoLuc2.GL429990                236459 1 -   2104649 A
i myoLuc2.GL429990             C 0 I 1
s loxAfr3.scaffold_15           39450522 1 -  55688157 T
i loxAfr3.scaffold_15          C 0 I 1
s triMan1.JH594766                 17302 1 +   6345240 T
i triMan1.JH594766             C 0 I 1
s monDom5.chr8                 137893267 1 - 312544902 A
i monDom5.chr8                 C 0 I 9
s sarHar1.chr5_GL861647_random    318594 1 -   4230514 A
i sarHar1.chr5_GL861647_random C 0 I 9
s macEug2.GL108065                 83404 1 -    187545 A
i macEug2.GL108065             C 0 I 9
s ornAna1.Ultra479               3870910 1 -   6008416 T
i ornAna1.Ultra479             C 0 C 0
e tetNig2.chr13                  4299614 0 -  13302670 C
e punNye1.JH419232               4767720 338 +   5065651 T
e mayZeb1.JH720522                609382 0 -   6649201 I
e hapBur1.JH425491                252157 0 -   1273513 I
e neoBri1.JH422308               3491820 0 -   5414369 I
e araMac1.AOUJ01470298               637 0 -       895 I
e takFla1.KE121866                209731 0 +    220559 I
e fr3.chr10                      9064512 0 +   9126174 I
e ficAlb2.chr1A                 24320715 0 +  74947036 C
e anoCar2.chrUn_GL344195           43571 0 +     59083 C
e pseHum1.KB221193               9788835 0 +  32995986 C
e zonAlb1.KB913045              12575724 5731 +  16390125 I
e colLiv1.KB375358               1019051 1 +   1462937 I
e allMis1.JH737798                 79301 8 +    106177 I
e falPer1.KB391107               2215466 1 -   3101084 I
e falChe1.KB398074               4262849 1 -   7151304 I
e galGal4.chrUn_AADN03023623        2011 0 -      5081 I
e geoFor1.JH740049                182930 0 -   1550430 I
e melGal1.chr1                  24924577 4226 + 204065131 I
e anaPla1.KB743807                  5455 0 +     81650 C
e amaVit1.KB277496                  6923 4 -     10329 I
e apaSpi1.KB929104                 22324 0 +    818693 I
e cheMyd1.KB478633               2433114 1 +   6037886 I
e chrPic2.chrUn_KK088237v1       1206822 0 +  22294289 I
e pelSin1.JH211051                 23303 0 +    476004 I
e melUnd1.JH556589               7674127 5368 -   7952740 I
e taeGut2.chr28                  3062068 0 +   4963201 I

a score=34769.000000
s hg38.chr8_KI270814v1_alt        122557 2 +    141812 TC
s panTro4.chr8                  55025042 2 + 143986469 TC
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59165629 2 + 153482349 TC
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81381245 2 - 104879549 TC
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61692586 2 + 150158102 TC
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366419 2 + 146850525 TC
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53286956 2 + 139301422 TC
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33707639 2 + 155834243 TT
i calJac3.chr7                 I 1 C 0
s saiBol1.JH378196               4062711 2 +   9144518 TT
i saiBol1.JH378196             I 2 C 0
s otoGar3.GL873762               1562233 2 -   1847653 TT
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1179524 2 -   7152218 TC
i vicPac2.KB632521             I 1 C 0
s camFer1.KB018161                  8095 2 -     34802 TC
i camFer1.KB018161             I 1 C 0
s orcOrc1.KB316915               2912864 2 -  11690531 TC
i orcOrc1.KB316915             I 1 C 0
s equCab2.chr29                 10872818 2 +  33672925 TC
i equCab2.chr29                I 1 C 0
s cerSim1.JH767738               9905867 2 +  34209287 TC
i cerSim1.JH767738             I 1 C 0
s pteAle1.KB031146               3118804 2 -   3193751 TA
i pteAle1.KB031146             I 1 C 0
s myoLuc2.GL429990                236461 2 -   2104649 TC
i myoLuc2.GL429990             I 1 C 0
s loxAfr3.scaffold_15           39450524 2 -  55688157 TC
i loxAfr3.scaffold_15          I 1 C 0
s triMan1.JH594766                 17304 2 +   6345240 TC
i triMan1.JH594766             I 1 C 0
s monDom5.chr8                 137893277 2 - 312544902 TT
i monDom5.chr8                 I 9 C 0
s sarHar1.chr5_GL861647_random    318604 2 -   4230514 CT
i sarHar1.chr5_GL861647_random I 9 C 0
s macEug2.GL108065                 83414 2 -    187545 CT
i macEug2.GL108065             I 9 C 0
s ornAna1.Ultra479               3870911 2 -   6008416 TG
i ornAna1.Ultra479             C 0 C 0
s colLiv1.KB375358               1019052 2 +   1462937 ta
i colLiv1.KB375358             I 1 C 0
s falChe1.KB398074               4262850 2 -   7151304 tg
i falChe1.KB398074             I 1 C 0
s falPer1.KB391107               2215467 2 -   3101084 tg
i falPer1.KB391107             I 1 C 0
s ficAlb2.chr1A                 24320715 2 +  74947036 CT
i ficAlb2.chr1A                C 0 I 14
s zonAlb1.KB913045              12581455 2 +  16390125 tt
i zonAlb1.KB913045             I 5731 C 0
s taeGut2.chr1A                 23692114 2 +  73657157 TT
i taeGut2.chr1A                T 537 C 0
s pseHum1.KB221193               9788835 2 +  32995986 tt
i pseHum1.KB221193             C 0 I 1
s melUnd1.JH556589               7679495 2 -   7952740 TG
i melUnd1.JH556589             I 5368 C 0
s amaVit1.KB277496                  6927 2 -     10329 CG
i amaVit1.KB277496             I 4 C 0
s araMac1.KE026486                  2916 2 -     24340 TA
i araMac1.KE026486             T 666 C 0
s cheMyd1.KB478633               2433115 2 +   6037886 TC
i cheMyd1.KB478633             I 1 C 0
s anoCar2.chrUn_GL344195           43571 2 +     59083 TC
i anoCar2.chrUn_GL344195       C 0 C 0
s tetNig2.chr13                  4299614 1 -  13302670 -t
i tetNig2.chr13                C 0 I 1
s neoBri1.JH422276               4184796 2 -  16571924 TT
i neoBri1.JH422276             T 338 C 0
s hapBur1.JH425411               1656730 2 +   1983257 TT
i hapBur1.JH425411             T 338 C 0
s mayZeb1.JH720588               2493346 2 +   2778784 tt
i mayZeb1.JH720588             T 338 C 0
s punNye1.JH419232               4767382 2 +   5065651 tt
i punNye1.JH419232             T 338 C 0
e takFla1.KE121866                209731 0 +    220559 I
e fr3.chr10                      9064512 0 +   9126174 I
e allMis1.JH737798                 79301 8 +    106177 I
e galGal4.chrUn_AADN03023623        2011 0 -      5081 I
e geoFor1.JH740049                182930 0 -   1550430 I
e melGal1.chr1                  24924577 4226 + 204065131 I
e anaPla1.KB743807                  5455 0 +     81650 C
e apaSpi1.KB929104                 22324 0 +    818693 I
e chrPic2.chrUn_KK088237v1       1206822 0 +  22294289 I
e pelSin1.JH211051                 23303 0 +    476004 I

a score=80844.000000
s hg38.chr8_KI270814v1_alt        122559 6 +    141812 TT---CTCA
s panTro4.chr8                  55025044 6 + 143986469 TT---CTCA
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59165631 6 + 153482349 TT---CTCA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81381247 6 - 104879549 CT---CTCA
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61692588 6 + 150158102 TC---CTCA
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366421 6 + 146850525 TC---CTCA
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53286958 6 + 139301422 TC---CTCA
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33707641 6 + 155834243 CT---CTCA
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4062713 6 +   9144518 AT---CTCC
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1562235 6 -   1847653 CT---CTGA
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1179526 6 -   7152218 CT---CTCA
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                  8097 6 -     34802 CT---CTCA
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2912866 6 -  11690531 CT---CTCG
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10872820 6 +  33672925 CT---CTCA
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9905869 6 +  34209287 CT---CTCA
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3118806 6 -   3193751 CT---CTCA
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                236463 6 -   2104649 CT---TTCA
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39450526 6 -  55688157 TT---TTTA
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 17306 6 +   6345240 TT---CTTA
i triMan1.JH594766             C 0 C 0
s monDom5.chr8                 137893279 6 - 312544902 CT---TTCT
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    318606 6 -   4230514 TT---CTCA
i sarHar1.chr5_GL861647_random C 0 C 0
s macEug2.GL108065                 83416 6 -    187545 CT---CTCA
i macEug2.GL108065             C 0 C 0
s ornAna1.Ultra479               3870913 6 -   6008416 TG---CTAC
i ornAna1.Ultra479             C 0 C 0
s colLiv1.KB375358               1019054 4 +   1462937 -----ttta
i colLiv1.KB375358             C 0 C 0
s falChe1.KB398074               4262852 4 -   7151304 -----ttta
i falChe1.KB398074             C 0 C 0
s falPer1.KB391107               2215469 4 -   3101084 -----ttta
i falPer1.KB391107             C 0 C 0
s ficAlb2.chr1A                 24320731 6 +  74947036 ta---ttta
i ficAlb2.chr1A                I 14 C 0
s zonAlb1.KB913045              12581457 6 +  16390125 ta---ttta
i zonAlb1.KB913045             C 0 C 0
s geoFor1.JH739914               5157181 6 -   7168866 ta---ttta
i geoFor1.JH739914             T 543 C 0
s taeGut2.chr1A                 23692116 6 +  73657157 TA---TTTA
i taeGut2.chr1A                C 0 C 0
s pseHum1.KB221193               9788838 4 +  32995986 -----ttta
i pseHum1.KB221193             I 1 C 0
s melUnd1.JH556589               7679497 7 -   7952740 TAC--TTTA
i melUnd1.JH556589             C 0 C 0
s amaVit1.KB277496                  6929 6 -     10329 TG---TTTA
i amaVit1.KB277496             C 0 C 0
s araMac1.KE026486                  2918 7 -     24340 TAC--TTTA
i araMac1.KE026486             C 0 C 0
s anaPla1.KB743807                  5455 3 +     81650 -a---tt--
i anaPla1.KB743807             C 0 C 0
s allMis1.JH737798                 79309 6 +    106177 TT---TTTT
i allMis1.JH737798             I 8 C 0
s cheMyd1.KB478633               2433117 6 +   6037886 --AT-CTTA
i cheMyd1.KB478633             C 0 C 0
s anoCar2.chrUn_GL344195           43573 6 +     59083 ---TTTTCA
i anoCar2.chrUn_GL344195       C 0 C 0
s tetNig2.chr13                  4299616 6 -  13302670 tt---ttca
i tetNig2.chr13                I 1 C 0
s fr3.chr9                       3741044 6 -  13922460 TT---CTTA
i fr3.chr9                     T 428 C 0
s takFla1.KE120500                510786 6 +    663757 TT---CTTA
i takFla1.KE120500             T 428 C 0
s neoBri1.JH422276               4184798 6 -  16571924 TT---ATTA
i neoBri1.JH422276             C 0 C 0
s hapBur1.JH425411               1656732 6 +   1983257 TT---ATTA
i hapBur1.JH425411             C 0 C 0
s mayZeb1.JH720588               2493348 6 +   2778784 tt---ttta
i mayZeb1.JH720588             C 0 C 0
s punNye1.JH419232               4767384 6 +   5065651 tt---ttta
i punNye1.JH419232             C 0 C 0
e galGal4.chrUn_AADN03023623        2011 0 -      5081 I
e melGal1.chr1                  24924577 4226 + 204065131 I
e apaSpi1.KB929104                 22324 0 +    818693 I
e chrPic2.chrUn_KK088237v1       1206822 0 +  22294289 I
e pelSin1.JH211051                 23303 0 +    476004 I

a score=32627.000000
s hg38.chr8_KI270814v1_alt        122565 2 +    141812 AT
s panTro4.chr8                  55025050 2 + 143986469 AT
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59165637 2 + 153482349 AT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81381253 2 - 104879549 CT
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61692594 2 + 150158102 AT
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366427 2 + 146850525 AT
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53286964 2 + 139301422 AT
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33707647 2 + 155834243 CT
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4062719 2 +   9144518 GT
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1562241 2 -   1847653 CT
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1179532 2 -   7152218 TG
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                  8103 2 -     34802 TG
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2912872 2 -  11690531 GT
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10872826 2 +  33672925 CT
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9905875 2 +  34209287 CT
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3118812 2 -   3193751 TT
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                236469 2 -   2104649 CT
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39450532 2 -  55688157 CT
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 17312 2 +   6345240 CT
i triMan1.JH594766             C 0 C 0
s monDom5.chr8                 137893285 2 - 312544902 TC
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    318612 1 -   4230514 -T
i sarHar1.chr5_GL861647_random C 0 C 0
s macEug2.GL108065                 83422 2 -    187545 TT
i macEug2.GL108065             C 0 C 0
s ornAna1.Ultra479               3870919 2 -   6008416 AT
i ornAna1.Ultra479             C 0 C 0
s colLiv1.KB375358               1019058 2 +   1462937 at
i colLiv1.KB375358             C 0 C 0
s falChe1.KB398074               4262856 2 -   7151304 at
i falChe1.KB398074             C 0 C 0
s falPer1.KB391107               2215473 2 -   3101084 at
i falPer1.KB391107             C 0 C 0
s ficAlb2.chr1A                 24320737 2 +  74947036 ct
i ficAlb2.chr1A                C 0 C 0
s zonAlb1.KB913045              12581463 2 +  16390125 at
i zonAlb1.KB913045             C 0 C 0
s geoFor1.JH739914               5157187 2 -   7168866 at
i geoFor1.JH739914             C 0 C 0
s taeGut2.chr1A                 23692122 2 +  73657157 AT
i taeGut2.chr1A                C 0 C 0
s pseHum1.KB221193               9788842 2 +  32995986 at
i pseHum1.KB221193             C 0 C 0
s melUnd1.JH556589               7679504 2 -   7952740 AT
i melUnd1.JH556589             C 0 C 0
s amaVit1.KB277496                  6935 2 -     10329 AT
i amaVit1.KB277496             C 0 C 0
s araMac1.KE026486                  2925 2 -     24340 AT
i araMac1.KE026486             C 0 C 0
s allMis1.JH737798                 79315 2 +    106177 AT
i allMis1.JH737798             C 0 C 0
s pelSin1.JH208680               8417330 2 -  16024077 AT
i pelSin1.JH208680             T 1978 C 0
s tetNig2.chr13                  4299622 2 -  13302670 tt
i tetNig2.chr13                C 0 C 0
s fr3.chr9                       3741050 2 -  13922460 AT
i fr3.chr9                     C 0 C 0
s takFla1.KE120500                510792 2 +    663757 AT
i takFla1.KE120500             C 0 C 0
s neoBri1.JH422276               4184804 2 -  16571924 CT
i neoBri1.JH422276             C 0 C 0
s hapBur1.JH425411               1656738 2 +   1983257 CT
i hapBur1.JH425411             C 0 C 0
s mayZeb1.JH720588               2493354 2 +   2778784 ct
i mayZeb1.JH720588             C 0 C 0
s punNye1.JH419232               4767390 2 +   5065651 ct
i punNye1.JH419232             C 0 C 0
e anoCar2.chrUn_GL344195           43579 0 +     59083 C
e galGal4.chrUn_AADN03023623        2011 0 -      5081 I
e melGal1.chr1                  24924577 4226 + 204065131 I
e anaPla1.KB743807                  5458 0 +     81650 C
e apaSpi1.KB929104                 22324 0 +    818693 I
e cheMyd1.KB478633               2433123 0 +   6037886 C
e chrPic2.chrUn_KK088237v1       1206822 0 +  22294289 I

a score=5963125.000000
s hg38.chr8_KI270814v1_alt        122567 136 +    141812 TTTGTAGGATGGTTCCACATTTGGCCTGTGCCAATGGCTGCCCAGAAGTGGTAACTTTTCTGGTGCACAGAAAATGCCAGCTTAACATCTGTGACAGTGAAAACAAGACACCTCTAACGAAGG--T-A--TATAGTAGC--C-A
s panTro4.chr8                  55025052 136 + 143986469 TTCGTAGGATGGCTCCACATTTGGCCTGTGCCAATGGCTGCCCAGAAGTGGTAACTTTTCTGGTGCACAGAAAATGCCAGCTTAACATCCGTGACAGTGAAAACAAGACACCTCTAACGAAGG--T-A--TATAGTAGC--C-A
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59165639 138 + 153482349 TTCCTAAGATGGCTCTACATTTGGCCTGTGCCAATGGCTGCCCAGAAGTGGTAACTTTTCTGGTGCACAGAAAATGCCAGCTTAACATCTGTGACAGTGAAAACAAGACACCTCTAACGAAGGTAT-A--TATAGTAGC--C-A
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81381255 136 - 104879549 CTCGTAGGACTGCTCTACACTGGGCCTGTGCCAATGGCCATGCAGAAGTAGTAACACTTCTGGTAGATAGAAAGTGCCAGCTTGACGTCCTTGATGGTGAAAACAGGACACCTCTGATGAAGG--T-A--AATGGTAGC--C-A
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61692596 136 + 150158102 TTCGCAGGATGGCTCTACATTTGGCCTGTGCCAATGACTGTCCAGAAGTCGTAACTTTTCTGGTGCACAGAAAATACCAGCTTAACATCTGTGACAGTGAAAAGAAGACACTTCTAACGAAGG--A-A--TATAGTAGC--C-A
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366429 136 + 146850525 TTCGCAGGATGGCTCTACATTTGGCCTGTGCCAATGACTGTCCAGAAGTGGTAACTTTTCTGGTGCACAGAAAATGCCAGCTTACCATCTGTGACAGTGAAAAGAAGACACTTCTAACGAAGG--A-A--TATAGTAGC--C-A
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53286966 136 + 139301422 TTCGCAGGATGGCTCTACATTTGGCCTGTGCCAATGACTGTCCAGAAGTGGTAACTTTTCTGGTGCACAGAAAATGCCAGCTTAACATCTGTGACAGTGAAAAGAAGACACTTCTAACAAAGG--A-A--TATAGTAGC--C-A
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33707649 136 + 155834243 CTCATAGGACTGCGCTACACTTGGCCTGTGCCTTCGGCCATGAGAAAGTGGTAACTTTACTGGTAGACAGAAAATGCCAGATTGACGTCTGTGACAAGGAACACAGGACACCTCTGATGAAGG--T-A--AATAGTAGC--C-A
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4062721 136 +   9144518 TTCATAGGACTGCTCTGCATTTGGCCTGTGCCAATGGTCATCCAACAGTGGTAGCTCTTCTGGTGAACAGTGGATGTCAACTTAATGTCTTTGATGACAAAAACAGGACACCTCTGGTAAAGG--T-A--CATAGTAGC--C-A
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1562243 136 -   1847653 TTCATAGGACCGCTCTCCATCTGGCCTGTACCAAAGGCCATTTAGCAGTGGTGATTCTCCTGCTGGAAAGACAATGCCAACTTAACATCTGTGACAGAGAAAAGAGGACACCTCTGATGAAGG--T-A--TATAGTAAC--C-A
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1179534 136 -   7152218 TTCATAGGACTGCTCTCCATTTGGCCTGTGCCAATGGCCATTCAGCAGTGGTGACTCTCCTGGTAGAGAGAAGATGCCAGCTGAACCTCTATGACAATGAAAACAGGACAGCGCTGATGAAGG--T-G--TGTAGCAGC--C-A
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                  8105 136 -     34802 TTCGTAGGACTGCTCTCCATTTGGCCTGTGCCAATGGCCATTCAGCAGTGGTGACTCTCCTGGTAGAGAGAAGATGCCAGCTGAACCTCTTTGACAATGAAAACAGGACAGCGCTGATGAAGG--T-T--CGTAGCGGC--C-A
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2912874 136 -  11690531 TTCGTAGGACTGCTCTCCATTTGGCCTGTGCCAGTGGCCATCCAGCAGTGGTAACTCTCCTAGTGGAGAGAAAATGCCAGCTTAACCTCTGTGACAACGAAAACAGGACAGCGCTGATGAAGG--T-A--CATAGTAGC--C-A
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10872828 136 +  33672925 TTCATAGGACTGCTCTGCATTTGGCCTGTGCCAATGGCCATCCAGAAGTGGTAACTCTCCTAGTAGAGAGAAAATGCCAGCTTAACCTCTGTGACAGCGAAAACAGAACAGCTCTGATGAAGG--T-A--TGTAGTAGC--C-A
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9905877 136 +  34209287 TTCATAGGACTGCTCTGCATTTGGCCTGTGCCAATGGCTATCCAGAAGTGGTAACTCTCCTTGTAGAGAGAAAATGCCAGCTTAACCTTTGTGACAGTGAAAACAGAACAGCTCTGATAAAGG--T-A--TGTAGTAGC--C-A
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3118814 135 -   3193751 TTTATAGGACTGCTCTACATTTGGCCTGTGCCAACGGCCATCCAGAAGTGGTAACTCTCCTGGCAGACCGAAAATGTCAGCTTAACCTCTGTGACAGCGAAAATAGGACAGCTCTGATTAAGG--T-A--CAGAG-ACC--C-A
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                236471 136 -   2104649 TTCATAGGACTGCTCTACATTTGGCCTGTGCCAATGGCCATCCAGGAGTGGTAACTCTGCTAGCAGACAGAAAATGCCTGTTGAACCTCTGTGATAATGAAAACAGGACAGCTCTGATTAAGG--T-A--TGTAGTAGC--C-A
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39450534 136 -  55688157 TTCATAGGACTGCTCTACATTTGGCCTGTGCCAATGGCCATCCAGAAGTGGTAACTCTCCTAGTAGAGAGAAAATGCCAGCTTAACCTCTGTGACAGTGAAAACAGGACAGCTCTGATTAAGG--T-A--TGTAGTAGC--C-A
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 17314 137 +   6345240 TTCCTAGGACTGCTCTACATTTGGCCTGTGCCAATGGCCATCCAGAAGTGGTAACTCTCCTAGTAGAGAGAAAATGCCAGCTTAACGTCTGTGATAGCGAAAACAGGACCGCTCTGATTAAGG--TAA--AGTAGTAGC--T-A
i triMan1.JH594766             C 0 C 0
s monDom5.chr8                 137893287 136 - 312544902 TCTGTAGGACACCTTTGCACATTGCCTGTGCCAGTGGATATCCAGATGTTGTTTCTCTTTTAGTAGAGAGAAATTGCAAGCTAAATTTGTGCGATGGGGATAATCGAACTCCTTTAATTAAGG--T-T--TGTACAAGT--T-A
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    318613 136 -   4230514 TCCATAGGACTCCTCTCCATCTGGCCTGTGCAAAAGGATATCCAGATGTTGTGTCTCTCTTAGtacaaagaaaatgtaaactaaaCTTGTGTGATAATGACAACCGAACACCTTTAATTAAGG--T-A--CTCATTAGT--T-A
i sarHar1.chr5_GL861647_random C 0 C 0
s macEug2.GL108065                 83424 136 -    187545 TCCATAGGACACCTCTACACCTGGCCTGCGCAAATGGATATCCAGATCTTGTATCTCTCTTAGTAGAGAGAAAATGCAAACTAAACCTGCATGACAATGACTGTCAGACTCCTTTAATTAAGG--T-A--TTCACTAGT--T-A
i macEug2.GL108065             C 0 C 0
s ornAna1.Ultra479               3870921 132 -   6008416 TTTATAGGACACCGTTGCACCTTGCCTGTGCCAAGGGATTTCCAGAAGTTGTGAGTCTCTTAGTTGAAAATAAATGCAAACTGAACCTCTTTGACAGTGATAACCAATCTCCCCTGATGAAGG--T-A--AGTACCA-------
i ornAna1.Ultra479             C 0 C 0
s colLiv1.KB375358               1019060 134 +   1462937 -ttttaggaCACCTCTGCATCTCGCCTGCGCGAATGGCCACGTGGCTGTTGTTACACATTTGGTAGAAAGCAAGTGTAAGCTAAATCTTCTTGACAGTGATAACAGATCACCCCTGATGAAGG--T-A--TGTGGAATA--C--
i colLiv1.KB375358             C 0 C 0
s falChe1.KB398074               4262858 134 -   7151304 -ttttaggACGCCTCTGCATCTCGCTTCTGCGAATGGCCATGTGAATGTTGTTACATATCTAGTGGAAAACAATTGTAAGTTAAATCTTACTGACGGTGATAACAGATCACCACTGATGAAGG--T-A--TGTGGAATA--T--
i falChe1.KB398074             C 0 C 0
s falPer1.KB391107               2215475 134 -   3101084 -ttttaggACGCCTCTGCATCTCGCTTCTGCGAATGGCCATGTGAATGTTGTTACATATCTAGTGGAAAACAATTGTAAGTTAAATCTTACTGACGGTGATAACAGATCACCACTGATGAAGG--T-A--TGTGGAATA--T--
i falPer1.KB391107             C 0 C 0
s ficAlb2.chr1A                 24320739 134 +  74947036 -ttttaggACAGCTCTGCATCTTGCTTGTGCAAATGGCCACGTGGATATAGTTATGTATCTAGTAGAAAACAAGTGTAAGCTAAATCTTTTTGACAATGATAACAGATCGCCACTGATGAAGG--T-A--CGTGGATTA--T--
i ficAlb2.chr1A                C 0 C 0
s zonAlb1.KB913045              12581465 134 +  16390125 -ttttaggaCGGCTCTGCATCTTGCTTGTGCAAATGGCCACGTGGATGTAGTTACATTTCTAGTAGAAAACAAGTGCAAGCTAAATCTTTTTGACAATGATAACAGATCACCACTGATGAAGG--T-A--CGTAGACTA--T--
i zonAlb1.KB913045             C 0 C 0
s geoFor1.JH739914               5157189 134 -   7168866 -ttttaggaCAGCTCTGCATCTTGCTTGTGCAAATGGCCATGTGGATGTAGTTACATTTCTAGTAGAAAACAAGTGTAAGCTAAATCTTTTTGACAATGATAACAGATCACCACTGATGAAGG--T-A--CGTGGACTA--T--
i geoFor1.JH739914             C 0 C 0
s taeGut2.chr1A                 23692124 134 +  73657157 -TTTTAGGACAGCTTTGCATCTTGCTTGTGCAAATGGCCATGTGGATGTCGTTACGTTTCTAGTAGAAAACAAATGTAAGCTCAATCTCTTTGACAATGATAACAGGTCACCACTGATGAAGG--T-A--CGTGGACTA--T--
i taeGut2.chr1A                C 0 C 0
s pseHum1.KB221193               9788844 134 +  32995986 -ttttaggaCAGCTCTGCATCTTGCTTGTGCAAATGGCCATGTGGATGTAGTTATGTATCTAGTAGAAAACAAGTGTAAGCTAAATCTTTTTGACAATGATAACAGAACGCCACTGATGAAGG--T-A--CGTGGACTA--T--
i pseHum1.KB221193             C 0 C 0
s melUnd1.JH556589               7679506 134 -   7952740 -TTTTAGGACACCTCTGCATCTTGCTTGTGCAAACGGCCTTGCGGATGTTGTCACATACCTCATAGAAAACAAGTGTGAGTTAAATCTTGTTGACAATGGTAACAGATGGCCACTGATGAAGG--T-A--TGTGGAATA--T--
i melUnd1.JH556589             C 0 C 0
s amaVit1.KB277496                  6937 134 -     10329 -TTCTAGGACACCTCTGCATCTTGCTTGTGAGAATGGGCATGCAGATGTCGTTCGATTTCTGGCAGAAAATCAGTGCCACCTAGACCCTTGtgacaaagacaagaaaacGCCACTGATGAGGG--T-A--CGTGGAAAA--T--
i amaVit1.KB277496             C 0 C 0
s araMac1.KE026486                  2927 134 -     24340 -TTTTAGGACACCTCTGCATCTTGCTTGTGCAAATGGCCATGTGGATGTTGTCACATACCTCATAGAAAACAAGTGTAAGCTAAATCTTTTTGACAATGATAACAGATCGCCACTGATGAAGG--T-A--TGTGGAATA--T--
i araMac1.KE026486             C 0 C 0
s anaPla1.KB743807                  5458 135 +     81650 tttttaggACACCACTGCATCTTGCTTGCGCAAATGGACATGTGGATGTCGTTACATACCTAGTAGAAAACAAGTGTAAGCTCAATCTTTTTGACAATGATAACAGATCGCCACTGATGAAGG--T-A--TGTGGAATG--T--
i anaPla1.KB743807             C 0 C 0
s galGal4.chr1                  24067090 135 + 195276750 tttttaggACACCACTGCATCTTGCTTGTGCAAATGGACATGCGGATGTCGTTACGTTTCTAGTAGAAAGCAAGTGTAAGCTAAATCTTTTTGACAATGATAACAGATCACCACTGATGAAGG--T-A--AGTAGAACA--T--
i galGal4.chr1                 T 542 C 0
s melGal1.chr1                  24928803 135 + 204065131 TTTTTAGGACACCACTGCATCTTGCTTGTGCAAATGGACATGCGGATGTCGTTACGTTTCTAGTAGAAAACAAGTGTAAGCTAAATGTTTTTGACAGTGATAACAGATCACCACTGATGAAGG--T-A--AGTAGAACA--T--
i melGal1.chr1                 I 4226 C 0
s allMis1.JH737798                 79317 137 +    106177 TTTGTAGGACTCCTTTGCATTTGGCATGTGCAAATGGACATCTAGATATTGTTTCCTATTTAATTGAGAACAAGTGCAAGCTAAATCTCTGTGACAACGATAGCAGGTCACCATTAATGAAGG--T-A--TGTAGAATACTT--
i allMis1.JH737798             C 0 C 0
s cheMyd1.KB478633               2433123 137 +   6037886 TTTTTAGGACACCTTTGCATCTTGCCTGTGCTAATGGACATTCAGATGTTGTTACTTATTTAGTGGACAACAAGTGCAAACTAAATCTGTGTGACAATGATAACAGATCCCCGTTGATGAAGG--T-A--TGCACAGTATTT--
i cheMyd1.KB478633             C 0 C 0
s chrPic2.chr2                  18523046 137 -  68452538 TTTTTAGGACACCTTTGCATCTTGCCTGTGCTAATGGGCATTTAGATGTCGTTACTTACTTAGTGGACAACAAGTGCAAACTAAATCTGTGTGACAATGATAACAGATCCCCGTTGATGAAGG--T-A--TGCACAGTATTT--
i chrPic2.chr2                 T 544 C 0
s pelSin1.JH208680               8417332 133 -  16024077 TTTTCAGGACACCTTTGCATCTTGCCTGCGCTAATGGACATTCAGATGTTGTTTCTTACTTAGTGGACAATAAGTGCAAATTGAACCTGTGTGACAATGATAACAGATCTCCATTGATGAAGG--T-A--TGCACAG----T--
i pelSin1.JH208680             C 0 C 0
s anoCar2.chrUn_GL344195           43579 130 +     59083 ------GAACACCTTTGCATTTTGCCTGCGCCAATGGATGCATAGATGTTGTTACTTTTTTAGTAAGCAACCAATGCCAGCTAGATCTCTACGATAGTGATACAAGAACTCCATTAATGAAGG--T-A--TGTATGAGA--CA-
i anoCar2.chrUn_GL344195       C 0 I 329
s tetNig2.chr13                  4299624 134 -  13302670 CCTACAGAACTGCGCTTCATATTGCCTGTGCCAGTGGACATGTTGAGGTGGTGCATTTTCTTCTTGAGAGAAAAGCCAGGCTTAACCTATGTGATAATCAAAACAGATCCGCTTTAATGAAGG--T-AATCCAACAT-------
i tetNig2.chr13                C 0 C 0
s fr3.chr9                       3741052 134 -  13922460 CTTTCAGAACTGCACTTCATATTGCCTGTGCCAGCGGACACGTTGAGGTGGTGCATTTTCTCCTTGAGAGAAAAGCAAGGCTTAACCTGTGTGACAATCAAAACAGATCCGCTTTAATGAAGG--T-AATCCTAGAT-------
i fr3.chr9                     C 0 C 0
s takFla1.KE120500                510794 134 +    663757 CTTTCAGAACTGCACTTCATATTGCCTGTGCCAGCGGACACGTTGAGGTGGTGCATTTTCTCCTTGAGAGAAAAGCAAGGCTTAACCTGTGTGACAATCAAAACAGATCCGCTTTAATGAAGG--T-AATCCTAGAT-------
i takFla1.KE120500             C 0 C 0
s neoBri1.JH422276               4184806 135 -  16571924 GTTGCAGAACCGCACTGCATATTGCCTGTGCTAGTGGTCATGTCGAGGTGGTACACTTCCTCGTTGAGAGCAAAGCCAAGCTTAACCTATGTGACAATCAAAATAGATCTGCCTTAATGAAGG--T-AATCTTGGATG------
i neoBri1.JH422276             C 0 C 0
s hapBur1.JH425411               1656740 135 +   1983257 GTTGCAGAACCGCACTGCATATTGCCTGTGCTAGTGGTCATGTCGAGGTGGTACACTTCCTCATTGAGAGCAAAGCCAAGCTTAACCTATGTGACAATCAAAATAGATCTGCCTTAATGAAGG--T-AATCTTGGATG------
i hapBur1.JH425411             C 0 C 0
s mayZeb1.JH720588               2493356 135 +   2778784 gttgcagAACCGCACTGCATATTGCCTGTGCTAGTGGTCATGTCGAGGTGGTACACTTCCTCGTTGAGAGCAAAGCCAAGCTTAACCTATGTGACAATCAAAATAGATCTGCCTTAATGAAGG--T-AATCTTGGATG------
i mayZeb1.JH720588             C 0 C 0
s punNye1.JH419232               4767392 135 +   5065651 gttgcagAACCGCACTGCATATTGCCTGTGCTAGTGGTCATGTCGAGGTGGTACACTTCCTCGTTGAGAGCAAAGCCAAGCTTAACCTATGTGACAATCAAAATAGATCTGCCTTAATGAAGG--T-AATCTTGGATG------
i punNye1.JH419232             C 0 C 0
e apaSpi1.KB929104                 22324   0 +    818693 I

a score=15910.000000
s hg38.chr8_KI270814v1_alt        122703 23 +    141812 GTTCTTTCAGC--ATGAG------ATGGATT---
s panTro4.chr8                  55025188 23 + 143986469 GTTCTTTCAGC--ATGAG------ATGGATT---
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59165777 23 + 153482349 GTTCTTTCAGC--ATGAG------ATGGATT---
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81381391 23 - 104879549 GTTCTTTCAGC--AGGAG------ATGGATT---
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61692732 23 + 150158102 GTTCTTTCAGC--ATGAG------ATGGATT---
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366565 23 + 146850525 GTTCTTTCAGC--ATGAG------ATGGATT---
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287102 23 + 139301422 GTTCTTTCAGC--ATGAG------ATGGATT---
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33707785 23 + 155834243 GTGCTTTCAGC--AGGAG------ATGGATT---
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4062857 23 +   9144518 ATGATTTCAGC--ATGAG------ATGGATT---
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1562379 23 -   1847653 ACTATTTCAGC--ATGAG------ATAGATT---
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1179670 23 -   7152218 ACTGTGTCCAC--GTGAG------ATGGATT---
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                  8241 23 -     34802 ACTGTGTCCAC--GTGAG------ATGGATT---
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2913010 23 -  11690531 ACCATGTCAAC--GTGAG------ATGGATT---
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10872964 23 +  33672925 ACTATGTCAAG--ATGCG------ACAGAGT---
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9906013 23 +  34209287 AGTATGCCAGC--ATGAG------ATGGATT---
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3118949 23 -   3193751 ACTCTGTCAAC--ATGCG------ATGGATT---
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                236607 23 -   2104649 ACTATGTCAAC--ATGAG------GTGGATT---
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39450670 23 -  55688157 GCTATTTCAGT--ATGAA------ATGGATT---
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 17451 23 +   6345240 GCTATTTCAGT--ATGAA------ATGGATT---
i triMan1.JH594766             C 0 C 0
s monDom5.chr8                 137893423 25 - 312544902 CCTGTGCTGCTCAGGGAA------ATGCATT---
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    318749 25 -   4230514 ACCATGCTGGTCAatgaa------atgcttt---
i sarHar1.chr5_GL861647_random C 0 C 0
s macEug2.GL108065                 83560 25 -    187545 ACCATGTTGGTCTACATA------ATGCATT---
i macEug2.GL108065             C 0 C 0
s ornAna1.Ultra479               3871053 21 -   6008416 --TGAGTCTGT--ATGAA------ATGTATA---
i ornAna1.Ultra479             C 0 C 0
s colLiv1.KB375358               1019194 23 +   1462937 GTTATGTGCTT--GTAAG------TGGGGCT---
i colLiv1.KB375358             C 0 C 0
s falChe1.KB398074               4262992 23 -   7151304 GTTATACTCTT--GTAAG------TGGGACT---
i falChe1.KB398074             C 0 C 0
s falPer1.KB391107               2215609 23 -   3101084 GTTATACTCTT--GTAAG------TGGGACT---
i falPer1.KB391107             C 0 C 0
s ficAlb2.chr1A                 24320873 23 +  74947036 GGTATATTCTT--GCAAG------TGAGACT---
i ficAlb2.chr1A                C 0 C 0
s zonAlb1.KB913045              12581599 23 +  16390125 GGTATGTTCTT--GCAAG------TGAGACT---
i zonAlb1.KB913045             C 0 C 0
s geoFor1.JH739914               5157323 23 -   7168866 GATATGTTCTT--GCAAG------TGAGACT---
i geoFor1.JH739914             C 0 C 0
s taeGut2.chr1A                 23692258 23 +  73657157 AGTATGTTCTT--GCAAG------CGAGACG---
i taeGut2.chr1A                C 0 C 0
s pseHum1.KB221193               9788978 23 +  32995986 GGTATGTTCTT--GCAAG------TGAGGTT---
i pseHum1.KB221193             C 0 C 0
s melUnd1.JH556589               7679640 23 -   7952740 GTTACGTTCTT--GTAAG------TGGAGCT---
i melUnd1.JH556589             C 0 C 0
s amaVit1.KB277496                  7071 23 -     10329 GTTCTGCTGTT--GTATG------TTGGGCT---
i amaVit1.KB277496             C 0 C 0
s araMac1.KE026486                  3061 23 -     24340 ATTATGTTCTT--GTAAG------TAGAGCT---
i araMac1.KE026486             C 0 C 0
s anaPla1.KB743807                  5593 23 +     81650 GTTATCCTACT--CAAAG------TGGGGCT---
i anaPla1.KB743807             C 0 C 0
s galGal4.chr1                  24067225 23 + 195276750 GTTATGCTGCT--GCAAC------TAGGAAT---
i galGal4.chr1                 C 0 C 0
s melGal1.chr1                  24928938 23 + 204065131 GTTATGCCGCT--GCAAG------TAGGAAT---
i melGal1.chr1                 C 0 C 0
s allMis1.JH737798                 79454 29 +    106177 GTTATGATTGT--GCCAGATGTATCAGTATT---
i allMis1.JH737798             C 0 C 0
s cheMyd1.KB478633               2433260 23 +   6037886 AATGCAGTTAT--GTAAG------ATGTACT---
i cheMyd1.KB478633             C 0 I 12
s chrPic2.chr2                  18523183 23 -  68452538 AATGCAGTTAT--GTAAG------ATGTACT---
i chrPic2.chr2                 C 0 I 12
s pelSin1.JH208680               8417465 23 -  16024077 TATGTAGTTAT--GTAAG------ATGTACT---
i pelSin1.JH208680             C 0 I 1573
s tetNig2.chr13                  4299758 23 -  13302670 ---ATGCTGTA--GGAAG------GGGCGGAATC
i tetNig2.chr13                C 0 C 0
s fr3.chr9                       3741186 23 -  13922460 ---ATACTGTA--GGGAT------GGAGTCAGTC
i fr3.chr9                     C 0 C 0
s takFla1.KE120500                510928 23 +    663757 ---ATACTGTA--GGGAT------GGAGTCAGTC
i takFla1.KE120500             C 0 C 0
s neoBri1.JH422276               4184941 23 -  16571924 ---ATGGCGCT--TCAAG------TTGGTGACTC
i neoBri1.JH422276             C 0 C 0
s hapBur1.JH425411               1656875 23 +   1983257 ---ATGGCGCT--TCAAG------TTGGTGACTC
i hapBur1.JH425411             C 0 C 0
s mayZeb1.JH720588               2493491 23 +   2778784 ---ATGCCGCT--TCAAG------TTGGTGACTC
i mayZeb1.JH720588             C 0 C 0
s punNye1.JH419232               4767527 23 +   5065651 ---ATGCCGCT--TCAAG------TTGGTGACTC
i punNye1.JH419232             C 0 C 0
e anoCar2.chrUn_GL344195           43709 329 +     59083 I
e apaSpi1.KB929104                 22324  0 +    818693 I

a score=-78722.000000
s hg38.chr8_KI270814v1_alt        122726 5 +    141812 TGGCT---
s panTro4.chr8                  55025211 5 + 143986469 TGGCT---
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59165800 5 + 153482349 TGGCT---
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81381414 5 - 104879549 TGGTT---
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61692755 5 + 150158102 TGGCT---
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366588 5 + 146850525 TGGCT---
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287125 5 + 139301422 TGGCT---
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33707808 5 + 155834243 TGGTT---
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4062880 5 +   9144518 TGGTA---
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1562402 5 -   1847653 TGATT---
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1179693 5 -   7152218 CGATG---
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                  8264 5 -     34802 CGATG---
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2913033 5 -  11690531 TGATT---
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10872987 5 +  33672925 TGATT---
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9906036 5 +  34209287 TGATT---
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3118972 5 -   3193751 TGATT---
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                236630 5 -   2104649 TGATT---
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39450693 5 -  55688157 TGATT---
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 17474 5 +   6345240 TCATT---
i triMan1.JH594766             C 0 C 0
s monDom5.chr8                 137893448 5 - 312544902 TTAAT---
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    318774 5 -   4230514 ttgat---
i sarHar1.chr5_GL861647_random C 0 C 0
s macEug2.GL108065                 83585 5 -    187545 TTGAT---
i macEug2.GL108065             C 0 C 0
s ornAna1.Ultra479               3871074 5 -   6008416 CGTAT---
i ornAna1.Ultra479             C 0 C 0
s colLiv1.KB375358               1019217 4 +   1462937 -TATT---
i colLiv1.KB375358             C 0 I 1
s falChe1.KB398074               4263015 4 -   7151304 -TGTC---
i falChe1.KB398074             C 0 I 1
s falPer1.KB391107               2215632 4 -   3101084 -TGTC---
i falPer1.KB391107             C 0 I 1
s ficAlb2.chr1A                 24320896 4 +  74947036 -TACT---
i ficAlb2.chr1A                C 0 I 1
s zonAlb1.KB913045              12581622 4 +  16390125 -TACT---
i zonAlb1.KB913045             C 0 I 1
s geoFor1.JH739914               5157346 4 -   7168866 -TACT---
i geoFor1.JH739914             C 0 I 1
s taeGut2.chr1A                 23692281 4 +  73657157 -TACT---
i taeGut2.chr1A                C 0 I 1
s pseHum1.KB221193               9789001 4 +  32995986 -TACT---
i pseHum1.KB221193             C 0 I 1
s melUnd1.JH556589               7679663 4 -   7952740 -TATT---
i melUnd1.JH556589             C 0 I 1
s amaVit1.KB277496                  7094 4 -     10329 -ATTC---
i amaVit1.KB277496             C 0 I 1
s araMac1.KE026486                  3084 4 -     24340 -TATC---
i araMac1.KE026486             C 0 I 1
s anaPla1.KB743807                  5616 4 +     81650 -TATT---
i anaPla1.KB743807             C 0 I 1
s galGal4.chr1                  24067248 4 + 195276750 -TATT---
i galGal4.chr1                 C 0 I 1
s melGal1.chr1                  24928961 4 + 204065131 -TATT---
i melGal1.chr1                 C 0 I 1
s allMis1.JH737798                 79483 4 +    106177 -AATT---
i allMis1.JH737798             C 0 I 1
s cheMyd1.KB478633               2433295 5 +   6037886 CCACT---
i cheMyd1.KB478633             I 12 C 0
s chrPic2.chr2                  18523218 5 -  68452538 CCACT---
i chrPic2.chr2                 I 12 C 0
s tetNig2.chr13                  4299781 5 -  13302670 ---TTTCA
i tetNig2.chr13                C 0 C 0
s fr3.chr9                       3741209 5 -  13922460 ---TATTA
i fr3.chr9                     C 0 C 0
s takFla1.KE120500                510951 5 +    663757 ---TATTA
i takFla1.KE120500             C 0 C 0
s neoBri1.JH422276               4184964 2 -  16571924 ---tt---
i neoBri1.JH422276             C 0 C 0
s hapBur1.JH425411               1656898 2 +   1983257 ---tt---
i hapBur1.JH425411             C 0 C 0
s mayZeb1.JH720588               2493514 2 +   2778784 ---tt---
i mayZeb1.JH720588             C 0 C 0
s punNye1.JH419232               4767550 2 +   5065651 ---tt---
i punNye1.JH419232             C 0 C 0
e anoCar2.chrUn_GL344195           43709 329 +     59083 I
e apaSpi1.KB929104                 22324 0 +    818693 I
e pelSin1.JH208680               8417488 1573 -  16024077 I

a score=-375115.000000
s hg38.chr8_KI270814v1_alt        122731 15 +    141812 TAAA------------TACATAGAATA------
s panTro4.chr8                  55025216 15 + 143986469 TAAA------------TACATAGAATA------
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59165805 15 + 153482349 TAAA------------TACATAGAATA------
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81381419 15 - 104879549 TAAA------------TACATAGAATA------
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61692760 15 + 150158102 TAAA------------TACATAGAATA------
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366593 15 + 146850525 TAAA------------TACATAGAATA------
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287130 15 + 139301422 TAAA------------TATATAGAATA------
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33707813 11 + 155834243 TAA----------------ATAGAATA------
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4062885 15 +   9144518 CAAA------------TACATAGAATA------
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1562407 15 -   1847653 TAAA------------CATGTAGAACC------
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1179698 15 -   7152218 TAAC------------TGCTTAGAATA------
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                  8269 15 -     34802 TAAC------------TACTTAGAATA------
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2913038 15 -  11690531 TAAC------------TACTTAGAATA------
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10872992 15 +  33672925 TAAT------------GACTTAGAATA------
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9906041 15 +  34209287 TAAT------------TACTTCAAATA------
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3118977 15 -   3193751 TAAT------------TATGGAGAGCA------
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                236635 15 -   2104649 CAAT------------TACTTAGGGTA------
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39450698 15 -  55688157 TAAA------------TACTTAGAATG------
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 17479 15 +   6345240 TAAA------------TACTTACAATG------
i triMan1.JH594766             C 0 C 0
s monDom5.chr8                 137893453 15 - 312544902 TTCT------------CACTTGGATGA------
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    318779 15 -   4230514 ttct------------CTCCTTGACTA------
i sarHar1.chr5_GL861647_random C 0 C 0
s macEug2.GL108065                 83590 15 -    187545 TTCT------------CTCTTTGATTA------
i macEug2.GL108065             C 0 C 0
s ornAna1.Ultra479               3871079 15 -   6008416 CATT------------TTAGTAGAAGA------
i ornAna1.Ultra479             C 0 I 458
s colLiv1.KB375358               1019222 11 +   1462937 ----------------ATTATGCACTA------
i colLiv1.KB375358             I 1 I 1
s falChe1.KB398074               4263020 11 -   7151304 ----------------ACTGTGCATTA------
i falChe1.KB398074             I 1 I 1
s falPer1.KB391107               2215637 11 -   3101084 ----------------ACTGTGCATTA------
i falPer1.KB391107             I 1 I 1
s ficAlb2.chr1A                 24320901 11 +  74947036 ----------------ATTTGGAACTA------
i ficAlb2.chr1A                I 1 I 1
s zonAlb1.KB913045              12581627 11 +  16390125 ----------------ATTTTGAACTA------
i zonAlb1.KB913045             I 1 I 1
s geoFor1.JH739914               5157351 11 -   7168866 ----------------ACTTTGAACTA------
i geoFor1.JH739914             I 1 I 1
s taeGut2.chr1A                 23692286 11 +  73657157 ----------------CTTTTGAACTA------
i taeGut2.chr1A                I 1 I 1
s pseHum1.KB221193               9789006 11 +  32995986 ----------------ATTATGAacta------
i pseHum1.KB221193             I 1 I 1
s melUnd1.JH556589               7679668 11 -   7952740 ----------------ATTATGCACTA------
i melUnd1.JH556589             I 1 I 1
s amaVit1.KB277496                  7099 11 -     10329 ----------------CTTACGCACTG------
i amaVit1.KB277496             I 1 I 1
s araMac1.KE026486                  3089 11 -     24340 ----------------ATTAGGCAGTA------
i araMac1.KE026486             I 1 I 1
s anaPla1.KB743807                  5621 11 +     81650 ----------------ATTACATGTTA------
i anaPla1.KB743807             I 1 I 1
s galGal4.chr1                  24067253 11 + 195276750 ----------------CTTATGTATTA------
i galGal4.chr1                 I 1 I 1
s melGal1.chr1                  24928966 11 + 204065131 ----------------ATTATGTACTA------
i melGal1.chr1                 I 1 I 1
s allMis1.JH737798                 79488 11 +    106177 ----------------CCAGTTAGTTA------
i allMis1.JH737798             I 1 I 1
s cheMyd1.KB478633               2433300 27 +   6037886 TAACTACAAATTCTGTATTATGGAATG------
i cheMyd1.KB478633             C 0 I 1
s chrPic2.chr2                  18523223 27 -  68452538 TAACTACAAACTCTGTATTATGGAATG------
i chrPic2.chr2                 C 0 I 1
s apaSpi1.KB929668               5961204  8 -  12308914 -------------TACATCA------A------
i apaSpi1.KB929668             T 297 I 1
s tetNig2.chr13                  4299786 13 -  13302670 --------------------CAGAATTTTTCTG
i tetNig2.chr13                C 0 C 0
s fr3.chr9                       3741214 13 -  13922460 --------------------CAGAATAATTCTG
i fr3.chr9                     C 0 C 0
s takFla1.KE120500                510956 13 +    663757 --------------------CAGAATAATTCTG
i takFla1.KE120500             C 0 C 0
s neoBri1.JH422276               4184966 11 -  16571924 ----------------------aataaattgta
i neoBri1.JH422276             C 0 C 0
s hapBur1.JH425411               1656900 11 +   1983257 ----------------------aataaattgta
i hapBur1.JH425411             C 0 C 0
s mayZeb1.JH720588               2493516 11 +   2778784 ----------------------aataaattgta
i mayZeb1.JH720588             C 0 C 0
s punNye1.JH419232               4767552 11 +   5065651 ----------------------aataaactgta
i punNye1.JH419232             C 0 C 0
e anoCar2.chrUn_GL344195           43709 329 +     59083 I
e pelSin1.JH208680               8417488 1573 -  16024077 I

a score=65611.000000
s hg38.chr8_KI270814v1_alt        122746 6 +    141812 AAAATG
s panTro4.chr8                  55025231 6 + 143986469 AAAATG
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59165820 6 + 153482349 AAAATG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81381434 6 - 104879549 AAAATG
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61692775 6 + 150158102 AAAATG
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366608 6 + 146850525 AAAATG
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287145 6 + 139301422 AAAATG
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33707824 6 + 155834243 AAAAAT
i calJac3.chr7                 C 0 I 1
s saiBol1.JH378196               4062900 6 +   9144518 AAATAC
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1562422 6 -   1847653 AAAATG
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1179713 6 -   7152218 AAATTG
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                  8284 6 -     34802 AAATTG
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2913053 6 -  11690531 AAAATG
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10873007 6 +  33672925 AAAATG
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9906056 6 +  34209287 AAAATG
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3118992 6 -   3193751 GAAATG
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                236650 6 -   2104649 AAAATG
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39450713 5 -  55688157 AAA-TG
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 17494 5 +   6345240 AAA-TG
i triMan1.JH594766             C 0 C 0
s monDom5.chr8                 137893468 6 - 312544902 AGAAAA
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    318794 6 -   4230514 AGAAAA
i sarHar1.chr5_GL861647_random C 0 C 0
s macEug2.GL108065                 83605 6 -    187545 AGAAAA
i macEug2.GL108065             C 0 C 0
s ornAna1.Ultra479               3871552 6 -   6008416 ATATTT
i ornAna1.Ultra479             I 458 C 0
s colLiv1.KB375358               1019234 6 +   1462937 ATGATG
i colLiv1.KB375358             I 1 I 116
s falChe1.KB398074               4263032 6 -   7151304 ACGGGA
i falChe1.KB398074             I 1 I 59
s falPer1.KB391107               2215649 6 -   3101084 ATGGGA
i falPer1.KB391107             I 1 I 59
s ficAlb2.chr1A                 24320913 6 +  74947036 AAGGTG
i ficAlb2.chr1A                I 1 I 89
s zonAlb1.KB913045              12581639 6 +  16390125 ATGatg
i zonAlb1.KB913045             I 1 I 45
s geoFor1.JH739914               5157363 6 -   7168866 ATgatg
i geoFor1.JH739914             I 1 I 45
s taeGut2.chr1A                 23692298 6 +  73657157 ATTATG
i taeGut2.chr1A                I 1 I 45
s pseHum1.KB221193               9789018 6 +  32995986 attatg
i pseHum1.KB221193             I 1 I 45
s melUnd1.JH556589               7679680 6 -   7952740 ACGATG
i melUnd1.JH556589             I 1 I 45
s amaVit1.KB277496                  7111 6 -     10329 GTGATG
i amaVit1.KB277496             I 1 I 46
s araMac1.KE026486                  3101 6 -     24340 GTGATG
i araMac1.KE026486             I 1 I 45
s anaPla1.KB743807                  5633 6 +     81650 ATGATG
i anaPla1.KB743807             I 1 I 49
s galGal4.chr1                  24067265 6 + 195276750 ATGATG
i galGal4.chr1                 I 1 I 68
s melGal1.chr1                  24928978 6 + 204065131 ATGGTG
i melGal1.chr1                 I 1 I 72
s allMis1.JH737798                 79500 6 +    106177 AAGATA
i allMis1.JH737798             I 1 I 75
s cheMyd1.KB478633               2433328 6 +   6037886 ATAAAG
i cheMyd1.KB478633             I 1 I 64
s chrPic2.chr2                  18523251 6 -  68452538 AAAAAG
i chrPic2.chr2                 I 1 I 70
s apaSpi1.KB929668               5961213 6 -  12308914 AAAATG
i apaSpi1.KB929668             I 1 I 52
s tetNig2.chr13                  4299799 6 -  13302670 ATCACT
i tetNig2.chr13                C 0 C 0
s fr3.chr9                       3741227 6 -  13922460 CTCAGT
i fr3.chr9                     C 0 C 0
s takFla1.KE120500                510969 6 +    663757 CTCAGT
i takFla1.KE120500             C 0 C 0
s neoBri1.JH422276               4184977 6 -  16571924 aaaatt
i neoBri1.JH422276             C 0 C 0
s hapBur1.JH425411               1656911 6 +   1983257 aaaatt
i hapBur1.JH425411             C 0 C 0
s mayZeb1.JH720588               2493527 6 +   2778784 aaaatt
i mayZeb1.JH720588             C 0 C 0
s punNye1.JH419232               4767563 6 +   5065651 aaaatt
i punNye1.JH419232             C 0 C 0
e anoCar2.chrUn_GL344195           43709 329 +     59083 I
e pelSin1.JH208680               8417488 1573 -  16024077 I

a score=-1651819.000000
s hg38.chr8_KI270814v1_alt        122752 38 +    141812 AAT------TTG-------TCTCAT---------------------------------TGAAATAT-AAC------TA--------GTTTGTGAAACCT--------------
s panTro4.chr8                  55025237 38 + 143986469 AAT------TTG-------TCTCAT---------------------------------TGAAATAT-AAC------TA--------GTTTGTGAAACCT--------------
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59165826 38 + 153482349 AAT------TTA-------TCTCAT---------------------------------TGAAATAT-AAC------TA--------GTTTGTGAAACCT--------------
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81381440 38 - 104879549 AAT------TTA-------TCTCAT---------------------------------TGAAATGT-AAC------TA--------GTTTGTGAAACCT--------------
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61692781 37 + 150158102 AAT------TTG-------TCTCAT---------------------------------TGAAATAT-AAC------TA--------GTTTGTG-AACCT--------------
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366614 38 + 146850525 AAT------TTG-------TCTCAT---------------------------------TGAAATAT-AAC------TA--------GTTTGTGAAACCT--------------
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287151 38 + 139301422 AAT------TTG-------TCTCAT---------------------------------TGAAATAT-AAC------TA--------GTTTGTGAAACCT--------------
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33707831 38 + 155834243 AAT------TTA-------TCTCAT---------------------------------TGAAATAC-AAC------TT--------GTTTGTGAACCCT--------------
i calJac3.chr7                 I 1 C 0
s saiBol1.JH378196               4062906 38 +   9144518 AAT------TCA-------TCTCGT---------------------------------TTAAGCAT-AAC------TC--------ATTGGTGAAAGTT--------------
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1562428 38 -   1847653 ATT------TTA-------TCTCAT---------------------------------TTAAATAT-AAT------TG--------GTTGGTGAAACCT--------------
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1179719 38 -   7152218 AAT------TTA-------TCAGTT---------------------------------TTAAATAT-AAT------GA--------ACTGATGGAACTT--------------
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                  8290 38 -     34802 AAT------TTA-------TCAGTT---------------------------------TTAAATAT-AAT------GA--------ACTGGTGGAACTT--------------
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2913059 38 -  11690531 GAT------TTA-------TCTCAT---------------------------------TTAAATAT-AAC------GA--------ATTGGTGAAACTT--------------
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10873013 38 +  33672925 AAT------TTA-------TCTCAT---------------------------------TTAAATAG-AAC------TA--------ATTGGTTAAACCT--------------
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9906062 38 +  34209287 AAT------TTA-------TCTCAT---------------------------------TTAAATAT-AAC------TA--------ATTGGTAAAACCT--------------
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3118998 38 -   3193751 AAT------TTG-------TCTTAT---------------------------------TTAACTAT-AAC------TA--------ATTGGTGAAACTT--------------
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                236656 36 -   2104649 AAT------TTA-------TCTCAT---------------------------------TTAACTGT-G--------TT--------ATTGGTAAAAATT--------------
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39450718 38 -  55688157 AAT------TTA-------TCTCAT---------------------------------TTAAATAT-AAC------TA--------ATTGGTAAAGTAT--------------
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 17499 38 +   6345240 AAT------TTG-------TCTCAT---------------------------------TTAAATAT-AAC------TA--------ATTAGTAAAATGT--------------
i triMan1.JH594766             C 0 I 752
s monDom5.chr8                 137893474 37 - 312544902 TATGTTTTCCTA-------ATATA----------------------------------TTAAATAC-CAG------AA--------G----TGATG-T---------------
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    318800 39 -   4230514 TATGCTTTACTA-------ACATTT---------------------------------TTATATGC-CAC------TA--------A----TGATACT---------------
i sarHar1.chr5_GL861647_random C 0 C 0
s macEug2.GL108065                 83611 39 -    187545 TATTCTTTACTA-------ACTTAT---------------------------------TTAAATAT-CAC------TA--------A----TGATGTT---------------
i macEug2.GL108065             C 0 C 0
s ornAna1.Ultra479               3871558 33 -   6008416 GAT------CTC-------TCTTAC---------------------------------TGTCTTTTGAAC------TA--------GTCTGGG--------------------
i ornAna1.Ultra479             C 0 C 0
s colLiv1.KB375358               1019356 31 +   1462937 ------GTGCTC-------TTGTTT---------------------------------TCCAGCAT-TGG------GA--------AGCTGG---------------------
i colLiv1.KB375358             I 116 C 0
s falChe1.KB398074               4263097 26 -   7151304 ------T----G------------------------------------------------GAATAG-GCA------TA--------TGTTAGCTAAGCT--------------
i falChe1.KB398074             I 59 C 0
s falPer1.KB391107               2215714 26 -   3101084 ------T----G------------------------------------------------GAATAG-GCA------TA--------TGTTAGCTAAGCT--------------
i falPer1.KB391107             I 59 C 0
s ficAlb2.chr1A                 24321008 49 +  74947036 ------TTCTAATATAATCTAATTA---------------------------------TGAGGTGC-TCG------TAATTCCCAGTATTAG-GAA-----------------
i ficAlb2.chr1A                I 89 C 0
s zonAlb1.KB913045              12581690 37 +  16390125 ------TTGTGA-------TTGTTG---------------------------------TGGAATGG-GCA------TA--------TATTAG-CAATCT--------------
i zonAlb1.KB913045             I 45 C 0
s geoFor1.JH739914               5157414 37 -   7168866 ------TTGTGA-------TTGTTG---------------------------------TGGAATGG-GCA------TA--------TGTTAG-CTATCT--------------
i geoFor1.JH739914             I 45 C 0
s taeGut2.chr1A                 23692349 38 +  73657157 ------TTGTGA-------TTGTTG---------------------------------TGGAATGG-GCA------TA--------TGTTAGCCAATCT--------------
i taeGut2.chr1A                I 45 C 0
s pseHum1.KB221193               9789069 38 +  32995986 ------TTGTGA-------TTGGTG---------------------------------GGGAATGG-GCA------TA--------TGCTAGCTAATCT--------------
i pseHum1.KB221193             I 45 C 0
s melUnd1.JH556589               7679731 38 -   7952740 ------TTGTAA-------TTGCTG---------------------------------TGGCATAG-GCA------TA--------TGTTAGGTAACGT--------------
i melUnd1.JH556589             I 45 C 0
s amaVit1.KB277496                  7163 38 -     10329 ------TTGTAG-------TCAGCA---------------------------------GGGAAGAG-GCA------TA--------TGTTGCCTGATCT--------------
i amaVit1.KB277496             I 46 C 0
s araMac1.KE026486                  3152 38 -     24340 ------TTGTAA-------TTGCTG---------------------------------TGGAATAG-GCA------TA--------TATTAGGTAATCT--------------
i araMac1.KE026486             I 45 C 0
s anaPla1.KB743807                  5688 40 +     81650 --------ATAG------CTAGTCT---------------------------------TGGAAGAG-GCT------TC----CCAGCATTGGGAATTT---------------
i anaPla1.KB743807             I 49 C 0
s galGal4.chr1                  24067339 48 + 195276750 ------TGCTAG------CTCATCT---------------------------------TAGAAGAT-GCTTTTATATT----CCAGGAGTGGGAAGTT---------------
i galGal4.chr1                 I 68 C 0
s melGal1.chr1                  24929056 65 + 204065131 ------TGCTAG------CTCATCTCAGAAGATGCTTTTATATTCCAGGAGTGGGAAGTTGTAGTA-GTTGTGACACA-----------------------------------
i melGal1.chr1                 I 72 C 0
s allMis1.JH737798                 79581 30 +    106177 ------TCTTCC-------TTATTT---------------------------------T---------CA------GA--------TTTTATGTTACTT--------------
i allMis1.JH737798             I 75 C 0
s cheMyd1.KB478633               2433398 20 +   6037886 ------tattaa-------tttcat---------------------------------------------------ta--------agtTGT---------------------
i cheMyd1.KB478633             I 64 C 0
s chrPic2.chr2                  18523327 20 -  68452538 ------tattaa-------tttcat---------------------------------------------------ta--------agtTGT---------------------
i chrPic2.chr2                 I 70 C 0
s tetNig2.chr13                  4299805 29 -  13302670 ----------------------------------------------------------------------------CA--------TTTGTTTAAACGTCCTACCAGTTGTTG
i tetNig2.chr13                C 0 C 0
s fr3.chr9                       3741233 29 -  13922460 ----------------------------------------------------------------------------GA--------TTTGTTGAAGCTTCTCAGTAGTTGTTT
i fr3.chr9                     C 0 C 0
s takFla1.KE120500                510975 29 +    663757 ----------------------------------------------------------------------------GA--------TTTGTTGAAGCTTCTCAGTAGTTGTTT
i takFla1.KE120500             C 0 C 0
s neoBri1.JH422276               4184983 22 -  16571924 ----------------------------------------------------------------------------aa--------tttttcctCACGTC-------TTGTTT
i neoBri1.JH422276             C 0 C 0
s hapBur1.JH425411               1656917 22 +   1983257 ----------------------------------------------------------------------------ca--------tttttcctCACGTC-------TTGTTT
i hapBur1.JH425411             C 0 C 0
s mayZeb1.JH720588               2493533 22 +   2778784 ----------------------------------------------------------------------------ca--------tttttcctcACGTC-------TTGTTT
i mayZeb1.JH720588             C 0 C 0
s punNye1.JH419232               4767569 22 +   5065651 ----------------------------------------------------------------------------aa--------tttttcctCACGTC-------TTGTTT
i punNye1.JH419232             C 0 C 0
e anoCar2.chrUn_GL344195           43709 329 +     59083 I
e apaSpi1.KB929668               5961219 52 -  12308914 I
e pelSin1.JH208680               8417488 1573 -  16024077 I

a score=-200182.000000
s hg38.chr8_KI270814v1_alt        122790 7 +    141812 GTGGAAT---
s panTro4.chr8                  55025275 7 + 143986469 GTGGAAT---
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59165864 7 + 153482349 GGGGAAT---
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81381478 7 - 104879549 GTGGAAT---
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61692818 7 + 150158102 GTGGAAT---
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366652 7 + 146850525 GTGGAAT---
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287189 7 + 139301422 GTGGAAT---
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33707869 7 + 155834243 GTGGAGT---
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4062944 7 +   9144518 GTGGAGT---
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1562466 7 -   1847653 GTGGAAT---
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1179757 7 -   7152218 GGGGAAT---
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                  8328 7 -     34802 GGGGAAT---
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2913097 7 -  11690531 CTGGAAT---
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10873051 7 +  33672925 GTGGAAT---
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9906100 7 +  34209287 GTGGAAT---
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3119036 7 -   3193751 GTAGAAT---
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                236692 7 -   2104649 GTGGAAT---
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39450756 7 -  55688157 TTGAAAT---
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 18289 7 +   6345240 gtgaaat---
i triMan1.JH594766             I 752 C 0
s monDom5.chr8                 137893511 7 - 312544902 TTAGTAT---
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    318839 7 -   4230514 TTAATAt---
i sarHar1.chr5_GL861647_random C 0 C 0
s macEug2.GL108065                 83650 7 -    187545 TTAGTAT---
i macEug2.GL108065             C 0 C 0
s colLiv1.KB375358               1019387 5 +   1462937 --GGGAA---
i colLiv1.KB375358             C 0 I 10
s falChe1.KB398074               4263123 7 -   7151304 TTGAAGG---
i falChe1.KB398074             C 0 I 44
s falPer1.KB391107               2215740 7 -   3101084 TTGAAGG---
i falPer1.KB391107             C 0 I 44
s ficAlb2.chr1A                 24321057 5 +  74947036 --GATGG---
i ficAlb2.chr1A                C 0 I 19
s zonAlb1.KB913045              12581727 7 +  16390125 TTGAAGG---
i zonAlb1.KB913045             C 0 I 26
s geoFor1.JH739914               5157451 7 -   7168866 TTGAAGG---
i geoFor1.JH739914             C 0 I 45
s taeGut2.chr1A                 23692387 7 +  73657157 TTGAAGG---
i taeGut2.chr1A                C 0 I 41
s pseHum1.KB221193               9789107 7 +  32995986 TTGAAGG---
i pseHum1.KB221193             C 0 I 45
s melUnd1.JH556589               7679769 7 -   7952740 TTGAGGA---
i melUnd1.JH556589             C 0 I 46
s amaVit1.KB277496                  7201 7 -     10329 TTGAAGG---
i amaVit1.KB277496             C 0 I 45
s araMac1.KE026486                  3190 7 -     24340 TCAAGGA---
i araMac1.KE026486             C 0 I 45
s anaPla1.KB743807                  5728 1 +     81650 ------G---
i anaPla1.KB743807             C 0 I 17
s galGal4.chr1                  24067387 1 + 195276750 ------G---
i galGal4.chr1                 C 0 I 16
s allMis1.JH737798                 79611 7 +    106177 GTAGTAA---
i allMis1.JH737798             C 0 I 11
s cheMyd1.KB478633               2433418 5 +   6037886 --GGCAA---
i cheMyd1.KB478633             C 0 I 10
s chrPic2.chr2                  18523347 5 -  68452538 --GGCAA---
i chrPic2.chr2                 C 0 I 10
s tetNig2.chr13                  4299834 7 -  13302670 ---CAGCTTC
i tetNig2.chr13                C 0 C 0
s fr3.chr9                       3741262 7 -  13922460 ---CAGTAGC
i fr3.chr9                     C 0 C 0
s takFla1.KE120500                511004 7 +    663757 ---CAGTAGC
i takFla1.KE120500             C 0 C 0
s neoBri1.JH422276               4185005 6 -  16571924 ---TGGCC-C
i neoBri1.JH422276             C 0 C 0
s hapBur1.JH425411               1656939 6 +   1983257 ---TGGCT-C
i hapBur1.JH425411             C 0 C 0
s mayZeb1.JH720588               2493555 6 +   2778784 ---TGGCC-C
i mayZeb1.JH720588             C 0 C 0
s punNye1.JH419232               4767591 6 +   5065651 ---TGGCC-C
i punNye1.JH419232             C 0 C 0
e ornAna1.Ultra479               3871591 0 -   6008416 C
e anoCar2.chrUn_GL344195           43709 329 +     59083 I
e melGal1.chr1                  24929121 0 + 204065131 C
e apaSpi1.KB929668               5961219 52 -  12308914 I
e pelSin1.JH208680               8417488 1573 -  16024077 I

a score=-32531.000000
s hg38.chr8_KI270814v1_alt        122797  9 +    141812 ACTT--------------------ATTTT
s panTro4.chr8                  55025282  9 + 143986469 ACTT--------------------ATTTT
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59165871  9 + 153482349 ACTT--------------------ATTTT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81381485  9 - 104879549 ATTT--------------------ATTTA
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61692825  9 + 150158102 ATTT--------------------ATTTT
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366659  9 + 146850525 ATTT--------------------ATTTT
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287196  9 + 139301422 ACTT--------------------CGTTT
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33707876  9 + 155834243 ATTT--------------------ATTTT
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4062951  9 +   9144518 GCTT--------------------ATTTT
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1562473  8 -   1847653 GTTT--------------------ATTT-
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1179764  9 -   7152218 GTTG--------------------ACTTG
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                  8335  9 -     34802 GTTG--------------------ACTTG
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2913104  9 -  11690531 GTTT--------------------ACTCT
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10873058  9 +  33672925 GTTT--------------------ATTCG
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9906107  9 +  34209287 GTTT--------------------ACTTT
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3119043  9 -   3193751 GTTT--------------------ACTTT
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                236699  9 -   2104649 GTTT--------------------ACTTT
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39450763  9 -  55688157 GTTT--------------------ACTTT
i loxAfr3.scaffold_15          C 0 I 1537
s triMan1.JH594766                 18296  9 +   6345240 gTTT--------------------ACTTC
i triMan1.JH594766             C 0 C 0
s monDom5.chr8                 137893518  9 - 312544902 CCTC--------------------AATTT
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    318846  9 -   4230514 acta--------------------aattt
i sarHar1.chr5_GL861647_random C 0 C 0
s macEug2.GL108065                 83657  9 -    187545 ACTA--------------------AATTT
i macEug2.GL108065             C 0 C 0
s ornAna1.Ultra479               3871591  7 -   6008416 -CTT--------------------ACTT-
i ornAna1.Ultra479             C 0 C 0
s colLiv1.KB375358               1019402  9 +   1462937 GTGA--------------------AATGT
i colLiv1.KB375358             I 10 C 0
s falChe1.KB398074               4263174  3 -   7151304 ------------------------ACT--
i falChe1.KB398074             I 44 C 0
s falPer1.KB391107               2215791  3 -   3101084 ------------------------ACT--
i falPer1.KB391107             I 44 C 0
s ficAlb2.chr1A                 24321081  5 +  74947036 ------------------------AATGT
i ficAlb2.chr1A                I 19 C 0
s zonAlb1.KB913045              12581760 29 +  16390125 ATGGAGGAATTGCTGCAAAGTGAAACTGT
i zonAlb1.KB913045             I 26 C 0
s geoFor1.JH739914               5157503 10 -   7168866 GTGAA-------------------ACTGT
i geoFor1.JH739914             I 45 C 0
s taeGut2.chr1A                 23692435  5 +  73657157 ------------------------ACTGT
i taeGut2.chr1A                I 41 C 0
s pseHum1.KB221193               9789159  9 +  32995986 GTGA--------------------AATGT
i pseHum1.KB221193             I 45 C 0
s melUnd1.JH556589               7679822  9 -   7952740 GTGG--------------------AATGT
i melUnd1.JH556589             I 46 C 0
s amaVit1.KB277496                  7253  9 -     10329 GAAA--------------------AACGT
i amaVit1.KB277496             I 45 C 0
s araMac1.KE026486                  3242  9 -     24340 GTGG--------------------AATGT
i araMac1.KE026486             I 45 C 0
s anaPla1.KB743807                  5746  9 +     81650 GTGA--------------------AACGT
i anaPla1.KB743807             I 17 C 0
s galGal4.chr1                  24067404  9 + 195276750 ATGA--------------------AATAT
i galGal4.chr1                 I 16 C 0
s melGal1.chr1                  24929121  9 + 204065131 ATGA--------------------AATAT
i melGal1.chr1                 C 0 C 0
s allMis1.JH737798                 79629  9 +    106177 GTAA--------------------AATTT
i allMis1.JH737798             I 11 C 0
s cheMyd1.KB478633               2433433  9 +   6037886 ATGG--------------------AATTT
i cheMyd1.KB478633             I 10 C 0
s chrPic2.chr2                  18523362  9 -  68452538 ATGG--------------------AGTTT
i chrPic2.chr2                 I 10 C 0
s pelSin1.JH208680               8419061  9 -  16024077 ATGG--------------------AATTT
i pelSin1.JH208680             I 1573 C 0
s apaSpi1.KB929668               5961271  9 -  12308914 ATGG--------------------AATTT
i apaSpi1.KB929668             I 52 C 0
s anoCar2.chrUn_GL344195           44038  9 +     59083 TTGA--------------------CATGT
i anoCar2.chrUn_GL344195       I 329 C 0
s tetNig2.chr13                  4299841  9 -  13302670 GTTT--------------------GTGTT
i tetNig2.chr13                C 0 C 0
s fr3.chr9                       3741269  9 -  13922460 ACTC--------------------ACCGT
i fr3.chr9                     C 0 C 0
s takFla1.KE120500                511011  9 +    663757 ACTC--------------------ACCGT
i takFla1.KE120500             C 0 C 0
s neoBri1.JH422276               4185011  9 -  16571924 GTTA--------------------ATGTT
i neoBri1.JH422276             C 0 C 0
s hapBur1.JH425411               1656945  9 +   1983257 GTTA--------------------ATGTT
i hapBur1.JH425411             C 0 C 0
s mayZeb1.JH720588               2493561  9 +   2778784 GTTA--------------------ATGTT
i mayZeb1.JH720588             C 0 C 0
s punNye1.JH419232               4767597  9 +   5065651 GTTA--------------------ATGTT
i punNye1.JH419232             C 0 C 0

a score=4729395.000000
s hg38.chr8_KI270814v1_alt        122806 137 +    141812 AAT-TTCCTACAATTT-ACAAT--TTATTTC--TT----GTTCTAATACTGACAGGCTATAATGTGCCAAGAAGA----TGTGAAACTATTCTGCTAGACCTTGGTGCTGATCCAAATATTACCGATGTCTATGGCAACACTGCTCTCCA-T
s panTro4.chr8                  55025291 137 + 143986469 AAT-TTCCTACAATTT-ACAAT--TTATTTC--TT----GTTCTAATACTGACAGGCTATAACATGCCAAGAAGA----TGTGAAACTATTCTGCTAGACCTTGGTGCTGATCCAAATATTACCGATGTCTATGGCAACACTGCTCTCCA-T
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59165880 137 + 153482349 AAT-TTCTTACAATTT-ACAAT--TTATTTC--TT----GTTCTAATATTGAAAGGCTATAACATGCCAAGAAGA----TGTGAAACTATTCTGCTAGACTTTGGTGCTGATCCAAATATTACAGATGTCTATGGCAACACTGCTCTCCA-T
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81381494 142 - 104879549 TAT-TTCCTATAATTT-ATAAT--TTACTTC--TT----GCTTTAATATCGACAGGCTCTGCAATGCCAGAGGGAGGCTTGTGCAAATATTCTCATAGATTCTGGTGCTGATCCAAATATTGTAGATGTGTATGGCAACACAGCTGTCCATT
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61692834 137 + 150158102 GAT-TTCCTACAATTT-ACGAT--TTATTTC--TT----GTTCTAATACTGATAGGTTCTAACATGCCAAGAAGA----TGTGAAACTATTCTGCTAGACTTTGGTGTTGATCCAAATATTGCAGATGTCTATGGCATCACTGCTCTCCA-C
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366668 137 + 146850525 GAT-TTCCTACAATTT-ACGAT--TTATTTC--TT----GTTCTAATACTGATAGGTTGTAACATGCCAAGAAGA----TGTGAAACTATTCTGCTAGACTTTGATGTTGATCCAAATATTGCAGATGTCTATGGCATCACTGCTCTCCA-C
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287205 137 + 139301422 GAT-TTCCTACAATTT-ACGAT--TTATTTC--TT----GTTCTAATACTGATAGGCTCTAACATGCCAAGAAGA----TGTGAAACTATTCTGCTAGACTTTGGTGCTGATCCAAATATTGCAGATGTCTATGGCAACACTGCTCTCCA-T
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33707885 142 + 155834243 GAT-TTCCAATAATTT-ATAAT--TTATTTC--TT----GCTTTAATACTGACAGGCTATACAATACCGGAAGGAGGGTTGTGCAAATATTCTGATAGATTCTGGTGCTGATATAACTATTGCTGATGTGAATGGCAACACGGCTCTCCACT
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4062960 142 +   9144518 GAA-CTCCTAGAATTT-ACAGT--CTGTTGT--TT----GGTCTAATACTGACAGGCGGTACAATGCCAGAAAGAGGAATGTGCGACTACTTTGCTAAAACTCGGCGCTGACCCAGATCTTCCAGATGTCTATGGCAATACTGCCCTACATT
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1562481 143 -   1847653 GAA-TTCCTAGAATTT-ATAAT-CTTATTTC--CT----GATTTAATGCCAACAGGCTGTACATTGCCAGGAATGGGAATGTGCTATTTCTCTACTGGAATATGGTGCTGATCCCAACCTTCAGGATATCTATGGCAATACTGCCCTCCATT
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1179773 142 -   7152218 GAA-TATCTAGCACTT-ACAGT--CTGTTTC--TT----GGCGTGATACCAACAGGCCGTACAGTGCCAAGAAGAGGCGTGTGTGACTATTCTGCTGGAACATGGTGCCGACCCAAACCTCACGGACGGTAGTGAAAACACTGCTCTCCACT
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                  8344 142 -     34802 GAA-TGCCTAACACTT-ACAGT--CTGTTTC--TT----GGCGTGATACCAACAGGCCATACAGTGCCAAGAAGAGGCGTGTGTGACAATTCTGCTGGAACATGGTGCCGACCCAAACCTCACAGACGGTAGTGAAAACACTGCTCTCCACT
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2913113 142 -  11690531 GAA-TTTCTAGAATTT-ACAGT--CTGTGTC--TT----GGCATAACACTTATAGGCCATACAATGCCAGGAAGAGGAGTGTGCAACTATTCTGCTGGAACATGGTGCCGACCCAAATGTCATGGATATCAGTGGCAACACTGCTCTCCACT
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10873067 142 +  33672925 GAA-TTCCTAGAATTT-ACAGT--TTATTTC--TT----GGCATAATACCAACAGGCTATACAATGCCAGCAAGAGGAATGTGCAACTATTCTGCTAGAACATGGTGCCGATCCAGATGTTACAGACGTCGGTGGCAATACTGCCCTCCACT
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9906116 142 +  34209287 GAA-TTCCTAGAATTT-ACAGT--TTATTTC--TT----GGCATAATACTGACAGGCCGTACAATGCCAGCAAGAGGAATGTGCAACTATTCTGCTAGAACATGGTGCTGATCCAAATCTTACGGACATCAGTGGCAATACTGCTCTCCACT
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3119052 142 -   3193751 GAA-TTCCTAACATTT-ACAGT--CTGCTTT--TT----GTCATAATACTGACAGGCCGTACAATGCCAGGAGGAGGAATGTGCAACTATTCTGCTGGAACATGGTGCCGATCCAAATATAATGGACACTGATGGCAACACGGCTCTGCACT
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                236708 142 -   2104649 AAA-TTACTAGAATTT-ATAAT--CTACTTT--TT----GGTATAATACTGACAGGCCGTACAAAGCCAGGAAGAGGAATGTGTAACTATTTTACTAGACCATGGTGCTGATCCAAACATAATGGACATCGATGGCAATACTGCTCTCCACT
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39452309 142 -  55688157 TAA-TTCCTAGAATTT-ATACT--CAGTTTC--TC----CTTATAATACTGACAGGCTGTACAGTGCCAGGAAGAGGAATGTGCAACTATTCTGCTAGAACATGGTGCCGACCCAAATCTTACGGACGTCAGTGGCAACACTGCTCTCCACT
i loxAfr3.scaffold_15          I 1537 C 0
s triMan1.JH594766                 18305 142 +   6345240 TAA-TTCCTAGAATTT-ATGCC--CTATTTC--TC----CTTACAATACTGACAGGCCGTACAGTGCCAGGAAGAGGAATGTGCAACTATTCTGCTAGAACATGGTGCTGACCCAAATCTTATGGATGTCAATGGCAACACTGCTCTCCACT
i triMan1.JH594766             C 0 C 0
s monDom5.chr8                 137893527 132 - 312544902 --C--------AATGTAACA----TTATGTC--TC----TATCTTATATTAACAGGCTGTACAGTGTCAGCAGGAAGAATGTGCAACTATCCTGCTCAGCCATGGTGCAGACCCCAATGTTGTGGATACCAGAAGCAACACTGCCCTTCACT
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    318855 139 -   4230514 --tatatttagagtat-tta----ttatctc--tt----tgtatTATACTGACAGGCAGTACAGTGTCAGCAGGAGGAGTGTGCAACAATCCTGCTGGAACATGGTGCAGACCCTAATCTTGTGGACTCGAACAACAACACTGCACTTCACT
i sarHar1.chr5_GL861647_random C 0 C 0
s macEug2.GL108065                 83666 142 -    187545 --T-TTCTTCGAGTAT-TTA----TTGTCTC--TTTCTCTATATTCCATTGACAGGCAGTACAGTGTCAGCAAGAAGAGTGTGCAACTATCCTGCTTGAACATGGTGCAGACCCTAGTATTATGGATACCCACCACAACACTGCACTTCACT
i macEug2.GL108065             C 0 C 0
s ornAna1.Ultra479               3871598 132 -   6008416 -----------AATGT-AGAAT--CTAATTCCGTT----GGTTTGATTC--GTAGGCAATAGAATGCCAGAAGGAACAGTGTGCAATTATCCTGCTGGATCACGATGCAGACCCCAACCTTGTGGATGCCAAGCACAATACTGCCCTTCATT
i ornAna1.Ultra479             C 0 C 0
s colLiv1.KB375358               1019411 134 +   1462937 -AA-ACGCTGGAAGTT-TTCCC--T---------T----TGTGTGTTGTTCCCAGGCAGTACAGtgccagcaagaaaaatgtgtggCTATTCTACTAGAACATGGTGCTGAACCAAATCTGGCAGATTCTGATGGCAACACTGCCCTGCATC
i colLiv1.KB375358             C 0 C 0
s falChe1.KB398074               4263177 129 -   7151304 ------GCTGGAAGTT-CTTCC------------T----TTTGTGCTCTTCCCAGGCAGTACAGTGCCATCAAGAAGAATGTGTAGCTATTCTGCTAGAGCACGGTGCCAACCCACATCTGGCAGATGCTGACGGCAACACTGCCCTTCACC
i falChe1.KB398074             C 0 C 0
s falPer1.KB391107               2215794 129 -   3101084 ------GCTGGAAGTT-CTTCC------------T----TTTGTGCTCTTCCCAGGCAGTACAGTGCCATCAAGAAGAATGTGTAGCTATTCTGCTAGAGCACGGTGCCAACCCACATCTGGCAGATGCTGACGGCAACACTGCCCTTCACC
i falPer1.KB391107             C 0 C 0
s ficAlb2.chr1A                 24321086 130 +  74947036 -AA-ATGATGgaagtt-tt---------------t----tgtcttttgtttccaGGCAGTACAGTGCCAGCAAGAAAAATGTGTGGCTATTCTGCTAGAACATGGTGCTGACCCAAATCTGGCAGATGCTGATGGCAACACTGCCCTTCACC
i ficAlb2.chr1A                C 0 C 0
s zonAlb1.KB913045              12581789 130 +  16390125 -AA-ATGCTGgaagtt-tt---------------t----tgtgttttgtttccagGCAGTACAATGCCAGCAAGAAAAATGTGTGGCTATTCTGCTAGAACATGGTGCTGACCCCAATCTGGCAGATGCTGATGGCAACACTGCCCTTCACC
i zonAlb1.KB913045             C 0 C 0
s geoFor1.JH739914               5157513 130 -   7168866 -AA-ATGCTCaaagtt-tt---------------t----tgtgttttgtttccagGCAGTACAGTGCCAGCAAGAAAAATGTGTGGCTATTCTGCTAGAACATGGTGCTGACCCAGATCTGGCAGATGCTGATGGCAACACTGCCCTTCACC
i geoFor1.JH739914             C 0 C 0
s taeGut2.chr1A                 23692440 130 +  73657157 -AA-AGGCTGGAAGTT-TG---------------T----TGTGTTTTGTTTCCAGGCAGTACAGTGCCAGCAAGAAAAATGTGTGGCTATTCTGCTAGAACATGGTGCTGACCCAAATCTGGTAGATGCTGATGGCAACACTGCCCTTCATC
i taeGut2.chr1A                C 0 C 0
s pseHum1.KB221193               9789168 130 +  32995986 -AA-ATGCTGgaagtt-tt---------------t----tgtgttttgtttccagGCAGTACAGTGCCAGCAAGAAAAATGTGTGGCTATTCTGCTAGAACGTGGTGCTGACCCAAATCTGGCAGATGCTGATGGCAACACTGCCCTTCACC
i pseHum1.KB221193             C 0 C 0
s melUnd1.JH556589               7679831 137 -   7952740 -AA-ATGTTGGaaatt-tttcc--c----tt--ct----tgtgtGTTGTTCCCAGGCGGTACAGTGCCAGCAAGAAAAGTGTGTGGCTATTCTGCTAGAGCATGGTGCTGACCCAGATCTGGCAGATGCAGATGGGAATAGTGCCGTTCATC
i melUnd1.JH556589             C 0 C 0
s amaVit1.KB277496                  7262 137 -     10329 -CT-CTGTTGGTAGTC-ATTCC--T----CC--TT----TCTGTCTTGTTTCCAGGCAGTAGAGTCCAGGCACGAAGACTGTGTAGCTACTCTGCTGGAGCTCGGTGCCCAAACTGACCTCAGAGATTTTGCTGGCAACACTGCCCTTCACC
i amaVit1.KB277496             C 0 C 0
s araMac1.KE026486                  3251 136 -     24340 -AA-ATGTTGGaaatt-tttcc--c----tt--ct----tgtgtA-TGTTCCCAGGCGGTACAGTGCCAGCAAGAAAAGTGTGTGGCTGTTCTGCTAGAGCATGGTGCTGACCCAAATCTGGCAGATGTGGATGGGAATACTGCCCTTCATC
i araMac1.KE026486             C 0 C 0
s anaPla1.KB743807                  5755 133 +     81650 -GA-ctgttgca-------att--tt--ttt--tc----cttgtattgtTTCCAGGCAGTACaatgccagaaagaaaaatgtgtggCTATCTTGCTGGAGCACGGTGCTGATCCAAACTTGGCAGATGCTAGTGGCAACACTGCCCTTCAct
i anaPla1.KB743807             C 0 C 0
s galGal4.chr1                  24067413 139 + 195276750 -GA-CTGCTGGAAGTT-Ttacc--tt--ttt--tg----tgtgtgttgtttcCAGGCAGTACAATGCCAGCAAGAAAAATGTGTGGCAATCCTGCTGGAGCACGGTGCTGATCCGAACTTGGCAGATGCTAACGGCAACACTGCCCTTCACC
i galGal4.chr1                 C 0 C 0
s melGal1.chr1                  24929130 139 + 204065131 -GA-CTGCTGGAAATT-TTACT--TT--TTT--TG----TGTGCGTTGTTTTCAGGCAGTACAATGCCAGCAAGAAAAATGTGTGGTAATCCTGCTAGAGCACGGTGCTGATCCGAACCTGGGAGATGCTAGCGGCAACACTGCCCTTCACC
i melGal1.chr1                 C 0 C 0
s allMis1.JH737798                 79638 139 +    106177 -AA-CTTCTAGAATTT-ATTAC--CT--CTT--TT----TGTGTTATACTTCCAGGCAGTACAATGCCAACAAGAAAAATGTGCAACTCTGCTGCTAGAACGTGGCGCAGACCCTAATCTTGTTGATGCTAACTGCAACACGGCCCTTCACT
i allMis1.JH737798             C 0 C 0
s cheMyd1.KB478633               2433442 139 +   6037886 -AA-CTTTCAGAattt-attct--ct--ctt--tt----tctgttaTATTCACAGGCAGTACAATGCCAGCAGGAAAAATGTGCAACTATGCTGCTAGAACATGGTGCAGACCCTAATCTTGTGGATGTTAACAGCAGCACTGCCCTTCATC
i cheMyd1.KB478633             C 0 C 0
s chrPic2.chr2                  18523371 139 -  68452538 -AA-CTTACGGAATTT-ATTCT--CT--CTT--TT----TCTGTTATATTCACAGGCAGTACAATGCCAGCAGGAAAAATGTGCAACTATGCTGCTAGAACATGGTGCAGAACCTAATCTTGTGGATGTTAACAGCAACACTGCCCTTCACC
i chrPic2.chr2                 C 0 C 0
s pelSin1.JH208680               8419070 141 -  16024077 -AG-TTTGCCAGATTT-ATTCTCACT--CTT--TT----TCTATTACATTTACAGGCAGTACAGTGCCAGCAGGAAAAATGTGTAACCTTACTGCTAGAACATGGTGCAGACCCTAATCTTGTGGATGTTAATAGCAACACTGCCTTTCACC
i pelSin1.JH208680             C 0 C 0
s apaSpi1.KB929668               5961280 141 -  12308914 -AG-TTTGTCAGATTT-ATTCTCACT--CTT--TT----TCTATTACATTTACAGGCAGTACAGTGCCAGCAGGAAAAATGTGTAACTTTGCTGCTAGAACATGGCGCAGACCCTAATCTTGTGGATGTTAACAGCAACACTGCCCTTCACC
i apaSpi1.KB929668             C 0 C 0
s anoCar2.chrUn_GL344195           44047 128 +     59083 ---------GGGGCTA-ACTTC--CT--CTT--CT----TAAATGTTAT----AGGCTGTGCAGTGCCAGCAAGATTTATGTGCAATTTACCTGCTTGAGCAAGGAGCAGACCCTGATCTTGTGGATGCATACAGTAACACTGCCCTCCACT
i anoCar2.chrUn_GL344195       C 0 C 0
s tetNig2.chr13                  4299850 114 -  13302670 --------------------------------ATT----TCT-GTGCAATCTCAGGCAGTACAGTGCCAGCACGAGCGTTGTGTGAGGTTACTGCTGGAAAATGATGCTGACCCCAACCTGGTGGACATTGATGACAACACAGCTCTCCAT-
i tetNig2.chr13                C 0 C 0
s fr3.chr9                       3741278 114 -  13922460 --------------------------------ATT----TCT-GTCCAATGTCAGGCAGTGCAGTGTCAGCATGAGCGCTGTGTAAGGATACTGCTGGAAAATCATGCTGACCCCAATCTAGTGGACGTCGATGACAACACAGCCCTCCAT-
i fr3.chr9                     C 0 C 0
s takFla1.KE120500                511020 114 +    663757 --------------------------------ATT----TCT-GTCCAATGTCAGGCAGTGCAGTGTCAGCATGAGCGCTGTGTAAGGATACTGCTGGAAAATCATGCTGACCCCAATCTAGTGGACGTCGATGACAACACAGCCCTCCAT-
i takFla1.KE120500             C 0 C 0
s neoBri1.JH422276               4185020 115 -  16571924 --------------------------------AAT----TCTCATCTAATAACAGGCAGTTCAGGGCCAGCATGACAACTGTGTGAGCATACTGCTGGAAAATCATGCTGACCCTAATCTGATGGACATCAATGGCAATACGGCACTACAT-
i neoBri1.JH422276             C 0 N 0
s hapBur1.JH425411               1656954 115 +   1983257 --------------------------------AAT----TCTCATCTAATAACAGGCAGTTCAGGGCCAGCATGACAACTGTGTGAGCATACTGCTGGAAAATCATGCTGACCCTAATCTGATGGACATCAATGGCAATACGGCACTACAT-
i hapBur1.JH425411             C 0 N 0
s mayZeb1.JH720588               2493570 115 +   2778784 --------------------------------AAT----TCTCATCTAATAACAGGCAGTTCAGGGCCAGCATGACAACTGTGTGAGCATACTGCTGGAAAATCATGCTGACCCTAATCTGATGGACATCAATGGCAATACGGCACTACAT-
i mayZeb1.JH720588             C 0 N 0
s punNye1.JH419232               4767606 115 +   5065651 --------------------------------AAT----TCTCATCTAATAACAGGCAGTTCAGGGCCAGCATGACAACTGTGTGAGCATACTGCTGGAAAATCATGCTGACCCTAATCTGATGGACATCAATGGCAATACGGCACTACAT-
i punNye1.JH419232             C 0 N 0

a score=1549089.000000
s hg38.chr8_KI270814v1_alt        122943 62 +    141812 -ATGCTGTCTATAATGAGAATATGTCAATGGTAGCAA-GACTGTTTTCACACAAGACAAACATC
s panTro4.chr8                  55025428 62 + 143986469 -ATGCTCTCTATAATGAGAATATGTCAATGGTAGCAA-AACTGTTTTCACACAAGACAAACATC
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59166017 62 + 153482349 -ATGCTGTCTGTAATGAGAATATGTCAACGGTAGCAA-AACTGTTTTCACACAAGACAAACATC
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81381636 62 - 104879549 -ATGCTGTTTATAGTGAGAATTTGTCAGTGGTGGCAA-AATTGCTGTCTTGTGGTGCAGACATC
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61692971 63 + 150158102 -CTGCTGTCTGTAATGAGAGTATGTCAAAGGTAACAACAACTGTTTTCATACAAGACAAACATC
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366805 63 + 146850525 -CTGCTGTCTGTAATGAGAGTATGTCAAAGGTAACAACAACTGTTTTCATACAAGACAAACATC
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287342 62 + 139301422 -ATGCTGTCTGTAATGAGAATATGTCAATGGTAGCAA-AACTGTTTTCACACAAGACAAACATC
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33708027 62 + 155834243 -GTGCCATTTATATTGAGAGTTTGTCAATGGTGGCAA-AACTACTGTCCCATGGTGCAGACATC
i calJac3.chr7                 C 0 I 104
s saiBol1.JH378196               4063102 62 +   9144518 -ATGCTGTCTACAATGAGGATATCCCAATGACAAAAA-AACTGCTTTTGCATCATGCCAATAGT
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1562624 62 -   1847653 -ATGCTGTCTATAAGGAGAATATGTTGCTAGTAGAAA-AACTGCTTTCATACCATGCAGGTATT
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1179915 62 -   7152218 -ATGCTGTCTTGGCTGAGAATACGTCGATTGCAGCAA-AGCTGCTTTCCTACAATGCCAGTATT
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                  8486 62 -     34802 -ATGCTGTCTTGGCTGAGAATACGTCGATTGCAGCAA-AGCTGCTTTCCTACAATGCCAATATT
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2913255 62 -  11690531 -ATGCTGCCCTTTATCAGAATATATCACTCGCAGCAA-AGCTGCTTTCACACGACGCCAACATT
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10873209 62 +  33672925 -ATGCTGCTCGTGGTGAGAATCTGTCAATAGCAGCAA-AGCTGCTTTCACACAACGCAAATATC
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9906258 62 +  34209287 -ATGCTGCTCGTGGTGAGAATCTGTCAATAGCAGCAA-AGCTGCTTTCACACAATGCAAATATC
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3119194 62 -   3193751 -ACGCTGTCGCTGGTCAGAATATGAACATAGCAGCAA-AGCTGCTTTTATATAAGGCCGATACT
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                236850 62 -   2104649 -ATGCTGTCCTTGGTCAAAATATAGTTATAGTGGAAA-AGCTGCTTTCATTCAAGGCAAATATT
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39452451 62 -  55688157 -ATGCTGCCTGTGGTCAGAATATATCAATAGCAGCAA-AACTGCTTTCACACGGTGCAAATATT
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 18447 62 +   6345240 -ATGCTGCCTGTGGTCAGAATATATCAATAGCAGCAA-AACTGCTTTCACACAATGCAAATATT
i triMan1.JH594766             C 0 C 0
s monDom5.chr8                 137893659 62 - 312544902 -ACTCTGCCCTTGGTCACAATAGAGCCATAGCAGCAA-AGCTGGTTGAACACAAAGGTGATATT
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    318994 62 -   4230514 -ATGCTGCCTCTGGTCAGAACAAAGCCATAGCAGCAC-AGCTGCTTAAACATAAAGGTGATATT
i sarHar1.chr5_GL861647_random C 0 C 0
s macEug2.GL108065                 83808 62 -    187545 -ATGCTGCCTCTGGACATAACATAATGATAACAGCAA-AGCTGCTTAGATATAAAATAGAAATG
i macEug2.GL108065             C 0 C 0
s ornAna1.Ultra479               3871730 62 -   6008416 -ACGCTGCCTTAATTCCGAATGTATCTTTAGCAGGAC-ATCTGCTTGAACACCGAGCTCATATT
i ornAna1.Ultra479             C 0 C 0
s colLiv1.KB375358               1019545 62 +   1462937 -TGTCTGTCATCTCTCCTAATACAACTGTGGCAGAGC-TGCTACTTGATTATGATGCCAATATT
i colLiv1.KB375358             C 0 C 0
s falChe1.KB398074               4263306 62 -   7151304 -TTGCTGTCCGGTGTCCGAACACAACTGTAGCGGGGC-TCTTACTTGAGTATAATGCCAATATT
i falChe1.KB398074             C 0 C 0
s falPer1.KB391107               2215923 62 -   3101084 -TTGCTGTCCGGTGTCCGAACACAACTGTAGCGGGGC-TCTTACTTGAGTATAATGCCAATATT
i falPer1.KB391107             C 0 C 0
s ficAlb2.chr1A                 24321216 62 +  74947036 -TGGCTGTCCTGTCTAGTAATACTACTGTAGCAGGGT-TGTTACTTGAGCACAATGCCAATATT
i ficAlb2.chr1A                C 0 C 0
s zonAlb1.KB913045              12581919 62 +  16390125 -TGGCTGTTCTGTCTGGCAATACTGCTGTAGCAGGGC-TCTTACTTCAGCATGATGCCAATATT
i zonAlb1.KB913045             C 0 C 0
s geoFor1.JH739914               5157643 62 -   7168866 -TGGCTGTCCTGTCTGGTAATACTACTGTAGCAGGGC-TGTTACTTCAGCATAATGCCAATATT
i geoFor1.JH739914             C 0 C 0
s taeGut2.chr1A                 23692570 62 +  73657157 -TGGCTGTCCTGTCTGGTAATACTACTGTAGCAGGGC-TGTTACTTCAGCATGATGCCAATATT
i taeGut2.chr1A                C 0 C 0
s pseHum1.KB221193               9789298 62 +  32995986 -TGGCTGTCCTGCCTGGTAATACTACTGTAGCAGGGC-TGTTACTTGAGCATAATGCCAATATT
i pseHum1.KB221193             C 0 C 0
s melUnd1.JH556589               7679968 62 -   7952740 -TTCCTGTTATATCTCCTAATACATCTGCAGCAGGGC-TATTACTTGAGCATAATACTGGTATC
i melUnd1.JH556589             C 0 C 0
s amaVit1.KB277496                  7399 62 -     10329 -TGGCTACCTTAGCAAAGAGCAAACGTCTAGTGGAGC-TGTTACTGGAGCACAATGCCCATATT
i amaVit1.KB277496             C 0 C 0
s araMac1.KE026486                  3387 62 -     24340 -TTGCTGTTATATCTCCTAATACATCTGTAGCAGGGC-TATTACTTGAGCATAATGCCAATATT
i araMac1.KE026486             C 0 C 0
s anaPla1.KB743807                  5888 62 +     81650 -tggctgctgcagctccgaATGCATCTCTAGCAGAGA-TGTTACTTGAGCATAATGCCCATATC
i anaPla1.KB743807             C 0 C 0
s galGal4.chr1                  24067552 62 + 195276750 -TGGCTGCTGTAGCTCCTAACACATTTCTAGCAGGGA-TGTTAATTGAGCACAATGCCCATATT
i galGal4.chr1                 C 0 C 0
s melGal1.chr1                  24929269 62 + 204065131 -TGGCTGCTGTAGCTCCTAACACATTTCTGGCGGGGA-TATTAATTGAGCACAATGCCCATATT
i melGal1.chr1                 C 0 C 0
s allMis1.JH737798                 79777 62 +    106177 -TTGCTGCCTGTATTCCTAATATATCTCTAGCAATAG-AGTTACTTGAGCATGATGCTGATATT
i allMis1.JH737798             C 0 C 0
s cheMyd1.KB478633               2433581 62 +   6037886 -TGGCTGCCCAGACTGCTAATATATCTCTAGCAGTAC-TATTGCTTGAGTACAATGCCCATATT
i cheMyd1.KB478633             C 0 C 0
s chrPic2.chr2                  18523510 62 -  68452538 -TGGCTGCCCAGACTGCTAATATATCTCTAGTAGTAC-AATTGCTTGAGTACAATGCCCATATT
i chrPic2.chr2                 C 0 C 0
s pelSin1.JH208680               8419211 62 -  16024077 -TGGCTGCTCATACTGCTAATATATCTCTAGCAGTAC-AATTGCTTGAGTACAATGCCCATATT
i pelSin1.JH208680             C 0 C 0
s apaSpi1.KB929668               5961421 62 -  12308914 -TGGCTGCTCATACTGCTAATATATCTCTAGCAGTAC-AATTGCTTGAGTACAATGCCCAAATC
i apaSpi1.KB929668             C 0 C 0
s anoCar2.chrUn_GL344195           44175 62 +     59083 -TTGCTGCCTTTAATTCTAGCATATCAATAGCAAAGC-ATCTCCTTGAATATAATGCCAATGTT
i anoCar2.chrUn_GL344195       C 0 C 0
s tetNig2.chr13                  4299964 63 -  13302670 TTAGCAGCTAGCATCCCTTCCATTTCAACGGCTGTTT-TGCTGCTGAAGCACGATGCTGACATT
i tetNig2.chr13                C 0 C 0
s fr3.chr9                       3741392 63 -  13922460 TTAGCAGCAAACATCCCTTCCATTTCAACTGCTGTCT-TGCTGCTTGAGCATGATGCTGACATT
i fr3.chr9                     C 0 C 0
s takFla1.KE120500                511134 63 +    663757 TTAGCAGCAAACATCCCTTCCATTTCAACTGCTGTCT-TGCTGCTTGAGCATGATGCTGACATT
i takFla1.KE120500             C 0 C 0

a score=892700.000000
s hg38.chr8_KI270814v1_alt        123005 17 +    141812 GAAGTGAAAAACAATGT
s panTro4.chr8                  55025490 17 + 143986469 AAAGTGAAAAACAATGT
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59166079 17 + 153482349 AAAGTGAAAAACGATGT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81381698 17 - 104879549 GAAATGAAGAACAAGGT
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61693034 17 + 150158102 GAAGTGAAAAACGATGT
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366868 17 + 146850525 GAAGTGAAAAACGATGT
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287404 17 + 139301422 AAAGTGAAAAACGATGT
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33708193 17 + 155834243 GAAGTGAAAAACAAGGT
i calJac3.chr7                 I 104 C 0
s saiBol1.JH378196               4063164 17 +   9144518 GGATTAGCAAACAAGGT
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1562686 17 -   1847653 GAAATAAAAAACAAGGT
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1179977 17 -   7152218 GAAGCAAGAAACAAGGT
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                  8548 17 -     34802 GAAGCAAGAAACAAGGT
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2913317 17 -  11690531 GAAGCAAGGAACAAGGT
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10873271 17 +  33672925 GAAGCAAGAAACAAGGT
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9906320 17 +  34209287 GAAGCAAGAAACAAGGT
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3119256 17 -   3193751 GAAGCAAGGAACAAGGT
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                236912 16 -   2104649 GAAGCGAGAAACAAGG-
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39452513 17 -  55688157 GAAGCAAGAAACAAGGT
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 18509 17 +   6345240 GAAGCAAGAAACAAGGT
i triMan1.JH594766             C 0 C 0
s monDom5.chr8                 137893721 17 - 312544902 GAAGCAAAAAACCAGGT
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    319056 17 -   4230514 GAAGCAAAAAACAAGGT
i sarHar1.chr5_GL861647_random C 0 C 0
s macEug2.GL108065                 83870 17 -    187545 GAAGCAAAAAACAAGGT
i macEug2.GL108065             C 0 C 0
s ornAna1.Ultra479               3871792 17 -   6008416 GACGTGCAAAACCAGGT
i ornAna1.Ultra479             C 0 C 0
s colLiv1.KB375358               1019607 17 +   1462937 GAGGCCCAGAATAAGgt
i colLiv1.KB375358             C 0 C 0
s falChe1.KB398074               4263368 17 -   7151304 GATGCTCAGAATAAGgt
i falChe1.KB398074             C 0 C 0
s falPer1.KB391107               2215985 17 -   3101084 GATGCTCAGAATAAGgt
i falPer1.KB391107             C 0 C 0
s ficAlb2.chr1A                 24321278 17 +  74947036 GATTCCCAAAATAAGgt
i ficAlb2.chr1A                C 0 C 0
s zonAlb1.KB913045              12581981 17 +  16390125 GATGCCCAAAATAAggt
i zonAlb1.KB913045             C 0 C 0
s geoFor1.JH739914               5157705 17 -   7168866 GATGCCCAAAATAAGgt
i geoFor1.JH739914             C 0 C 0
s taeGut2.chr1A                 23692632 17 +  73657157 GATGCCCAAAATAAGGT
i taeGut2.chr1A                C 0 C 0
s pseHum1.KB221193               9789360 17 +  32995986 GATGCCCAAAATAAggt
i pseHum1.KB221193             C 0 C 0
s melUnd1.JH556589               7680030 17 -   7952740 GATGCCCAGAATAAGGT
i melUnd1.JH556589             C 0 C 0
s amaVit1.KB277496                  7461 17 -     10329 GATGCTTCAAATAAGGT
i amaVit1.KB277496             C 0 C 0
s araMac1.KE026486                  3449 17 -     24340 GATGCCCAGAATAAGGT
i araMac1.KE026486             C 0 C 0
s anaPla1.KB743807                  5950 17 +     81650 GATGCTCAAAATAAGGT
i anaPla1.KB743807             C 0 C 0
s galGal4.chr1                  24067614 17 + 195276750 GATGCTCAGAATAAGGT
i galGal4.chr1                 C 0 C 0
s melGal1.chr1                  24929331 17 + 204065131 GATGCTCAGAATAAGGT
i melGal1.chr1                 C 0 C 0
s allMis1.JH737798                 79839 17 +    106177 GATGCACAAAATAAGGT
i allMis1.JH737798             C 0 C 0
s cheMyd1.KB478633               2433643 17 +   6037886 GAAGCACAGAATAAGGT
i cheMyd1.KB478633             C 0 C 0
s chrPic2.chr2                  18523572 17 -  68452538 GATTCGCAGAATAAGGT
i chrPic2.chr2                 C 0 C 0
s pelSin1.JH208680               8419273 17 -  16024077 GATGCACAGAATAAGGT
i pelSin1.JH208680             C 0 C 0
s apaSpi1.KB929668               5961483 17 -  12308914 GATGCACAGAATAAGGT
i apaSpi1.KB929668             C 0 C 0
s anoCar2.chrUn_GL344195           44237 17 +     59083 GAAGCACAGAATAAGGT
i anoCar2.chrUn_GL344195       C 0 C 0
s tetNig2.chr13                  4300027 17 -  13302670 GATGCACAAAATAAGGT
i tetNig2.chr13                C 0 N 0
s fr3.chr9                       3741455 17 -  13922460 GATGCACAAAATAAGGT
i fr3.chr9                     C 0 N 0
s takFla1.KE120500                511197 17 +    663757 GATGCACAAAATAAGGT
i takFla1.KE120500             C 0 N 0

a score=69740.000000
s hg38.chr8_KI270814v1_alt        123022 1 +    141812 A
s panTro4.chr8                  55025507 1 + 143986469 A
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59166096 1 + 153482349 A
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81381715 1 - 104879549 A
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61693051 1 + 150158102 A
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366885 1 + 146850525 A
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287421 1 + 139301422 A
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33708210 1 + 155834243 A
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4063181 1 +   9144518 A
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1562703 1 -   1847653 A
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1179994 1 -   7152218 A
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                  8565 1 -     34802 A
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2913334 1 -  11690531 A
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10873288 1 +  33672925 A
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9906337 1 +  34209287 A
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3119273 1 -   3193751 A
i pteAle1.KB031146             C 0 C 0
s loxAfr3.scaffold_15           39452530 1 -  55688157 A
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 18526 1 +   6345240 A
i triMan1.JH594766             C 0 C 0
s monDom5.chr8                 137893738 1 - 312544902 A
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    319073 1 -   4230514 A
i sarHar1.chr5_GL861647_random C 0 C 0
s macEug2.GL108065                 83887 1 -    187545 A
i macEug2.GL108065             C 0 C 0
s ornAna1.Ultra479               3871809 1 -   6008416 A
i ornAna1.Ultra479             C 0 C 0
s colLiv1.KB375358               1019624 1 +   1462937 a
i colLiv1.KB375358             C 0 I 13
s falChe1.KB398074               4263385 1 -   7151304 a
i falChe1.KB398074             C 0 I 13
s falPer1.KB391107               2216002 1 -   3101084 a
i falPer1.KB391107             C 0 I 13
s ficAlb2.chr1A                 24321295 1 +  74947036 g
i ficAlb2.chr1A                C 0 C 0
s zonAlb1.KB913045              12581998 1 +  16390125 a
i zonAlb1.KB913045             C 0 C 0
s geoFor1.JH739914               5157722 1 -   7168866 a
i geoFor1.JH739914             C 0 C 0
s taeGut2.chr1A                 23692649 1 +  73657157 A
i taeGut2.chr1A                C 0 C 0
s pseHum1.KB221193               9789377 1 +  32995986 a
i pseHum1.KB221193             C 0 C 0
s melUnd1.JH556589               7680047 1 -   7952740 A
i melUnd1.JH556589             C 0 C 0
s amaVit1.KB277496                  7478 1 -     10329 A
i amaVit1.KB277496             C 0 C 0
s araMac1.KE026486                  3466 1 -     24340 A
i araMac1.KE026486             C 0 C 0
s anaPla1.KB743807                  5967 1 +     81650 A
i anaPla1.KB743807             C 0 C 0
s galGal4.chr1                  24067631 1 + 195276750 A
i galGal4.chr1                 C 0 N 0
s melGal1.chr1                  24929348 1 + 204065131 A
i melGal1.chr1                 C 0 C 0
s cheMyd1.KB478633               2433660 1 +   6037886 A
i cheMyd1.KB478633             C 0 N 0
s chrPic2.chr2                  18523589 1 -  68452538 A
i chrPic2.chr2                 C 0 C 0
s pelSin1.JH208680               8419290 1 -  16024077 A
i pelSin1.JH208680             C 0 C 0
s apaSpi1.KB929668               5961500 1 -  12308914 A
i apaSpi1.KB929668             C 0 C 0
s anoCar2.chrUn_GL344195           44254 1 +     59083 A
i anoCar2.chrUn_GL344195       C 0 C 0
e myoLuc2.GL429990                236928 0 -   2104649 C
e allMis1.JH737798                 79856 0 +    106177 C

a score=-7135.000000
s hg38.chr8_KI270814v1_alt        123023 1 +    141812 G
s panTro4.chr8                  55025508 1 + 143986469 G
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59166097 1 + 153482349 C
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81381716 1 - 104879549 G
i nomLeu3.chr18                C 0 I 2
s rheMac3.chr8                  61693052 1 + 150158102 G
i rheMac3.chr8                 C 0 I 2
s macFas5.chr8                  58366886 1 + 146850525 G
i macFas5.chr8                 C 0 I 2
s chlSab2.chr8                  53287422 1 + 139301422 G
i chlSab2.chr8                 C 0 I 2
s calJac3.chr7                  33708211 1 + 155834243 G
i calJac3.chr7                 C 0 I 2
s saiBol1.JH378196               4063182 1 +   9144518 T
i saiBol1.JH378196             C 0 I 2
s otoGar3.GL873762               1562704 1 -   1847653 C
i otoGar3.GL873762             C 0 I 2
s vicPac2.KB632521               1179995 1 -   7152218 T
i vicPac2.KB632521             C 0 I 2
s camFer1.KB018161                  8566 1 -     34802 T
i camFer1.KB018161             C 0 I 2
s orcOrc1.KB316915               2913335 1 -  11690531 T
i orcOrc1.KB316915             C 0 I 2
s equCab2.chr29                 10873289 1 +  33672925 G
i equCab2.chr29                C 0 I 2
s cerSim1.JH767738               9906338 1 +  34209287 C
i cerSim1.JH767738             C 0 I 2
s pteAle1.KB031146               3119274 1 -   3193751 T
i pteAle1.KB031146             C 0 I 2
s loxAfr3.scaffold_15           39452531 1 -  55688157 T
i loxAfr3.scaffold_15          C 0 I 2
s triMan1.JH594766                 18527 1 +   6345240 C
i triMan1.JH594766             C 0 I 2
s monDom5.chr8                 137893739 1 - 312544902 G
i monDom5.chr8                 C 0 I 2
s sarHar1.chr5_GL861647_random    319074 1 -   4230514 G
i sarHar1.chr5_GL861647_random C 0 I 2
s macEug2.GL108065                 83888 1 -    187545 T
i macEug2.GL108065             C 0 I 2
s ornAna1.Ultra479               3871810 1 -   6008416 G
i ornAna1.Ultra479             C 0 I 317
e myoLuc2.GL429990                236928 0 -   2104649 C
e araMac1.KE026486                  3467 0 -     24340 C
e ficAlb2.chr1A                 24321296 0 +  74947036 C
e anoCar2.chrUn_GL344195           44255 0 +     59083 C
e pseHum1.KB221193               9789378 0 +  32995986 C
e zonAlb1.KB913045              12581999 0 +  16390125 C
e colLiv1.KB375358               1019625 13 +   1462937 I
e allMis1.JH737798                 79856 0 +    106177 C
e falPer1.KB391107               2216003 13 -   3101084 I
e falChe1.KB398074               4263386 13 -   7151304 I
e geoFor1.JH739914               5157723 0 -   7168866 C
e melGal1.chr1                  24929349 0 + 204065131 C
e anaPla1.KB743807                  5968 0 +     81650 C
e amaVit1.KB277496                  7479 0 -     10329 C
e apaSpi1.KB929668               5961501 0 -  12308914 C
e chrPic2.chr2                  18523590 0 -  68452538 C
e pelSin1.JH208680               8419291 0 -  16024077 C
e melUnd1.JH556589               7680048 0 -   7952740 C
e taeGut2.chr1A                 23692650 0 +  73657157 C

a score=10764.000000
s hg38.chr8_KI270814v1_alt        123024 1 +    141812 A
s panTro4.chr8                  55025509 1 + 143986469 A
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59166098 1 + 153482349 G
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81381719 1 - 104879549 A
i nomLeu3.chr18                I 2 C 0
s rheMac3.chr8                  61693055 1 + 150158102 A
i rheMac3.chr8                 I 2 C 0
s macFas5.chr8                  58366889 1 + 146850525 A
i macFas5.chr8                 I 2 C 0
s chlSab2.chr8                  53287425 1 + 139301422 A
i chlSab2.chr8                 I 2 C 0
s calJac3.chr7                  33708214 1 + 155834243 A
i calJac3.chr7                 I 2 C 0
s saiBol1.JH378196               4063185 1 +   9144518 A
i saiBol1.JH378196             I 2 C 0
s otoGar3.GL873762               1562707 1 -   1847653 A
i otoGar3.GL873762             I 2 C 0
s vicPac2.KB632521               1179998 1 -   7152218 C
i vicPac2.KB632521             I 2 C 0
s camFer1.KB018161                  8569 1 -     34802 C
i camFer1.KB018161             I 2 C 0
s orcOrc1.KB316915               2913338 1 -  11690531 C
i orcOrc1.KB316915             I 2 C 0
s equCab2.chr29                 10873292 1 +  33672925 A
i equCab2.chr29                I 2 C 0
s cerSim1.JH767738               9906341 1 +  34209287 A
i cerSim1.JH767738             I 2 C 0
s pteAle1.KB031146               3119277 1 -   3193751 A
i pteAle1.KB031146             I 2 C 0
s loxAfr3.scaffold_15           39452534 1 -  55688157 A
i loxAfr3.scaffold_15          I 2 C 0
s triMan1.JH594766                 18530 1 +   6345240 A
i triMan1.JH594766             I 2 C 0
s monDom5.chr8                 137893742 1 - 312544902 G
i monDom5.chr8                 I 2 C 0
s sarHar1.chr5_GL861647_random    319077 1 -   4230514 G
i sarHar1.chr5_GL861647_random I 2 C 0
s macEug2.GL108065                 83891 1 -    187545 T
i macEug2.GL108065             I 2 C 0
s ficAlb2.chr1A                 24321296 1 +  74947036 a
i ficAlb2.chr1A                C 0 I 12
s zonAlb1.KB913045              12581999 1 +  16390125 a
i zonAlb1.KB913045             C 0 N 0
s geoFor1.JH739914               5157723 1 -   7168866 a
i geoFor1.JH739914             C 0 I 11
s taeGut2.chr1A                 23692650 1 +  73657157 A
i taeGut2.chr1A                C 0 I 12
s pseHum1.KB221193               9789378 1 +  32995986 a
i pseHum1.KB221193             C 0 I 12
s melUnd1.JH556589               7680048 1 -   7952740 A
i melUnd1.JH556589             C 0 N 0
s amaVit1.KB277496                  7479 1 -     10329 A
i amaVit1.KB277496             C 0 I 13
s araMac1.KE026486                  3467 1 -     24340 A
i araMac1.KE026486             C 0 N 0
s anaPla1.KB743807                  5968 1 +     81650 A
i anaPla1.KB743807             C 0 N 0
s anoCar2.chrUn_GL344195           44255 1 +     59083 A
i anoCar2.chrUn_GL344195       C 0 I 1
e myoLuc2.GL429990                236928 0 -   2104649 C
e ornAna1.Ultra479               3871811 317 -   6008416 I
e colLiv1.KB375358               1019625 13 +   1462937 I
e allMis1.JH737798                 79856 0 +    106177 C
e falPer1.KB391107               2216003 13 -   3101084 I
e falChe1.KB398074               4263386 13 -   7151304 I
e melGal1.chr1                  24929349 0 + 204065131 C
e apaSpi1.KB929668               5961501 0 -  12308914 C
e chrPic2.chr2                  18523590 0 -  68452538 C
e pelSin1.JH208680               8419291 0 -  16024077 C

a score=15048.000000
s hg38.chr8_KI270814v1_alt        123025 22 +    141812 GCAACCAATGTTA------T-T----TT------C-AAAA
s panTro4.chr8                  55025510 22 + 143986469 GCAACCAACGTTA------T-T----TT------C-AAAA
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59166099 22 + 153482349 GCAACCAATGTTA------T-T----TT------C-AAAA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81381720 22 - 104879549 TTAACCAATGTCA------T-T----TT------C-AAAA
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61693056 22 + 150158102 TCAACCATTGTTA------T-T----TT------C-AAAA
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366890 22 + 146850525 TCAACCATTGTTA------T-T----TT------C-AAAA
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287426 22 + 139301422 TCAACCATTGTTA------T-T----TT------C-AAAA
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33708215 22 + 155834243 TTAACCAATGTTA------T-T----TT------C-AAAA
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4063186 22 +   9144518 TCAACCAACTTTA------T-T----TT------C-AAAA
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1562708 22 -   1847653 TCAACTAACTTTA------T-T----TC------C-AAAA
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1179999 22 -   7152218 TCAACTAACTTTA------T-T----TA------T-AAAA
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                  8570 22 -     34802 TCAACTAACTTTA------T-T----TA------T-AAAA
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2913339 18 -  11690531 TCAACTA----TA------T-T----TA------C-AAAA
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10873293 22 +  33672925 TCAACCAACTTTA------T-T----TA------T-AAAA
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9906342 22 +  34209287 TCAACCAACTTTA------T-T----TA------C-AAAA
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3119278 22 -   3193751 TCAACTAAATTTA------T-T----TA------C-AAAA
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                236928 17 -   2104649 -----TAACTTTA------T-T----TT------C-AAAA
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39452535 22 -  55688157 TTAAACAACttta------t-t----ta------c-aaaa
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 18531 22 +   6345240 TTAAACAACTTTA------T-T----TA------C-AAAA
i triMan1.JH594766             C 0 C 0
s monDom5.chr8                 137893743 18 - 312544902 AGCACt--tttt---------t----aa------t-aaaa
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    319078 22 -   4230514 CCCACT--TCTTg------tat----aa------taaaag
i sarHar1.chr5_GL861647_random C 0 C 0
s macEug2.GL108065                 83892 17 -    187545 AC------TCTTG------TGT----AA------T-AAAG
i macEug2.GL108065             C 0 C 0
s colLiv1.KB375358               1019638 22 +   1462937 gttaagGAAATTC------T-T----TC------A-AGAA
i colLiv1.KB375358             I 13 C 0
s falChe1.KB398074               4263399 22 -   7151304 gttaagAAAGTTT------G-T----TC------A-GAAA
i falChe1.KB398074             I 13 C 0
s falPer1.KB391107               2216016 22 -   3101084 gttaagAAAGTTT------G-T----TC------A-GAAA
i falPer1.KB391107             I 13 C 0
s ficAlb2.chr1A                 24321309 22 +  74947036 gttaatGAATTGC------T-T----TC------C-AAAA
i ficAlb2.chr1A                I 12 C 0
s geoFor1.JH739914               5157735 22 -   7168866 gttaGTGAAGTGC------T-T----TC------C-AAAA
i geoFor1.JH739914             I 11 C 0
s taeGut2.chr1A                 23692663 22 +  73657157 TTTAATAAAGTGC------T-T----TC------C-AAAA
i taeGut2.chr1A                I 12 C 0
s pseHum1.KB221193               9789391 22 +  32995986 gttattGACGTGC------T-T----TC------C-AAAA
i pseHum1.KB221193             I 12 C 0
s amaVit1.KB277496                  7493 24 -     10329 ----GTAAGGCTCCTCCTGT-T----CC------C-CAAA
i amaVit1.KB277496             I 13 C 0
s melGal1.chr1                  24929349 28 + 204065131 CATTTTGAGATTT------G-T----TAGGAAAGA-AAAA
i melGal1.chr1                 C 0 C 0
s allMis1.JH737798                 79856 17 +    106177 -----AACTTTAC------T-T----TC------A-GAAA
i allMis1.JH737798             C 0 C 0
s chrPic2.chr2                  18523590 17 -  68452538 ----ACTGcttat------t-t----tt------a-gaa-
i chrPic2.chr2                 C 0 C 0
s pelSin1.JH208680               8419291 17 -  16024077 ----ACTGCTTAT------T-T----TC------A-GAA-
i pelSin1.JH208680             C 0 C 0
s apaSpi1.KB929668               5961501 17 -  12308914 ----ACTGCTTAT------T-T----Tc------a-gaa-
i apaSpi1.KB929668             C 0 N 0
s anoCar2.chrUn_GL344195           44257 22 +     59083 ---GCGCACCTTT------T-TAACGTC------A-GAA-
i anoCar2.chrUn_GL344195       I 1 C 0
e ornAna1.Ultra479               3871811 317 -   6008416 I

a score=65219.000000
s hg38.chr8_KI270814v1_alt        123047 13 +    141812 TATT--------TGAAATCCA
s panTro4.chr8                  55025532 13 + 143986469 TATT--------TGAAATCCA
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59166121 13 + 153482349 TATT--------TGAAATCCA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81381742 13 - 104879549 TATT--------TGAAATCCA
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61693078 13 + 150158102 TATT--------TGAAATCCA
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366912 13 + 146850525 TATT--------TGAAATCCA
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287448 13 + 139301422 TATT--------TGAAATCCA
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33708237 13 + 155834243 TGTT--------TGAGATCCA
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4063208 13 +   9144518 TATT--------TGAAATGCA
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1562730 13 -   1847653 TATT--------TGAAATGCA
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1180021 13 -   7152218 TATT--------CGAAATACA
i vicPac2.KB632521             C 0 I 633
s camFer1.KB018161                  8592 13 -     34802 TATT--------TGAAATACA
i camFer1.KB018161             C 0 I 629
s orcOrc1.KB316915               2913357 13 -  11690531 TATT--------TGCAATACA
i orcOrc1.KB316915             C 0 I 2
s equCab2.chr29                 10873315 11 +  33672925 CATT--------TGAAATG--
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9906364 11 +  34209287 TATT--------TGAAATA--
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3119300 11 -   3193751 TATT--------TGAAATA--
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                236945 11 -   2104649 TATT--------TGAAATT--
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39452557 13 -  55688157 tatt--------tgaaatata
i loxAfr3.scaffold_15          C 0 I 2
s triMan1.JH594766                 18553 13 +   6345240 TATT--------TGAAATATG
i triMan1.JH594766             C 0 C 0
s monDom5.chr8                 137893761 21 - 312544902 tattttataaGCTAAGATGTA
i monDom5.chr8                 C 0 I 7
s sarHar1.chr5_GL861647_random    319100 21 -   4230514 tattttacaaactaaAATGTA
i sarHar1.chr5_GL861647_random C 0 I 7
s macEug2.GL108065                 83909 21 -    187545 TATTTTATGAGCTAAAATGTG
i macEug2.GL108065             C 0 I 8
s chrPic2.chr2                  18523607  3 -  68452538 --------------aaa----
i chrPic2.chr2                 C 0 C 0
s pelSin1.JH208680               8419308  1 -  16024077 ----------------A----
i pelSin1.JH208680             C 0 C 0
s anoCar2.chrUn_GL344195           44279  2 +     59083 ---------------AA----
i anoCar2.chrUn_GL344195       C 0 C 0
e ornAna1.Ultra479               3871811 317 -   6008416 I
e ficAlb2.chr1A                 24321331  0 +  74947036 C
e pseHum1.KB221193               9789413  0 +  32995986 C
e colLiv1.KB375358               1019660  0 +   1462937 C
e allMis1.JH737798                 79873  0 +    106177 C
e falPer1.KB391107               2216038  0 -   3101084 C
e falChe1.KB398074               4263421  0 -   7151304 C
e geoFor1.JH739914               5157757  0 -   7168866 C
e melGal1.chr1                  24929377  0 + 204065131 C
e amaVit1.KB277496                  7517  0 -     10329 C
e taeGut2.chr1A                 23692685  0 +  73657157 C

a score=-18660.000000
s hg38.chr8_KI270814v1_alt        123060 4 +    141812 CTTG
s panTro4.chr8                  55025545 4 + 143986469 CTTG
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59166134 4 + 153482349 CTTG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81381755 4 - 104879549 TTTG
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61693091 4 + 150158102 CTTG
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366925 4 + 146850525 CTTG
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287461 4 + 139301422 CTTG
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33708250 4 + 155834243 CTTG
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4063221 4 +   9144518 TTTG
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1562743 4 -   1847653 TTTG
i otoGar3.GL873762             C 0 C 0
s orcOrc1.KB316915               2913372 4 -  11690531 GTTG
i orcOrc1.KB316915             I 2 C 0
s equCab2.chr29                 10873326 4 +  33672925 CACA
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9906375 4 +  34209287 TGTT
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3119311 4 -   3193751 TGTG
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                236956 4 -   2104649 CTTG
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39452572 2 -  55688157 --ta
i loxAfr3.scaffold_15          I 2 C 0
s triMan1.JH594766                 18566 1 +   6345240 ---A
i triMan1.JH594766             C 0 C 0
s monDom5.chr8                 137893789 4 - 312544902 GTTT
i monDom5.chr8                 I 7 C 0
s sarHar1.chr5_GL861647_random    319128 4 -   4230514 ATAA
i sarHar1.chr5_GL861647_random I 7 C 0
s macEug2.GL108065                 83938 4 -    187545 GTAA
i macEug2.GL108065             I 8 C 0
s colLiv1.KB375358               1019660 4 +   1462937 actg
i colLiv1.KB375358             C 0 I 6
s falChe1.KB398074               4263421 4 -   7151304 GTTG
i falChe1.KB398074             C 0 C 0
s falPer1.KB391107               2216038 4 -   3101084 GTTG
i falPer1.KB391107             C 0 C 0
s ficAlb2.chr1A                 24321331 4 +  74947036 GTTG
i ficAlb2.chr1A                C 0 C 0
s geoFor1.JH739914               5157757 4 -   7168866 gttg
i geoFor1.JH739914             C 0 C 0
s taeGut2.chr1A                 23692685 4 +  73657157 GTTG
i taeGut2.chr1A                C 0 C 0
s pseHum1.KB221193               9789413 4 +  32995986 GTTG
i pseHum1.KB221193             C 0 N 0
s amaVit1.KB277496                  7517 4 -     10329 TTTG
i amaVit1.KB277496             C 0 I 13
s melGal1.chr1                  24929377 4 + 204065131 GTTC
i melGal1.chr1                 C 0 I 7
s allMis1.JH737798                 79873 4 +    106177 AACA
i allMis1.JH737798             C 0 I 10
s chrPic2.chr2                  18523610 2 -  68452538 ga--
i chrPic2.chr2                 C 0 C 0
s pelSin1.JH208680               8419309 2 -  16024077 GA--
i pelSin1.JH208680             C 0 C 0
s anoCar2.chrUn_GL344195           44281 4 +     59083 GTAG
i anoCar2.chrUn_GL344195       C 0 I 1
e vicPac2.KB632521               1180034 633 -   7152218 I
e camFer1.KB018161                  8605 629 -     34802 I
e ornAna1.Ultra479               3871811 317 -   6008416 I

a score=26291.000000
s hg38.chr8_KI270814v1_alt        123064 3 +    141812 TTT-
s panTro4.chr8                  55025549 3 + 143986469 TTT-
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59166138 3 + 153482349 TTT-
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81381759 3 - 104879549 TTT-
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61693095 3 + 150158102 TTT-
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366929 3 + 146850525 TTT-
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287465 3 + 139301422 TTT-
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33708254 3 + 155834243 TTT-
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4063225 2 +   9144518 TT--
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1562747 3 -   1847653 TTT-
i otoGar3.GL873762             C 0 C 0
s orcOrc1.KB316915               2913376 3 -  11690531 TTT-
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10873330 3 +  33672925 TTT-
i equCab2.chr29                C 0 I 2
s cerSim1.JH767738               9906379 3 +  34209287 TTT-
i cerSim1.JH767738             C 0 I 677
s pteAle1.KB031146               3119315 3 -   3193751 TTT-
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                236960 3 -   2104649 TTT-
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39452574 3 -  55688157 ttt-
i loxAfr3.scaffold_15          C 0 I 2
s triMan1.JH594766                 18567 3 +   6345240 TTT-
i triMan1.JH594766             C 0 I 2
s monDom5.chr8                 137893793 3 - 312544902 TTT-
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    319132 3 -   4230514 Tgt-
i sarHar1.chr5_GL861647_random C 0 C 0
s macEug2.GL108065                 83942 3 -    187545 TGT-
i macEug2.GL108065             C 0 C 0
s anoCar2.chrUn_GL344195           44286 3 +     59083 -CTA
i anoCar2.chrUn_GL344195       I 1 C 0
e vicPac2.KB632521               1180034 633 -   7152218 I
e camFer1.KB018161                  8605 629 -     34802 I
e ornAna1.Ultra479               3871811 317 -   6008416 I
e ficAlb2.chr1A                 24321335 0 +  74947036 C
e colLiv1.KB375358               1019664 6 +   1462937 I
e allMis1.JH737798                 79877 10 +    106177 I
e falPer1.KB391107               2216042 0 -   3101084 C
e falChe1.KB398074               4263425 0 -   7151304 C
e geoFor1.JH739914               5157761 0 -   7168866 C
e melGal1.chr1                  24929381 7 + 204065131 I
e amaVit1.KB277496                  7521 13 -     10329 I
e chrPic2.chr2                  18523612 0 -  68452538 C
e pelSin1.JH208680               8419311 0 -  16024077 C
e taeGut2.chr1A                 23692689 0 +  73657157 C

a score=-13141.000000
s hg38.chr8_KI270814v1_alt        123067 1 +    141812 -T
s panTro4.chr8                  55025552 1 + 143986469 -T
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59166141 1 + 153482349 -T
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81381762 1 - 104879549 -T
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61693098 1 + 150158102 -T
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366932 1 + 146850525 -T
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287468 1 + 139301422 -T
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33708257 1 + 155834243 -T
i calJac3.chr7                 C 0 C 0
s otoGar3.GL873762               1562750 1 -   1847653 -T
i otoGar3.GL873762             C 0 C 0
s orcOrc1.KB316915               2913379 1 -  11690531 -T
i orcOrc1.KB316915             C 0 I 650
s equCab2.chr29                 10873335 1 +  33672925 -T
i equCab2.chr29                I 2 I 662
s pteAle1.KB031146               3119318 1 -   3193751 -T
i pteAle1.KB031146             C 0 I 671
s myoLuc2.GL429990                236963 1 -   2104649 -T
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39452579 1 -  55688157 -t
i loxAfr3.scaffold_15          I 2 C 0
s triMan1.JH594766                 18572 1 +   6345240 -T
i triMan1.JH594766             I 2 C 0
s monDom5.chr8                 137893796 1 - 312544902 -T
i monDom5.chr8                 C 0 I 1
s sarHar1.chr5_GL861647_random    319135 1 -   4230514 -t
i sarHar1.chr5_GL861647_random C 0 I 1
s macEug2.GL108065                 83945 1 -    187545 -C
i macEug2.GL108065             C 0 I 1
s chrPic2.chr2                  18523612 1 -  68452538 g-
i chrPic2.chr2                 C 0 C 0
s pelSin1.JH208680               8419311 1 -  16024077 G-
i pelSin1.JH208680             C 0 C 0
s anoCar2.chrUn_GL344195           44289 1 +     59083 C-
i anoCar2.chrUn_GL344195       C 0 C 0
e vicPac2.KB632521               1180034 633 -   7152218 I
e camFer1.KB018161                  8605 629 -     34802 I
e ornAna1.Ultra479               3871811 317 -   6008416 I
e ficAlb2.chr1A                 24321335 0 +  74947036 C
e colLiv1.KB375358               1019664 6 +   1462937 I
e allMis1.JH737798                 79877 10 +    106177 I
e falPer1.KB391107               2216042 0 -   3101084 C
e falChe1.KB398074               4263425 0 -   7151304 C
e geoFor1.JH739914               5157761 0 -   7168866 C
e melGal1.chr1                  24929381 7 + 204065131 I
e amaVit1.KB277496                  7521 13 -     10329 I
e taeGut2.chr1A                 23692689 0 +  73657157 C
e cerSim1.JH767738               9906382 677 +  34209287 I
e saiBol1.JH378196               4063227 0 +   9144518 C

a score=-17294.000000
s hg38.chr8_KI270814v1_alt        123068 3 +    141812 AAC
s panTro4.chr8                  55025553 3 + 143986469 AAC
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59166142 3 + 153482349 AAC
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81381763 3 - 104879549 AAC
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61693099 3 + 150158102 AAC
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366933 3 + 146850525 AAC
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287469 3 + 139301422 AAC
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33708258 3 + 155834243 AAC
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4063227 2 +   9144518 -GC
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1562751 3 -   1847653 AAT
i otoGar3.GL873762             C 0 C 0
s myoLuc2.GL429990                236964 3 -   2104649 TAC
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39452580 3 -  55688157 aaC
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 18573 3 +   6345240 AAT
i triMan1.JH594766             C 0 C 0
s monDom5.chr8                 137893798 1 - 312544902 G--
i monDom5.chr8                 I 1 C 0
s sarHar1.chr5_GL861647_random    319137 1 -   4230514 a--
i sarHar1.chr5_GL861647_random I 1 C 0
s macEug2.GL108065                 83947 1 -    187545 A--
i macEug2.GL108065             I 1 C 0
s colLiv1.KB375358               1019670 1 +   1462937 --t
i colLiv1.KB375358             I 6 C 0
s falChe1.KB398074               4263425 1 -   7151304 --C
i falChe1.KB398074             C 0 C 0
s falPer1.KB391107               2216042 1 -   3101084 --C
i falPer1.KB391107             C 0 C 0
s ficAlb2.chr1A                 24321335 1 +  74947036 --C
i ficAlb2.chr1A                C 0 C 0
s geoFor1.JH739914               5157761 1 -   7168866 --t
i geoFor1.JH739914             C 0 C 0
s taeGut2.chr1A                 23692689 1 +  73657157 --C
i taeGut2.chr1A                C 0 C 0
s amaVit1.KB277496                  7534 1 -     10329 --T
i amaVit1.KB277496             I 13 C 0
s melGal1.chr1                  24929388 1 + 204065131 --A
i melGal1.chr1                 I 7 C 0
s allMis1.JH737798                 79887 1 +    106177 --C
i allMis1.JH737798             I 10 C 0
s chrPic2.chr2                  18523613 3 -  68452538 aac
i chrPic2.chr2                 C 0 C 0
s pelSin1.JH208680               8419312 3 -  16024077 AAC
i pelSin1.JH208680             C 0 C 0
s anoCar2.chrUn_GL344195           44290 3 +     59083 AAC
i anoCar2.chrUn_GL344195       C 0 C 0
e vicPac2.KB632521               1180034 633 -   7152218 I
e camFer1.KB018161                  8605 629 -     34802 I
e ornAna1.Ultra479               3871811 317 -   6008416 I
e equCab2.chr29                 10873336 662 +  33672925 I
e pteAle1.KB031146               3119319 671 -   3193751 I
e cerSim1.JH767738               9906382 677 +  34209287 I
e orcOrc1.KB316915               2913380 650 -  11690531 I

a score=25275.000000
s hg38.chr8_KI270814v1_alt        123071 1 +    141812 A
s panTro4.chr8                  55025556 1 + 143986469 A
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59166145 1 + 153482349 A
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81381766 1 - 104879549 A
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61693102 1 + 150158102 A
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366936 1 + 146850525 A
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287472 1 + 139301422 A
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33708261 1 + 155834243 A
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4063229 1 +   9144518 A
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1562754 1 -   1847653 A
i otoGar3.GL873762             C 0 C 0
s pteAle1.KB031146               3119990 1 -   3193751 A
i pteAle1.KB031146             I 671 C 0
s loxAfr3.scaffold_15           39452583 1 -  55688157 A
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 18576 1 +   6345240 A
i triMan1.JH594766             C 0 C 0
s monDom5.chr8                 137893799 1 - 312544902 G
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    319138 1 -   4230514 a
i sarHar1.chr5_GL861647_random C 0 C 0
s macEug2.GL108065                 83948 1 -    187545 A
i macEug2.GL108065             C 0 C 0
s colLiv1.KB375358               1019671 1 +   1462937 a
i colLiv1.KB375358             C 0 C 0
s falChe1.KB398074               4263426 1 -   7151304 A
i falChe1.KB398074             C 0 C 0
s falPer1.KB391107               2216043 1 -   3101084 A
i falPer1.KB391107             C 0 C 0
s ficAlb2.chr1A                 24321336 1 +  74947036 A
i ficAlb2.chr1A                C 0 C 0
s geoFor1.JH739914               5157762 1 -   7168866 g
i geoFor1.JH739914             C 0 C 0
s taeGut2.chr1A                 23692690 1 +  73657157 A
i taeGut2.chr1A                C 0 C 0
s amaVit1.KB277496                  7535 1 -     10329 G
i amaVit1.KB277496             C 0 C 0
s melGal1.chr1                  24929389 1 + 204065131 A
i melGal1.chr1                 C 0 C 0
s allMis1.JH737798                 79888 1 +    106177 A
i allMis1.JH737798             C 0 C 0
s chrPic2.chr2                  18523616 1 -  68452538 a
i chrPic2.chr2                 C 0 C 0
s pelSin1.JH208680               8419315 1 -  16024077 A
i pelSin1.JH208680             C 0 C 0
s anoCar2.chrUn_GL344195           44293 1 +     59083 A
i anoCar2.chrUn_GL344195       C 0 C 0
e myoLuc2.GL429990                236967 0 -   2104649 C
e vicPac2.KB632521               1180034 633 -   7152218 I
e camFer1.KB018161                  8605 629 -     34802 I
e ornAna1.Ultra479               3871811 317 -   6008416 I
e equCab2.chr29                 10873336 662 +  33672925 I
e cerSim1.JH767738               9906382 677 +  34209287 I
e orcOrc1.KB316915               2913380 650 -  11690531 I

a score=17318.000000
s hg38.chr8_KI270814v1_alt        123072 1 +    141812 T
s panTro4.chr8                  55025557 1 + 143986469 T
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59166146 1 + 153482349 T
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81381767 1 - 104879549 T
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61693103 1 + 150158102 T
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366937 1 + 146850525 T
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287473 1 + 139301422 T
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33708262 1 + 155834243 T
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4063230 1 +   9144518 T
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1562755 1 -   1847653 T
i otoGar3.GL873762             C 0 C 0
s equCab2.chr29                 10873998 1 +  33672925 T
i equCab2.chr29                I 662 C 0
s cerSim1.JH767738               9907059 1 +  34209287 T
i cerSim1.JH767738             I 677 C 0
s pteAle1.KB031146               3119991 1 -   3193751 T
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                236967 1 -   2104649 T
i myoLuc2.GL429990             C 0 I 628
s loxAfr3.scaffold_15           39452584 1 -  55688157 T
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 18577 1 +   6345240 T
i triMan1.JH594766             C 0 C 0
s monDom5.chr8                 137893800 1 - 312544902 G
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    319139 1 -   4230514 t
i sarHar1.chr5_GL861647_random C 0 C 0
s macEug2.GL108065                 83949 1 -    187545 T
i macEug2.GL108065             C 0 C 0
s colLiv1.KB375358               1019672 1 +   1462937 t
i colLiv1.KB375358             C 0 C 0
s falChe1.KB398074               4263427 1 -   7151304 T
i falChe1.KB398074             C 0 C 0
s falPer1.KB391107               2216044 1 -   3101084 T
i falPer1.KB391107             C 0 C 0
s ficAlb2.chr1A                 24321337 1 +  74947036 T
i ficAlb2.chr1A                C 0 C 0
s geoFor1.JH739914               5157763 1 -   7168866 t
i geoFor1.JH739914             C 0 C 0
s taeGut2.chr1A                 23692691 1 +  73657157 T
i taeGut2.chr1A                C 0 C 0
s amaVit1.KB277496                  7536 1 -     10329 T
i amaVit1.KB277496             C 0 C 0
s melGal1.chr1                  24929390 1 + 204065131 G
i melGal1.chr1                 C 0 C 0
s allMis1.JH737798                 79889 1 +    106177 T
i allMis1.JH737798             C 0 C 0
s chrPic2.chr2                  18523617 1 -  68452538 a
i chrPic2.chr2                 C 0 C 0
s pelSin1.JH208680               8419316 1 -  16024077 A
i pelSin1.JH208680             C 0 C 0
e vicPac2.KB632521               1180034 633 -   7152218 I
e camFer1.KB018161                  8605 629 -     34802 I
e ornAna1.Ultra479               3871811 317 -   6008416 I
e anoCar2.chrUn_GL344195           44294 0 +     59083 C
e orcOrc1.KB316915               2913380 650 -  11690531 I

a score=26996.000000
s hg38.chr8_KI270814v1_alt        123073 1 +    141812 T
s panTro4.chr8                  55025558 1 + 143986469 T
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59166147 1 + 153482349 T
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81381768 1 - 104879549 T
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61693104 1 + 150158102 T
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366938 1 + 146850525 T
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287474 1 + 139301422 T
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33708263 1 + 155834243 T
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4063231 1 +   9144518 T
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1562756 1 -   1847653 T
i otoGar3.GL873762             C 0 C 0
s orcOrc1.KB316915               2914030 1 -  11690531 T
i orcOrc1.KB316915             I 650 C 0
s equCab2.chr29                 10873999 1 +  33672925 T
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9907060 1 +  34209287 T
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3119992 1 -   3193751 T
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                237596 1 -   2104649 T
i myoLuc2.GL429990             I 628 C 0
s loxAfr3.scaffold_15           39452585 1 -  55688157 C
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 18578 1 +   6345240 T
i triMan1.JH594766             C 0 C 0
s monDom5.chr8                 137893801 1 - 312544902 T
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    319140 1 -   4230514 t
i sarHar1.chr5_GL861647_random C 0 C 0
s macEug2.GL108065                 83950 1 -    187545 T
i macEug2.GL108065             C 0 C 0
s colLiv1.KB375358               1019673 1 +   1462937 t
i colLiv1.KB375358             C 0 I 6
s falChe1.KB398074               4263428 1 -   7151304 T
i falChe1.KB398074             C 0 I 6
s falPer1.KB391107               2216045 1 -   3101084 T
i falPer1.KB391107             C 0 I 6
s ficAlb2.chr1A                 24321338 1 +  74947036 T
i ficAlb2.chr1A                C 0 N 0
s geoFor1.JH739914               5157764 1 -   7168866 t
i geoFor1.JH739914             C 0 I 6
s taeGut2.chr1A                 23692692 1 +  73657157 T
i taeGut2.chr1A                C 0 I 6
s amaVit1.KB277496                  7537 1 -     10329 T
i amaVit1.KB277496             C 0 I 5
s melGal1.chr1                  24929391 1 + 204065131 T
i melGal1.chr1                 C 0 I 6
s allMis1.JH737798                 79890 1 +    106177 T
i allMis1.JH737798             C 0 C 0
s chrPic2.chr2                  18523618 1 -  68452538 g
i chrPic2.chr2                 C 0 C 0
s pelSin1.JH208680               8419317 1 -  16024077 G
i pelSin1.JH208680             C 0 C 0
e vicPac2.KB632521               1180034 633 -   7152218 I
e camFer1.KB018161                  8605 629 -     34802 I
e ornAna1.Ultra479               3871811 317 -   6008416 I
e anoCar2.chrUn_GL344195           44294 0 +     59083 C

a score=20138.000000
s hg38.chr8_KI270814v1_alt        123074 2 +    141812 GA
s panTro4.chr8                  55025559 2 + 143986469 GA
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59166148 2 + 153482349 GA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81381769 2 - 104879549 AA
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61693105 2 + 150158102 GA
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366939 2 + 146850525 GA
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287475 2 + 139301422 GA
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33708264 2 + 155834243 AA
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4063232 2 +   9144518 GA
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1562757 2 -   1847653 GA
i otoGar3.GL873762             C 0 C 0
s orcOrc1.KB316915               2914031 2 -  11690531 GA
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10874000 2 +  33672925 GA
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9907061 2 +  34209287 GA
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3119993 2 -   3193751 GA
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                237597 2 -   2104649 GA
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39452586 2 -  55688157 GA
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 18579 2 +   6345240 GA
i triMan1.JH594766             C 0 C 0
s monDom5.chr8                 137893802 2 - 312544902 CA
i monDom5.chr8                 C 0 C 0
s macEug2.GL108065                 83951 2 -    187545 CC
i macEug2.GL108065             C 0 C 0
s melGal1.chr1                  24929398 2 + 204065131 GA
i melGal1.chr1                 I 6 C 0
e vicPac2.KB632521               1180034 633 -   7152218 I
e camFer1.KB018161                  8605 629 -     34802 I
e ornAna1.Ultra479               3871811 317 -   6008416 I
e anoCar2.chrUn_GL344195           44294 0 +     59083 C
e colLiv1.KB375358               1019674 6 +   1462937 I
e allMis1.JH737798                 79891 0 +    106177 C
e falPer1.KB391107               2216046 6 -   3101084 I
e falChe1.KB398074               4263429 6 -   7151304 I
e geoFor1.JH739914               5157765 6 -   7168866 I
e sarHar1.chr5_GL861647_random    319141 0 -   4230514 C
e amaVit1.KB277496                  7538 5 -     10329 I
e chrPic2.chr2                  18523619 0 -  68452538 C
e pelSin1.JH208680               8419318 0 -  16024077 C
e taeGut2.chr1A                 23692693 6 +  73657157 I

a score=-584255.000000
s hg38.chr8_KI270814v1_alt        123076 21 +    141812 C--ATATGTAA---GGGTCAGT--------TTTT---------------
s panTro4.chr8                  55025561 21 + 143986469 C--ATATGTAA---GGGTCAGT--------TTTT---------------
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59166150 21 + 153482349 C--ATATGTAA---GGGTCAGT--------TTTT---------------
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81381771 16 - 104879549 C--ATATGTAA--------ATT--------GTTT---------------
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61693107 21 + 150158102 C--ATATGTAA---GGGTCAAT--------TTTT---------------
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366941 21 + 146850525 C--ATATGTAA---GGGTCAAT--------TTTT---------------
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287477 21 + 139301422 C--ATATGTAA---GGGTCAAT--------TTTT---------------
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33708266 12 + 155834243 C--ATATGTG--------------------TTTT---------------
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4063234 21 +   9144518 C--TGATGTAT---GGGTCAGT--------TTTT---------------
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1562759 23 -   1847653 CATATATGTAA---GGGTCAGT--------GGTT---------------
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1180667 21 -   7152218 C--ACATAGTA---GGAGAAAT--------TTTA---------------
i vicPac2.KB632521             I 633 C 0
s camFer1.KB018161                  9234 21 -     34802 C--ACATAGTA---GGAGCAAT--------TTTA---------------
i camFer1.KB018161             I 629 C 0
s orcOrc1.KB316915               2914033 20 -  11690531 C--ATA-AATG---GGGTCAGT--------TTTA---------------
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10874002 20 +  33672925 C--ATA-GGTA---GGGTCAGT--------TTTA---------------
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9907063 20 +  34209287 C--ATA-GGTA---GGGTCAGT--------TTTA---------------
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3119995 14 -   3193751 C--AC----------AGTCAAC--------TTTA---------------
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                237599 20 -   2104649 C--ACG-GGTA---GGGTCAAT--------TTTA---------------
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39452588 20 -  55688157 ------TGTAAGTAGGGTCAGT--------TTTA---------------
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 18581 20 +   6345240 ------TGTAAGTAGGGTCAGT--------TTTA---------------
i triMan1.JH594766             C 0 C 0
s monDom5.chr8                 137893804 16 - 312544902 ------------------CATATTTTATAGTTTA---------------
i monDom5.chr8                 C 0 C 0
s macEug2.GL108065                 83953  8 -    187545 ------------------CATA--------TTCA---------------
i macEug2.GL108065             C 0 C 0
s colLiv1.KB375358               1019680 21 +   1462937 ---------------caaggtt--------ggtgtgttct-----tttt
i colLiv1.KB375358             I 6 I 4
s falChe1.KB398074               4263435 17 -   7151304 -------------------TCT--------cttgtagggt-----tttt
i falChe1.KB398074             I 6 I 7
s falPer1.KB391107               2216052 17 -   3101084 -------------------TCt--------cttgtagggt-----tttt
i falPer1.KB391107             I 6 I 7
s geoFor1.JH739914               5157771 17 -   7168866 -------------------ttt--------cttaaagttt-----tgtt
i geoFor1.JH739914             I 6 N 0
s taeGut2.chr1A                 23692699 17 +  73657157 -------------------TTT--------CTTAAAGgtt-----tgtt
i taeGut2.chr1A                I 6 I 5
s amaVit1.KB277496                  7543 15 -     10329 ------------------------------AACAGAGGTG----ATGTC
i amaVit1.KB277496             I 5 I 8
s melGal1.chr1                  24929400 21 + 204065131 ---------------TATTTTT--------ATTGAAGACT-----TTTT
i melGal1.chr1                 C 0 I 4
s allMis1.JH737798                 79891 21 +    106177 ------------------ATAT--------ATTTTAAGTTC--AGTTTT
i allMis1.JH737798             C 0 I 1
s chrPic2.chr2                  18523619 23 -  68452538 ------------------aaaa--------attGTAGATTTCAACTTCT
i chrPic2.chr2                 C 0 C 0
s pelSin1.JH208680               8419318 23 -  16024077 ------------------AAAA--------AGTGTAGATTTCAACTTCT
i pelSin1.JH208680             C 0 C 0
s anoCar2.chrUn_GL344195           44294  8 +     59083 ------------------------------------GCTT-----TGTT
i anoCar2.chrUn_GL344195       C 0 I 3
e ornAna1.Ultra479               3871811 317 -   6008416 I
e sarHar1.chr5_GL861647_random    319141  0 -   4230514 C

a score=-90460.000000
s hg38.chr8_KI270814v1_alt        123097 1 +    141812 -G
s panTro4.chr8                  55025582 1 + 143986469 -C
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59166171 1 + 153482349 -C
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81381787 1 - 104879549 -T
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61693128 1 + 150158102 -C
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366962 1 + 146850525 -C
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287498 1 + 139301422 -C
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33708278 1 + 155834243 -T
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4063255 1 +   9144518 -C
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1562782 1 -   1847653 -C
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1180688 1 -   7152218 -T
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                  9255 1 -     34802 -T
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2914053 1 -  11690531 -C
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10874022 1 +  33672925 -C
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9907083 1 +  34209287 -C
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3120009 1 -   3193751 -C
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                237619 1 -   2104649 -C
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39452608 1 -  55688157 -C
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 18601 1 +   6345240 -T
i triMan1.JH594766             C 0 C 0
s monDom5.chr8                 137893820 1 - 312544902 -C
i monDom5.chr8                 C 0 C 0
s macEug2.GL108065                 83961 1 -    187545 -T
i macEug2.GL108065             C 0 C 0
s colLiv1.KB375358               1019705 1 +   1462937 t-
i colLiv1.KB375358             I 4 C 0
s falChe1.KB398074               4263459 1 -   7151304 g-
i falChe1.KB398074             I 7 C 0
s falPer1.KB391107               2216076 1 -   3101084 g-
i falPer1.KB391107             I 7 C 0
s taeGut2.chr1A                 23692721 1 +  73657157 g-
i taeGut2.chr1A                I 5 C 0
s amaVit1.KB277496                  7566 1 -     10329 g-
i amaVit1.KB277496             I 8 C 0
s melGal1.chr1                  24929425 1 + 204065131 G-
i melGal1.chr1                 I 4 C 0
s allMis1.JH737798                 79913 1 +    106177 G-
i allMis1.JH737798             I 1 I 2359
s chrPic2.chr2                  18523642 1 -  68452538 A-
i chrPic2.chr2                 C 0 C 0
s pelSin1.JH208680               8419341 1 -  16024077 A-
i pelSin1.JH208680             C 0 C 0
s anoCar2.chrUn_GL344195           44305 1 +     59083 G-
i anoCar2.chrUn_GL344195       I 3 C 0
e ornAna1.Ultra479               3871811 317 -   6008416 I
e sarHar1.chr5_GL861647_random    319141 0 -   4230514 C

a score=-21784.000000
s hg38.chr8_KI270814v1_alt        123098 7 +    141812 C--TATTTG
s panTro4.chr8                  55025583 7 + 143986469 C--TATTTG
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59166172 7 + 153482349 C--TATTTG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81381788 7 - 104879549 A--TATTTG
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61693129 7 + 150158102 C--TATTTG
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366963 7 + 146850525 C--TATTTG
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287499 7 + 139301422 G--TATTTG
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33708279 7 + 155834243 A--TATTTA
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4063256 7 +   9144518 G--TGTTTG
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1562783 7 -   1847653 A--TATTTG
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1180689 7 -   7152218 A--TATTTG
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                  9256 7 -     34802 G--TATTTG
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2914054 7 -  11690531 A--TATTTG
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10874023 7 +  33672925 A--TATTTG
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9907084 7 +  34209287 A--TATTTG
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3120010 7 -   3193751 A--TCTTGA
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                237620 7 -   2104649 A--TATTTG
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39452609 6 -  55688157 A--TATTT-
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 18602 7 +   6345240 A--TATTCG
i triMan1.JH594766             C 0 C 0
s monDom5.chr8                 137893821 6 - 312544902 A--TATTC-
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    319141 5 -   4230514 ---tattt-
i sarHar1.chr5_GL861647_random C 0 C 0
s macEug2.GL108065                 83962 6 -    187545 A--TATTC-
i macEug2.GL108065             C 0 C 0
s colLiv1.KB375358               1019706 5 +   1462937 ---atttt-
i colLiv1.KB375358             C 0 C 0
s falChe1.KB398074               4263460 5 -   7151304 ---atttt-
i falChe1.KB398074             C 0 C 0
s falPer1.KB391107               2216077 5 -   3101084 ---atttt-
i falPer1.KB391107             C 0 C 0
s taeGut2.chr1A                 23692722 5 +  73657157 ---ttttt-
i taeGut2.chr1A                C 0 n 0
s amaVit1.KB277496                  7567 5 -     10329 ---ctttc-
i amaVit1.KB277496             C 0 I 2
s melGal1.chr1                  24929426 5 + 204065131 ---TTTCT-
i melGal1.chr1                 C 0 I 8
s chrPic2.chr2                  18523643 4 -  68452538 ----GTTt-
i chrPic2.chr2                 C 0 I 4
s pelSin1.JH208680               8419342 4 -  16024077 ----GTTT-
i pelSin1.JH208680             C 0 I 3
s anoCar2.chrUn_GL344195           44306 7 +     59083 -TACTTTT-
i anoCar2.chrUn_GL344195       C 0 I 1
e ornAna1.Ultra479               3871811 317 -   6008416 I
e allMis1.JH737798                 79914 2359 +    106177 I

a score=77416.000000
s hg38.chr8_KI270814v1_alt        123105 8 +    141812 GAAGCTTA
s panTro4.chr8                  55025590 8 + 143986469 GAAGCTTA
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59166179 8 + 153482349 GAAGCTTA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81381795 8 - 104879549 GAAGCTCA
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61693136 8 + 150158102 GAAGCTTA
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366970 8 + 146850525 GAAGCTTA
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287506 8 + 139301422 GAAGCTTA
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33708286 8 + 155834243 AAAGTTGA
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4063263 8 +   9144518 GAAGCTCC
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1562790 8 -   1847653 GAAGCTCA
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1180696 8 -   7152218 GAGGCTCA
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                  9263 8 -     34802 GAGGCTCA
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2914061 8 -  11690531 GAAGCTCA
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10874030 8 +  33672925 GAAGCACA
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9907091 8 +  34209287 GGAGCTCA
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3120017 8 -   3193751 GAAGCTCA
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                237627 8 -   2104649 GAAGCTCA
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39452615 8 -  55688157 GAAGTTCA
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 18609 8 +   6345240 GAAGCTCA
i triMan1.JH594766             C 0 C 0
s monDom5.chr8                 137893827 5 - 312544902 ---TTGGG
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    319146 5 -   4230514 ---attga
i sarHar1.chr5_GL861647_random C 0 C 0
s macEug2.GL108065                 83968 5 -    187545 ---TTGGA
i macEug2.GL108065             C 0 C 0
s colLiv1.KB375358               1019711 8 +   1462937 gaacttta
i colLiv1.KB375358             C 0 C 0
s falChe1.KB398074               4263465 8 -   7151304 taaattta
i falChe1.KB398074             C 0 N 0
s falPer1.KB391107               2216082 8 -   3101084 taaattta
i falPer1.KB391107             C 0 N 0
s amaVit1.KB277496                  7574 7 -     10329 -aaactcC
i amaVit1.KB277496             I 2 I 9
s melGal1.chr1                  24929439 8 + 204065131 TTAACTTG
i melGal1.chr1                 I 8 C 0
s chrPic2.chr2                  18523651 7 -  68452538 tatgttt-
i chrPic2.chr2                 I 4 C 0
s pelSin1.JH208680               8419349 7 -  16024077 TAGGttt-
i pelSin1.JH208680             I 3 C 0
s anoCar2.chrUn_GL344195           44314 8 +     59083 GAAGTTGA
i anoCar2.chrUn_GL344195       I 1 C 0
e ornAna1.Ultra479               3871811 317 -   6008416 I
e allMis1.JH737798                 79914 2359 +    106177 I
e taeGut2.chr1A                 23692727 0 +  73657157 I

a score=69142.000000
s hg38.chr8_KI270814v1_alt        123113 6 +    141812 AGCAAT
s panTro4.chr8                  55025598 6 + 143986469 AGCAAT
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59166187 6 + 153482349 ACCAAT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81381803 6 - 104879549 AACATT
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61693144 6 + 150158102 AGCAAT
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366978 6 + 146850525 AGCAAT
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287514 6 + 139301422 AGCAGT
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33708294 6 + 155834243 AATACT
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4063271 6 +   9144518 AGCATA
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1562798 6 -   1847653 AGCATT
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1180704 6 -   7152218 GGCATT
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                  9271 6 -     34802 GGAATT
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2914069 6 -  11690531 AGCATT
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10874038 6 +  33672925 AGCATT
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9907099 6 +  34209287 AGCATT
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3120025 6 -   3193751 AGCAAT
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                237635 6 -   2104649 AGCATT
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39452623 6 -  55688157 AGCATT
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 18617 6 +   6345240 AGCATT
i triMan1.JH594766             C 0 C 0
s monDom5.chr8                 137893832 6 - 312544902 AGTATT
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    319151 6 -   4230514 aacctt
i sarHar1.chr5_GL861647_random C 0 C 0
s macEug2.GL108065                 83973 6 -    187545 AGCATT
i macEug2.GL108065             C 0 C 0
s colLiv1.KB375358               1019719 5 +   1462937 -tttat
i colLiv1.KB375358             C 0 I 15
s amaVit1.KB277496                  7590 6 -     10329 GGCAAT
i amaVit1.KB277496             I 9 I 9
s melGal1.chr1                  24929447 6 + 204065131 AATTAT
i melGal1.chr1                 C 0 I 7
s anoCar2.chrUn_GL344195           44322 6 +     59083 AAAAGT
i anoCar2.chrUn_GL344195       C 0 C 0
e ornAna1.Ultra479               3871811 317 -   6008416 I
e allMis1.JH737798                 79914 2359 +    106177 I
e chrPic2.chr2                  18523658 0 -  68452538 C
e pelSin1.JH208680               8419356 0 -  16024077 C
e taeGut2.chr1A                 23692727 0 +  73657157 I

a score=136056.000000
s hg38.chr8_KI270814v1_alt        123119 23 +    141812 CC-----CTGAATAAAA-----------------ATAATTTGAAA
s panTro4.chr8                  55025604 23 + 143986469 CC-----CTGAATAAAA-----------------ATAATTTGAAA
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59166193 23 + 153482349 CC-----GTGAATAAAA-----------------ATAATTTGAAA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81381809 28 - 104879549 CCTATTTTTCTATGAAA-----------------ATAGTTTGACA
i nomLeu3.chr18                C 0 I 5
s rheMac3.chr8                  61693150 23 + 150158102 CC-----CTAAATAAAA-----------------ATAATTTGAAA
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58366984 23 + 146850525 CC-----CTAAATAAAA-----------------ATAATTTGAAA
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287520 23 + 139301422 CC-----CTGGATAAAA-----------------ATAATTTGAAA
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33708300 23 + 155834243 GC-----TTGAATGAAA-----------------ATAGTTTGAAC
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4063277 23 +   9144518 AC-----Ctaaataaaa-----------------atatttggaaa
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1562804 23 -   1847653 CC-----ATGAATGAAA-----------------ATACTTTGGAA
i otoGar3.GL873762             C 0 I 5
s vicPac2.KB632521               1180710 23 -   7152218 CC-----CTGAGAGAAA-----------------ATATTTGGAAA
i vicPac2.KB632521             C 0 I 4
s camFer1.KB018161                  9277 23 -     34802 CC-----CTGAGTGAAA-----------------ATATTTGGAAA
i camFer1.KB018161             C 0 I 5
s orcOrc1.KB316915               2914075 23 -  11690531 CC-----CTGAGTGAAA-----------------ATATTTTGAAA
i orcOrc1.KB316915             C 0 I 5
s equCab2.chr29                 10874044 23 +  33672925 CA-----GTGAATGAAA-----------------ATACTTTGAAA
i equCab2.chr29                C 0 I 5
s cerSim1.JH767738               9907105 23 +  34209287 CC-----CTGAATGAAA-----------------ATAGTTTGAAA
i cerSim1.JH767738             C 0 I 5
s pteAle1.KB031146               3120031 23 -   3193751 CC-----CTGAATGACA-----------------GTGTTTTGAAA
i pteAle1.KB031146             C 0 I 5
s myoLuc2.GL429990                237641 23 -   2104649 CC-----CTGAATTGAA-----------------ATGTTTTGAAA
i myoLuc2.GL429990             C 0 I 5
s loxAfr3.scaffold_15           39452629 23 -  55688157 CT-----CTGAATGAAA-----------------ATATTTTGGAA
i loxAfr3.scaffold_15          C 0 I 5
s triMan1.JH594766                 18623 16 +   6345240 CT-----CTCAATA------------------------TTTTAAA
i triMan1.JH594766             C 0 I 5
s monDom5.chr8                 137893838 23 - 312544902 TC-----TTTAATGAAA-----------------ATAACTTAAAA
i monDom5.chr8                 C 0 I 1569
s sarHar1.chr5_GL861647_random    319157 23 -   4230514 tc-----tttaatgaaa-----------------ataacttaaaa
i sarHar1.chr5_GL861647_random C 0 C 0
s macEug2.GL108065                 83979 23 -    187545 TC-----TTTAATGAAA-----------------ATAACTTAAAA
i macEug2.GL108065             C 0 C 0
s amaVit1.KB277496                  7605 12 -     10329 CT-----GTGAAGAGAT----------------------------
i amaVit1.KB277496             I 9 C 0
s melGal1.chr1                  24929460  6 + 204065131 CT-----TTCA----------------------------------
i melGal1.chr1                 I 7 C 0
s chrPic2.chr2                  18523658 12 -  68452538 tt-----aaaaatagaa----------------------------
i chrPic2.chr2                 C 0 I 1
s pelSin1.JH208680               8419356 10 -  16024077 tt-----ttGA--AGAA----------------------------
i pelSin1.JH208680             C 0 I 1
s anoCar2.chrUn_GL344195           44328 29 +     59083 TC-----TGGAAGAAATGTATTACTCGATACACT-----------
i anoCar2.chrUn_GL344195       C 0 C 0
e ornAna1.Ultra479               3871811 317 -   6008416 I
e colLiv1.KB375358               1019724 15 +   1462937 I
e allMis1.JH737798                 79914 2359 +    106177 I
e taeGut2.chr1A                 23692727  0 +  73657157 I

a score=46628.000000
s hg38.chr8_KI270814v1_alt        123142 4 +    141812 TAAT
s panTro4.chr8                  55025627 4 + 143986469 TAAT
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59166216 4 + 153482349 TAAC
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81381842 4 - 104879549 TAAT
i nomLeu3.chr18                I 5 C 0
s rheMac3.chr8                  61693173 4 + 150158102 TAAT
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58367007 4 + 146850525 TAAT
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287543 4 + 139301422 TAAT
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33708323 4 + 155834243 AAAC
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4063300 4 +   9144518 taat
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1562832 4 -   1847653 TAAT
i otoGar3.GL873762             I 5 C 0
s vicPac2.KB632521               1180737 1 -   7152218 ---T
i vicPac2.KB632521             I 4 C 0
s camFer1.KB018161                  9305 4 -     34802 TAGT
i camFer1.KB018161             I 5 C 0
s orcOrc1.KB316915               2914103 4 -  11690531 TAAT
i orcOrc1.KB316915             I 5 C 0
s equCab2.chr29                 10874072 4 +  33672925 TAGT
i equCab2.chr29                I 5 C 0
s cerSim1.JH767738               9907133 4 +  34209287 TAGT
i cerSim1.JH767738             I 5 C 0
s pteAle1.KB031146               3120059 4 -   3193751 TAAT
i pteAle1.KB031146             I 5 C 0
s myoLuc2.GL429990                237669 4 -   2104649 TAAT
i myoLuc2.GL429990             I 5 C 0
s loxAfr3.scaffold_15           39452657 4 -  55688157 TAAT
i loxAfr3.scaffold_15          I 5 C 0
s triMan1.JH594766                 18644 4 +   6345240 TAAT
i triMan1.JH594766             I 5 C 0
s sarHar1.chr5_GL861647_random    319180 4 -   4230514 ttat
i sarHar1.chr5_GL861647_random C 0 I 1417
s macEug2.GL108065                 84002 4 -    187545 TCAT
i macEug2.GL108065             C 0 I 1294
e ornAna1.Ultra479               3871811 317 -   6008416 I
e anoCar2.chrUn_GL344195           44357 0 +     59083 C
e colLiv1.KB375358               1019724 15 +   1462937 I
e allMis1.JH737798                 79914 2359 +    106177 I
e melGal1.chr1                  24929466 0 + 204065131 C
e amaVit1.KB277496                  7617 0 -     10329 C
e chrPic2.chr2                  18523670 1 -  68452538 I
e pelSin1.JH208680               8419366 1 -  16024077 I
e monDom5.chr8                 137893861 1569 - 312544902 I
e taeGut2.chr1A                 23692727 0 +  73657157 I

a score=-72849.000000
s hg38.chr8_KI270814v1_alt        123146  6 +    141812 G-----GTCTA-
s panTro4.chr8                  55025631  6 + 143986469 G-----GTCTA-
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59166220  6 + 153482349 G-----GTCTA-
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81381846  6 - 104879549 T-----GTCTA-
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61693177  6 + 150158102 G-----GTCTA-
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58367011  6 + 146850525 G-----GTCTA-
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287547  6 + 139301422 G-----GTCTA-
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33708327 11 + 155834243 TGAATTGTCtt-
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4063304  1 +   9144518 t-----------
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1562836  6 -   1847653 T-----GTCTA-
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1180738  6 -   7152218 T-----GTCTA-
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                  9309  6 -     34802 T-----GTCTA-
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2914107  6 -  11690531 T-----ATCTG-
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10874076  6 +  33672925 T-----GTCTA-
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9907137  6 +  34209287 T-----GTCTA-
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3120063  6 -   3193751 T-----TTCTA-
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                237673  6 -   2104649 T-----GTCTA-
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39452661  6 -  55688157 T-----GTTTA-
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 18648  6 +   6345240 T-----GTTTA-
i triMan1.JH594766             C 0 C 0
s colLiv1.KB375358               1019739  3 +   1462937 ---------GGA
i colLiv1.KB375358             I 15 I 3
s amaVit1.KB277496                  7617  6 -     10329 ------TGTCGA
i amaVit1.KB277496             C 0 N 0
s melGal1.chr1                  24929466  3 + 204065131 ---------GGA
i melGal1.chr1                 C 0 I 3
s chrPic2.chr2                  18523671  2 -  68452538 ----------aa
i chrPic2.chr2                 I 1 I 4
s pelSin1.JH208680               8419367  2 -  16024077 ----------AA
i pelSin1.JH208680             I 1 I 4
s anoCar2.chrUn_GL344195           44357  5 +     59083 -------GCTCA
i anoCar2.chrUn_GL344195       C 0 C 0
e ornAna1.Ultra479               3871811 317 -   6008416 I
e allMis1.JH737798                 79914 2359 +    106177 I
e macEug2.GL108065                 84006 1294 -    187545 I
e sarHar1.chr5_GL861647_random    319184 1417 -   4230514 I
e monDom5.chr8                 137893861 1569 - 312544902 I
e taeGut2.chr1A                 23692727  0 +  73657157 I

a score=90640.000000
s hg38.chr8_KI270814v1_alt        123152 12 +    141812 AGATTTTACCTT---
s panTro4.chr8                  55025637 12 + 143986469 AGATTTTACCTT---
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59166226 12 + 153482349 AGATTTTACTTT---
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81381852 12 - 104879549 GGATTTTGCTTT---
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61693183 12 + 150158102 ACATTTTACTTT---
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58367017 12 + 146850525 ACATTTTACTTT---
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287553 12 + 139301422 ACATTTTACTTT---
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33708338 12 + 155834243 taattttactat---
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4063305 10 +   9144518 --ataaaacttt---
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1562842 12 -   1847653 AGATTTTTCTTA---
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1180744 12 -   7152218 AGATTTTACTtt---
i vicPac2.KB632521             C 0 I 249
s camFer1.KB018161                  9315 12 -     34802 AGATTTTACTTT---
i camFer1.KB018161             C 0 I 1
s orcOrc1.KB316915               2914113 12 -  11690531 AGATTTCACTTT---
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10874082 12 +  33672925 AGATTTCACTTT---
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9907143 12 +  34209287 AGATTTCACATT---
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3120069 12 -   3193751 AGATTTCAGTTT---
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                237679 12 -   2104649 GGATTTCACTTT---
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39452667 12 -  55688157 AGACTTCACTTT---
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 18654 12 +   6345240 CGATTTCACTTA---
i triMan1.JH594766             C 0 C 0
s colLiv1.KB375358               1019745 12 +   1462937 ---ATTTTCTCCACT
i colLiv1.KB375358             I 3 C 0
s melGal1.chr1                  24929472 12 + 204065131 ---ATGTACTCCCCT
i melGal1.chr1                 I 3 C 0
e ornAna1.Ultra479               3871811 317 -   6008416 I
e anoCar2.chrUn_GL344195           44362  0 +     59083 C
e allMis1.JH737798                 79914 2359 +    106177 I
e macEug2.GL108065                 84006 1294 -    187545 I
e sarHar1.chr5_GL861647_random    319184 1417 -   4230514 I
e chrPic2.chr2                  18523673  4 -  68452538 I
e pelSin1.JH208680               8419369  4 -  16024077 I
e monDom5.chr8                 137893861 1569 - 312544902 I
e taeGut2.chr1A                 23692727  0 +  73657157 I

a score=33289.000000
s hg38.chr8_KI270814v1_alt        123164 11 +    141812 AAATACTAATA
s panTro4.chr8                  55025649 11 + 143986469 AAATACTAATA
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59166238 11 + 153482349 AAATACTAATA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81381864 11 - 104879549 AAATATTAATA
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61693195 11 + 150158102 AAATACTAATA
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58367029 11 + 146850525 AAATACTAATA
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287565 11 + 139301422 AAATACTAATA
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33708350 11 + 155834243 aagtataaata
i calJac3.chr7                 C 0 I 327
s saiBol1.JH378196               4063315 11 +   9144518 aaatattGATA
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1562854 10 -   1847653 AAATATCAAT-
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1181005 11 -   7152218 AAAGAATGTTA
i vicPac2.KB632521             I 249 C 0
s camFer1.KB018161                  9328 11 -     34802 AAAGAATGTTA
i camFer1.KB018161             I 1 C 0
s orcOrc1.KB316915               2914125 11 -  11690531 AAATCATTATA
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10874094 11 +  33672925 AAAAAATGATA
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9907155 11 +  34209287 AAATAATAATA
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3120081  8 -   3193751 AC---ATGATA
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                237691 11 -   2104649 ACATAATGACA
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39452679  8 -  55688157 ---AAATGATA
i loxAfr3.scaffold_15          C 0 I 2
s triMan1.JH594766                 18666  8 +   6345240 ---AAATGATA
i triMan1.JH594766             C 0 I 1
s colLiv1.KB375358               1019757 11 +   1462937 TGCTCTTGCTA
i colLiv1.KB375358             C 0 C 0
s melGal1.chr1                  24929484 11 + 204065131 TACTCTTGCTG
i melGal1.chr1                 C 0 C 0
s chrPic2.chr2                  18523677  8 -  68452538 ---catttttg
i chrPic2.chr2                 I 4 C 0
s pelSin1.JH208680               8419373  8 -  16024077 ---CATTTTTG
i pelSin1.JH208680             I 4 C 0
s anoCar2.chrUn_GL344195           44362  6 +     59083 -----TGATCA
i anoCar2.chrUn_GL344195       C 0 C 0
e ornAna1.Ultra479               3871811 317 -   6008416 I
e allMis1.JH737798                 79914 2359 +    106177 I
e macEug2.GL108065                 84006 1294 -    187545 I
e sarHar1.chr5_GL861647_random    319184 1417 -   4230514 I
e monDom5.chr8                 137893861 1569 - 312544902 I
e taeGut2.chr1A                 23692727  0 +  73657157 I

a score=78413.000000
s hg38.chr8_KI270814v1_alt        123175  9 +    141812 TCTTTA-AAA
s panTro4.chr8                  55025660  9 + 143986469 TCTTTA-AAA
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59166249  9 + 153482349 TCTTTA-AAA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81381875 10 - 104879549 TTTTTACAAG
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61693206  9 + 150158102 TCTTTC-AAA
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58367040  9 + 146850525 TCTTTC-AAA
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287576  9 + 139301422 TCTTTT-AAA
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33708688 10 + 155834243 tttttaCAAG
i calJac3.chr7                 I 327 C 0
s saiBol1.JH378196               4063326  9 +   9144518 CTTTTA-AAG
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1562864  9 -   1847653 TTTTTA-AAG
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1181016  9 -   7152218 TTGCCA-AAG
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                  9339  9 -     34802 TTTCCA-AAG
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2914136  9 -  11690531 TTTCTA-AAG
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10874105  9 +  33672925 CTTCTA-AAG
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9907166  9 +  34209287 CTTTTA-AAG
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3120089  9 -   3193751 CTTCTA-AAG
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                237702  9 -   2104649 TTTCTG-AAG
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39452689  9 -  55688157 TTCTAA-AGG
i loxAfr3.scaffold_15          I 2 C 0
s triMan1.JH594766                 18675  9 +   6345240 TTCTAA-AAG
i triMan1.JH594766             I 1 C 0
s colLiv1.KB375358               1019768  9 +   1462937 TCTCTG-AAC
i colLiv1.KB375358             C 0 I 2
s melGal1.chr1                  24929495  9 + 204065131 TCTCTG-AAC
i melGal1.chr1                 C 0 I 2
s chrPic2.chr2                  18523685  9 -  68452538 tcttaa-aac
i chrPic2.chr2                 C 0 I 12
s pelSin1.JH208680               8419381  9 -  16024077 TGtcta-aaa
i pelSin1.JH208680             C 0 N 0
s anoCar2.chrUn_GL344195           44368  9 +     59083 CACCTA-AAG
i anoCar2.chrUn_GL344195       C 0 I 22
e ornAna1.Ultra479               3871811 317 -   6008416 I
e allMis1.JH737798                 79914 2359 +    106177 I
e macEug2.GL108065                 84006 1294 -    187545 I
e sarHar1.chr5_GL861647_random    319184 1417 -   4230514 I
e monDom5.chr8                 137893861 1569 - 312544902 I
e taeGut2.chr1A                 23692727  0 +  73657157 I

a score=66344.000000
s hg38.chr8_KI270814v1_alt        123184 6 +    141812 AAGTAT
s panTro4.chr8                  55025669 6 + 143986469 AAGTAT
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59166258 6 + 153482349 AAGTAT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81381885 6 - 104879549 AATTAT
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61693215 6 + 150158102 AAGTAT
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58367049 6 + 146850525 AAGTAT
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287585 6 + 139301422 AAGTAT
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33708698 6 + 155834243 AACTAT
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4063335 6 +   9144518 AAGCAT
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1562873 6 -   1847653 AGGCAT
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1181025 6 -   7152218 AAGCAT
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                  9348 6 -     34802 AAGCAT
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2914145 6 -  11690531 AAGCAT
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10874114 6 +  33672925 AATCAT
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9907175 6 +  34209287 AAGCAT
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3120098 6 -   3193751 AAGCAG
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                237711 6 -   2104649 AAGCAG
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39452698 6 -  55688157 AAACAC
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 18684 6 +   6345240 AAACAT
i triMan1.JH594766             C 0 C 0
s colLiv1.KB375358               1019779 3 +   1462937 ---CAG
i colLiv1.KB375358             I 2 I 3
s melGal1.chr1                  24929506 3 + 204065131 ---CAT
i melGal1.chr1                 I 2 I 3
s anoCar2.chrUn_GL344195           44399 6 +     59083 aaatat
i anoCar2.chrUn_GL344195       I 22 I 324
e ornAna1.Ultra479               3871811 317 -   6008416 I
e allMis1.JH737798                 79914 2359 +    106177 I
e macEug2.GL108065                 84006 1294 -    187545 I
e sarHar1.chr5_GL861647_random    319184 1417 -   4230514 I
e chrPic2.chr2                  18523694 12 -  68452538 I
e monDom5.chr8                 137893861 1569 - 312544902 I
e taeGut2.chr1A                 23692727 0 +  73657157 I

a score=150713.000000
s hg38.chr8_KI270814v1_alt        123190 81 +    141812 TAGAGAGTATGGCTTTCTTTTATG-----------CATTTATGGTAGATATT--------------TGAATTT----GTT--------ATAGGTAAAAC---TTTTGTT--T-----TC-AA--TTTTTTT
s panTro4.chr8                  55025675 81 + 143986469 TAGAGAGTATGGCTTTCTTTTATG-----------CATTTATGGTACATATT--------------TGAATTT----GTT--------ATAGGTAAAAC---TTTTGTT--T-----TC-AA--TTTTTTT
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59166264 80 + 153482349 TAGAGAGTATGGCTTTCTTTTATG-----------CATTTATGGTACATATT--------------TGAATTT----GTT--------ATAGGTAAAAC---TTTTGTT--T-----TC-AA---TTTTTT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81381891 72 - 104879549 T----AGTATGGCTT--TTCTGTG-----------CA-TTATGATAAATATT--------------TGAATTT----GTT--------AAAGGTAAAAC---T----TT--T-----TC-AAATATTCTTT
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61693221 77 + 150158102 TAGAGAGTATGGCTTTCTTTTATG-----------CATTTATGGTACATATT--------------TGAATTT----GTT--------ATAGGTAAAAC--------TT--T-----TG-AA-TTATTTTT
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58367055 77 + 146850525 TAGAGAGTATGGCTTTCTTTTATG-----------CATTTATGGTACATATT--------------TGAATTT----GTT--------ATAGGTAAAAC--------TT--T-----TG-AA-TTATTTTT
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287591 82 + 139301422 TAGAGAGTATGGCTTTCTTTTATG-----------CATTTATGGTACATATT--------------TGAATTT----GTT--------ATAGGTAAAAC---TTTTGTT--T-----TG-AA-TTATTTTT
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33708704 70 + 155834243 TACAGAGTATGGCTTTTT---GTG-----------CATT-----TAACTATT--------------TGAATTT----GTT--------AACGGTAAATT--------TT--T-----TC-AAATATTCTTT
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4063341 83 +   9144518 TAGAGGGTACATCTTTTTTAGGTA-----------TGGT-----AAACAATTT-TG---AAAACACTGAATTT----GTA--------AAAGGTAATGC--------TT--T-----TT-AATTTTTTTTT
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1562879 92 -   1847653 TAGCGGGTACAGCTTTCTTTTATT-----------CATTTATGGCAAATATCTGTG---AAAGCACTGAATTT----GTT--------AAAGGTAAATT---TTT--TT--G-----CT-AAGTGTTTTTC
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1181031 95 -   7152218 TAGAAGGTACAGCTTTCTTTTATT-----------TGTTTATGGCAGATATTTATG---AAAACATTGCATTT----TTT--------GCAGGTAAAAAAATTTTT-TT--T-----TC-AGATATTTTT-
i vicPac2.KB632521             C 0 I 2
s camFer1.KB018161                  9354 95 -     34802 TAGAAGGTACAGCTTTCTTTTATT-----------TGTTTATGGCAGATATTTATG---AAAACATTGCGTTT----TTT--------GCAGGTAAAAAAATTTTT-TT--T-----TC-AGATATTTTT-
i camFer1.KB018161             C 0 I 2
s orcOrc1.KB316915               2914151 97 -  11690531 TAGAGGGTATAGCTTTCTTTTATG-----------TGTCTATAGCAGATATTTGTG---AAAACATTGCATTT----GTT--------AAAGGTAAGACTTTTTTT-TTCCC-----CC-AAATATTTTT-
i orcOrc1.KB316915             C 0 I 3
s equCab2.chr29                 10874120 90 +  33672925 TAAAGGGTACGGCTTTCCTTTATG-----------CAATTATGGCAAATATTTGTG---AAAACACTGAATTT----GTT--------AAAGACAAAAT---TTTT-TT--T-----CA-GAATATAT---
i equCab2.chr29                C 0 I 2
s cerSim1.JH767738               9907181 97 +  34209287 TAGAGGGTACAGCTTTCCTTTATG-----------CATTTATGACAAATATTTCTG---AAAACACTGAGTTT----GTT--------AAAGGTAAAAC---TTTT-TT--TTTCCCCC-AAATATTTTT-
i cerSim1.JH767738             C 0 I 1739
s pteAle1.KB031146               3120104 90 -   3193751 AAGAGGGTACAGCTCTCTTTCATG-----------TACTTACGGCAAATATTTGTG---CAAACAA--CATTT----GTC--------AAAGGCACAAC---TTTT-CT--T-----TT-AAATATATTT-
i pteAle1.KB031146             C 0 I 2
s myoLuc2.GL429990                237717 87 -   2104649 TAGATATTACAGCTCTCTTTTATG-----------CCCTTATGACAAATAATTGTG---AAAACAC--AATTT----GTT--------AGAGGCAAAAC------T-CT--T-----TT-AAAAATATTT-
i myoLuc2.GL429990             C 0 I 2
s loxAfr3.scaffold_15           39452704 95 -  55688157 TAGAGGGTATAGTCATCTTTTATG-----------CATTTGTGGCAAATATTTGTG---AGAACAGTGAATTTAATTGTT--------AAAGATAAAGC---T----TT--T-----TTGAAGTATCTCTT
i loxAfr3.scaffold_15          C 0 I 1
s triMan1.JH594766                 18690 94 +   6345240 TGGAGGGTACAGCTGTCTTTTATG-----------CATTTATGGCAAATATTTGTG---AAAACACTGAATTTAATCATT--------AAAGATAAAGC---T----TT--T-----TC-AGATATCTCTT
i triMan1.JH594766             C 0 I 1
s colLiv1.KB375358               1019785 87 +   1462937 GAGATAGCAGAATTTCTCCTTGGGCACGGAGCTAACGTGCATGCTCGAGATCAGCGTGAAAGGTGAGGGGTTA----GTCAGAACACTACA----------------------------------------
i colLiv1.KB375358             I 3 C 0
s melGal1.chr1                  24929512 89 + 204065131 GAGATGGTAGAGTTCCTCCTTAAAAAAGGAGCTGACGTTCATGCTCGAGATCTGTGTGAGAGGTGAGGAAATG----ATCTAAACTCTCCAGG--------------------------------------
i melGal1.chr1                 I 3 C 0
s chrPic2.chr2                  18523706 53 -  68452538 ------------tttccttttaaaatctgttttaa---------tcAGAATCTT-------GGTATATAAATT----ATC--------ATAGG--------------------------------------
i chrPic2.chr2                 I 12 C 0
e ornAna1.Ultra479               3871811 317 -   6008416 I
e anoCar2.chrUn_GL344195           44405 324 +     59083 I
e allMis1.JH737798                 79914 2359 +    106177 I
e macEug2.GL108065                 84006 1294 -    187545 I
e sarHar1.chr5_GL861647_random    319184 1417 -   4230514 I
e monDom5.chr8                 137893861 1569 - 312544902 I
e taeGut2.chr1A                 23692727  0 +  73657157 I

a score=-46136.000000
s hg38.chr8_KI270814v1_alt        123271 30 +    141812 TTGAC-TGAAGTATT---------TTTTTTTCTTTCTAAG----------
s panTro4.chr8                  55025756 29 + 143986469 TTGAC-TGAAGTA-T---------TTTTTTTCTTTCAAAG----------
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59166344 29 + 153482349 TTGAC-TGAAGTA-T---------TTTTTTTCTTTCTAAC----------
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81381963 29 - 104879549 CCCAC-CCAAGTT-T---------TTTTTTTCTTTCCAGT----------
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61693298 26 + 150158102 TTGAC-TGAAGTA-T---------TTTTT---TTTCTAAC----------
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58367132 26 + 146850525 TTGAC-TGAAGTA-T---------TTTTT---TTTCTAAC----------
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287673 26 + 139301422 TTGAC-TGAAGTA-T---------TTTTT---TTTCTAAC----------
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33708774 28 + 155834243 CCCAC-CTAAG-T-T---------TTTTTTTCTTTCCAAT----------
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4063424 22 +   9144518 CCCA--------G-T---------TTTTTTTTTTTCTAAT----------
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1562971 26 -   1847653 CCCAC-CCAAGTG-T---------TTTTT---TTCCTAAT----------
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1181128 23 -   7152218 CCCAC-TCAAAGT-T---------TTTTT------CTGAT----------
i vicPac2.KB632521             I 2 C 0
s camFer1.KB018161                  9451 23 -     34802 CCCAC-TCAAAAT-T---------TTTTT------CTCAT----------
i camFer1.KB018161             I 2 C 0
s orcOrc1.KB316915               2914251 23 -  11690531 CCCGC-TCAAATT-T---------TTTTC------CTGAT----------
i orcOrc1.KB316915             I 3 C 0
s equCab2.chr29                 10874212 23 +  33672925 ACCCA-CACAATT-T---------TTTCC------CTAAG----------
i equCab2.chr29                I 2 C 0
s pteAle1.KB031146               3120196 23 -   3193751 CCATC-CTAGTTT-T---------TTCTT------CTAAT----------
i pteAle1.KB031146             I 2 C 0
s myoLuc2.GL429990                237806 23 -   2104649 TTGCA-CCTGAGT-T---------TTTTT------CTAAT----------
i myoLuc2.GL429990             I 2 C 0
s loxAfr3.scaffold_15           39452800 26 -  55688157 -CTAC-CAAAGCT-T---------TTTTT--TTTCCTAAT----------
i loxAfr3.scaffold_15          I 1 C 0
s triMan1.JH594766                 18785 36 +   6345240 -CTACTCCAAGTT-TTTTGTTTTGTTTTT--TTTCCTAAT----------
i triMan1.JH594766             I 1 C 0
s colLiv1.KB375358               1019872 24 +   1462937 ------------T-G---------AGTCT----CTTTAGTACTCTCTAAG
i colLiv1.KB375358             C 0 I 48
s melGal1.chr1                  24929601 30 + 204065131 ------TTAACTT-A---------CTTGT----CTTCAGTTTGGACTGAT
i melGal1.chr1                 C 0 I 11
s chrPic2.chr2                  18523759 25 -  68452538 ------TAAAGTA-g---------cactt----ctggggtggggg-----
i chrPic2.chr2                 C 0 C 0
e ornAna1.Ultra479               3871811 317 -   6008416 I
e anoCar2.chrUn_GL344195           44405 324 +     59083 I
e allMis1.JH737798                 79914 2359 +    106177 I
e macEug2.GL108065                 84006 1294 -    187545 I
e sarHar1.chr5_GL861647_random    319184 1417 -   4230514 I
e monDom5.chr8                 137893861 1569 - 312544902 I
e taeGut2.chr1A                 23692727  0 +  73657157 I
e cerSim1.JH767738               9907278 1739 +  34209287 I

a score=196910.000000
s hg38.chr8_KI270814v1_alt        123301 26 +    141812 TAGTGTACAACAACACAGGAAAGC------AA
s panTro4.chr8                  55025785 26 + 143986469 TAGTGTACAACAACACAGGAAAGC------AA
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59166373 26 + 153482349 TAGTGTACAACAACACAGGAAAGC------AA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81381992 24 - 104879549 TAGTGTAAAAC--CACAAGAAAGT------AA
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61693324 26 + 150158102 TAGTGTACAACAACACAGGAAAGC------AA
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58367158 26 + 146850525 TAGTGTACAACAACACAGGAAAGC------AA
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287699 26 + 139301422 TAGTGTACAGCAACACAGGAAAGC------AA
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33708802 24 + 155834243 TAGTGTAAAAC--TACAGAAAAGC------AA
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4063446 26 +   9144518 TAGTATAACATGATCCTGGAAAGT------AG
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1562997 26 -   1847653 TAGTATAAAACAACACAGGAAAGC------AA
i otoGar3.GL873762             C 0 I 2140
s vicPac2.KB632521               1181151 24 -   7152218 TGGCATACG--AATACAAGAAAGC------AA
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                  9474 24 -     34802 TGGCATACG--AATACAAGAAAGC------AA
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2914274 26 -  11690531 TAGTGTAAAACAACACAGAAATGC------AA
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10874235 26 +  33672925 TAGTGTAAAACAACACAGGAAAGC------AA
i equCab2.chr29                C 0 I 2013
s pteAle1.KB031146               3120219 26 -   3193751 TAAGGTAAAACAACGCAAGAAAGC------AA
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                237829 24 -   2104649 TAATATAAAACAACAC--GAGAGC------AA
i myoLuc2.GL429990             C 0 I 1317
s loxAfr3.scaffold_15           39452826 26 -  55688157 TAGTATAAAACAACATAGGAAAAC------AG
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 18821 26 +   6345240 TAGTGTAAAACAATATAGGAAAAC------AA
i triMan1.JH594766             C 0 I 3129
s melGal1.chr1                  24929642 32 + 204065131 GAATGAGCACTGAAGTAGAAAGACGCAGAGAA
i melGal1.chr1                 I 11 C 0
s chrPic2.chr2                  18523784 11 -  68452538 ---------------tggctagCC------AA
i chrPic2.chr2                 C 0 C 0
e ornAna1.Ultra479               3871811 317 -   6008416 I
e anoCar2.chrUn_GL344195           44405 324 +     59083 I
e colLiv1.KB375358               1019896 48 +   1462937 I
e allMis1.JH737798                 79914 2359 +    106177 I
e macEug2.GL108065                 84006 1294 -    187545 I
e sarHar1.chr5_GL861647_random    319184 1417 -   4230514 I
e monDom5.chr8                 137893861 1569 - 312544902 I
e taeGut2.chr1A                 23692727  0 +  73657157 I
e cerSim1.JH767738               9907278 1739 +  34209287 I

a score=15383.000000
s hg38.chr8_KI270814v1_alt        123327 2 +    141812 AG
s panTro4.chr8                  55025811 2 + 143986469 AG
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59166399 2 + 153482349 AG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81382016 2 - 104879549 AA
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61693350 2 + 150158102 AG
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58367184 2 + 146850525 AG
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287725 2 + 139301422 AG
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33708826 2 + 155834243 AT
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4063472 2 +   9144518 AA
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1565163 2 -   1847653 AG
i otoGar3.GL873762             I 2140 C 0
s vicPac2.KB632521               1181175 2 -   7152218 AA
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                  9498 2 -     34802 AA
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2914300 2 -  11690531 AA
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10876274 2 +  33672925 ag
i equCab2.chr29                I 2013 C 0
s cerSim1.JH767738               9909017 2 +  34209287 ag
i cerSim1.JH767738             I 1739 C 0
s pteAle1.KB031146               3120245 2 -   3193751 AA
i pteAle1.KB031146             C 0 I 1652
s myoLuc2.GL429990                239170 2 -   2104649 AG
i myoLuc2.GL429990             I 1317 C 0
s loxAfr3.scaffold_15           39452852 2 -  55688157 AA
i loxAfr3.scaffold_15          C 0 I 2654
s melGal1.chr1                  24929674 2 + 204065131 GA
i melGal1.chr1                 C 0 C 0
s chrPic2.chr2                  18523795 2 -  68452538 AT
i chrPic2.chr2                 C 0 C 0
e ornAna1.Ultra479               3871811 317 -   6008416 I
e anoCar2.chrUn_GL344195           44405 324 +     59083 I
e colLiv1.KB375358               1019896 48 +   1462937 I
e allMis1.JH737798                 79914 2359 +    106177 I
e macEug2.GL108065                 84006 1294 -    187545 I
e sarHar1.chr5_GL861647_random    319184 1417 -   4230514 I
e monDom5.chr8                 137893861 1569 - 312544902 I
e taeGut2.chr1A                 23692727 0 +  73657157 I
e triMan1.JH594766                 18847 3129 +   6345240 I

a score=-8000.000000
s hg38.chr8_KI270814v1_alt        123329 1 +    141812 -T
s panTro4.chr8                  55025813 1 + 143986469 -T
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59166401 1 + 153482349 -T
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81382018 1 - 104879549 -T
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61693352 1 + 150158102 -T
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58367186 1 + 146850525 -T
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287727 1 + 139301422 -T
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33708828 1 + 155834243 -T
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4063474 1 +   9144518 -T
i saiBol1.JH378196             C 0 I 2151
s otoGar3.GL873762               1565165 1 -   1847653 -T
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1181177 1 -   7152218 -C
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                  9500 1 -     34802 -C
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2914302 1 -  11690531 -C
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10876276 1 +  33672925 -t
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9909019 1 +  34209287 -t
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3121899 1 -   3193751 -T
i pteAle1.KB031146             I 1652 C 0
s myoLuc2.GL429990                239172 1 -   2104649 -T
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39455508 1 -  55688157 -T
i loxAfr3.scaffold_15          I 2654 C 0
s melGal1.chr1                  24929676 1 + 204065131 G-
i melGal1.chr1                 C 0 C 0
s chrPic2.chr2                  18523797 1 -  68452538 G-
i chrPic2.chr2                 C 0 C 0
e ornAna1.Ultra479               3871811 317 -   6008416 I
e anoCar2.chrUn_GL344195           44405 324 +     59083 I
e colLiv1.KB375358               1019896 48 +   1462937 I
e allMis1.JH737798                 79914 2359 +    106177 I
e macEug2.GL108065                 84006 1294 -    187545 I
e sarHar1.chr5_GL861647_random    319184 1417 -   4230514 I
e monDom5.chr8                 137893861 1569 - 312544902 I
e taeGut2.chr1A                 23692727 0 +  73657157 I
e triMan1.JH594766                 18847 3129 +   6345240 I

a score=11177.000000
s hg38.chr8_KI270814v1_alt        123330 3 +    141812 -TGG
s panTro4.chr8                  55025814 3 + 143986469 -TGG
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59166402 3 + 153482349 -TGG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81382019 3 - 104879549 -TTG
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61693353 3 + 150158102 -TGG
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58367187 3 + 146850525 -TGG
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287728 3 + 139301422 -TGG
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33708829 3 + 155834243 -TTG
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4065626 3 +   9144518 -tgg
i saiBol1.JH378196             I 2151 C 0
s otoGar3.GL873762               1565166 3 -   1847653 -TTG
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1181178 3 -   7152218 -TTG
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                  9501 3 -     34802 -TTG
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2914303 3 -  11690531 -TTG
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10876277 3 +  33672925 -ttg
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9909020 3 +  34209287 -ttg
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3121900 3 -   3193751 -TTG
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                239173 3 -   2104649 -TTA
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39455509 3 -  55688157 -TTG
i loxAfr3.scaffold_15          C 0 C 0
s melGal1.chr1                  24929677 3 + 204065131 TTT-
i melGal1.chr1                 C 0 C 0
s chrPic2.chr2                  18523798 3 -  68452538 TTC-
i chrPic2.chr2                 C 0 C 0
e ornAna1.Ultra479               3871811 317 -   6008416 I
e anoCar2.chrUn_GL344195           44405 324 +     59083 I
e colLiv1.KB375358               1019896 48 +   1462937 I
e allMis1.JH737798                 79914 2359 +    106177 I
e macEug2.GL108065                 84006 1294 -    187545 I
e sarHar1.chr5_GL861647_random    319184 1417 -   4230514 I
e monDom5.chr8                 137893861 1569 - 312544902 I
e taeGut2.chr1A                 23692727 0 +  73657157 I
e triMan1.JH594766                 18847 3129 +   6345240 I

a score=21000.000000
s hg38.chr8_KI270814v1_alt        123333 1 +    141812 C
s panTro4.chr8                  55025817 1 + 143986469 C
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59166405 1 + 153482349 C
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81382022 1 - 104879549 C
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61693356 1 + 150158102 C
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58367190 1 + 146850525 C
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287731 1 + 139301422 C
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33708832 1 + 155834243 C
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4065629 1 +   9144518 c
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1565169 1 -   1847653 C
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1181181 1 -   7152218 C
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                  9504 1 -     34802 C
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2914306 1 -  11690531 C
i orcOrc1.KB316915             C 0 I 2315
s equCab2.chr29                 10876280 1 +  33672925 c
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9909023 1 +  34209287 c
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3121903 1 -   3193751 C
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                239176 1 -   2104649 C
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39455512 1 -  55688157 C
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 21976 1 +   6345240 C
i triMan1.JH594766             I 3129 C 0
s melGal1.chr1                  24929680 1 + 204065131 C
i melGal1.chr1                 C 0 C 0
s chrPic2.chr2                  18523801 1 -  68452538 C
i chrPic2.chr2                 C 0 C 0
e ornAna1.Ultra479               3871811 317 -   6008416 I
e anoCar2.chrUn_GL344195           44405 324 +     59083 I
e colLiv1.KB375358               1019896 48 +   1462937 I
e allMis1.JH737798                 79914 2359 +    106177 I
e macEug2.GL108065                 84006 1294 -    187545 I
e sarHar1.chr5_GL861647_random    319184 1417 -   4230514 I
e monDom5.chr8                 137893861 1569 - 312544902 I
e taeGut2.chr1A                 23692727 0 +  73657157 I

a score=16013.000000
s hg38.chr8_KI270814v1_alt        123334 1 +    141812 C
s panTro4.chr8                  55025818 1 + 143986469 C
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59166406 1 + 153482349 C
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81382023 1 - 104879549 C
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61693357 1 + 150158102 C
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58367191 1 + 146850525 C
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287732 1 + 139301422 C
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33708833 1 + 155834243 C
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4065630 1 +   9144518 c
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1565170 1 -   1847653 C
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1181182 1 -   7152218 C
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                  9505 1 -     34802 C
i camFer1.KB018161             C 0 I 1197
s orcOrc1.KB316915               2916622 1 -  11690531 C
i orcOrc1.KB316915             I 2315 C 0
s equCab2.chr29                 10876281 1 +  33672925 c
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9909024 1 +  34209287 c
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3121904 1 -   3193751 T
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                239177 1 -   2104649 C
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39455513 1 -  55688157 C
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 21977 1 +   6345240 C
i triMan1.JH594766             C 0 C 0
s melGal1.chr1                  24929681 1 + 204065131 T
i melGal1.chr1                 C 0 C 0
s chrPic2.chr2                  18523802 1 -  68452538 C
i chrPic2.chr2                 C 0 C 0
e ornAna1.Ultra479               3871811 317 -   6008416 I
e anoCar2.chrUn_GL344195           44405 324 +     59083 I
e colLiv1.KB375358               1019896 48 +   1462937 I
e allMis1.JH737798                 79914 2359 +    106177 I
e macEug2.GL108065                 84006 1294 -    187545 I
e sarHar1.chr5_GL861647_random    319184 1417 -   4230514 I
e monDom5.chr8                 137893861 1569 - 312544902 I
e taeGut2.chr1A                 23692727 0 +  73657157 I

a score=14972.000000
s hg38.chr8_KI270814v1_alt        123335 1 +    141812 T
s panTro4.chr8                  55025819 1 + 143986469 T
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59166407 1 + 153482349 T
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81382024 1 - 104879549 T
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61693358 1 + 150158102 T
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58367192 1 + 146850525 T
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287733 1 + 139301422 T
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33708834 1 + 155834243 T
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4065631 1 +   9144518 t
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1565171 1 -   1847653 T
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1181183 1 -   7152218 T
i vicPac2.KB632521             C 0 I 1178
s orcOrc1.KB316915               2916623 1 -  11690531 T
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10876282 1 +  33672925 t
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9909025 1 +  34209287 t
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3121905 1 -   3193751 T
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                239178 1 -   2104649 T
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39455514 1 -  55688157 T
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 21978 1 +   6345240 T
i triMan1.JH594766             C 0 C 0
s melGal1.chr1                  24929682 1 + 204065131 T
i melGal1.chr1                 C 0 C 0
s chrPic2.chr2                  18523803 1 -  68452538 C
i chrPic2.chr2                 C 0 C 0
e camFer1.KB018161                  9506 1197 -     34802 I
e ornAna1.Ultra479               3871811 317 -   6008416 I
e anoCar2.chrUn_GL344195           44405 324 +     59083 I
e colLiv1.KB375358               1019896 48 +   1462937 I
e allMis1.JH737798                 79914 2359 +    106177 I
e macEug2.GL108065                 84006 1294 -    187545 I
e sarHar1.chr5_GL861647_random    319184 1417 -   4230514 I
e monDom5.chr8                 137893861 1569 - 312544902 I
e taeGut2.chr1A                 23692727 0 +  73657157 I

a score=29344.000000
s hg38.chr8_KI270814v1_alt        123336 4 +    141812 GCAt
s panTro4.chr8                  55025820 4 + 143986469 GCAt
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59166408 4 + 153482349 GCAT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81382025 4 - 104879549 GCAT
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61693359 4 + 150158102 GCAT
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58367193 4 + 146850525 GCAT
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287734 4 + 139301422 ACAT
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33708835 4 + 155834243 GGAT
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4065632 4 +   9144518 tcat
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1565172 4 -   1847653 CCAT
i otoGar3.GL873762             C 0 C 0
s orcOrc1.KB316915               2916624 4 -  11690531 CCAC
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10876283 4 +  33672925 gcat
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9909026 4 +  34209287 ccat
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3121906 4 -   3193751 CCAT
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                239179 4 -   2104649 TCAT
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39455515 4 -  55688157 CCAT
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 21979 4 +   6345240 CCAt
i triMan1.JH594766             C 0 C 0
s melGal1.chr1                  24929683 4 + 204065131 GCAG
i melGal1.chr1                 C 0 C 0
s chrPic2.chr2                  18523804 4 -  68452538 CCAG
i chrPic2.chr2                 C 0 C 0
e vicPac2.KB632521               1181184 1178 -   7152218 I
e camFer1.KB018161                  9506 1197 -     34802 I
e ornAna1.Ultra479               3871811 317 -   6008416 I
e anoCar2.chrUn_GL344195           44405 324 +     59083 I
e colLiv1.KB375358               1019896 48 +   1462937 I
e allMis1.JH737798                 79914 2359 +    106177 I
e macEug2.GL108065                 84006 1294 -    187545 I
e sarHar1.chr5_GL861647_random    319184 1417 -   4230514 I
e monDom5.chr8                 137893861 1569 - 312544902 I
e taeGut2.chr1A                 23692727 0 +  73657157 I

a score=118133.000000
s hg38.chr8_KI270814v1_alt        123340 16 +    141812 -----aaattaagccaacgtg
s panTro4.chr8                  55025824 16 + 143986469 -----aaattaagccaacgtg
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59166412 16 + 153482349 -----AAATTGAGCCAATATG
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81382029 16 - 104879549 -----AAATTGAgtcaacatg
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61693363 16 + 150158102 -----AAATTGAgccaacatg
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58367197 16 + 146850525 -----AAATTGAgccaacatg
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287738 16 + 139301422 -----AAATTGAGCCAACATG
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33708839 16 + 155834243 -----AAATTTTGTCAACATG
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4065636 16 +   9144518 -----aaattgtgtcaacatg
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1565176 16 -   1847653 -----AAATGCAACGAGTGTG
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1182362 16 -   7152218 -----AAATTGAgtcaagatt
i vicPac2.KB632521             I 1178 C 0
s camFer1.KB018161                 10703 16 -     34802 -----AAATTGAgtcaagatt
i camFer1.KB018161             I 1197 C 0
s orcOrc1.KB316915               2916628 16 -  11690531 -----AAATTGAgtcagcatt
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10876287 16 +  33672925 -----aaattgagtcaacatt
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9909030 16 +  34209287 -----aaattgagtcaacatt
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3121910 16 -   3193751 -----AAATTGAATGaacatt
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                239183 16 -   2104649 -----Aagttgactcaacatt
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39455519 16 -  55688157 -----AGACTAAGCCAACTTT
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 21983 16 +   6345240 -----aaattaagccaacatt
i triMan1.JH594766             C 0 C 0
s melGal1.chr1                  24929687 15 + 204065131 GTCTTGTGTAATGCA------
i melGal1.chr1                 C 0 I 22
s chrPic2.chr2                  18523808 15 -  68452538 GCCTCCTGCGGAGCC------
i chrPic2.chr2                 C 0 C 0
e ornAna1.Ultra479               3871811 317 -   6008416 I
e anoCar2.chrUn_GL344195           44405 324 +     59083 I
e colLiv1.KB375358               1019896 48 +   1462937 I
e allMis1.JH737798                 79914 2359 +    106177 I
e macEug2.GL108065                 84006 1294 -    187545 I
e sarHar1.chr5_GL861647_random    319184 1417 -   4230514 I
e monDom5.chr8                 137893861 1569 - 312544902 I
e taeGut2.chr1A                 23692727  0 +  73657157 I

a score=887752.000000
s hg38.chr8_KI270814v1_alt        123356 209 +    141812 taaaattt---------------------------------------------------------------------------------------------ag-gaga--cctgc---aaaaatctgtatttcaggctcctc-ttaaatagtgaaatctggtttcccttgagcccatattactgtttggtgtg----ctatgaaga----------ggctg---------ta-gctt-cacgcaaagtctgtg-gtctccagtttgccattgtgcccacctaggg-----acttactcagg----------tcataccctttgcctctgtaaatat--tttagttaacaact
s panTro4.chr8                  55025840 209 + 143986469 taaaattt---------------------------------------------------------------------------------------------ag-gaga--cctgc---aaaaatctgtatttcaggctcctc-ttaaatagtgaaatctggtttcccttgagcccatattactgtttggtgtg----ctatgaaga----------ggctg---------ta-gctt-cacgcaaagtctgtg-gtctccagtttgccgttgtgcccacctaggg-----acttactcagg----------tcataccctttgcctctgtaaatat--tttagttaacaact
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59166428 208 + 153482349 TAAAATTT---------------------------------------------------------------------------------------------AG-GAGA--ACTGC---AAAACTCTGTATTTCAGGCTCCTC-TTAAATAGTGAAATCTGGTTTCCCTTGAGCCCATA-TGCTGTTTGGTATg----ctatgaaga----------ggctg---------ta-gctt-cacacaaagtctatg-gtctccagtttgccgctgtgcccacctaggt-----acttactcagg----------tcacatcctttgcctctgtaaatat--tttagttaacaact
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81382045 207 - 104879549 taaaattt---------------------------------------------------------------------------------------------ag-gaga--catgc---agaaatctggatt------tcctc-ttaaaggattgaatctggtgtctcttgagcccatatgactgtttggtatg----ctatgaaga----------cagtc---------ta-actt-tacacaaagcatat--gtttccagtttgctactgtgcccacctagttacatcacttactcaac----------ttacctcttttgcctctgtaaatat--ttcagttatcaatt
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61693379 209 + 150158102 taaaattt---------------------------------------------------------------------------------------------ag-gaga--catgc---aaaaatctgtatttcaggctcttc-ttaaataatgaaatctggtttcccttgagcccatattactgtttggtaTG----CTATGAAGA----------GGCTA---------TA-GCTT-CACGCAAAGTCTGTG-GTCTCTAGTTTCCCACTCTCCCCACCTAGGT-----ACTAACTCAGG----------TCACATCCTTTGCCTCTGTAAATAT--TTTAGTTAACAACT
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58367213 209 + 146850525 taaaattt---------------------------------------------------------------------------------------------ag-gaga--catgc---aaaaatctgtatttcaggctcttc-ttaaataatgaaatctggtttcccttgagcccatattactgtttggtatg----ctatgaaga----------ggcta---------ta-gctt-cacgcaaagtctgtg-gtctctagtttcccactctccccacctaggt-----actaactcagg----------tcacatcctttgcctctgtaaatat--tttagttaacaact
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53287754 302 + 139301422 TAAAATTTACATAACAGGTATTCAGTTTATATTTGATGAATACATATTTTAAAAATGAATAAATGCAGTTGGGAAGTTTAATATTTTAAAAACAGATACAAAg-gaga--catgc---aaaaatctgtatttcaggctcttc-ttaaataatgcaatctggtttcccttgagcccatattactgtctggtatg----ctatgaaga----------ggctg---------ta-gctt-cacgcaaagtctgtg-gtctccagtttgccactgtgcccacctaggc-----acttactcagg----------tcacatcctttgcctctgtaaatat--tttagttaacaact
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33708855 208 + 155834243 TTAAATTT---------------------------------------------------------------------------------------------AG-GAGA--AGGGC---AGAAATCTGAATT------TCCTC-TTAAAGGATAGAATCTGATGTCTCTTGAGCCCATATGACTGTTTGGTACT----CTATGAAGA----------GGTTC---------TA-GGTT-TACCCAGAGC--ATG-TTTTCCAGGTTGTTACTGTGCCCTGCTAGGTACATCACTTACTCAAG----------TTACCTCTTTTGCCTATGTAAATATCTCTTAGTTATCAATT
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4065652 206 +   9144518 taaaattt---------------------------------------------------------------------------------------------ag-gagactaatac---acaaatctggattttaggcttctc-tt-aagcatcagatctggtgtcccgtgagctcatatcactgtttggtctg----ttgtgcaga----------ggttg---------cc-cctt-tctatgaggcctgtg-ttctccagtttgctgtggtgcccatctaggcacctccctt----agg----------ccaccccctttgcccttgtaagcat-------ttgaCAACT
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1565192 213 -   1847653 TGAAATTT---------------------------------------------------------------------------------------------AG-GAGA--CATGC---AGCaatctggaattcaggcttctc-ttaaagaatccagtctggtgtctcttgagtccatcttacagtttggtgtg----a-gtgcaga----------cgctg---------cc-cttc-gttaggaagcacctg-ttctccagttttctatggtgcccacctatgtacttcacctatgtggg----------tcaagtactttgccgctgtaagtac--ttgagtttatagct
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1182378 214 -   7152218 tagaattt---------------------------------------------------------------------------------------------ag-gagactcatgc---agaaatctgcatttcaagcttctc-ataaagaatcaaatctgatcccccttgagcccaggctcctgtgtggtctg----ccttgcaga----------ggtgg---------cc-ccttctcagtggggcgtgtg-ttctccggtttgct---gtccgcagctgggaccttcgcttactcggg----------tcacctgcgttgcctctgtaagcat--ttgagattatgatt
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                 10719 214 -     34802 tagaattt---------------------------------------------------------------------------------------------ag-gagactcatgc---agaaatctgcatttcaaacttctc-ataaagaatcaaatctgatcccccttgagcccaggctcctgtgtggtctg----ccttgcaga----------ggtgg---------cc-ccttcttagtggggcgtgtg-ttctctggtttgct---gtcctcacctgggaccttcgcttactcggg----------tcacctgcgttgcctctgtaagcat--ttgagtttatgatt
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2916644 212 -  11690531 taaaattt---------------------------------------------------------------------------------------------ag-gagactcatgc---agaaatctgcatttcaggcttctc-ttaaggaatccaatctggtcccccttgagcccatgctgctgtttggtctg----ccgtgcaaa----------gggtg---------cc-ccttct--gtatggtgcgcg-ttctccggtttgct---ggcctcacctgggttcttcacttacttggg----------tcacctactttgcctccataagcat--ctgtgtttccagtt
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10876303 217 +  33672925 tacaattg---------------------------------------------------------------------------------------------ag-gagactcatgc---agaaatctggatttcaagcttctc-ttcaagaaccgcatctggtgccctgtgagcccacactactgtttggggtg----ccgtgcagt----------ggctc---------cc-cctctcatctgacgcacttg-gtctccagtttgctgccgtccctgcttaggctctttatggacctggg----------tcacctactctgcctctgtaagcat--ttgagtttCCATGT
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9909046 216 +  34209287 tgaaattg---------------------------------------------------------------------------------------------ag-gagacccatgc---agaaatctggatttcaagcttctc-ctcaagaaccgcatctggtgccccg-gagcccatactgctgtctgggagg----ctgtgcaga----------ggctg---------cc-cctcttatacgaggcccctg-ttttccagtttgctgctgtccccacctgggctcttcactgactcggg----------tcgccgactctgcctctgtaaccat--ttgagtttccaagt
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3121926 224 -   3193751 taaaattt---------------------------------------------------------------------------------------------ag-gagactcatgt---agaaatctagatttc-agtttctc-ttaaagagtcaaacctgta--cccttgagcccatcgtactgtttggtgtg----ctgtgctga----------ggctg---------cc-ccttttgtgtgagacctgtg-ttctctagtttgctgctgtctccatctagtttcttcccttacttggtcccgtttggatcacttactttgcctctataagcat--tagagttcacgatt
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                239199 217 -   2104649 aaaatttt---------------------------------------------------------------------------------------------ag-aagactcttgt---agaaatctgaacttcaagcttctc-ttatagaatcaaatctggcatcccataagcccccactgctttttggtatg----ctgtgcaga----------ggctg---------cc-cctagcatttgaaacatgtg-ttctctagtttgctgccgtcctcacctagattcttcacttacttggc----------tcacctactttgcctccataagcgc--ttgagtttacaatt
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39455535 145 -  55688157 TAAAATTT---------------------------------------------------------------------------------------------AG-GAAACTCACGT---AGAAATCTa-----------------------------------------------------------------------------ga----------gactg---------ctccctt-tatacagggtatgtg-ttctccagtttgctactcttaccatccagacacttcacttactcaga----------ttacctagcccatcttagtaaacat--tcaagtttacaact
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 21999 138 +   6345240 taagattt---------------------------------------------------------------------------------------------ag-gagacttacat---agaaatctg-----------------------------------------------------------------------------ga----------gactg---------ct-cctt-aatacaaggtatgtg-ttctccagtttgctactgtt-ccacctaga-----tacttactcaga----------tcacctaccccaccttcgtaaatat--tcaagtttacaaat
i triMan1.JH594766             C 0 C 0
s colLiv1.KB375358               1019944 180 +   1462937 -ggaacCA---------------------------------------------------------------------------------------------CACGGAA----------AGAGCTATCTCT-----GTGTGAC-TTTTGAAAGCAGGTCTG----CACTTG----------ACTGC-TGTCATA----CCTCAGTGGATGCTTTCTGCATTG------AGTTT-GCAAGAAGGCATTGGCTGTG-ATGGCCCTTCTGGCAGG------AAACGTGC-CATTAGCTC----AG----------CAGCGT----TGCctca------at--ttga--aaaaaaat
i colLiv1.KB375358             I 48 I 2
s melGal1.chr1                  24929724 187 + 204065131 -AGAACTG---------------------------------------------------------------------------------------------CA-AGAA----------AGCATTGTTTAT-----GATAGCCACTGTGGCAGGAAATTTG----CCATTGTGCCAGCAACATTGC-TGCTATG----CCATAGAGA--GTTTTTCAAATTGACGCATAGTTT-GTATGCAAGTGTTGTTAATGTATAAACTTTTT---------------------CTTCAGTTCATAAAG----------TGATTT----TGTTTTT------CT--TTGAGTGAGCAAAT
i melGal1.chr1                 I 22 N 0
s chrPic2.chr2                  18523823 188 -  68452538 -AGAACTT---------------------------------------------------------------------------------------------TG-GGGGCCCTGGCCTCAGCAGTCTCTGT-----GATCCCT-CCCAGGAGTACTGTGTG----GCCTGGAGCCCTACACATAAT-TTTCCTGAGGCCAGTAAAGA----------GACTG------AATTT-GGTT-----CCTTATTCCTG-GTTACATTTTC--CAAGTTTCTTATTTGTGC-TACCAGCTCCTTATG----------TGATTTCCAGTTCCTTA------CT----------------
i chrPic2.chr2                 C 0 C 0
e ornAna1.Ultra479               3871811 317 -   6008416 I
e anoCar2.chrUn_GL344195           44405 324 +     59083 I
e allMis1.JH737798                 79914 2359 +    106177 I
e macEug2.GL108065                 84006 1294 -    187545 I
e sarHar1.chr5_GL861647_random    319184 1417 -   4230514 I
e monDom5.chr8                 137893861 1569 - 312544902 I
e taeGut2.chr1A                 23692727   0 +  73657157 I

a score=553656.000000
s hg38.chr8_KI270814v1_alt        123565 101 +    141812 cctgTCATATAGTATATTTTGGTAAAGATTTCAAGG-TTTTC---AAGACA--GTTGATAGTTATTTATAAT--ATATAGC----------------CTATATTTTGTATTAATTC------CTTAATAAT
s panTro4.chr8                  55026049 101 + 143986469 cctgTCATATAGTATATTTTGATAAAGATTTCAAGG-TTTTC---AAGACA--GTTGATAGTTATTTATAAT--ATATAGC----------------CTATATTTTGTATTAATTC------CTTAATAAT
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59166636 101 + 153482349 cctgTCATATAGTATATTTTGGTAAAGATTTCAAGG-TTTTC---AAGACA--GTTGATAGTTATTTATAAT--ATATAGC----------------CTATATTTTGTATTAATTC------CTTAGTAAT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81382252 101 - 104879549 cctCTCTCATAGTATATTTTGGTAAAGATTTCAAGT-TATTG---AAGACA--GTTTATAGGTGTTTTTAAT--ATATAGT----------------TTATATTTTACATTAATTC------ATTAATAAT
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61693588  96 + 150158102 CCTGTCATATAGTATATTTTGGTAGAGATTTCAAGG-TTTTC---AAGATA--GTTGATAGCTGTTTATTAT--ATATAGT----------------ATATATTTTGT----AGTC------CTTAATAA-
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58367422  97 + 146850525 cctgTCATATAGTATATTTTGGTAGAGATTTCAAGG-TTTTC---AAGATA--GTTGATAGCTGTTTATTAT--ATATAGT----------------ATATATTTTGT----AGTC------CTTAATAAT
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53288056  97 + 139301422 cctgTCATATAGTATATTTTGGCAAAGATTTCAAGG-TTTTC---AAGACA--GTTGATAGCTGTTTATTAT--ATATAGT----------------GTATATTTTAT----AGTC------CTTAATAAT
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33709063 101 + 155834243 TCTCTCTCATAGTATATCTTAGTAAAGATTTCAAGG-TATTG---AAGACA--GTTGATAGGTATTTATAGT--ATACAGC----------------TTATATTTTACTTTAATTC------ATTAATAAT
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4065858 101 +   9144518 CTTATCTTACGGTATATTTTGATAAAGATGTCAAGG-CTTTC---AAGACA--GTTTCTATTTGTTTATAAT--ATAGAAT----------------CTGTATTTTATATAAATCC------CTTGGCATT
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1565405 118 -   1847653 cttgTTTTATAGTGTATTATGATAAAGATTTCAAGGTTTTTC---AAGATA--ATTTACAGGTTTTTATAAT--ATGTAGTATTATATTATTATATACTATATTGTGTACAAATCT------CTTAGTAAT
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1182592  97 -   7152218 tctgTTTTACAGTGTATTTTGATAAATATTTCAAGA-TTTTA---AAGACA--GT--ATATTAATTAATAAC--CTATTTC------------------TTATTTTATAATAATCT------CTTAAGAAT
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                 10933  97 -     34802 tctgTTTTACAGTGTATTTTGATAAATATTTCAAGA-TTTTA---AAGACA--GT--ATGTTAATTAATAAC--CTATTTC------------------TTATTTTATAATAATCT------CTTAAGAAT
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2916856  95 -  11690531 cctgTATTACAGTTTATTTTGATAAATATTTCTAGA-TTTTA---AA-ACA--GT---CATTAATTTATAAT--CTATTTC------------------ATATTTTAAAAGAATCT------CTTAAGAAT
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10876520  91 +  33672925 CCTGTGT-------TTTTTTAATAAAGATTTCAAGA-TTTTT---GAGGCA--GTTAAAATTA---TAGGGT--TTTTTCC----------------CCTTATTTTATGTTAATCT------CTTAAGAAT
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9909262  93 +  34209287 cctgttttataatatattttaataaaGACCTCAACA-TTTTC---AAGACA--GTCTGTATTAATTTATAAT--TTTTTTC----------------ATAT--------CTAATCT------CTTAAGAAT
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3122150  94 -   3193751 cctgTTTTATAGTACATTTTGGTAAAGATTTCAAGA-TTTTC---AAGGTA--GTCTATGTTGATTTATAAT--TT-----------------------ATATTTTATATTAATCT------CTGAGAAAT
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                239416  81 -   2104649 cctATTTTATA------------AAAGACTTCAAGA-TATTC---AAGATC--ATCTACattaatttataat--at-----------------------atattttatattaatCT------CC-AGGAAT
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39455680  99 -  55688157 cctgTTTTATAGGATACTTTGATAAAG--GTTAAAG-TTTTC---AAGAGA--GCttattttaacttataat--atatagt----------------ttatattttatattaattc------tttaaaaat
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 22137 101 +   6345240 cctgTTTTATAGGCTGTTTTGATAAAGACATTAAAG-TTTTC---AAGAAA--GCTTATATTAACTTATAGT--ATATAGC----------------TCATATTTTATATTAATCC------CTTAGAAAT
i triMan1.JH594766             C 0 C 0
s colLiv1.KB375358               1020126 103 +   1462937 cctgtgCAGCAGCATAAG-TGTTGTCTATGTGGAAG-CTCTGTGTGAAG----ATTGAACTTTTGTTTTGAC--TTCCTCT----------------CCcgttttgct-gttgtttttagtACTTAAT---
i colLiv1.KB375358             I 2 I 3
s chrPic2.chr2                  18524011 101 -  68452538 CCAAGGCCAAAAAATTAC-TTAGAAATATATTAAAT-TTTTA---GAAATGTCATCAAATTAATATTGTGATAAATAAATT----------------CCTGTTTTCttaattgttt------attaat---
i chrPic2.chr2                 C 0 N 0
e ornAna1.Ultra479               3871811 317 -   6008416 I
e anoCar2.chrUn_GL344195           44405 324 +     59083 I
e allMis1.JH737798                 79914 2359 +    106177 I
e macEug2.GL108065                 84006 1294 -    187545 I
e sarHar1.chr5_GL861647_random    319184 1417 -   4230514 I
e monDom5.chr8                 137893861 1569 - 312544902 I
e taeGut2.chr1A                 23692727   0 +  73657157 I

a score=153299.000000
s hg38.chr8_KI270814v1_alt        123666 27 +    141812 ----GGGTTTGACTTTTAGAATTTAGAAGTT
s panTro4.chr8                  55026150 27 + 143986469 ----GGGTTTGACTTATAGAATTTAGAAGTT
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59166737 27 + 153482349 ----GGGGTTGACTTTTAGAATTTAGAAGTT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81382353 25 - 104879549 ----AGGGTTGTCTTCTAGAATTTAGAA--T
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61693684 26 + 150158102 ----GGAGTTGACTTTTAGAATTTAGAAGT-
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58367519 26 + 146850525 ----GGAGTTGACTTTTAGAATTTAGAAGT-
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53288153 26 + 139301422 ----GGAGTTGACTTTTAGAATTTAGAAGT-
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33709164 26 + 155834243 ----GGGATTGATTTCTAGAATTGAGGATT-
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4065959 26 +   9144518 ----GGGGTTGAATTCTAAAATTTATAAGT-
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1565523 26 -   1847653 ----GGGATTGAATTGTAGAATTTAGAAGG-
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1182689 26 -   7152218 ----GGGATGGAATTTTTCAAATCAGAATT-
i vicPac2.KB632521             C 0 I 8
s camFer1.KB018161                 11030 26 -     34802 ----GGGATGGAATTTTTCAAATCAGAATT-
i camFer1.KB018161             C 0 I 8
s orcOrc1.KB316915               2916951 26 -  11690531 ----GGGATTGAAATTTTCAAGTTAGACTT-
i orcOrc1.KB316915             C 0 I 8
s equCab2.chr29                 10876611 25 +  33672925 ----GGGATT-CATTTTCCAAATTAGAATT-
i equCab2.chr29                C 0 I 6
s cerSim1.JH767738               9909355 26 +  34209287 ----GAGATTGAATTTTCCAAGTTAGAATT-
i cerSim1.JH767738             C 0 I 6
s pteAle1.KB031146               3122244 25 -   3193751 ----AGGATTGAATTTTTCCAG-TAGAATT-
i pteAle1.KB031146             C 0 I 8
s myoLuc2.GL429990                239497 26 -   2104649 ----GGAATGGAATTTTTCAAGTTAGAATT-
i myoLuc2.GL429990             C 0 I 12
s loxAfr3.scaffold_15           39455779 26 -  55688157 ----GAGATTTAATTTTTCAAGTTAGAATT-
i loxAfr3.scaffold_15          C 0 I 8
s triMan1.JH594766                 22238 26 +   6345240 ----GGGATTTAATTTTTCAAGTTAGAATT-
i triMan1.JH594766             C 0 I 8
s colLiv1.KB375358               1020232 30 +   1462937 AACCactatttttttgttcattttgaagTA-
i colLiv1.KB375358             I 3 C 0
e ornAna1.Ultra479               3871811 317 -   6008416 I
e anoCar2.chrUn_GL344195           44405 324 +     59083 I
e allMis1.JH737798                 79914 2359 +    106177 I
e macEug2.GL108065                 84006 1294 -    187545 I
e sarHar1.chr5_GL861647_random    319184 1417 -   4230514 I
e monDom5.chr8                 137893861 1569 - 312544902 I
e taeGut2.chr1A                 23692727  0 +  73657157 I

a score=3519.000000
s hg38.chr8_KI270814v1_alt        123693 3 +    141812 GTT
s panTro4.chr8                  55026177 3 + 143986469 GTT
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59166764 3 + 153482349 GTT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81382378 3 - 104879549 ATT
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61693710 2 + 150158102 -TT
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58367545 2 + 146850525 -TT
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53288179 2 + 139301422 -TT
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33709190 2 + 155834243 -TT
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4065985 2 +   9144518 -TT
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1565549 2 -   1847653 -GT
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1182723 3 -   7152218 GGT
i vicPac2.KB632521             I 8 C 0
s camFer1.KB018161                 11064 3 -     34802 GGT
i camFer1.KB018161             I 8 C 0
s orcOrc1.KB316915               2916985 3 -  11690531 TTT
i orcOrc1.KB316915             I 8 C 0
s equCab2.chr29                 10876642 3 +  33672925 GGT
i equCab2.chr29                I 6 C 0
s cerSim1.JH767738               9909387 3 +  34209287 GTT
i cerSim1.JH767738             I 6 C 0
s pteAle1.KB031146               3122277 2 -   3193751 -TT
i pteAle1.KB031146             I 8 I 4
s loxAfr3.scaffold_15           39455813 3 -  55688157 GAT
i loxAfr3.scaffold_15          I 8 C 0
s triMan1.JH594766                 22272 3 +   6345240 GGT
i triMan1.JH594766             I 8 C 0
s colLiv1.KB375358               1020262 1 +   1462937 A--
i colLiv1.KB375358             C 0 C 0
e myoLuc2.GL429990                239523 12 -   2104649 I
e ornAna1.Ultra479               3871811 317 -   6008416 I
e anoCar2.chrUn_GL344195           44405 324 +     59083 I
e allMis1.JH737798                 79914 2359 +    106177 I
e macEug2.GL108065                 84006 1294 -    187545 I
e sarHar1.chr5_GL861647_random    319184 1417 -   4230514 I
e monDom5.chr8                 137893861 1569 - 312544902 I
e taeGut2.chr1A                 23692727 0 +  73657157 I

a score=-17800.000000
s hg38.chr8_KI270814v1_alt        123696  4 +    141812 T-----------------------------------------------------------TTT
s panTro4.chr8                  55026180  4 + 143986469 T-----------------------------------------------------------TTT
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59166767  4 + 153482349 T-----------------------------------------------------------TTT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81382381  4 - 104879549 T-----------------------------------------------------------TTT
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61693712  4 + 150158102 T-----------------------------------------------------------TTA
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58367547  4 + 146850525 T-----------------------------------------------------------TTA
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53288181  4 + 139301422 T-----------------------------------------------------------TTA
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33709192  1 + 155834243 T--------------------------------------------------------------
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4065987 63 +   9144518 TTAAAAAGCTGATAAATTCTATATTCTTTTTATTTATGGTACATATTCTTTATATTTAATGTA
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1565551  4 -   1847653 T-----------------------------------------------------------TTA
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1182726  4 -   7152218 T-----------------------------------------------------------TTT
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                 11067  4 -     34802 T-----------------------------------------------------------TTT
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2916988  4 -  11690531 T-----------------------------------------------------------TTA
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10876645  4 +  33672925 T-----------------------------------------------------------TTT
i equCab2.chr29                C 0 I 1
s cerSim1.JH767738               9909390  4 +  34209287 T-----------------------------------------------------------TTT
i cerSim1.JH767738             C 0 I 269
s pteAle1.KB031146               3122283  4 -   3193751 T-----------------------------------------------------------TTT
i pteAle1.KB031146             I 4 C 0
s myoLuc2.GL429990                239535  4 -   2104649 T-----------------------------------------------------------TTT
i myoLuc2.GL429990             I 12 C 0
s loxAfr3.scaffold_15           39455816  4 -  55688157 T-----------------------------------------------------------TTT
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 22275  4 +   6345240 T-----------------------------------------------------------TTC
i triMan1.JH594766             C 0 C 0
s colLiv1.KB375358               1020263  2 +   1462937 ------------------------------------------------------------TT-
i colLiv1.KB375358             C 0 C 0
e ornAna1.Ultra479               3871811 317 -   6008416 I
e anoCar2.chrUn_GL344195           44405 324 +     59083 I
e allMis1.JH737798                 79914 2359 +    106177 I
e macEug2.GL108065                 84006 1294 -    187545 I
e sarHar1.chr5_GL861647_random    319184 1417 -   4230514 I
e monDom5.chr8                 137893861 1569 - 312544902 I
e taeGut2.chr1A                 23692727  0 +  73657157 I

a score=1235642.000000
s hg38.chr8_KI270814v1_alt        123700 167 +    141812 AAATAATGA-TTTTTCTTTATATATAC-CATAAATAATAATC--AC---ATTGGAATGCCTATAGGCCTTTTTAGGTTAATTATGGTTATATTTGGATAGGTTATGCATATTGCAGAACACATTTTATCTTTCTCCTCAGCATTGTCTCTGA-AAATGGAAG--TGATTTAGTG-----GCT
s panTro4.chr8                  55026184 167 + 143986469 AAATAATGA-TTTTTCTTTATATATAC-CATAAATAATAATC--AC---ATTGAAATGCCTATAGGCCTTTTTAGGTTAATTATGGTTATATTTGGATAGGTTATGCATATTGCAGAACACATTTTATCTTTCTCCTCAGCATTGTCTCTGA-AAATGGAAG--TGATTTAGTG-----GCT
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59166771 167 + 153482349 AAATAATGA-TTTTTCTTTATATATAC-CATAAATAACAATC--AC---ATTGGAATGCCCATAGGCCTTTTTAGGTTAATTATGGTTATATTTGGATAGGTTATGCATACTGCAGAACACATTTTATCTTTCTCCTCAGCATTGTCCCTGA-AAATGGAAG--TGATTTAGTA-----GCT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81382385 169 - 104879549 AAATGATGA-TTTTTCTTCATATAAAA-CATAAATAATTATCTTCT---ATTAGAAGGCCTTTAAGCCTTTTTAGATTAATCATGGTTATATTTGAATAGGTTATGTATATTGCAGAAAATATTATATCTTTCTCCACAGAATTGTCCCTTA-AAATTCAAG--TGATTTAGTG-----GCT
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61693716 167 + 150158102 AAACAATGA-TTTTTCTTTATATATAC-CATACATAATAATC--AC---ATTAGAAGGCCTATAGGCTTTTTTAGGTTAATTATGGTTATATTTGGATAGGTTATGCATATTGCAGAACACATTATATATTTCTCCTCAGCATTGTCCCTTA-AAATGGAAG--TGATTTAGTG-----GCT
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58367551 167 + 146850525 AAACAATGA-TTTTTCTTTATATATAC-CATACATAATAATC--AC---ATTAGAAGGCCTATAGGCTTTTTTAGGTTAATTATGGTTATATTTGGATAGGTTATGCATATTGCAGAACACATTATATATTTCTCCTCAGCATTGTCCCTTA-AAATGGAAG--TGATTTAGTG-----GCT
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53288185 166 + 139301422 AAACAATGA-TTTTTCTTTATATATAC-CATACATAATAATC--AC---ATTAGAAGGCCTATAGGC-TTTTCAGGTTAATTATGGTTATATTTGGATAGGTTATGCATATTGCAGAACACATTATATATTTCTCCTCAGCATTGTCCCTTA-AAATGGAAG--TGATTTAGTG-----GCT
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33709193 169 + 155834243 AAACAATGA-TTTTTCTTTACATAAAC-CATAAATAATCATC--TTCT-ATTAGAACGACTTTAAGTCTTTTTAGATTAATCATGATTATATTTGAATAGGTTATGCATACTGCAGAAAATATTATATCTTTCTTCTCAGAATTGTTAGTTA-AAATTCAAG--TGATTTAGTG-----GCT
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4066050 154 +   9144518 AGATAACTC-TTATTCTTTATATTTGC-CGTAAATAAGCACC--TTCTCATTTGCATGCCTGTAAGTCTTTCTAG-----------------CTGGATGTGTTATGCATATTGCAGACAACATTATATCTTTCTCTTCAGCATCATTCCTTAGAAATGCAAG--TGATTTAGTG-----ACT
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1565555 166 -   1847653 TTTTAA-GC-TTTTTCTTTATATGTAC-CATAAGCAGACACC--TTCCTATCAGAATGCCTATGCACCTGTTTAGGCTAATCATGGTTATAATTTGGTATGTTGTGCATATTGCAGATAACTTTGTATTGT----CTCAGCATTGTCCCTCAAAAATGCAAG--TGACTCAGTA-----GAT
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1182730 173 -   7152218 AAAAAACTCATTTTTCTTTACACGTACATGTAAATAATCATA--TTCCCATTGGAATGTCAGCAAACCTTATGAGGTTAGTCATGGTTATAGTTGGATAGGTTACGTATATTACAGACAATATTATATCTTCCTCCTGAGCGTGGTTCCTTAAAAATGCAAT--AGATTCAATA-----GCT
i vicPac2.KB632521             C 0 I 50
s camFer1.KB018161                 11071 173 -     34802 AAAAAACTCATTTTTCTTTACACGTACATGTAAATCATCATA--TTCCCATTGGAATGTCAGCAAACCTTATGAGGTTAGTCATGGTTATAGTTGGATAGGTTATGTATATTGCAGACAATATTATATCTTCCTCCTCAGCGTGGTTCCTTAAAAATGCAAT--AGATTCAATA-----GCT
i camFer1.KB018161             C 0 I 50
s orcOrc1.KB316915               2916992 170 -  11690531 AAAAAACTC-TTTTTCTTTACATGTTCATGTGAAGAATCATA--TTCCCATTGGAATGTCTGTAAACTTTATGAGGTTAAT--TGGTTATCGTTGGATAGGTTATGCATGTTGCAGACAATATTATATCTTTCTCCTCAGCATTGTTCCTAAAATATGCAGT--TGATTTAATA-----GTT
i orcOrc1.KB316915             C 0 I 42
s equCab2.chr29                 10876650 165 +  33672925 --ACAAAGC-TTTATCTTTATATGGAC-TATAAATAATTGTA--TTCCCATTGGAATGTCTGTAAGCCTTGTGAGGTTAATCATGGTTAGAGCTGCATAGGTTATGCGTATTGCAGACAATATTA----TGTCTTCTCAGCATTGTTCCTGAAAAATGCAAG--TGACTTAGTA-----GCT
i equCab2.chr29                I 1 C 0
s cerSim1.JH767738               9909663 169 +  34209287 ataaaaaaC-TTATTCTTCATATGTAC-TGTAAATAATTGTA--TTCCCATTGGAATGTCTGTGAGCCTTATGAGGTTAATCATGGCTGTAGTCGGATAGGTTATGCACATTGCAGACAATATGA--TTTTTCTTCTCAGCCTTGTTCCTTAAAAATGCAAG--TGATTTAGTA-----GCT
i cerSim1.JH767738             I 269 C 0
s pteAle1.KB031146               3122287 162 -   3193751 TTTAAACTC-TT---CTTTGTATGTCC-TATAAAT-ATCATA--TTCCTATTGGAATGTCCATAAGTCTTATGTTGTTAATCAT-GGTATAGTTGGATAGGTTATCTATATTTCAGACTATAC----TTTTTCTACTCAGCATTGTTCCTTGAAAATACAAG--AGATTTAGTA-----GCT
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                239539 159 -   2104649 AAAAAACTC-TTTTCCTTTATATGTCC-TGTAAATAATCATA--TTCTCATTGGAATGTCTATACGTATCATG------------GTTAGAGTTGTATAGGGGATGCATATTCCAGACTATATTATATCTTTCTTCTCAGCATTGTTCCTCAGAAATACAAG--TGATTTAGTA-----GCT
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39455820 145 -  55688157 --AAGA---------CTCTATA--TAC-TATTAATAGTTATA--TTGTCATTGGAATGTCTGTAAGTGTTATTAGATTAATCATGGTTATAGTTGGATGGGTTGTGGATATTACGGACAATA-----TCTTTCTCCTCAGCATTGCCCCCTAAAAATGC-----------AGTG-----GCT
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 22279 162 +   6345240 --AAAAGAT-GTTTTCTTTATATTTGC-TATTAATAATTGTA--TTCTCATTGGAATGTC--TAAGTGTTACTAGATTAATCATAGTTATAGTTGGATGGGTTATCTGTATTGCAGACAATA-----TCTTTCTCCTTAGCATTGTCCCCTAAAAATGCCAA--TGATTTAATG-----GCT
i triMan1.JH594766             C 0 C 0
s colLiv1.KB375358               1020265 149 +   1462937 GGACAATAC-TATTTTTTGAGAGCgaa-taggaataaaaata-------attacagtgtCTGTG-------TGAAAGGATCtatttttttatc-----atattttgGATGTTTCAGAACA------------CCACTTATGATTGCTGCTTCTGATGGGGAGCTTAACTTGGTAAAGGTGCT
i colLiv1.KB375358             C 0 C 0
e ornAna1.Ultra479               3871811 317 -   6008416 I
e anoCar2.chrUn_GL344195           44405 324 +     59083 I
e allMis1.JH737798                 79914 2359 +    106177 I
e macEug2.GL108065                 84006 1294 -    187545 I
e sarHar1.chr5_GL861647_random    319184 1417 -   4230514 I
e monDom5.chr8                 137893861 1569 - 312544902 I
e taeGut2.chr1A                 23692727   0 +  73657157 I

a score=417407.000000
s hg38.chr8_KI270814v1_alt        123867  84 +    141812 --TTTAT---------------TATGCTA---AAATAACCCATATAGTT-------------CAG---CTAGAAATTGTATTGATAAGCCATTGCA-TTTGTATTTCTG------A----TATTTTGCCAA
s panTro4.chr8                  55026351  84 + 143986469 --TTTAT---------------TATGCTA---AAATAACCCATATAGTT-------------CAG---CTAGAAATTGTATTGATAAGCCATTGCA-TTTGTATTTCTG------A----TATTTTGCCaa
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59166938  84 + 153482349 --TTTAT---------------TAGGCTA---AAATAACTGATATAGTT-------------CAG---CTAGAAATTGTATTGATAAGCCATTGCA-TTTGTATTTCTG------A----TATTTTGCCaa
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81382554  79 - 104879549 --TCTAT---------------TTTGC--------TAATCCATATACAT-------------GAG---TTAGAACTTTCATTAATAAGCCTTTTTA-TTCATACTTCCG------A----TATTTTGCCAA
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61693883  84 + 150158102 --TTTAT---------------TATGCTA---AAATAACCCATATAGTT-------------CAG---CTAGAAATTGTATTGATAAGCCATTGCA-TTTGTATTTCTG------A----TATTTTGCCAA
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58367718  84 + 146850525 --TTTAT---------------TATGCTA---AAATAACCCATATAGTT-------------CAG---CTAGAAATTGTATTGATAAGCCATTGCA-TTTGTATTTCTG------A----TATTTTGCCaa
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53288351  84 + 139301422 --TTTAT---------------TATGCTA---AAATAACCCATATAGTT-------------CAG---CTAGAAATTGTATTGATAAGCCATTGCA-TTTGTATTTCTG------A----TATTTTGCCaa
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33709362 100 + 155834243 --TCTATATGTAGCCACTTCTATATGTAA--TGGCTAACATACGTAGGT-------------AAG---TTAGAACTTTCACTAATAAGCCATTTTA-GTCATATTTCTG------A----TTTTTTGCCAA
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4066204  88 +   9144518 --TCCAT---------------CATGATA--GGGATAG-ATAGAGCAGT-------------AGG-----AGAACTTTTAATGATAAGCCATTGTA-TTTTTATTTCTGATTCATA----TTTTTTCCTAA
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1565721  91 -   1847653 --TTCAT---------------CATGCTA--GAAATACCCCACATAGAT-------------CAG-TGTTAGAAGTTTCATTGATGCTTTACTGTA-CTTACACTTCTG------ATTTCTATTTTGCCTA
i otoGar3.GL873762             C 0 C 0
s equCab2.chr29                 10876815  87 +  33672925 --TTCAT---------------TATGCTA--AAAATAATCCGTATAGAT-------------CAGTTATTAGAATTTTTATTGATAAGCCA------TTTTTATTTCTG------ATTTATATTTTGCCGA
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9909832  93 +  34209287 --TTTAT---------------TATGCTA--AAAATAATCCATATAGAT-------------CAGTTATTAGAGTTTTTGTTGATAAGCCATTATATTTTTAATTTCTG------ATTTATATTTTGCTGA
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3122449  91 -   3193751 --TTGTT---------------TATGCTA--AAAATAATCCGTATAGAT-------------CAC-TATTGAAATGTTTATTGATAAGCCATTATA-TTTTTATTTATG------ATTTATATTTTTCCCA
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                239698  91 -   2104649 --TTCAT---------------TGTGCTA--AAAATAATTTATATAGAT-------------CAG-TGTTAAACTTTTCATTGAAAAGCCATTATA-TTTTTGCTTCTG------ATTTATATTTTGCCTC
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39455965  91 -  55688157 --TGCAT---------------TATGCTA--AAAATGATCTGTGTAGAT-------------CAT-TATTGGAATTTTTATTGGTTAGCCATTATA-TTTTAAATTCTG------ATGTATATTTTGCCTa
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 22441  91 +   6345240 --TTTAT---------------TATGATA--AAAATAATCTGTATAGAT-------------CAG-TATTGGAATTTTTATTGGTTAGCCATTGTA-TTTTAAATTCTG------ATGTATATTTTGCCTa
i triMan1.JH594766             C 0 C 0
s colLiv1.KB375358               1020414  96 +   1462937 TCTTCGG---------------TATGGTGCTGATGTTTCCCATACAGACCCTCATGAATGGACAG---CTGAAGATTATGCTGTTA------TTCA-TGGATATTCTAG------g----taattttttaa
i colLiv1.KB375358             C 0 N 0
e vicPac2.KB632521               1182903  50 -   7152218 I
e camFer1.KB018161                 11244  50 -     34802 I
e ornAna1.Ultra479               3871811 317 -   6008416 I
e anoCar2.chrUn_GL344195           44405 324 +     59083 I
e allMis1.JH737798                 79914 2359 +    106177 I
e macEug2.GL108065                 84006 1294 -    187545 I
e sarHar1.chr5_GL861647_random    319184 1417 -   4230514 I
e monDom5.chr8                 137893861 1569 - 312544902 I
e taeGut2.chr1A                 23692727   0 +  73657157 I
e orcOrc1.KB316915               2917162  42 -  11690531 I

a score=24938.000000
s hg38.chr8_KI270814v1_alt        123951 12 +    141812 AAATAAAAAA----TA
s panTro4.chr8                  55026435 12 + 143986469 aaataaaaaa----ta
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59167022 12 + 153482349 aaataaaaaa----ta
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81382633  3 - 104879549 AA-------------A
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61693967 12 + 150158102 AAATAAAAGA----TA
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58367802 12 + 146850525 aaataaaaga----ta
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53288435 12 + 139301422 aaataaaaga----ta
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33709462  4 + 155834243 AA-AA-----------
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4066292 11 +   9144518 AA-TAAAATA----TA
i saiBol1.JH378196             C 0 I 656
s otoGar3.GL873762               1565812 12 -   1847653 AAATAAAAGA----TA
i otoGar3.GL873762             C 0 C 0
s equCab2.chr29                 10876902 12 +  33672925 AAATATAAAA----TA
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9909925 12 +  34209287 AAATTTAAAA----TA
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3122540 10 -   3193751 ATATATAAAA------
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                239789 12 -   2104649 AAATATAAAA----TA
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39456056 12 -  55688157 aaataaaaaa----ta
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 22532 16 +   6345240 aaataaaaaaaaagaa
i triMan1.JH594766             C 0 C 0
e vicPac2.KB632521               1182903 50 -   7152218 I
e camFer1.KB018161                 11244 50 -     34802 I
e ornAna1.Ultra479               3871811 317 -   6008416 I
e anoCar2.chrUn_GL344195           44405 324 +     59083 I
e allMis1.JH737798                 79914 2359 +    106177 I
e macEug2.GL108065                 84006 1294 -    187545 I
e sarHar1.chr5_GL861647_random    319184 1417 -   4230514 I
e monDom5.chr8                 137893861 1569 - 312544902 I
e taeGut2.chr1A                 23692727  0 +  73657157 I
e orcOrc1.KB316915               2917162 42 -  11690531 I

a score=131230.000000
s hg38.chr8_KI270814v1_alt        123963 27 +    141812 ATTTTAAGTAGCAATGAAAATGGAAAC
s panTro4.chr8                  55026447 27 + 143986469 attttaaGTAGCAATGAAAATGGAAAC
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59167034 27 + 153482349 attttaaGTAGCAATGAAAATAGAAAC
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81382636 23 - 104879549 AT----AGTATCAATTACAATAGAAAC
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61693979 27 + 150158102 ATTTTAAGTAGCAATGAAAATAGAAAC
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58367814 27 + 146850525 attttaagtagcaatgaaaatagaaac
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53288447 27 + 139301422 attttaagtagcaatgaaaatagaaac
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33709466 23 + 155834243 ----TAAGTAGCAATTACAATAGAAAC
i calJac3.chr7                 C 0 C 0
s otoGar3.GL873762               1565824 21 -   1847653 ATTTTAGGTAGCATTTAAAAC------
i otoGar3.GL873762             C 0 C 0
s equCab2.chr29                 10876914 27 +  33672925 ATTTTGGGTAACGATTaaaatggaaac
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9909937 27 +  34209287 ATTTTGATTAGCAATTAAAATGGAAAC
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3122550 23 -   3193751 ---TAAAGTAGTAATTAAAATGGAAA-
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                239801 25 -   2104649 CTTTAAAGTA-CAATTAAAATGAAAT-
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39456068 27 -  55688157 atataaagtagcaattaaagtggaaag
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 22548 27 +   6345240 atgtgaagtagcaactaaaatggaaag
i triMan1.JH594766             C 0 C 0
e vicPac2.KB632521               1182903 50 -   7152218 I
e camFer1.KB018161                 11244 50 -     34802 I
e ornAna1.Ultra479               3871811 317 -   6008416 I
e anoCar2.chrUn_GL344195           44405 324 +     59083 I
e allMis1.JH737798                 79914 2359 +    106177 I
e macEug2.GL108065                 84006 1294 -    187545 I
e sarHar1.chr5_GL861647_random    319184 1417 -   4230514 I
e monDom5.chr8                 137893861 1569 - 312544902 I
e taeGut2.chr1A                 23692727  0 +  73657157 I
e orcOrc1.KB316915               2917162 42 -  11690531 I
e saiBol1.JH378196               4066303 656 +   9144518 I

a score=113774.000000
s hg38.chr8_KI270814v1_alt        123990 34 +    141812 CAGAA--TAAAAATGGATTAATGCATTTTAAGAAGT-------
s panTro4.chr8                  55026474 34 + 143986469 CAGAA--TAAAAATGGATTAATGCATTTTAAGAAGT-------
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59167061 34 + 153482349 CAGAA--TAAAAATGGATTAATGCATTTTAAGAAGT-------
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81382659 34 - 104879549 CAGAA--TAAAAATGGATTATTGCATTTTAAGAAGT-------
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61694006 34 + 150158102 CAGAA--TAAAAATGGATTAATGCATTTTAAGAAGT-------
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58367841 34 + 146850525 cagaa--taaaaatGGATTAATGCATTTTAAGAAGT-------
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53288474 34 + 139301422 cagaa--taaaaatGGATTAATGCATTTTAAGAAGT-------
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33709489 33 + 155834243 CAGAA--TAAAAATGGATTATTGCA-TTTAAGAAGT-------
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4066959 24 +   9144518 cagaa--aaaaaaaaaa----------ttaaaaaaT-------
i saiBol1.JH378196             I 656 C 0
s otoGar3.GL873762               1565845 16 -   1847653 -----------AATTGATTA---------AATAAGT-------
i otoGar3.GL873762             C 0 C 0
s equCab2.chr29                 10876941 25 +  33672925 cagaa--taaaaacaga---------tttaaaaaag-------
i equCab2.chr29                C 0 I 1
s cerSim1.JH767738               9909964 24 +  34209287 CAGAA--TAAAAACAGA----------TTAAAAAAG-------
i cerSim1.JH767738             C 0 I 1
s pteAle1.KB031146               3122573 28 -   3193751 GAGAAAGTAAAAACCAA--------TTTTAAAAAGG-------
i pteAle1.KB031146             C 0 I 1
s myoLuc2.GL429990                239826 23 -   2104649 CAGGA--TTAAAAT-----------TTTTAAAAAAG-------
i myoLuc2.GL429990             C 0 I 361
s loxAfr3.scaffold_15           39456095 32 -  55688157 caaaa--taaaaatgaa---------cttaaaaagaaagtaga
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 22575 32 +   6345240 cagaa--taaaaatgaa---------tttaaaaagaaagaaga
i triMan1.JH594766             C 0 C 0
e vicPac2.KB632521               1182903 50 -   7152218 I
e camFer1.KB018161                 11244 50 -     34802 I
e ornAna1.Ultra479               3871811 317 -   6008416 I
e anoCar2.chrUn_GL344195           44405 324 +     59083 I
e allMis1.JH737798                 79914 2359 +    106177 I
e macEug2.GL108065                 84006 1294 -    187545 I
e sarHar1.chr5_GL861647_random    319184 1417 -   4230514 I
e monDom5.chr8                 137893861 1569 - 312544902 I
e taeGut2.chr1A                 23692727  0 +  73657157 I
e orcOrc1.KB316915               2917162 42 -  11690531 I

a score=285579.000000
s hg38.chr8_KI270814v1_alt        124024 66 +    141812 AGAT-TTGCATTAGGGTCCTAGGATTATAAATATCATTAAAATTG-AGAATAAAATTTCATACTGA-AC
s panTro4.chr8                  55026508 66 + 143986469 AGAT-TTGCATTAGGGTCCTAGGATTATAAATATCATTATAATTG-AGAATAAAATTTCATACTGA-AC
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59167095 66 + 153482349 AGAT-TTGCATTAGGGTCCTAAGATTATAAATATCGTTATAATTG-AGAATAAAATTTCATACTGA-AC
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81382693 60 - 104879549 AGAT-ATGCATTAGGATCCTAGG------AGTATCATTATAATTG-AGAATAAAATTTTATACTGA-At
i nomLeu3.chr18                C 0 I 316
s rheMac3.chr8                  61694040 66 + 150158102 AGAT-ATGCATTAGGGTCCTAGGATTATCAATATCATTATAATTG-AGAATAAAATTTCATACTGA-AC
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58367875 66 + 146850525 AGAT-ATGCATTAGGGTCCTAGGATTATCAATATCATTATAATTG-AGAATAAAATTTCATACTGA-AC
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53288508 63 + 139301422 AGAT-ATGCATTAGGGTCCTAGGATTATAAAT---ATTATAATTG-AGAATAAAATTTCATACTGA-AC
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33709522 59 + 155834243 ACAT-ATGTGTTAGGATCCTAGGAT------TATTATTGTAATTG-AGAATAAACTTTTATACTGA-A-
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4066983 48 +   9144518 A--------AGCAGGGTCCTAGGA-----------ATGGTAATTG-AGAATAACATTTTATATAGATG-
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1565861 57 -   1847653 GTAT-ATGCAGTAGGGTTACGGGAT------TATCATTATCATCG-AAAATAAAATTGCATATGC----
i otoGar3.GL873762             C 0 C 0
s equCab2.chr29                 10876967 58 +  33672925 agat-atacattaggg--ccaggat------tatcattataattg-agaataaaatttcatattaa-ac
i equCab2.chr29                I 1 C 0
s cerSim1.JH767738               9909989 60 +  34209287 AGAT-GTATGTTAGGGCCCCAGGAT------TATCATTATAATTG-AAAATAAAATTTCATGTTGA-GC
i cerSim1.JH767738             I 1 C 0
s pteAle1.KB031146               3122602 60 -   3193751 AGAT-ATGCATTTGGGTCTCAGGAT------TATCATTATAATTG-AGAATAAAATTTCATATTGT-GC
i pteAle1.KB031146             I 1 C 0
s myoLuc2.GL429990                240210 60 -   2104649 AGAT-TCACTACAATATCCCAAGAT------TATCAACATAATTG-AGAATATAGTTTTGTATTGA-GC
i myoLuc2.GL429990             I 361 C 0
s loxAfr3.scaffold_15           39456127 61 -  55688157 aaATGATGCGTTAGGACCCCAGGA-------ACTTATTATAATAGAAGAAAAAAAATTTGCACTGA-GC
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 22607 60 +   6345240 aaatgaTGCATTAGGG-CCTAGAA-------ATTTATTATAATGGAAGACAGAAAGTTTGCACTGA-GC
i triMan1.JH594766             C 0 C 0
e vicPac2.KB632521               1182903 50 -   7152218 I
e camFer1.KB018161                 11244 50 -     34802 I
e ornAna1.Ultra479               3871811 317 -   6008416 I
e anoCar2.chrUn_GL344195           44405 324 +     59083 I
e allMis1.JH737798                 79914 2359 +    106177 I
e macEug2.GL108065                 84006 1294 -    187545 I
e sarHar1.chr5_GL861647_random    319184 1417 -   4230514 I
e monDom5.chr8                 137893861 1569 - 312544902 I
e taeGut2.chr1A                 23692727  0 +  73657157 I
e orcOrc1.KB316915               2917162 42 -  11690531 I

a score=2635677.000000
s hg38.chr8_KI270814v1_alt        124090 485 +    141812 TTTGTAACAGC-----T-AAAATTCTGTGACTCTGTAATAGGAGAAACCCAATGGACCATTTAATAATAAGCAATCAAAATTCATTTGAAGCCTATCTCTT-TTAATTTAGAGACCATTTCCTTAGTGA-TCTACTTGGAGCAGGAGCACCTGACTTTGGCAGCTGGGATCCTGGGCCCATTGATAGAAAATAATCAAGTGAGTTTG--TATCACTTGGAGGAAACCTCTACCTTTATTGGAAAGCTTTAAAAACTGTAATCCTGAAA--CTTTA-ATTCCTCAAATGTTAATA---TTGCCAC-AAAACC----TATTGTCAAATAAGGATTAGGCAAAGTTCAAGACATTTCTTGAATACTGGACATATAATTCACAGTTTTATAATATTTCTCAAACATAGATGATCA---TAGG--ATCTTCCTATTCAGGTACAGTCTTTAAATTCTGGCAAAGTAAATATTCTTTGGAATACAGTTTAAGAAGTACTACTCTAGAGGTAATAATT
s panTro4.chr8                  55026574 485 + 143986469 TTTGTAACAGC-----T-AAAATTCTGTGACCCTGTAATAGGAGAAACCCAATGGACCATTTAATAATAAGCAATCAAAATTCATTTGAAGCCTATCTCTT-TTAATTTAGAGCCCATTTCCTTAGTGA-CCTACTTGGAGCAGGAGCACCTGACTTTGGCAGCTGGGATCCTGGGCCCATTGATAGAAAATAATCAAGTGAGTTTG--TATCACTTGGAGGAAACCTCTACCTTTATTGGAAAGCTTTAAAAACTGTAATCCTGAAA--CTTTA-ATTCCTCAAATGTTAATA---TTGCCAC-AAAACC----TATTGTCAAATAAGGATTAGGCAAAGTTCAAGACATTTCTTGAATACTGGACATATAATTCACAGTTTTATAATATTTCTCAAACATAGATGATCA---TAGG--ATCTTCCTATTCAGGTACAGTCTTTAAATTCTGGCAAAGTAAATATTCTTTGGAATATAGTTTAAGAAGTACTACTCTAGAGGTAATAATT
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59167161 485 + 153482349 TTTGTAACAGC-----T-AAAATTCTGTGATCCTGTAATAGGAGAAACCCAATGGACCATTTAATAATAAGCAATCAAAATTCATTTGAAGCCTATCTCTT-TTAATTTAGAGCCCATTTCCTTAGTGA-CCTACTTGGAGCAGGAGTGCCTGACTTTGGCAGCTGGGATCCTGGGCCCATTGATAGAAAATAATCAAGTGAGTTTG--TATCACTTGGAGGAAACCTCTACCTTTATTGGAAAGCTTTAAAAACTATACTCCTGAAA--TTTTA-ATTCCTCAAATGTTAATA---TTGCCAC-AAAACC----TATTGTCAAATAAGGATTAGGCAAAGTTCAAGACATTTCTTGAATACTGGACATATAATTCACAGTTTTATAATATTTCTCAAACATAGACGATCA---TAGG--ATCTTCCTGTTCAGGTACAGTCTTTAAATTCTGGCAAAGTAAATATTCTTTGGAATATAGTTTAAGAAGTATTACTCTAGAGGTAATAATT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81383069 479 - 104879549 TTTCTAATAGCTGAGAT-AAAATCCTATTGTCTGGTAATAGGATAAACCCCATGGACCATTTAATAATAAGCAATCAAAGTTTATTTGAAGCCAATCTCTT-TTAATTTAGAG-CCACTTCCTTAGTGA-CCCATTTAGAGCAGGAGTGCCTGACACTGGCATCTGGAATCTTGGGATCATTGATAGAAGAGAATCAAGTGAGTTTG--TATCACCCAGAGGAAGCCTCCATTTTTGGGGGGAAGCTTTCAAAACTGCATCCCTGAAA--TCCTA-ATTTGTCAAATGTTAATG--TTTGCCACAAAAATA----TACTGTTAAATAAGGATTAGGTAAAGTTCAATTCATTTCTTGAATAATGAACATTTAATTCACAGTTTTATAACATTTCTTGAACATAGATAATGG---TGGA--AT----CTGTTGGGGTACAGT-----GCTTCTAATAAGGTAATTATTCTTTGGAATATAGTT---GAAACACTGTTCTAGAGGTAATAATT
i nomLeu3.chr18                I 316 C 0
s rheMac3.chr8                  61694106 472 + 150158102 TTTCTAACAGC-----T-AAAATTCTGTGATCCTGTCATAGGAGAAACCTAAGGGACCATTTAATAATAAGCAATCAAAATTCATTTGAAGCCT----CTT-TTAATTCAGAGCCCATTTCCTTAGTGA-CCTACTTGGAGCAGGAGTGCCTGACTTTGGCAGCTGGGATCCTGGGCCCATTGATAGAAAATAATCAAGTGAGTTTG--TGTCACCTGGAGGAAACCCCTACCTTTACTGGAAAGTTTTAAAAACTGTGCTCCTGAAA--TTTTA-ATTCCTCAAATGTTAG-----TTGCCAC-AAAACC----TATTGTCAAATAAGGATTAGGCAAAGGTCAAGACATTTCTTGAATACCGGACATATAATC--CAGTTTTAT---ATTTCTCAAACGTAGATGACCA---TAGG--ATCTTCCTGTTCAGGTGCAGT--CTAACTTCTGACAAAGTAAATATTCTTTGGAATATAGTTTAGGAAGTACTGCTCTAGAGGTAATAATT
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58367941 472 + 146850525 TTTCTAACAGC-----T-AAAATTCTGTGATCCTGTCATGGGAGAAACCTAAGGGACCATTTAATAATAAGCAATCAAAATTCATTTGAAGCCT----CAT-TTAATTCAGAGCCCATTTCCTTAGTGA-CCTACTTGGAGCAGGAGTGCCTGACTTTGGCAGCTGGGATCCTGGGCCCATTGATAGAAAATAATCAAGTGAGTTTG--TGTCACCTGGAGGAAACCCCTACCTTTATTGGAAAGTTTTAAAAACTGTGCTCCTGAAA--TTTTA-ATTCCTCAAATGTTAG-----TTGCCAC-AAAACC----TATTGTCAAATAAGGATTAGGCAAAGGTCAAGACATTTCTTGAATACCGGACATATAATC--CAGTTTTAT---ATTTCTCAAACGTAGATGACCA---TAGG--ATCTTCCTGTTCAGGTGCAGT--CTAACTTCTGACAAAGTAAATATTCTTTGGAATATAGTTTAGGAAGTACTGCTCTAGAGGTAATAATT
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53288571 476 + 139301422 TTTCTAACAGC-----T-AAAATTCTGTGATCCTGTCATAGGAGAAACCCAATGGACCATTTAATAATAAGCAATCAAAATTCATTTGAAGCCTATCCCTT-TTAATTCAGAGCCCATTTCCTTAGTGA-CCTACTTGGAACAGGAGTGCCTGACTTTGGCAGCTAGGATCCTGGGCCCATTGATAGAAAATAATCAAGTGAGTTTG--TGTCACCTGGAGGAAACCCCTACCTTTATTGGAAAGTTTTTAAAACTGTGCTCCTGAAA--TTTTA-ATTCCTCAAATGTTAG-----TTGCCAC-AAAACC----TATTGTCAAATAAGGATTAGGCAAAGGTCAAGACATTTCTTGAATACCGGACATATAATC--CAGTTTTAT---ATTTCTCAAACGTAGATGACCA---TAGG--ATCTTCCTGTTCAGGTGCAGT--CTAACTTCTGACAAAGTAAATGTTCTTTGAAATATAGTTTAGGAAGTACTACTCTAGAGGTAATAATT
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33709581 483 + 155834243 TTTCTAATACCTGAGAT-AAAATATTATTGTCTTGTAATAGGAGAAACCCCATGGACCATTTAAAAATAAGCAAGCAAAGTTCATTTGAAACTAATCTCTT-TTAATTTGGAGCCCACTTCCTTATTGA-CCCATCTAGAGCAGGAGTGCCTGACATTGACACCTCAGATCCTGGGATCATTAATAGAAGAAAATCAAGCATGTTTG--TATCACCTAGAGGAAACCTCAGTTTATCTTGGGAAGCTTTCAAAACTGTATCCCTGAAA--TTCTA-ATTTGTCAAATGTTAATG--TCTGCCAC-AAAAATA---CATTGTCCAGTAAGGATTAGGCAAAGTTCAAGTCATTTTTTGAATAATGGACATTTAACTCACAGTTTTATAATATTTCTTGAACATAGGTAATGG---GGAA--A----TCTGTTGGGGTATAGT-----GCTTCTGGTAAGATAATTATTCTTTGGAATATAGTTTAAGAAACACTGCTCTACAAGTGATAATC
i calJac3.chr7                 C 0 I 307
s saiBol1.JH378196               4067031 488 +   9144518 TTTCTAATGGCTAAAAT-AAAAATCTATTCTCTTTAAAAAGGAGAAAACTCATGGAGCATTTACTAATAAGCAGTGGAAGTTCATTTGAAGCTGA-----T-TTAATTCACAGACCATTTTCTTAGTGA-CTCATTTGCAGCAGGAGTGCCTGACATTGGCATTTGGGATTCTGACGCCACTGACAGAAGAGAAGCAAGTGAGTTTGCATATAACCTGGAGGAAACCTCCACCT-TATTGGAAAGCTCTCACAGCTACAGCCCTGAAA--TTCTG-ATTTCTCAAATGCCAATA--TTTGCCAC-AAAACAG---TGTTGTCAAAAAGGGATTAGGCAAAGTGTAAGAGATTTCTTGACTACTGGACATATAATGCACAGTTCTGTACCATTTCTCAAACATCCATGATCG---TGGA--ATCCTTCTGTTGGAGTACAGTCTTTAACATCTGGTAACATAAACATTCTTTGGAATGCAGTGTAAGAAACACTGCTCTAGAGGCATTAATT
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1565918 453 -   1847653 TTTCTAATAT------T-AAAAATTTATCCCCTTTTAATAGGACAAGTCCTAAGGATTATCTCATAATAATCAATTGAAGTTCATTTGCAGTCCATCTCTT-TTAAGTCAGAGCTCATTTTCCTAGTGA-GCCATCTA-------AGTGCCTGACATTGGCATATGGGTTCCCGACATCATTGATAAAAGGGACTCATGTGAGTTTG--TGTCACCTGCAGGAAACCTCAGCTGTTGTTGACAAGCACTTGAAACTATATCTATGAAA--CTCTC-ATCACTT-AATGATAATG--TTTGCCAC-AAAGAAG---TATTGTCTAATA-GGATTAGGC-AGGTCCAAGAGTTTTCTTGAATATTGGACATAGAATG--CAGTTTTGTAATATTTCTTAAACATAGGTGATCA---TGGA--ATATTTCTGTTGAAGCACAAT--------CCTTGTA--GTAAATATTCTTTGAAATATAGT--------CACTGCTCTAGAGATAATT---
i otoGar3.GL873762             C 0 C 0
s equCab2.chr29                 10877025 477 +  33672925 tttctaacagttaagat-aaaTACCTCTCATCTTATAATAAGAGAAAACCCATGGACTGTTTAGT-ATAAGCAGTCAAAGGTCAT---AAGCCCGTCTCTT-TTAGTTCAGCGCTCATTTCCTTAGGGA-CGCATGTGGAGCAGGAGTGCCTGCTGTTGGCATCTGGGATCCTGATACCATTGATAGGAGAGAATCAAGCAAGTCTG--TACCACCTGGAGAAATCCTTCACCTTTACTGGAAAGCTCTCAGAGCTGTATCCCTGAGA----CTA-GTTTCTCAGATGTTAGTG--TTTGCCTC-AAAAAAG---TATTGTCACATGGGGATTAAGCAAATTTAGAGAGATTTCTTTAGTACTAGACATATAATG--CAGCTTTGTAATATTTCTCCAACATAGATGATCG---TAGA--ATCTTTCTGTTCGGGCACAGT-----ACTTCTGG-GAAGTACATATTCTGT-GAATATAATTTAGGAAACACTACTCCAGAGACCATCATT
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9910049 482 +  34209287 TTTCTAACAGTTAAG-T-AAAAATCTATCATGTCATAATAGGAGAAAGCCCGTGGACCATGTAGT-GTAAGCAGTCACAGTTCATCTGAAGC----CTCTC-TTCCTTCAGAGCCCATGTCCTCAGTGG-CCCTTGGGGAGCGGGAGGGGCTGCTGTTGGCATCTGGGCTCCTGACAGTGTTGACAGAAGAGAGTCGAGCACATTTG--CA-CACCTGGAGAAAACCTTCACC-TTATTGGAAAGCTCTCAAAACT-TATCCCTGAAA--CTCTA-ATTTCTCAAATGTTAATG---TTGCCAC-AAAAAAG---TATTGTCAAACAGGGATTAAGCAAATTTAAACAGATTTCTTTAGTACTAGACATATAATGCACAGTTTTGTAATATTTCTCCAACATAGACAATCA---TGGA--ATCTTTCTGTTGGGGCACAGTACTTAACTTCTGGTAAAGAACATATTCTGTGGAAGATAATTTAAGAAACCCTATTCCAGAGATAAGCATT
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3122662 479 -   3193751 TTTCTAACAGCTAAGAT-AAAAAGCTATCTTAT------AGAAGAAAACCCATGGACCATTTAGTAATATGCAA----AGTTGATTTGAAGCCCATGTCTTTTTAATTTAGAGTCCATTTCCTTAGTGA-CCCTTTCAGAGCAGGGGTGCCTGAAGCTGACACCTGGGATCC--ATAGCATTAATGGAGGAGAATCTAGCAAGTTTG--TATAACCTGGAG-AAATCTTCACTTCTTTTGGAAAGCTCTCAAAACTGTATCCTTGAGACTCTAAA-ATTTCTCAAATGTTAATG--TGTTTGCC-ATAAAAATAGTATTGTCAAATCAGGATTAAGCCAAGTTAAAC--ATTTCTTTAGTCCTAGGCATATAAAACA-GGTTTTGTAATATTTTTCAAACACAGGTGATCTTTCTGGG--ATCTTTCTATTGGAGCGCAGTACTTAACTTCTAGTAA-----ATATTCCTTGGAAGATGATTT-ATTAATACTATTCCAGAGacaatcatt
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                240270 480 -   2104649 TTTCTAACAGCTAAAAT-AAAAAGCTATCCTGTCATAAAAGAAGAAAA-CCATGGACCACTAAGTAATAAGCAATCAGAGTTCATTTGAAGCCTA-------TTAATTT--AGTCAATTTTTTTAGAGA-CCCTTTTGGAGCAGGAGTGACTGATGTTGACATCTGGGATCCTGATAGCATTTGTAGAAGAGAAT----CAACTGTG--TGTAACCTGGAGAAAACCTTCACCTTTGTTGAAAAGTTCTCAAAACTGTATACCTGAAACCCTCTA-ATTTTTCAAATGTTAATG--TTTGTGAC-AGAAAAC---TATTGTCAAATCAGGATTAAGCGAAGTTAAAC--ATT--TTTAGTACTAGGCATACAGTGTATAGTTTTGTAATATTTCTTAAACACA--TGATCTTTCTGGATCCTTTTTCTATTGGGGTAAAGTACTGAACTTCTGGTAAACTACATATTCTTTGAAATATAATTTAAGAAACACTACTCTAGAGCTAATCATT
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39456188 441 -  55688157 TTTCCAGCAGCTAAAATAAAAAATCTTCCATCTTGTAGTAGGAGAAAACCCATGAAAC----AGTAATAAGCAGTGTAAGTTTGTTAGGAGCCTGTCTC---TTGATTCTGAGCTCATTTATTCAGTGA-CCTGTTTGGAGCATAAGTGCCTGACGTTGGCGCCTGGGATCCTGACACTATTGACAGAAGAGACTCTAACGAGTTTG--CATAACATGAAG-----------------------CCTCTGAAAACTATATCCTTGGAA--TTCTTAATTCCTGAAATATTAATAAGGTTATCAC-AGAAAG----TATTATCAAATATGGATCAAGCAAAGTTCAACAGACGTCTTTAGTACTCAGA------------------------TTATCAAACATAGATGACCA---TGGA--ATCTGT-TATTGAGCCATAGAACTTACCTTCTGGTAAAATAAGTGTTCTTTGGAATATAGTCTAAGAAACACTGCTCTAAAGATAACCATT
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 22667 443 +   6345240 TTTCTAACAGCTAAGAT-AAAAATCTTTCATCTTGTAGTAGGAGAAAACCGAGGGAACACTTAGTAATAAGCAGTCTGAGTTCATTAGGAGCCTATCTC---TTGATTCAGAGCCCATTTCCTTAGTGACCCCATTTGGAGCAGCAGTGCTTGACACTGGCATCTGGGATCCTGACGCTATAGACAGAAGAGAATCAAACGAGTTTG--TATAACATGTAG-----------------------GCTCTCAAAACTATATCCCTGAAA--CTCTT-ATTCCTCAAATGTTAGTAAGTGCATCAC-AAAAAG----TATTGTCAAATATGTATTAAGCAAAGTTAAACAGATATCTTTAGTGCCAAGC------------------------TTACCAAACCTACATGACCA---TGGA--CTCTCT-TATGGCGGCACTGTACTTACCTTCTGGTGAAAT-AGTATTCTTTAGAATATAGTCTAAGATACACTGCTCTAGAGATAACCATT
i triMan1.JH594766             C 0 C 0
e vicPac2.KB632521               1182903  50 -   7152218 I
e camFer1.KB018161                 11244  50 -     34802 I
e ornAna1.Ultra479               3871811 317 -   6008416 I
e anoCar2.chrUn_GL344195           44405 324 +     59083 I
e allMis1.JH737798                 79914 2359 +    106177 I
e macEug2.GL108065                 84006 1294 -    187545 I
e sarHar1.chr5_GL861647_random    319184 1417 -   4230514 I
e monDom5.chr8                 137893861 1569 - 312544902 I
e taeGut2.chr1A                 23692727   0 +  73657157 I
e orcOrc1.KB316915               2917162  42 -  11690531 I

a score=245734.000000
s hg38.chr8_KI270814v1_alt        124575 41 +    141812 TAGAtcattgatttaataaaaatacttaaagtatttac--tac
s panTro4.chr8                  55027059 41 + 143986469 TAGAtcattaatttaataaaaatacttaaagtatttac--tac
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59167646 41 + 153482349 TAGAtcattaatttaataaaaatacttaaagcatttac--tac
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81383548 38 - 104879549 TAGATTACTAATTTAGTAAAAA---ACAAAGTATTTAc--tac
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61694578 41 + 150158102 TAGAtcattaatttaataaaaatacttaaagcatttac--tat
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58368413 41 + 146850525 TAGAtcattaatttaataaaaatacttaaagcatttac--tat
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53289047 43 + 139301422 TAGAtcattaatttaataaaaatacttgaagcatttactatat
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33710371 36 + 155834243 TAGATTACTAATTTAATAGAAA-----AAACTATTTAc--tac
i calJac3.chr7                 I 307 C 0
s saiBol1.JH378196               4067519 36 +   9144518 GAGATCATTAATGAAAACGCTT-----GAAGCATTTAC--TAA
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1566371 41 -   1847653 TAGAtcattaatttaataaaaatatgtaaagaattaac--tac
i otoGar3.GL873762             C 0 C 0
s equCab2.chr29                 10877502 41 +  33672925 TAGGTTATTAATTGACAAAAAATCCTTAAAGCATTTAC--TGC
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9910531 41 +  34209287 TAGGTTACTAATTCAATAAAAATACTTAAAGCATTTAC--TGC
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3123141 20 -   3193751 tagg---------------------ttaaagcctttac--tgc
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                240750 41 -   2104649 TAGGttatttattcagtaaaaatacttaaagcatttac--tac
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39456629 41 -  55688157 TAGATCATTGATTCAATAAGAATACTTTAAACATTTAC--TAC
i loxAfr3.scaffold_15          C 0 I 699
s triMan1.JH594766                 23110 41 +   6345240 TAGATCACTAATTCAATAACAATACTTAAAACATTTAC--TAC
i triMan1.JH594766             C 0 C 0
e vicPac2.KB632521               1182903 50 -   7152218 I
e camFer1.KB018161                 11244 50 -     34802 I
e ornAna1.Ultra479               3871811 317 -   6008416 I
e anoCar2.chrUn_GL344195           44405 324 +     59083 I
e allMis1.JH737798                 79914 2359 +    106177 I
e macEug2.GL108065                 84006 1294 -    187545 I
e sarHar1.chr5_GL861647_random    319184 1417 -   4230514 I
e monDom5.chr8                 137893861 1569 - 312544902 I
e taeGut2.chr1A                 23692727  0 +  73657157 I
e orcOrc1.KB316915               2917162 42 -  11690531 I

a score=8647.000000
s hg38.chr8_KI270814v1_alt        124616 2 +    141812 ta
s panTro4.chr8                  55027100 2 + 143986469 ga
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59167687 2 + 153482349 ta
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81383586 2 - 104879549 ta
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61694619 2 + 150158102 ga
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58368454 2 + 146850525 ga
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53289090 2 + 139301422 ga
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33710407 2 + 155834243 ta
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4067555 2 +   9144518 TA
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1566412 2 -   1847653 ta
i otoGar3.GL873762             C 0 C 0
s equCab2.chr29                 10877543 2 +  33672925 TG
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9910572 2 +  34209287 TA
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3123161 2 -   3193751 tg
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                240791 2 -   2104649 ta
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39457369 2 -  55688157 ta
i loxAfr3.scaffold_15          I 699 C 0
s triMan1.JH594766                 23151 2 +   6345240 TA
i triMan1.JH594766             C 0 I 188
e vicPac2.KB632521               1182903 50 -   7152218 I
e camFer1.KB018161                 11244 50 -     34802 I
e ornAna1.Ultra479               3871811 317 -   6008416 I
e anoCar2.chrUn_GL344195           44405 324 +     59083 I
e allMis1.JH737798                 79914 2359 +    106177 I
e macEug2.GL108065                 84006 1294 -    187545 I
e sarHar1.chr5_GL861647_random    319184 1417 -   4230514 I
e monDom5.chr8                 137893861 1569 - 312544902 I
e taeGut2.chr1A                 23692727 0 +  73657157 I
e orcOrc1.KB316915               2917162 42 -  11690531 I

a score=325941.000000
s hg38.chr8_KI270814v1_alt        124618 67 +    141812 tgtcatagggtttgaggataaacagata---aaagatacagcagc-tgccctcaagaatctgttggtttag
s panTro4.chr8                  55027102 67 + 143986469 tgtcatagggtttgaggataaacagata---aaagatacagcagc-tgccctcaagaatctgttggtttag
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59167689 67 + 153482349 tgtcatagggtttgaggataaagagata---aaagatacagcagc-tgccctcaagaatctgttggtttag
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81383588 67 - 104879549 tgtcttagggtttaaggatatagaggta---aaagatacagcccc-tgccctcaagaagctcttggtttac
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61694621 67 + 150158102 tatcatagggtttggggataaagagata---aaagacacagcagc-ttccctcaagaatctcttggtttag
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58368456 67 + 146850525 tatcatagggtttggggataaagagata---aaagacacagcagc-ttccctcaagaatctcttggtttag
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53289092 67 + 139301422 tgtcatagggtttgtggataaagagata---aaagacacagcagc-ttccctcaagaatctcttggtttag
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33710409 68 + 155834243 caacttagtgtttaaggctatagagata---aaagatacagccctacaccctcaagaaactcttggtttag
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4067557 67 +   9144518 TTTCTTAAGATTTgggaacatagatatc---gaagataaagcccc-tgctctcaagaagctcttggtttac
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1566414 65 -   1847653 tgtcctaggtttgggggatatagaga-----aaagttacagtccc-tgatctcgagaagctcttggtttaa
i otoGar3.GL873762             C 0 C 0
s equCab2.chr29                 10877545 59 +  33672925 T--TTTAGAGTTTGTAGATAGAG---------AAAGAATAGCCCC-TGCGCTCAGGAACCTCTTGGTTTAG
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9910574 23 +  34209287 TGGTTTAGAGTTTGGAGATAGAG------------------------------------------------
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3123163 69 -   3193751 tgttttagagtttgtagatacagagataaagaaaaaaaaagcctt--gccctcatgaagctcttgatttag
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                240793 66 -   2104649 tgttttatagtatggagacatagagat----caaaaaatagcctc-agccctcaagaagctcttggtttag
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39457371 67 -  55688157 tattctagggtttggggataaagaggta---aaagatacagtccc-tgctttcaagaagttcttggttgag
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 23341 67 +   6345240 tattcgagggtttggggataaagaggta---aaagatacaatctc-tgctttcaagaagttcttgctttag
i triMan1.JH594766             I 188 C 0
e vicPac2.KB632521               1182903 50 -   7152218 I
e camFer1.KB018161                 11244 50 -     34802 I
e ornAna1.Ultra479               3871811 317 -   6008416 I
e anoCar2.chrUn_GL344195           44405 324 +     59083 I
e allMis1.JH737798                 79914 2359 +    106177 I
e macEug2.GL108065                 84006 1294 -    187545 I
e sarHar1.chr5_GL861647_random    319184 1417 -   4230514 I
e monDom5.chr8                 137893861 1569 - 312544902 I
e taeGut2.chr1A                 23692727  0 +  73657157 I
e orcOrc1.KB316915               2917162 42 -  11690531 I

a score=7513.000000
s hg38.chr8_KI270814v1_alt        124685 1 +    141812 a
s panTro4.chr8                  55027169 1 + 143986469 a
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59167756 1 + 153482349 a
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81383655 1 - 104879549 a
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61694688 1 + 150158102 A
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58368523 1 + 146850525 A
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53289159 1 + 139301422 a
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33710477 1 + 155834243 a
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4067624 1 +   9144518 a
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1566479 1 -   1847653 a
i otoGar3.GL873762             C 0 C 0
s equCab2.chr29                 10877604 1 +  33672925 A
i equCab2.chr29                C 0 C 0
s pteAle1.KB031146               3123232 1 -   3193751 a
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                240859 1 -   2104649 a
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39457438 1 -  55688157 g
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 23408 1 +   6345240 g
i triMan1.JH594766             C 0 C 0
s ornAna1.Ultra479               3872128 1 -   6008416 A
i ornAna1.Ultra479             I 317 C 0
e vicPac2.KB632521               1182903 50 -   7152218 I
e camFer1.KB018161                 11244 50 -     34802 I
e anoCar2.chrUn_GL344195           44405 324 +     59083 I
e allMis1.JH737798                 79914 2359 +    106177 I
e macEug2.GL108065                 84006 1294 -    187545 I
e sarHar1.chr5_GL861647_random    319184 1417 -   4230514 I
e monDom5.chr8                 137893861 1569 - 312544902 I
e taeGut2.chr1A                 23692727 0 +  73657157 I
e cerSim1.JH767738               9910597 0 +  34209287 C
e orcOrc1.KB316915               2917162 42 -  11690531 I

a score=34175.000000
s hg38.chr8_KI270814v1_alt        124686 7 +    141812 tagaaat
s panTro4.chr8                  55027170 7 + 143986469 tagaaat
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59167757 7 + 153482349 tagaaat
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81383656 7 - 104879549 tgggaaa
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61694689 7 + 150158102 TAGGAAT
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58368524 7 + 146850525 TAGGAAT
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53289160 7 + 139301422 taggaat
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33710478 7 + 155834243 tgggaaa
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4067625 7 +   9144518 tgaaaaa
i saiBol1.JH378196             C 0 I 1
s otoGar3.GL873762               1566480 7 -   1847653 tgggaaa
i otoGar3.GL873762             C 0 C 0
s orcOrc1.KB316915               2917204 7 -  11690531 TATAGAG
i orcOrc1.KB316915             I 42 C 0
s equCab2.chr29                 10877605 7 +  33672925 TGGTGAG
i equCab2.chr29                C 0 C 0
s pteAle1.KB031146               3123233 7 -   3193751 tggggag
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                240860 7 -   2104649 tggggag
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39457439 7 -  55688157 tagggac
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 23409 7 +   6345240 tagggaa
i triMan1.JH594766             C 0 C 0
s ornAna1.Ultra479               3872129 7 -   6008416 TAATAAT
i ornAna1.Ultra479             C 0 C 0
e vicPac2.KB632521               1182903 50 -   7152218 I
e camFer1.KB018161                 11244 50 -     34802 I
e anoCar2.chrUn_GL344195           44405 324 +     59083 I
e allMis1.JH737798                 79914 2359 +    106177 I
e macEug2.GL108065                 84006 1294 -    187545 I
e sarHar1.chr5_GL861647_random    319184 1417 -   4230514 I
e monDom5.chr8                 137893861 1569 - 312544902 I
e taeGut2.chr1A                 23692727 0 +  73657157 I
e cerSim1.JH767738               9910597 0 +  34209287 C

a score=514714.000000
s hg38.chr8_KI270814v1_alt        124693 182 +    141812 caataaaattattacaata----------------taccatgtgaaatgctgtgctag-----aaacaaagaTTATTGAAACCAGTGACTGTTTCAAATCATTTTTGGAG-CTGAC--------CAGAGTTAAT---GTGA-GTCAG---AGG----CCGGATGTTTTCAAGTGGAGGAGGAG-TGCATGGGAAAGCACAGAG-GAGTGAGAAGG----AAGGGACAGA
s panTro4.chr8                  55027177 182 + 143986469 caataaaattattacaata----------------taccatgtgaaatgctgtgctag-----aaacaaagaTTATTGAAACCAGTGACTGTTTCAAATCATTTTTGGAG-CTGAC--------CAGAGTTAAT---GTGA-GTCAG---AGG----CCGGATGTTTTCAAGTGGAGGAGGAG-TGCATGGGAAAGCACAGAG-GAGTGAGAAGG----AAGGGACAGA
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59167764 182 + 153482349 caataaaattattacaata----------------taccatgtgaaatgctgtgctag-----aaacaaagaTTATTGAAACCAGTGACTGTTTCAAATCATTTTTGGAG-CTGAC--------CAGAGTTAAT---GTGA-GTCAG---AGG----CCAGATGCTTTCAAGTGGAGGAGCAG-TGCATGGGAAAGTACAGAG-GAGTGAGAAGG----AAGGGACAGC
i ponAbe2.chr8                 C 0 I 1
s nomLeu3.chr18                 81383663 130 - 104879549 caataaagtcattacaata----------------t------------------------------------------------------------aaTGATTTTTGGAG-ATAAC--------CAGAGTTAATGTGGTGA-TGCAG---AGG----CTGAATGTTTACAAGAGAAGGTGCAG-TGCACGGGAAAGCACAGAA-AAGTGAGAAAG----AAGGGATTGC
i nomLeu3.chr18                C 0 I 1
s rheMac3.chr8                  61694696 185 + 150158102 CAATAAAATTATTACAAGA----------------TACCATGTGAAATGTTGTGCCAG-----AAGCAAAGATTCTTGAAACCAGTGAATGTTTCAAATCATTTTTGGAG-CTGGC--------CAGAGTTAACGTGGTGA-GTCAG---AGG----CCAGATGTTTTCAAGTGGAGGAGCAG-TGCATGGGAAAGCACAGAG-GAGTGAGAAGG----AAGGGACTGC
i rheMac3.chr8                 C 0 I 1
s macFas5.chr8                  58368531 185 + 146850525 CAATAAAATTATTACAAGA----------------TACCATGTGAAATGTTGTGCCAG-----AAGCAAAGATTCTTGAAACCAGTGAATGTTTCAAATCATTTTTGGAG-CTGGC--------CAGAGTTAACGTGGTGA-GTCAG---AGG----CCAGATGTTTTCAAGTGGAGGAGCAG-TGCATGGGAAAGCACAGAG-GAGTGAGAAGG----AAGGGACTGC
i macFas5.chr8                 C 0 I 1
s chlSab2.chr8                  53289167 185 + 139301422 caataaaattattacaata----------------taCCATGTGAAATTTTGTGCCAG-----AAGCAAAGATTCTTGAAACCAGTGAATGTTTCAAATCATTTTTGGAG-CTGGC--------CAGAGTTAATGTGGTGA-GTCAG---AGG----CCAGATGTTTTCAAGTGGAGGAGCAG-TGCATGGGAAAGCACAGAG-GAGTGAGAAGG----AAGGGACTGC
i chlSab2.chr8                 C 0 I 1
s calJac3.chr7                  33710485 123 + 155834243 ----caaatcattacaata----------------t------------------------------------------------------------aaTGATTTTTTGAG-ATATT--------CGGAGTTAATGCGGTGA-TGTAG---AGG----CTGAATGTTTCTGAGGGAAGGTGCAG-TGGAAGGGAAAGCACAGAA-A---AGGGAGA----AAGGGACTGC
i calJac3.chr7                 C 0 I 1
s saiBol1.JH378196               4067633 178 +   9144518 tagtaaaatcattgcaata----------------tactctgctaagtgctgtgacag-----aagcaaagaTGATTAGAACTGGTA-----TTGAAGTGAGTTTTGGAG-ATGAC--------CAGCCTTCCTGTGATGA-GGTGG---AAG------AGGTTCTTCCATGGGAAGGAACAG-CAAACGGGAAAGCGCAGAA-GAATAAAAAGG----AAGGGAGGAC
i saiBol1.JH378196             I 1 I 1
s otoGar3.GL873762               1566487 168 -   1847653 gaataaactaattgcaata----------------tgcggtgctaaatggtgtgagag-----aagcaaagaACCTTGGAACTGGTGAATGTTTGAAGTGAGTTTTGGAC-ATGGC----------AAGTTGTTGTGGTGA-GGCAG---AGG----AGGGGAGTTT---------------G-CACATGGAAAAGCACAGAG-GGGTGAACAGG----AAGGGACTGC
i otoGar3.GL873762             C 0 I 1
s vicPac2.KB632521               1182953 170 -   7152218 CAGTAAGGTAACTACAGAA----------------G-GCCTGATAGACACTGCGATAG-----AAGCGAAGATTCTTGGAACCAGTAGACATTTGAAGTGAGTTTTAGAGAATGAC------TTCATGATTAATCTTTTGA-AGAGGTCAAGG----A-GAACGTTTTAAAG---------------AGG----AGCACAGAG-GGGTGAGGAAG----AA-GTGCTAC
i vicPac2.KB632521             I 50 I 1
s camFer1.KB018161                 11294 171 -     34802 CAGTAAGGTAACTACAGAA----------------G-GCCTGATAGACACTGCGATAG-----AAGCAAAGATTCTTGGAACCAGTAAACATTTGAAGTGAGTTTTAGAGAATGAC------TTCATGATTAATCTTTTGA-AGAGGTCAAGG----AGGAACATTTTAAAG---------------AGG----AGCACAGAG-GGCTGAGGAAG----AA-GTGCTAC
i camFer1.KB018161             I 50 I 1
s orcOrc1.KB316915               2917211 176 -  11690531 CAATAAAATAACTCCAGTA----------------T-ACCTGATAAATACTGTGATAG-----AAGCAAAGATCCTTGGAACCGGTAAATGTTGGAAGTGAGTTTTAGAGAATGAC------TTTGCAGTTAATCATGTAA-AGAAGT----G----AGGAGCATTTTAAAGAGAAGGA--------AGA----AGCACAGCGTGGGTGAGAAGG----AAGGGGCTCC
i orcOrc1.KB316915             C 0 I 1
s equCab2.chr29                 10877612 183 +  33672925 CAATGAAATAACTACAGCG----------------T-GCGTGATAAACACTGTGATGG-----AAGCGAAGACTCTTGGAACCAGCAAATGTTGGCAGTGGGTTTGGGAGAATGAC------TCTGCAGTCAGTCTGGGGA-AG-AGGCGGAG----GAGGGCATCTTAAAGAGAAGGAGCCG---CAGGGG--AGCACAGCG-GG--GGAGGGG----CAGGGGCTGC
i equCab2.chr29                C 0 I 1
s cerSim1.JH767738               9910597  73 +  34209287 --------------------------------------------------------------------------------------------------------TGTGAGAAT--------------------------------------------AGGGGCGTTTTAAAGAGAAGGAGCAG---CAGGTGACAGCACAGCG-GGCCGAGGAGG----AAGGGGCTGC
i cerSim1.JH767738             C 0 I 1
s pteAle1.KB031146               3123240 164 -   3193751 caatacgataactaccgaa----------------tactacgatagatactgtgatag-----gagCCAGGATTCTTGGAATTAGTA--------CTGTGAGTTTTGGAGAATGAT------GTTGCAGTTAATCTTTTGA-AG--AGGAAGA----AAAAATATTTTAAAGAGAAGGAGCAG---CAGGAGACAGCTCGG--------------------AGGGCTAC
i pteAle1.KB031146             C 0 I 1
s myoLuc2.GL429990                240867 154 -   2104649 CAATAAAATAATGACACTA----------------TAGCACGATAGATTATGTGATAG-----GAAC---------------------------------AGTTTTAGAGAATGGT------GTTGCAGTTAATCTTTTGA-AGGAGGGAGTG----GAGGGCATTTTAAAGAGAAGGAGCAG---CCAGTAACAGCACAGGG-GT--GAGAAGG----AAGGGGTTAC
i myoLuc2.GL429990             C 0 I 1
s loxAfr3.scaffold_15           39457446 208 -  55688157 tgataaaataattacaatatttgtgatgtaattattgtaattacaaatgctgtgatgg-----aagcagagattcttggaaccggtaaatgtttaaagtgagttttggagaatgaa------tgtggagttaatctggtga-agaggtaagggtgacggggacatttcaaagaaaaggaacag-cacatgggaaa-gaggggg-gg--tgagagg----aagggactac
i loxAfr3.scaffold_15          C 0 I 1
s triMan1.JH594766                 23416 192 +   6345240 aaataaaataatttcaaca----------------taccatgataaatgctgtgatag-----acgcacagaTTCTTGGCACCAGTAAATGTTCGAAGCGAGTTTTGGAATGTGAA------TTTGGAGTTAATCTGGTAA-AGCGGTAGAGGGGA-GGGGGTGCTTCAAAGACAAGGAACAG-CACATGGGAAACCACAGGA-GG--TGAGAGG----AAGGGGCTAC
i triMan1.JH594766             C 0 I 1
s ornAna1.Ultra479               3872136 187 -   6008416 CAGTTTGATCAATATCAAA----------------T-AAATGTTGATCGCTGTGCTTGTGTCTCAGGAAAATTGCTCAGGATTG------------AGCGGGTTTTGAAA-TTGTTTCATATTCTGAAAGGAATCCCTTAATATCAG---AGC----ACGGAGCCCATTAAG----GAAGTAGTTACTAATAATGGTACCCAG-ATATGATATAGTTACACGGGACAAG
i ornAna1.Ultra479             C 0 C 0
e anoCar2.chrUn_GL344195           44405 324 +     59083 I
e allMis1.JH737798                 79914 2359 +    106177 I
e macEug2.GL108065                 84006 1294 -    187545 I
e sarHar1.chr5_GL861647_random    319184 1417 -   4230514 I
e monDom5.chr8                 137893861 1569 - 312544902 I
e taeGut2.chr1A                 23692727   0 +  73657157 I

a score=64232.000000
s hg38.chr8_KI270814v1_alt        124875 10 +    141812 -----------------------TTTTATTTGC
s panTro4.chr8                  55027359 10 + 143986469 -----------------------TTTTATTTGC
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59167947 10 + 153482349 -----------------------TTTTATTTGC
i ponAbe2.chr8                 I 1 C 0
s nomLeu3.chr18                 81383794 10 - 104879549 -----------------------ACTGATTTAC
i nomLeu3.chr18                I 1 C 0
s rheMac3.chr8                  61694882 10 + 150158102 -----------------------TTTTATTTGC
i rheMac3.chr8                 I 1 C 0
s macFas5.chr8                  58368717 10 + 146850525 -----------------------TTTTATTTGC
i macFas5.chr8                 I 1 C 0
s chlSab2.chr8                  53289353 10 + 139301422 -----------------------TTTTATTTGC
i chlSab2.chr8                 I 1 C 0
s calJac3.chr7                  33710609 10 + 155834243 -----------------------GTTGATTTGC
i calJac3.chr7                 I 1 C 0
s saiBol1.JH378196               4067812 10 +   9144518 -----------------------TATTAGCTAA
i saiBol1.JH378196             I 1 C 0
s otoGar3.GL873762               1566656 10 -   1847653 -----------------------TTTTATTTAC
i otoGar3.GL873762             I 1 C 0
s vicPac2.KB632521               1183124 10 -   7152218 -----------------------TTTTATTTAC
i vicPac2.KB632521             I 1 C 0
s camFer1.KB018161                 11466 10 -     34802 -----------------------TTTTATTTAC
i camFer1.KB018161             I 1 C 0
s orcOrc1.KB316915               2917388 10 -  11690531 -----------------------TTTTATTTAC
i orcOrc1.KB316915             I 1 C 0
s equCab2.chr29                 10877796 10 +  33672925 -----------------------TTGTATTTGC
i equCab2.chr29                I 1 C 0
s cerSim1.JH767738               9910671 10 +  34209287 -----------------------TTGTATTTAC
i cerSim1.JH767738             I 1 C 0
s pteAle1.KB031146               3123405 10 -   3193751 -----------------------TTTTAGTTAC
i pteAle1.KB031146             I 1 C 0
s myoLuc2.GL429990                241022 10 -   2104649 -----------------------TTTTATTTAC
i myoLuc2.GL429990             I 1 C 0
s loxAfr3.scaffold_15           39457655  5 -  55688157 ----------------------------TTATC
i loxAfr3.scaffold_15          I 1 C 0
s triMan1.JH594766                 23609 10 +   6345240 -----------------------TTTTATTATC
i triMan1.JH594766             I 1 C 0
s monDom5.chr8                 137895430 10 - 312544902 -----------------------TTGTATGCCC
i monDom5.chr8                 I 1569 C 0
s ornAna1.Ultra479               3872323 33 -   6008416 CTCTCTAGTAGTTTGTGAGGACTTATTTCTTAA
i ornAna1.Ultra479             C 0 C 0
e anoCar2.chrUn_GL344195           44405 324 +     59083 I
e allMis1.JH737798                 79914 2359 +    106177 I
e macEug2.GL108065                 84006 1294 -    187545 I
e sarHar1.chr5_GL861647_random    319184 1417 -   4230514 I
e taeGut2.chr1A                 23692727  0 +  73657157 I

a score=43475.000000
s hg38.chr8_KI270814v1_alt        124885 12 +    141812 TTTCTATTTTAT-
s panTro4.chr8                  55027369 12 + 143986469 TTTCTATTTTAT-
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59167957 12 + 153482349 TTTCTATTTTAT-
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81383804  7 - 104879549 TTTCTAT------
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61694892 10 + 150158102 TTTCTATTT--T-
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58368727 10 + 146850525 TTTCTATTT--T-
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53289363 12 + 139301422 TTTCTATTTTAT-
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33710619 12 + 155834243 TTCCTATTTTAT-
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4067822 12 +   9144518 TTTCTGTGTTAC-
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1566666  7 -   1847653 ATTCTAT------
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1183134 10 -   7152218 TT--TATATTAT-
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                 11476 10 -     34802 TT--TATATTAT-
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2917398 12 -  11690531 TTTCTATATTAG-
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10877806 12 +  33672925 TTTCTTCGATAG-
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9910681 12 +  34209287 TTTCTACATTAG-
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3123415 12 -   3193751 TTCCTATACTAT-
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                241032 12 -   2104649 TTTCTGTATTAT-
i myoLuc2.GL429990             C 0 I 687
s loxAfr3.scaffold_15           39457660 12 -  55688157 TTCCCATATTAT-
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 23619 12 +   6345240 TTTCCACATTAT-
i triMan1.JH594766             C 0 C 0
s monDom5.chr8                 137895440 12 - 312544902 TACTTCCTTAAG-
i monDom5.chr8                 C 0 C 0
s ornAna1.Ultra479               3872356 12 -   6008416 TTCCAACCTTAT-
i ornAna1.Ultra479             C 0 I 1
s anoCar2.chrUn_GL344195           44729 12 +     59083 -tttcattttaat
i anoCar2.chrUn_GL344195       I 324 C 0
e allMis1.JH737798                 79914 2359 +    106177 I
e macEug2.GL108065                 84006 1294 -    187545 I
e sarHar1.chr5_GL861647_random    319184 1417 -   4230514 I
e taeGut2.chr1A                 23692727  0 +  73657157 I

a score=4365.000000
s hg38.chr8_KI270814v1_alt        124897 1 +    141812 G
s panTro4.chr8                  55027381 1 + 143986469 G
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59167969 1 + 153482349 G
i ponAbe2.chr8                 C 0 C 0
s rheMac3.chr8                  61694902 1 + 150158102 G
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58368737 1 + 146850525 G
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53289375 1 + 139301422 G
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33710631 1 + 155834243 G
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4067834 1 +   9144518 A
i saiBol1.JH378196             C 0 C 0
s vicPac2.KB632521               1183144 1 -   7152218 A
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                 11486 1 -     34802 A
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2917410 1 -  11690531 A
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10877818 1 +  33672925 A
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9910693 1 +  34209287 A
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3123427 1 -   3193751 A
i pteAle1.KB031146             C 0 C 0
s loxAfr3.scaffold_15           39457672 1 -  55688157 A
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 23631 1 +   6345240 G
i triMan1.JH594766             C 0 C 0
s monDom5.chr8                 137895452 1 - 312544902 G
i monDom5.chr8                 C 0 C 0
s anoCar2.chrUn_GL344195           44741 1 +     59083 a
i anoCar2.chrUn_GL344195       C 0 C 0
e myoLuc2.GL429990                241044 687 -   2104649 I
e ornAna1.Ultra479               3872368 1 -   6008416 I
e allMis1.JH737798                 79914 2359 +    106177 I
e macEug2.GL108065                 84006 1294 -    187545 I
e sarHar1.chr5_GL861647_random    319184 1417 -   4230514 I
e taeGut2.chr1A                 23692727 0 +  73657157 I
e nomLeu3.chr18                 81383811 0 - 104879549 C
e otoGar3.GL873762               1566673 0 -   1847653 C

a score=66070.000000
s hg38.chr8_KI270814v1_alt        124898 5 +    141812 TGTTT
s panTro4.chr8                  55027382 4 + 143986469 TG-TT
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59167970 5 + 153482349 TGTTT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81383811 5 - 104879549 TGTTT
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61694903 5 + 150158102 TGTTT
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58368738 5 + 146850525 TGTTT
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53289376 5 + 139301422 TGTTT
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33710632 5 + 155834243 TGTTT
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4067835 5 +   9144518 TGTTT
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1566673 5 -   1847653 GATAT
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1183145 5 -   7152218 TGTTT
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                 11487 5 -     34802 TGTTT
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2917411 5 -  11690531 TGTTT
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10877819 5 +  33672925 CGTTT
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9910694 5 +  34209287 TGTTT
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3123428 5 -   3193751 TGTTT
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                241731 5 -   2104649 TGTTT
i myoLuc2.GL429990             I 687 C 0
s loxAfr3.scaffold_15           39457673 5 -  55688157 TGCTT
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 23632 5 +   6345240 TGCTT
i triMan1.JH594766             C 0 C 0
s monDom5.chr8                 137895453 5 - 312544902 TGCCT
i monDom5.chr8                 C 0 I 2
s ornAna1.Ultra479               3872369 3 -   6008416 --TTT
i ornAna1.Ultra479             I 1 I 11
s anoCar2.chrUn_GL344195           44742 5 +     59083 tattt
i anoCar2.chrUn_GL344195       C 0 C 0
e allMis1.JH737798                 79914 2359 +    106177 I
e macEug2.GL108065                 84006 1294 -    187545 I
e sarHar1.chr5_GL861647_random    319184 1417 -   4230514 I
e taeGut2.chr1A                 23692727 0 +  73657157 I

a score=195190.000000
s hg38.chr8_KI270814v1_alt        124903 35 +    141812 AAGTTCATAA--------GACCTT-ATAT------AAGGTATTCAGT--------TC---A
s panTro4.chr8                  55027386 35 + 143986469 AAGTTCATAA--------GACCTT-ATAT------AAGGTATTCAGC--------TC---A
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59167975 35 + 153482349 AAGTTCATAG--------GACCTT-ATAT------GAGGTATTCAGC--------TC---A
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81383816 35 - 104879549 AAGTTCATAG--------GATATT-ATAT------AAGGTATTCAGT--------TC---A
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61694908 35 + 150158102 AAGTTCATAG--------GACATT-ATAT------AAGGTATTCAGC--------TC---A
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58368743 35 + 146850525 AAGTTCATAG--------GACATT-ATAT------AAGGTATTCAGC--------TC---A
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53289381 35 + 139301422 AAGTTCATAG--------GACATT-ATAT------AAGGTATTCAGC--------TC---A
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33710637 35 + 155834243 AAGTTCGTAG--------GATATT-ATAT------AAGGTATTCAGT--------TC---A
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4067840 41 +   9144518 AAGTCTGTAG--------GATCTT-ACATACATGCAAGGTTTCCAAT--------TC---A
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1566678 34 -   1847653 AAGTTCA-AA--------GATCTT-ATAT------GAGGTCTTGAGT--------TT---A
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1183150 33 -   7152218 AAGTTCAAAG--------A--CTG-TTAT------GAGTTTTTAAAT--------TC---A
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                 11492 33 -     34802 AAGTTCAAAG--------A--CTG-TTAT------GAGTTTTTAAAT--------TC---A
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2917416 35 -  11690531 AAGTTCAGAG--------AATCTA-TTAT------AAGTTTTAAAAT--------TC---A
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10877824 35 +  33672925 AAGTCCAGAG--------GACCTT-TTAT------CAGTTTTCAAAT--------GC---A
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9910699 43 +  34209287 AAGTTCAGAG--------GATCTT-TTAT------CAGTTTTTAAATTCAGTCTATC---A
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3123433 35 -   3193751 AAATTCAGAT--------GACCTT-TCat------aagttttaaaat--------tc---a
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                241736 35 -   2104649 AAGTCCAGAG--------GATCTT-TTAT------AAGTTTTAAAAT--------TC---A
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39457678 34 -  55688157 TAGTTTATAG--------TATCTT-GTTT------AAGGTTTTAAAC---------A---A
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 23637 34 +   6345240 TAGTTTATAG--------CATCTT-TTTT------AAGGTTTTAAAA---------A---A
i triMan1.JH594766             C 0 C 0
s monDom5.chr8                 137895460 36 - 312544902 AGCTTCACAA--------TATATTCACAA------AATGCCTTAAGT--------TG---A
i monDom5.chr8                 I 2 C 0
s sarHar1.chr5_GL861647_random    320601 36 -   4230514 AAATTCATAA--------GATATTCACAA------AATATCTTAAGC--------TG---a
i sarHar1.chr5_GL861647_random I 1417 C 0
s macEug2.GL108065                 85300 36 -    187545 AAGTTCACAG--------AATGTTCACAA------AATGCATTCAAC--------TG---A
i macEug2.GL108065             I 1294 C 0
s ornAna1.Ultra479               3872383 37 -   6008416 TAGTCCATTA--------AATGTC--CAA------CTGGCATTTGGT--------TCCCGA
i ornAna1.Ultra479             I 11 C 0
s anoCar2.chrUn_GL344195           44747 34 +     59083 aagttATAAATAATTCTTGATCTT-AAAG------AAAACA--------------------
i anoCar2.chrUn_GL344195       C 0 C 0
e allMis1.JH737798                 79914 2359 +    106177 I
e taeGut2.chr1A                 23692727  0 +  73657157 I

a score=32611.000000
s hg38.chr8_KI270814v1_alt        124938 8 +    141812 GCTGACAA
s panTro4.chr8                  55027421 8 + 143986469 GCTGACAA
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59168010 8 + 153482349 GCTGACAA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81383851 8 - 104879549 GCTGAGAA
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61694943 8 + 150158102 GCTGACGA
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58368778 8 + 146850525 GCTGACGA
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53289416 8 + 139301422 GCTGACGA
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33710672 8 + 155834243 GCTGAGAA
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4067881 8 +   9144518 GATGAGAA
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1566712 8 -   1847653 GTTAAGAA
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1183183 8 -   7152218 GCTTTGAA
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                 11525 8 -     34802 GCTTTGAA
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2917451 8 -  11690531 GTTTAGAA
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10877859 8 +  33672925 CTTTAGAA
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9910742 8 +  34209287 TTTTTTAA
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3123468 8 -   3193751 gtttagaa
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                241771 8 -   2104649 GTTTGGAT
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39457712 8 -  55688157 GTTGAGAA
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 23671 8 +   6345240 GTAGAGAA
i triMan1.JH594766             C 0 C 0
s monDom5.chr8                 137895496 8 - 312544902 ATTGAAGT
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    320637 8 -   4230514 attgaaat
i sarHar1.chr5_GL861647_random C 0 C 0
s macEug2.GL108065                 85336 8 -    187545 ATTGAAGT
i macEug2.GL108065             C 0 C 0
s ornAna1.Ultra479               3872420 8 -   6008416 GCGAGATG
i ornAna1.Ultra479             C 0 C 0
s cheMyd1.KB511174                     1 8 -       205 GTTGAGGA
i cheMyd1.KB511174             N 0 C 0
s anoCar2.chrUn_GL344195           44781 7 +     59083 ATGGAAA-
i anoCar2.chrUn_GL344195       C 0 C 0
e allMis1.JH737798                 79914 2359 +    106177 I
e taeGut2.chr1A                 23692727 0 +  73657157 I

a score=16916.000000
s hg38.chr8_KI270814v1_alt        124946 1 +    141812 A
s panTro4.chr8                  55027429 1 + 143986469 A
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59168018 1 + 153482349 A
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81383859 1 - 104879549 A
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61694951 1 + 150158102 A
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58368786 1 + 146850525 A
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53289424 1 + 139301422 A
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33710680 1 + 155834243 A
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4067889 1 +   9144518 G
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1566720 1 -   1847653 A
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1183191 1 -   7152218 A
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                 11533 1 -     34802 A
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2917459 1 -  11690531 A
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10877867 1 +  33672925 A
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9910750 1 +  34209287 A
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3123476 1 -   3193751 a
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                241779 1 -   2104649 A
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39457720 1 -  55688157 A
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 23679 1 +   6345240 A
i triMan1.JH594766             C 0 C 0
s monDom5.chr8                 137895504 1 - 312544902 C
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    320645 1 -   4230514 a
i sarHar1.chr5_GL861647_random C 0 C 0
s macEug2.GL108065                 85344 1 -    187545 A
i macEug2.GL108065             C 0 C 0
s ornAna1.Ultra479               3872428 1 -   6008416 C
i ornAna1.Ultra479             C 0 C 0
s allMis1.JH737798                 82273 1 +    106177 A
i allMis1.JH737798             I 2359 C 0
s cheMyd1.KB511174                     9 1 -       205 A
i cheMyd1.KB511174             C 0 C 0
s anoCar2.chrUn_GL344195           44788 1 +     59083 A
i anoCar2.chrUn_GL344195       C 0 I 5
e taeGut2.chr1A                 23692727 0 +  73657157 I

a score=156669.000000
s hg38.chr8_KI270814v1_alt        124947 15 +    141812 TATGT---AATTTTATGA
s panTro4.chr8                  55027430 15 + 143986469 TATGT---AATTTTATGA
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59168019 15 + 153482349 TATGT---AATTTTATGA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81383860 15 - 104879549 TATGT---AATTTCATGA
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61694952 15 + 150158102 TATGT---AATTTTATGA
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58368787 15 + 146850525 TATGT---AATTTTATGA
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53289425 15 + 139301422 TATGT---AATTTTATGA
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33710681 15 + 155834243 TGTGT---AATTTCATAA
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4067890 15 +   9144518 TATGT---AATTTTGTGA
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1566721 15 -   1847653 TAAGT---AATTTTGTGA
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1183192 15 -   7152218 TATGT---AATTTTGTAC
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                 11534 15 -     34802 TACGT---AATTTTGTAC
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2917460 15 -  11690531 TATGT---AACTTTGTAC
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10877868 15 +  33672925 TACGT---AATTTTGTAA
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9910751 15 +  34209287 TATGT---CATTTTGTAA
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3123477 13 -   3193751 tatat---aaatttat--
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                241780 15 -   2104649 TATGt---aattttataa
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39457721 16 -  55688157 TATGT--AAATTTTGTAA
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 23680 15 +   6345240 TATAT---AATTTTGTAA
i triMan1.JH594766             C 0 C 0
s monDom5.chr8                 137895505 18 - 312544902 TATAGTGAATCCTTTCAT
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    320646 18 -   4230514 taaatagaattctTCCAT
i sarHar1.chr5_GL861647_random C 0 C 0
s macEug2.GL108065                 85345 18 -    187545 TATTAATAATTCTTGTAT
i macEug2.GL108065             C 0 C 0
s ornAna1.Ultra479               3872429 15 -   6008416 TATAT---AATTTCCAAG
i ornAna1.Ultra479             C 0 C 0
s zonAlb1.KB913353                299950 15 +    306686 TCTGT---TATTCTAAGA
i zonAlb1.KB913353             N 0 C 0
s taeGut2.chr1                  80455490 15 + 118548696 TCTGT---TATTCTAAGA
i taeGut2.chr1                 I 500 C 0
s allMis1.JH737798                 82274 15 +    106177 TATAT---CAATCTATCA
i allMis1.JH737798             C 0 C 0
s cheMyd1.KB511174                    10 15 -       205 TATGT---ACTTTTTTGA
i cheMyd1.KB511174             C 0 C 0
s anoCar2.chrUn_GL344195           44794 10 +     59083 TGTGT---CACTG-----
i anoCar2.chrUn_GL344195       I 5 C 0

a score=1812434.000000
s hg38.chr8_KI270814v1_alt        124962 126 +    141812 AT----TAT-AA----------ATTG--TTTTTGCC---------ATTTTACAGGATGGCCTCATACCACTTTTACTTGCCATAACTAAAAGAAGACAGCAAATGGTATAATTTTTACTAACAAAAAATGCAAATGTAAATGCAGTTGATAA
s panTro4.chr8                  55027445 126 + 143986469 AT----TAT-AA----------ATTG--TTTTTGCC---------ATTTTACAGGATGGCCTCGTACCACTTTTACTTGCCATAACTAAAAGAAGACAGCAAATGGTATAATTTTTACTAACAAAAAATGCAAATGTAAATGCAATTGATAA
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59168034 123 + 153482349 AT----TAT-AA----------ATTG--TTTTTGCC---------ATTTTACAGGATGGCGTCATACCACTTTTACTTGCCATAACTAA---AAGACAGCAAATGGTATAATTTTTACTAACAAAAAATGCAAATGTAAATGCAGTCAATAA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81383875 126 - 104879549 AT----TAT-AA----------ATTG--TTTTTGCT---------GTTTTACAGGCTGGCCACACACCACTTTTACTGGCCATAAGGAAAAGGAGTGAACAAATTGTGGAATTTTTACTGACAAAAAATGCAAATGCAAATGCAGTTGATAA
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61694967 126 + 150158102 AT----TAT-AA----------ATTG--TTTTTGCC---------ATTTTACAGGATGGCCTCACACCATTTTTATGTGCCATAACTAAAAGAAGACAGCAAATGGTATAATTTTTACTAACAAAAAATGCAAATGTAAATGCAGTAGATAA
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58368802 126 + 146850525 AT----TAT-AA----------ATTG--TTTTTGCC---------ATTTTACAGGATGGCCTCACACCACTTTTATGTGCCATAACTAAAAGAAGACAGCAAATGGTATAATTTTTACTAACAAAAAATGCAAATGTAAATGCAGTAGATAA
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53289440 126 + 139301422 AT----TAT-AA----------ATTG--TTTTTGCC---------ATTTTACAGGATGGCCTCACACCACTTTTATGTGCCATAACTAAAAGAAGACAGCAAATGGTATAATTTTTACTAACAAAAAATGCAAATGTAAATGCAGTCTATAA
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33710696 126 + 155834243 AT----CAT-AA----------ATTG--TTTTTGAT---------GTTTTACAGGCTACCCTCACACCACTTTTACTGGCCATAACTAAAAGAAATGTGCAAATTGTGGAATTTTTACTGTCAAAAAAAGCAAATGCAAATGCAGTTAATGA
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4067905 123 +   9144518 GT----TAC-AA----------GTTG--TTCTTGCT---------GTTTTACAGGATGAACTCACACCATTTTTACTAGCTGTACATGAAGAAAAACAGGAAATGGTAGAATTTTTAATAAAGCAAGAAGAAAATTTAACTGCAGTTA---A
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1566736 127 -   1847653 AT----TATCAA----------TTTT--TTTTTGCT---------GTTTTACAGGGTGGATTCACACCACTTTTACTTGCTGTGAATTATAATAGACAGCTCATGGTGGAGTTTTTAATGAAGAGAAATGCAAATATAAGTGCAGTTGATAA
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1183207 126 -   7152218 AT----TAT-CA----------ACTG--TTTTTGCT---------ATTTTACAGGATGACCTCACACCACTTTTACTAGCTGTAAGTGAAAACAAACAGCAAATGGCAGAATTTCTTGTAAAGAAAGAGGCAAATATACACACAGCCAATAA
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                 11549 126 -     34802 AT----TAT-CA----------ACTG--TTTTTGCT---------GTTTTACAGGATGACCTCACACCACTTTTACTAGCTGTAAGTGAAAACAAACAGCAAATGGCAGAATTTCTTGTAAAGAAAGAGGCAAATATACATGCAGCCAATAA
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2917475 130 -  11690531 CTTCTGTAT-AA----------AGTG--TTTCTGCT---------GTTTTACAGGAGGACCTCACACCACTTTTACTTGCTGTAAGTGAAAACAATCAGCACATGGTGGAATTTTTAGTAAAGAAAGAAGCAAATATACATGTAGTTGATAA
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10877883 126 +  33672925 AT----TAT-AA----------ATTG--TTTCTGCT---------GTTTTACAGGATGACCTCACACCACTTTTACTTGCTGTAAGTGAAAACAAACAGCAAATGGTGGAATTTTTAGTAAAGCAAGAAGCAAATATACATGCAGTCGATAA
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9910766 126 +  34209287 AT----TAT-AA----------ATTG--TTTTTGCT---------GTTTTACAGGATGACCTCACACCACTTTTACTTGCTGTGAGTGAAAACAAACAGCAAATGGTGGAATTTTTAGTAAAGAAAGAAGCAAATATACATGCAGTCGATAA
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3123490 128 -   3193751 at----tat-aa----------attaGTTTTTTTTT---------GTTTTACAGGATGACCTCACACCACTTTTACTTGCTATAAATGAAAACAAACAACAAATGGTGGAGTTTTTAGTAAAAAGAAATGAAAATGTACATGCCGTTGATAA
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                241795 126 -   2104649 at----tat-aa----------attG--TTTTTGCT---------GCTTTACAGGAAGACCTCACACCACTTTCACTTGCTCAAAGTGAAAATAAAGAGCAAATGGTGGAATTTTTAGTAAATAGAGGTGCAAGAATACGCACAGTCGATCA
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39457737 126 -  55688157 GT----CAT-AA----------ATTG--TTTTTCCT---------ATTTTGCAGAATGACCTCACCCCACTTTTACTTGCTGTAAGTGAAAACAAACAGCAAATGGTGGAATTTTTAGTAAAGAAAGAAGCAAATATACATGCAGTTGATAA
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 23695 126 +   6345240 AT----CAT-AA----------ATTG--TTTTTTCT---------GTTTTACAGAATGACCTCACACCACTTTTACTTGCTGTAAGTGAAAACAAACAGCAGATGGTGGAGTTTTTAGTAAAGAAAGAAGCAAATATACATGCAGTTGATAA
i triMan1.JH594766             C 0 C 0
s monDom5.chr8                 137895523 128 - 312544902 AC------T-AAC---------AGTA--TCTTTAAT------ATGATTTTACAGGAAGGCTATACACCACTTTTGCTTGCAATTACAGAACATAACAAAGAAATGGTAGATTTTTTCTTAAAGAATGGAGCAAATGTGAATGCCTGCGACAA
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    320664 130 -   4230514 AT----TAT-AAC---------AATG--TCTTTCTT------ATGATTTTACAGGAAGGCTATACACCACTTTTGCTTGCAGTTACAGAAAATAACCATGATATAGtagattttttcttaaagaatggAGCAAATGTGAATGCCTCAGATAA
i sarHar1.chr5_GL861647_random C 0 C 0
s macEug2.GL108065                 85363 130 -    187545 AC----TGT-AAC---------ACTG--TCTTTAAT------ATGATTTTGCAGGAAGGCTATACACCATTTTTGCTTGCTGTTACAGAAAATAACCAAGATATGGTAGATCTTTTCTTAAAGAATGGAGCAAATGTGAATGCCTCAGATAG
i macEug2.GL108065             C 0 C 0
s ornAna1.Ultra479               3872444 122 -   6008416 GT--------AA----------CTTG--TTAAAACT----------TTTTGCAGGAGGGATACACACCACTCTTGCTGGCTGTAATTCAAAATCACCAAGAAATGGTGGAGTTCCTCCTTAAGAAAGGAGCAGATGTGAATGCCCGGGATAA
i ornAna1.Ultra479             C 0 C 0
s zonAlb1.KB913353                299965 118 +    306686 ----------------------GAGA--TGATTTCT----------CCTTTCAGTGGGGATACACTCCGCTTACTCTTGCAATCACTGAAAACCGCGAAGAAATGGTCAAGTTCCTTCTTCAAAAAGGAGCTGACGTGAATGCTCAGGATGA
i zonAlb1.KB913353             C 0 C 0
s geoFor1.JH739892              10643185 123 +  17022292 -----------------ATTCTGAGA--TGATTTCT----------CCTTTCAGTGGGGATACACTCCGCTTACTCTTGCAGTCACTGAAAACCGTGAAGAAATGGTCAAGTTCCTTCTTCAAAAAGGAGCTGACGTGAATGCTCAGGATAA
i geoFor1.JH739892             N 0 C 0
s taeGut2.chr1                  80455505 118 + 118548696 ----------------------GCGA--TGTTTTCT----------TCTTTTAGTGGGGATACACTCCACTTACTCTGGCAATCATTGAAAACCATGAAGAAATGGTCAAGTTCCTTCTTCAAAAAGGAGCTGACGTGAATGCTCTGGATAA
i taeGut2.chr1                 C 0 C 0
s allMis1.JH737798                 82289 122 +    106177 ------------------AAACTCAT--TGATTTAT----------TTTCATAGGATGGGTACACACCTCTTACCCTGGCTATAACTGAAAATCATCAAGGGATGGTAGAGTTTCTTCTTCAAAAAGGAGCAGATGTACATGCTGTAGATAA
i allMis1.JH737798             C 0 N 0
s cheMyd1.KB511174                    25 132 -       205 ------------ATTACATATGTTTT--TGCTTTAT------ATTGTTTTACAGCATGGCCTCACACCACTGTTACTTGGTGTACATGAGCAAAAACAGCAAGTGGTGAAATTTTTAATCAAGAAAAAAGCTAATTTAAATGCACTTGATAG
i cheMyd1.KB511174             C 0 I 7
s anoCar2.chrUn_GL344195           44804 130 +     59083 --------------------TTTATA--TCTTTTATTTGGTTATAATCTTATAGGATGGGAACACACCTTTGATTGTGGCTGTAACTGAAAATAATCGAGAAATGGTAGAGTTTCTTCTAAAACAAGGAGCATCTGTGCATGCCACTGACAA
i anoCar2.chrUn_GL344195       C 0 I 7

a score=-23858.000000
s hg38.chr8_KI270814v1_alt        125088 13 +    141812 A-------GGTTTAGT-------------CATT
s panTro4.chr8                  55027571 13 + 143986469 A-------GGTTTAGT-------------CATT
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59168157 13 + 153482349 A-------GGTTTAGT-------------CATT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81384001 20 - 104879549 GTTTAAATGGTATAGT-------------AGTT
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61695093 20 + 150158102 GTTTAAAAGGTTTAGT-------------CATT
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58368928 20 + 146850525 GTTTAAAAGGTTTAGT-------------CATT
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53289566 20 + 139301422 GTTTAAAAGGTTTAGT-------------CATT
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33710822 20 + 155834243 ATATAAATGGTATAGT-------------ATTT
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4068028 20 +   9144518 GTTTGAAAGGTACAGT-------------GATT
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1566863 20 -   1847653 TTGGAAAAGGTATAGT-------------AGTT
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1183333 29 -   7152218 GGTGAAAAGGTACAGTAGCTTGTTC----TTTT
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                 11675 33 -     34802 GGTGAAAAGGTACAGTAGtttgttctttttttt
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2917605 24 -  11690531 GATGAAAAGGTACAGTAGTT---------CTTT
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10878009 22 +  33672925 GATGAAAAGGTACAGTAG-----------TTTT
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9910892 30 +  34209287 GATGAAAAGGTACAGTAGTTGGTTCT---TTTT
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3123618 20 -   3193751 GATGAAAAGGTATAGT-------------TTTT
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                241921 18 -   2104649 GATGGAAAGGTACAGT-------------TC--
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39457863 20 -  55688157 GGCAAAAAGGTGCAGT-------------AGTT
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 23821 20 +   6345240 GGCAAAAAGGTACAGT-------------AGTT
i triMan1.JH594766             C 0 C 0
s monDom5.chr8                 137895651 20 - 312544902 TTCTAAAAGGTACAGT-------------AATC
i monDom5.chr8                 C 0 I 25
s sarHar1.chr5_GL861647_random    320794 20 -   4230514 GTCTAAAAGGTACagt-------------aatt
i sarHar1.chr5_GL861647_random C 0 I 40
s macEug2.GL108065                 85493 20 -    187545 GTTTGACAGGTACAGT-------------AATT
i macEug2.GL108065             C 0 I 29
s zonAlb1.KB913353                300083  2 +    306686 -------AG------------------------
i zonAlb1.KB913353             C 0 C 0
s geoFor1.JH739892              10643308  2 +  17022292 -------AG------------------------
i geoFor1.JH739892             C 0 C 0
s taeGut2.chr1                  80455623  2 + 118548696 -------AG------------------------
i taeGut2.chr1                 C 0 C 0
s cheMyd1.KB511174                   164 12 -       205 -------AGGTATGGTT-AT-------------
i cheMyd1.KB511174             I 7 I 2
s anoCar2.chrUn_GL344195           44941 13 +     59083 -------AGGTACAGTCGAA-------------
i anoCar2.chrUn_GL344195       I 7 I 2
e ornAna1.Ultra479               3872566  0 -   6008416 C

a score=-74894.000000
s hg38.chr8_KI270814v1_alt        125101  6 +    141812 TTT---T-------------------T---A
s panTro4.chr8                  55027584  6 + 143986469 TTT---T-------------------T---A
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59168170  6 + 153482349 TTT---T-------------------T---A
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81384021  9 - 104879549 TTTTAAT-------------------T---A
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61695113  5 + 150158102 TT----T-------------------T---A
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58368948  5 + 146850525 TT----T-------------------T---A
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53289586  5 + 139301422 TT----T-------------------T---A
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33710842  9 + 155834243 TTTTTAT-------------------T---A
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4068048  9 +   9144518 AGTTTTT-------------------T---T
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1566883  9 -   1847653 ATATTTT-------------------T---T
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1183362  9 -   7152218 TTTTTTT-------------------T---T
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                 11708  9 -     34802 ttttttt-------------------t---t
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2917629  9 -  11690531 TTCTTTT-------------------T---A
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10878031  8 +  33672925 TTTTTTT-------------------T----
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9910922  8 +  34209287 TTTTTTC-------------------T----
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3123638 12 -   3193751 TAATTTT-------------------TTAAA
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                241939  8 -   2104649 --ATTTT-------------------T--AT
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39457883 18 -  55688157 TTTTTTT----------TTGGTAATTT---T
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 23841 28 +   6345240 TTTTTTTTGTTCGTTTGTTTTTCTTTT---T
i triMan1.JH594766             C 0 C 0
s monDom5.chr8                 137895696  6 - 312544902 ---TTTC-------------------T---A
i monDom5.chr8                 I 25 C 0
s ornAna1.Ultra479               3872566  4 -   6008416 -----CT-------------------T---T
i ornAna1.Ultra479             C 0 C 0
s zonAlb1.KB913353                300085  6 +    306686 ---TTTT-------------------T---A
i zonAlb1.KB913353             C 0 C 0
s geoFor1.JH739892              10643310  6 +  17022292 ---TTTT-------------------T---A
i geoFor1.JH739892             C 0 C 0
s taeGut2.chr1                  80455625  6 + 118548696 ---TTTA-------------------T---A
i taeGut2.chr1                 C 0 C 0
s cheMyd1.KB511174                   178  6 -       205 ---CTTT-------------------T---A
i cheMyd1.KB511174             I 2 C 0
s anoCar2.chrUn_GL344195           44956  6 +     59083 ---CATT-------------------T---A
i anoCar2.chrUn_GL344195       I 2 N 0
e macEug2.GL108065                 85513 29 -    187545 I
e sarHar1.chr5_GL861647_random    320814 40 -   4230514 I

a score=-87815.000000
s hg38.chr8_KI270814v1_alt        125107 12 +    141812 AAG------TGAGTGTTG-----
s panTro4.chr8                  55027590 12 + 143986469 AAG------TGAGTGTTG-----
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59168176 12 + 153482349 AAG------TGAGTGTTG-----
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81384030 18 - 104879549 AAAAACACTTGAGTAGTG-----
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61695118 12 + 150158102 AAG------TGAGTATTG-----
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58368953 12 + 146850525 AAG------TGAGTATTG-----
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53289591 12 + 139301422 AAG------TGAGTGTTG-----
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33710851 17 + 155834243 GAA-ACACTTGAGTAGTG-----
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4068057 16 +   9144518 AAA-AAGC-TGGCTGATA-----
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1566892 11 -   1847653 AAA----CCTGAG---TG-----
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1183371 15 -   7152218 TAA---ACCTTAGTGTTG-----
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                 11717 15 -     34802 tAA---ACCTTAGTGTTG-----
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2917638 15 -  11690531 AAA---ACCTTAGTGCTG-----
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10878039 14 +  33672925 -AA---ACCTTAGTATTG-----
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9910930 14 +  34209287 -TA---AGCTTAGTATCG-----
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3123650 15 -   3193751 AAA---ATCTCGGTATTG-----
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                241947 15 -   2104649 AAA---ACCTTAGTACTG-----
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39457901 15 -  55688157 AAA---ATCTTAGTGTTC-----
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 23869 15 +   6345240 TAA---ATCTTAGTGTTG-----
i triMan1.JH594766             C 0 C 0
s monDom5.chr8                 137895702 12 - 312544902 AAG---GAAGAAGAA--------
i monDom5.chr8                 C 0 C 0
s ornAna1.Ultra479               3872570 13 -   6008416 AAA---AGGTTTGTAA-------
i ornAna1.Ultra479             C 0 I 1
s zonAlb1.KB913353                300091 12 +    306686 -----------GGTAACGGGTTT
i zonAlb1.KB913353             C 0 C 0
s geoFor1.JH739892              10643316 12 +  17022292 -----------GGTAATGAGTTT
i geoFor1.JH739892             C 0 C 0
s taeGut2.chr1                  80455631 12 + 118548696 -----------GGTAAAGGGTTT
i taeGut2.chr1                 C 0 C 0
s cheMyd1.KB511174                   184 12 -       205 -----------ATCTGTGTGTTT
i cheMyd1.KB511174             C 0 C 0
e macEug2.GL108065                 85513 29 -    187545 I
e sarHar1.chr5_GL861647_random    320814 40 -   4230514 I

a score=130034.000000
s hg38.chr8_KI270814v1_alt        125119  9 +    141812 TTCT--AGAGT
s panTro4.chr8                  55027602  9 + 143986469 TTCT--AGAGT
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59168188  9 + 153482349 TTCT--AGAGT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81384048  9 - 104879549 TGCT--AGAGT
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61695130  9 + 150158102 TTCT--AGAGT
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58368965  9 + 146850525 TTCT--AGAGT
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53289603  9 + 139301422 TTCT--AGAGT
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33710868  9 + 155834243 TTCT--AGAGT
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4068073  9 +   9144518 TTCT--ATAGT
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1566903  9 -   1847653 TTCT--ATAGT
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1183386  9 -   7152218 TTCT--AGAGT
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                 11732  9 -     34802 TTCT--AGAGT
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2917653  9 -  11690531 TTCT--AGAGT
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10878053  9 +  33672925 TTCT--AAAGT
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9910944  9 +  34209287 TTCT--AAAGT
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3123665  6 -   3193751 ---T--AGAAT
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                241962  9 -   2104649 TTCT--AGAGT
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39457916  6 -  55688157 T-----GGGGT
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 23884 11 +   6345240 TTCTAGAGGGT
i triMan1.JH594766             C 0 C 0
s sarHar1.chr5_GL861647_random    320854  9 -   4230514 ttcc--agagg
i sarHar1.chr5_GL861647_random I 40 C 0
s macEug2.GL108065                 85542  9 -    187545 TTCT--AGAGG
i macEug2.GL108065             I 29 C 0
s ornAna1.Ultra479               3872584  9 -   6008416 TCCT--GAAGT
i ornAna1.Ultra479             I 1 C 0
s zonAlb1.KB913353                300103  9 +    306686 GCCA--AAAGT
i zonAlb1.KB913353             C 0 I 16
s geoFor1.JH739892              10643328  9 +  17022292 GCCA--AAAGT
i geoFor1.JH739892             C 0 I 16
s taeGut2.chr1                  80455643  9 + 118548696 GCGA--AAAGT
i taeGut2.chr1                 C 0 I 16
s cheMyd1.KB511174                   196  9 -       205 TTCT--AAATT
i cheMyd1.KB511174             C 0 N 0
e monDom5.chr8                 137895714  0 - 312544902 C

a score=34859.000000
s hg38.chr8_KI270814v1_alt        125128 18 +    141812 CGTAA-CAT----T----CAAGTTGGA
s panTro4.chr8                  55027611 18 + 143986469 CGTAA-CAT----T----CAAGTTGGA
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59168197 18 + 153482349 CATAA-CAC----T----CAAGTTGGA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81384057 18 - 104879549 AATAA-CAT----T----CAAGTCAGA
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61695139 18 + 150158102 CATAA-CAC----T----CAAGTTGGA
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58368974 18 + 146850525 CATAA-CAC----T----CAAGTTGGA
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53289612 18 + 139301422 CATAA-CAC----T----CAAGTTGGA
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33710877 18 + 155834243 GATAA-CAA----T----CAAGTCAGA
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4068082 22 +   9144518 GATAA-TAGTCTCT----CTAGTTAGa
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1566912 19 -   1847653 AGTAATCAC----A----CAAGTCAGa
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1183395 13 -   7152218 AATAA-CAA----T---------CAGA
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                 11741 13 -     34802 AATAA-CAG----T---------CAGA
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2917662  8 -  11690531 GGTGA-CAG------------------
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10878062 22 +  33672925 GGTAA-CAA----TCACTCAAGTCAGA
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9910953 22 +  34209287 GGTAA-TAA----TCACCCAAGTCAGA
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3123671 21 -   3193751 GGTAA-CAA----T-ACTCAAGTCAGA
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                241971 22 -   2104649 GGTCA-TAA----TCACTCAAGTCAGA
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39457922 18 -  55688157 AACAA-TCG----T----CAAGTCAGA
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 23895 18 +   6345240 AACAA-TCA----T----CAAGTCAGA
i triMan1.JH594766             C 0 C 0
s monDom5.chr8                 137895714 15 - 312544902 -TTAC-TAA----------AGTTATGG
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    320863 19 -   4230514 aataa-taa---tt----taaatggtG
i sarHar1.chr5_GL861647_random C 0 C 0
s macEug2.GL108065                 85551 18 -    187545 AATAA-GAA----C----CACTTAGAG
i macEug2.GL108065             C 0 C 0
s ornAna1.Ultra479               3872593 16 -   6008416 --TAA-GAA----T----CTTTTGGGA
i ornAna1.Ultra479             C 0 C 0
s zonAlb1.KB913353                300128 18 +    306686 AGTAC-TGT----T----CGAGTTGGA
i zonAlb1.KB913353             I 16 N 0
s geoFor1.JH739892              10643353 18 +  17022292 AGCAC-TGT----T----TGAGTTGGA
i geoFor1.JH739892             I 16 N 0
s taeGut2.chr1                  80455668 18 + 118548696 AGCCC-TAT----T----TGAGTTGGA
i taeGut2.chr1                 I 16 N 0

a score=76044.000000
s hg38.chr8_KI270814v1_alt        125146 23 +    141812 -AATATTAAGTTAAT---CAGCAGATT
s panTro4.chr8                  55027629 23 + 143986469 -AATATTAAATTAAT---CAGCAGATT
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59168215 23 + 153482349 -AATATTAAATTAAT---CAGAAGATT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81384075 20 - 104879549 -GATATTAAATTAAT------AACATT
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61695157 23 + 150158102 -AATATTCAATTTAT---CAGAAGATT
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58368992 23 + 146850525 -AATATTCAATTTAT---CAGAAGATT
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53289630 23 + 139301422 -AATATTCAATTTAT---CAGAAGATT
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33710895 20 + 155834243 -AATATTAAATTGTT------AACATT
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4068104 20 +   9144518 -aatattagattaat------aatatt
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1566931 20 -   1847653 -aatattaaattact------aaaatt
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1183408 26 -   7152218 -AAGATTAACTTAATAAGAAGAGGATT
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                 11754 26 -     34802 -AATATTAACTTAATAAGAAGAAGATT
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2917670 23 -  11690531 ----ATTAAATTAGTAAGAAGAGGATT
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10878084 23 +  33672925 -AAGGTTGAATTCAT---AAGAGGATT
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9910975 26 +  34209287 -AAGATTAAATTAATAAAAAGAGGATT
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3123692 21 -   3193751 -AA--T---ATTAATAAGAGGAGGATT
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                241993 24 -   2104649 -AA--TTAAGTTAATAAGAAGAGGATT
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39457940 25 -  55688157 -AAGATTAAATTATA-TGAAGAGGATT
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 23913 25 +   6345240 -AAAATTAAGTTGTC-AGAAGAGGATT
i triMan1.JH594766             C 0 C 0
s monDom5.chr8                 137895729 20 - 312544902 -ATCACTTTGGGAAC------ATTAAT
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    320882 20 -   4230514 -GACATTTAGTTAAT------AGCAAT
i sarHar1.chr5_GL861647_random C 0 C 0
s macEug2.GL108065                 85569 20 -    187545 -AACTCGTAGTGAAC------AACAAT
i macEug2.GL108065             C 0 C 0
s ornAna1.Ultra479               3872609 24 -   6008416 GAATCTTTAGAAACT---CACCAGAGT
i ornAna1.Ultra479             C 0 N 0

a score=778700.000000
s hg38.chr8_KI270814v1_alt        125169 218 +    141812 AG------C------TTATATT------TATTGGATTATAGTGGAAAATATCAAAACAAATCACCAGTTAGGTAGAAA-AGCAATTACTT-GG---A--CTGGGCAACATAAAGAACATATGTATATGATAGGA----------TTTATATTCTCTTAT-----T-ATATTGGCTGATG----TTATTTACAATCTGA--------T-GTTTTTGTCACAT-------------TATCTT-CTATTAG-T-AAAG-GGTTTTG--------------TATTAGT---------TTTA--------TAAAATATGAAATTT
s panTro4.chr8                  55027652 216 + 143986469 AG------C------TTATATT------TATTGGATTATAGTGGAAAATATCAAAACAAATCACGAGTTAGGTAGAAA-AGCAATTACTT-GG---A--CTGGGCAACATAAAGAACATATGTATATGATAGGA----------TTTATATTCTCTTAT-----T-ATATTGGCTGATG----TTATTTGCAATCTG-----------TTTTTGGTCACAT-------------TATCTT-CCATTAG-T-AAAG-GGTTTTG--------------TATTAGT---------TTTA--------TAAAATATGAACTTT
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59168238 219 + 153482349 AG------C------TTATAAT------TATTGGATTATAGTGGAAAATATCAAAACAAATCACCAGTTAGGTAGAAA-AGCAATTACTT-GG---A--CTGGGCAATATAAAGAACATATGTATATGATAGGA----------TTTATATTCTCTTAT-----T-ATATTGGCTGATG----TTATTTGCAATCTGA--------TGTTTTTGGTCACAT-------------TGTCTT-CTATTAG-T-AAAG-GGTTCTG--------------TATTAGT---------TTTA--------TAACATATGAACTTT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81384095 212 - 104879549 TA------C------TTAAAAT------TATTAGATTATACAGAAAAATACCAACACAAATTATCAGTTAGGAAGAAA-AGCAATCATTT-GG---A--CTGGTCAACATAAAGAACA---GTATATAGTAGGA----------TTT-TCTTCTTTTAT-----T-ATATTGACTGATTC---TTATTTGTAATCTGA--------TGTTTTTGGTTGCAT-------------TATCTT-CTATTAGCT-AAAGTGGTTCTG--------------TATTAGT---------TTTA--------AGAAGTATG------
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61695180 213 + 150158102 AG------CT-----TTATAAT------TATTGGATTATAGTGGAAAATATCAGCACAAATCACCAGTTAGGTAGAAA-AGCATTTACTT-GG---A--CTGGGCAACATAAAGAACATATGTATATGACAGGA----------TTTATATTCTCTTAT-----T-ATATTGGCTGATG----TTATTTGCAATCTGA--------TGTTTTAGGTCACAT-------------TATCTT-CT-TCAG-T-AAAG-GGT--------------------TTAGT---------TTTA--------GGACATATGAACTAT
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58369015 213 + 146850525 AG------CT-----TTATAAT------TATTGGATTATAGTGGAAAATATCAACACAAATCACCAGTTAGGTAGAAA-AGCATTTACTT-GG---A--CTGGGCAACATAAAGAACATATGTATATGACAGGA----------TTTATATTCTCTTAT-----T-ATATTGGCTGATG----TTATTTGCAATCTGA--------TGTTTTAGGTCACAT-------------TATCTT-CT-TCAG-T-AAAG-GGT--------------------TTAGT---------TTTA--------GGACATATGAACTAT
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53289653 212 + 139301422 AG------C------TTATAAT------TATTGGATTATAGTGGAAAATATCAACACAAATCACCAGTTAGGTAGAAA-AGCATTTACTT-GG---A--CTGGGCAACATATAAAACATATGTTTATGACAGGA----------TTTATATTCTCTTAT-----T-ATATTGGCTGATG----TTATTTGCAATCTGA--------TGTTTTAGGTCACAT-------------TATCTT-CT-TCAG-T-AAAG-GGT--------------------TTAGT---------TTTA--------GGACATATGAACTGT
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33710915 210 + 155834243 TA------C------TTAAAAT------TGATA-GCTTAAGTGAAAAATACCAACACAAATTATCAGTTAGGAAGAAA-AGT-CTTATTT-GG---A--CTGGTCAATACAAAGAACA---GGATACAGTAAGA----------TTTATCTTCCCTTTT-----T-ATATTGACTG---------ATTTGTAATCTAA--------TATTTTTGGTTGCAT-------------TATCTT-CTATTAGCT-AAAG-TGTTTTTA-------------TGTTAGT---------TTTA--------AGAAGTATGAACTT-
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4068124 222 +   9144518 aa------c------ttataat------tattGTGATATAGTAAAAAATATCAACACAAATCATTGGTTAAGTAGAAA-AA---CTATTT-AG---G--GTGGGCAACATAGAGAACA---GTATATAGGAGGA----------TTCATCTTTTCTTAT-----T-ATATTGACCGGTGTTTGTTATTTGTAATGTGA--------TGTTTTTGGTCATAT-------------GATC-------TAACC-AAAG-GGGTTTTATATTGGT----TTTATTAGT---------TTTA--------TGAAATGTGGATTTT
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1566951 231 -   1847653 aa------c------ttataat------tattGAGATGTTGTACAAAGTATCAATACAAACCATC----ATGTAGAAA-AGCAATTATTT-GG---C--CCGGGCAACATAAAGAACA---GTATATACTAGAA----------TTTATCTTCTCTTAT-----T-ACATTAATCAGTGCATGTTATTTGTAATCTAA--------TGTTTGTGGTCCTAT-------------GAACTT-ATATTAGCT-AAAG-GGATTTTGTATTCCTTTTATTTTGTGAT---------ATGA--------TAATATGTGGATTTT
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1183434 191 -   7152218 GA------C------TTAGA-----------------------------ATCAACAC--ATCTTCAGTTAGGTAGAAA-AGCAATTATTC-TG---C--CTGGGTGTCACAAAGAACA---GTATGTAGCAGGA----------TTCGTCTTCCTTTAT-----A-ATAGTGACTGATA----TCATTTGCAACCTGA--------TTTTTTTGGTC--AT-------------GATCTTAATAATAGTT-CAGG-GATCTCA--------------TTTTAGT---------TTTA--------TAAAGCATAGACTCT
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                 11780 193 -     34802 GA------C------TTAGA-----------------------------ATCAACAC--ATCCTCAGTTAGGTAGAAA-AGCAATTATTC-TG---C--CTGGGTGTCACAAAGAACA---GTATGTAGCAGGA----------TTCATCTTCCTTTAT-----A-ATACTGACTAATG----TTGTTTGCAACCTGA--------TTTTTTTGGTCATAT-------------GATCTTAATAATAGTT-CAGG-GATCTCA--------------TTTTAGT---------TTTA--------TAAAGTATAGACTCT
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2917693 205 -  11690531 AA------T------GTATA-----------------------------ATCAACAC--ATCATC----AGGTCGAAA-AGCAATTACTC-TG---A--CTGTGTATCATGAAAAATA---ATATATAGCAGGA----------TTCATATTCCTTTAT-----A-ATATTGACTGATA----TCATTTGCAACCTGATTTTCTTCTTTTTTTGGTCACAC-------------GATCTT-ATAATAGCT-AAGG-GATTTCG--------------TATTAGTTTTATTAGCTTTA--------TAAAATACGGATTCT
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10878107 198 +  33672925 AA------C------TTATG------------------TAGTGAAAAATATCAACAC--ATCATCAGTTGTGTAGAAA-AGCAATTATTC-TG---A--CTGGGTAACAT---GAACA---GTATTTAGCAGGA----------TTCATGTTCCTTCAT-----A-ATACTGGCTGATG----TCGTTTGCAATCTGA--------TTTTTT-GGTCGTAT-------------GATTTT-TTATTACCTAAAGG-GGTTTCA--------------TATTTGT---------TTTA--------TAAAATATAGA--CT
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9911001 209 +  34209287 AA------CTTACAATTATA------------------TAGTGAAAAATATCAACAC--ATCATCTAATATATGGAAA-AGCAATCGTTC-TG---A--CTGGGCAACATGAAGAACA---GTATATAGCAGGA----------TTCATATTCCTTCAT-----A-GTACTGACTGATG----TCATTTAGAATCTGA--------TTTTTT-GGTCATAT-------------GATTTT-ATATTAGCTAAAGG-GGTTTCA--------------TATTAGT---------TTTA--------TAAAGTATAGATTCT
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3123713 207 -   3193751 AA------C------ATATA------------------TAGTGAAAAATATCAACAC--ATCATCTGTTTGGTAGAAA-AGCAATACTTC-TG---G--CTGGGCAACAGGGAGAACC---G----TACACTGAGGTATTCATGTTCATATTTATTTAT-----A-ATATTGATTGGTG----CCATTTGTAATTTGA--------TTTCTTTGGTCACATATATTATCTTAGGAGTTTT-ATATTACAT------------T--------------TATTAGT---------TTTA--------TA-TATATAAA----
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                242017 198 -   2104649 AATTTATCT------TTATA------------------TAGTGAACAATATCAACAC--ATCA---GTTAGGTAGAAA-AGCAATTATTC-TGACTA--CTGGGCAACTGGAAAAAC-----------AAATGA----------TTCATATTCATTTAT-----A-ATATTAACTGATG----TCATTTGTAATATGA--------TTTTTTGAGTCATAT-------------GGTCTT-ACATTAAATAGAGG-GGCTTAT--------------TATTAAT---------TTTA--------TAGTATATGGA----
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39457965 197 -  55688157 AA------T------TTATAAT------TATTTGCATATAGTG-AAAATGTCAGCACTAATCACCAGTTAGGTAGAAA-AGCAATTATTC-TG---A--CTGCATAACATGAAGAACA---GGATATAGTGGAA----------TTCCTGTTCCTTTAT-----ATTTACTGA---------------------------------TTTTTTTTGTCTTAT-------------GATCTT-ATATTAGCTAAAAG-GGTTTCA--------------TATTAGT---------TTCA--------TAAAGGACAGACTCT
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 23938 197 +   6345240 AA------T------TTATAAT------TGTTTGCATATAGTG-AAAATATCAACACAAATCACCAGTTCGGTAGAAA-AGCAATTATTC-TG-------------TTGTGAAGAACA---GGATATAGTAGGA----------CTCATATTCCTTTAT-----A-ATACTGATT--------TT---------------------TTTTTTTTGTTATAT-------------GATGTT-ATAGTAGCTAAAAG-AGTTTCA---------TATTTTATTAGA---------TTTC--------TAAAGTACAGACTCT
i triMan1.JH594766             C 0 C 0
s monDom5.chr8                 137895749 198 - 312544902 AA------T------TAAAATT-------ATAGGAAAAGAGTGAAAAATATCAACAAATATCAGCTGT--GAAAAGAA-AAAACTTACTTTTT---A--TTT--CAACATAGAAAGCA---ATT--------------------TTCACATGTCTATGCCAATCA-CCATTTATTGATGATTACTATTTGTAATCTGC--------TTTATT--------T-------------GA-----AAGTTGGTTAAAAT-TATCCCA--------------TAAAAGT---------TTTG----------TACTCGTGATTT-
i monDom5.chr8                 C 0 I 5
s sarHar1.chr5_GL861647_random    320902 197 -   4230514 AA------T------TGAAATTGATTATTATTGCAAAAGGATGAACTAAATCCCCATATATCaactat--gaaaggaaaaataattatttatg---a--cTG--CAA---------CA---G----------------------CTCATG-------GC--TTTG-ATATCACTTATTACATCAAAGTCATTATTact--------tttatc--------t--------------atttc-tattcATTGTGCAT-ATTCCCA--------------TGGC--C---------TTTGGTACTAtctataattttgattc-
i sarHar1.chr5_GL861647_random C 0 I 3640
s macEug2.GL108065                 85589 215 -    187545 AA------T------TGAAATTGATCATCATTGTGAAAAGGTGAAA-ATGTCCACAAACATCAATTAT--GAAAG----AACTATTATTTATG---ATTCTG--CAACAGAGAAAGCA---G----------------------TTCATGTGGGCATGCCATCCA-ATGTCAATTGCTGATTTCTATTTACAGTTTTC--------ACTATT--------T-------------GATTTT-AAGTTACTTAAGAT-CATCACA--------------TAGAAGT---------TTTTGCATTAGTAATGCAATTGATTC-
i macEug2.GL108065             C 0 I 12

a score=31253.000000
s hg38.chr8_KI270814v1_alt        125387 14 +    141812 AACTTTC--------AG-TTTGC
s panTro4.chr8                  55027868 14 + 143986469 AACTTTC--------AG-TTTGC
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59168457 14 + 153482349 AACTTTC--------AG-TTTGC
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81384307 14 - 104879549 AATTTTT--------AG-TTTAC
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61695393 14 + 150158102 AACTTTT--------AG-TTTGC
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58369228 14 + 146850525 AACTTTT--------AG-TTTGC
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53289865 14 + 139301422 AACTTTT--------AG-TTTGC
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33711125 10 + 155834243 ---TTTT--------AG-TTTA-
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4068346 14 +   9144518 AACTTTT--------AG-TATAC
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1567182 14 -   1847653 AACTTTC--------AG-TTTAC
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1183625 13 -   7152218 AA-TTTT--------AA-TTTAC
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                 11973 13 -     34802 AA-TTTT--------AA-TTTAC
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2917898 14 -  11690531 ACTTTTT--------AA-TTTAC
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10878305 14 +  33672925 AACTTTT--------AG-TTTAC
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9911210 14 +  34209287 AACTTTT--------AG-TGTAC
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3123920 13 -   3193751 --GTCTA--------AATTTTAG
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                242215 12 -   2104649 --CTCTT--------AG-TTTAC
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39458162  9 -  55688157 CAGTTTT--------AG------
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 24135 14 +   6345240 AAATTTT--------AG-TTTAC
i triMan1.JH594766             C 0 C 0
s monDom5.chr8                 137895952  6 - 312544902 -ATTCTC----------------
i monDom5.chr8                 I 5 C 0
s sarHar1.chr5_GL861871_random     23829  6 -    229675 -AATCTC----------------
i sarHar1.chr5_GL861871_random n 3640 C 0
s macEug2.GL108065                 85816 14 -    187545 -AATCTTCATGTTAC--------
i macEug2.GL108065             I 12 N 0

a score=88578.000000
s hg38.chr8_KI270814v1_alt        125401 12 +    141812 TTAT----TGATTCAA
s panTro4.chr8                  55027882 12 + 143986469 TTAT----TGATTCAA
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59168471 12 + 153482349 TTAT----TGATTCAA
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81384321 12 - 104879549 TTTA----TAATTCAA
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61695407 12 + 150158102 TTAT----TGATTCAA
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58369242 12 + 146850525 TTAT----TGATTCAA
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53289879 12 + 139301422 TTAT----TGATTCAA
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33711135  8 + 155834243 --------TAATTCAA
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4068360 16 +   9144518 TTTAAGACTTAATAAA
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1567196 12 -   1847653 TTTA----TACCTCAA
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1183638 12 -   7152218 CTTA----TGACACAG
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                 11986 12 -     34802 CTTA----TGACACAG
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2917912 12 -  11690531 CTTA----TGACACAG
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10878319 12 +  33672925 TTTA----TGACGCAA
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9911224 12 +  34209287 TTTA----TGACACAG
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3123933 12 -   3193751 TTTA----TGATACAG
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                242227 12 -   2104649 TTTA----TGATACAA
i myoLuc2.GL429990             C 0 I 249
s loxAfr3.scaffold_15           39458171 12 -  55688157 TTTA----TGATGCAG
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 24149 12 +   6345240 TTTA----TGATGCAA
i triMan1.JH594766             C 0 C 0
s monDom5.chr8                 137895958 12 - 312544902 TTTT----TGAAATAA
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861871_random     23835 12 -    229675 TTTA----TGAAATAA
i sarHar1.chr5_GL861871_random C 0 C 0

a score=319496.000000
s hg38.chr8_KI270814v1_alt        125413 71 +    141812 ---TATTGAA-TTAT----TATTTTATAGTA--TT-----TCTCTACCTTCTGCTTTTTATATACTTTT--TCtataaaatgtaatat-
s panTro4.chr8                  55027894 75 + 143986469 ---TATTGAA-TTATTAAGTATTTTATAGTA--TT-----TCTCTACCTTCTGCTTTTTATATACTTTT--TCTATAAAATGTAATAT-
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59168483 75 + 153482349 ---TATTGAA-TTATTAAGTATTTTATAGTA--TT-----TCTCTACCTTCTGCTTTTTATATACTTTT--TCTATAAAATGTAATAT-
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81384333 72 - 104879549 ---AATTGAA-TAATTAACACCTTTATAGTA--TT-----TTTCTAACTTCTGTTTTTCATACACTTT-----TAAAAAATGCAATAT-
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61695419 74 + 150158102 ---TATTGAA-TTATTAAGTATTTTATAGTA--TT-----TATCTACCTTCTGCTTTT-GTATACTCTT--TGTATAAAATGTAATAT-
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58369254 74 + 146850525 ---TATTGAA-TTATTAAGTATTTTATAGTA--TT-----TATCTACCTTCTGCTTTT-GTATACTCTT--TGtataaaatgtaatat-
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53289891 70 + 139301422 ---TATTGAA-TTATTAAGTATTTTATAGTA--TT---------TACCTTCTGCTTTT-GTATACTCTT--TGtataaaatgtaatat-
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33711143 70 + 155834243 ---TATTGAA-TGATTAACACATTTATAGTA--TT-----TTTCTAGCTTCTCTTTTTCATACA-------CTTAAAAAATGCAATGT-
i calJac3.chr7                 C 0 I 310
s saiBol1.JH378196               4068376 79 +   9144518 ---TATTGAACTTCTTAACCCTTTCATAGTAGTTT-----TTTTTAACCTCTGTTTCTTATATGCTCTT-CCTTTAAACATGCTGTAT-
i saiBol1.JH378196             C 0 I 1
s otoGar3.GL873762               1567208 76 -   1847653 ---TATTGAACTTCTTAATCATTTTCTA-TA--TT-----TTTCTAACCTCTGCTGCTTATATTCTTTC-CCTTTAAAAACACTGTGT-
i otoGar3.GL873762             C 0 I 1
s vicPac2.KB632521               1183650 77 -   7152218 ---TATTAGATTTCTTAATTCTTTTATAATA--AT-----TTTTTAACCTCTACTTTGTATATATTTTTGTCTTAAAAGATGC-ATAT-
i vicPac2.KB632521             C 0 I 1
s camFer1.KB018161                 11998 77 -     34802 ---TATTAGATTTCTTAATTCTTTTATAATA--AA-----TTTTTAACCTCTACCTTGTATATATTTTTGTCTTAAAAGATGC-ATAT-
i camFer1.KB018161             C 0 I 1
s orcOrc1.KB316915               2917924 76 -  11690531 ---TATTGAATTTCTTAATTCTTTTAGAATA--AT-----TTTTTAACCTCTACTTTGTATATATTTTT-CCTTAAAAGATGC-ATGT-
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10878331 75 +  33672925 ---TATTGAAGTTCTTAACCCTTTTATAGT---AT-----TTTTTAACCTCTACTTCATATATATTTTT-CCTTAAAAGATGC-ATGT-
i equCab2.chr29                C 0 I 1
s cerSim1.JH767738               9911236 73 +  34209287 ---TATTGAAGTTCTGAAACCTTTTATGTA---TT-----TTTTTAACCTCTCCTTCATAAATATTTTT-CCTT--AAGATGC-ATAT-
i cerSim1.JH767738             C 0 I 1
s pteAle1.KB031146               3123945 67 -   3193751 ---TATTGAA---CTTAGTCT-----CAGT---TT-----TTTTAAACCTCTAATTTGCATACAGTTTT-TTTTATAAGATGT-ATAT-
i pteAle1.KB031146             C 0 I 1
s loxAfr3.scaffold_15           39458183 75 -  55688157 ---TATTGAACTTCTTAACCCTTA-GTAGTA---T-----TTTTTAACCTCTGCTTCTTATATACTTTT-CCTTAAAAGATGCTATAT-
i loxAfr3.scaffold_15          C 0 I 1
s triMan1.JH594766                 24161 77 +   6345240 ---TATTGAACTTCTTAACCTTTATGTAGTA--TT-----TTTTTAACCTCTACTCCTTATATACTTTT-CCGTAAAAGTTGCTATAT-
i triMan1.JH594766             C 0 I 1
s monDom5.chr8                 137895970 81 - 312544902 TCTTAGTGCCATTTATGAGAATT---GTATG--TAGCCTGTTTTCTCCTCATGCTTCCTATGATTTTCT--TTAAGAATATAC-ACATT
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861871_random     23847 79 -    229675 TCTTGATGTCACCCATGAGGATTTTAGCATG--TA-----TTTTCTGCTCCTTCTTATTTCAGTTTCCA--TTAAGAATATGC-ACATT
i sarHar1.chr5_GL861871_random C 0 C 0
e myoLuc2.GL429990                242239 249 -   2104649 I

a score=3600.000000
s hg38.chr8_KI270814v1_alt        125484 1 +    141812 g
s panTro4.chr8                  55027969 1 + 143986469 G
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59168558 1 + 153482349 G
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81384405 1 - 104879549 G
i nomLeu3.chr18                C 0 I 184
s rheMac3.chr8                  61695493 1 + 150158102 G
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58369328 1 + 146850525 g
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53289961 1 + 139301422 g
i chlSab2.chr8                 C 0 C 0
s monDom5.chr8                 137896051 1 - 312544902 G
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861871_random     23926 1 -    229675 G
i sarHar1.chr5_GL861871_random C 0 C 0
e myoLuc2.GL429990                242239 249 -   2104649 I
e vicPac2.KB632521               1183727 1 -   7152218 I
e camFer1.KB018161                 12075 1 -     34802 I
e calJac3.chr7                  33711213 310 + 155834243 I
e equCab2.chr29                 10878406 1 +  33672925 I
e triMan1.JH594766                 24238 1 +   6345240 I
e loxAfr3.scaffold_15           39458258 1 -  55688157 I
e pteAle1.KB031146               3124012 1 -   3193751 I
e cerSim1.JH767738               9911309 1 +  34209287 I
e orcOrc1.KB316915               2918000 0 -  11690531 C
e otoGar3.GL873762               1567284 1 -   1847653 I
e saiBol1.JH378196               4068455 1 +   9144518 I

a score=334349.000000
s hg38.chr8_KI270814v1_alt        125485 68 +    141812 aatcataaataggaattgaaaatTATTTTGT-GTTTTGGATGACTGTTTGCTTTAA------GGTGATTTATTTG--
s panTro4.chr8                  55027970 68 + 143986469 AATCATAAATAGGAATTGAAAATTATTTTGT-GTTTTGGATGACTGTTTGCTTTAA------GGTGATTTATTTG--
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59168559 68 + 153482349 AATCATAAATAGGAATTGAAAATTATTTTGT-GTTTTGGGTGACTGTTTGCTTTAA------GGTGATTTATTTG--
i ponAbe2.chr8                 C 0 C 0
s rheMac3.chr8                  61695494 64 + 150158102 AATCATAAATAGGAATTGAAAATTATTTTGT-GTTTTGGATGAC----TGCTTTAA------GATGATTTATTTG--
i rheMac3.chr8                 C 0 I 233
s macFas5.chr8                  58369329 68 + 146850525 aatcataaataggaattgaaaatTATTTTGT-GTTTTGGATGACTGTTTGCTTTAA------GATGATTTATTTG--
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53289962 66 + 139301422 aatcataaataggaattgaaaatTATTT--T-GTTTTGGATGACTGTTTGCTTTAA------GATGATTTATTTG--
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33711523 67 + 155834243 AGTCAAAAATAGGAGTTTCAAATCATTTTGT-CTTTAGGATGACTAT-TGCTTTAA------GTTCTTTTCTTTG--
i calJac3.chr7                 I 310 C 0
s saiBol1.JH378196               4068456 63 +   9144518 AGACATAAATAGGAGTTGAAAATCATTATTT-CTTCTAGATGACT-----TTTAAA------GTTGCTTCCTTTG--
i saiBol1.JH378196             I 1 C 0
s otoGar3.GL873762               1567285 68 -   1847653 AACCATAAATAGGACTTTAAATTCATTTTGT-CCTTTAGATGAGTCTTTGCTTTAA------GTTGCTTTCTTTG--
i otoGar3.GL873762             I 1 C 0
s vicPac2.KB632521               1183728 59 -   7152218 AAACAGAG--AGGAATTT------GTTTTGTCTTTTTGGATGACTC--TGCTTTAA------ATTACTTTCTTTG--
i vicPac2.KB632521             I 1 C 0
s camFer1.KB018161                 12076 59 -     34802 AAACAGAG--AGGAATTT------GTTTTGTCTTTTTGGATGACTC--TGCTTTAA------ATTACTTTCTTTG--
i camFer1.KB018161             I 1 C 0
s orcOrc1.KB316915               2918000 37 -  11690531 --------------------------------CTTTGGGATGACTCTTTGCTTTAA------ATTACTTTCTTTG--
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10878407 62 +  33672925 AAACATAAGTAGAAATTG------ATTTTGT-CTTTTGGATGACTCTTTGCTTTAA------ATTTCTTTCTTTG--
i equCab2.chr29                I 1 C 0
s cerSim1.JH767738               9911310 62 +  34209287 AAACATAAATAGGAGTTG------ATTTTGT-CTTTTGGATGACTCTTTCCTTTAA------ATTGCTTTCTTTG--
i cerSim1.JH767738             I 1 C 0
s pteAle1.KB031146               3124013 62 -   3193751 AAACAGAAATAAGATTTG------ATTTTGT-CTTTCGGATGACTCTTTGCTTTAA------ACTGCTTTCTTTG--
i pteAle1.KB031146             I 1 C 0
s loxAfr3.scaffold_15           39458259 66 -  55688157 AAACATAAATAGGAGTTGAATATCAGTTTAT-CTTTTGGATGACT--CTGCTTAAA------ATTGCTTACTTTG--
i loxAfr3.scaffold_15          I 1 C 0
s triMan1.JH594766                 24239 64 +   6345240 AAACATAAATAGGAGTTGAGTATCATTTTGT-CTTTTGGATGA----CTGCTTTAA------ATTGCTTACTTTG--
i triMan1.JH594766             I 1 C 0
s monDom5.chr8                 137896052 65 - 312544902 -----------AAAGTCATAAATTAATACAA-GAATAATATGATGAaatactttgatggaatgatcttatcatcgtg
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861871_random     23927 65 -    229675 -----------ACAAATGCAGATAAATTAAA-GCATGATATGATAGAATACTTTGATGGACCCTTGATCTAATTGTG
i sarHar1.chr5_GL861871_random C 0 C 0
e myoLuc2.GL429990                242239 249 -   2104649 I
e nomLeu3.chr18                 81384406 184 - 104879549 I

a score=17770.000000
s hg38.chr8_KI270814v1_alt        125553 3 +    141812 AAA
s panTro4.chr8                  55028038 3 + 143986469 AAA
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59168627 3 + 153482349 AAA
i ponAbe2.chr8                 C 0 C 0
s macFas5.chr8                  58369397 3 + 146850525 AAA
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53290028 3 + 139301422 AAA
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33711590 3 + 155834243 AAG
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4068519 3 +   9144518 AAA
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1567353 3 -   1847653 AAG
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1183787 3 -   7152218 AAG
i vicPac2.KB632521             C 0 I 3
s camFer1.KB018161                 12135 3 -     34802 AAG
i camFer1.KB018161             C 0 I 3
s orcOrc1.KB316915               2918037 3 -  11690531 AAG
i orcOrc1.KB316915             C 0 I 3
s equCab2.chr29                 10878469 3 +  33672925 AAG
i equCab2.chr29                C 0 I 3
s cerSim1.JH767738               9911372 3 +  34209287 AAG
i cerSim1.JH767738             C 0 I 3
s pteAle1.KB031146               3124075 3 -   3193751 AAG
i pteAle1.KB031146             C 0 I 3
s loxAfr3.scaffold_15           39458325 2 -  55688157 -AC
i loxAfr3.scaffold_15          C 0 I 1
s triMan1.JH594766                 24303 2 +   6345240 -AC
i triMan1.JH594766             C 0 I 1
e myoLuc2.GL429990                242239 249 -   2104649 I
e sarHar1.chr5_GL861871_random     23992 0 -    229675 C
e monDom5.chr8                 137896117 0 - 312544902 C
e nomLeu3.chr18                 81384406 184 - 104879549 I
e rheMac3.chr8                  61695558 233 + 150158102 I

a score=73546.000000
s hg38.chr8_KI270814v1_alt        125556 13 +    141812 AATATTAATGTCA
s panTro4.chr8                  55028041 13 + 143986469 AATATTAATGTTA
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59168630 13 + 153482349 AATATTAATGTTA
i ponAbe2.chr8                 C 0 C 0
s macFas5.chr8                  58369400 13 + 146850525 AATATTAATGTTA
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53290031 13 + 139301422 AATATTAATGTTA
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33711593 13 + 155834243 AATAGTTATGTTA
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4068522 13 +   9144518 AATAGTGATGTTA
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1567356 13 -   1847653 AATATTAGTGTTT
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1183793 13 -   7152218 ACTGATGTTATTA
i vicPac2.KB632521             I 3 C 0
s camFer1.KB018161                 12141 13 -     34802 ACTGATGTTATTA
i camFer1.KB018161             I 3 C 0
s orcOrc1.KB316915               2918043 13 -  11690531 ACTGATGTTATTA
i orcOrc1.KB316915             I 3 C 0
s equCab2.chr29                 10878475 13 +  33672925 GTTGATGTTGTTA
i equCab2.chr29                I 3 C 0
s cerSim1.JH767738               9911378 13 +  34209287 ACTGATGTTATTA
i cerSim1.JH767738             I 3 C 0
s pteAle1.KB031146               3124081 13 -   3193751 ACTGGTGATGTTA
i pteAle1.KB031146             I 3 C 0
s myoLuc2.GL429990                242488 13 -   2104649 AACCTTTTTATTT
i myoLuc2.GL429990             I 249 C 0
s loxAfr3.scaffold_15           39458328 13 -  55688157 AATGTTGACATTA
i loxAfr3.scaffold_15          I 1 C 0
s triMan1.JH594766                 24306 13 +   6345240 GATATTGATGTTA
i triMan1.JH594766             I 1 C 0
s monDom5.chr8                 137896117 13 - 312544902 aatattttttata
i monDom5.chr8                 C 0 I 8
s sarHar1.chr5_GL861871_random     23992 13 -    229675 AATACTCATGACA
i sarHar1.chr5_GL861871_random C 0 I 3673
e nomLeu3.chr18                 81384406 184 - 104879549 I
e rheMac3.chr8                  61695558 233 + 150158102 I

a score=114842.000000
s hg38.chr8_KI270814v1_alt        125569 17 +    141812 ---GGTTATCCCTAAGTGAC-
s panTro4.chr8                  55028054 17 + 143986469 ---GGTTATCCCTAAGTGAC-
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59168643 17 + 153482349 ---GGTTATCCCTAAGTGAC-
i ponAbe2.chr8                 C 0 C 0
s macFas5.chr8                  58369413 17 + 146850525 ---GGTTATCCCTAAGTGAT-
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53290044 17 + 139301422 ---GGTTATCCCTAAGTGAT-
i chlSab2.chr8                 C 0 I 1
s calJac3.chr7                  33711606 17 + 155834243 ---GGTTATCCCTACATGAC-
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4068535 17 +   9144518 ---AGTTATTCCTACATGGC-
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1567369 17 -   1847653 ---AGTAATCCCTAAGTCAC-
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1183806 17 -   7152218 ---GGTTATCACTAAGTGAG-
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                 12154 17 -     34802 ---GGTTATCACTAAGTGAG-
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2918056 17 -  11690531 ---GGTTATCACTAAGTGAT-
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10878488 17 +  33672925 ---GGTTATTCCTAAGTGAC-
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9911391 17 +  34209287 ---GGTTATTCGTAAATGAC-
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3124094 17 -   3193751 ---GTTTATGCCTAAGTTAC-
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                242501 17 -   2104649 ---GGTTATCCCTAAGTGAC-
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39458341 17 -  55688157 ---CATTGTTCTTTTGTGAC-
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 24319 17 +   6345240 ---GTTTATTCATTTGTGGC-
i triMan1.JH594766             C 0 C 0
s monDom5.chr8                 137896138 21 - 312544902 gatttttattccttccatgct
i monDom5.chr8                 I 8 C 0
e sarHar1.chr5_GL861871_random     24005 3673 -    229675 I
e nomLeu3.chr18                 81384406 184 - 104879549 I
e rheMac3.chr8                  61695558 233 + 150158102 I

a score=263838.000000
s hg38.chr8_KI270814v1_alt        125586 47 +    141812 T--------ATTAATTGTTACCACC----ACTGTGAATTCATCA--TTTTATTTCTTTTTA--
s panTro4.chr8                  55028071 47 + 143986469 T--------ATTAATTGTTACCACC----ACTGTGAATTCATCA--TTTTATTTCTTTTTA--
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59168660 47 + 153482349 T--------ATTAATTGTTACCACC----ACTGTGAATTCATCA--TTTTATTTCTTTTTA--
i ponAbe2.chr8                 C 0 C 0
s rheMac3.chr8                  61695791 47 + 150158102 T--------ATTAATTGTTACCACC----ACTGTGAATTCATCA--TTTTATTTCTTTTTA--
i rheMac3.chr8                 I 233 C 0
s macFas5.chr8                  58369430 47 + 146850525 T--------ATTAATTGTTACCACC----ACTGTGAATTCATCa--ttttatttcttttta--
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53290062 47 + 139301422 T--------ATTAATTGTTACCACC----ACTGTGAATTCATCA--TTTTATTTCTTTTTA--
i chlSab2.chr8                 I 1 C 0
s calJac3.chr7                  33711623 46 + 155834243 T--------ATAAATTGCTGTCACCAGATACTGTGAAttta-------tttttattttttt--
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4068552 51 +   9144518 T--------GTTAATTGCTGTTACCAGGTACTTTGGGTTCATTA--GTTTTCTTCTATTTC--
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1567386 53 -   1847653 T--------CTTAATTGCTATTACCAGGTACTGTGGGTTCACCAGTTTTTTTTCCTTTTTC--
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1183823 59 -   7152218 TATCACTAAGTGATTAATTATTACCAGATACTGTGGGCTCATCA--GTTTTTATCCTTTTT--
i vicPac2.KB632521             C 0 I 1
s camFer1.KB018161                 12171 59 -     34802 TATCACTAAGTGATTAATTATTACCAGATACTGTGGGCTCATCA--GTTTTTATCCTTTTT--
i camFer1.KB018161             C 0 I 1
s orcOrc1.KB316915               2918073 51 -  11690531 T--------GTTAATCACTATTACCAGATACTTTGGGCTCATCA--GTTTTTATCCTTTTT--
i orcOrc1.KB316915             C 0 I 204
s equCab2.chr29                 10878505 51 +  33672925 T--------ATTAATTGCTATTACCAGATACTATGGGCTCATCA--GTTTTTATCCTTTTT--
i equCab2.chr29                C 0 I 1
s cerSim1.JH767738               9911408 51 +  34209287 T--------ATTAATTACTATTACCAAATACTATGGGCTCATCA--ATTTTTATCCTTTTT--
i cerSim1.JH767738             C 0 I 1
s pteAle1.KB031146               3124111 46 -   3193751 T--------ATGAATTATTGCTCCCAGA---TATAGGTTCATCA--GTTTTTACCCTCT----
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                242518 51 -   2104649 T--------ATGAATTACTGCTACCAGACACTGTGGGCTCATCA--GTTTTTATCCTTTTT--
i myoLuc2.GL429990             C 0 I 1
s loxAfr3.scaffold_15           39458358 47 -  55688157 ------------TATTACTGTTACCAGACACTGTGGACTTGTCA--GTTTTTATCTTTTTC--
i loxAfr3.scaffold_15          C 0 I 1
s triMan1.JH594766                 24336 44 +   6345240 ------------TATTACTATTACCAGAAACTATGGGCTTGACA--G---TTATCTTTTTC--
i triMan1.JH594766             C 0 I 1
s monDom5.chr8                 137896159 38 - 312544902 --------------------ttctcattcagtgtg-atttat----gtctttgtctttccata
i monDom5.chr8                 C 0 C 0
e sarHar1.chr5_GL861871_random     24005 3673 -    229675 I
e nomLeu3.chr18                 81384406 184 - 104879549 I

a score=46265.000000
s hg38.chr8_KI270814v1_alt        125633 6 +    141812 ACTTAT
s panTro4.chr8                  55028118 6 + 143986469 ACTTAT
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59168707 6 + 153482349 ATTTAT
i ponAbe2.chr8                 C 0 C 0
s rheMac3.chr8                  61695838 6 + 150158102 ATTTAC
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58369477 6 + 146850525 atttac
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53290109 6 + 139301422 ATTTAT
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33711669 6 + 155834243 gttcat
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4068603 6 +   9144518 ATTTCT
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1567439 6 -   1847653 ACTTCT
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1183883 6 -   7152218 CTATCT
i vicPac2.KB632521             I 1 C 0
s camFer1.KB018161                 12231 6 -     34802 ATTTCT
i camFer1.KB018161             I 1 C 0
s orcOrc1.KB316915               2918328 6 -  11690531 ATTTCT
i orcOrc1.KB316915             I 204 C 0
s equCab2.chr29                 10878557 6 +  33672925 ATTTCT
i equCab2.chr29                I 1 C 0
s cerSim1.JH767738               9911460 6 +  34209287 ATTTCT
i cerSim1.JH767738             I 1 C 0
s pteAle1.KB031146               3124157 6 -   3193751 ATGTCT
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                242570 6 -   2104649 ATTTCT
i myoLuc2.GL429990             I 1 C 0
s loxAfr3.scaffold_15           39458406 6 -  55688157 ATTTCT
i loxAfr3.scaffold_15          I 1 C 0
s triMan1.JH594766                 24381 6 +   6345240 ATTTCT
i triMan1.JH594766             I 1 C 0
s monDom5.chr8                 137896197 6 - 312544902 gattct
i monDom5.chr8                 C 0 I 1764
e sarHar1.chr5_GL861871_random     24005 3673 -    229675 I
e nomLeu3.chr18                 81384406 184 - 104879549 I

a score=151942.000000
s hg38.chr8_KI270814v1_alt        125639 15 +    141812 GGTGTATTTTAATTT
s panTro4.chr8                  55028124 15 + 143986469 GGTGTATTTTAATTT
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59168713 15 + 153482349 GGTGTATTTTAATTT
i ponAbe2.chr8                 C 0 C 0
s rheMac3.chr8                  61695844 15 + 150158102 GGTGTATTTTAATTT
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58369483 15 + 146850525 ggtgtattttaattt
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53290115 15 + 139301422 GGTGTATTTTAATTT
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33711675 15 + 155834243 aatgtatttttattt
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4068609 15 +   9144518 AGTGTATTTTGATGT
i saiBol1.JH378196             C 0 I 313
s otoGar3.GL873762               1567445 15 -   1847653 AGTGTATTTTGATTT
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1183889 15 -   7152218 AGTACATTTTGATGT
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                 12237 15 -     34802 AGTACATTTTGATGT
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2918334 15 -  11690531 AGTACATTTTGATGT
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10878563 15 +  33672925 AGTATATTTTGATAT
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9911466 15 +  34209287 AGTATATTTTGATGT
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3124163 15 -   3193751 AGTATAGTTTGATGT
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                242576 15 -   2104649 GGTATATTTTGATGT
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39458412 15 -  55688157 AGTATATTTTGATGT
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 24387 15 +   6345240 AGTATATTTTGATGT
i triMan1.JH594766             C 0 C 0
e sarHar1.chr5_GL861871_random     24005 3673 -    229675 I
e monDom5.chr8                 137896203 1764 - 312544902 I
e nomLeu3.chr18                 81384406 184 - 104879549 I

a score=266557.000000
s hg38.chr8_KI270814v1_alt        125654 39 +    141812 TTTAATTTGTAATCGGTATG------------------------------TGTAGAAGGAAGAAAGATA
s panTro4.chr8                  55028139 39 + 143986469 TTTAATTTGTAATCGGTATG------------------------------TGTAGAGGGAAGAAAGATA
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59168728 39 + 153482349 TTTAATTTGTAATCGGTATG------------------------------TGTAGAGGGAAGAAAGATA
i ponAbe2.chr8                 C 0 C 0
s rheMac3.chr8                  61695859 38 + 150158102 TTT-ATTTGTGATCGGTATG------------------------------TGTAGAGGGAAGAAAGATA
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58369498 38 + 146850525 ttt-atttGTGATCGGTATG------------------------------TGTAGAGGGAAGAAAGATA
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53290130 39 + 139301422 TTTAATTTGTGATCGGTATG------------------------------TGTAGAGGGAAGAAAGATA
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33711690 31 + 155834243 -ttcatttg-------tatG------------------------------GGTAGAAAGAATTCAGTTA
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4068937 39 +   9144518 TTTTATTTGTAATTGCTATG------------------------------GGAAGAGGGAGAAAATACA
i saiBol1.JH378196             I 313 C 0
s otoGar3.GL873762               1567460 35 -   1847653 -TTAA---AAAATTAGTATG------------------------------GATGCAGGGAAGAAAGATA
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1183904 39 -   7152218 TTTTATTTTTAATTGATAAT------------------------------GTTAGAAGGAAGAAAGATA
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                 12252 39 -     34802 TTTTATTTTTAATTGATAAT------------------------------GTTAGAAGGAAGAAAAATA
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2918349 39 -  11690531 TCTTATTTTTAATTGGTGAA------------------------------GGTAGAAGGAAGAAAGATA
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10878578 39 +  33672925 TTTTATTTTTAGTTGGTATG------------------------------GGTAGGAGGAAGAAAGATA
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9911481 39 +  34209287 TTTTATTTTTCATTGGTATG------------------------------AGTAGGAGGAAGAAAGATA
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3124178 39 -   3193751 TTTTATTTTTAATTGGTATT------------------------------AGTAGAAGAAATAAAGATA
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                242591 69 -   2104649 TTTTATTTTTAATTGGTATTTAATTACTTATCATCAAATATGTTCCCTGATATAAAATGGAGAATAATA
i myoLuc2.GL429990             C 0 I 277
s loxAfr3.scaffold_15           39458427 34 -  55688157 TTTTATTTTTAAT-----TG------------------------------AGCAGAGGAAAGAAAGATA
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 24402 39 +   6345240 TTTTATTTTTAATTGGTATG------------------------------AGCAGAGGGAAGGAAGATA
i triMan1.JH594766             C 0 C 0
e sarHar1.chr5_GL861871_random     24005 3673 -    229675 I
e monDom5.chr8                 137896203 1764 - 312544902 I
e nomLeu3.chr18                 81384406 184 - 104879549 I

a score=490637.000000
s hg38.chr8_KI270814v1_alt        125693 74 +    141812 TGTTTA---ATTAAATTAACTTTTTATTTAATGAAGATAAGCTGTAggtgagtgatag----aaa-ag----aggccttagattca
s panTro4.chr8                  55028178 74 + 143986469 TGTTTA---ATTAAATTAACTTTTTATTTAATGAAGATAAGCTGTAggtgagtgatag----aaa-ag----aggccttagattca
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59168767 74 + 153482349 TGTTTA---ATTAAATTAACTTTTTATTTAATGAAGATAAGCTGTAggtgagtgatag----aaa-ag----aggccttagattca
i ponAbe2.chr8                 C 0 C 0
s rheMac3.chr8                  61695897 78 + 150158102 TGTTTA---ATTAAATTAACTTTTTATTTAATGAAGATAAGCTGTAGGTGAgtgatgg----aaa-agagataggccttagattca
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58369536 78 + 146850525 TGTTTA---ATTAAATTAACTTTTTATTTAATGAAGATAAGCTGTAGGTGAGTGAtgg----aaa-agagataggccttagattca
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53290169 78 + 139301422 TGTTTA---ATTAAATTAACTTTTTATTTAATGAAGATAAGCTGTAGGTGAGTGAtgg----aaa-agagataggccttagattca
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33711721 81 + 155834243 TTTTTA---ACTAGATTAACATTTTAGTTAATGAACATAAGTCATAGGTGAGTGATAAAga-aaa-ggagataggcttttgattca
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4068976 82 +   9144518 GCTTTA---AATGAATAGCCTTTTCTTCTAAGGAAGACAAGCCATAGGTGGgtaataaagagaaa-agagctaggctttagattca
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1567495 78 -   1847653 TCCTAA---ATTGGAAAAACTTTTCCTTTAAAGGAGATAAGCCATGGgtggttgataa----aga-gaaaagaggctttagagtcc
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1183943 85 -   7152218 GCTTTAATTATTGAATAAACATTCCCTTTAAAGAAGACAAGTCTTTGGTGGgtaataaagaggaa-agagctgggctttagagtca
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                 12291 85 -     34802 GCTCTAATTATTGAATAAACATTCCCTTTAAAGAAGACAAGTCATTGGTGGgtgataaagaggaa-agagctgggctttagagtca
i camFer1.KB018161             C 0 I 249
s orcOrc1.KB316915               2918388 82 -  11690531 GCTTTA---ATTGGATAAACATTTCCTTCAATGAAGACAAGTCATAGATGGgtgataaggagaaa-agtgatgggctttagattca
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10878617 82 +  33672925 GCTTTA---ACTGAGTAAACTTTTCCTCTAATGAAGACAAGTCACAGGTGGgtgataaagagaaa-agagatgggcttgagattca
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9911520 82 +  34209287 GCTTTA---ATTGAATAAACTTTGTCTTTAATGAAGACAAGTCATAGGTGGgtgataaagagaaa-caagataggctttggattca
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3124217 83 -   3193751 GCTTTA---ACTGAATAAACTTTTTCTTTAATAAAGACAAGTgagaggtgagtgatcaagaaaaagagagatgggctttcagttca
i pteAle1.KB031146             C 0 C 0
s loxAfr3.scaffold_15           39458461 57 -  55688157 -----------------------ACCTTTAATGAAGACAAGTTGTAGgtgggtaatg-----aaa-agagatgggctttagattta
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 24441 57 +   6345240 -----------------------ACATTTAATGAAGACAAGTTGTAGgtgggtgatg-----aaa-agagatgtgctttagattca
i triMan1.JH594766             C 0 C 0
e myoLuc2.GL429990                242660 277 -   2104649 I
e sarHar1.chr5_GL861871_random     24005 3673 -    229675 I
e monDom5.chr8                 137896203 1764 - 312544902 I
e nomLeu3.chr18                 81384406 184 - 104879549 I

a score=549723.000000
s hg38.chr8_KI270814v1_alt        125767  98 +    141812 caaaagacaggttttaatttctagcttcttcatttgttagg--ggtg-------accttgcatacat--tacttag---taccaagtatgctttcctatatgaaaatgagga
s panTro4.chr8                  55028252  98 + 143986469 caaaagacaggttttaatttctagcttcttcatttgttagg--ggtg-------accttgcatacat--tacttag---taccaagtatgctttcctatatgaaaatgagga
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59168841  98 + 153482349 cacaagacaggttttaatttctagcttcttcacttgttagg--ggtg-------accttgcaaacat--tacttag---taccaagtatgctttcctatatgaaaatgagga
i ponAbe2.chr8                 C 0 C 0
s rheMac3.chr8                  61695975  98 + 150158102 cacaagactggttttaatttctagcttcttcacttgttagg--ggtg-------accttgcaaacat--tacttag---taccgaatatgttttcctgtatgaaaatgagaa
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58369614  98 + 146850525 cacaagactggttttaatttctagcttcttcacttgttagg--ggtg-------accttgcaaacat--tacttag---taccgaatatgttttcctgtatgaaaatgagaa
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53290247  98 + 139301422 cacaagactggttttaatttctagcttcttcacttgttagg--ggtg-------accttgcaaacat--tacttag---taccgaatatgttttcctgtatgaaaatgagaa
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33711802  98 + 155834243 caagagagtgggtgtaatttctaccttcctcacttggtagg--tgtg-------accttgtagacat--tacttaG---TACCAAGTATGATTTTCTATATGGAAAGGAGAA
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4069058  99 +   9144518 cacaagactggatttaactgccagctttctctcttgttaggtatgtg-------agctggga-acat--tacttat---caccaaatacgtttttctatatgaaagggagga
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1567573  97 -   1847653 cacaataataggtttaatttctagctttctcacttgctaggtgtgtg-------accttg---agac--tctttat---caccaaatatgttttctgatatgaaaaggtgga
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1184028  95 -   7152218 -----gacggggttgaattcccagctctcctgctggccagg--tgtg-----ttacctgggggacat--gacttat---caacacatatgtatcctgacacagaaaggaggg
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                 12625 103 -     34802 aaacagacgaggttgaattcccagctctcctgctggccagg--tgtg-----ttgcctgggggacat--gacttattaccaaccagtatgtttcctgacacgtaaaggaggg
i camFer1.KB018161             I 249 C 0
s orcOrc1.KB316915               2918470  98 -  11690531 -----gactgggtttaattcctagttttcctacttactagg--tgta-----tgaccttgggaacgt--tacttattatcagcaactatgtttcctgatatgaaaaggagga
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10878699 106 +  33672925 cctaagactgggtttaattcctagctttcctacttgctaga--tgtaagtagggaccttgggaactc--tattcatcatcaccaaatg--cttcctgatatgaaaaggagga
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9911602 108 +  34209287 cacaagactgggtttaattcctagctttcctacttgctaga--tgtaagtagggaccttgggaacgt--aactcatcatcaccaaatatctttccttatatgaaaaggagga
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3124300 102 -   3193751 cagaagactaggtgtgatgcctagctttcccacatgccagg--aata-----tgaccttgggaacacattacccatcgtcaccaaatatgtgtcttgatatgaa---tagga
i pteAle1.KB031146             C 0 C 0
s loxAfr3.scaffold_15           39458518  97 -  55688157 cagaagtctgg-cttaattcctagctttcgcatttgctagg--tgtg-----tgactttgga-------tatataaaatggccaactatgtttcctgatgtgaaaaccaaaa
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 24498 102 +   6345240 tacaagtctgg-cttaattcctggctttcccatttgctaga--tgtg-----tgaccttggaaacat--tacttaatatcaccaaatatgtttcctgttctgaaaaggaggt
i triMan1.JH594766             C 0 C 0
e myoLuc2.GL429990                242660 277 -   2104649 I
e sarHar1.chr5_GL861871_random     24005 3673 -    229675 I
e monDom5.chr8                 137896203 1764 - 312544902 I
e nomLeu3.chr18                 81384406 184 - 104879549 I

a score=16355.000000
s hg38.chr8_KI270814v1_alt        125865 3 +    141812 taa
s panTro4.chr8                  55028350 3 + 143986469 taa
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59168939 3 + 153482349 taa
i ponAbe2.chr8                 C 0 C 0
s rheMac3.chr8                  61696073 3 + 150158102 taa
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58369712 3 + 146850525 taa
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53290345 3 + 139301422 taa
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33711900 2 + 155834243 T-A
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4069157 3 +   9144518 taa
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1567670 3 -   1847653 taa
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1184123 3 -   7152218 tcg
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                 12728 3 -     34802 tcg
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2918568 3 -  11690531 tag
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10878805 3 +  33672925 taa
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9911710 3 +  34209287 taa
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3124402 3 -   3193751 taa
i pteAle1.KB031146             C 0 C 0
s loxAfr3.scaffold_15           39458615 3 -  55688157 aaa
i loxAfr3.scaffold_15          C 0 I 715
s triMan1.JH594766                 24600 3 +   6345240 taa
i triMan1.JH594766             C 0 C 0
s sarHar1.chr5_GL861871_random     27678 3 -    229675 TAG
i sarHar1.chr5_GL861871_random I 3673 C 0
e myoLuc2.GL429990                242660 277 -   2104649 I
e monDom5.chr8                 137896203 1764 - 312544902 I
e nomLeu3.chr18                 81384406 184 - 104879549 I

a score=98351.000000
s hg38.chr8_KI270814v1_alt        125868 13 +    141812 taatatttctttc
s panTro4.chr8                  55028353 13 + 143986469 taatatttctttc
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59168942 13 + 153482349 taatatttctttc
i ponAbe2.chr8                 C 0 C 0
s rheMac3.chr8                  61696076 13 + 150158102 taacatatccttc
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58369715 13 + 146850525 taacatatccttc
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53290348 13 + 139301422 taacatatccttc
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33711902 13 + 155834243 TACTATGTCCTTT
i calJac3.chr7                 C 0 I 243
s saiBol1.JH378196               4069160 13 +   9144518 taatatgtccttc
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1567673 13 -   1847653 caatattttcttc
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1184126 13 -   7152218 tagtacatccttc
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                 12731 13 -     34802 tagtacatccttc
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2918571 13 -  11690531 tagtatatccttc
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10878808 13 +  33672925 tagtctatctttc
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9911713 13 +  34209287 taatatatccttc
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3124405 13 -   3193751 gaacatatcctgc
i pteAle1.KB031146             C 0 C 0
s triMan1.JH594766                 24603 13 +   6345240 taatatatccttc
i triMan1.JH594766             C 0 C 0
s sarHar1.chr5_GL861871_random     27681 13 -    229675 TACTATCTTTTTG
i sarHar1.chr5_GL861871_random C 0 C 0
e myoLuc2.GL429990                242660 277 -   2104649 I
e monDom5.chr8                 137896203 1764 - 312544902 I
e nomLeu3.chr18                 81384406 184 - 104879549 I
e loxAfr3.scaffold_15           39458618 715 -  55688157 I

a score=95928.000000
s hg38.chr8_KI270814v1_alt        125881 15 +    141812 aggggtgattgtgtg
s panTro4.chr8                  55028366 15 + 143986469 aggggtgattgtgtg
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59168955 15 + 153482349 aggggtgattgtgtg
i ponAbe2.chr8                 C 0 C 0
s rheMac3.chr8                  61696089 15 + 150158102 aggggtgattgtgtg
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58369728 15 + 146850525 aggggtgattgtgtg
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53290361 15 + 139301422 agcggtgattgtgtg
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33712158 15 + 155834243 AAGAATGATTGTGTG
i calJac3.chr7                 I 243 C 0
s saiBol1.JH378196               4069173 15 +   9144518 aagggtgattgtgtg
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1567686 15 -   1847653 aagggtggttgtgtg
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1184139 15 -   7152218 aaggatggttgtgtc
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                 12744 15 -     34802 gagggtggctgtgcc
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2918584 15 -  11690531 aagggtggttgtgtg
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10878821 14 +  33672925 aagagtgattgtgt-
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9911726 14 +  34209287 aagggtggttgtgt-
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3124418 13 -   3193751 aagaatgg-tgtgt-
i pteAle1.KB031146             C 0 C 0
s triMan1.JH594766                 24616 15 +   6345240 aaaggTAATTGGGTG
i triMan1.JH594766             C 0 I 490
s sarHar1.chr5_GL861871_random     27694 15 -    229675 GTggttaattctttt
i sarHar1.chr5_GL861871_random C 0 C 0
e myoLuc2.GL429990                242660 277 -   2104649 I
e monDom5.chr8                 137896203 1764 - 312544902 I
e nomLeu3.chr18                 81384406 184 - 104879549 I
e loxAfr3.scaffold_15           39458618 715 -  55688157 I

a score=112855.000000
s hg38.chr8_KI270814v1_alt        125896 39 +    141812 -----gaaattagattatgtg----------tat--acagcatttaattcagttct
s panTro4.chr8                  55028381 39 + 143986469 -----gaaattagattatgtg----------tat--acagcatttaattcagttct
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59168970 39 + 153482349 -----gaaattagattatgtg----------tat--atagcatttaattccatgcc
i ponAbe2.chr8                 C 0 C 0
s rheMac3.chr8                  61696104 39 + 150158102 -----gaaattagattatgtg----------cat--acagcatttaattcagtgcc
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58369743 39 + 146850525 -----gaaattagattatgtg----------cat--acagcatttaattcagtgcc
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53290376 39 + 139301422 -----gaaattagattatgtg----------cat--acagcatttaattcagtgcc
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33712173 41 + 155834243 -----GAATTAACATAATAAA----------TATCAACAGCATTTGATTCAGTGTT
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4069188 51 +   9144518 -----gaagaaagattatatatatatgtatgtatttgtagcatttaattcagtgcc
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1567701 32 -   1847653 -----tttgtaagatta-------------------aaagcatttaatttggtgcc
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1184154 37 -   7152218 -----taagaaagaccata------------agt--agactattcaggttagtgcc
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                 12759 37 -     34802 -----taagaaagaccata------------tgt--aaactattcaggttagtgct
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2918599 37 -  11690531 -----gaagaaagattaca------------tat--atagtatttcatttagtgcc
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10878835 34 +  33672925 --------gtaagatgata------------tat--acagcatttaagttagtgcc
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9911740 34 +  34209287 --------gtgagattgta------------tat--acaacatgtaatttagtgcc
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3124431 30 -   3193751 --------gttagat----------------tat--ccagcatttaatttagtgcc
i pteAle1.KB031146             C 0 C 0
s sarHar1.chr5_GL861871_random     27709 42 -    229675 aaatttacatAAGTTTGTC------------CTT--AAACAAGAAAGTTCAATGCT
i sarHar1.chr5_GL861871_random C 0 C 0
e myoLuc2.GL429990                242660 277 -   2104649 I
e monDom5.chr8                 137896203 1764 - 312544902 I
e nomLeu3.chr18                 81384406 184 - 104879549 I
e triMan1.JH594766                 24631 490 +   6345240 I
e loxAfr3.scaffold_15           39458618 715 -  55688157 I

a score=134689.000000
s hg38.chr8_KI270814v1_alt        125935 22 +    141812 tcacacaTGCttatcagtatca-------
s panTro4.chr8                  55028420 22 + 143986469 tcacacaTGCTTATCAGTATCA-------
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59169009 22 + 153482349 tcacacaTGCTTATCAGTATCA-------
i ponAbe2.chr8                 C 0 C 0
s rheMac3.chr8                  61696143 22 + 150158102 tcacacaTGCTTATCAGTATCA-------
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58369782 22 + 146850525 tcacacaTGCTTATCAGTATCA-------
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53290415 22 + 139301422 tcacacaTGTTTATCAGTATCA-------
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33712214 22 + 155834243 TCATACATTCTTATCAGCATCA-------
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4069239 22 +   9144518 tagcacaTGTGTTTAGGCATCA-------
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1567733 22 -   1847653 tagcacaTGATTGTATGCAGCA-------
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1184191 22 -   7152218 ggacacaTGCTTCTCAGCGTGG-------
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                 12796 22 -     34802 gggcacGTGCTTCTCAGTGTGA-------
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2918636 22 -  11690531 tagcacaTGCTTATCAGCAACA-------
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10878869 22 +  33672925 tagcacaTGCTTACCAGCATCG-------
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9911774 22 +  34209287 tagcacaTGCTTATCAGCATCA-------
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3124461 22 -   3193751 tagcacatgcttatcaGCATCA-------
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                242937 22 -   2104649 TAGCACCTGCttatcaacatca-------
i myoLuc2.GL429990             I 277 C 0
s sarHar1.chr5_GL861871_random     27751 29 -    229675 GTATTCATGTTCAAAGACTTTCAGAAAGT
i sarHar1.chr5_GL861871_random C 0 n 0
e monDom5.chr8                 137896203 1764 - 312544902 I
e nomLeu3.chr18                 81384406 184 - 104879549 I
e triMan1.JH594766                 24631 490 +   6345240 I
e loxAfr3.scaffold_15           39458618 715 -  55688157 I

a score=58018.000000
s hg38.chr8_KI270814v1_alt        125957 7 +    141812 ttaactg
s panTro4.chr8                  55028442 7 + 143986469 TTAACTG
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59169031 7 + 153482349 TTAACTG
i ponAbe2.chr8                 C 0 C 0
s rheMac3.chr8                  61696165 7 + 150158102 TTAACTG
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58369804 7 + 146850525 TTAACTG
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53290437 7 + 139301422 TTAACTG
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33712236 7 + 155834243 TTAACTA
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4069261 7 +   9144518 TCAACTG
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1567755 7 -   1847653 TCTACTG
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1184213 7 -   7152218 TTAACTG
i vicPac2.KB632521             C 0 I 7
s camFer1.KB018161                 12818 7 -     34802 TTAACTA
i camFer1.KB018161             C 0 I 223
s orcOrc1.KB316915               2918658 7 -  11690531 TTAACTG
i orcOrc1.KB316915             C 0 I 7
s equCab2.chr29                 10878891 7 +  33672925 TTAACTG
i equCab2.chr29                C 0 I 7
s cerSim1.JH767738               9911796 7 +  34209287 TTTGCTG
i cerSim1.JH767738             C 0 I 7
s pteAle1.KB031146               3124483 7 -   3193751 TTAACTC
i pteAle1.KB031146             C 0 I 3
s myoLuc2.GL429990                242959 7 -   2104649 ttaattc
i myoLuc2.GL429990             C 0 I 7
s sarHar1.chr5_GL861647_random    324739 7 -   4230514 TTAGTGG
i sarHar1.chr5_GL861647_random I 3640 C 0
e monDom5.chr8                 137896203 1764 - 312544902 I
e nomLeu3.chr18                 81384406 184 - 104879549 I
e triMan1.JH594766                 24631 490 +   6345240 I
e loxAfr3.scaffold_15           39458618 715 -  55688157 I

a score=11701.000000
s hg38.chr8_KI270814v1_alt        125964 16 +    141812 aa-caacta--ctac---t---atc
s panTro4.chr8                  55028449 19 + 143986469 AA-CAACTA--CTACTAAT---ATC
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59169038 19 + 153482349 AA-CGACTA--CTACTAAT---ATC
i ponAbe2.chr8                 C 0 C 0
s rheMac3.chr8                  61696172 19 + 150158102 AA-CGACTA--TTACTAAT---ATA
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58369811 19 + 146850525 AA-CGACTA--TTACTAAT---ATA
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53290444 19 + 139301422 AA-TGACTA--TTACTAAT---AAA
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33712243 23 + 155834243 AACTTACCA--TTACTACTAAGATC
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4069268 20 +   9144518 AAACTACTG--TGATTACT---ATT
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1567762 17 -   1847653 AA---ATTA--CTAAGGGT---ATT
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1184227 16 -   7152218 ----GACTA--TTTTTGCT---GCC
i vicPac2.KB632521             I 7 C 0
s camFer1.KB018161                 13048 16 -     34802 ----GCCCA--TTTTTGCT---GCC
i camFer1.KB018161             I 223 C 0
s orcOrc1.KB316915               2918672 15 -  11690531 ----GACta--tttttatt----tc
i orcOrc1.KB316915             I 7 C 0
s equCab2.chr29                 10878905 16 +  33672925 ----GACTA--TTATTATT---ACC
i equCab2.chr29                I 7 C 0
s cerSim1.JH767738               9911810 16 +  34209287 ----GACTA--TTATTATT---ACC
i cerSim1.JH767738             I 7 C 0
s pteAle1.KB031146               3124493 16 -   3193751 ----GACta--ttattatt---ata
i pteAle1.KB031146             I 3 C 0
s myoLuc2.GL429990                242973 16 -   2104649 ----gacta--ttattgtt---ata
i myoLuc2.GL429990             I 7 C 0
s sarHar1.chr5_GL861647_random    324746 14 -   4230514 -----AATAAGTTactaag------
i sarHar1.chr5_GL861647_random C 0 C 0
e monDom5.chr8                 137896203 1764 - 312544902 I
e nomLeu3.chr18                 81384406 184 - 104879549 I
e triMan1.JH594766                 24631 490 +   6345240 I
e loxAfr3.scaffold_15           39458618 715 -  55688157 I

a score=233305.000000
s hg38.chr8_KI270814v1_alt        125980 37 +    141812 attattctttacattattattttcaGCCTG-CAGATTG-
s panTro4.chr8                  55028468 37 + 143986469 ATTATTCTTTACATTATTGTTTTCAGCCTG-CAGATTG-
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59169057 37 + 153482349 ATTATTATTTATATTATTGTTTTCAGCCTG-CAGATTG-
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81384590 34 - 104879549 ---ATTATTCCTAATATTGTTTTAAGCCTT-CAGATTG-
i nomLeu3.chr18                I 184 C 0
s rheMac3.chr8                  61696191 37 + 150158102 ATTATTCATCGTATTATTGTTTTCAGCCTG-CAGATTG-
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58369830 37 + 146850525 ATTATTCATCGTATTATTGTTTTCAGCCTG-CAGATTG-
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53290463 34 + 139301422 ATTATTCATCG---TATTGTTTTCAGCCTG-CAGATTG-
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33712266 34 + 155834243 ---ATTATTCTCACTATTGTTTTAAGCCTT-CAGATTG-
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4069288 34 +   9144518 ---ATTACCATTATTATCATTTCCTGCCTG-CAGACAG-
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1567779 37 -   1847653 ATTATTATTACTACTACTGTTTTAAGCCTT-CAGGTAG-
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1184243 37 -   7152218 ATTTTTATTCATATTACTGTTTTCAGCCTG-CAAACAG-
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                 13064 37 -     34802 ATTTTTATTCATATTACTGTTTTCAGCCTG-CAAACAG-
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2918687 37 -  11690531 attattattaatattattgttttaAGCCTG-CAAATAG-
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10878921 31 +  33672925 A------TTAGTATTATTGCTTTAAGCCTG-CAAATAG-
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9911826 37 +  34209287 ATTACTTTTAGTATTATTTCTTTAAGCCTG-TAAATAG-
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3124509 38 -   3193751 attattattaatattgttgttTTGAGCCTGTCAAATAG-
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                242989 38 -   2104649 attattattaacattgttgttTTAAGCCTGCCGAATAG-
i myoLuc2.GL429990             C 0 C 0
s sarHar1.chr5_GL861647_random    324760 25 -   4230514 ------------attatt-ttttaatcctt-ttcaaAGA
i sarHar1.chr5_GL861647_random C 0 C 0
e monDom5.chr8                 137896203 1764 - 312544902 I
e triMan1.JH594766                 24631 490 +   6345240 I
e loxAfr3.scaffold_15           39458618 715 -  55688157 I

a score=128852.000000
s hg38.chr8_KI270814v1_alt        126017 18 +    141812 -CTCTTATTT-ATCTTACTC
s panTro4.chr8                  55028505 18 + 143986469 -CTCTTATTT-ATCTGACTC
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59169094 18 + 153482349 -CTCTTGCTT-ATCTGACTC
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81384624 18 - 104879549 -CTCTCACTT-GTCCGACTT
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61696228 18 + 150158102 -CTCTTACTT-ATCTGACTT
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58369867 18 + 146850525 -CTCTTACTT-ATCTGACTT
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53290497 18 + 139301422 -CTCTTACTT-ATCTGACTT
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33712300 18 + 155834243 -CTCTCACTT-GTCTAACTT
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4069322 18 +   9144518 -CTCTTACTT-ATCTGACCC
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1567816 18 -   1847653 -TTCCTTCTT-ACCTGAGCC
i otoGar3.GL873762             C 0 C 0
s vicPac2.KB632521               1184280 18 -   7152218 -CTTCTCCTT-ACCTGATCT
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                 13101 18 -     34802 -CTTCTCCTT-ACCTGACCT
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2918724 19 -  11690531 -CTTCTCCTTAACCTGACCT
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10878952 18 +  33672925 -CTTTTACTT-ACCTGACCT
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9911863 18 +  34209287 -CTTTTACTT-ACCTGACCG
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3124547 18 -   3193751 -TTTTTACTC-ACCTGACTT
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                243027 17 -   2104649 --CTTTACTA-TCCTGACTT
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39459333 18 -  55688157 -CTTTGACTT-CTCTGGCCC
i loxAfr3.scaffold_15          I 715 C 0
s triMan1.JH594766                 25121 18 +   6345240 -CTTTCGCTT-ATCTGACCC
i triMan1.JH594766             I 490 C 0
s sarHar1.chr5_GL861647_random    324785  4 -   4230514 GCTC----------------
i sarHar1.chr5_GL861647_random C 0 C 0
e monDom5.chr8                 137896203 1764 - 312544902 I

a score=1289999.000000
s hg38.chr8_KI270814v1_alt        126035 171 +    141812 CTAACTGATTTTGAATTACAA-----TATATCAGACTAGAGAAGAAATGG--ATAATTCTTCACTTAAA-TCTTTGCCTCCTGTAGATGAGTGACCTGAGCACAGTCTTTTG---CCCATCAAAGGACTTTATGTTAAC-CACTTCTACTATGCCATACCCCAGT------G-----------------------------------------------------------------------------GGACATGAA-T-TTT-TTTT
s panTro4.chr8                  55028523 169 + 143986469 CTAACTGATTTTGAATTACAA-----TATATCAGACTAGAGAAGAAATGG--ATAATTCTTCACTTAAA-TCTTTGCCTCCTGTAGATGAGTGACCTGAGCATAGTCTTTTG---CCCATCAAAGGATTTTATGTTAAT-CACTTCTACTATGCCATACCCCAGT------G-----------------------------------------------------------------------------GGACATGAA----TT-TTTT
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59169112 171 + 153482349 CCAACTGATTTTGAATTACAG-----TATATCAGACTAGGGAAGAAATGT--ATAATTCTTCACTTAAA-TCTTTGCATCCTTTAGATGAGTGACCTGAGCATAGTCTTTTG---CCCATCAAAGGACTTTATGTTAAC-CACTTCTACTATGCCATACCCCAGC------G-----------------------------------------------------------------------------GGACATGAA-T-TTG-TTTT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81384642 173 - 104879549 CTAGCTAATTTTGAAGTACAAAATATTATATCAGACTAAGGAGGAAATAG--ATAATTCTTCACTTAAA-ACTTTGCCTCTTTTAGATTAGTGAACAGAACATAGTTTCTTG---CCCCTCAGTGGACCTTATGTTAGC-CAATTCTACTATGCCATACCCCAGT------G-----------------------------------------------------------------------------AGACATGAG-----T-CTTT
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61696246 169 + 150158102 CTAACTGATTTTGAATTACAA-----TATATCAGACTAGGGAAGAAGTGG--ATAATTCTTCCCTTAAA-TCTTTGCCTCCTTTAGATGAGTGACCTGAGCATAGTCTTTTG---CCCATCAAAGGACTTTGTGTTCAC-TACTTCTACTACGCCATACCCCAGT------G-----------------------------------------------------------------------------GGACATGAA----TT-TTTT
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58369885 169 + 146850525 CTAACTGATTTTGAATTACAA-----TATATCAGACTAGGGAAGAAGTGG--ATAATTCTTCCCTTAAA-TCTTTGCCTCCTTTAGATGAGTGACCTGAGCATAGTCTTTTG---CCCACCGAAGGACTTTGTGTTCAC-TACTTCTACTATGCCATACCCCAGT------G-----------------------------------------------------------------------------GGACATGAA----TT-TTTT
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53290515 169 + 139301422 CTAACTGATTTTGAATTACAA-----TATATCAGACTAGGGAAGAAGTGG--ATAATTCTTCCCTTAAA-TCTTTGCCTCCTTTAGATAAGTGACCTGAGCATAGTCTTTTG---CCCATCAAAAGACTTTATGTTCAC-TACTTCTACTACGCCATACCCCAGT------G-----------------------------------------------------------------------------GGACATGAA----TT-TTTT
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33712318 173 + 155834243 CTAGCTGATTCTGAAGTACAAAATATTATATCAGTCTAAGGAAGAAATAG--ATAATTCTTCACTCAAA-TCTGTGCCTCTTTTAGATTAGTGAACAGAGCATATTTTCTTG---CCCCTCAAAGGACTTTATGTTAGC-CACTTCTAGTATGCCATTTCCCAGT------G-----------------------------------------------------------------------------GGACATGAG-----T-CTTT
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4069340 147 +   9144518 CTAGCTGGTTTTGAATTACAA-----TATATCCGTCT---------------------------TTAAA-TCTTTGCTTGCATTAGATAAGTGACCTCAGCATAGTTTCTTG---CTCATCAAAGAACTTTAAGTTAGC-AACTTCTATAATATAATACCCTACT------G-----------------------------------------------------------------------------GGACAAGAGGC-TTC-CTTT
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1567834 251 -   1847653 CTAACAGA--AGGAATTACAAACTATTATATCTGACTAGGGAACTAATGA--ATAAATCTTCACTGAAA-TCTTTGCCTACCATAGTTAATTGACATCAGTATAGTTTCTTG---CCCGTCAGAGGACTTTAAGTTAGC-ACCTTCTACTGTGTAATAACCTAGT------Gcagtggttcttagccttcctaatgcctcctattgctgcgaccctttaatacagtttcctcatgttgtggtgacccccaaccataaa-a-tta-tttt
i otoGar3.GL873762             C 0 I 136
s vicPac2.KB632521               1184298 173 -   7152218 CTAGCTGATTTTAAAGCATTA-----TATTTCAGACTAGGGAAGAAATGG--GGAATCCTTTGTTTAAA-TCTTTACCTACTTCAGATAAGTGACCTCAGCATACTTTCCTG---TCCATCAGAGGACTTTAAATTAGC-AACATCTACTTCGTGCTACCCACGT------A-----------------------------------------------------------------------------GGACAGGAGGC-TTCTTTTT
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                 13119 172 -     34802 CTAGCTGATTTTAAAGTATAA-----TATTTCAGACTAGGGAAGAAACGG--GGAATCCTTTGTTTAAA-TCTTTACCTACTTGAGATAAGTGACCTCAGCATCCTTTCTTG---TCCATCAGAGGGCTTTAAATTAGC-AACTTCTACTTCGTGCTACCCAAGT------G-----------------------------------------------------------------------------GGACAGGAGGC-TTC-TTTT
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2918743 171 -  11690531 CTAGCTGATTTTGAAGTATAA-----TACAACAGACTAAGGAAGAAATGA--GGAATTCTTCCTTTATA-TACTCACCTGCTTCAGATAAGTGACCCCAGCATAGTTTCTTG---TCCATCA-AGGACTTTAAATTAGC-AATTTCTTCTACATGCCATCCGAGT------G-----------------------------------------------------------------------------GGACAGGAGGC-TTC-TTTT
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10878970 176 +  33672925 CTAGCTGACTTTGAGGTATAATATG-TATGTCACACTAAGGAAGAAATGG--GGAATTATTCATTTAAA-TCATCACCTGTTTCAGATAAGTGACCTCTGCATAGTTTCTTG---TCCATCAAAGGACTTTAAATTAGC-AGCTTCTATTACGTAATATCCAAGT------G-----------------------------------------------------------------------------GAATAAGAGGC-TTC-CTTT
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9911881 176 +  34209287 CTAGCTGACTTTGAAGTATAATATG-TATATCAGACTAAGGAAGATATGA--GGAATTCTTCATTTAAA-TCTTCACTTACTTCTGATAAATGACCTCTGCATAGTTTCTTG---TCCATCAAAGGACTTTAAATTAGC-AGCTTCTACTATGGAATAGCCAAGT------G-----------------------------------------------------------------------------GAACAAGAGGC-TTC-CTTT
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3124565 164 -   3193751 CTAGCTGACATTGAGGTACAA-----TATATGAGACTAAAGATGAAAAAG--GAATTTCTTCATCTAAA-TCTTC----ACTTCAGATAAGTGCCCTCAGCATAGTTTCTTG---TCTATTAGAGAA-CTTAAATTAGC-AATTT---CTGTATAAACCCTAAGT------G-----------------------------------------------------------------------------GGACAAGAGGC-TTC-CTTT
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                243044 172 -   2104649 CTAGCTCACTTTGAAATACAA-----TATATCAGACTAAGGATGAAACAG--GAAATTCTTCATTTAAA-TCTTCACCTACTTCAGATTAGTGACCTCCACATAGTTTCTTA---TCTGTTTGAGGATTTTAAATTAGC-AACTTCTACTATGCAGTACCCAAGT------A-----------------------------------------------------------------------------GGACAAGAGGC-TTC-CTTT
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39459351 179 -  55688157 CTAGCTGACTTTGAATTACAATGT--TACATCAGAGTAGGGAAGAAATAA--AGAATTCTTCATTAAAA-TCTTTACCTACTTCAGATAAGTGACCTCAGCAGAGTTTGTTG---TCCACCAAAGGATTTTAAATTAGC-AGCTTCTGCTGTATAATACACCAGTGAGTGGG-----------------------------------------------------------------------------AG--AGGAGGC-TTT-CTTT
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 25139 161 +   6345240 CTAGCTGTTTTTGAATTACAGTGT--TATATCAGAGTAGGGAAGAGA-------------TCATTAAAA-TCTTCACCTACTTCGGATAAGTGACCTCAGCATAGTTTCTTG---TCCACCGAAGGGTTTTAAATTAGC-AACTTTTACTGT-TAGTACACCAGT------G-----------------------------------------------------------------------------GG--AGGAGGC-TTC-CTTT
i triMan1.JH594766             C 0 C 0
s monDom5.chr8                 137897967 160 - 312544902 CTACTTTACTTTGAAGCCCGA-----CAAATAAGT----GGAAACTATGT--AGTGT-CCTAACTTAAACTCCTTAATTGTTGCACAGAATTGACTTTGACATATTCTCTTC-------TTATAAAGCCTTAATTGAAT-AATCCCTTCTA----AAGCCCCAAT------G-----------------------------------------------------------------------------GAAAGAGAAAACAAA-AAC-
i monDom5.chr8                 I 1764 C 0
s sarHar1.chr5_GL861647_random    324789 170 -   4230514 CCACTTTACTTTGAAGGTGAG-----TGAACAAGT----GGAAACTCTTTTAAGGGTCCCTAGCTGAAAGTCCTAAACTGTTTCACACAAATGGCTTTAACATACTCCCTTCTTGTCTATTATAAAACCTAAATTTTGTCAATCCTTGCTA----AAAATCCAAG------G-----------------------------------------------------------------------------GAACaaaaaaa-gtt-ctc-
i sarHar1.chr5_GL861647_random C 0 C 0

a score=1961860.000000
s hg38.chr8_KI270814v1_alt        126206 272 +    141812 -TTG-------TCCCTTCC----------------------------------------TTTAAGCCTTTGTGGTTATTTACAAAGATGAACACTTGAGCA---------CCCAGGATGCTT-ATGTTTGTTAGTT-CACGTAAATGTTTAAT--TCTACACTGACAGG-------CA--------------------CATATTAAG------------------TTTG--TAAA-------------------GTTTCTAAGAATGAAGTTCTCTCTCTGT----TTAGCACAGCCCTCATGCTTGCAGTATGTCATGGATCATCAGGGATA----GCATTCTTCTTCAGAAAAATATTGACATATTTACTCAAG-TATTTGTGGAATGACTGCAGAAGATTACGCT
s panTro4.chr8                  55028692 272 + 143986469 -TTG-------TCCCTTCC----------------------------------------TTTAAGCCTTTGTGGTTATTTACAAAGATGAACACTTGAGCA---------CCCAGGATGCTT-ATGTTTGTTAGTT-CATGTAAATGTTTAAT--TCTACACTGACAGG-------CA--------------------CATATTAAG------------------TTTG--TAAA-------------------GTTTCTAAGAATGAAGTTCTCTCTCTGT----TTAGCACAGCCCTGATGCTTGCAGTATGTCATGGATCATCAGGGATA----GCATTCTTCTTCAGAAAAATATTGACATATTTACTCAAG-TATTTGTGGAATGACTGCAGAAGATTACGCT
i panTro4.chr8                 C 0 C 0
s ponAbe2.chr8                  59169283 277 + 153482349 -TTG-------TCCCTTCC----------------------------------------TTTAAGCCTTTGTGGTTATTTACAAAGATGAACACTTGAGCA---------CCCAGGATGCTT-ATGTTTGTTAGTT-CATGTAAATGGTTAAT--TCTACACTGACAGG-------CA--------------------CATATTAAG------------------TTTG--TAAA-------------------GTTTCTAAGAATGATGTTCTCTCTCTGTTAGCTTAGCACAGCCTTCATGCTTGCAGTATGTAATGGATTATCAGGGATA----GCATTTTTCTTCAGAAAAATATTGACATATTTACTCAAGTTATGTGTGGAATGACTGCAGAAGACTATGCT
i ponAbe2.chr8                 C 0 C 0
s nomLeu3.chr18                 81384815 282 - 104879549 -TTG-------CCCCTTCC----------------------------------------TTTTAGCCTTGGTCGTGATTTACAAAGATAAAGACTTGAGCA---------CTCAAGATACTTAACATTTGTTAATA-CATGTAAATAGTTAAT--TCTACACTGACAGG-------CG--------------------CATATTAAA------------------TTGG--TTCT-------------------GTTCCTAATAATGAAGTTATCTCTTTGTTATTTTAGCACAGCTCTCATGCTTGCCATATGTCATGGATCATCAGAGATAGTTGGCATGGTTCTTCAGCAAAATGTTAACATCTGTGCTGAAGATACGTGTGGAATGACTGCAGAACGTTATGCT
i nomLeu3.chr18                C 0 C 0
s rheMac3.chr8                  61696415 267 + 150158102 -TTG-------TCCCTTCC----------------------------------------TTTAAGCCTTTGGGGTTATTTACAAAGATTGACACTTGAGCA---------CCCGGGATGCTT-ATGTTTGTTAGTT-CATGTAAGTGGTTAAT--TCTATACTGACAAG-------CA--------------------CATATTAAG------------------TTTG--TAAA-------------------GTTTCTAAGAATGAAGTTCTCTCTCTGTTAGTTTAGCACAGCCCTCATGCTTGCAGTATG-------TCATCGGAGATA----GCA---TTCTTCAGCAAAATATTGACATATTTACTCAAGATATGTGTGGAATGACTGCAGAAGATTATGCT
i rheMac3.chr8                 C 0 C 0
s macFas5.chr8                  58370054 267 + 146850525 -TTG-------TCCCTTCC----------------------------------------TTTAAGCCTTTGGGGTTATTTACAAAGATTGACACTTGAGCA---------CCCGGGATGCTT-ATGTTTGTTAGTT-CATGTAAGTGGTTAAT--TCTATACTGACAAG-------CA--------------------CATATTAAG------------------TTTG--TAAA-------------------GTTTCTAAGAATGAAGTTCTCTCTCTGTTAGTTTAGCACAGCCCTCATGCTTGCAGTATG-------TCATCGGAGATA----GCA---TTCTTCAGCAAAATATTGACATATTTACTCAAGATATGTGTGGAATGACTGCAGAAGATTATGCT
i macFas5.chr8                 C 0 C 0
s chlSab2.chr8                  53290684 268 + 139301422 -TTG-------TCCCTTCC---------------------------------------TTTTAAGCCTTTGGGGTTATTTACGAAGATTGACACTTGAGCA---------CCCAGGATGCTT-ATGTTTGTTAGTT-CATGTAAGTAGTTAAT--TCTATACTGACAAG-------CA--------------------CATATTAAG------------------TTTG--TAAA-------------------GTTTCTAAGAATGAAGTTCTCTCTCTGTTAATTTAGCACAGCCCTCATGCTTGCAGTATG-------TCATCGGAGATA----GCA---TTCTTTAGCAAAATATTGACATATTTACTCAAGATATGTGTGGAATGACTGCAGAAGATTATGCT
i chlSab2.chr8                 C 0 C 0
s calJac3.chr7                  33712491 280 + 155834243 -TTG-------CCCCTTCG----------------------------------------TTTTAGTCTTGGTGGTGATTTACAAGGATAAATACTTGAGCA---------CTCAAGCTCCTT-ACGTTTGTTTGTATTATGTAAATGGTTAAT--TCTACACTGACAGG-------CA--------------------AATATTAAA------------------ACAG--TTCT-------------------GTTCCTAATAATGAAGTTA--TCTCTGTTATTTTAGCACAGCCCTCATACTTGCAGTATATCATAGATCATCAGAGATAGTCGGCATGCTTCTTCAGCAAAATGTTGACATCTATGCTGAAGATATGCGTGGATTGACTGCAGAACGTTATGCT
i calJac3.chr7                 C 0 C 0
s saiBol1.JH378196               4069487 325 +   9144518 -TTGTCCCCCACCCCCTTT----------------------------------------TTTTAGCATTGGTGGTAATTTATGAAGATGAACACTTAGGCA---------CCCAAGATGTTC-ATGTTTGTTAGTA-CATGGAAATGTTTAAT--TCTACATGAACAGG-------CAAGATATTAAATTGGCAA-AGAATATCAAA------------------TTAG--CTTTTTAAATA-CCTTTCTTAAAGTTCCTAAGAAAAAAGTTATCTCTCTGGTATTTTCGAACAGCCCTCATTCTTGCTGTACATTGCACATCAGCAAGTATAGTCAGCCTTCTTCTTCAGCAAAATGCTGATGTGTTTTCTCAAGATCTGTCTGGATGGACTGCAGAAAATTATGTC
i saiBol1.JH378196             C 0 C 0
s otoGar3.GL873762               1568221 306 -   1847653 -TCG-------TCTCTTCC----------------------------------------TTTTAGCCTTGGTAGTAGTTTA----GATGAACACTTGAATA---------CCC--------T-ATGTCTATTAATA-TATGTAAGTGGTTAAA--TCTGCACTGACCAG-------CAAGACATGACATTGGTAA-AGTATATGAAATGCAGTGTTGAAGTAACTTTAC--TAAA-------------------GTTCCTCAGGGTAAAGTCATTTGTCTGTTATTTTAGAACAGCTTTGATGATTGCCTTACGTGAGAATTTGCCAGATATAGCTAGTTTTCTTCTTCAGCAACATGTCGATACCTCTCCTCAAGATATGGTTGGAAGGACTGCTAGAGATTATGCT
i otoGar3.GL873762             I 136 C 0
s vicPac2.KB632521               1184471 279 -   7152218 -TTG-------TCCCTTCT----------------------------------------TTTTGGCCTTGGAGGTAATTCACA----------CTTAAG--------------------------------------CATGTAAATGGTCAGT--TCTACAGGGATGGG-------CAGGATATTAACTTGGTAA-AATAGATCAAA------------------GTAG--CTGTTTCAGTA-AGTTAACT-AAGTTCCTAAGGGTGAGGTTATCTCTCTGTTATTTTCGATCAGCGCTCATGCTTGCTGTAAATTATGAATCACCAAATGTAGTCAGGCTTCTTCTTCAGAAAGGTATTAGTGTGTCTTCTCAGGATATCTATGAATGG-CTGCAGAAGAATATGCT
i vicPac2.KB632521             C 0 C 0
s camFer1.KB018161                 13291 279 -     34802 -TTG-------TCCCTTCT----------------------------------------TTTTGGTCTTGGAGGTAATTCACA----------CTTAAG--------------------------------------CATGTAAATGGTCAGT--TCTACAGGGATGGG-------CAGGATATTAACTTGGTAA-AATAGATCAAA------------------GTAA--CTGTTTCAGTA-AGTTAACT-AAGTTCCTAAAGGTGAGGTTATCTCTGTGTTATTTTTGATCAGCGCTCATGCTTGCTGTAAATTATGAATCACCAAATGTAGTCAGGCTTCCTCTTCAGAAAGGTATTAGTGTCTCTTCTCAGGATATCTATGAATGG-CTGCAGAAGAATATGCT
i camFer1.KB018161             C 0 C 0
s orcOrc1.KB316915               2918914 291 -  11690531 -TTG-------TCCCTTCA----------------------------------------TTTTAGCCTTGGAGGTAATTTACAAAGATGAACCCTTGAA--------------------------------------TATGTAAATGGTCAGT--TCTGCATGGATGGG-------CAAGATATTAACTTGGTAA-AGTATATCAAA------------------TTAG--CTGTTAAAGTA-AGTTAGCTAAAGTTCCTAAGGGTGAAGTTATCTCTCTGTTATTTTAGAACAGCTCTCATACTTGCTGTAAACTATGAATCAACAAATATAGTCAGGCTTCTTCTTCAGCAAGGTATTGATGTCTTTTCTCAAGATATCTATGGATGGACCGCAGAAGAATATGCT
i orcOrc1.KB316915             C 0 C 0
s equCab2.chr29                 10879146 289 +  33672925 -TTG-------TCTCTTCG----------------------------------------TTTTAGCCTTGTAGGTAATTTACAAAGATGAACACTTGAG--------------------------------------CATGTAAATGGTCAAT--TCTGCACAGACAGG-------CAAGATATTAACTTGGT---AGTCTATCAAA------------------TTAG--CTGCTTAAATA-ACTTAATTAAAATTCCTAAGGGTGAAGTTATCTCTCTGTTATTTTAGAACAGCCCTCATGCTTGCTGTAAATTATGAATCAACAAATATAGTCAGGCTTCTTCTTCAGCAAGGTATTGATGTCTTTTCTCAAGATATCTATGGATGGACTGCAGAAGAATATGCT
i equCab2.chr29                C 0 C 0
s cerSim1.JH767738               9912057 287 +  34209287 -TTG-------TCCCTTCA----------------------------------------TTTTAGCTTTGGAGGTAATTTATGAAGATGAATACTTGAG--------------------------------------CATGTAAATGGTCAAT--TCTACACAGACAGG-------CAAGATATTAACTTGATAA-AGTCTATCAAA------------------TTAG--CTGCTTAAATA-AC----TTAAAGTTCCTAAGGGTGAAGTTCTCTCTCTGTTATTTTAGAACAGCCCTCATGCTTGCTGTAAATTATGAATCAACAAATATAGTCAGGCTTCTTCttcagcaaggtattgatgtcttttctcaagatatctatggatggactgcagaagcatatgct
i cerSim1.JH767738             C 0 C 0
s pteAle1.KB031146               3124729 257 -   3193751 -TTG-------TCCCTTCT----------------------------------------TTTTAGCTTTGGAGGTAATTTATAAAGATGAACACTTAAA--------------------------------------CACATAACTGGGCAAT--TCTACACACACAAG-------CAAGACATGATCTTGGGAA-AATATATCAAA------------------TTAG--CTGTTTAAATA-ACTTAAT----GTCCCTAAGGGTGAAGTTATCTCTCTGTTATTTTAGAACAGCCCTCAGGCCTGGTGTAAATGATG------------------------------AACAAGGTGTTAATGTCTTTTCTCAGGATGACTTTGGATGGACTGCAGAAGAACATGCT
i pteAle1.KB031146             C 0 C 0
s myoLuc2.GL429990                243216 287 -   2104649 -TTG-------TCCTTTTA----------------------------------------TTTTAGCCTTGGAGGTAATTTACAAAGGTGAACACTTCAG--------------------------------------CAAGGAAATGATCAAT--TCTAGATAGACAA--------CAGGGTATTGACTTAGT-A-AGTATATCAAA------------------TTAG--CTGTTTAAATA-ACATAATTGAAGTTCCTGAGGGCAAAGTGATCTCTGTGTTATAT--ATACAATACGCATGCTTGCTGTAAATGATGAGCCAGAAAAAATAGTCAGGCTTCTCTTTCAGCAAGGTACTGATGTCTTTTCTCAGGATAACTGTGGGTGGCCTGCAGAGGAATATGCT
i myoLuc2.GL429990             C 0 C 0
s loxAfr3.scaffold_15           39459530 360 -  55688157 -TTG-------TCCCTTCCTTTaaaaaaaaaaaaaaaaaaaaattttttttttttttttttttAGCCTTGTA-GTAAATTATGAAGAT-AACACATAAGCATCCAAGGCACCCAAGATGCTT-ATGTCTCTTAGTA-CTTGTAAACAGTGAAT--TTTACACAGACAGG-------CAAGATATTAGCTAGGTAA-AATATATCACT------------------TTAG--CTGTGTAAGTA-ACTTAA-----GTTCCTAAGGATGAAGTTATCTCTCTGTTATTTTAGAACAGCTCTCATGCTTGCTGTAAATTATGACTCAACAAATATAGTCAGGCTTCTTCTTCAACAAGGTATTGATGTCTTCTCTGAAGATGTCTATGGATGGACTGCAGAAGAATATGCT
i loxAfr3.scaffold_15          C 0 C 0
s triMan1.JH594766                 25300 321 +   6345240 -TTG-------TCCCTTCC----------------------------------------TTTTAGCCTTGGAGGTAAATTAGAAAGAT-AACACACGAGCACCCGAGGCGCCCAAGATGCTT-ATGTCTCTTAGTA-CTTGTAAATCGCCAAT--TCTACATAGACAGG-------CAAGATATTAGCTTGATAA-AATATATCCGA------------------TTAG--CTGTGTAAATA-ACTGAA-----GTTCCTAAGGATGAAGTTAACTCTCTGTTATTTTAGAACAGCTCTCATGCTTGCTGTAAATCATGACTCAGCAAATGTAGTCAGGCTTCTGCTTCAGCAAGGTATTGATGTCTTTTCTCAAGATGTCTATGGATGGACGGCAGAAGAATATGCT
i triMan1.JH594766             C 0 C 0
s monDom5.chr8                 137898127 326 - 312544902 TCTT-------ATCTTTCT----------------------------------------TTCTGGACTTATTTTCCAATTTTAATGCTG--CAAATGAGCA---------ATAAAAACACTT-GTTTCCATCAATA-CCTGTTTATTCTCCAT-ATGCATATTAACCCCAAAGAAAAGGAGAAGTCCCTTTATTG--AAACATCAAT------------------AAAAGTCTGATTAAATGTGACTTATTTAAATTCTTAAATGCAAA-TTGTTTCTTTGTTATTCCAGAACAGCTCTCATGATTGCTGTCAGTACTGAACCAACAAGTATAGTCAATCTTCTTCTTCAATTTGATATTGATCTCTCTCTCCAAGATAATTATGGATGGACAGCAGAAGAATATGCT
i monDom5.chr8                 C 0 C 0
s sarHar1.chr5_GL861647_random    324959 321 -   4230514 tttt-------atctttct----------------------------------------ttctggtTTTA-TTGCCATTATTAATATTG--CACATGAGCA---------CTTAAAATACTC-CTATCCATTCCTA-TGTGTTCATACTCCACAATACTTATTAACACT-------AACAATATCCTCTTTTTTgtagaatatcaag------------------aaaaatctGCTTAAATgtgatttgtttaaatttttaaatatgaa-ttgtttctttgttaTTCTAGAACAGCCCTCATGATTGCTGTCAGTAGTGAACCAACTGGCATAGTCAGTCTTCTTCTTGGATATGATGTTGATCTCTCTTGTCAAGATATATACGGATGGACAGTTGAGCAGTATGCT
i sarHar1.chr5_GL861647_random C 0 N 0

a score=230531.000000
s hg38.chr8_KI270814v1_alt    126478  76 +    141812 GTTGTTAATATTTTTAATC--TATGTTTGTACA-----------------------------TGTAAAGTCT------------------------------------------------------------------AGGTGAGAT---TTCA--TAGCTTGGCTCAAGTAGTTTTT
s panTro4.chr8              55028964  76 + 143986469 GTTGTTAATATTTTTAATC--TATGTTTGTACA-----------------------------TGTAAAGTCT------------------------------------------------------------------AGGTGAGAT---TTCA--TAGCTTGGCTCAAGTAGTTTTT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8              59169560  76 + 153482349 GTTGCTAATATTTTTAATC--TAAGTCTGTACA-----------------------------TGTAAAGGCT------------------------------------------------------------------AGGTGAGAT---TTCA--TAGCTTGGCTCAAGTATTTTTT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18             81385097  78 - 104879549 GTTGCTTGTGGATTTAATCTGTAAGTGTTTACA-----------------------------TTTAAAGGCT------------------------------------------------------------------AGGTGAGAT---TTTA--TAGTTTGTTTCAGGTAGTTTTT
i nomLeu3.chr18            C 0 C 0
s rheMac3.chr8              61696682  76 + 150158102 GTTGCTAATATTTTTAATC--TAAGTGTTTACA-----------------------------TGTAAAGGCT------------------------------------------------------------------AGGTGAGAT---TTCA--TAGCTTGGTTCAATTAGTTTTT
i rheMac3.chr8             C 0 C 0
s macFas5.chr8              58370321  76 + 146850525 GTTGCTAATATTTTTAATC--TAAGTGTTTACA-----------------------------TGTAAAGGCT------------------------------------------------------------------AGGTGAGAT---TTCA--TAGCTTGGTTCAATTAGTTTTT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8              53290952  76 + 139301422 GTTGCTAGTATTTTTAATC--TAAGTGTTTACA-----------------------------TGTAAAGGCT------------------------------------------------------------------AGGTGAGAT---TTCA--TAGCTTGGTTCAATTAGTTTTT
i chlSab2.chr8             C 0 C 0
s calJac3.chr7              33712771  78 + 155834243 GCTGCTTATGGATTTGATGAGTAAGTGTTTACA-----------------------------TTTAAAGGCT------------------------------------------------------------------ATGTGAGCA---TTCA--TAGTTTGTTTCAGGTAATTTTT
i calJac3.chr7             C 0 C 0
s saiBol1.JH378196           4069812 131 +   9144518 ATTTCTAGTCCTTTTACTAGGCAAGTTTTTACA-----------------------------TTAGAAGGCTAGCTTACACTAAATTGCAGCTTAAAAT----AATTAT--AG--CTA----TTGTATCTTATATATCAGGTGAGGT---TTTA--TAGTTGAATTCAGGTCATCTT-
i saiBol1.JH378196         C 0 C 0
s otoGar3.GL873762           1568527 132 -   1847653 ATTCGCAGTGGTTTGCAAGCGTAAGTGTTTACATTAAGAAACAAGTTAATATCATGTTGAAGTTTAAAGTAA---------------------------------TTAT--AA--TTA----TTGTATCTTAGACATCAGGTGAGAT---TTCA--TAGCTAGGTTCAGGTAGCTTTG
i otoGar3.GL873762         C 0 C 0
s vicPac2.KB632521           1184750 121 -   7152218 CTTATTAGTAGTTTTAATATGT-AATGTTTATA-----------------------------CTAA-----TTATTATTTCTAAACTGAGATTGAA-------AATGAC------CTG----TTACTTGATACGTGACAGGTGAGAG---TTCC--TAGTTGGGAGCAGGCACTTTGG
i vicPac2.KB632521         C 0 C 0
s camFer1.KB018161             13570 122 -     34802 CTTATTAGTAGTTTTAATATGTAAATGTTTATA-----------------------------CTAA-----TTATTATTTCTAAACTGAGGTTGAA-------GATGAC------CTG----TTACTTGATACGTGACAGGTGAGAG---TTCC--TAGTTGGGTGCAGGCACTTTGG
i camFer1.KB018161         C 0 C 0
s orcOrc1.KB316915           2919205 130 -  11690531 CTTATTAGTGGTTTTAATATGTAAGTGTTTACA-----------------------------TTAAAATGCCAGTTATCACTAAACTGTGGTTAAA-------AATAATTTAA--CTG----TTACTTGTTATGTGACAGGTGAGAG---TT-C--TCGTTTGGTGCAAGCAGCTTGG
i orcOrc1.KB316915         C 0 C 0
s equCab2.chr29             10879435 130 +  33672925 CTTGTTAGTGGTTTTGCTATGTAAGTGTTTACA-----------------------------TTCAAATGCTAGTTATCACTAAACTGGGGT-TAA-------AATAATTTAA--CTG----TTACTTCTTATGTAGCAGGTATGAT---TTCA--TAGTTTGGTTCAGGCATTGTTG
i equCab2.chr29            C 0 C 0
s cerSim1.JH767738           9912344 130 +  34209287 gTTGTTAGTGGTTTTACTATGTAAGTGTTTACA-----------------------------TTCAAATGCTAGTTATCACTAAACTGAGGT-TAA-------AATAATTAAA--CTA----TTACTTCTTATGTGTCAGGTGATAT---TTCA--TAGTTTGGTTCAGGCAATTTTG
i cerSim1.JH767738         C 0 C 0
s pteAle1.KB031146           3124986 130 -   3193751 TTTATTAAAGGTTTTAATTTGTATGTTTTT-CA-----------------------------TTAAAATGCTAGTTATCTCAAAACTGAGGTTTAA-------AATAATTTAA--TTT----TTACTTCTTATGTAAAAGGTGAGAT---GTCA--TAGTGTGGTTCAGGCACTTTGG
i pteAle1.KB031146         C 0 C 0
s myoLuc2.GL429990            243503 130 -   2104649 TTTGTT-GTGGTTTTAATTTGTAAATGTTTAAA-----------------------------TTAAAATGCTAGTAATCACTAAAC-------TGAGGTTTAAAATAAGTTCA--CTG----TTACTTTTTACATAACAGGTGAGAT---TTCA--TAGTTTGGTTCAGGCAGTTTGG
i myoLuc2.GL429990         C 0 C 0
s loxAfr3.scaffold_15       39459890 132 -  55688157 CTTATTAGTGGTTTTAATATGTGAGTGTTTACA-----------------------------ATAAAATGGTAGTTATTACTAAACAGTG---------------AGATTTAAAATTATAACTTATTTCTTATACAACAAATGCTGTAGATTCA--TAATTTGGTTCAGATAGTTTTA
i loxAfr3.scaffold_15      C 0 C 0
s triMan1.JH594766             25621 133 +   6345240 TTTGTTAGTGGTTTTAATATGTAAGTGTTTACA-----------------------------ATAAAATGGTAAATA-AATAAAACAGTGAGGT---------TTAAAGTTATAACTA----TTACTTCTTACACAACAGATGATGTAGAGTCA--TAATTTGGTTCAGCTAGTCTTG
i triMan1.JH594766         C 0 C 0
s monDom5.chr8             137898453  71 - 312544902 CTTGTCAGTGGTTTTCCTGTGTAAGTGCTAACA-----------------------------T---AATCCT------------------------------------------------------------------------AAT---TCCATTTACTTAATTGCATTTATTTTTT
i monDom5.chr8             C 0 N 0

a score=156869.000000
s hg38.chr8_KI270814v1_alt   126554 23 +    141812 GAAGGGCAGTGAGTTAATTCACT--------------
s panTro4.chr8             55029040 23 + 143986469 GAAGGGCAGTGAGTTAATTCACT--------------
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59169636 23 + 153482349 GAAGGGCAGTGAGTTAATTCACT--------------
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81385175 23 - 104879549 GGATGACAGTGAGTTAGTTCACT--------------
i nomLeu3.chr18            C 0 C 0
s rheMac3.chr8             61696758 23 + 150158102 GAAGGGCAGTGAGTTAATTCATT--------------
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58370397 23 + 146850525 GAAGGGCAGTGAGTTAATTCATT--------------
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53291028 23 + 139301422 GAAGGGCAGTGAGTTAATTCATT--------------
i chlSab2.chr8             C 0 C 0
s calJac3.chr7             33712849 23 + 155834243 GAAAGACAGTGAGTTAGTTCACT--------------
i calJac3.chr7             C 0 C 0
s saiBol1.JH378196          4069943 16 +   9144518 -----GCGGTGG--CAGTCCACT--------------
i saiBol1.JH378196         C 0 C 0
s otoGar3.GL873762          1568659 23 -   1847653 GAATGGCAATGAGTTAATATACT--------------
i otoGar3.GL873762         C 0 C 0
s vicPac2.KB632521          1184871 23 -   7152218 GGATGGCAGTGAGATATTCCACC--------------
i vicPac2.KB632521         C 0 C 0
s camFer1.KB018161            13692 23 -     34802 GGATGGCAGTAAGACTCTCCACA--------------
i camFer1.KB018161         C 0 C 0
s orcOrc1.KB316915          2919335 23 -  11690531 GAATGGTGGTGAGATGTTCCCCA--------------
i orcOrc1.KB316915         C 0 C 0
s equCab2.chr29            10879565 23 +  33672925 GAATGGCAGTGAATTAGTCCACG--------------
i equCab2.chr29            C 0 C 0
s cerSim1.JH767738          9912474 23 +  34209287 GAATGGCAGTGAGTTAGTCCACA--------------
i cerSim1.JH767738         C 0 C 0
s pteAle1.KB031146          3125116 18 -   3193751 GAATGGCAGTGAGTTAAT-------------------
i pteAle1.KB031146         C 0 I 5
s myoLuc2.GL429990           243633 23 -   2104649 GAATGGCAGTGAGTTAGTCTATG--------------
i myoLuc2.GL429990         C 0 I 225
s loxAfr3.scaffold_15      39460022 37 -  55688157 GAATGGCCATGAGTTATTCTCTATGAGTTATTCTACA
i loxAfr3.scaffold_15      C 0 C 0
s triMan1.JH594766            25754 37 +   6345240 GAATGGCAATGAATTATTCCCTATGAGTTATTCCTCA
i triMan1.JH594766         C 0 C 0

a score=2534611.000000
s hg38.chr8_KI270814v1_alt   126577 368 +    141812 TCATCAGCCAGAAATCAGGCAAAAAG-----------------CTAAACTAGTTAGAAGGAGCAGCGGGTCCAGGATTCTTTA--------------TTTTAGGGCTTTTAACACATT-TATCCCTACAGATACCAATGTTG-TCTATTTGATCCCAAGTATAATCCCAATgcatgggataaacatagtgtcacattttcaatttttgtaattagtaattt-gggtcttaaaacgtccacttt-agc-aaaaaa-tttagta-ctg-cctctgggcgctatcctctataccc-tcctccttga-atttttaaaggaacttaagg------ggttccctaagtccaag-----------gaagacagtcttcttttac-agtcaggatgagg-ggggagaaaag-acccttctaatcattgtgttgttcc
s panTro4.chr8             55029063 370 + 143986469 TCATCAGCCAGAAATCAGGCAAAAAG-----------------CTAGACTAGTTAGAAGGAGCAGCGGGTCCAGGATTCTTTA--------------TTTTAGGGCTTTTAACACATT-TATCCCTACAGATACCAATGTTG-TCTATTTGATCCCAAGTATAATCCCAATgcatgggataaacatagtgtcacatttttaatttttgtaattagtaattt-gggtcttaaaacgtccacttt-agcaaaaaaa-tttagta-ctg-cctctgggcgctatcctctatacccttcctccttga-atttttaaaggaacttaagg------ggttccctaagtccaag-----------gaagacagccttcttttac-agtcaggatgagg-ggggagaaaag-acccttctaatcattgtgttgctcc
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59169659 369 + 153482349 TCATCAGCCAGAAATCAGGCAAAAAG-----------------CTAGACTAGTTAGAAGGAGCACTGGGTCCAGGATTCCTTA--------------TTTTAGGGCTTTTAACACATT-TATCCCTACAGATACCAGTGTTG-TCTATTTGATCCCAAGTATAACCCCAATGCATGGGATAAACATAGTGTCACATTTTTTATTTTTCTAGTTGGTAATTT-GGGTCTTAAAATGTCCACTTT-AGC-GAAAAA-TTTAGCA-CTG-CCTGTAGGTGCTATCCTCTATACCC-TCCTCCTTGATTTTTTTAAAGGAACTTAAGG------GATTCCCTAAGTCCAAG-----------GAAGACAGCCTTCTTTTAC-AGTCAGGATGAGG-GGTGGGAAAAG-GCCCTTCTAATCATTGTGTTGTTCC
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81385198 351 - 104879549 TCATCGGCCAGAAACTAGGCAAAAAG-----------------CTAAACTAGTTAGAAGGAGTAATGGCTCCAGGATTCTTTA--------------TTTTAGGGCTT-----------------TAGGGACGCTAATGTTG-TCTACTTGATTTGAAgtataacccctatgcattggataaacataatgtcacagttttggtttttctaattagttattt-gggtcttgaaatgtccactttaagc-agaaaa-cctgata-gtgtcccctgggggctgtcttccatacct-tcattcttgaattttttaaaagaatctgaa------------cctaagtccaag-----------aaagacattccttttgtacaagtcagaaggact-ggggaggaaatcgccattctcttcattttgttgtttc
i nomLeu3.chr18            C 0 C 0
s rheMac3.chr8             61696781 369 + 150158102 TCATCAGCCAGAAATCAGGCAAAAAG-----------------CTAGACTAGTTAGAAGGAGCAGTGGGTCCAGGGTTCTTTA--------------TTTTAGGGCTTTTAACACAGT-TATCCCTACAGATATCAAAGTTG-TCTATTTGATTCCAAGTATAACCCCAATgcatgggataaacacagtgtcacattttttatttttctagtcagtaattt-gggtcttaaaatgtccacttt-agc-aaaaaa-cttagta-ctg-cctctgggtgctatcctctatacct-tcctccttgatttttttaaaagaacttaagg------ggttccctaagtcccag-----------gaagacagtcttcttttac-agtcaggatgagg-gatgggaaaag-gtccttctaatcattgtgttgtttc
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58370420 369 + 146850525 TCATCAGCCAGAAATCAGGCAAAAAG-----------------CTAGACTAGTTAGAAGGAGCAGTGGGTCCAGGGTTCTTTA--------------TTTTAGGGCTTTTAACACAGT-TATCCCTACAGATATCAAAGTTG-TCTATTTGATTCCAAGTATAACCCCAATgcatgggataaacacagtgtcacattttttatttttctagtcagtaattt-gggtcttaaaatgtccacttt-agc-aaaaaa-tttagta-ctg-cctctgggtgctatcctctatacct-tcctccttgatttttttaaaagaacttaagg------ggttccctaagtcccag-----------gaagacagtcttcttttac-agtcaggatgagg-gatgggaaaag-gtccttctaatcattgtgttgtttc
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53291051 369 + 139301422 TCATCAGCCAGAAATCAGGCAAAAAG-----------------CTAGACTAGTGAGAAGGAGCAGTGGGTCCAGGGTTCTTTA--------------TTTTAGGGCTTTTAACACAGT-TATCCCTACAGATATCAATGTTG-TCTATTTGATTCCAAGTATAACCCCAATgcatgggataaacacagtgtcacattttttatttttctagtcagtaattt-gagtcttaaaatgtccacttt-aac-aaaaaa-tttagta-ctg-cctctgggcgctatcctctatacct-tcctccttgatttttttaaaagaacttaagg------ggttccctaagtcccag-----------gaagacagtcttcttttac-agtcaggatgagg-gatgggaaaag-gtccttctaatcattgtgttgtttc
i chlSab2.chr8             C 0 C 0
s calJac3.chr7             33712872 370 + 155834243 TCATCAGCCAGAAAGTGGACAAAAAG-----------------CTAGGCTAGTTAAAAGGAGGAATGGGTCCAGGATTCTTTC--------------TTTTAGGATTTTCCACAGCTT-TATCCCTAGGGATCCTAATGCTG-GCTGCCTGATTTGAAGTAAACCCTT-ATGCGGGGGATAAACATAGTGTCACAATTTTGATTTTTCTAATTAGTTATTT-GGGTCTTGAAATGTCCAGTTT-AGC-AGAACA-CATGATA-GTGCCCCCTGGGGGCTGTCTTTCATAcct-tcacccctgaattttttaaaagaatttaagg------ggtttcctaagtccaat-----------gaagacattccttttgtacatgtcagaagaact-tgggggaaatg-gccattctcttcattttgttgtttc
i calJac3.chr7             C 0 C 0
s saiBol1.JH378196          4069959 353 +   9144518 TTATCAGCCAGAAATCAGGCAAAACGCTA--------------CTAGACTGGTTAGAAGTATCAGTGGGTGCAGAATTCTTCA--------------TCTCAGGACTCTTGAGATCTT-TGT-CGTAGAGATCCAATCATTG-CTCCATTTACTCCAAGTATAGCCAC-ATGCACAGGATAAAAATAG-----------------------TTAGTCATTT-GGGTCTTGAAATGT-TGCCTT-AGT-AGAAAA-TCTTGTA-CTATCTTCTGAGGGCTGTCTCTTATAccc-tcctccttgaatttttc--aagaacctaagg------gctttcctaagtacaagaagaagataaaaaagacaatcctt---taccagtgagaaggaag-ggaagaaaaca-a-cattgtaaccgttctgttctttc
i saiBol1.JH378196         C 0 C 0
s otoGar3.GL873762          1568682 322 -   1847653 TCATCAACCAGAAATTAAGCAAAAGG-----------------CTAAACTGGTTATAAGTAGCAA-GGGTACAGGATCC-------------------------------------------------------CACCATTC-CCCATCTCACTCCAAGTATAAGCCCTCTgcataggataaaaataatgtcgta-ttttgatttttcaaattagttagtt-gggt-ttgaaatgtccaggtt-agc-agaaaagctttgta-ctctcccctgatagctatcc----------tcctcctcgaagttttc--aaggacctaaggggtgaaggtgttctaagtccagg-----------ggggataatctgcttttgcaagacagaaagaga-gagcataaaga---tgttctaagcattccattgtttc
i otoGar3.GL873762         C 0 C 0
s vicPac2.KB632521          1184894 361 -   7152218 TCATCAGCTGGAAACCAG-CAAAAGG-----------------CCAGACTAGTGAGATGGGGCAGTGGGCACAGGGTTCTTTA--------------GCTCAGGCTTTGTAAGACCTT-TATCCTTAGGGATCCTACTGTTC-TCCATTTAATTCC-AGTGTAACCCCTGTgcatggggtacaagtaacgtcacatctctgatttttctaactagttaatt-agatcttgaaatgtttagttg-agc-agaaaa-tcctgta-ttttcccttggggactttcttcta-actc-tccatcttgaattttcc--aagaacctaagg------gattccctaagatcaa------------aatgacaatcctcttccgcaagtcattggggca-g-gg---ggaa-gccattctaattgttgtgttgctgc
i vicPac2.KB632521         C 0 I 109
s camFer1.KB018161            13715 362 -     34802 TCATCAGCTGGAAACCAG-CAAAAGG-----------------CCAGACTAGTGAGATGGAGCAGTGGGCACAGGGTTCTTTA--------------TCTCAGGCTTTGTAAGACCTT-TATCCTTAGGGATCCTACTGTTC-TCCATTTCATTCC-AGTGTAACCCCTGTgcatggggtacaagtaacgtcacatctctgatttttctaactagttattt-ggatcttgaaatgtttagttg-agc-agaaaa-tcctgtatttttcccttggggactttcttcta-actc-tccatcttgaattttcc--aagaacctaagg------gattccctaagatcaa------------agtgacaatcctcttccgcaagtcattggggcg-g-gg---ggag-gccattctaatcattgtgttgctgc
i camFer1.KB018161         C 0 I 117
s orcOrc1.KB316915          2919358 367 -  11690531 TCATCAGCTGGAAACCAGCCGAAAGG-----------------CCAGACTAGTTAGATGTAGCAGTGGGCACAGGGTTCTTTA--------------TCTCAGGACTT-TAAGACTTTATATCCTTAAAGATCCTCACATTA-TCCATTTCATTCCAAGTGTAACCCCTATGCATggggtacaagtagtgtcacagctctgatttttctaacttggtgttt-gggtcttgaagtgtttagttc-agc-agacta-tcctata-ttttctcttggggacttacatctatactc-tccctcttaaattttgc--aagaagttaagg------gattccctaagatcaa------------agagacagtcctcttccacaagtcatttggagg-g-ggaaaaaag-ggcattctcatcattctgttgattg
i orcOrc1.KB316915         C 0 C 0
s equCab2.chr29            10879588 366 +  33672925 TTATCAGCCAGAAACCAAGCAAAAGG-----------------CTAGACTAGTTAGAAGTAGCAATGGGCGCAGGATTCTTTAT------------CTCTCAGGACTTTGAAGACCTC-AATCCTTAGGGATCCTAATGTTAATTCATTTCATTCCAAGTATAACCCCTATGCATGAAGTAC-AATTGTGTCACGTCTGTGATTTTTCTAACTTGTTATTT-GGGTCATAAAATATTCAGTTT-Tgt-agaaaa-tcctgta-cttcttcccaggggctatctcctatactc-t--tccttgtattttcc--aggaacctaaag------ggttccttaagtctgag-----------aaggacaatcctctgtcataagtcagatggag----ggaaaagag-gacattctaatcattctcctgtttc
i equCab2.chr29            C 0 C 0
s cerSim1.JH767738          9912497 365 +  34209287 TCATCAGCCAGAAACCAAGCAAAAGG-----------------CTACACTAGTTAGAAGTAGCAATGGGTGCAGGATTCTTTA--------------TCTCAGGACTTTTAAGACCTT-TATCCTTAGGGATCCTAATGTTAACTCGTTTCATTCCAggtataacccctatgcatggggtac-aatcatgtcacatctatgatttttctaatttgttattt-gggtcttgaaatgttcacttt-agc-agaaaa-tcctgta-ctt-tttctgggaactatctcctatactc-tcctccttgaattttct--gagaacctaagg------ggttccctaagtccaag-----------ggagacaatcctcttgcataagtcagatggag----ggaaaaaag-gacattctaatcattctgttgtttc
i cerSim1.JH767738         C 0 C 0
s pteAle1.KB031146          3125139 357 -   3193751 TCCTCAGACAGAGACCAAACTAAAGG-----------------CTGGACAAATTAGAGGTAGCAGTGGGTG-AAGATTCATTA--------------TCTCAGAACTTTTAAGACCTT-T-TCTTTAAGGATCGTAATGTTA------TCCATTTCAAgtataacccctctgcataggatccaaataatatcccatctctggtttttccatgtagttattttggg--ttaaaatgttcacttt-agc-agaaac-ttttgta-t---tttctggaagctgtcatctgtactc-tcccccttgaatttttc--aagaacctaagg------ggttccctaaatccaaa-----------ggagacaatcctctctcacatgtcagatggaga-t-ataaagaag-gatatgctaatcattctgttgtgtc
i pteAle1.KB031146         I 5 C 0
s myoLuc2.GL429990           243881 351 -   2104649 TCATCAGCCAGAAACCTAGCAAAAGG-----------------TTCGCCTAGTTAGAAATAGCAATGGGC--CAGATTCTTTA--------------TCTCAGAACTTGTAAGACCTT-TATCTTTAGGCTTCCTAACATTA-TTTATTTCATTCCATGTAGAACTCTTATGCTTGGAGTACAAATAA----------CTGATTTTTCTAACTAGTTATTTGGGGTCTTAAAGTATTCACTtt-agc-agaaaa-atctgta-t---tttctgggggccatctcctata-tt-tcccctgtgaatttttt--aagaacctaaag------gattacctaagtccaag-----------ggagacagtcttctttcacaagtcagatggag----gtaaaaaag-cagagtctaatctttctgttgtttc
i myoLuc2.GL429990         I 225 C 0
s loxAfr3.scaffold_15      39460059 393 -  55688157 TCATCAGCCAGAAACCAAGCAAAAGGCAAAGTCCACTGTAAGGCTAGATTACTCAGAAGTAGCAATTAATGCAGGGTTCTTAACGGGAAGAAGTGGGTGTTAAGACTTTTGAGACCTT-TAACCTTAGGAATGCTAAC---A-TCAGTTTCATTCGAAGTATTACCTGTATGCATGTggtacaaa-agggtcatatatttgatttttctaatgaattgttt-gattcttgaactgt---actt-agg-agaaaa-tcctgta-ttt-tccctggggactatctcctgcaccc-tcccaattgaattttcc--aagaacctcagg------ggcttgttaagtctaaa-----------ggggacaatccttttctacaagtcagatgggggtgatgaggggaa-ggtattttaatcattttgttgtttt
i loxAfr3.scaffold_15      C 0 C 0
s triMan1.JH594766            25791 393 +   6345240 TCATCAGCCAGAAACCAAGCAAAAAGCAAAGTCCAGTGTAAGGCTAGGATAGTTAGAAGTAGCAGTTGATGTGAGGTTCTCAATGAGAAGAAGTCGGGGTAAAGACTTTTGAGACCTT-TAACCTTAGGAATCCTAACATTA-TCGATTGCATTCCAggtataacccctgtgcatgtggtacaaa-aggatcacatctttgatttttctcatgaattattt-gattattgaagtgtctgcttt-tgc-agaaga-tcctgta-ttt-cccctggggactatcttctgcaccc-tccccattgaattttcc--aagaacttcagg------ggtttgctaagtccaaa-----------gcagacaatcccttttcacgagtcagatggagttggtgacgggac-aac------aacattttgttgtttc
i triMan1.JH594766         C 0 C 0

a score=224196.000000
s hg38.chr8_KI270814v1_alt   126945 32 +    141812 ctctgattctgttgctgcat----cgttgcca-ctga-
s panTro4.chr8             55029433 32 + 143986469 ctctgattctgttgctgcat----cgttgcca-ttga-
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59170028 32 + 153482349 CACTGATTCTGTTGCTGCAT----TGTTGCCA-TTGA-
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81385549 32 - 104879549 cactgattctgttgctgcat----cgttgcca-ttga-
i nomLeu3.chr18            C 0 C 0
s rheMac3.chr8             61697150 32 + 150158102 cactgattctgttgctgcat----ttttgcca-tgca-
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58370789 32 + 146850525 cactgattctgttgctgcat----tgttgcca-tgca-
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53291420 32 + 139301422 cactgattctgttgctgcat----tgttgcca-tgca-
i chlSab2.chr8             C 0 C 0
s calJac3.chr7             33713242 32 + 155834243 cattgattctgttgctgcat----tgttgtca-ttga-
i calJac3.chr7             C 0 C 0
s saiBol1.JH378196          4070312 32 +   9144518 cattgattcttttcctgcat----tattgcca-ctga-
i saiBol1.JH378196         C 0 C 0
s otoGar3.GL873762          1569004 32 -   1847653 tgttgattctgttgctacat----tgttgcca-ttga-
i otoGar3.GL873762         C 0 C 0
s orcOrc1.KB316915          2919725 32 -  11690531 cattgattctattgctgcag----tgttgcta-ctaa-
i orcOrc1.KB316915         C 0 I 90
s equCab2.chr29            10879954 32 +  33672925 cattgattctgttgctgcag----ggttgcta-ttga-
i equCab2.chr29            C 0 C 0
s cerSim1.JH767738          9912862 32 +  34209287 cattgattctattgctgcag----cattgcta-ttga-
i cerSim1.JH767738         C 0 C 0
s pteAle1.KB031146          3125496 33 -   3193751 cactgattgtattgctgcac----agtggctctttga-
i pteAle1.KB031146         C 0 C 0
s myoLuc2.GL429990           244232 36 -   2104649 tattgattctattgctacatacagagttgcta-ttga-
i myoLuc2.GL429990         C 0 C 0
s loxAfr3.scaffold_15      39460452 33 -  55688157 ctgagcttctcttgttgtaa----cattgcta-ttgaa
i loxAfr3.scaffold_15      C 0 C 0
s triMan1.JH594766            26184 33 +   6345240 tgttgcttgtctggttgtag----cattgcta-ttgaa
i triMan1.JH594766         C 0 C 0
e vicPac2.KB632521          1185255 109 -   7152218 I
e camFer1.KB018161            14077 117 -     34802 I

a score=913396.000000
s hg38.chr8_KI270814v1_alt   126977 127 +    141812 aactgcttcttcagtctgttaacaattgacctttgc-taccaggatgacctcacttatctggatccct--cagtcttcc-tggtgattcacatatagacttcaaagttatt----acttttt----gttttagttcac--a
s panTro4.chr8             55029465 127 + 143986469 aattgcttcttcagtctgttaacaattgacctttgc-taccaggatgacctcacttatctggatccct--cagtcttcc-tggtgattcacatatagacttcaaagttatt----acttttt----gttttagttcac--a
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59170060 127 + 153482349 AACTGCTTCTTCAGTCTGTTAACAATTGACCTTTGC-TGCCAGGGTGACCTCACTTATCTGGATCCCT--CAGTCTTCC-TGGTGATTCACATATAGACTTCAAAGTTATT----ACTTTTT----GTTTTAGTTCAC--T
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81385581 118 - 104879549 aactgctcctgcagtctggtaatgattgacctttgt-gaccaggatgcccttaccaacacagatccct--cagtcttca-tagtg---------tagacttcgaagttatt----acatgtt----tttaaagttcac--g
i nomLeu3.chr18            C 0 C 0
s rheMac3.chr8             61697182 126 + 150158102 aactgcttcttcagtctggtaacga-tgacctttgc-taccaggatgaccttactcatctagatccct--cagtcttcc-tggtgtttcacatatagacttcaaagttact----acttttt----gttttagttcac--a
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58370821 126 + 146850525 aactgcttcttcagtctggtaacaa-tgacctttgc-taccaggatgaccttactcatctagatccct--cagtcttcc-tggtgtttcacatatagacttcaaagttact----acttttt----gttttagttcac--a
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53291452 126 + 139301422 aactgcttcttcagtctggtaacaa-tgacctttgc-taccaggatgaccttactcatctagatccct--cagtcttcc-tggtgtttcacatatagacttcaaagttact----acttttt----gttttagttcac--a
i chlSab2.chr8             C 0 C 0
s calJac3.chr7             33713274 128 + 155834243 aacagcttctgcagtctggaaatgattgacttttgt-gaccaggatgcccttactaatacagatcccT--CAGTCTTCA-TGGTGATCCATATATAGGCTTCAAAGTTATT----ACTTTTT---ATTTTAAGTTTAC--A
i calJac3.chr7             C 0 C 0
s saiBol1.JH378196          4070344 125 +   9144518 aagtggttctgcagtctgttaatgcttgactttt-c-catcaggatttacttactgcttcagagtact--cagttttca-tggtgattcatacatagactttatagttaca----actt-------tttttagttaacaaa
i saiBol1.JH378196         C 0 C 0
s otoGar3.GL873762          1569036 122 -   1847653 acctggtcctgcagtctgat-atgattgatgtttgc-taccaggatgccctgactaattcagatcctt--gagtcttca-tggtgatccataattagactt-aaggttaca----actt-------tttctagtttac--a
i otoGar3.GL873762         C 0 C 0
s vicPac2.KB632521          1185364 123 -   7152218 Aactggtcctgcagtcagatcatgactgagctctgc-ccccaggatgcccttgctgatccaaattctg--cagtcttca-tggtgatccacacatagacttcagggtgaca----actt-------gatt-agttcTG--A
i vicPac2.KB632521         I 109 I 23
s camFer1.KB018161            14194 123 -     34802 Aactggtcctgaagtcagatcatgattgagctctgc-ccctgggatgcccttgctgatccaaattctg--cagtcttca-tggtgatccacatgtagacttcagggtgaca----gctt-------gatt-agttcTG--A
i camFer1.KB018161         I 117 I 53
s orcOrc1.KB316915          2919847 123 -  11690531 aactggtcctgcagtcgggtcacgatcgacctttgc-tcccgggatgcccttgctgatccagattcct--cagtcttca-tggcgatgcacacttagacttcaaagtgaca----actt-------tttt-agttctc--a
i orcOrc1.KB316915         I 90 C 0
s equCab2.chr29            10879986 112 +  33672925 aactggtcctgtagtctggtcgtgattgacctttgc-tcctaggatgcctttgctgatggagatcccc--CTGTATTCA-TGGTGATCCAGATTTAGACTT----------------TT-------TTTTAAGTTAAA--G
i equCab2.chr29            C 0 C 0
s cerSim1.JH767738          9912894 124 +  34209287 aactggtcctgcagtctggtcatgattgacctttgc-tcccaggatgctcttgctgatccagattcct--cagtcttca-cggtggtccacacttagactttcaagttaca----actt-------tttttggttaac--a
i cerSim1.JH767738         C 0 C 0
s pteAle1.KB031146          3125529 116 -   3193751 aactggtcctg-----gggtcgtgattgatctttgc-tcccaggttgccctcgctgatccagatgctt--cagtcttcg-tggtgatccacacttggacttcaaa-ttaaa----actt-------ttt--agattac--a
i pteAle1.KB031146         C 0 C 0
s myoLuc2.GL429990           244268 119 -   2104649 aactgtttctg-----tagtcatgattgacctttgc-tcccaggtcgccattgctgatccagattcct--gAGTTTTCA-TGTTGATTCGCACTTGCACTTGAAAGTTACA----GCTT-------TTTTCAGTTTAC--A
i myoLuc2.GL429990         C 0 C 0
s loxAfr3.scaffold_15      39460485 135 -  55688157 aactgaccctgacatctagttgtgattgacctttgcttacaagaatgcccttgctgacctagatttcTTACAGTCTTTAGCACTAACCCATGCTTAGATGTCAGAGTTATG----TTTTCTTTTTGTTTTTAGTTCAC--A
i loxAfr3.scaffold_15      C 0 C 0
s triMan1.JH594766            26217 139 +   6345240 aactgtccctgcagtctagtcatgattgacctttgcttacaatgatgcccttgctgatctagatcctttacagtcttcagtggtaacccacacttagctgtccaagttacgattttttttttttttttttcagttcac--a
i triMan1.JH594766         C 0 C 0

a score=2796643.000000
s hg38.chr8_KI270814v1_alt   127104 549 +    141812 ----tagatat--------tctcagccattatttcca---aagtgcctgtacgcctgctctgacagttgggcctcctagctttagccacactcatag---------tgacccttcttct--cacactca------aaacctgatatgaaacccacgtcttagcttggacttgtcctAGACCTTCA-AGGTAAATTATCCTCTGA---------------------------------------ATCCCTTGGAATAGTTTGAAACTGTG----AGGTCTAAATAATGTTACAGGAAGAAATCAGAGATTCCTTTCTTCTTTGCTACCAGATCTATGCTCTT-GGCCCCTTTAGATTCTGTGTGGCACCA----TTTTGTAGGTAG---TGGAGGGTCCCATATTATTC----------TGGAAGGACCAATATT--CTGCTTCCCCA-------G-AG-----TAGTG-------------------------------GTTCTTCCCTCAAGTGATCTGTTTTCCGTAAAAGTAAAAATCTCCCAAACTACTTGTGTTTGTATCTTGAGTTTTT--AAAAT--------ATTTTAAAATTCTACCTCACAATGAAGCCATTCGAAAGAATTCA-TGAAATCTCAAGTAA----GTTAGATTAAAC-------------------------AGAGCTAA---GCCTCATCCATGACTCATCAGTATCCA-TGT
s panTro4.chr8             55029592 549 + 143986469 ----tagatat--------tctcagccaTTATTTCCA---AAGTGCCTGTACGCCTGCTCTGACAGTTGGGCCTCCTAGCTTTAGCCACACTCATAG---------TGACCCTTCTTCT--CACACTCA------AAACCTGATATGAAACCCATGTTTTAGCTTGGACTTGTCCTGGACCTTCA-AGGTAAATTATCCTCTGA---------------------------------------ATCCCTTGGAATAGTTTGAAACTGTG----AGGTCTAAATAATGTTACAGGAAGAAATCAGAGATTCCTTTCTTCTTTCCTACCAGATCTATGCCCTT-GGCCCCTTTAGATTCTGTGTGGCACCA----TTTTGTAGGTAG---TGGAGGGTCCCATATTATTC----------TGGAAGGACCAATATT--CTGCTTCCCCA-------G-AG-----TAGTG-------------------------------GTTCTTCCCTCAAGTGATCTGTTTTCCGTAAAAGTAAAAATCTCCCAAACTACTTGTGTTTGTATCTTGAGttttt--aaaat--------attttaaaattCTACCTCACAATGAAGCCATTCGAAAGAATTCA-CGAAATCTCAAGTAA----GTTAGATTTAAC-------------------------AGAGCTAA---GCCTCATCCATGACACATCAGTATCCA-TGT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59170187 544 + 153482349 ----TAGATAT--------TCTCAGCCATTGCTTCCA---AAGTGCCAGTAC-CCTGCTCTGGCAGTTGGGCCTCCTAGCTTTAGCCACACTCATAG---------TGACCCTTCTTCT--CACACTCA------AAACCTGATATGAAACCCACGTCTTAGCTTGGACTTGTCCTTGACCTTCA-AGGTAAATTACCCTCTGA---------------------------------------ATCCCTTGGAATAGTTTGAAACTGTG----AGGTCTAAATAATGTTACAAGAAGAAATCAGGGATTCCTTTCTTCTTTGCTACCAGATCTATGCCCTT-GGCCCCTTTAGATTCTGTGTGGCACCA----TTTTGTATGTAG---TGGAGGGTCCCATATTATTC----------TGGAAGGACCCACATT--CTGCTTCCCCA-------G-AG-----TAGTG-------------------------------GTTCTTCCCTCAAGTGATCTGTTTTCAATAAAAGTAAAAATCTCCCAAACTACTTGCGTCTCTATCTTGAGTTTTT--AAAAT--------ACTTTAAAATTCTACCTCACAGAGAAGCCATTCAAAAGAATTCA-CGAAATCTC----AA----GTTAGATTTAAC-------------------------AGAGCTAA---ATCTCATCCATGACTCATCAGTATCCA-TGT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81385699 608 - 104879549 ----tacatat--------tctcagccaTTGTTTCCA---AAGTACCAGCAC-CCTGCTCTGGCAGCTAGAACTTTTAGCTTTAGCCACACACATAGTGAGCAAATTGACCCTTCTCCT--CACACTCA------AAACCTGATGTGAAACCCACATCTTAGCCTGGACATGGCCTAGACCTTCA-TGGTAAGTTATCCTTTGAG--------TGG-CTTTTTT-CTATTTTCTGTAGCCAACATTAGTTGTTGTAGTTTGAAACTGTAAGTCAGGTTGAAATAATGTTACAGGAAGAAATTAGAAATCCATTTTGTCTTTATTACCAGATCTATATCCCT-GG-CCCTTTATATCCTGTGTAGCACCA----TTTTGTAGGTAG---TGGAAGGTCTCATCTTATTC----------TGTAAAATCCCATGTC--ATCTTTCACAA-------GTTG-----TAGTGGG-----------------TTCCAACTTGTCGTTGTCCCCTCAAGTGATTCTTTTTTCCTAAAAGTAAAAATCTCCCGTGCTACTTACATCTCTACCTCGAGTTTTT--AAAAT--------ATTTTCAAATGCTGCATCACCATGAAGCCATTCAGTAGACTTCA-CTAAATCTCAAGTAAGTTGGTTAGATTTAAC-------------------------AGAGCTAA---GCCTCATCCATCACTGATCAGTCTTCA-CAT
i nomLeu3.chr18            C 0 C 0
s rheMac3.chr8             61697308 549 + 150158102 ----tagatat--------gctcagccTTTATTTCCA---AAGTGCCAGTAC-CCTGCTCTGGCAGTTGGGCTTTCTAGCTTTAGTCACACTCATAG---------TGACCCTTCTTCT--CACACTCA------AAACCTGATACGAAACCCATGTCTTAGCTTGGACTTGTCCTAGACCTTCA-AGGTAAATTATCCTCTGA---------------------------------------ATCCCTTGGAATAGTTTGAAACTGTG----AGGTCCAAATAATGTCACAGGAAGAAATCAGAGATTCCTTTCTTCTTTGCTACCAGATGTATACCCTT-GGCCCCTTTAGATTCTGTGTGGCACCA----TTTTGTAGGTAG---TGGAGAGTACCATATTGTTC----------TGGAAGGACCGATGTT--CTGCTTCCCCA-------G-GG-----TAGTG-------------------------------GTTTTTCCCTCAAGTGATCTGTTTTCCATAAAAGTAAAAATCTCCCAAACTACTTGCATCTCTATCTTGAGttttta-aaaat--------attttaaaattCTACCTCACAATGAAGCCATTCAAAAGAATTCA-CAAAATCTCAAGTAA----GTTAGATTTAAC-------------------------AGAGCTAA---GCCTCATCCATGACTCATCGGTATCCA-TGT
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58370947 549 + 146850525 ----tagatat--------gctcagcctttatttcca---aagtgccagtac-cctgctctggcagttgggctttctagctttagtcacactcatag---------tgacccttcttct--cacactca------aaacctgatatgaaacccatgtcttagcttggacttgtcctAGACCTTCA-AGGTAAATTATCCTCTGA---------------------------------------ATCCCTTGGAATAGTTTGAAACTGTG----AGGTCCAAATAATGTCACAGGAAGAAATCAGAGATTCCTTTCTTCTTTGCTACCAGATGTATACCCTT-GGCCCCTTTAGATTCTGTGTGGCACCA----TTTTGTAGGTAG---TGGAGAGTACCATATTGTTC----------TGGAAGGACCCATGTT--CTGCTTCCCCA-------G-GG-----TAGTG-------------------------------GTTTTTCCCTCAAGTGATCTGTTTTCCATAAAAGTAAAAATCTCCCAAACTACTTGCATCTCTATCTTGAGTTTTTA-AAAAT--------ATTTTAAAATTCTACCTCACAATGAAGCCATTCAAAAGAATTCA-CAAAATCTCAAGTAA----GTTAGATTTAAC-------------------------AGAGCTAA---GCCTCATCCATGACTCATCGGTATCCA-TGT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53291578 549 + 139301422 ----tagatat--------gctcagccTTTATTTCCA---AAGTGCCAGTAC-CCTGCTTTGGCAGTTGGGCCGCCTAGCTTTAGTCACACTCATAG---------TGACCCTTCTTCT--CACACTCA------AAACCTGATATGAAA-CCATGTCTTAGCTTGGACTTGTCCTAGACCTTCA-AGGTAAATTATCCTCTGA---------------------------------------ATCCCTTGGAATAGTTTGAAACTGTG----AGGTCCAAATAATGTCACAGGAAGAAATCAGAGATTCCTTTCTTCTTCGCTACCAGATGTATACCCTT-GGCCCCTTTAGATTCTGTGTCGCACCA----TTTTGTAGGCAG---TGGAGAGTCCCATATTGTTC----------TGGAAGGACCCATGTT--CTGCTTCCCCA-------G-AG-----CAGTG-------------------------------GTTCTTCCCTCAAGAGATCTGTTTTCCATGAAAGTAAAAATCTCCCAAACTACTTGCGTCTCTATCTTGAGTTTTTA-AAAAT--------ATTTAAAAATTCTACCTCTCAATGAAGCCATTCGAAAAAATTCA-CGGAATCTCAAGTAA----GTTAGATTTAAC-------------------------AGGGCTAA--GGCCTCATCCATGACTCATCAGTATCCA-TGT
i chlSab2.chr8             C 0 C 0
s calJac3.chr7             33713402 603 + 155834243 ----TACATAT--------TCTCAGCCATTGTTTCCA---AAGCACCAGCAC-CCTGCTCCAGCAGCTAGGACTTTTAGCTTTAGCCACACACATAGTGATCAAATTGACCCTTCTTCT--CACACTCA------AAACCTGATGTGAAACCCATATCTTAGCTTGGACTTGGCCTAGACCTTCA-TGGTAAG-AATCCTTTGAG--------TGGTTTTTTTT-C-------------------TAGTTGTGATAGTTTGAAACTGTAAGCCAGGTTGAAA------TATAGAAAGAAATTAGTGGTCCATTTAATTTTTGTTACCAGATCTATATCCT--TGTCCCTTTGTATCCTGTGTAGCACCA----TTTTGTAGGTAGTGGAGGAAGGTCTCATCTTGTTC----------TGGAAGGTTCCATGTC--ATCTTTCCCCA-------GTTG-----TAGTGGG-----------------TTCCAACTTGTGGTTTTCCCCTCAAGTGATTCTCTTTTTCTGA-AAGAAAAATCTCCCATGCTACTTGCATCTCTATCTCGAGTTTTT--AAAAT--------ATTTTCAAATTCTGCATCACCATGAAGCCATTCAA-----------TAAATCTCAAGTAAGTTGGTTAGATTTAACCAACTTCATTGATTTAAATCTTCATAGATGTAACTTACTTCATCCATGACTGATCAGTCTTCA-CAT
i calJac3.chr7             C 0 C 0
s saiBol1.JH378196          4070469 601 +   9144518 ----tacgtat--------gctcagccgttgttccca---a------agcat-cctgctctgacagctgggcattctagctttagccacacacatggtgagaaaattgaccatacttcttccacattca------aaaccttatgtggagcccctatcttagcctaggcatagcccaggacttca-tggtaagttatcctctgagg-ccttgttcgtcttttct-ctatcaaat---------attagttgagattgctctaaactgtcaaagaggatcaaattatgttgcagaaagagatcagtg-----------ttttcttactccat-tgtaccctgaggctccttTATATCCTGTTCAGCACAT----TTTCTTAGGGAG---------------------------------TGGAAGGTTCTATATT--ATCCTTCCCCACACCTTGGGTGCCAATTTGTGGGTTTTTTTCTTTTCTTTTTTCTAACTTGTAGTGTTATCCGGAAGTAATCTGTTTTCCACAATAATGAAAATCTCCCAAGTTACTTGCATTTCTATCTTAAGTTTTA--AAAAT--------ATTTTCATATTCTACCTCA-TAGGAAGCCATTCAACAGAATTCT-CTGAATCTCAAGTAGGTTTATTGGGTTTATC-------------------------AGCGCTAA---GCCTCATCCATGATTGATGAATATTCA-TGT
i saiBol1.JH378196         C 0 C 0
s otoGar3.GL873762          1569158 583 -   1847653 ----tacatat--------tctta-----tatgctcagccacgcatcagcac-cctgctgtggcagttgggcctcctaggtttagccatgcacatagtgaggaaattgacccttctccc--cacactca------aaaccttatttggagcccacatcttagcccacattaagac---accttca-tggtaatttctcctttgatgtccttgtttggcttttca-ctagcagat---------agtatatgggattgttct-aactgtcagagaggttcaaataatgtttcaggaagagatcagagtttcctttcttctttgctgccagATCTATATCTCAAGGCCCCTTTCTATCCTGTGTAGCTCCT----TTTCTTAGGTAG---CAGAATGTCCCACATCCCTC---------------------------------TTCCCA-------G-AG-----CAGTG-----------------AGCGCCAACTTGTGGTTGGCTGCTCAAGTGATTTGCTTTCCATATTCACAAAAATCTCTGAAGCTGCTTGCATCTCTACCTCAGGTTTTA--AAAAT--------ATTTTCAAATTGTACCTCACAAGGAAGGCATTTAACACAGCTCT-CTGATTCTAAAGCAGGTTATTTAGAGTGAAC------------------------TTGAACTGA---GCCTCATCTATGCTTTGTCAGTATCCC-TGT
i otoGar3.GL873762         C 0 C 0
s orcOrc1.KB316915          2919970 586 -  11690531 ----tacatatgcctgta-gctcagccactgttcc-a---aagcaccagcgc-ccagttctggcacctgggcctcctagctctagccgcaca---------------caccctccccga--cacactca-----aaaaccttatgtagagcccacatcttagc-----------ccagatcttca-cgatgagttaccctttgaggctcttacttgtcttttctgctagcagat---------gtcaatgggaactgttttaggctttctgagaggttcAGATGCTCCTGCCGGGAGAGAGCTGACTTTCCTTTTTCCTTTGTTACCAGACCTGAACCTCAAGGCTGCTTTCTATCCTGTggggcactt----tttcttaggtcg---tggaaggtcccatatcctcctcc-tcagaggagtgggtgccagcttgcctgagaccccg-------t-aa-----ctgag-------------------------------gttggcccctcaagtgatctgtgttccatgataatgaaaatcttctaaatgatttacatc--tgcctcaacctTC---CAAGT--------ATTTTCAGATTCTGCCTCATAAGGAACCCATTCACCAGAAATCC-CTGAATCTCAAGTAGGTTAGTTGGCATTAGG-------------------------AGAGGTAA---GTCCTGTCCAGGACTTGTCAGCATCCACTGT
i orcOrc1.KB316915         C 0 C 0
s equCab2.chr29            10880098 585 +  33672925 ----GGCATATTCTTGTATGCTCAGGCACTGTTCC-----AAACCCCCACAC-CCCGTCCTGGCAGCTGGGCCTCCTTGCTTTAGCTACACA---------------TACCCTTCCCAC--CACACTCA-----AAAACCCTATGTGCAGCCCACATCTTAGG-----------CCAGAACTTCA-GGATGAGTTACCCTTGGAGGCTCTTGTTTGACTTTTCTGCTAGCAGTT---------GTTAGTTGGGCCCATTCTAAGCTGTCAGAGAAGTTCAAATGATGCTGCAGGAAGAGATCAGACTTTCCTTTCTCCTTTGTTACCAGATCTGAACGCCAAGGCTGCTTTATCTCCTGAGGAGCACCT----TTTCTTAGGTTG---TGGAAGGTCCCCTATCATCCTTC-CCAGAGTAGCGGGTACCAACTTGCCTGAGATCCCA-------T-AA-----TTAAG-------------------------------ATTGGCCCATCAAGTGATCTGTTTTCCATAATAATGAAACTCTCCCAAGTGACTTATATC--TACCTCAAGTTTG---AAAAT--------ATTTTCAGATTCTGCCTCACAAGGAAGCCAGTCAACAGAAATCT-CAGAATCTAAAGTAGGTTAGTTGGCATTGGG-------------------------AGAGCTAA---GCCCCATCCATGACTCATCAGTATCCA-TGT
i equCab2.chr29            C 0 C 0
s cerSim1.JH767738          9913018 585 +  34209287 ----tacatatgcttatatgctcagccattgttcc-----aaacccctacac-tctgttctggcagctgggccttctggctttagcctcaca---------------caccgttccacc--cacactct-----aaaaccctatgtgcagcccacatgttagg-----------tcagaccctca-agatgaattacccttggaggctcttatttgacttttctgctagcagat---------gttagttgggaccattctaagctgtcagagaaattcaaataatgctgcaggaaaagatcagactttcctttctcctttgttaccagatctgaaccccaagtctgctttatatcctgaggagcacct----tttcttaggtca---tggaaggtcccatgtcatccttc-ctagagtagtgggtgccaccttgcctgagattccg-------t-aa-----ttaag-------------------------------gttggcccttcaagtgatttgtcttccgaaataatgaaaatctccaaagtgccttTTATC--TACCTCAAATTTC---AAAAT--------ATTTTAAGATTCTGCCTTGCAAGGAAGCTGTTGAACAGAAATCT-CAGAATCTAAAGTAGGTTAGTTGGCATTAGG-------------------------AGAGCTAA---GCCCCATCTGTGACTCATCAGTATCCA-TGT
i cerSim1.JH767738         C 0 C 0
s pteAle1.KB031146          3125645 576 -   3193751 ----cacatgcgcttttttgctcagccgctgttcc-a---aaccaccagctc-cctgttctggcagttgggcatcctagccttgggcacac----------------aacccttcaccc--cacactca------aaaacctctgtagagc-cacatctgagc-----------ccagaccttca-gcatacgttaccctttgagcattttgtttgtgttttctgctagcagat---------gctagttggaaccatctcaagctgtcag-gaggttcaaataatgctgcaggagaagatcaggcttttctttatcccttgttaacacatctgcatcacaaggccacttgatgtcctgtagagcacct-------cttaggttg---tagaaggtcccatgttgcc-ctc-ccagagtagtaggcaccaacttgtctaagattcca-------t-aa-----ttaag-------------------------------gttgg-ccctcaagtgatctgttttccagaataaagaaaatctcccaagtgacttgAATC--TACCTTAGGGTTC---AAAAT--------ATTTACA-ATTATGCCTCCCATGGAAGCCAGTCAACCGAAAGCT-CTGAATATAAAGTAGGTTATTTGGCCTTAAG-------------------------ATAGCTCA---GCCCCATCCATGACTCATCAATACTCG-TGT
i pteAle1.KB031146         C 0 C 0
s myoLuc2.GL429990           244387 574 -   2104649 ----TATAGATGCTTGTATGCTCAGTCACTATTCC-----AATTACCAGCAC-CCTGTTCTGGAAGCTGGGCCTCCTAG-TTTAGCCACCCACAGCC---------TACCCCTCCGCCC--CACACACACACTGGGAAGCCTATGTGGAGCTCACTTCTTAGC-----------CCAGACCTTTGTGGATGAGTCATCCTTTGAATTTCCTGTT--TGTTTTTTGCTA----------------------GGAACCATTCTAAGCTGTCAGAGAGGTTCAAATAATCCTGCAGGAAAAGACCAGACTTTCCTTTCTCCTTTGTTACCAGATCTGTACCCCAAGG-TACTTTATATC---TGTAGCATCT----TTGTTTAGATAG---TGGAAAGTCCCATATCGCCTTTC-CCAGAGTAGTAGGCACCAACTTGCCTGAGGTTCCA-------T-AA-----TTGAG-------------------------------GTTGGTCCCTCAAGCGATCTCTTTGCTATAACAATGAAACTTTCCCAAGTAAATTGAATT--TACCTCAAGTTTC---AAAGT--------ATTTTAA-ATTGTGCCTCAGATGGAAGCCAGTCAACAGAAAGCTATTGAATCAAAA----GTTATTGATCCTTAGA-------------------------ATTGCTAA--TGTCCCTTCCATGACTCATCAGTATCCA-CAT
i myoLuc2.GL429990         C 0 C 0
s loxAfr3.scaffold_15      39460620 607 -  55688157 TATGCTTATAT--------GTTCAGCCATTGTTCCCA---AAGCACCAGCAT-CCTGCTCAGGCAGCTGGACCTACTAGCTTTTGCCACATACATAGTGAGCAAACTAATCTATTACCC--CAAACTCA------AAACCTTGTGTGGAGCCCACATTTTAGG-----------CCAGACCTTCA-TGGTGAATTACCCTTTGAGGCACTTGTTTGTCTTTTTG-CCAGCAGTT---------GTTAGTAGAGACCATTCCTAGCTGTCGAAGAGGTTCAAATAATGTTGTAGGAAAAGATCACAGT----TTTCTTCTTTGCTACCAAATCTGTATGCCAAAGCCCCTTTATATTCTGTGGAATACCTTGTCTTTCCTCAGTAG----GAAAGGTCTCACATTGTCTTTCTCCAGAGTAGTGGGTACCAACTT-------GCCTTA-------G-AT-----TTCAT------------------------AATTAAGGTTGGCCCCTCAAGTGGTCTG--TCCCCTACTACTGAAAATCTCCCAAGTGACCTATATCACCACCTCAGGTTTTCAGAGAGGCTGGCATAATTTTTAAATTCTGACTCACAAGACAGCCATTCAGTAGAATTCT-TGGAGTCTAAATTAGGTTAGTTGGACTTAGA-------------------------AAAGCTAA---GTCGCATTTATGGTTTATTGGTATTCA-TGT
i loxAfr3.scaffold_15      C 0 C 0
s triMan1.JH594766            26356 607 +   6345240 tatgtttatat--------attcagccgttgttccca---aagcaccagcac-cctgctctggcagcggggcctactagcttttgccatacacatagtgagcaaactgaccctttaccc--cacactta------aaaccttttctggggcccacattttagg-----------ccggaccttca-tggtgaatgactttttgaggcccttgtttgtctttttg-ccagcagtt---------gttagtagagcccattctaagctatc--agaggtttaaataatgttgcaggaaaagatcagagtttcctttcttctttgctaccagatctgtatccccaggaccctctgtatcctatggaatgccttgccttttctcagtag----gaaaggtctcacattgtctttcttcagagtagtgggtaccagctt-------gcctta-------g-at-----ttgat------------------------aattaagattggcccctccagtgatcta--tcccctactaatgaaaatctcccaagttacttatattaccacctctagttttc--agaggctggcataattcttaaattctgactcacaaggcagccATTCAGTAGAATTCT-CAGAATCTAAATTAGGTTAGTTGGACTTGGA-------------------------AGAGCTAA---GTCTCACTCATGATTTATTGATATTCA-TGT
i triMan1.JH594766         C 0 C 0
e vicPac2.KB632521          1185487  23 -   7152218 I
e camFer1.KB018161            14317  53 -     34802 I

a score=5190.000000
s hg38.chr8_KI270814v1_alt   127653 1 +    141812 A
s panTro4.chr8             55030141 1 + 143986469 A
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59170731 1 + 153482349 A
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81386307 1 - 104879549 A
i nomLeu3.chr18            C 0 C 0
s rheMac3.chr8             61697857 1 + 150158102 A
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58371496 1 + 146850525 A
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53292127 1 + 139301422 A
i chlSab2.chr8             C 0 C 0
s calJac3.chr7             33714005 1 + 155834243 A
i calJac3.chr7             C 0 C 0
s saiBol1.JH378196          4071070 1 +   9144518 A
i saiBol1.JH378196         C 0 C 0
s otoGar3.GL873762          1569741 1 -   1847653 A
i otoGar3.GL873762         C 0 C 0
s orcOrc1.KB316915          2920556 1 -  11690531 A
i orcOrc1.KB316915         C 0 C 0
s equCab2.chr29            10880683 1 +  33672925 G
i equCab2.chr29            C 0 C 0
s pteAle1.KB031146          3126221 1 -   3193751 G
i pteAle1.KB031146         C 0 C 0
s myoLuc2.GL429990           244961 1 -   2104649 G
i myoLuc2.GL429990         C 0 I 2
s triMan1.JH594766            26963 1 +   6345240 A
i triMan1.JH594766         C 0 C 0
e vicPac2.KB632521          1185487 23 -   7152218 I
e camFer1.KB018161            14317 53 -     34802 I
e loxAfr3.scaffold_15      39461227 0 -  55688157 C
e cerSim1.JH767738          9913603 0 +  34209287 C

a score=290.000000
s hg38.chr8_KI270814v1_alt   127654 1 +    141812 G
s panTro4.chr8             55030142 1 + 143986469 T
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59170732 1 + 153482349 T
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81386308 1 - 104879549 T
i nomLeu3.chr18            C 0 C 0
s rheMac3.chr8             61697858 1 + 150158102 T
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58371497 1 + 146850525 T
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53292128 1 + 139301422 T
i chlSab2.chr8             C 0 C 0
s calJac3.chr7             33714006 1 + 155834243 C
i calJac3.chr7             C 0 C 0
s saiBol1.JH378196          4071071 1 +   9144518 T
i saiBol1.JH378196         C 0 C 0
s otoGar3.GL873762          1569742 1 -   1847653 T
i otoGar3.GL873762         C 0 C 0
s orcOrc1.KB316915          2920557 1 -  11690531 G
i orcOrc1.KB316915         C 0 C 0
s equCab2.chr29            10880684 1 +  33672925 T
i equCab2.chr29            C 0 C 0
s myoLuc2.GL429990           244964 1 -   2104649 G
i myoLuc2.GL429990         I 2 C 0
s triMan1.JH594766            26964 1 +   6345240 T
i triMan1.JH594766         C 0 C 0
e vicPac2.KB632521          1185487 23 -   7152218 I
e camFer1.KB018161            14317 53 -     34802 I
e loxAfr3.scaffold_15      39461227 0 -  55688157 C
e pteAle1.KB031146          3126222 0 -   3193751 C
e cerSim1.JH767738          9913603 0 +  34209287 C

a score=2308.000000
s hg38.chr8_KI270814v1_alt   127655 1 +    141812 G
s panTro4.chr8             55030143 1 + 143986469 G
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59170733 1 + 153482349 G
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81386309 1 - 104879549 A
i nomLeu3.chr18            C 0 C 0
s rheMac3.chr8             61697859 1 + 150158102 A
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58371498 1 + 146850525 A
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53292129 1 + 139301422 A
i chlSab2.chr8             C 0 I 798
s calJac3.chr7             33714007 1 + 155834243 A
i calJac3.chr7             C 0 C 0
s saiBol1.JH378196          4071072 1 +   9144518 A
i saiBol1.JH378196         C 0 C 0
s otoGar3.GL873762          1569743 1 -   1847653 A
i otoGar3.GL873762         C 0 C 0
s equCab2.chr29            10880685 1 +  33672925 A
i equCab2.chr29            C 0 C 0
s myoLuc2.GL429990           244965 1 -   2104649 G
i myoLuc2.GL429990         C 0 C 0
s triMan1.JH594766            26965 1 +   6345240 G
i triMan1.JH594766         C 0 C 0
e vicPac2.KB632521          1185487 23 -   7152218 I
e camFer1.KB018161            14317 53 -     34802 I
e loxAfr3.scaffold_15      39461227 0 -  55688157 C
e pteAle1.KB031146          3126222 0 -   3193751 C
e cerSim1.JH767738          9913603 0 +  34209287 C
e orcOrc1.KB316915          2920558 0 -  11690531 C

a score=5005.000000
s hg38.chr8_KI270814v1_alt   127656 1 +    141812 A
s panTro4.chr8             55030144 1 + 143986469 A
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59170734 1 + 153482349 A
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81386310 1 - 104879549 A
i nomLeu3.chr18            C 0 C 0
s rheMac3.chr8             61697860 1 + 150158102 A
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58371499 1 + 146850525 A
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53292928 1 + 139301422 a
i chlSab2.chr8             I 798 C 0
s otoGar3.GL873762          1569744 1 -   1847653 A
i otoGar3.GL873762         C 0 C 0
s equCab2.chr29            10880686 1 +  33672925 A
i equCab2.chr29            C 0 C 0
s myoLuc2.GL429990           244966 1 -   2104649 A
i myoLuc2.GL429990         C 0 C 0
s triMan1.JH594766            26966 1 +   6345240 A
i triMan1.JH594766         C 0 C 0
e vicPac2.KB632521          1185487 23 -   7152218 I
e camFer1.KB018161            14317 53 -     34802 I
e calJac3.chr7             33714008 0 + 155834243 C
e loxAfr3.scaffold_15      39461227 0 -  55688157 C
e pteAle1.KB031146          3126222 0 -   3193751 C
e cerSim1.JH767738          9913603 0 +  34209287 C
e orcOrc1.KB316915          2920558 0 -  11690531 C
e saiBol1.JH378196          4071073 0 +   9144518 C

a score=21361.000000
s hg38.chr8_KI270814v1_alt   127657 6 +    141812 AAG-TAG
s panTro4.chr8             55030145 6 + 143986469 AAG-TAG
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59170735 6 + 153482349 AAG-CAG
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81386311 6 - 104879549 AAG-TAA
i nomLeu3.chr18            C 0 C 0
s rheMac3.chr8             61697861 6 + 150158102 AAA-TAG
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58371500 6 + 146850525 AAA-TAG
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53292929 6 + 139301422 aaa-tag
i chlSab2.chr8             C 0 C 0
s calJac3.chr7             33714008 7 + 155834243 AAATTAG
i calJac3.chr7             C 0 C 0
s saiBol1.JH378196          4071073 6 +   9144518 AAG-TAG
i saiBol1.JH378196         C 0 C 0
s otoGar3.GL873762          1569745 6 -   1847653 AGG-TAG
i otoGar3.GL873762         C 0 C 0
s equCab2.chr29            10880687 6 +  33672925 AAG-TAC
i equCab2.chr29            C 0 C 0
s triMan1.JH594766            26967 6 +   6345240 AAA-TAG
i triMan1.JH594766         C 0 C 0
e myoLuc2.GL429990           244967 0 -   2104649 C
e vicPac2.KB632521          1185487 23 -   7152218 I
e camFer1.KB018161            14317 53 -     34802 I
e loxAfr3.scaffold_15      39461227 0 -  55688157 C
e pteAle1.KB031146          3126222 0 -   3193751 C
e cerSim1.JH767738          9913603 0 +  34209287 C
e orcOrc1.KB316915          2920558 0 -  11690531 C

a score=24026.000000
s hg38.chr8_KI270814v1_alt   127663 9 +    141812 AAGTTTGTg
s panTro4.chr8             55030151 9 + 143986469 AAGTCTGTg
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59170741 9 + 153482349 AAGTCTGTg
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81386317 9 - 104879549 GGATTTGTG
i nomLeu3.chr18            C 0 I 11
s rheMac3.chr8             61697867 9 + 150158102 AAGTTTGTg
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58371506 9 + 146850525 AAGTTTGTg
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53292935 9 + 139301422 aaGTTTGTg
i chlSab2.chr8             C 0 C 0
s calJac3.chr7             33714015 9 + 155834243 GGATTTgtg
i calJac3.chr7             C 0 I 12
s saiBol1.JH378196          4071079 9 +   9144518 GGTTTTAtg
i saiBol1.JH378196         C 0 I 9
s otoGar3.GL873762          1569751 9 -   1847653 GGCTTTgtg
i otoGar3.GL873762         C 0 C 0
s equCab2.chr29            10880693 9 +  33672925 AGTTATAgg
i equCab2.chr29            C 0 C 0
e myoLuc2.GL429990           244967 0 -   2104649 C
e vicPac2.KB632521          1185487 23 -   7152218 I
e camFer1.KB018161            14317 53 -     34802 I
e triMan1.JH594766            26973 0 +   6345240 C
e loxAfr3.scaffold_15      39461227 0 -  55688157 C
e pteAle1.KB031146          3126222 0 -   3193751 C
e cerSim1.JH767738          9913603 0 +  34209287 C
e orcOrc1.KB316915          2920558 0 -  11690531 C

a score=2733.000000
s hg38.chr8_KI270814v1_alt   127672 4 +    141812 -gctg
s panTro4.chr8             55030160 4 + 143986469 -gctg
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59170750 4 + 153482349 -gctg
i ponAbe2.chr8             C 0 C 0
s rheMac3.chr8             61697876 4 + 150158102 -gccg
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58371515 4 + 146850525 -gccg
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53292944 4 + 139301422 -gccg
i chlSab2.chr8             C 0 C 0
s otoGar3.GL873762          1569760 4 -   1847653 -cttg
i otoGar3.GL873762         C 0 C 0
s equCab2.chr29            10880702 4 +  33672925 ggct-
i equCab2.chr29            C 0 C 0
e myoLuc2.GL429990           244967 0 -   2104649 C
e vicPac2.KB632521          1185487 23 -   7152218 I
e camFer1.KB018161            14317 53 -     34802 I
e calJac3.chr7             33714024 12 + 155834243 I
e nomLeu3.chr18            81386326 11 - 104879549 I
e triMan1.JH594766            26973 0 +   6345240 C
e loxAfr3.scaffold_15      39461227 0 -  55688157 C
e pteAle1.KB031146          3126222 0 -   3193751 C
e cerSim1.JH767738          9913603 0 +  34209287 C
e orcOrc1.KB316915          2920558 0 -  11690531 C
e saiBol1.JH378196          4071088 9 +   9144518 I

a score=15829.000000
s hg38.chr8_KI270814v1_alt   127676 11 +    141812 ggcacagtggc
s panTro4.chr8             55030164 11 + 143986469 ggcacagtggc
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59170754 11 + 153482349 ggcacagtggc
i ponAbe2.chr8             C 0 C 0
s rheMac3.chr8             61697880 11 + 150158102 ggcacattggc
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58371519 11 + 146850525 ggcacattggc
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53292948 11 + 139301422 ggcaccgtggc
i chlSab2.chr8             C 0 C 0
s equCab2.chr29            10880706 11 +  33672925 tgccccgtggc
i equCab2.chr29            C 0 I 170
e myoLuc2.GL429990           244967  0 -   2104649 C
e vicPac2.KB632521          1185487 23 -   7152218 I
e camFer1.KB018161            14317 53 -     34802 I
e calJac3.chr7             33714024 12 + 155834243 I
e nomLeu3.chr18            81386326 11 - 104879549 I
e triMan1.JH594766            26973  0 +   6345240 C
e loxAfr3.scaffold_15      39461227  0 -  55688157 C
e pteAle1.KB031146          3126222  0 -   3193751 C
e cerSim1.JH767738          9913603  0 +  34209287 C
e orcOrc1.KB316915          2920558  0 -  11690531 C
e otoGar3.GL873762          1569764  0 -   1847653 C
e saiBol1.JH378196          4071088  9 +   9144518 I

a score=253604.000000
s hg38.chr8_KI270814v1_alt   127687 251 +    141812 tcacgcctgtaatcccaggaatttgggaggccgaggtgggtggatcatgaggtcaggagttcgagaccagcttggccaacatggcaaaacactgtctctactaaaaatacaaaaattagccaagcatggtggtgggcacctgtaatcccagctactcccgaggctgaggcaggagattcactt------------------------------gaacccgggaagtggaggttgcagtgagctgagatcgtgccattgtactccagcctgagc----------------------------------------aata--aaag
s panTro4.chr8             55030175 251 + 143986469 tcacgcctgtaatcccaggaatttgggaggccaaggtgggtggatcatgaggtcaggagttcgagaccagcttggacaacatggcaaaacactgtctctactaaaaatacaaaaattagccaagcatggtggtgggcacctgtaatcccagctactcgggaggctgaggcaggagattcactt------------------------------gaacccaggaggtggaggttgcagtgagctgaggtcgtgccgttgtactccagcctgagc----------------------------------------aata--aaag
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59170765 251 + 153482349 tcacgcctgtaatcccaccaatttgggaggccgaggtgggtggatcacgaggtcaggagttctagaccagcttggccaacatggcgaaaccctgtctctactaaaaatacaaaaattagccgagcatggtggtgagcacctgtaatcccagctacatgggaggctgaggcaggagaatcactt------------------------------gaacctaggaggtggaggttgcagtgagctgaggttgtgccattgtattccagcctgggc----------------------------------------gata--agag
i ponAbe2.chr8             C 0 C 0
s rheMac3.chr8             61697891 261 + 150158102 tcatgcctataatctcagcaatttgggaggccgaggtgggtggatcactaggtcaggtgttcgagaccagcttggccaacatagcgaaaccctgtctctactaaaaatacaaaaattagctgagcatggtggtgggcacctgtaatcccagctacttgggaggctgaggcaggagaatcacttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn------------------------------------------------------------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnta--aaaa
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58371530 251 + 146850525 tcatgcctataatctcagcaatttgggaggccgaggtgggtggatcactaggtcaggtgttcgagaccagcttggccaacatagcgaaaccctgtctctactaaaaatacaaaaattagctgagcatggtggtgggcacctgtaatcccagctacttgggaggctgaggcaggagaatcactt------------------------------ggacccgggaggcgcaggttgcagtgagcatagatcgtaccattgcactccagcctgggt----------------------------------------gata--agag
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53292959 253 + 139301422 tcacgcctgtaatctcagcagtttgggagtccgaggtgggtggatctcgaggtcaggagttcgagaccagcttggccaacatatcaaaaccctgtctctactaaaaatacaaaaattagccgagcatagtggtgagcacctgtaatcccagctacttgggaggctgaggcaggagaatcactt------------------------------ggacccgggagaaggaagttgcagtgaggtcagattgtgccattgcactccagcttgggt----------------------------------------gataagagag
i chlSab2.chr8             C 0 C 0
e myoLuc2.GL429990           244967   0 -   2104649 C
e vicPac2.KB632521          1185487  23 -   7152218 I
e camFer1.KB018161            14317  53 -     34802 I
e calJac3.chr7             33714024  12 + 155834243 I
e nomLeu3.chr18            81386326  11 - 104879549 I
e equCab2.chr29            10880717 170 +  33672925 I
e triMan1.JH594766            26973   0 +   6345240 C
e loxAfr3.scaffold_15      39461227   0 -  55688157 C
e pteAle1.KB031146          3126222   0 -   3193751 C
e cerSim1.JH767738          9913603   0 +  34209287 C
e orcOrc1.KB316915          2920558   0 -  11690531 C
e otoGar3.GL873762          1569764   0 -   1847653 C
e saiBol1.JH378196          4071088   9 +   9144518 I

a score=15321.000000
s hg38.chr8_KI270814v1_alt   127938 30 +    141812 catgactccttct---------aaaaaaaaaaaTAGATg
s panTro4.chr8             55030426 29 + 143986469 catgactccttct----------aaaaaaaaaaTAGATg
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59171016 37 + 153482349 catgactccttct--aaaaaaaaaaaaaaaaaGTAGATg
i ponAbe2.chr8             C 0 C 0
s rheMac3.chr8             61698152 29 + 150158102 aaaa----------aaaaaaaaaaaaaaaaaaGTAGACG
i rheMac3.chr8             C 0 I 15
s macFas5.chr8             58371781 39 + 146850525 caagactccatgttaaaaaaaaaaaaaaaaaaGTAGATG
i macFas5.chr8             C 0 I 15
s chlSab2.chr8             53293212 39 + 139301422 caggactccatcttaaaaaaaaaaaaaaaaaaGTAGATG
i chlSab2.chr8             C 0 I 15
s otoGar3.GL873762          1569764  5 -   1847653 catgg----------------------------------
i otoGar3.GL873762         C 0 C 0
e myoLuc2.GL429990           244967  0 -   2104649 C
e vicPac2.KB632521          1185487 23 -   7152218 I
e camFer1.KB018161            14317 53 -     34802 I
e calJac3.chr7             33714024 12 + 155834243 I
e nomLeu3.chr18            81386326 11 - 104879549 I
e equCab2.chr29            10880717 170 +  33672925 I
e triMan1.JH594766            26973  0 +   6345240 C
e loxAfr3.scaffold_15      39461227  0 -  55688157 C
e pteAle1.KB031146          3126222  0 -   3193751 C
e cerSim1.JH767738          9913603  0 +  34209287 C
e orcOrc1.KB316915          2920558  0 -  11690531 C
e saiBol1.JH378196          4071088  9 +   9144518 I

a score=6314.000000
s hg38.chr8_KI270814v1_alt   127968 3 +    141812 gca
s panTro4.chr8             55030455 3 + 143986469 gca
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59171053 3 + 153482349 gca
i ponAbe2.chr8             C 0 C 0
s rheMac3.chr8             61698196 3 + 150158102 gca
i rheMac3.chr8             I 15 C 0
s macFas5.chr8             58371835 3 + 146850525 gca
i macFas5.chr8             I 15 C 0
s chlSab2.chr8             53293266 3 + 139301422 gca
i chlSab2.chr8             I 15 C 0
s saiBol1.JH378196          4071097 3 +   9144518 gca
i saiBol1.JH378196         I 9 C 0
s otoGar3.GL873762          1569769 3 -   1847653 ata
i otoGar3.GL873762         C 0 C 0
e myoLuc2.GL429990           244967 0 -   2104649 C
e vicPac2.KB632521          1185487 23 -   7152218 I
e camFer1.KB018161            14317 53 -     34802 I
e calJac3.chr7             33714024 12 + 155834243 I
e nomLeu3.chr18            81386326 11 - 104879549 I
e equCab2.chr29            10880717 170 +  33672925 I
e triMan1.JH594766            26973 0 +   6345240 C
e loxAfr3.scaffold_15      39461227 0 -  55688157 C
e pteAle1.KB031146          3126222 0 -   3193751 C
e cerSim1.JH767738          9913603 0 +  34209287 C
e orcOrc1.KB316915          2920558 0 -  11690531 C

a score=828251.000000
s hg38.chr8_KI270814v1_alt   127971 330 +    141812 gcacatccactaaaattgaaacaatatagagaagatcagcatgatccctgcacatgggtgacacacaaatttgtgaggt-gttctatatttctTGCAGTCCCCAAAAGGACCTTGGACTACTATCTTACTAGCTCCAAGGAAATGGTGTGAGTCAATGAAAAATG-G-TGACACCCAATATTGAAACTGTGATTTTCA-CACAAAAA--TAT---TTATGTAAGATGATCTATGGAATGA-GATTG-TGCCGGGAAACACATGGGATG-TTGTGTGC-AATATATT-------------------------------------GCTAGTAG-GCATCTAGGAAATGAGAAAATAACAGCTTCCATCCCCATCATGGAACTT
s panTro4.chr8             55030458 330 + 143986469 gcacatccactaaaattgaaacaatatagagaagatcagcatgatccctgcacatgggtgacacacaaatttgtgaggt-gttctatatttCTTGCAGTCCCCAAAAGGACCTTGGACTACTATCTTACTAGCTCCAAGGAAATGGTGTGAGTCAATGAAAAATG-G-TGACACCCAATATTGAAACTGTGATTTTCA-CACAAAAA--TAT---TTATGTAAGATGATCTATGGAATGA-GATTG-TGCCGGGAAACACATGGGATG-TTGTGTGC-AATATATT-------------------------------------GCTAGTAG-GCATCTAGGAAATGAGAAAATATCAGCTTCCATCCCCATCATGGAACTT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59171056 330 + 153482349 gcacatacactaaaattgaaacaatatagagaagatcagcatgatccctacacatgggtgacacacaaatttgtgagga-gttctatatttCTTGCAGTCCCCAAAAGGACATTGGACTACTATCTTACTAGCTCCAAGGAAATGGTGTGAGTCAATGAAAAATG-G-TGACACCCAATATTGAAACTATGATTTTCA-TACAAAAA--TAT---TTATGTAAGGTGATCTATGGAATGA-GATTG-TGCTGGAAAACACATGGGATG-TCCTGTGC-AATATATT-------------------------------------GCTAGTAG-GCATCTAGGAAATGAGAAAATATCAGCTTGCATCCCCTTCATGGAACTT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81386337 328 - 104879549 gtacatatagtaaaattgaaacaacgttgagaagatcagcaaggtccctacacaaggatgacatacaaatatgtaaagt-gttgcatatttctTGCAGTCCCCAAAAGGACATTTTACTACTTTCTAACTAGCTCCAAGGAAATGGTGTGAGTCAAAGCAAAATGCG-TGACACCCAGTATTGCAATTGTGATTTTCA-TACAAAAAATTAT---TTACATACGGTGATCTATGAAATAA-GA------CGTGGTAACACATAGGATC-TTGTGTGC-AATATTTT-------------------------------------GTTAGTGG-GGATCTCAGAAATGAGAAAATACCAACTTGCATCTTCTTTGTAGAACTT
i nomLeu3.chr18            I 11 C 0
s rheMac3.chr8             61698199 307 + 150158102 gcaaatacactaaaattgaaacaatatagagaagatcagcatgatccctgtacatggatgacacacaaatttgtgaggt-gttctatatttCTTGCAGTCTCCAAAAGGACATTTGACTACTGTCTTAGTAGCTCCAATGAAATGTTATGAGTCAATGCAAAATG-G-TGACACC------------------------CACAAAAA--TAT---TTATGTAAGGTGATCTATGGAATGA-GATTG-TGCTGGGAAACACATGGGATG-TTCTGTGC-AATATATT-------------------------------------GCTAGTAG-GCATCCAGGAAAAGAGAAAATATCAGCTTGCTTCCCCTTCATGGAACTT
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58371838 307 + 146850525 gcacatacactaaaattgaaacaatatagagaagatcagcatgatccctgtacatggatgacacacaaatttgtgaggt-gttctatatttCTTGCAGTCTCCAAAAGGACATTTGACTACTGTCTTAGTAGCTCCAATGAAATGTTATGAGTCAATGCAAAATG-G-TGACACC------------------------CACAAAAA--TAT---TTATGTAAGGTGATCTATGGAATGA-GATTG-TGCTGGGAAACACATGGGATG-TTCTGTGC-AATATATT-------------------------------------GCTAGTAG-GCATCCAGGAAAAGAGAAAATATCAGCTTGCATCCCCTTCATGGAACTT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53293269 343 + 139301422 gcacatacactaaaattgaaacaatataga-------------------------ggatgacacacaaatttgtgaagc-gttctatatttCTTGCAGTCCCCAAAAGGACGTTTGACTACTCTCTTACTAGCTCCAATGAAATGTTGTGAATCAATGCAAAATG-G-TGACACCCAATATTAAAATTGTGATTTTTCACACAAAAA--TAT---TTATGTAAGGTGATCTATGGAATGA-GATTG-TGCTGGAAAACACATGGGATG-TTCTGTGC-AATATAGTAGTAGGCAAAAAAACCCTAGTTTTTTCTGTGCAAAAAACTAGTAG-GCATTCAGGAAAAGAGAAAATATCAGCTTGCATCTCCTTCATGGAACTT
i chlSab2.chr8             C 0 C 0
s calJac3.chr7             33714036 330 + 155834243 gtacatatactaaaattgaaacaatgtcgagaagatcagcatggtccctgcacaaggatgacacacaaatctgtgaagt-gttgcatatttCTTGCCGTCCCC-AAAGGACATTTGACGACTTTCTAACTAGCTCCAAGGAAATGGTGTCAGTCAAAGCGCAGTG-GGTGACGCCTAGTACTGCAGTGGTGATTTTCA-TACAAAAA--AAA---TTATGTAAGGTGATCTATAAAATGA-CATAT-TGGTGAGTAATACATAGGAAC-TTCTATGC-AATATGTT-------------------------------------TTTAGTAG-GCATCTCATAAATGAGAAACTACCAACTTGCATCTTCTTTGTGGAACTT
i calJac3.chr7             I 12 C 0
s saiBol1.JH378196          4071100 336 +   9144518 gctcatatactaatactggaataatacagagaaaattaacatggctcctgcataaagatgacacacaaattcatgaggtaggttcatattttGTGCAGTTCCTGGAAGGTCCTTTGACAATTTTCTGATTAGCTCCAAGGAAACAGCATGAGTCAAAGCAAAATG-GTTGGCACTTAATATTGAAATTGTGATCTTCACTACCAAAA--TAC---TCACATACAGTGATCTATGGAATGAGAATGG-AGCTGAGCAAAGCATGGGGATGTTGTGTGCAAATATATT-------------------------------------ATTAGTAT-GTATTTCAGAAATGAGAAAATGTCACCTTGCATCTCCTTCATGGAACTT
i saiBol1.JH378196         C 0 C 0
s otoGar3.GL873762          1569772 328 -   1847653 gtacatatacccaaattgggacaatgcagagaagattagcatggtccctgcccagggatgccacttctgtttatgatgc-atctcatattttGTG---------GAAAGTCATTTGACTACCTGCT-ACTAGACTCAAGGAAACAGTGTGCGTCAAAGTAAAATA-GTTAACATTCAATACTGAAATTATGATTTTCACTACAAAAA--TATCTACTATGTACAGTGACCTATGAAATGA-GAGTGAAGCTGAGTGAATTGTGAGATG-TTGTGGGTAAATATGTT-------------------------------------GATAGTAATGTATCTTGGAAATGAGAAAATGCCAATTTGCATCTCCTTTATGGAACTT
i otoGar3.GL873762         C 0 C 0
e myoLuc2.GL429990           244967   0 -   2104649 C
e vicPac2.KB632521          1185487  23 -   7152218 I
e camFer1.KB018161            14317  53 -     34802 I
e equCab2.chr29            10880717 170 +  33672925 I
e triMan1.JH594766            26973   0 +   6345240 C
e loxAfr3.scaffold_15      39461227   0 -  55688157 C
e pteAle1.KB031146          3126222   0 -   3193751 C
e cerSim1.JH767738          9913603   0 +  34209287 C
e orcOrc1.KB316915          2920558   0 -  11690531 C

a score=14114.000000
s hg38.chr8_KI270814v1_alt   128301 7 +    141812 AAAAAAA-
s panTro4.chr8             55030788 7 + 143986469 AAAAAAA-
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59171386 7 + 153482349 TAAAAAA-
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81386665 7 - 104879549 ACAAAAA-
i nomLeu3.chr18            C 0 C 0
s rheMac3.chr8             61698506 7 + 150158102 TAAAAAA-
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58372145 7 + 146850525 TAAAAAA-
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53293612 7 + 139301422 TAAAAAA-
i chlSab2.chr8             C 0 C 0
s calJac3.chr7             33714366 7 + 155834243 ACAAAAA-
i calJac3.chr7             C 0 C 0
s saiBol1.JH378196          4071436 6 +   9144518 A-AAAAA-
i saiBol1.JH378196         C 0 C 0
s otoGar3.GL873762          1570100 7 -   1847653 GAGAAAA-
i otoGar3.GL873762         C 0 C 0
s equCab2.chr29            10880887 7 +  33672925 -aaaaaaG
i equCab2.chr29            I 170 C 0
e myoLuc2.GL429990           244967 0 -   2104649 C
e vicPac2.KB632521          1185487 23 -   7152218 I
e camFer1.KB018161            14317 53 -     34802 I
e triMan1.JH594766            26973 0 +   6345240 C
e loxAfr3.scaffold_15      39461227 0 -  55688157 C
e pteAle1.KB031146          3126222 0 -   3193751 C
e cerSim1.JH767738          9913603 0 +  34209287 C
e orcOrc1.KB316915          2920558 0 -  11690531 C

a score=7098.000000
s hg38.chr8_KI270814v1_alt   128308 1 +    141812 A
s panTro4.chr8             55030795 1 + 143986469 A
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59171393 1 + 153482349 A
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81386672 1 - 104879549 A
i nomLeu3.chr18            C 0 C 0
s rheMac3.chr8             61698513 1 + 150158102 A
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58372152 1 + 146850525 A
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53293619 1 + 139301422 A
i chlSab2.chr8             C 0 C 0
s calJac3.chr7             33714373 1 + 155834243 A
i calJac3.chr7             C 0 C 0
s saiBol1.JH378196          4071442 1 +   9144518 A
i saiBol1.JH378196         C 0 C 0
s otoGar3.GL873762          1570107 1 -   1847653 A
i otoGar3.GL873762         C 0 C 0
s equCab2.chr29            10880894 1 +  33672925 A
i equCab2.chr29            C 0 C 0
s cerSim1.JH767738          9913603 1 +  34209287 A
i cerSim1.JH767738         C 0 C 0
s loxAfr3.scaffold_15      39461227 1 -  55688157 A
i loxAfr3.scaffold_15      C 0 C 0
e myoLuc2.GL429990           244967 0 -   2104649 C
e vicPac2.KB632521          1185487 23 -   7152218 I
e camFer1.KB018161            14317 53 -     34802 I
e triMan1.JH594766            26973 0 +   6345240 C
e pteAle1.KB031146          3126222 0 -   3193751 C
e orcOrc1.KB316915          2920558 0 -  11690531 C

a score=15405.000000
s hg38.chr8_KI270814v1_alt   128309 3 +    141812 TAA
s panTro4.chr8             55030796 3 + 143986469 TAA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59171394 3 + 153482349 TAA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81386673 3 - 104879549 TAA
i nomLeu3.chr18            C 0 C 0
s rheMac3.chr8             61698514 3 + 150158102 TAA
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58372153 3 + 146850525 TAA
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53293620 3 + 139301422 TAA
i chlSab2.chr8             C 0 C 0
s calJac3.chr7             33714374 3 + 155834243 TAA
i calJac3.chr7             C 0 C 0
s saiBol1.JH378196          4071443 2 +   9144518 TA-
i saiBol1.JH378196         C 0 C 0
s otoGar3.GL873762          1570108 3 -   1847653 GAA
i otoGar3.GL873762         C 0 C 0
s equCab2.chr29            10880895 3 +  33672925 TAA
i equCab2.chr29            C 0 C 0
s cerSim1.JH767738          9913604 3 +  34209287 TAA
i cerSim1.JH767738         C 0 C 0
s pteAle1.KB031146          3126222 3 -   3193751 TAA
i pteAle1.KB031146         C 0 C 0
s loxAfr3.scaffold_15      39461228 3 -  55688157 TAA
i loxAfr3.scaffold_15      C 0 C 0
e myoLuc2.GL429990           244967 0 -   2104649 C
e vicPac2.KB632521          1185487 23 -   7152218 I
e camFer1.KB018161            14317 53 -     34802 I
e triMan1.JH594766            26973 0 +   6345240 C
e orcOrc1.KB316915          2920558 0 -  11690531 C

a score=33109.000000
s hg38.chr8_KI270814v1_alt   128312 6 +    141812 AGGTAA
s panTro4.chr8             55030799 6 + 143986469 AGGTAA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59171397 6 + 153482349 AGGCAA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81386676 6 - 104879549 AGGTAG
i nomLeu3.chr18            C 0 C 0
s rheMac3.chr8             61698517 6 + 150158102 AGGTAA
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58372156 6 + 146850525 AGGTAA
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53293623 6 + 139301422 AGGTAA
i chlSab2.chr8             C 0 C 0
s calJac3.chr7             33714377 6 + 155834243 AGGTAG
i calJac3.chr7             C 0 C 0
s otoGar3.GL873762          1570111 6 -   1847653 AAGTAA
i otoGar3.GL873762         C 0 C 0
s orcOrc1.KB316915          2920558 6 -  11690531 AAGTAG
i orcOrc1.KB316915         C 0 C 0
s equCab2.chr29            10880898 6 +  33672925 AAGTTG
i equCab2.chr29            C 0 C 0
s cerSim1.JH767738          9913607 6 +  34209287 AAGTAA
i cerSim1.JH767738         C 0 C 0
s pteAle1.KB031146          3126225 6 -   3193751 AAGTAG
i pteAle1.KB031146         C 0 C 0
s loxAfr3.scaffold_15      39461231 6 -  55688157 AAATAG
i loxAfr3.scaffold_15      C 0 C 0
e myoLuc2.GL429990           244967 0 -   2104649 C
e vicPac2.KB632521          1185487 23 -   7152218 I
e camFer1.KB018161            14317 53 -     34802 I
e triMan1.JH594766            26973 0 +   6345240 C
e saiBol1.JH378196          4071445 0 +   9144518 C

a score=13967.000000
s hg38.chr8_KI270814v1_alt   128318 2 +    141812 GG
s panTro4.chr8             55030805 2 + 143986469 GG
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59171403 2 + 153482349 GG
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81386682 2 - 104879549 GG
i nomLeu3.chr18            C 0 C 0
s rheMac3.chr8             61698523 2 + 150158102 AG
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58372162 2 + 146850525 GG
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53293629 2 + 139301422 GG
i chlSab2.chr8             C 0 C 0
s calJac3.chr7             33714383 2 + 155834243 TG
i calJac3.chr7             C 0 C 0
s saiBol1.JH378196          4071445 1 +   9144518 -G
i saiBol1.JH378196         C 0 C 0
s otoGar3.GL873762          1570117 2 -   1847653 GG
i otoGar3.GL873762         C 0 C 0
s orcOrc1.KB316915          2920564 2 -  11690531 GC
i orcOrc1.KB316915         C 0 C 0
s equCab2.chr29            10880904 2 +  33672925 GG
i equCab2.chr29            C 0 C 0
s cerSim1.JH767738          9913613 2 +  34209287 GG
i cerSim1.JH767738         C 0 C 0
s pteAle1.KB031146          3126231 2 -   3193751 GG
i pteAle1.KB031146         C 0 C 0
s loxAfr3.scaffold_15      39461237 2 -  55688157 GG
i loxAfr3.scaffold_15      C 0 C 0
s triMan1.JH594766            26973 2 +   6345240 GG
i triMan1.JH594766         C 0 C 0
e myoLuc2.GL429990           244967 0 -   2104649 C
e vicPac2.KB632521          1185487 23 -   7152218 I
e camFer1.KB018161            14317 53 -     34802 I

a score=1334740.000000
s hg38.chr8_KI270814v1_alt   128320 191 +    141812 TTTTTTCTTCCACAGCAGTTGGAGATGAACATGGGGAGTAAGCATTATTTCAACAAAGATTTATTGGTTCAGAGTTTGGGAAGTTTGGTAAAGAATATTAGGAGTCCAAGCCAGGTCTTGACATTCAACAGTTTTCTGCCCTGGGTGTGATTGATGAACTCAGCAACAGGAGATAATCATGTTGTCTGATT
s panTro4.chr8             55030807 191 + 143986469 TTTTTTCTTCCACAGCAGTTGGAGATGAACATGGGGAGTAAGCACTATTTCAACAAAGATTTGTTGGTTCAGAGTTTGGGAAGTTTGGTAAAGAATATTAGGAGTCCAAGCCAGGTCTTGACATTCAACAGTTTTCTGCCCTGGGTGTGATTGATGAACTCAGCAACAGGAGATAATCATGTTGTCTGATT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59171405 191 + 153482349 TTTTGTCTTCCACAGCAGTTGGAGATGAACATGGGGAGTAAGCATTATTTCAACAAAGATTTGTTGGTTTAGAGTTTGGGTAGGTTGGTAAAGAATATTAGGAGTCCAAGCCAGGTCATGACATCCAATAGTTTTCTGCCCTGGGTGTGACTGATGAACTCAGCAATAGGAGATAATCATGTTATCTAATT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81386684 191 - 104879549 TTTTGTCTTCCACAGCAGCTGGAAATGAACGTAGTGACTAAGCTTCATTCTAACAAAGATTTGTTGGTTCAGAGTTTAAGGAGGTAGATAAAGAGTAGTAGTAGTCCAAGCCAGATGCTGACATCTATTAGTTTTCTGCCCTTGGTGTGACTGATGAGCTCAGTAATAGAGTATAATTAGGTTATCTGCTT
i nomLeu3.chr18            C 0 C 0
s rheMac3.chr8             61698525 191 + 150158102 TTTTGTCTTCCACAGCAGTTGGAGATGAACATGGGGAGTAAGCATTATTGCAACAAAGATTTGTTGGTTCAGAGTTTGGGTAGGTTGGTAAAGAGTATTAGGAGTCCAAGCCAGGTCTTGACATCCAATAGTTTTCTGCTCTGGGTGTGATTGACGAACTCAGCAATAGGAGATAATCATGTTGTCTACTT
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58372164 191 + 146850525 TTTTGTCTTCCACAGCAGTTGGAGATGAACATGGGGAGTAAGCATTATTGCAACAAAGATTTGTTGGTTCAGAGTTTGGGTAGGTTGGTAAAGAGTATTAGGAGTCCAAGCCAGGTCTTGACATCCAATAGTTTTCTGCTCTGGGTGTGATTGATGAACTCAGCAATAGGAGATAATCATGTTGTCTACTT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53293631 190 + 139301422 -TTTGTCTTCCACAGCAGTTGGAGATGAACATGGGGAGTAAGCATTATTGCAACAAAGATCTATTGGTTCAGAGTTTGGGTAGGTTGGCAAAAAATATTAGGAGTCCAAGCCAGGTCTTGACATTCAATAGTTTTCTGCTCTGGGTATGATTGATGAACTCAGCAATAGGAGATAATCATGTTATCTAATT
i chlSab2.chr8             C 0 C 0
s calJac3.chr7             33714385 190 + 155834243 TTTTGTCTTCCACAGCAGCTGGAAATGAGCATAGTGACCAAGCATCATTCTAACAAAGATTTGTTGGTTCAGAGTTTAAGTAGGTAGAAAAAGAGTAGTACTAGTCCAAGCCAGTTGCTGACATATATTAGTTTTCTGCCCATGATGTGATTGATGAGCTCAGTAATATAGGAAAATTAGGTTATCCaa-t
i calJac3.chr7             C 0 C 0
s saiBol1.JH378196          4071446 186 +   9144518 TTTTATCTTTTGTGTCAAATGGAGGTAAACATGGAGATTAAGCGTCATTCT-ACAAAGATCTACTGGCTCAGAGTTGGAGTCTGTAAAGAAGAATCAG----AGTCCAAGGCAGGTCTTGATATCTGTTAGTTTTCTGCCCTTGGTGTGATTGGTGAGCTCAGTAACAGTGGACAATTATGTTATCCAATT
i saiBol1.JH378196         C 0 C 0
s otoGar3.GL873762          1570119 188 -   1847653 TTTTGTCTTCCATGTGAGTCAGGGATGAACATGGAGTTTAAGCATCATTTTAACAAAGATCTGGTGGTTCAGAGTTTGGTTAGGTAGAGAAGGAATAGTAGTAGTCCAA-CTTGGGCGTGACAATTATTTGTTTTT--ATCCTGATGTGATTGATTAGCTCACTAGTAGGAAATAGTGATGCTATCTAATT
i otoGar3.GL873762         C 0 I 170
s orcOrc1.KB316915          2920566 188 -  11690531 TTATGTCTTCCAAGTGAATTGGAGAGGAACGTGGAGCTTAAGCATCATTCTAGGAAAGATCTGTTGGTTCAGAGTTTGAGTAGGTAGAGAAGGAGTAGTAGTGGTCCAAGCCAGGTCTGACCTTTGATTAGTTTTCTACTCTTGGTGCGATTAGCTG---CGATAATGGGGGACAGTTATGTTATCTAATT
i orcOrc1.KB316915         C 0 C 0
s equCab2.chr29            10880906 188 +  33672925 TTATGTCTTCCAAGTCAGTTGGAGATGAACATGGAGATTAAGCATCATTCTAACAAAGATCTGCCGATTCAGAGTTTGAGTAGAGAGAGGAGGAGTAGTTGTAGTCCAAGCCAGGTCTTGACTTCCATGAGTTTTCTGCCCTTGGTGTGATTAGCTA---CAATAATAGAGGACAGTTATATTATGTAATT
i equCab2.chr29            C 0 C 0
s cerSim1.JH767738          9913615 188 +  34209287 TTATGTCTTCCAAGTCAGTTGGAGATGAATATGGAGATTAAGCGTCATTCTGATAAAGATCTGCTGGTTCAGAGTTTGAGTAGAGAAAGAAGGAATAGTTGTAGTCCAAGCCGGGTCTTGAATTCTATGAGTTTTCCGCCTTTGGTATGATTAGCTA---CAATAATAGGGGACAATTATGTTATCTAATT
i cerSim1.JH767738         C 0 C 0
s pteAle1.KB031146          3126233 184 -   3193751 TTTTATC-TCAAAGTCTGTTGGGTATGGACAGGGAGATAAAGCATCATTCTAAT-AAGATCTATTAGTTCAGAGTTTGAGTAGGTTGAGAAGTGATAGTAGTAGTCCAAGCCAGGTCTTGACTTCTATTAGTTTTCTGCTGTTGGTATGATTAGCTA---CAGTAGTAGGGGACACTTATGTTATCT--CT
i pteAle1.KB031146         C 0 C 0
s myoLuc2.GL429990           244967 178 -   2104649 TTATATCTTCCAAGCCAATTGGGGGTGGACAGGGAGATTAAGCATCATTCTCATAAAGATCTGCTGGTTTACAGTTTGAGTAGGTAGAGAAGGGATAGTAGTAGTCCAGGCCAAGTTCTGACTTATATTAGTGTTCTGC----------ATTTGCTA---TAAAGATAGGGTAACATTTTGTTATGGGACT
i myoLuc2.GL429990         C 0 C 0
s loxAfr3.scaffold_15      39461239 185 -  55688157 TTACATCTTCTAAGTCATTTGGAGATGAACATGGAGATTAAGCATCATTCTAATAAAGATCTGCTAGTTCAAAGTTAGAGTGGGCTATGAAAGAACAGT---AGTCTGAGCTAGGTCTTGACCTCTATTAATTTTCTGCCTTTGGCATAATTAGCTG---CAACAATAGTGGATAATTATATTATCTAATT
i loxAfr3.scaffold_15      C 0 C 0
s triMan1.JH594766            26975 182 +   6345240 TTATGTCTTTCAAGTCATTTGGAGATGAACGTGGAGATCAAGCATCATTCTAATAAAGATCTTCTAGTTCAGAGTTAGAGTAGGTAATGAAAGAATAGT---AGTCCAAGCTAGGTCTTGACTTCTCTTAATTTTCTGCCCTTGGTGTAATTAGCTG---TGATAATAGTGGACAATCATGTTATCTA---
i triMan1.JH594766         C 0 C 0
e vicPac2.KB632521          1185487  23 -   7152218 I
e camFer1.KB018161            14317  53 -     34802 I

a score=55983.000000
s hg38.chr8_KI270814v1_alt   128511 10 +    141812 TGA-TGAATTA
s panTro4.chr8             55030998 10 + 143986469 TGA-TGAATTA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59171596 10 + 153482349 TGA-TGAATTA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81386875 10 - 104879549 TAA-TGATTTA
i nomLeu3.chr18            C 0 C 0
s rheMac3.chr8             61698716 10 + 150158102 TGA-TGaatta
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58372355 10 + 146850525 TGA-TGAATTA
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53293821 10 + 139301422 TGA-TGAATTA
i chlSab2.chr8             C 0 C 0
s calJac3.chr7             33714575 10 + 155834243 taa-tgaatta
i calJac3.chr7             C 0 C 0
s saiBol1.JH378196          4071632 10 +   9144518 TAA-TGAGATA
i saiBol1.JH378196         C 0 C 0
s otoGar3.GL873762          1570477 10 -   1847653 TGA-TAAGATA
i otoGar3.GL873762         I 170 C 0
s orcOrc1.KB316915          2920754 10 -  11690531 TAA-TGAGGTC
i orcOrc1.KB316915         C 0 C 0
s equCab2.chr29            10881094 10 +  33672925 TCA-CGAGGTC
i equCab2.chr29            C 0 C 0
s cerSim1.JH767738          9913803 10 +  34209287 TCA-TGAGGTC
i cerSim1.JH767738         C 0 C 0
s pteAle1.KB031146          3126417 11 -   3193751 TTACTGAGGTA
i pteAle1.KB031146         C 0 C 0
s myoLuc2.GL429990           245145 10 -   2104649 TCA-TGAGGTA
i myoLuc2.GL429990         C 0 C 0
s loxAfr3.scaffold_15      39461424 10 -  55688157 ACA-TGAGGta
i loxAfr3.scaffold_15      C 0 C 0
s triMan1.JH594766            27157  8 +   6345240 --A-TGAGGTA
i triMan1.JH594766         C 0 C 0
e vicPac2.KB632521          1185487 23 -   7152218 I
e camFer1.KB018161            14317 53 -     34802 I

a score=133637.000000
s hg38.chr8_KI270814v1_alt   128521 15 +    141812 AC-ATATTTA-----TAAATA
s panTro4.chr8             55031008 15 + 143986469 AC-atattta-----taaata
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59171606 15 + 153482349 AC-atattta-----taaata
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81386885 15 - 104879549 AT-ATATTTA-----TAAATA
i nomLeu3.chr18            C 0 C 0
s rheMac3.chr8             61698726 14 + 150158102 at-atattta-----taaat-
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58372365 14 + 146850525 AT-ATATTTA-----TAAAT-
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53293831 14 + 139301422 AT-ATACTTA-----TAAAT-
i chlSab2.chr8             C 0 C 0
s calJac3.chr7             33714585 15 + 155834243 at-atattta-----ttaata
i calJac3.chr7             C 0 C 0
s saiBol1.JH378196          4071642 15 +   9144518 AT-GTGTTTA-----TAAATA
i saiBol1.JH378196         C 0 C 0
s otoGar3.GL873762          1570487 15 -   1847653 AT-ATATTCC-----TAAATA
i otoGar3.GL873762         C 0 C 0
s vicPac2.KB632521          1185510 15 -   7152218 AT-ATATATA-----TAAATA
i vicPac2.KB632521         I 23 C 0
s camFer1.KB018161            14370 15 -     34802 at-atatata-----taaata
i camFer1.KB018161         I 53 C 0
s orcOrc1.KB316915          2920764 15 -  11690531 AT-ATATTTA-----TAAATA
i orcOrc1.KB316915         C 0 C 0
s equCab2.chr29            10881104 15 +  33672925 AT-ATATTTA-----TAAGTA
i equCab2.chr29            C 0 C 0
s cerSim1.JH767738          9913813 15 +  34209287 AT-ATATTTA-----TAAATA
i cerSim1.JH767738         C 0 C 0
s pteAle1.KB031146          3126428 15 -   3193751 AT-ATATTTA-----TAAATA
i pteAle1.KB031146         C 0 C 0
s myoLuc2.GL429990           245155 16 -   2104649 ATCCTATCTA-----ATAATA
i myoLuc2.GL429990         C 0 I 356
s loxAfr3.scaffold_15      39461434 20 -  55688157 at-atatttatattgtaaata
i loxAfr3.scaffold_15      C 0 C 0
s triMan1.JH594766            27165 20 +   6345240 AT-AAATTTATACTATAAATA
i triMan1.JH594766         C 0 C 0

a score=770942.000000
s hg38.chr8_KI270814v1_alt   128536 121 +    141812 ATTTTTATTACAAATTATGAAA-----TAG-ATGCCCTG-AATTACAAGCCATAAA-AAAAGAACATCTAATAATCAAGAGTAGGACTTAATAACATTTTC--TGAAAACTGCAACATTTGAATAG----TAGAA
s panTro4.chr8             55031023 121 + 143986469 atttttattacaaattatGAAA-----TAG-ATGCCCTG-AATTACAAGCCATAAA-AATAGAACATCTAATAATCAAGAGTAGGACTTAATAACATTTTC--TGAAAACTGCAACATTTGAATAC----TAGAA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59171621 122 + 153482349 atttttattacaaattatGAAA-----TAG-ATGCCCTG-AATTATAAGCCACAAAGAATAGAACATCTAGTAACCAAGAGTAGGACTTAATAACAGTTTC--TGAAAACTGCAACATTTGAATAC----TAGAA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81386900 121 - 104879549 AATTTCATTACAAAATATAAAATAGCTTAG-ATGCTCTG-AATTACAAGCCACAAAGAATAGAACATCTGATATCCAAAAGTAGGAATTAATAACA--------GAAAATTGCAATATATGAATAT----TATAA
i nomLeu3.chr18            C 0 C 0
s rheMac3.chr8             61698740 122 + 150158102 atttttattacaaattatGAAA-----TAG-ATGCCCTG-AATTACAAGTCACAAGGAATAGAACATTTAATAACCAAGAGTAGGACTTAATAACAGTTTC--TGAAAACTGCAACATTTGAATAC----TAGAA
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58372379 122 + 146850525 ATTTTTATTACAAATTATGAAA-----TAG-ATGCCCTG-AATTACAAGTCACAAGGAATAGAACATTTAATAACCAAGAGTAGGACTTAATAACAGTTTC--TGAAAACTGCAACATTTGAATAC----TAGAA
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53293845 122 + 139301422 ATTTTTATTACAAATTATAAAA-----TAG-ATACCCTG-AATTACAAACCACAAAGAAAAGAACATCTAATAACCAAGAGTAGGACTTAGTAACAGTTTC--TGAAAACTGCAACATTTGAATAC----TAGAA
i chlSab2.chr8             C 0 C 0
s calJac3.chr7             33714600 119 + 155834243 aattttattacaaattataaaataGCTTAG-ATGTCCTG-AATTACAAGCTACAAAAAATAGAACATCTAATAATCAAAAGTAGGAATTAATA----------CCAAAATTGCAATATTTTGATGT----TATAA
i calJac3.chr7             C 0 C 0
s saiBol1.JH378196          4071657 127 +   9144518 AATGTAGTTACAAACTATGAAATATATGAG-ATGCCCTA-AATTAAAAGCCACAAAGAGTAGAATACCTAATAGACAAAATTAGGATTTAATAACATTTCC--CCAAAACCATAATGTTTCAATAT----TAGAA
i saiBol1.JH378196         C 0 C 0
s otoGar3.GL873762          1570502 118 -   1847653 AATTTTGTTACACATTATGAAT-AGCTGAG-ATACACTG-AATTATAAGCCACA-----TAGCACAGCTAATGCTCCAAATTAGGATTTAATA---TTTTC--TAGAAACTGCAGCATTTGTCTAT----TAGAA
i otoGar3.GL873762         C 0 C 0
s vicPac2.KB632521          1185525 118 -   7152218 CATTTAGCTACAAATTACATAATAGCTGAG-GTG-CGTG-AATTATAAACCATGAAGAA-AGAACAGCTAATCACCATAA-------TTAGTAAAATTTTT-ATAAAAACTGAAGCATTTAAATGT----TA-CA
i vicPac2.KB632521         C 0 C 0
s camFer1.KB018161            14385 118 -     34802 catttagctacaaattatataataGCTGAG-GTG-CGTG-AATTATAAACCATGAAGAA-AGAACAGCTAATCACCATAA-------TTAGTAGCATTTTT-ATAAAAACTGCAGCATTTAAATGT----TA-CA
i camFer1.KB018161         C 0 C 0
s orcOrc1.KB316915          2920779 120 -  11690531 CATTCAGTTACAAATTATAGAATAGCCGAGAGTC-CTTG-AATTACAAAGCACAAAGAA-AGGACAGCTAATCACCCTGA-------TTACTGACATTTTTCCTGAAAACTGCAACATTAGAATGT----TA-AA
i orcOrc1.KB316915         C 0 C 0
s equCab2.chr29            10881119 117 +  33672925 AATTTAGTTACAAGTTATATAATAGCTGAG-ATGCCCTG-AATTACAAACCACAAAGAA-AGAATAGCTAATAACC--AA-------TTAATAACATCTTC--TGAAAACTGCAGCATTTGAATGT----TAGAA
i equCab2.chr29            C 0 C 0
s cerSim1.JH767738          9913828 119 +  34209287 AATTGAGTTAGAAGTTATGTAATAGCTGAA-ATGCCCTG-AATTACAAACCACAAAGAA-AGAACAGCTAATAACCAAAA-------TTAATAACATCTTC--TGAAAACTGCAACATTTGAACGT----TAGAA
i cerSim1.JH767738         C 0 C 0
s pteAle1.KB031146          3126443 119 -   3193751 TATTTAGTTACAAATTATGTGATAGCTGAG-ATGCCTTG-AATGACAACCCACAAAGAA-AGAACAGCTAAGAACCAAAA-------TTAATAACATTTTC--TGAAACCTGCAACATCTGAAATT----TAGCA
i pteAle1.KB031146         C 0 C 0
s loxAfr3.scaffold_15      39461454 117 -  55688157 aatttaGTTACAAGTTATGTAGTTGCTGAG-ATGCCGTGAAATTAC-AAACACAG-----ACAACAGCTAATAACCAAAATTAGGATTTAGTAATATTTTC--TGAAAGATGCAGCAGttaaatat---------
i loxAfr3.scaffold_15      C 0 C 0
s triMan1.JH594766            27185 122 +   6345240 AGTTTAGTTACAAATTATGTAGTTGCTGAG-ATGCCCTGAAAGTATAAAACACAA-----AGAACAGCTAATAACCAAAATTAAGACTTAATAACATTTTC--TGAAAAATGCAACATTTGAATATAGAG-----
i triMan1.JH594766         C 0 C 0
e myoLuc2.GL429990           245171 356 -   2104649 I

a score=60495.000000
s hg38.chr8_KI270814v1_alt   128657 13 +    141812 CCTATGAAGAAAT
s panTro4.chr8             55031144 13 + 143986469 CCTATGAAGAAAT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59171743 13 + 153482349 CCTATGAAGAAAT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81387021 13 - 104879549 CCTATGAAGAAAC
i nomLeu3.chr18            C 0 C 0
s rheMac3.chr8             61698862 13 + 150158102 CCTATGAAGAAAT
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58372501 13 + 146850525 CCTATGAAGAAAT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53293967 13 + 139301422 CCTATGAAGAAAT
i chlSab2.chr8             C 0 C 0
s calJac3.chr7             33714719 13 + 155834243 ACTATGAAGACTC
i calJac3.chr7             C 0 C 0
s otoGar3.GL873762          1570620 13 -   1847653 TTTATGAATAAAT
i otoGar3.GL873762         C 0 C 0
s vicPac2.KB632521          1185643 13 -   7152218 CCCATGACAAAAT
i vicPac2.KB632521         C 0 C 0
s camFer1.KB018161            14503 13 -     34802 CCCATGTGAAAAC
i camFer1.KB018161         C 0 C 0
s orcOrc1.KB316915          2920899 13 -  11690531 CCTATGAAAAGAC
i orcOrc1.KB316915         C 0 C 0
s equCab2.chr29            10881236 13 +  33672925 CATATGAAAAAAC
i equCab2.chr29            C 0 C 0
s cerSim1.JH767738          9913947 13 +  34209287 ACTTTAGAAAAAG
i cerSim1.JH767738         C 0 C 0
s pteAle1.KB031146          3126562 11 -   3193751 CCTATGAAAAA--
i pteAle1.KB031146         C 0 C 0
s loxAfr3.scaffold_15      39461571  2 -  55688157 ----------aa-
i loxAfr3.scaffold_15      C 0 C 0
s triMan1.JH594766            27307 12 +   6345240 CCTATTAAGAAA-
i triMan1.JH594766         C 0 C 0
e myoLuc2.GL429990           245171 356 -   2104649 I
e saiBol1.JH378196          4071784  0 +   9144518 C

a score=-4172.000000
s hg38.chr8_KI270814v1_alt   128670 7 +    141812 ACAC-TTT
s panTro4.chr8             55031157 7 + 143986469 ACAC-TTT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59171756 8 + 153482349 ACACattt
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81387034 6 - 104879549 ACA--TTT
i nomLeu3.chr18            C 0 C 0
s rheMac3.chr8             61698875 8 + 150158102 ACACATTT
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58372514 8 + 146850525 ACACATTT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53293980 8 + 139301422 GCACATTT
i chlSab2.chr8             C 0 C 0
s calJac3.chr7             33714732 5 + 155834243 TC---TTT
i calJac3.chr7             C 0 C 0
s otoGar3.GL873762          1570633 6 -   1847653 ACACAT--
i otoGar3.GL873762         C 0 C 0
s vicPac2.KB632521          1185656 7 -   7152218 ATACATT-
i vicPac2.KB632521         C 0 C 0
s camFer1.KB018161            14516 7 -     34802 ACACATT-
i camFer1.KB018161         C 0 C 0
s orcOrc1.KB316915          2920912 7 -  11690531 ACACACA-
i orcOrc1.KB316915         C 0 I 9
s cerSim1.JH767738          9913960 7 +  34209287 ACGCACT-
i cerSim1.JH767738         C 0 C 0
e myoLuc2.GL429990           245171 356 -   2104649 I
e equCab2.chr29            10881249 0 +  33672925 C
e triMan1.JH594766            27319 0 +   6345240 C
e loxAfr3.scaffold_15      39461573 0 -  55688157 C
e pteAle1.KB031146          3126573 0 -   3193751 C
e saiBol1.JH378196          4071784 0 +   9144518 C

a score=-6751.000000
s hg38.chr8_KI270814v1_alt   128677 13 +    141812 TTT---TAAAAtttat
s panTro4.chr8             55031164 13 + 143986469 TTT---TAAAAtttat
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59171764 13 + 153482349 tta---aaaaatttat
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81387040 13 - 104879549 TTT---TATTGTTTTT
i nomLeu3.chr18            C 0 C 0
s rheMac3.chr8             61698883 16 + 150158102 TTTAAAAAAAAtttat
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58372522 15 + 146850525 TTT-AAAAAAATTTat
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53293988 15 + 139301422 TTA-AAAAAAATTTat
i chlSab2.chr8             C 0 C 0
s calJac3.chr7             33714737 13 + 155834243 TTA---AAAAAATTCT
i calJac3.chr7             C 0 C 0
s otoGar3.GL873762          1570639 10 -   1847653 ------AGAGTTTTAT
i otoGar3.GL873762         C 0 C 0
s orcOrc1.KB316915          2920928 13 -  11690531 ---TAATATGATTTTT
i orcOrc1.KB316915         I 9 C 0
s cerSim1.JH767738          9913967  9 +  34209287 -------GTGTTTTAT
i cerSim1.JH767738         C 0 C 0
s loxAfr3.scaffold_15      39461573  4 -  55688157 -------aaaa-----
i loxAfr3.scaffold_15      C 0 C 0
s triMan1.JH594766            27319  9 +   6345240 -------AAAACACAT
i triMan1.JH594766         C 0 C 0
e myoLuc2.GL429990           245171 356 -   2104649 I
e vicPac2.KB632521          1185663  0 -   7152218 C
e camFer1.KB018161            14523  0 -     34802 C
e equCab2.chr29            10881249  0 +  33672925 C
e pteAle1.KB031146          3126573  0 -   3193751 C
e saiBol1.JH378196          4071784  0 +   9144518 C

a score=-7828.000000
s hg38.chr8_KI270814v1_alt   128690 12 +    141812 tttt---aa----------tttgta
s panTro4.chr8             55031177 12 + 143986469 tttt---aa----------tttgta
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59171777 12 + 153482349 tttt---aG----------tttgta
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81387053 22 - 104879549 TTTT---TGTAATTTAAtttttgta
i nomLeu3.chr18            C 0 C 0
s rheMac3.chr8             61698899 13 + 150158102 tttt---aa---------ctttgtt
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58372537 13 + 146850525 tttt---aa---------ctttgtt
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53294003 13 + 139301422 tttt---aa---------ctttgtt
i chlSab2.chr8             C 0 C 0
s calJac3.chr7             33714750  9 + 155834243 ttt----------------tttgta
i calJac3.chr7             C 0 C 0
s otoGar3.GL873762          1570649  8 -   1847653 TTGA---AA----------TT----
i otoGar3.GL873762         C 0 C 0
s orcOrc1.KB316915          2920941 15 -  11690531 TTAAGTTAA----------tttata
i orcOrc1.KB316915         C 0 I 333
s cerSim1.JH767738          9913976  8 +  34209287 TTGG---AA----------TT----
i cerSim1.JH767738         C 0 C 0
s loxAfr3.scaffold_15      39461577  8 -  55688157 -------aa----------tatata
i loxAfr3.scaffold_15      C 0 C 0
e myoLuc2.GL429990           245171 356 -   2104649 I
e vicPac2.KB632521          1185663  0 -   7152218 C
e camFer1.KB018161            14523  0 -     34802 C
e equCab2.chr29            10881249  0 +  33672925 C
e triMan1.JH594766            27328  0 +   6345240 C
e pteAle1.KB031146          3126573  0 -   3193751 C
e saiBol1.JH378196          4071784  0 +   9144518 C

a score=15635.000000
s hg38.chr8_KI270814v1_alt   128702 7 +    141812 gagata-g
s panTro4.chr8             55031189 7 + 143986469 gagata-g
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59171789 7 + 153482349 gagata-g
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81387075 7 - 104879549 gagaca-t
i nomLeu3.chr18            C 0 C 0
s rheMac3.chr8             61698912 7 + 150158102 gagata-g
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58372550 7 + 146850525 gagata-g
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53294016 7 + 139301422 gagata-g
i chlSab2.chr8             C 0 C 0
s calJac3.chr7             33714759 8 + 155834243 gagacagg
i calJac3.chr7             C 0 C 0
s loxAfr3.scaffold_15      39461585 7 -  55688157 GAGAGA-G
i loxAfr3.scaffold_15      C 0 I 15
e myoLuc2.GL429990           245171 356 -   2104649 I
e vicPac2.KB632521          1185663 0 -   7152218 C
e camFer1.KB018161            14523 0 -     34802 C
e equCab2.chr29            10881249 0 +  33672925 C
e triMan1.JH594766            27328 0 +   6345240 C
e pteAle1.KB031146          3126573 0 -   3193751 C
e cerSim1.JH767738          9913984 0 +  34209287 C
e orcOrc1.KB316915          2920956 333 -  11690531 I
e otoGar3.GL873762          1570657 0 -   1847653 C
e saiBol1.JH378196          4071784 0 +   9144518 C

a score=129175.000000
s hg38.chr8_KI270814v1_alt   128709 89 +    141812 ggtctctctatgttgcccaggctggtcttgaactcctgggctcaagcagtcctcctgtctcagcctcccaa-agtgctg------gcatcacaggc
s panTro4.chr8             55031196 89 + 143986469 ggtctctctatgttgcccaggctggtcttgaactcctgggctcaagcagtcctcctgtctcagcctcccaa-agtgctg------gcatcacaggc
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59171796 95 + 153482349 ggtctccctatgttgcccaggctggtcttgaactcctgggctcaagcaatcctcctgtctcagcctcccaa-agtgctggcatcagcatcacaggc
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81387082 89 - 104879549 ggtctccctatgttgcccaggctggtcttgaacttctggactcaagcaatcctcctgtctcagcatcccaa-agtgctt------gcgtcacaagc
i nomLeu3.chr18            C 0 C 0
s rheMac3.chr8             61698919 89 + 150158102 gatctccctatgttgcccaggctggtcttgaactcctgggctcaagcaatcctcttgtctcagcctcccaa-agtgctg------gcatcacaggc
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58372557 89 + 146850525 gatctccctatgttgcccaggctggtcttgaactcctgggctcaagcaatcctcttgtctcagcctcccaa-agtgctg------gcatcacaggc
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53294023 89 + 139301422 gatctccctatgttgcccaggcttgtcttgaactcctgggctcaagtagtcctcctgtctcagcctcccaa-agtgctg------gcatcacaggc
i chlSab2.chr8             C 0 C 0
s calJac3.chr7             33714767 89 + 155834243 ggtcttcctatgttatccaggctagtattgaaattctgggctcaaggaatcctcctgtcccagcatcccaa-agtgctt------gcatcacaggc
i calJac3.chr7             C 0 C 0
s otoGar3.GL873762          1570657 10 -   1847653 ----------------------------------------CTAAAACAGT----------------------------------------------
i otoGar3.GL873762         C 0 C 0
s cerSim1.JH767738          9913984  5 +  34209287 -------------------------------------------------------------------CCAAC------------------------
i cerSim1.JH767738         C 0 C 0
s pteAle1.KB031146          3126573  3 -   3193751 --------------------------------------------------------------------CAA-------------------------
i pteAle1.KB031146         C 0 C 0
e myoLuc2.GL429990           245171 356 -   2104649 I
e vicPac2.KB632521          1185663  0 -   7152218 C
e camFer1.KB018161            14523  0 -     34802 C
e equCab2.chr29            10881249  0 +  33672925 C
e triMan1.JH594766            27328  0 +   6345240 C
e loxAfr3.scaffold_15      39461592 15 -  55688157 I
e orcOrc1.KB316915          2920956 333 -  11690531 I
e saiBol1.JH378196          4071784  0 +   9144518 C

a score=29536.000000
s hg38.chr8_KI270814v1_alt   128798 11 +    141812 atgagcctctg
s panTro4.chr8             55031285 11 + 143986469 atgagcctctg
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59171891 11 + 153482349 atgagccactg
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81387171 11 - 104879549 atgagccactg
i nomLeu3.chr18            C 0 C 0
s rheMac3.chr8             61699008 11 + 150158102 atgagccactg
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58372646 11 + 146850525 atgagccactg
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53294112 11 + 139301422 atgagccactg
i chlSab2.chr8             C 0 C 0
s calJac3.chr7             33714856 11 + 155834243 atgagccactg
i calJac3.chr7             C 0 C 0
s cerSim1.JH767738          9913989 11 +  34209287 ATGAACGTTAG
i cerSim1.JH767738         C 0 C 0
s myoLuc2.GL429990           245527 11 -   2104649 ACTAACATTTG
i myoLuc2.GL429990         I 356 C 0
e vicPac2.KB632521          1185663  0 -   7152218 C
e camFer1.KB018161            14523  0 -     34802 C
e equCab2.chr29            10881249  0 +  33672925 C
e triMan1.JH594766            27328  0 +   6345240 C
e loxAfr3.scaffold_15      39461592 15 -  55688157 I
e pteAle1.KB031146          3126576  0 -   3193751 C
e orcOrc1.KB316915          2920956 333 -  11690531 I
e otoGar3.GL873762          1570667  0 -   1847653 C
e saiBol1.JH378196          4071784  0 +   9144518 C

a score=10265.000000
s hg38.chr8_KI270814v1_alt   128809 6 +    141812 catctg
s panTro4.chr8             55031296 6 + 143986469 catctg
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59171902 6 + 153482349 catctg
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81387182 6 - 104879549 caccag
i nomLeu3.chr18            C 0 C 0
s rheMac3.chr8             61699019 6 + 150158102 catctg
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58372657 6 + 146850525 catctg
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53294123 6 + 139301422 catctg
i chlSab2.chr8             C 0 C 0
s calJac3.chr7             33714867 6 + 155834243 caccag
i calJac3.chr7             C 0 C 0
s saiBol1.JH378196          4071784 6 +   9144518 CATATA
i saiBol1.JH378196         C 0 C 0
s otoGar3.GL873762          1570667 4 -   1847653 --TTTA
i otoGar3.GL873762         C 0 C 0
s cerSim1.JH767738          9914000 6 +  34209287 AAACTT
i cerSim1.JH767738         C 0 C 0
s myoLuc2.GL429990           245538 6 -   2104649 AATGTT
i myoLuc2.GL429990         C 0 C 0
e vicPac2.KB632521          1185663 0 -   7152218 C
e camFer1.KB018161            14523 0 -     34802 C
e equCab2.chr29            10881249 0 +  33672925 C
e triMan1.JH594766            27328 0 +   6345240 C
e loxAfr3.scaffold_15      39461592 15 -  55688157 I
e pteAle1.KB031146          3126576 0 -   3193751 C
e orcOrc1.KB316915          2920956 333 -  11690531 I

a score=2188.000000
s hg38.chr8_KI270814v1_alt   128815 2 +    141812 ac
s panTro4.chr8             55031302 2 + 143986469 ac
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59171908 2 + 153482349 AG
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81387188 2 - 104879549 gc
i nomLeu3.chr18            C 0 C 0
s rheMac3.chr8             61699025 2 + 150158102 ac
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58372663 2 + 146850525 ac
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53294129 2 + 139301422 ac
i chlSab2.chr8             C 0 C 0
s calJac3.chr7             33714873 2 + 155834243 gc
i calJac3.chr7             C 0 C 0
s saiBol1.JH378196          4071790 2 +   9144518 AA
i saiBol1.JH378196         C 0 C 0
s otoGar3.GL873762          1570671 2 -   1847653 GC
i otoGar3.GL873762         C 0 C 0
s cerSim1.JH767738          9914006 2 +  34209287 TG
i cerSim1.JH767738         C 0 C 0
s myoLuc2.GL429990           245544 2 -   2104649 AC
i myoLuc2.GL429990         C 0 C 0
s loxAfr3.scaffold_15      39461607 2 -  55688157 AC
i loxAfr3.scaffold_15      I 15 C 0
e vicPac2.KB632521          1185663 0 -   7152218 C
e camFer1.KB018161            14523 0 -     34802 C
e equCab2.chr29            10881249 0 +  33672925 C
e triMan1.JH594766            27328 0 +   6345240 C
e pteAle1.KB031146          3126576 0 -   3193751 C
e orcOrc1.KB316915          2920956 333 -  11690531 I

a score=6050.000000
s hg38.chr8_KI270814v1_alt   128817 2 +    141812 AA
s panTro4.chr8             55031304 2 + 143986469 AA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59171910 2 + 153482349 AA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81387190 2 - 104879549 cA
i nomLeu3.chr18            C 0 C 0
s rheMac3.chr8             61699027 2 + 150158102 AA
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58372665 2 + 146850525 AA
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53294131 2 + 139301422 GA
i chlSab2.chr8             C 0 C 0
s calJac3.chr7             33714875 2 + 155834243 cA
i calJac3.chr7             C 0 C 0
s saiBol1.JH378196          4071792 2 +   9144518 AA
i saiBol1.JH378196         C 0 C 0
s otoGar3.GL873762          1570673 2 -   1847653 AA
i otoGar3.GL873762         C 0 C 0
s cerSim1.JH767738          9914008 2 +  34209287 AG
i cerSim1.JH767738         C 0 I 5
s myoLuc2.GL429990           245546 2 -   2104649 AA
i myoLuc2.GL429990         C 0 C 0
s loxAfr3.scaffold_15      39461609 2 -  55688157 AT
i loxAfr3.scaffold_15      C 0 C 0
s triMan1.JH594766            27328 2 +   6345240 AA
i triMan1.JH594766         C 0 C 0
e vicPac2.KB632521          1185663 0 -   7152218 C
e camFer1.KB018161            14523 0 -     34802 C
e equCab2.chr29            10881249 0 +  33672925 C
e pteAle1.KB031146          3126576 0 -   3193751 C
e orcOrc1.KB316915          2920956 333 -  11690531 I

a score=30677.000000
s hg38.chr8_KI270814v1_alt   128819  8 +    141812 AC------------ACAT-TG
s panTro4.chr8             55031306  8 + 143986469 AC------------ACAT-TG
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59171912  8 + 153482349 AC------------ACAT-TG
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81387192  8 - 104879549 AT------------ATAT-TG
i nomLeu3.chr18            C 0 C 0
s rheMac3.chr8             61699029  8 + 150158102 AC------------ACGT-TG
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58372667  8 + 146850525 AC------------ACGT-TG
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53294133  8 + 139301422 AC------------ACGT-TG
i chlSab2.chr8             C 0 C 0
s calJac3.chr7             33714877  8 + 155834243 AC------------ACAC-TG
i calJac3.chr7             C 0 C 0
s saiBol1.JH378196          4071794  8 +   9144518 AC------------ACAT-TG
i saiBol1.JH378196         C 0 C 0
s otoGar3.GL873762          1570675  3 -   1847653 AT------------A------
i otoGar3.GL873762         C 0 C 0
s equCab2.chr29            10881249  8 +  33672925 AC------------ACAT-TG
i equCab2.chr29            C 0 C 0
s cerSim1.JH767738          9914015  8 +  34209287 AC------------ACAC-TG
i cerSim1.JH767738         I 5 C 0
s pteAle1.KB031146          3126576  6 -   3193751 --------------ATAT-TG
i pteAle1.KB031146         C 0 C 0
s myoLuc2.GL429990           245548 20 -   2104649 ACTATGAAAAACCAACTT-TG
i myoLuc2.GL429990         C 0 C 0
s loxAfr3.scaffold_15      39461611  9 -  55688157 AC------------ACACATG
i loxAfr3.scaffold_15      C 0 C 0
s triMan1.JH594766            27330  8 +   6345240 AC------------ACAT-TG
i triMan1.JH594766         C 0 C 0
e vicPac2.KB632521          1185663  0 -   7152218 C
e camFer1.KB018161            14523  0 -     34802 C
e orcOrc1.KB316915          2920956 333 -  11690531 I

a score=2584437.000000
s hg38.chr8_KI270814v1_alt   128827 373 +    141812 GGTTTTATTTGGGATTTTAAAATAGTTTCAGC-AGTAAGGTTCAAGAATAAATTATT-CCATCGCTTCACTACTTCTctgagca-----t---tttttc------aaatgctgtcttgtgaagtctttataataacctagttaaataaggcactacaagtctcacttt-t-agaggaagacattgagcctaagagaagcaac-----------------------ttaatcaagaacg-aa------ttggttgcagagctgagatt---TATTCTGAGTTGAGGACATTTTCCGTTACGTCAGCCTAACTCTAGTTCATTTACTGAGCTATATTGCCTTCAATTCATGAGTATTTCACCTT-AC----------TTTCTTCTTTAACTAAAAGTT---TAAG---AAGTTCACAGAG-CTC-ACAAATTTGAAGCCTATGAA
s panTro4.chr8             55031314 373 + 143986469 GGTTTTATTTGGGATTTTAAAATAGTTTCAGC-AGTAAGGTTCAAGAATAAATTATT-CCATCGCTTCACTACTTCTctgagca-----t---tttttc------aaatgctgtcttgtgaagtctttataataacctagttaaataaggcactacaagtctcacttt-t-agaggaagacattgagcctaagagaagcaac-----------------------ttaatcaagaacc-aa------ttggttgcagagctgagatt---TATTCTGAGTTGAGGACATTTTCCGTTATGTCAGCCTAACTCTAGTTCATTTACTGAGCTATATTGCCCTCAATTCATGAGTATTTCACCTT-AC----------TTTCTTCTTTAACTAAAAGTT---TAAG---AAGTTCACAGAG-CTC-ACAAATTTGAAGCCTATGAA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59171920 373 + 153482349 GGTTTTATTTGGGATTTTAAAATAATTTCAGC-AGTAAGGTTCAAGAATAAATTATT-CCATTGCTTCACTACTTCTctgagca-----t---tttttc------aaatgctgtcttgttaagtctttataatagcctagttaaataaggcactacaagtctcatttt-t-agaggaagacattgagcctaagaaaagcaac-----------------------atgatcaagaacc-aa------ttggttgcagagctaagatt---TATTCTGAGTTGAGGACATTTTCCGTTATGTCAACCTAACTCTAGTTCATTTACTGAGCTATATTGCCCTCAATTCATGAGTATTTCACCTT-AC----------TTTCTTCTTTAACTAAAAGTT---TAAG---AAGTTCACAGAG-CTC-ACAAATTTGAAGCCTATGAA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81387200 364 - 104879549 ----------GGACTTTTAAAATAGTTTCAGC-AATAAGGTTCAAGAACAAATTATT-TTTTTGCTTCACTATTTCTTTaagca---------ttttta------aaatgttatcttgttaaatctttataataacctagtgaaataaggccctaaaatcctcatttt-t-a---gaagacattgagtctaagagaagcaac-----------------------ttgttcaagaaaa-aatagccgttggtagccatgctaagact---GATTCTGAGTTAAGAACATTTT-CGATATGTCAAGCTAACTCTAGTTAATTTACTGAGTTATACTGCCCTCAATTCATGAGTGTTTTATCTT-TC----------TTTCTTCTTTAATTAGAAGCT---TAAT---AAGTTCATAGAG-CTT-AGAAACTTAAAGTCTATGGA
i nomLeu3.chr18            C 0 C 0
s rheMac3.chr8             61699037 373 + 150158102 GGTTTTATTTGGGATTTTAAAATAGTTTCAGC-AGTAAGTTTCAAGAATAAATTATT-CCATTGCTTCACTACTTCTctgagca-----t---tttttc------aaatgctatcttgttaagtctttataataccctagttaaataaggcactacaagtctcactct-t-agaggaagacattgagcctaagagaagcaac-----------------------ttgatcaagaacc-aa------ttggttgcagagctaagatt---TATTCTGAGTTGAGAACATTTTCCGTAATGTCAACCTAAATCTAGTTCATTTACTGAGCTATATTGCCCTCAATTCATGAATATTTCACCTT-AC----------TTTCTTCTTTAACTAAAAGTT---TAAG---AAGTTCATAGAG-CTC-ACAAATTCAAAGATTATGAA
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58372675 373 + 146850525 GGTTTTATTTGGGATTTTAAAATAGTTTCAGC-AGTAAGTTTCAAGAATAAATTATT-CCGTTGCTTCACTACTTCTctgagca-----t---tttttc------aaatgctatcttgttaagtctttataataccctagttaaataaggcactacaagtctcactct-t-agaggaagacattgagcctaagagaagcaac-----------------------ttgatcaagaacc-aa------ttggttgcagagctaagatt---TATTCTGAGTTGAGAACATTTTCCGTAATGTCAACCTAAATCTAGTTCATTTACTGAGCTATATTGCCCTCAATTCATGAATATTTCACCTT-AC----------TTTCTTCTTTAACTAAAAGTT---TAAG---AAGTTCATAGAG-CTC-ACAAATTCAAAGATTATGAA
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53294141 373 + 139301422 GATTTTATTTGAGATTTTAAAATAGTTTCAGC-AGTAAGTTTCAAGAATAAATTATT-CCATTGCTTCACTACTTCTctgagca-----t---tttttc------aaatgctgtcttgttaagtctttataataacctagttaaataaggcactatacatctcacttt-t-agaggaagacattgagcctaagagaagcaac-----------------------ttgatcaagaacc-aa------ttggttgcagagctaagatt---TATTCTGAGTTGAGAACATTTTCCATAATGCCAACCTAACTCTAATTCATTTACTGAGCTATATTGCCCTCAATTCATGAGTACTTCACCTT-AC----------TTTCTTCTTTAACTAAAAGTT---TAAG---AAGTTCATAGAG-CTC-ACAAATTCGAAGCCTATGAA
i chlSab2.chr8             C 0 C 0
s calJac3.chr7             33714885 374 + 155834243 GGTTTTACTGGGAATTTTAAA--AGTTTCAGC-AATAAAGTTCACGAACAAATTATT-TTATTGCTTCACTACTTCTTtgagca---------ctttaa------aactgttatcttgttaaatctttataacaacctagcacaaaaagactctaaaattttcatttt-t----agaagacattgagcctaagagaagaaac-----------------------ttgttcaagAAATAAATACCTGTTGGTTACTGCACTAGGAGC---TATTCTGAGTTAAGGACATTTTCCATTATGCCAAGCTAACTCTAGTTAATTGACTAAATTATACTGCCCTCAATTCATGAGTACTTCATCTT-TG----------TTTCTTCTTTTATTAGAAGCT---TAAT---AAGTTCATAGAC-CTT-ACAAACCTAAAGTCTATGGA
i calJac3.chr7             C 0 C 0
s saiBol1.JH378196          4071802 372 +   9144518 GACTTTATTTGCAGTTCCAAAATAGTTTCACC-AATAAAGTTCAAGAACAAATTATT-TCATTGCTTCACGatttttctgagca---------ttcaaa------acatgctatctcattaaatttttataagaacctagtgaaataagacagtaaaatcctcacttt-ttagaagaagacattgaacctaacaaaagcaac-----------------------ttacccaagaact-aatagcttttgactatagagctaggact---tgTTCTGAGTT-AGGACACTTTCCTTTATGTCAGGCTAATGCAAGTTAATGTACTGAAATAT----------ATTCACGGGTACTTCATGTTACT----------TTTTTTCTTTAATTAGAAGCT---TAATGAGAAGTTTGTAGAG-CTT-ACAAATGAGAAGTATATGGG
i saiBol1.JH378196         C 0 C 0
s otoGar3.GL873762          1570678 345 -   1847653 -ATTTT--------TGCTAAAATTATTTTAGC-AAAAATATTTTTAAA-AACTTACT-CCATTGCTTCACTATTTCTCTGGACA----------CTTTA------AAATGTAATCTTGTTAAATGTTCAAAACAACTTAGTGAAATAAGGCAGTAAAATTCTCA-----------GAAAACACTGAGCCTAAGAAAAGAAAA-----------------------TTGTCCAAGAACC-AGTAGTCGTTGCTTACAAAACT---------------------AGGACACCTTGCATCATGTCAAGCCAACTCTAGTTAATTTACTGAGCTGTACTGCCTTCAATTCATTACTATTTCAACTT-AC-----TTTTTTTTCTTTTTTAATTAGAAACT---TAAT---AAATTTGTAGAG-TTT-ACACATTTGAAGTGTATGGG
i otoGar3.GL873762         C 0 C 0
s vicPac2.KB632521          1185663 385 -   7152218 GGTTTTCTTTGGGATTCTCCAATAGTTCCAGC-ATTAAAGTTCAAGAACAAATTATT-CCACTCTTTCACTATTTCTctgagca-----t---tttggg------gtatattatctcattaaatcctcctaatactcttgtgaaataaggcagtaagattccagttttat-agaggaagactctgagctgaagagaagcaac-----------------------ttttccaggaaca-aatagctgttggttatagagcttgga------ttTCTGAGTTCCAGATACTTTCCA-TATGTCAGGCTAACTCTAGGTAATTTCCTGAGCTGTACTGTCCTCAGTTCATGACTGCTTCACCTT-AC-----TTTTTTTTCTTCTTTAATTACATGCTAAATAAA---AAGTTTGTAGAAGCTT-ACAAATTTGAAGAATTAAGG
i vicPac2.KB632521         C 0 C 0
s camFer1.KB018161            14523 385 -     34802 GGTTTTCTTTGGGATTCTCCAATAGTTCCAGC-ATTAAAGTTCAAGAACAAATTATT-CCACTCTTTCACTATTTCTctgagca-----t---tttggg------gtatattatctcattaaatcctcctaatactcttgtgaaacaaagcagtaagattccagttttat-agaggaagactctgagctgaagagaagcaac-----------------------atttccaggaaca-aatagctgttggttatagagcttgga------ttTCTGAGTTCCAGATACTTTCCA-TATGTCAGGCTAACTCTAGGTAATTTCCTGAGCTATACTGTCCTCAGTTCATGACTACTTCACCTT-AC-----TTTTTTTTCTCCTTTAATTACATGCTAAATAAA---AAGTTTGTAGAAGCTT-ACAAATTTGAAGAATTTAGG
i camFer1.KB018161         C 0 C 0
s equCab2.chr29            10881257 410 +  33672925 GGTTTTATTTGGAATTCCAACGTAGTTCCAAC-AGTAAATTTCAAGAA--------G-CCATTGGTTCACTATTGCTATGAGCA-----T--TTTTTGGAGGGAAGTATAGTATCTCCTCAAATGCTCCTAATGACCTTGTGAAATAAGGCAATAAGAGCCCTGCTTTGT-AGA-GAAGACTTTGAGCCAAAGAAAAGCAACAGGAACAGGAAAAGAAAGAAAATTTGTCCGGGAACA-AATAGCTGTTGGTTATGGGGCTAGAATT---TCTTCTGCATTCAAGACAGTTTCCCTTATGTCAGGCTAACTCTAGTTACTTTACTAAGCTATACTTCCCTCAATTCATGACTGCTTCACTTT-AC----TTTTTTTTTCCTCTTTAATTATGTGCTAAATAAA---AAGTTTATAGAA-CTT-ACAAATTTGAACTATATGGG
i equCab2.chr29            C 0 C 0
s cerSim1.JH767738          9914023 391 +  34209287 TGTTTTATTTGGAATTCGAACATAGTTCCAAC-AATAAAGTTTAAGGACAGATTATT-CCATTGCTTCATTATTGCTATGAGCA-----T--TTTTTGGGGAGAGGtatattatctccttaaatcctccaaacaaccttgtgaaataaggcaacaagatccttgttttat-agaggaaaactttgagccaaagaaaagtgac-----------------------ttgt-caggaaca-aatagctattggttatggagctagaa------cttctgagttcaagacagtttCTATTATGGCACACGAACTCTAGTTACTTTACAGAGTTATACTGCCCTCAATTCAGGACTGCTTCACCTT-AC-----TTCTCTTTCCTATTTAATTACTTGCTAAATAAA---AAGTTTGTAGAA-CTT-ATAGATTTGAAGTATATGGG
i cerSim1.JH767738         C 0 C 0
s pteAle1.KB031146          3126582 391 -   3193751 GGATTTGTTTGGGATTCCAAAATAGTTTTAACAAATAAAGGCCAAAAACAACTTATT-CCATTGCCTTTTTGTTTCTATGAGCA-----T--CTTTTTG------Gtgtattatctcctttaatcctcctcataaccttgtaaaacaaggcagtaggattcctcttttat-agaggaggactttgagccacagagaagtgac-----------------------ttgtctgagagca-aatagctgttggttatagaggaagga------cttctgagttcaagACACTTGCCATTAAGTTAAGCTAACTCTAATTAATTGACTGAACTCTACTTTCCTCAATTTCGGAGTGGTTAACCCT-ACCCTTACTTTTTTTTCTCTTTAATCACATGCTTGATAAA---AAGTTTGTAGAA-CTT-ACAAA-TTGAATCGTTTGGA
i pteAle1.KB031146         C 0 C 0
s myoLuc2.GL429990           245568 378 -   2104649 GGGTTTATTTGGGATTCCAAAATAGTTTCAACAAATAAAGTTCATGAACAGATT-TT-CTTTTGTCTTACTGTTTCTCTGAGCA-----TCACTTTTTG------CTATGttatctcatttaatcatcctaacaaccttataaaataaggcagtaagatttttattttgt-a---gaggactttgagccaaagaaaagtgac-----------------------ttgtttgagaata-aatagctgttcattgtagaactagga------tGTCTGAGTTCAAGACACTTGCCATTATGTCAAGCTAACTCTAATTAACTGAACGATATGTAGTGCCCTCAAATCATGGCTGTTTCACGTT-AC-------------TTTTTAAAATTACATGCTTAATAAA---AAGTTTATAGAA-CTTAACAAATTTGAAGTGTATGGT
i myoLuc2.GL429990         C 0 C 0
s loxAfr3.scaffold_15      39461620 380 -  55688157 GATTTTGTTTGGGATTCCAAAATAGTTTCAGC-AATGAAGTTCAAGAACAAATTCTTATTCCCTATTCACTATTTCTCTGagca-----t---ttaaaa------aaataatatctcattaaatcttcataacaaccttatgaaacagggcagtaagttcactgttttac-agaacaggacattgagccctagagcagtgat-----------------------gtgtccaaaaaca-aatagcagtttgttacagagctaggact---gcttctgagttcaggatactttccattatgtcacgctaactcTAGTTCATTTACTGAGCTGTACTGCCCTCAATTCAGG--------ACCGT-AC----TTTTTTTTTTTTCTTTAATTAAATACCTCATAAG---AAGTTTGTAGAG-ATT-GCAGCTTTGAAGTATATG--
i loxAfr3.scaffold_15      C 0 C 0
s triMan1.JH594766            27338 382 +   6345240 GGTTTTATTTGGGTTTCCAGAAGAGTTTCAGC-AGTGAATTTCAAGAACAAATTATT----CCTATTcactgtttctctgaacatttttt---tttttt------taataatatctcattaagtcttcttaacaaccttatgaaagagggcagtaagttctctgttttat-agaacaggacattgagcctaagagcagtaac-----------------------atgtgcagaaaca-aagagctgtttgttacagagctagctccagagcttctgagttgaggatactttccattgtgtcacgctAACCCCAGTTAATTTACCAAGCTGTACTGCCCTCAATTCAGG--------ACGTC-AC------TTTTTTTTTTCTTCAATTAAGTGCCTCATAAA---AAGTTTGTAGAG-ATT-ACAGCTTTGAAGTATATG--
i triMan1.JH594766         C 0 C 0
e orcOrc1.KB316915          2920956 333 -  11690531 I

a score=703149.000000
s hg38.chr8_KI270814v1_alt   129200  87 +    141812 AT--GAGTAAAGTTCTCAGATTAGCTCTAATATTGTCTG--------------------G----------AATACTCTAATA--ATTTAACATATTCAGTAAAT-TTTTTC--ATATCAGTGTT
s panTro4.chr8             55031687  87 + 143986469 AT--GAGTAAAGTTCTCAGATTAGCTCTAATATTGTCTG--------------------G----------AATACTCTAATA--ATTTAACATATTCAGTAAAT-TTTTTC--ATATCAGTGTT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59172293  87 + 153482349 AT--GAGTAAAGTTCTGAGATTAGCTCTAATATTGTCTG--------------------G----------AATACTCTAATA--ATTTAACATATTCAGTAAAA-TTTTTC--ATATCAGTGTT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81387564  88 - 104879549 AA--AAGTAATGTTCTGATGTTAGCTCTAATATTGTCTG--------------------A----------AATACTCTAAGA--ACTTAATAAATTTGGTAAATGTTTTGC--ATATCAATGTT
i nomLeu3.chr18            C 0 C 0
s rheMac3.chr8             61699410  97 + 150158102 AT--GAGTAAAGTTCTGAGATTAGCTCTAATATTGTCTG--------------------GNNNNNNNNNNNNNNNNNNAATA--ATTTAACATATTTGGTAAAT-TTTTTC--ATATCAGTGTT
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58373048  87 + 146850525 AT--GAGTAAAGTTCTGAGATTAGCTCTAATATTGTCTG--------------------G----------AATACTCTAATA--ATTTAACATATTTGGTAAAT-TTTTTC--ATATCAGTGTT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53294514  83 + 139301422 AT--GAGTAAAGTTCTGAGATTGGCTCTAATATTGTCTG--------------------G----------AATACTC---TA--ATTTAACATATTTGGTAAA--TTTTTC--ATAGCAGTGTT
i chlSab2.chr8             C 0 C 0
s calJac3.chr7             33715259  89 + 155834243 AT--AAGTAATGTTCTGACATTAGCCCTGATATTTTCTG--------------------A----------AATACTCTAAGA--ACTTAATAAATGTGGTAAAT-GTTTTTTAATATCAGtgtt
i calJac3.chr7             C 0 I 1057
s saiBol1.JH378196          4072174  84 +   9144518 AT--AATTAAAGTTCTAAAATTA---CCAATATTATTTG--------------------A----------AATACTCTAAGA--ATTTAATATATTTGGTAATT-GTTTTT--ATATCAGTTTT
i saiBol1.JH378196         C 0 C 0
s otoGar3.GL873762          1571023  88 -   1847653 AT--AATTAAAATTCTGATATTAGCTCTGATAGTGTCTG--------------------A----------AATATTGTAAGA--GTTTAATGCATTTGGTAGATGTTTTTC--ATATCAGTATT
i otoGar3.GL873762         C 0 C 0
s vicPac2.KB632521          1186048  87 -   7152218 AC--AGTTGAAGTCTTGCTATTAGCTCTAATATTGTCTG--------------------A----------AATAATCTAAG---ATTTAATATATTTGGTAATTGCTTTTC--ATATTAGTATT
i vicPac2.KB632521         C 0 C 0
s camFer1.KB018161            14908  87 -     34802 AC--AGTTGAAGTCTTGCTATTAGCTCTAATATTGTCTG--------------------A----------AATAATCTAAG---ATTTAATATATTTGGTAATTGCTTTTC--ATATTAGTATT
i camFer1.KB018161         C 0 C 0
s orcOrc1.KB316915          2921289  88 -  11690531 AC--AATTGAAGTTTTGATAATAGCTCTGACATTGTCTG--------------------A----------AGTGATCTAAGA--ATTTAATATATTTGGTAATTGTTTTTC--ATATTAGTATT
i orcOrc1.KB316915         I 333 C 0
s equCab2.chr29            10881667  87 +  33672925 AT--AATT-AAATTTTGATATTAGCTCTGATATTTTCTG--------------------A----------GATACTCTAAGA--TTTTAATATATTTGGTGAATGTTTTTC--TTATCAGTATT
i equCab2.chr29            C 0 C 0
s cerSim1.JH767738          9914414  84 +  34209287 AT--A----AAGTTTTGATATTAGCTCTGATATTATCTG--------------------A----------AATACTCTAAGA--ATTTAATATATTTGGTGAACGTTTTTC--ATATCAGTATT
i cerSim1.JH767738         C 0 C 0
s pteAle1.KB031146          3126973  88 -   3193751 GT--AATTAAAGTATTAATATTACCTCTGATATCATCTG--------------------A----------AACACTCTAAAA--ATTTCATATATTTGGTAAATGTTTTTT--ATTTCAACATA
i pteAle1.KB031146         C 0 C 0
s myoLuc2.GL429990           245946  84 -   2104649 ATAAAATTAAAGTTTTAATATTAACTTTGATGTTATTTG--------------------A----------AATATTCTAAGA-------ATATATTTGG-AAAAAATTTTT--ATGTTAGTATT
i myoLuc2.GL429990         C 0 C 0
s loxAfr3.scaffold_15      39462000 107 -  55688157 ----GGATAAAGTTCTGA-GTTAGTGCTGATATTGTAtgaagtactctgaagtactctaa----------agtactctAAGATTATTTAATATACTTGGTAGATGTTCCTC--GCATCAATATT
i loxAfr3.scaffold_15      C 0 C 0
s triMan1.JH594766            27720  87 +   6345240 ----GGATAAAGTTCTGA-GTTAGCGCTAATATTGTATG--------------------A----------AGTACTCTAAGATTATTTGATATACTTGGTAAATGTTCCTC--ACATCAATATT
i triMan1.JH594766         C 0 C 0

a score=129843.000000
s hg38.chr8_KI270814v1_alt   129287 17 +    141812 AAAATAGTACTTTTATT
s panTro4.chr8             55031774 17 + 143986469 AAAATAGTACTTTTATT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59172380 17 + 153482349 AAAATAGTACTTTTATT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81387652 17 - 104879549 AAAATAATAATTTTATT
i nomLeu3.chr18            C 0 C 0
s rheMac3.chr8             61699507 17 + 150158102 AAAATAGTACTTTTATT
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58373135 17 + 146850525 AAAATAGTACTTTTATT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53294597 17 + 139301422 AAAATAGTACTTGTATT
i chlSab2.chr8             C 0 C 0
s saiBol1.JH378196          4072258 17 +   9144518 AAAATAGTAATTTTACT
i saiBol1.JH378196         C 0 C 0
s otoGar3.GL873762          1571111 17 -   1847653 CAAATAGTGATTTTATT
i otoGar3.GL873762         C 0 C 0
s vicPac2.KB632521          1186135 14 -   7152218 CGAGTAGTAA---TATT
i vicPac2.KB632521         C 0 C 0
s camFer1.KB018161            14995 14 -     34802 CGAGTAGTAA---TATT
i camFer1.KB018161         C 0 C 0
s orcOrc1.KB316915          2921377 17 -  11690531 AAAATAGTAATATTATT
i orcOrc1.KB316915         C 0 C 0
s equCab2.chr29            10881754 17 +  33672925 AAAATAGTAATATTATT
i equCab2.chr29            C 0 C 0
s cerSim1.JH767738          9914498 17 +  34209287 AAAATAGTAATATTATT
i cerSim1.JH767738         C 0 C 0
s pteAle1.KB031146          3127061 17 -   3193751 AAGATAGTAATGTTATT
i pteAle1.KB031146         C 0 C 0
s myoLuc2.GL429990           246030 17 -   2104649 AAGATAGTAATATTATT
i myoLuc2.GL429990         C 0 C 0
s loxAfr3.scaffold_15      39462107 14 -  55688157 AAAATAGTAATATT---
i loxAfr3.scaffold_15      C 0 C 0
s triMan1.JH594766            27807 14 +   6345240 AAAATAGTAATATT---
i triMan1.JH594766         C 0 C 0
e calJac3.chr7             33715348 1057 + 155834243 I

a score=26364.000000
s hg38.chr8_KI270814v1_alt   129304 10 +    141812 GATTGCATAT
s panTro4.chr8             55031791 10 + 143986469 GATTGCATAT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59172397 10 + 153482349 GATTGCATAT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81387669 10 - 104879549 TATTTCATTT
i nomLeu3.chr18            C 0 C 0
s rheMac3.chr8             61699524 10 + 150158102 GATTGCATAT
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58373152 10 + 146850525 GATTGCATAT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53294614 10 + 139301422 GATTGCATAT
i chlSab2.chr8             C 0 C 0
s saiBol1.JH378196          4072275 10 +   9144518 TATTGCATTT
i saiBol1.JH378196         C 0 C 0
s vicPac2.KB632521          1186149 10 -   7152218 TATCACACTT
i vicPac2.KB632521         C 0 C 0
s camFer1.KB018161            15009 10 -     34802 TATCACACTT
i camFer1.KB018161         C 0 C 0
s orcOrc1.KB316915          2921394 10 -  11690531 TATCACATTT
i orcOrc1.KB316915         C 0 C 0
s equCab2.chr29            10881771 10 +  33672925 TATCACATTT
i equCab2.chr29            C 0 C 0
s cerSim1.JH767738          9914515 10 +  34209287 TATCACATTT
i cerSim1.JH767738         C 0 C 0
s pteAle1.KB031146          3127078  7 -   3193751 TATCACC---
i pteAle1.KB031146         C 0 C 0
s myoLuc2.GL429990           246047 10 -   2104649 TATCACCATT
i myoLuc2.GL429990         C 0 C 0
s loxAfr3.scaffold_15      39462121  3 -  55688157 TAT-------
i loxAfr3.scaffold_15      C 0 C 0
s triMan1.JH594766            27821  3 +   6345240 TAT-------
i triMan1.JH594766         C 0 C 0
e calJac3.chr7             33715348 1057 + 155834243 I
e otoGar3.GL873762          1571128  0 -   1847653 C

a score=16862.000000
s hg38.chr8_KI270814v1_alt   129314 2 +    141812 TT
s panTro4.chr8             55031801 2 + 143986469 TT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59172407 2 + 153482349 TT
i ponAbe2.chr8             C 0 C 0
s rheMac3.chr8             61699534 2 + 150158102 TT
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58373162 2 + 146850525 TT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53294624 2 + 139301422 TT
i chlSab2.chr8             C 0 C 0
s saiBol1.JH378196          4072285 2 +   9144518 TT
i saiBol1.JH378196         C 0 I 2
s vicPac2.KB632521          1186159 2 -   7152218 TT
i vicPac2.KB632521         C 0 I 3
s camFer1.KB018161            15019 2 -     34802 TT
i camFer1.KB018161         C 0 I 3
s orcOrc1.KB316915          2921404 2 -  11690531 TT
i orcOrc1.KB316915         C 0 I 2
s equCab2.chr29            10881781 2 +  33672925 TT
i equCab2.chr29            C 0 C 0
s cerSim1.JH767738          9914525 2 +  34209287 TT
i cerSim1.JH767738         C 0 C 0
s pteAle1.KB031146          3127085 1 -   3193751 -T
i pteAle1.KB031146         C 0 C 0
s myoLuc2.GL429990           246057 2 -   2104649 TT
i myoLuc2.GL429990         C 0 C 0
s loxAfr3.scaffold_15      39462124 2 -  55688157 CT
i loxAfr3.scaffold_15      C 0 C 0
s triMan1.JH594766            27824 2 +   6345240 CT
i triMan1.JH594766         C 0 C 0
e calJac3.chr7             33715348 1057 + 155834243 I
e nomLeu3.chr18            81387679 0 - 104879549 C
e otoGar3.GL873762          1571128 0 -   1847653 C

a score=2329.000000
s hg38.chr8_KI270814v1_alt   129316 1 +    141812 C
s panTro4.chr8             55031803 1 + 143986469 C
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59172409 1 + 153482349 C
i ponAbe2.chr8             C 0 C 0
s rheMac3.chr8             61699536 1 + 150158102 C
i rheMac3.chr8             C 0 I 4
s macFas5.chr8             58373164 1 + 146850525 C
i macFas5.chr8             C 0 I 1
s chlSab2.chr8             53294626 1 + 139301422 C
i chlSab2.chr8             C 0 I 1
s cerSim1.JH767738          9914527 1 +  34209287 T
i cerSim1.JH767738         C 0 C 0
s pteAle1.KB031146          3127086 1 -   3193751 T
i pteAle1.KB031146         C 0 C 0
s myoLuc2.GL429990           246059 1 -   2104649 T
i myoLuc2.GL429990         C 0 C 0
s loxAfr3.scaffold_15      39462126 1 -  55688157 C
i loxAfr3.scaffold_15      C 0 C 0
s triMan1.JH594766            27826 1 +   6345240 C
i triMan1.JH594766         C 0 C 0
e vicPac2.KB632521          1186161 3 -   7152218 I
e camFer1.KB018161            15021 3 -     34802 I
e calJac3.chr7             33715348 1057 + 155834243 I
e nomLeu3.chr18            81387679 0 - 104879549 C
e equCab2.chr29            10881783 0 +  33672925 C
e orcOrc1.KB316915          2921406 2 -  11690531 I
e otoGar3.GL873762          1571128 0 -   1847653 C
e saiBol1.JH378196          4072287 2 +   9144518 I

a score=-4064.000000
s hg38.chr8_KI270814v1_alt   129317 1 +    141812 -T
s panTro4.chr8             55031804 1 + 143986469 -T
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59172410 1 + 153482349 -T
i ponAbe2.chr8             C 0 C 0
s cerSim1.JH767738          9914528 1 +  34209287 -T
i cerSim1.JH767738         C 0 C 0
s pteAle1.KB031146          3127087 1 -   3193751 -T
i pteAle1.KB031146         C 0 C 0
s myoLuc2.GL429990           246060 1 -   2104649 -T
i myoLuc2.GL429990         C 0 C 0
s loxAfr3.scaffold_15      39462127 1 -  55688157 A-
i loxAfr3.scaffold_15      C 0 C 0
s triMan1.JH594766            27827 1 +   6345240 A-
i triMan1.JH594766         C 0 C 0
e vicPac2.KB632521          1186161 3 -   7152218 I
e camFer1.KB018161            15021 3 -     34802 I
e calJac3.chr7             33715348 1057 + 155834243 I
e nomLeu3.chr18            81387679 0 - 104879549 C
e equCab2.chr29            10881783 0 +  33672925 C
e orcOrc1.KB316915          2921406 2 -  11690531 I
e rheMac3.chr8             61699537 4 + 150158102 I
e macFas5.chr8             58373165 1 + 146850525 I
e otoGar3.GL873762          1571128 0 -   1847653 C
e saiBol1.JH378196          4072287 2 +   9144518 I
e chlSab2.chr8             53294627 1 + 139301422 I

a score=3395.000000
s hg38.chr8_KI270814v1_alt   129318 6 +    141812 T-TTTTT
s panTro4.chr8             55031805 6 + 143986469 T-TTTTT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59172411 7 + 153482349 TCTCTTT
i ponAbe2.chr8             C 0 C 0
s pteAle1.KB031146          3127088 6 -   3193751 T-TTATA
i pteAle1.KB031146         C 0 C 0
s myoLuc2.GL429990           246061 6 -   2104649 T-TTATA
i myoLuc2.GL429990         C 0 C 0
s loxAfr3.scaffold_15      39462128 6 -  55688157 T-TCTTT
i loxAfr3.scaffold_15      C 0 I 1
s triMan1.JH594766            27828 6 +   6345240 T-TTTTT
i triMan1.JH594766         C 0 I 1
e vicPac2.KB632521          1186161 3 -   7152218 I
e camFer1.KB018161            15021 3 -     34802 I
e calJac3.chr7             33715348 1057 + 155834243 I
e nomLeu3.chr18            81387679 0 - 104879549 C
e equCab2.chr29            10881783 0 +  33672925 C
e cerSim1.JH767738          9914529 0 +  34209287 C
e orcOrc1.KB316915          2921406 2 -  11690531 I
e rheMac3.chr8             61699537 4 + 150158102 I
e macFas5.chr8             58373165 1 + 146850525 I
e otoGar3.GL873762          1571128 0 -   1847653 C
e saiBol1.JH378196          4072287 2 +   9144518 I
e chlSab2.chr8             53294627 1 + 139301422 I

a score=4012.000000
s hg38.chr8_KI270814v1_alt   129324 6 +    141812 CTCAGC
s panTro4.chr8             55031811 6 + 143986469 CTCAGC
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59172418 6 + 153482349 TTCAGC
i ponAbe2.chr8             C 0 C 0
s pteAle1.KB031146          3127094 6 -   3193751 CACAGC
i pteAle1.KB031146         C 0 C 0
s myoLuc2.GL429990           246067 6 -   2104649 CACAGC
i myoLuc2.GL429990         C 0 I 72
e vicPac2.KB632521          1186161 3 -   7152218 I
e camFer1.KB018161            15021 3 -     34802 I
e calJac3.chr7             33715348 1057 + 155834243 I
e nomLeu3.chr18            81387679 0 - 104879549 C
e equCab2.chr29            10881783 0 +  33672925 C
e triMan1.JH594766            27834 1 +   6345240 I
e loxAfr3.scaffold_15      39462134 1 -  55688157 I
e cerSim1.JH767738          9914529 0 +  34209287 C
e orcOrc1.KB316915          2921406 2 -  11690531 I
e rheMac3.chr8             61699537 4 + 150158102 I
e macFas5.chr8             58373165 1 + 146850525 I
e otoGar3.GL873762          1571128 0 -   1847653 C
e saiBol1.JH378196          4072287 2 +   9144518 I
e chlSab2.chr8             53294627 1 + 139301422 I

a score=6046.000000
s hg38.chr8_KI270814v1_alt   129330 27 +    141812 CTTTTCACTGAA-ttttttttaattata
s panTro4.chr8             55031817 27 + 143986469 CTTTTCACTGAA-tttttttaaattata
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59172424 28 + 153482349 ATTTTCACTGAAtttttttttaattata
i ponAbe2.chr8             C 0 C 0
s pteAle1.KB031146          3127100 25 -   3193751 --AATTGCAAAC-TACCTTCTGATTATA
i pteAle1.KB031146         C 0 I 25
e myoLuc2.GL429990           246073 72 -   2104649 I
e vicPac2.KB632521          1186161  3 -   7152218 I
e camFer1.KB018161            15021  3 -     34802 I
e calJac3.chr7             33715348 1057 + 155834243 I
e nomLeu3.chr18            81387679  0 - 104879549 C
e equCab2.chr29            10881783  0 +  33672925 C
e triMan1.JH594766            27834  1 +   6345240 I
e loxAfr3.scaffold_15      39462134  1 -  55688157 I
e cerSim1.JH767738          9914529  0 +  34209287 C
e orcOrc1.KB316915          2921406  2 -  11690531 I
e rheMac3.chr8             61699537  4 + 150158102 I
e macFas5.chr8             58373165  1 + 146850525 I
e otoGar3.GL873762          1571128  0 -   1847653 C
e saiBol1.JH378196          4072287  2 +   9144518 I
e chlSab2.chr8             53294627  1 + 139301422 I

a score=867121.000000
s hg38.chr8_KI270814v1_alt   129357 3339 +    141812 ctttaagttttagggtacatgtgcacaacatgcacgtttgttacatatgtatacatgtgccatgttggtgtgctgcacccattaactcgtcatttaacattagatatgtctcttaatgctatccctcccccctcccccgaccccacaacaggccccggtgtgtgatgttccccttcctgtgtccatgtgttctcattgttcagttcccacctatgagtgacaacatgcggtgtttggttttttgtccttgtgatagtttgctgagaatgatgatttccagcttcatccatgtccctacaaaggacatgaactcatccttttttatggctgcatagtattccatggtgtatatgtgccacattttcttaatccagtctatcattgttggacatttgggttggttccaagtctttgctattgtgaatagtgccacaataaacatacgtgtgcatgtgtctttatagcagcatgatttataatcctttgggtttatacccagtaatgggatggctgggtcaaatggtatttctagttctagatccctgaggaatcgccacactgacttccacgatggttgaactagtttgcagtcccaccaacagtgtaaaagcgttcctatttctccacatcctctccagcacctgctgtttcctaactttttaatgatcgccattctaactggtgtgagatggtatcacattgtggttttcatttacatttctctgatggccagtgacgatgagcattttttcatgtgtcttttggctgcataaatgtctacttttgagaagtgtctgttcatatccttcgcccacttgttgatggggttgtttgtttttttcttgtaaatttgttggagttcactatagattctggatattagccctttgtcagatgagtaggttgcaaaaattttctcccattctgcaggctgcctgttcactctgatggtagtttcttttgctgcgcagaagctctttagtttaattagatcccatttgtcaattttggcttttgttgccattgcttttggtgttttagacatgaagtccttgtccatgcctatgtcctgaatggtattgcctaggttttcttctagggtttttatggtttcaggtctaacatttgagcctttaatccatcttgaattaatttttgtataaggtgtaaggaagggatccagtttcagctttctacatatggctagccagttttctcagcaccatttattaaatagggaatcctttccccattgcttgtttttgtcaggtttgtcaaagatcaggtagttgtcgacatgtggcattatttctgagggctctgttctgttccattggtctatatctctgttttggtaccagtaccttgctgttttggttactgtagccttgtagtatagtttgaagtcaggtagtgtgatgcctccagctttgttcttttggcttaggattgacttggcaatgcgagctcttttttggttccatatgagcttgaaagtagttttttccaattctgtgaagaaagtcattggtagcttgatagagatggcattgaatctataaattaccttgggcagtatggccattttcacgatattgattcttcctacccatgagcatggaatgttcttcca-tttgtttgtatcctcttttattttcttgagcagtagtttgtagttctccttgaagaggtccctcacatcccttgtaaattggaatcctaggtattttactctctttgaagcaattgtgaatgggagttcactcatgatttggctctctgtctgtctgttattggtgtataagaaagctcgtgatttttgcacattgatttcgtattctgagactttgctgaagttgcctatcagcttaaggagattttgggctgagacgatggggttttctagatatactatcatgtcatcttcaaacagggacaatttgacttcctcttttcttaattgaatgccctttatttccttctcctgcctgatttccctggccagaacttccaacactatgttgaataggagtggtgagagaggacatccctgtcttctgccagttttcaaagggaatgcttccaatttttgcccattaggtatgatattggctgtgggtttgtcatagatagctcttattattttgagatgcattccatcaatacctaatttattgagagtttttagcatgaagggtggttgaattttgtcaaaggcctcttctgcatctattgagataatcacgtggtttttgtctttggttctgtttatatgctggattgcctttattgattttcgtatgttgaaccagccttgcatcccagggatgaagcccacttgatcatggtggataagctttttgatg---tgctggattcggtttgccagtattttatcgaggatttttgcatcaatgttcatcaaggatattggtctaaaattctctttttttgttgtgtctctgccaggctttggtatcaggatgatgctagcctcataaaatgagttagggaggattccttc-tttttctattgattggaatagtttcagaaggaatggtaccagctcctccttgtacctctggtagaatttggctgtgaatccatctggtcctgggcttttttggttggtaagct----attattgcctcaatttcagagcctgttattggtctattcagggattcagcttcttcctggtttagtgttgggagggtgtatgtgtcaaggaatttatccatttcttctaggttttctagtttatttgcatagaggtgtttatagtattctctgatggtagtttgtatttctgtgggatcggtggtgatatcccctttatcattttttattgcatctatttgattcttctctcttttcttctttattagtcttgctagtggtctatcaattttgttgatcttttc--aaaaaccaggtcctggattcattgattttttgaaggg-ttttttatgtctctatttccttcagttctgctctgatcttagttatttcttgccttctgctagcttttgaatgtgtttgctcttgcttctctagttcttttaattgtgatgttagggggtcaattttagatctttcctgctttctcttgtgggcatttagtgctataaatttccctctacacactgctttaaatgtttcccagagattctggtatgttgtgtctttgttctcattggtttcaaagaacatctttgtttctgccttca--------------------tttcgttgtgtacccagtagtcattcaggagcagattgttcagtttccacgtagttgaatggttttaagtgagtttcttaatcctgagttctagtttgatttcactgtggtctgaga
s panTro4.chr8             55031844 3341 + 143986469 ctttaagttttagggtacatgtgcacaacgtgcacatttgttacatatgtatacatgtgccatgttggtgtgctgcacccattaactcgtcatttaacattagatatgtctcttaatgctatccctcccccctccccccaccccacaacaggccccggtgtgtgatgttccccttcctgtgtccatgtgatctcattgttcagttcccacctatgagtgacaacatgcggtgtttggttttttgtccttgtgatagtttgctgagaatgatgatttccagcttcatccatgtccctacaaaggacatgaactcatcattttttatggctgcatagtattccatggtgtatatgtgccacattttcttaatccagtctatcattgttggacatttgggttgcttccaagtctttgctattgtgaatagtgccacaataaacatacgtgtgcatgtgtctttatagcagcatgatttataatcctttgggtttatacccagtaatgggatggctgggtcaaatggtatttctagttctagatccctgaggaatcgccacactgacttccacgatggttgaactagtttgcagtcccaccaacagtgtaaaagcgttcctatttctccacatcctctccagcacctgttgtttcctaactttttaatgatcaccattctaactggtgtgagatggtatctcattgtggttttcatttacatttctctgatggccagtgatgatgagtatattttcatgtgtcttttggctgcataaatgtctacttttgagaagtgtctgttcatatcctttgcccacttgttgatggggttgtttgtttttttcttgtaaatttgtttgagttcactatagattctggatattagccctttgtcagatgagtagattgcaaaaattttctcccattctgtaggctgcctgttcactctgatggtagtttcttttgctgtgcagaagctctttagtttaattagatcccatttgtcaattttggcttttgttgccattgcttttggtgttttagacatgaagtccttgtccatgcctatggcctgaatggtattgcctaggttttcttctacggtttttatggtttcaggtctaacatttgagcctttaatccatcttgaattaatttttgtataaggtgtaaggaagggatccagtttcagctttctacatatggctagccagttttctcagcaccatttagtaaatagggaatcctttccccattgcttgtttttgtcaggtttgtcaaagatcagatagttgtagattcacggcattatttctgagggctctgttctgttccattgatctatatctctgttttggtaccagtatcatgctgttttggttactgtagccttgtagtatagtttgacatcaggtagtgttttgcctccagctttgttcttttggcttaggattgacttggcaatgcgggttcttttttggttccatatgagcttgaaagtagttttttccaattctgtgaagaaagtctttggtagcttgatggagatggcattgaatctataaattaccttgggcagtatggcaattttcacgatattgattcttcctacccttgagcatggaatgttcttcca-tttgtttgtatcctcttttatttccttgagcagtagtttgtagttctccttgaagaggtccctcacatcccttgtaaattggaatcctaggtattttattctctttgaagcaattgtgaatgggagttcactcatgatttggctctctgtctgtctgttattggtgtataagaatgcttgtgatttttgcacattgatttcgtattctgagactttgctgaagttgcctatcagcttaaggagattttgggctgagacgatggggttttctagatatattatcatgtcatcttcaaacagggacaatttgacttcctcttttcttaattgaatgccctttatttccttctcctgcctgatttccctggtcagaacttccaacactatgttgaataggagtggtgagagaggacatccctgtcttgtgccagttttcaaagggaatgcttccaatttttgcccattaggtatgatattggctgtgggtttgtcatagatagctcttattattttgagatacattccatcaatacctaatttattgagagtttttagcatgaa-ggttgttgaattttgttaaaggccttttctgcatctattgagataatcatgtggtttttgtctttggttctgtttatatgctggattgcctttattgattttcgtatgttgaaccagccttgcatcccagggatgaagcccacttgatcatggtggataagctttttgatgtgctgctggattcagtttgccagtattttatcgaggatttttgcatcaatgttcatcaaggatattggtctaaaattctctttttttgttgtgtctctgccaggctttggtatcaggatgatgctagcctcataaaatgagttagggaggattccttc-tttttctattgatcggaatagtttcagaaggaatggtaccagctcctccttgtacctctggtagaatttggctgtgaatccatctggtcctgggcttttttggttggtaagct----gttattgcctcaatttcagagcctgttattggtctattcagggattcagcttcttcctggtttagtgttgggagggtgtatgtgtcgaggaatttatccatttcttctaggttttctagtttatttgcatagaggtgtttatagtattctctgatggtagtttgtatttctgtgagatcggtggtgatctcccctttatcattttttattgcatctatttgattcttctctcttttcttctttattagtcttgctagtggtctatcaattttgttgatcttttc--aaaaaccaggtcctggattcattgattttttgaaggg-ttttttatgtctctatttccttcagttctgctctgatcttagttatttcttgccttctgctagcttttgaatgtgttttctcttgcttctctagttcttttaatcgtgatgttagggtgtcaattttaggtctttcctgctttctcttgtgggcatttagtgctataaatttccctctacacactgctttaaatgtttcccagagattctggtatgttgtgtctttgttctcattggtttcaaagaacatctttgtttctgccttca--------------------tttcgttgtgtacccagtagtcattcaggagcagattgttcagtttccacgtagttgaatggttttgagtgagtttcttaatcctgagttctagtttgatttcactgtggtctgaga
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59172452 3360 + 153482349 ctttaagttttagggtacatgtgcacaacgtgcaggtttgttacatatgtatacatgtgccatgttggtgtgctgcacccattaactcgtcatttaacattagatatatctcttaatgctatccctcccaccttctcccaccccacaacaggcccccatgtttgatgttccccttcctgtatccatgtgttctcattgttcaattcccacctatgagtgacaacatgcggtgtttggttttttgtccttgcaatagtttgctgagaatgatgatttctagcctcttccacatccctacaaaggacgtgaactcatcattttttatggctgcatagtattccatggtgtatatgtgccacattttcttaatctagtctatcattgttggacacttgggttggttccaagtcattgctattgtgaatagtgccacaatagacatacgtgtgcatgtgtctttataacagcatgatttataatcctttgggtgtatacccagtaatgggatggctgggtcaaatggtatttctagttctagatccctgaggaattgccacactgacttccacaatggttgaactagtttacagttccaccaacagtgtaaaagtgttcctatttctccacatcctctccagtacctgttgtttcctgactttttaatgattg-cattctaactggtgtgagatggtatctcattgtggttttcatttgcatttctctgatggccagtgatgatgagcattttttcatgtgtctgttggctgcataaatgttttcttttgagaagtgtctgttcatatccttcgcccacttgttgatgggg----ttgtttttttcttgtaaatttgtttgagttcactgtagattctgggtattagccctttgtcagatgagtagattgcaaacattttctcccactctgtaggctgcctgttcactctgatggtagtttctttttctgtgcagaagctctttagtttagttagatcctatttgtcaattttggcttttgttgccattgctttcggtgttttagacatgaagtctttgcccatgcctatgtcctgaatggtattgcctaggttttcttctagggtttttatggttttaggtctaacatttaagtctgtaatccatcttgaattaatttttgtataaggtgtaaggaagggatccagtttcagctttttacatatggctagccagttctcccagcaccatttattaaatagggaatcttttccccatttcttgtttttgtcaggtttgtcaaagatcagataggtgtagatacgtggcattatttctgagggctctgttctgttccactggcctatatctctgttttggtatcagtaggttgctgttttggttactgtatccatgtagtataatttgaagtcaggtagcctgatgcctccagctttgttcttttggcttaggattgacttggaaatgcaggatcttttttggtttcatatgaacttgaaagtaatttttttcaattctgtgaagaaagtcattggtagcttgatggggatggcattgaatctataaattaacttgggcagtatggccattttcatgatattgtttcttcctacccatgagcatggaatgttcttccattttttttgtatcctcttttatttcattgagcagtggtttgtagttctccttgaagaggtccttcacatcccttgtaagttggattcctaggtattttattctctttgaagcaattgtgaatgggagttcactcatgatttggctc----tctgtctgttattggtgtataagaatgcttgtgatttttgcacattgattttgtatcctgagactttgctgaagttgcttatcagcttaaggagattttgggctgagacaatggggttttccagatatacaatcatgtcatctgcaaacagggacaatttgacttcctcttttcctaattgaatacccttcatttccttctcctgcctgattgccctggccagaacttccaacactatgttgaataggagtggtgagagagtgcatccctgtcttgtgccagttttcaaagggaatgcttccagtttttgcccattcagtatgatattggctgtgggtttgtcatagatagctcttattattttgagatacgtcccatcaatacctaatttattgagagtttttagcatgaagtgttgttgaattttatcaaaggccttttctgcatctattgagataatcatgtggtttttgtctttggttctgtttatatgctggattacatttattgatttgcatatgttgaaccagccttgcatcccagggatgaagcccacttgatcatggcggataagctttttgatgtgctgctggattcggtctgctagtattttattgaggatttttgcattgatgttcatcagggatattgggctaaaattctctttttttgttgtg--tctgccaggctttggtatcaggatgatggtggcctcataaaatgagttagggaggattccctcttttttctattgattggaatggtttcagaaggaatggtaccagctcctccttgtatctttggtagaatttggctgtgaatccatctggtcctgggcttttttggttggtaagctattaattattgcctcaatttcagaacctgttattggtctattcagagattcaacttcttcctggtttagtcttgggagagtgtatgtgtcaaggaatttatccatttcttctagattttctagtttatttgcgtagaggtgtttatagtattctctgatggtagtttgtatttctgtgggatcggtggtgatatcccctttatcattttttattgcgtctatttgattcttctctcttttcttctttattagtcttgctagcagtctctcaattttgttgatcttttcaaaaaaaccagctcctggattcattgattttttgaaaggtttttttatgtctctatttccttcagttctgctctgatcttagttatttcttgccttctgctagcttttgcatgtgtttgctcttgcttctctagttcttttaattgtgatgttagggtgtcaattttagatctttcctgctttctcttgtgagcatttagtgctatgaatttccctccacaccctgctttgaatgtgtcccagagattctggtatgttgtgtctttgttctcattggtttcaaagaacatctttatttctgccttcatttctttatttctgccttcgtttctttatgtacccagtagtcattcaggagcagattgttcagtttccatgtagttgagtggttttgagtgaatttcttaatcctgagttctagtttgatttcaccatggtctgagg
i ponAbe2.chr8             C 0 C 0
e myoLuc2.GL429990           246073   72 -   2104649 I
e vicPac2.KB632521          1186161    3 -   7152218 I
e camFer1.KB018161            15021    3 -     34802 I
e calJac3.chr7             33715348 1057 + 155834243 I
e nomLeu3.chr18            81387679    0 - 104879549 C
e equCab2.chr29            10881783    0 +  33672925 C
e triMan1.JH594766            27834    1 +   6345240 I
e loxAfr3.scaffold_15      39462134    1 -  55688157 I
e pteAle1.KB031146          3127125   25 -   3193751 I
e cerSim1.JH767738          9914529    0 +  34209287 C
e orcOrc1.KB316915          2921406    2 -  11690531 I
e rheMac3.chr8             61699537    4 + 150158102 I
e macFas5.chr8             58373165    1 + 146850525 I
e otoGar3.GL873762          1571128    0 -   1847653 C
e saiBol1.JH378196          4072287    2 +   9144518 I
e chlSab2.chr8             53294627    1 + 139301422 I

a score=1857.000000
s hg38.chr8_KI270814v1_alt   132696 5 +    141812 gacag
s panTro4.chr8             55035185 5 + 143986469 gacag
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59175812 5 + 153482349 gacag
i ponAbe2.chr8             C 0 C 0
s otoGar3.GL873762          1571128 5 -   1847653 AACAT
i otoGar3.GL873762         C 0 C 0
e myoLuc2.GL429990           246073 72 -   2104649 I
e vicPac2.KB632521          1186161 3 -   7152218 I
e camFer1.KB018161            15021 3 -     34802 I
e calJac3.chr7             33715348 1057 + 155834243 I
e nomLeu3.chr18            81387679 0 - 104879549 C
e equCab2.chr29            10881783 0 +  33672925 C
e triMan1.JH594766            27834 1 +   6345240 I
e loxAfr3.scaffold_15      39462134 1 -  55688157 I
e pteAle1.KB031146          3127125 25 -   3193751 I
e cerSim1.JH767738          9914529 0 +  34209287 C
e orcOrc1.KB316915          2921406 2 -  11690531 I
e rheMac3.chr8             61699537 4 + 150158102 I
e macFas5.chr8             58373165 1 + 146850525 I
e saiBol1.JH378196          4072287 2 +   9144518 I
e chlSab2.chr8             53294627 1 + 139301422 I

a score=4220.000000
s hg38.chr8_KI270814v1_alt   132701 3 +    141812 ttt
s panTro4.chr8             55035190 3 + 143986469 ttt
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59175817 3 + 153482349 ttt
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81387679 3 - 104879549 TTA
i nomLeu3.chr18            C 0 C 0
s calJac3.chr7             33716405 3 + 155834243 tta
i calJac3.chr7             I 1057 C 0
s otoGar3.GL873762          1571133 3 -   1847653 TTT
i otoGar3.GL873762         C 0 I 3
s equCab2.chr29            10881783 3 +  33672925 TTA
i equCab2.chr29            C 0 C 0
s cerSim1.JH767738          9914529 3 +  34209287 TTA
i cerSim1.JH767738         C 0 C 0
e myoLuc2.GL429990           246073 72 -   2104649 I
e vicPac2.KB632521          1186161 3 -   7152218 I
e camFer1.KB018161            15021 3 -     34802 I
e triMan1.JH594766            27834 1 +   6345240 I
e loxAfr3.scaffold_15      39462134 1 -  55688157 I
e pteAle1.KB031146          3127125 25 -   3193751 I
e orcOrc1.KB316915          2921406 2 -  11690531 I
e rheMac3.chr8             61699537 4 + 150158102 I
e macFas5.chr8             58373165 1 + 146850525 I
e saiBol1.JH378196          4072287 2 +   9144518 I
e chlSab2.chr8             53294627 1 + 139301422 I

a score=6392.000000
s hg38.chr8_KI270814v1_alt   132704 1 +    141812 T
s panTro4.chr8             55035193 1 + 143986469 T
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59175820 1 + 153482349 T
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81387682 1 - 104879549 T
i nomLeu3.chr18            C 0 C 0
s macFas5.chr8             58373166 1 + 146850525 T
i macFas5.chr8             I 1 C 0
s chlSab2.chr8             53294628 1 + 139301422 T
i chlSab2.chr8             I 1 C 0
s calJac3.chr7             33716408 1 + 155834243 t
i calJac3.chr7             C 0 C 0
s otoGar3.GL873762          1571139 1 -   1847653 T
i otoGar3.GL873762         I 3 C 0
s vicPac2.KB632521          1186164 1 -   7152218 T
i vicPac2.KB632521         I 3 C 0
s camFer1.KB018161            15024 1 -     34802 T
i camFer1.KB018161         I 3 C 0
s orcOrc1.KB316915          2921408 1 -  11690531 T
i orcOrc1.KB316915         I 2 C 0
s equCab2.chr29            10881786 1 +  33672925 C
i equCab2.chr29            C 0 C 0
s cerSim1.JH767738          9914532 1 +  34209287 C
i cerSim1.JH767738         C 0 C 0
s loxAfr3.scaffold_15      39462135 1 -  55688157 T
i loxAfr3.scaffold_15      I 1 C 0
s triMan1.JH594766            27835 1 +   6345240 T
i triMan1.JH594766         I 1 C 0
e myoLuc2.GL429990           246073 72 -   2104649 I
e pteAle1.KB031146          3127125 25 -   3193751 I
e rheMac3.chr8             61699537 4 + 150158102 I
e saiBol1.JH378196          4072287 2 +   9144518 I

a score=19243.000000
s hg38.chr8_KI270814v1_alt   132705 2 +    141812 AC
s panTro4.chr8             55035194 2 + 143986469 AC
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59175821 2 + 153482349 AC
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81387683 2 - 104879549 AC
i nomLeu3.chr18            C 0 C 0
s macFas5.chr8             58373167 2 + 146850525 AT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53294629 2 + 139301422 AC
i chlSab2.chr8             C 0 C 0
s calJac3.chr7             33716409 2 + 155834243 aC
i calJac3.chr7             C 0 C 0
s saiBol1.JH378196          4072289 2 +   9144518 AC
i saiBol1.JH378196         I 2 C 0
s otoGar3.GL873762          1571140 2 -   1847653 AC
i otoGar3.GL873762         C 0 C 0
s vicPac2.KB632521          1186165 2 -   7152218 AC
i vicPac2.KB632521         C 0 C 0
s camFer1.KB018161            15025 2 -     34802 AC
i camFer1.KB018161         C 0 C 0
s orcOrc1.KB316915          2921409 2 -  11690531 AC
i orcOrc1.KB316915         C 0 C 0
s equCab2.chr29            10881787 2 +  33672925 AC
i equCab2.chr29            C 0 C 0
s cerSim1.JH767738          9914533 2 +  34209287 AC
i cerSim1.JH767738         C 0 C 0
s loxAfr3.scaffold_15      39462136 2 -  55688157 AT
i loxAfr3.scaffold_15      C 0 C 0
s triMan1.JH594766            27836 2 +   6345240 AC
i triMan1.JH594766         C 0 C 0
e myoLuc2.GL429990           246073 72 -   2104649 I
e pteAle1.KB031146          3127125 25 -   3193751 I
e rheMac3.chr8             61699537 4 + 150158102 I

a score=274273.000000
s hg38.chr8_KI270814v1_alt   132707 45 +    141812 ATAGTATTCACCAACAACTTTTGGAATAT----AA-------------------------AATATGTCTAAACA
s panTro4.chr8             55035196 45 + 143986469 ATAGTATTCACCAACAACTTTTGGAATAT----AA-------------------------AATATGTCTAAACA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59175823 45 + 153482349 ATAACATTCACCCACAACTTTTGGAATTT----AA-------------------------AATATGTCTAAAAA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81387685 49 - 104879549 ATAGCATTCATCAACAACTTTTGGAATATAAACAA-------------------------AAGATAACTAAAAA
i nomLeu3.chr18            C 0 C 0
s rheMac3.chr8             61699541 45 + 150158102 ATAGCATTCACCAACAACTTTTGGAATAT----AA-------------------------AATATGTCTAAAAA
i rheMac3.chr8             I 4 C 0
s macFas5.chr8             58373169 45 + 146850525 ATAGCATTCACCAACAACTTTTGGAATAT----AA-------------------------AATATGTCTAAAAA
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53294631 45 + 139301422 ATAGCATTCACAAACAACTTTTGGAATAT----AA-------------------------AATATGTCTAAAAA
i chlSab2.chr8             C 0 C 0
s calJac3.chr7             33716411 49 + 155834243 ATAGAATTCTTGAACAACTTTTGGATTAT----AAACAA---------------------AAGACATCCAAATA
i calJac3.chr7             C 0 C 0
s saiBol1.JH378196          4072291 52 +   9144518 ATAGCATTTACCAAGTAATGTCTGAATAC----AAAGAA------------------AATAAGACAGCTGGAAA
i saiBol1.JH378196         C 0 C 0
s otoGar3.GL873762          1571142 70 -   1847653 ATAGCATTTACAAACAAATTTCAGAATAT----GAAAAAGGAAAGATACTAAATGGCAATAAGACCTGCAAAAA
i otoGar3.GL873762         C 0 I 3
s vicPac2.KB632521          1186167 52 -   7152218 ATAGCAATCACCAACTGATTTCCAAATAC----AAAGAAGAA------------------AAGAGACCTAAAAC
i vicPac2.KB632521         C 0 I 3
s camFer1.KB018161            15027 52 -     34802 ATAGCAATCACCAACTGATTTCCAAATAC----AAAGAAGAA------------------AAGAGACCTAAAAC
i camFer1.KB018161         C 0 I 3
s orcOrc1.KB316915          2921411 52 -  11690531 ATAGCAATCGCCAACTGATTTCTGAATAT----AAAGAAGAA------------------AAGAGACCTAAAAC
i orcOrc1.KB316915         C 0 I 3
s equCab2.chr29            10881789 52 +  33672925 ATAGCAATCGCCAACTAATTTCTGAACAT----AAAGAAGAA------------------AAGAGACCTAAAAC
i equCab2.chr29            C 0 I 3
s cerSim1.JH767738          9914535 52 +  34209287 ATAGCAATTGCCAACTAATTTCTGAATAT----AAAGAAGAA------------------AAGAGACCTAAAAC
i cerSim1.JH767738         C 0 I 3
s loxAfr3.scaffold_15      39462138 52 -  55688157 GTAGCAATCGCAAACTAATTTCTGAGTAT----AAAGAAGAA------------------AAGAGACCTAAAAA
i loxAfr3.scaffold_15      C 0 I 3
s triMan1.JH594766            27838 52 +   6345240 ATAGCAATCGCCAACTAATTTCTGAGTAT----AAAGAAGAA------------------AAGAGACCTAAAAA
i triMan1.JH594766         C 0 I 3
e myoLuc2.GL429990           246073 72 -   2104649 I
e pteAle1.KB031146          3127125 25 -   3193751 I

a score=204547.000000
s hg38.chr8_KI270814v1_alt   132752 19 +    141812 TCCTCAAAATTTCAACCCA
s panTro4.chr8             55035241 19 + 143986469 TCCTCAAAATTTCAACCCA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59175868 19 + 153482349 TCCTCAAAATTTCAACCCA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81387734 19 - 104879549 TTCTCAAAATAGCAATCCA
i nomLeu3.chr18            C 0 C 0
s rheMac3.chr8             61699586 19 + 150158102 TCCTCAAAATTTCAACCCA
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58373214 19 + 146850525 TCCTCAAAATTTCAACCCA
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53294676 19 + 139301422 TCCTCAAAATTTCAACCCA
i chlSab2.chr8             C 0 C 0
s calJac3.chr7             33716460 19 + 155834243 TCCTCAAAATAGCAATCCA
i calJac3.chr7             C 0 C 0
s saiBol1.JH378196          4072343 19 +   9144518 TCCTCAAAATAGCAATCCA
i saiBol1.JH378196         C 0 C 0
s otoGar3.GL873762          1571215 19 -   1847653 TTCTCAAAGTAGCAACTCA
i otoGar3.GL873762         I 3 C 0
s vicPac2.KB632521          1186222 19 -   7152218 TTCTCAAAATAGCAACCCA
i vicPac2.KB632521         I 3 C 0
s camFer1.KB018161            15082 19 -     34802 TTCTCAAAATAGCAACCCA
i camFer1.KB018161         I 3 C 0
s orcOrc1.KB316915          2921466 19 -  11690531 TTCTCAAAATAGCAACCCA
i orcOrc1.KB316915         I 3 C 0
s equCab2.chr29            10881844 19 +  33672925 TTCACAAAATAGCAATCCA
i equCab2.chr29            I 3 C 0
s cerSim1.JH767738          9914590 19 +  34209287 TTCTCAAAATAGCAATCCA
i cerSim1.JH767738         I 3 C 0
s pteAle1.KB031146          3127150 19 -   3193751 TTCCCAGAATAGCAATCTA
i pteAle1.KB031146         I 25 C 0
s loxAfr3.scaffold_15      39462193 19 -  55688157 TTCTCAAAATAACAACCTA
i loxAfr3.scaffold_15      I 3 C 0
s triMan1.JH594766            27893 19 +   6345240 TTCTCAAAATAACAATCCA
i triMan1.JH594766         I 3 C 0
e myoLuc2.GL429990           246073 72 -   2104649 I

a score=512611.000000
s hg38.chr8_KI270814v1_alt   132771  99 +    141812 GGTAAGACTTCTGACAGTAA-ACTACTCTTTGTG---------------------ACACTACC-------------ATAATATTATGGAAGTTTTGATCACAAAAGAGCAA-TT--------------AA-A------A--ATGT----------------------------------------------------------------------ATAAATAGC--ATGT
s panTro4.chr8             55035260  99 + 143986469 GGTAAGACTTCTGACAGTAA-ACTACTCTTTGTG---------------------ACACTACC-------------ATAATATTATGGAAGTTTTGATCACAGAAGAGCAA-TT--------------AA-A------A--ATGT----------------------------------------------------------------------ATAAATAGC--ATGT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59175887  98 + 153482349 GGTGAGACTTCTGACAGTAA-ACTACTCTTTGTG---------------------AC-CTAAC-------------ATAAGATTATGGAAGTTATGATCACAAAAGAGCAA-TT--------------AA-A------A--ATGT----------------------------------------------------------------------ATAACTAGC--ATGC
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81387753 104 - 104879549 GGTAATACCTCTGATAATAA-ACTACTCTTGGTG---------------------GTGCTACC-------------ATAAGATTACAGGAGTGTTGATCACAAAAGAGCTA-TT--------------AA-AAAAG-CA--ATGC----------------------------------------------------------------------GTAAGTAGC--ATGT
i nomLeu3.chr18            C 0 C 0
s rheMac3.chr8             61699605 101 + 150158102 GGTAAGACTTCTGATAGTAA-ACTACTCTTTGTG---------------------ACACTACC-------------ATAAGATTATGGAAGATTTAATCACAAAAGAGCAA-TT--------------AA-A------A--ATGT----------------------------------------------------------------------ATAAATAACTTGTGT
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58373233 101 + 146850525 GGTAAGACTTCTGACAGTAA-ACTACTCTTTGTG---------------------ACACTACC-------------ATAAGATTATGGAAGATTTAATCACAAAAGAGCAA-TT--------------AA-A------A--ATGT----------------------------------------------------------------------ATAAATAACTTGTGT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53294695 100 + 139301422 GGTAAGACTTCTGACAGTGA-ACTACTCTTTGTG---------------------ACACTACC-------------ATAAGATTATGGAAGTTTTTATCACAAAAGAGCAA-TT---------------A-A------A--ATGT----------------------------------------------------------------------ATAAATAGCTTTTGT
i chlSab2.chr8             C 0 C 0
s calJac3.chr7             33716479 104 + 155834243 GGTAAGACTTCTGATATTAA-ACTACTCTTTGTG---------------------GTACCACC-------------ATAAGATTATGGAAGTTTTGATAACAAAAGAGCAA-TT--------------AA-AAAAG-AA--ATGT----------------------------------------------------------------------ATAAATAGC--ATGT
i calJac3.chr7             C 0 C 0
s saiBol1.JH378196          4072362 115 +   9144518 GGTAAGACATCCA--GGTAA-ATTACTCTTGGTG---------------------GTCTTACCATAGATTAA-CAAATAAGAGTAAGGAAGTTTTAATTACCAAAGAGCAGCTT--------------AA-AAACT-CA--CTAT----------------------------------------------------------------------GTAAATTGC--ATAT
i saiBol1.JH378196         C 0 C 0
s otoGar3.GL873762          1571234 109 -   1847653 GGTAAGAATTCTGATAATGA-ATAAGTCTTGGTG---------------------ATTTTACCCTAGATTAC-AAAATAAGATCAAGGAATTTTTGATCACAAAAGAGCAG-TT--------------AA-A------A--A--A----------------------------------------------------------------------AAAAACAAC--ATGg
i otoGar3.GL873762         C 0 C 0
s vicPac2.KB632521          1186241 139 -   7152218 GGTAAGGCTTCTGATAGTAA-ATTACTCTTGGTGGTAATCCAAGTTAGGGGTCCTAGCCTACCATTGATAAAGAAAGTAAGAGAGAGGAAGTTTTGATAATGAAAGAGTGG-TG--------------AA-AAAAACCA--GTGT----------------------------------------------------------------------GTAAATTTC--ATGT
i vicPac2.KB632521         C 0 C 0
s camFer1.KB018161            15101 139 -     34802 GGTAAGGCTTCTGATAGTAA-ATTACTCTTGGTGGTAATCCAAGTTAGGGGTCCTAGCCTACCATAGATAAAGAAAGTAAGAGAGAGGAAGTTTTGATAATGAAAGAGTGG-TG--------------AA-AAAAACCA--GTGT----------------------------------------------------------------------GTAAATTTC--ATGT
i camFer1.KB018161         C 0 C 0
s orcOrc1.KB316915          2921485 114 -  11690531 GGTAAGACGTCTGATAGTGA-ATTACTCTTGGTG---------------------ACCCTACCATAGAT----AAAGTAAGAGTGGGGAAGTTTTAATAATGAAAAAGCAA-TG--------------AA-AAAAACCA--GTGT----------------------------------------------------------------------GTAAACTGC--ATGT
i orcOrc1.KB316915         C 0 C 0
s equCab2.chr29            10881863 101 +  33672925 GGTAAGATTTCTGATAGTGA-ATTACTCTTGGTG---------------------GTTCTACCATAGGTAAAGAAAGGAAGAGTAAAGAAGCTTTGATAGTGAAAGAGCAA-TG--------------GA-AAAATCCA-------------------------------------------------------------------------------------------
i equCab2.chr29            C 0 C 0
s cerSim1.JH767738          9914609 102 +  34209287 GGTAAGACTTCTGATAGTGA-ATTACTCTGGGTG---------------------GTTCTACCATAGATAAAGAAAGGAAGAGGAAGGAAGTTTTGATAATGAAAGAGCAA-TGA-------------GA-AAAATCCA-------------------------------------------------------------------------------------------
i cerSim1.JH767738         C 0 C 0
s pteAle1.KB031146          3127169 113 -   3193751 GGTAAGACTTATAATCGTTA-CTTACTCT---TG---------------------GTCCTACCTTAGAT----AAAGTAAAAGAAAGGAGGTTTTGCAAATGAAAGAATAG-TG--------------GA-AAAAAGCACGGTGT----------------------------------------------------------------------GTAAAGTGC--ATGT
i pteAle1.KB031146         C 0 I 2717
s myoLuc2.GL429990           246145 200 -   2104649 GGTAAGACTTCTAATAGTGA-ATTATTCTTGGTG---------------------GTCCTACCATAGAT----AAAGTAAGAGCAAGGAAATTTTGATAATGAAAGAGCAG-TGAAAAAAAAACCCACAA-AAAAAACACAATGTAgccctaaccggtttggctcagtggatagagtgtcagcctgcggactcaagggtcccaggttcgattccggtcaagggc--atgt
i myoLuc2.GL429990         I 72 I 29
s loxAfr3.scaffold_15      39462212 102 -  55688157 GGTAAGACTTCTGGTAGTGCTGTTACT-TTGGTG---------------------CTCCTATTGTAGCTAAAGAAAGTAAGAGTAAGGAAGTTTTGATAATGAAACACCAG-TT--------------AAGAAAAATTA-------------------------------------------------------------------------------------------
i loxAfr3.scaffold_15      C 0 C 0
s triMan1.JH594766            27912  98 +   6345240 GGTAAGACTTCTGGTAATGGCATTATTCTTGGTG---------------------CTGCTATCATAG----ATAAAGTAAGAGTAAGGAAGTTTTGATAATGAATGAGCAA-TT--------------AA-AAAAATTA-------------------------------------------------------------------------------------------
i triMan1.JH594766         C 0 C 0

a score=-241067.000000
s hg38.chr8_KI270814v1_alt   132870  59 +    141812 G---------------------------------------GGTGT------------------------------------------------------------------------------------------Gtaaatttaaata-----------------tatatagac---a----tataaaaa---tTTCTTTGATTT------AATTTTTT---------------GC
s panTro4.chr8             55035359  59 + 143986469 G---------------------------------------GGTGT------------------------------------------------------------------------------------------Gtaaatttaaata-----------------tatatagat---a----tataaaaa---tttctttgattt------aatttttt---------------GC
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59175985  59 + 153482349 G---------------------------------------TGTGT------------------------------------------------------------------------------------------Gtaaatttaaata-----------------tatatagat---a----tttataaa---tttctttgattt------aatttttt---------------gt
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81387857  66 - 104879549 G---------------------------------------TTtac------------------------------------------------------------------------------------------atatatacctatatgt-----------gtttgtatatat---a----tatataca---taGCTTTGATTT------AATTTTTT--------------AGT
i nomLeu3.chr18            C 0 C 0
s rheMac3.chr8             61699706  57 + 150158102 G---------------------------------------TGTGt------------------------------------------------------------------------------------------atatatttaa---------------------atatagat---a----tatataaa---tttctttgattt------aattttttt-------------aGT
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58373334  57 + 146850525 G---------------------------------------TGTGt------------------------------------------------------------------------------------------atatatttaa---------------------atatagat---a----tatataaa---tTTCTTTGATTT------AATTTTTTT-------------AGT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53294795  61 + 139301422 G---------------------------------------TGTGT------------------------------------------------------------------------------------------Gtatatttaaata-----------------tatatagat---a----tatgtaaa---tTTCTTTGATTT------AATTTTTTT-------------ATT
i chlSab2.chr8             C 0 C 0
s calJac3.chr7             33716583  66 + 155834243 GTT---------------------------------tacatatat------------------------------------------------------------------------------------------acatatgtatgta-----------------tgcatatat---a----catatata---taGCTTCGGTTT------AACTTTTT--------------AAT
i calJac3.chr7             C 0 C 0
s saiBol1.JH378196          4072477  42 +   9144518 ----------------------------------------TATAC------------------------------------------------------------------------------------------ATATATGTATGTG-----------------TGT----------------TTTAAA---TTTCTT--------------CTTAGT--------------AGG
i saiBol1.JH378196         C 0 C 0
s otoGar3.GL873762          1571343 148 -   1847653 ggtagcacctgtggctcaaaggagtagggtgctgaccccatgtgc----------------------------------------------------------------------------------tggaggtggtaggttcaaacccagccctggccaaaaactgtaaagaa---aAAAGCATGTAAA---TTACTTATTTTTTACTAGAATATTTTTCTTTAAATTAAAGAGT
i otoGar3.GL873762         C 0 C 0
s vicPac2.KB632521          1186380  30 -   7152218 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----TGTTTTTA---TTTTTTAAA-GT------AATTTCTTTC---------------
i vicPac2.KB632521         C 0 I 8
s camFer1.KB018161            15240  30 -     34802 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----TGTTTTTA---TTTTTTAAA-GT------AATTTCTTTC---------------
i camFer1.KB018161         C 0 I 8
s orcOrc1.KB316915          2921599  28 -  11690531 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----TATTTTTA---TTTTTTTAA-TT------AATTTCTT-----------------
i orcOrc1.KB316915         C 0 I 6
s equCab2.chr29            10881964  39 +  33672925 --------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTAAATT--G----TATGTGTA---TTTTTTC---TT------GATTTCTTTC---------------
i equCab2.chr29            C 0 I 8
s cerSim1.JH767738          9914711  39 +  34209287 --------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTGTAAGTT--A----CATGTATA---TTTTTTC---TT------AATTTCTTTC---------------
i cerSim1.JH767738         C 0 I 8
s myoLuc2.GL429990           246374 163 -   2104649 -----------------------------------------gagtgtgcaggaggcagctgatcgatgtttctctctcatcgatgtttctaactctctatccctctcccttcctctctgtaaaaaaatcaataaaatatattaaaaaa--AAACAAAAAACACAATGTATAAATT--G----TATGCATAGTTTTTTTTC---TT------AATTTCTTTA---------------
i myoLuc2.GL429990         I 29 I 7
s loxAfr3.scaffold_15      39462314  37 -  55688157 --------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTAAATTGCA----TGTATACT---TTTTTTT---TT------AATAGT-------------------
i loxAfr3.scaffold_15      C 0 C 0
s triMan1.JH594766            28010  37 +   6345240 --------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATGTAAATTGCA----TGTATACA---TTTTCTT---TT------AATAGT-------------------
i triMan1.JH594766         C 0 C 0
e pteAle1.KB031146          3127282 2717 -   3193751 I

a score=922554.000000
s hg38.chr8_KI270814v1_alt   132929 115 +    141812 TTACAATTCACAATTAGTTAACAATGTTGTTTTAGATAGTTT--ATAATCTCAAGCAGTATTGTCTGAAAAAAA-------TATT-----------TAATTATGGTACCTAAAATT----------------------------CTATATAGTTT------TTTTGTAT
s panTro4.chr8             55035418 115 + 143986469 TTACAATTCACAATTAGTTAACAATGTTGTTTTTGGTAGTTT--ATAATCTCAAGCAGTATTGTCTGAAAAAAA-------TATT-----------TAATTATGGTACCtaaaatt----------------------------ctatatagttt------ttttgtat
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59176044 114 + 153482349 ttataattCACCATTAATTAACAATGTTGTTGTAGGTAGTTT--ACAATCTCAAGCAGTATTGTCTGAAAAAAA-------TATT-----------TAATTATGGTCCATAAAATT----------------------------CTATATAG-TG------TTTTGTAT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81387923 113 - 104879549 TTATAATTCAGAATTCATTAAGAATTTAGTTGTAGGTGGTTT--ATAATCTCAAA-AATATTATCTG-AAAAAA-------TATT-----------TAATTGTGGTCCCTAATATC----------------------------CTATATAATAC------TTTTGTAT
i nomLeu3.chr18            C 0 C 0
s rheMac3.chr8             61699763 115 + 150158102 TTACAATTCACAATTAGTTAACAATGTTGTTGTAGATAGTTT--GTAATCTCAAGCAGTATTGTCTGAAAAAAA-------AATT-----------TAATTATGGTCCCTAAAATT----------------------------CCATATAGtat------ttttgtat
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58373391 115 + 146850525 TTACAATTCACAATTAGTTAACAATGTTGTTGTAGATAGTTT--GTAATCTCAAGCAGTATTGTCTGAAAAAAA-------AATT-----------TAATTATGGTCCCTAAAATT----------------------------CCATATAGTAT------TTTTGTAT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53294856 113 + 139301422 TTACAATTCACAATTAGTTAACAATGTTGTTGTAGGTAGTTT--GTAATCTCAAGCAGTATTGTCTG--AAAAA-------AATT-----------TAATTATGGTCCCTAAAATT----------------------------CTATATAGTAT------TTTTGTAC
i chlSab2.chr8             C 0 C 0
s calJac3.chr7             33716649 117 + 155834243 TTATAATTCATAATTAGTTAAGAATATAGTTGTAGGTAGTTT--ATAATCTCAAAAAATATTATCTGAAA--AAA--TATTTGTT-----------TAATTATGG-CCCTAAAATC----------------------------CTATATAACAC------TTTTGTAT
i calJac3.chr7             C 0 C 0
s saiBol1.JH378196          4072519 154 +   9144518 TTAGATTTCAGAATTATTAAAAAAGTTATGTGTAGATAATTC--ATAATCTCAAACAGTATTATCTGAAAGGAAT--CACTTCTT-----------TAATTGTAGTCCCTAAAATCTACAATTAGATATTTTTTTGTATAATTTTTGTATAATACGATATTTTTTGTAT
i saiBol1.JH378196         C 0 C 0
s otoGar3.GL873762          1571491 123 -   1847653 TTGGAACTCAGAATTATTTAGGAAGTTTTTTGTAAGTAGTTT--ATAATCTCAAACAG--TTGTCTCaaaaaat-------taattcattaattaataattatGGTTCTTAA-ATC----------------------------CTCTATGATAT------TTTTGCAT
i otoGar3.GL873762         C 0 C 0
s vicPac2.KB632521          1186418 122 -   7152218 CTAGTATTCAGAATTATTTAAGAAGTTAATTGTAGGCAGTTT--AAAATCTGAGACAGTATTGTCTGAAAAGAAATTCATTTATT-----------TAGTCATGTCCCCTGAAATC----------------------------CCATATTATAT------CTTTGTGT
i vicPac2.KB632521         I 8 C 0
s camFer1.KB018161            15278 121 -     34802 CTAGTATTCAGAATTATTTAAGAAGTTAATTGTAGGCAGTTT--AAAATCTGAGACAGTATTGTCTGAAAAGAAATTCATTTATT-----------TAGTCATG-CCCCTGAAATC----------------------------CCATATTATAT------CTTTGTAT
i camFer1.KB018161         I 8 C 0
s orcOrc1.KB316915          2921633 122 -  11690531 CTAGTATTCAGAATTGTTTAAGAAGTTAATTGTAGGTAATTT--AAAATCAGAGACAGTATTGCCTGAAAAGAAATCCACATATT-----------TAATCATGGCGCCTAAAATT----------------------------CCATATTATAT------CTTTGTGT
i orcOrc1.KB316915         I 6 C 0
s equCab2.chr29            10882011 122 +  33672925 CTAGTATTCAGAATTATTTAAGAAGTTAATTGTAGGTAATTT--AAAATCTGAGACAGTGTTGTCTGAAAAGAAATTCATTTATT-----------TAATTATGGCTCCTAAAATC----------------------------TTATATGATAA------CTTTGTCT
i equCab2.chr29            I 8 C 0
s cerSim1.JH767738          9914758 121 +  34209287 CTAGTATTCAGAATTATTTAAGAAGTTAATTGTAGGT-ATTT--AAAATCTGAGACAGTATTGTCTGAAAAGAAATTCATTTATT-----------TAATCATTGCCCCTAAAGTC----------------------------TTATATGATAT------CTTTGTGG
i cerSim1.JH767738         I 8 C 0
s pteAle1.KB031146          3129999 120 -   3193751 TTAAAAAATAAAATTATTTAAAGAGTTAATTTTAGGTAATTT--AATATCTGAGACAGTATTGTCTGAAAAT--ATTTATTTATT-----------TAGCCGTGACCCCTAAAATC----------------------------TCATATGATAT------CATTATGT
i pteAle1.KB031146         I 2717 C 0
s myoLuc2.GL429990           246544 123 -   2104649 TTAGTATTCATAATTATTTAAAAAG-TAATTGTAGGTAATTTAAAAAATCTGGGGCAATATTGTCTGAAAAGAAATTCATTTATT-----------TAGTCATTACCCCTAAAATT----------------------------CCATATGATGT------CTTTATGT
i myoLuc2.GL429990         I 7 C 0
s loxAfr3.scaffold_15      39462351 121 -  55688157 CTAGAATTTAGAATTATTGAAGAAGTTAATTGTAGGCAGTTT--ATATTCTGAAACTGTATTGTCTCAAATGAAATTCATTTATT-----------TAGTCATGG-CCCTGAAACC----------------------------CCATATGATAT------CTTTGTGT
i loxAfr3.scaffold_15      C 0 N 0
s triMan1.JH594766            28047 122 +   6345240 CTAGAATTTAGAATAATTGAAGAAGTTAATTGTGGGCAATTT--ATATTCTGAAACAGTATTGTCTCAAATGAAATTCAATTATT-----------TAATCATGGCCCCTGAAACC----------------------------TCTTATGACAT------CTTTGTGt
i triMan1.JH594766         C 0 I 9

a score=81734.000000
s hg38.chr8_KI270814v1_alt   133044 30 +    141812 AAATAA------A------AAATTT------TAAG-----TTCTCATGTTGTA
s panTro4.chr8             55035533 30 + 143986469 aaataa------a------aaattt------taaG-----TTATCATGTTGTA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59176158 30 + 153482349 AAATAA------A------AAGTTT------TAAG-----TTCTCACGTTGTG
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81388036 36 - 104879549 AAATAA------GTAAAACAATTTT------TAAG-----TTTATATATTGTA
i nomLeu3.chr18            C 0 C 0
s rheMac3.chr8             61699878 32 + 150158102 aaataa----taa------aaaatt------taaG-----TTCTTATGTTGTA
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58373506 32 + 146850525 AAATAA----TAA------AAAATT------TAAG-----TTCTTATGTTGTA
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53294969 33 + 139301422 AAATAAT---TAA------AAAAAT------TAAG-----TTCTTATGTTGTA
i chlSab2.chr8             C 0 C 0
s calJac3.chr7             33716766 36 + 155834243 AAATAAGTAAAAG------GATTTA------TAAG-----TTCATATATTGTA
i calJac3.chr7             C 0 C 0
s saiBol1.JH378196          4072673 36 +   9144518 AAATAAGAAAAAA------GATTTT------TAGG-----TTAGTTTGTGGTA
i saiBol1.JH378196         C 0 C 0
s otoGar3.GL873762          1571614 33 -   1847653 AAATAA---GGAA------AAAATT------TAAG-----ATACCATTTTGTA
i otoGar3.GL873762         C 0 C 0
s vicPac2.KB632521          1186540 27 -   7152218 --TAAAAAAAAAA------GATTTT------TAAG-----T-------TTGTA
i vicPac2.KB632521         C 0 C 0
s camFer1.KB018161            15399 22 -     34802 --ATAAAAAGA-----------TTT------TAAG-----T-------TTGTA
i camFer1.KB018161         C 0 C 0
s orcOrc1.KB316915          2921755 36 -  11690531 AAATAAGAAAAAA------GATTTT------TCGG-----TTAGTATGTTGTA
i orcOrc1.KB316915         C 0 C 0
s equCab2.chr29            10882133 28 +  33672925 AAATA----AAAA------AATTTC---------------TTAGTATGATGTG
i equCab2.chr29            C 0 C 0
s cerSim1.JH767738          9914879 34 +  34209287 AAATAAG--AAAA------AATTTT------TAGG-----TTAGTATATTGTG
i cerSim1.JH767738         C 0 C 0
s pteAle1.KB031146          3130119 30 -   3193751 AAATAAG-AAAAA------GATTTT------TAAG-----TTAG-----TATA
i pteAle1.KB031146         C 0 C 0
s myoLuc2.GL429990           246667 36 -   2104649 AAAAAAGAAAAAA------GATTTT------AAAG-----TTAGGATGTTGTA
i myoLuc2.GL429990         C 0 C 0
s triMan1.JH594766            28178 47 +   6345240 aaataaactacaa------agtgttaggtactaagcattattctaatgttgta
i triMan1.JH594766         I 9 I 42

a score=231479.000000
s hg38.chr8_KI270814v1_alt   133074 40 +    141812 TGTTTCCTCTATAG-----TCA-----TAAAAAATTAGGCTTGTTGT-ACA
s panTro4.chr8             55035563 40 + 143986469 TGTTTCCTCTATAG-----TCA-----TAAAAAATTAGGCTTGTTGT-ACA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59176188 40 + 153482349 TGTTTCCTCTATAG-----TCA-----TAAAAAATTAGGCTTGTTGT-ACa
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81388072 40 - 104879549 TGTTTCCTCAACTG-----TCA-----TAACAATTTATGCTTGATAT-AAA
i nomLeu3.chr18            C 0 C 0
s rheMac3.chr8             61699910 40 + 150158102 TGTTTCCTCTATAG-----TCA-----TAAAAAAATAGGCTTGTTGT-ACA
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58373538 40 + 146850525 TGTTTCCTCTATAG-----TCA-----TAAAAAAATAGGCTTGTTGT-ACA
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53295002 37 + 139301422 TATTTCCTCTATAG-----TCA-----TAAAAAATTAGGC---TTGT-ACA
i chlSab2.chr8             C 0 C 0
s calJac3.chr7             33716802 40 + 155834243 TGTTTCCTCAATTG-----TTA-----TAACAACTTAGGCTTGTTAT-AAA
i calJac3.chr7             C 0 C 0
s saiBol1.JH378196          4072709 45 +   9144518 TGTTTTATTCATGGTCTCATTA-----TAACAAATGAAATGTGTTAA-CGA
i saiBol1.JH378196         C 0 C 0
s otoGar3.GL873762          1571647 46 -   1847653 TGTTTCTTCTATGG-----TCACATTTTAACAAATTGAATTTGTTATAAAA
i otoGar3.GL873762         C 0 C 0
s vicPac2.KB632521          1186567 45 -   7152218 CGTTTCCTCTATAG-----TCACATTATAACAAATTGGCCTTGTTGT-AGA
i vicPac2.KB632521         C 0 I 1
s camFer1.KB018161            15421 45 -     34802 CATTTCCTCTATAA-----TCACATTACAACAAGTTGGCCTTGTTGT-AGA
i camFer1.KB018161         C 0 I 1
s orcOrc1.KB316915          2921791 39 -  11690531 TGTTTCCTCTATAA-----TCACatga----atattag--ttattgt-ata
i orcOrc1.KB316915         C 0 C 0
s equCab2.chr29            10882161 45 +  33672925 TGTTTTCTCTATTA-----TCACATAATAGCAAATTGAACTTGGTTA-TAA
i equCab2.chr29            C 0 I 1
s cerSim1.JH767738          9914913 45 +  34209287 TGTTTTCTCAATTA-----TCACATTATAACAAATTGGACTTGTTAT-AAA
i cerSim1.JH767738         C 0 I 1
s pteAle1.KB031146          3130149 45 -   3193751 TGTTTCCTCTATAA-----TCACCTTGTAACAAATTGGGCTTGTTAT-AAA
i pteAle1.KB031146         C 0 I 1
s myoLuc2.GL429990           246703 45 -   2104649 TAGTTCCTCTATAA-----ACACATTATAACAAATTGGACTTGTTAT-AAA
i myoLuc2.GL429990         C 0 I 1
e triMan1.JH594766            28225 42 +   6345240 I

a score=23525.000000
s hg38.chr8_KI270814v1_alt   133114 6 +    141812 ATATAT
s panTro4.chr8             55035603 6 + 143986469 ATATAT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59176228 6 + 153482349 atatat
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81388112 6 - 104879549 ATGTAT
i nomLeu3.chr18            C 0 I 385
s rheMac3.chr8             61699950 6 + 150158102 ATATAT
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58373578 6 + 146850525 ATATAT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53295039 6 + 139301422 ATATGT
i chlSab2.chr8             C 0 C 0
s calJac3.chr7             33716842 6 + 155834243 ATATAT
i calJac3.chr7             C 0 I 306
s saiBol1.JH378196          4072754 6 +   9144518 AATTGG
i saiBol1.JH378196         C 0 I 2
s otoGar3.GL873762          1571693 6 -   1847653 ATGGAT
i otoGar3.GL873762         C 0 C 0
s vicPac2.KB632521          1186613 6 -   7152218 CTGGAT
i vicPac2.KB632521         I 1 C 0
s camFer1.KB018161            15467 6 -     34802 CTGGAT
i camFer1.KB018161         I 1 C 0
s equCab2.chr29            10882207 6 +  33672925 ATTGAT
i equCab2.chr29            I 1 C 0
s cerSim1.JH767738          9914959 6 +  34209287 ATGGAT
i cerSim1.JH767738         I 1 C 0
s pteAle1.KB031146          3130195 6 -   3193751 ATGGGT
i pteAle1.KB031146         I 1 C 0
s myoLuc2.GL429990           246749 6 -   2104649 ATGAAT
i myoLuc2.GL429990         I 1 C 0
e triMan1.JH594766            28225 42 +   6345240 I
e orcOrc1.KB316915          2921830 0 -  11690531 C

a score=-9814.000000
s hg38.chr8_KI270814v1_alt   133120 2 +    141812 CT-
s panTro4.chr8             55035609 2 + 143986469 CT-
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59176234 2 + 153482349 ct-
i ponAbe2.chr8             C 0 C 0
s rheMac3.chr8             61699956 2 + 150158102 CT-
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58373584 2 + 146850525 CT-
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53295045 2 + 139301422 CT-
i chlSab2.chr8             C 0 C 0
s saiBol1.JH378196          4072762 2 +   9144518 CA-
i saiBol1.JH378196         I 2 C 0
s otoGar3.GL873762          1571699 2 -   1847653 CT-
i otoGar3.GL873762         C 0 C 0
s vicPac2.KB632521          1186619 1 -   7152218 -C-
i vicPac2.KB632521         C 0 C 0
s camFer1.KB018161            15473 1 -     34802 -C-
i camFer1.KB018161         C 0 C 0
s equCab2.chr29            10882213 1 +  33672925 -C-
i equCab2.chr29            C 0 C 0
s cerSim1.JH767738          9914965 2 +  34209287 -CT
i cerSim1.JH767738         C 0 C 0
s pteAle1.KB031146          3130201 1 -   3193751 -A-
i pteAle1.KB031146         C 0 C 0
s myoLuc2.GL429990           246755 2 -   2104649 -CT
i myoLuc2.GL429990         C 0 C 0
e calJac3.chr7             33716848 306 + 155834243 I
e nomLeu3.chr18            81388118 385 - 104879549 I
e triMan1.JH594766            28225 42 +   6345240 I
e orcOrc1.KB316915          2921830 0 -  11690531 C

a score=101029.000000
s hg38.chr8_KI270814v1_alt   133122 14 +    141812 TCTATTTAATTTTT
s panTro4.chr8             55035611 14 + 143986469 TCtatttaattttt
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59176236 14 + 153482349 tttatttaattttt
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81388503 14 - 104879549 tTTATTTAATTTTT
i nomLeu3.chr18            I 385 C 0
s rheMac3.chr8             61699958 14 + 150158102 TCTATTTAACTTTT
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58373586 14 + 146850525 TCTATTTAACTTTT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53295047 14 + 139301422 TCTATTTAATGTTT
i chlSab2.chr8             C 0 C 0
s calJac3.chr7             33717154 14 + 155834243 tctatttatcttTT
i calJac3.chr7             I 306 C 0
s saiBol1.JH378196          4072764 14 +   9144518 TCTATTTAATTTTT
i saiBol1.JH378196         C 0 C 0
s otoGar3.GL873762          1571701 14 -   1847653 TCtatttaattttt
i otoGar3.GL873762         C 0 C 0
s vicPac2.KB632521          1186620 10 -   7152218 ----TTTAATTTTT
i vicPac2.KB632521         C 0 C 0
s camFer1.KB018161            15474 10 -     34802 ----TTTAATTTTT
i camFer1.KB018161         C 0 C 0
s equCab2.chr29            10882214 10 +  33672925 ----TTAAATTTTT
i equCab2.chr29            C 0 C 0
s cerSim1.JH767738          9914967 14 +  34209287 TTTATTTAATTTTT
i cerSim1.JH767738         C 0 C 0
s pteAle1.KB031146          3130202 14 -   3193751 TTTGTTGAATCTGT
i pteAle1.KB031146         C 0 C 0
s myoLuc2.GL429990           246757 14 -   2104649 TTTGTTTATTTTTT
i myoLuc2.GL429990         C 0 N 0
e triMan1.JH594766            28225 42 +   6345240 I
e orcOrc1.KB316915          2921830  0 -  11690531 C

a score=198319.000000
s hg38.chr8_KI270814v1_alt   133136 34 +    141812 ATAATAAATGGTTTACGTTTAGCAAATGAGAATT
s panTro4.chr8             55035625 34 + 143986469 ataataaatGGTTTACATTTAGCAAATGAGAATT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59176250 34 + 153482349 ataataaatGGTTTGCATTTAGCAAATGAGAATT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81388517 34 - 104879549 GCAATAAATGATTTGCATTTAGAAAATTAGAATT
i nomLeu3.chr18            C 0 C 0
s rheMac3.chr8             61699972 34 + 150158102 ATAATAAATGGTTTGCATTTAGCAAATGAGAATT
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58373600 34 + 146850525 ATAATAAATGGTTTGCATTTAGCAAATGAGAATT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53295061 34 + 139301422 ATAATAAATGGTTTGCATTTAGCAAATGATAATT
i chlSab2.chr8             C 0 C 0
s calJac3.chr7             33717168 33 + 155834243 ATAATAAATGG-TTGCATCCAGTAAATGAGAATT
i calJac3.chr7             C 0 C 0
s saiBol1.JH378196          4072778 33 +   9144518 A-AATAAATGGTTTTTGTTtagtaaataaatatc
i saiBol1.JH378196         C 0 C 0
s otoGar3.GL873762          1571715 28 -   1847653 ataataaatGGTTTGCATTTGGCAAATG------
i otoGar3.GL873762         C 0 C 0
s vicPac2.KB632521          1186630 34 -   7152218 ATAACAAgtggattacatttagtaagtgaatgtt
i vicPac2.KB632521         C 0 C 0
s camFer1.KB018161            15484 34 -     34802 ACAACAAgtggattacatttagtaaatgaatgtt
i camFer1.KB018161         C 0 C 0
s equCab2.chr29            10882224 34 +  33672925 ATGACAAATAGATTACATTTAAtaaatgattatt
i equCab2.chr29            C 0 C 0
s cerSim1.JH767738          9914981 34 +  34209287 ACAACAAAtggattacatttagtaaatgattgtt
i cerSim1.JH767738         C 0 C 0
s pteAle1.KB031146          3130216 33 -   3193751 ACAGAAAATGG-TTACATTtagtaaatgaacatt
i pteAle1.KB031146         C 0 I 3
e triMan1.JH594766            28225 42 +   6345240 I
e orcOrc1.KB316915          2921830  0 -  11690531 C

a score=4095.000000
s hg38.chr8_KI270814v1_alt   133170 1 +    141812 A
s panTro4.chr8             55035659 1 + 143986469 A
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59176284 1 + 153482349 A
i ponAbe2.chr8             C 0 C 0
s rheMac3.chr8             61700006 1 + 150158102 A
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58373634 1 + 146850525 A
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53295095 1 + 139301422 A
i chlSab2.chr8             C 0 C 0
s vicPac2.KB632521          1186664 1 -   7152218 a
i vicPac2.KB632521         C 0 I 3
s camFer1.KB018161            15518 1 -     34802 a
i camFer1.KB018161         C 0 I 7
s equCab2.chr29            10882258 1 +  33672925 a
i equCab2.chr29            C 0 I 433
s cerSim1.JH767738          9915015 1 +  34209287 a
i cerSim1.JH767738         C 0 I 2
e calJac3.chr7             33717201 0 + 155834243 C
e nomLeu3.chr18            81388551 0 - 104879549 C
e triMan1.JH594766            28225 42 +   6345240 I
e pteAle1.KB031146          3130249 3 -   3193751 I
e orcOrc1.KB316915          2921830 0 -  11690531 C
e otoGar3.GL873762          1571743 0 -   1847653 C
e saiBol1.JH378196          4072811 0 +   9144518 C

a score=949386.000000
s hg38.chr8_KI270814v1_alt   133171 489 +    141812 CAAGTGTTTAACAAATGAGAATTACAAATGTTCAAGTAACctcttgaacaacatggggattaggg-tgctgat--ccccagtgtagctgaaaatctg-catt-------------taa------------cttttga-ctctcccaaaatgtaactcctaatagcctagtattgacctaaagcttcac------tgaaaacataaacagttatgtattgtatactgtattct-----tgcaataaa--------------gtcata------------------tgtattg-ta--------cactgtattcttgcaataaagcaatctgaagaaaagaaactta-tgaagaaaattataaggtggaaaaaatatatttactgttc-actaagtggaagtgcattatcatacgtaaaggtcttcattctcattgtgttcacattgcgtaggctgagaaggatgaggaagacgagaaatttgtctttctttcttagtgtggcagtgggagtgaagaaaatctatatattataa-ggggggtcctgcaattccaacccttgt---tcaaggatcaactg
s panTro4.chr8             55035660 489 + 143986469 CAAGTGTTTAACAAATGAGAATTACAAATGTTCAAGTAACctcttgaacaacatggggattaggg-tgctgat--ccccagtgtagctgaaaatctg-catt-------------taa------------cttttga-ctctcccaaaatgtaactcctaatagcctagtattgacctaaagcttcac------tgaaaacataaacagttatgtattgtatactgtattct-----tgcaataaa--------------gtcata------------------tgtattg-ta--------cactgtattcttgcaataaagcaatctgaagaaaagaaactta-tgaagaaaattataaggtggaaaaaatatatttactgttc-actaagtggaagtgcattatcatacgtaaaggtcttcattctcattgtgttcacattgcgtaggctgagaaggatgaggaagacgagaaatttgtcttgctttcttagtgtggctgtgggagtgaagaaaatctatatattataa-ggggggtcctgcaatgccaacccttgt---tcaaggatcaactg
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59176285 489 + 153482349 CAAGTGTTTAGCAAATGAGAATTACAAATCTTCAagttacctcttgaacaacatggggattaggg-tgctgat--ccctagtgtagctgaaaatctg-tgtg-------------taa------------cttttga-ctctcccaaaatgtaactcctaatagcctagtattgacctaaatctttac------tgaaaacataaacagttatgtatggtatactgtattct-----tgcaataaa--------------gtcata------------------tgtattg-ta--------cactgtattcttgcaataaagcaatctgaagaaaagaaactta-cgaagaaaattataaggtggaaaaaatatatttactgttc-actaattggaagtgaattatcatacgtaaagttcttcattctcattgtgttcatattgagtaggctgagaaggatgaggcagatgagaaatttgtcttgctttcttggtgtggcagtgggagggaagaaaatctatgtattataa-ggggggtcctgcaatgcaaacccttgt---tcaaggatcaactg
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81388551 451 - 104879549 -------------------AATTGc---------agttgggtcttgagcaacatgagagttaggg-tgctgatcccccccatgctgctgaaaatctg-ctttatatgaaaatctgttt------------cttttga-ctcctccaaaact---ctactaatattctactgttgacctggagcctgaaaaaaggtgaaaccataagcagtcaattaacccatagtttctatt-----------------------------ttata------------------tgtacca-ta--------tcctgtattcttagaataaagtgagctggagga---aaact-----------gttataaagaggaagaaatatattcactattt-attagatgaaagtaaattattatacataaaggacttcattctcattgccttcatgttgagtaggctgataaggaggaggcagaggagagatttgtcttgctatcttgcagtggcaaaggaaaaga--aaaatctgtctatt---a-gtgggctcctagagtgaaaacccttat---tcaaagatcaactg
i nomLeu3.chr18            C 0 C 0
s rheMac3.chr8             61700007 488 + 150158102 CCAGTGTTTAGCAAATGAGAATTACAAATGTTCAagttaccccttgaacaacaagggaattaggg-tgctgat--cccccgtgtagctgaaaatctg-catt-------------tga------------cttttga-ctctcccaaaatgtaactcgtaatagcctcgtgttgacctaaagctttac------tgaaaacataaacagttacatattgtatactgtatttt-----tgcaataaa--------------gtcata------------------tgtattg-ta--------cactgtattcttgcaataaagcaatctgaagaaaaaaaactta-ggaagaaaattataagatggaaaaaatatatttactattc-actaagtggaagtgaattatcatatataaaggtcttcattctcactgtgtgcacattgaggaggctgagaaggatgaggaagaggagaaatttgtcttgcttttttagtgtggctgtgggagggaagaaaatctatgtattataa--gggggtcctgcaatgcaaacccttgt---tcaaggatcaactg
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58373635 488 + 146850525 CCAGTGTTTAGCAAATGAGAATTACAAATGTTCAagttaccccttgaacaacaagggaattaggg-tgctgat--cccccgtgtagctgaaaatctg-catt-------------tga------------cttttga-ctctcccaaaatgtaactcctaatagcctcatgttgacctaaagctttac------tgaaaacataaacagttacatattgtatactgtatttt-----tgcaataaa--------------gtcata------------------tgtattg-ta--------cactgtattcttgcaataaagcaatctgaagaaaaaaaactta-ggaagaaaattataagatggaaaaaatatatttactattc-actaagtggaagtgaattatcatatataaaggtcttcattctcactgtgtgcacattgaggaggctgagaaggatgaggaagaggagaaatttgtcttgcttttttagtgtggctgtgggagggaagaaaatctatgtattataa--gggggtcctgcaatgcaaacccttgt---tcaaggatcaactg
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53295096 490 + 139301422 CAAGTGTTTAGCAAATGAGAATTACAAATGTTCAagttacctcttgaacaacatgggaattaggg-tgctgat--ccccagtgtagctgaaaatctg-catt-------------taa------------cttttga-ctctcccaaaatgtaactcctaatagcctagtgttggcctaaagctttac------tgaaaacataaacagttacatattgtatactgtattct-----tgcaataaa--------------gtcata------------------tgtatta-ta--------cactgtattcttgcaataaagcaatctgaagaaaagaaacttacaaaagaaaattataaggcggaaaaaatacatttactattc-a-taagtggaagtgaattgtcatacataaatgtcttcattctcactgtgtgcacattgaggaggctgagaaggatgaggaagaggagaaatttgtcttgcttttttagtgtggcagtgggagggaagaaaatctatgtattataagggggggtcctgcaatgcaaacccttgt---tcgaggatcaactg
i chlSab2.chr8             C 0 C 0
s calJac3.chr7             33717201 422 + 155834243 -------------------AGTTAc---------agttgagtattaagaaacatgagagttaggg-tgctgat--tcctcacgcagctgaaaatctgcttta-------------taagaaaatctatttattttga-ttcccccaaaact---ctactaatagtctattgttgacctggagcctcac------tgaaagcataaacagtcaattaacacatagttcatatt-----------------------------ttata------------------tgtacta-ta--------tactgtattcttacaataaagtgagctggagaaa---------------------ataatgaggaa-aaatatattcattattt-actaagtggaagtgaattattatacataaagctgttcattctcattgccttcatgttgagcaggctgataaggatggggcataggagagatttgtcttgctaccttatagtggcc--aagaacaagaaaaatctgcctattgctg----ggctcctacag----------------tGAAAGGTCAACTG
i calJac3.chr7             C 0 C 0
s saiBol1.JH378196          4072811 412 +   9144518 -------------------aattac---------agttgacctttgaataacataggatttagggatactgat--cccctgtgcagctgaaaatctg-tgta-------------taa------------cttttgactttccccagaatt-agctactaataagtgactattgac------------------------cagaaacagtcagttaagacat--ttggtatg-----------------------------ttaca------------------tgtgttacca--------tattatattcttataagaaagtgagatagagaaaa-atggtta-ttagcaaaatcataaggaataa-aaatatatttactatttaattaagtgaaagtg-------------gaagtgggtcatcctcatcctctccaagttgagtaggctgagaaggaggaagaa----ggagattggtcctgctgtctca-ggtggta--gaggtggaaggaaatctgcatgtaatta----cactgctgcaggtcaagttcctgttattcaaaggtcaactg
i saiBol1.JH378196         C 0 C 0
s otoGar3.GL873762          1571743 443 -   1847653 -------------------AATTGG---------agttgacccttgaccaacctaggaattaggc------at--gcc------agtaaaaaatctg-cata-------------taa------------cttttga-ttcctcccaaacttgactactaattgaccagaa-------gaagccttac------caataatacaagcagttgattaacacatattatgtatgttatgtgtattacatatttatggtccctgtcatatctactcaagcctgccattgtattg-caaaagcagccactgtatttttacaataag------tgaaagaa--actgtta-ttaagaaagccaggaggaagaa-ggttatatttactattc-attaagtggaag------------------ggtcttcatcctcatcattttcacatttagcaggctgag------gaggaaaaggagaggttgtttctgctttctgtaggtggcagaagcaggg--gaaaatctgtagatc---a-gtgggcccctgcagta-------ttgt---tcaaaagtcagctA
i otoGar3.GL873762         C 0 C 0
e vicPac2.KB632521          1186665   3 -   7152218 I
e camFer1.KB018161            15519   7 -     34802 I
e equCab2.chr29            10882259 433 +  33672925 I
e triMan1.JH594766            28225  42 +   6345240 I
e pteAle1.KB031146          3130249   3 -   3193751 I
e cerSim1.JH767738          9915016   2 +  34209287 I
e orcOrc1.KB316915          2921830   0 -  11690531 C

a score=24294.000000
s hg38.chr8_KI270814v1_alt   133660 6 +    141812 tatgac
s panTro4.chr8             55036149 6 + 143986469 tatgac
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59176774 6 + 153482349 tatgac
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81389002 6 - 104879549 TGTGac
i nomLeu3.chr18            C 0 C 0
s rheMac3.chr8             61700495 6 + 150158102 tatgac
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58374123 6 + 146850525 tatgac
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53295586 6 + 139301422 TAGGac
i chlSab2.chr8             C 0 C 0
s calJac3.chr7             33717623 6 + 155834243 TGTGGc
i calJac3.chr7             C 0 C 0
s saiBol1.JH378196          4073223 6 +   9144518 tattac
i saiBol1.JH378196         C 0 C 0
s otoGar3.GL873762          1572186 6 -   1847653 TATTAC
i otoGar3.GL873762         C 0 C 0
s cerSim1.JH767738          9915018 6 +  34209287 tattac
i cerSim1.JH767738         I 2 C 0
s pteAle1.KB031146          3130252 6 -   3193751 tattac
i pteAle1.KB031146         I 3 C 0
e vicPac2.KB632521          1186665 3 -   7152218 I
e camFer1.KB018161            15519 7 -     34802 I
e equCab2.chr29            10882259 433 +  33672925 I
e triMan1.JH594766            28225 42 +   6345240 I
e orcOrc1.KB316915          2921830 0 -  11690531 C

a score=12021.000000
s hg38.chr8_KI270814v1_alt   133666 3 +    141812 atc
s panTro4.chr8             55036155 3 + 143986469 atc
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59176780 3 + 153482349 atc
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81389008 3 - 104879549 ata
i nomLeu3.chr18            C 0 C 0
s rheMac3.chr8             61700501 3 + 150158102 atc
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58374129 3 + 146850525 atc
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53295592 3 + 139301422 atc
i chlSab2.chr8             C 0 C 0
s calJac3.chr7             33717629 3 + 155834243 ata
i calJac3.chr7             C 0 C 0
s saiBol1.JH378196          4073229 3 +   9144518 ata
i saiBol1.JH378196         C 0 C 0
s otoGar3.GL873762          1572192 3 -   1847653 ATA
i otoGar3.GL873762         C 0 C 0
s vicPac2.KB632521          1186668 3 -   7152218 ata
i vicPac2.KB632521         I 3 C 0
s cerSim1.JH767738          9915024 3 +  34209287 atg
i cerSim1.JH767738         C 0 C 0
s pteAle1.KB031146          3130258 3 -   3193751 ata
i pteAle1.KB031146         C 0 C 0
e camFer1.KB018161            15519 7 -     34802 I
e equCab2.chr29            10882259 433 +  33672925 I
e triMan1.JH594766            28225 42 +   6345240 I
e orcOrc1.KB316915          2921830 0 -  11690531 C

a score=2677.000000
s hg38.chr8_KI270814v1_alt   133669 1 +    141812 a
s panTro4.chr8             55036158 1 + 143986469 a
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59176783 1 + 153482349 a
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81389011 1 - 104879549 g
i nomLeu3.chr18            C 0 C 0
s rheMac3.chr8             61700504 1 + 150158102 a
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58374132 1 + 146850525 a
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53295595 1 + 139301422 a
i chlSab2.chr8             C 0 C 0
s calJac3.chr7             33717632 1 + 155834243 g
i calJac3.chr7             C 0 C 0
s saiBol1.JH378196          4073232 1 +   9144518 g
i saiBol1.JH378196         C 0 C 0
s otoGar3.GL873762          1572195 1 -   1847653 G
i otoGar3.GL873762         C 0 C 0
s vicPac2.KB632521          1186671 1 -   7152218 g
i vicPac2.KB632521         C 0 C 0
s orcOrc1.KB316915          2921830 1 -  11690531 g
i orcOrc1.KB316915         C 0 C 0
s cerSim1.JH767738          9915027 1 +  34209287 g
i cerSim1.JH767738         C 0 C 0
s pteAle1.KB031146          3130261 1 -   3193751 g
i pteAle1.KB031146         C 0 C 0
e camFer1.KB018161            15519 7 -     34802 I
e equCab2.chr29            10882259 433 +  33672925 I
e triMan1.JH594766            28225 42 +   6345240 I

a score=2170972.000000
s hg38.chr8_KI270814v1_alt   133670 443 +    141812 tgatttgt-----------------------------------gt--cactaaaaaaggaaatttctttagagcttggaacttaataataattttctggtaccataatcatatgtcag----taagaattgtta-aacttattcagggtgtataagtacc---aataagaa---attagttttt------------------------------------------------------------------------aaagatacc-------tgct--tagtgcagaagtc-agaagagcaata-ttttgttgagaagcacaggttgtgttacatactcttgtaccaagaaggtctcattattattggcttcattacccctcagttgaaaccaactaagataatatttacttcattaaaacaagatgtg--------------ttgt-tttatctggtgggtaat---tgtcataata--gtaattttgttacaacaagatatgttctgttactactagccaaaatattattataatgaatattaaaatagcccaactctaggctcaataaattacaat--aaaagtacaaaatat-
s panTro4.chr8             55036159 443 + 143986469 tgatttgt-----------------------------------gt--cactaaaaaaggaaatttctttagagcttggaacttaataataattttctggtaccataatcatatgtcag----taagaattgtaa-aacttattcagggtacataagtacc---aataagaa---attagttttt------------------------------------------------------------------------aaagatacc-------tgct--tagtgcagaagtc-agaagagcaata-ttttgttgagaagcacaggttgtgttacatactcttgtaccaagaaggtctcattattattggcttcattacccctcagttgaaaccaactaagataatatttacttcattaaaacaaggtgtg--------------ttgt-tttatctggtgggtaat---tgtcataata--gtaattttgttacaacaagatatgttctgttactattagccaaaatattattataatgaatattaaaatagcccaactctaggctcaataaattacaat--aaaagtacaaaatat-
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59176784 442 + 153482349 tgatttgt-----------------------------------gt--cactaaaaaaggaaatttctttagaggttggaa-ttaataataattttctggtaccataatcatatgtcag----taagaattgtaa-aacttattcagggtgcataagtacc---aataagaa---attagttttt------------------------------------------------------------------------aaagatacc-------tgct--tagtgcagatgtc-agaagagcaata-tttggttgagaagcacaggttgtgttacatactcttgtaccaacaaggtctcattattattggcttcattacccctaagttgaaaccaactgagataatatttacttcattaaaacaagatgta--------------ttgt-tttatctggtgggtaat---tgtcatagtt--gtaattttgttacaacaagatatgttctgttactactaaccaaaatattattataatgaatattaaaatagcccaattctaggctcaataaattacaat--aaaagtacaaaatat-
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81389012 444 - 104879549 tgacttgt-----------------------------------gc--cactaaaaaagtaactatctttagaatttggaactcaataatacttttcttgcaccataaatgaatgtcag----taagaattaacataacttagcgagggtgcatcagtacc---aataggag---attatttttc------------------------------------------------------------------------aaagatacc-------tact--gagtgcagaagtc-agaaaagcaatt-ctttgttgagaagcgcaggttatgttgcatagtcttgtaccaacaagttctcaagattatcaacttcatttcctctaagttgaaaccaaataagat-atatttacttcattagaacaagatgtg--------------ttgt-tctatctgctggataattagtgtgttaata--gtaattttgctacaacaagata--ctctgttcctactagccaaaatattatcattatatatattcaactagctcaactctaggctcaacaaattataat--aaaagtggaaaaaat-
i nomLeu3.chr18            C 0 C 0
s rheMac3.chr8             61700505 435 + 150158102 tgatttgt-----------------------------------gt--cactaaaaaagtaactttctttagagcttggaacttaatgataattttctggtaccataatcatatgtcag----taggaattgtaa-aacttagccagggtgcataagtacc---aataggaa---attacttttt------------------------------------------------------------------------aaagatacc-------tgct--tagtgcagaagtc-agaagaacaata-ttttgttgagaagcacagcttgtgttacataatcttgtaccaacaaggtctcactattattggctgcattacccccaagttgacaccaagtgagataatatttacttcattaaaacaagatgtg--------------ttgcttttatccaatggataat---tgtcataata--gtaattttgttacaacaagatatgctctgttactactagccaaaatatt---------aatattaaaatagcccaactctaggcttaacaaattacaat--aaaagtacaaaatat-
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58374133 434 + 146850525 tgatttgt-----------------------------------gt--cactaaaaaagtaactttctttagagcttggaacttaatgataattttctggtaccataatcatatgtcag----taggaattgtaa-aacttagccagggtgcataagtacc---aataggaa---attacttttt------------------------------------------------------------------------aaagatacc-------tgct--tagtgcagaagtc-agaagaacaata-ttttgttgagaagcacagcttgtgttacataatcttgtaccaacaaggtctcactattattggctgcattacccccaagttgaaaccaagtgagataatatttacttcattaaaacaagatgtg--------------ttgc-tttatccaatggataat---tgtcataata--GTAattttgttacaacaagatatgctctgttactactagccaaaatatt---------aatattaaaatagcccaactctaggcttaacaaattacaat--aaaagtacaaaatat-
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53295596 443 + 139301422 tgatttgt-----------------------------------gt--cattaagaaagtaactttctttagagcttggaacttaataataattttctggtaccataatcacatgtcag----taagaattgtaa-aacttagccagggtacataagtacc---aataggaa---attagttttt------------------------------------------------------------------------aaagatacc-------tgct--tagtgcagaagtc-agaagagcaaca-ttttgttgagaagcacaagttgtgttacatactcttgtaccaacaagatctcactattattgactgcattacccctaagttgaaaccaactgagataatatttacttcattaaaacaagatgtg--------------ttgt-tttatctggtggagaat---tgtcataata--gtaattttgttataacaagatatgccctgttactactagccaaaatattattataataaatattaaaatagcccaactctaggctcaacaaattacaat--aaaagtacaaaatat-
i chlSab2.chr8             C 0 I 314
s calJac3.chr7             33717633 524 + 155834243 tgacttgt-----------------------------------gt--cactaaaaaagtaactatctttagaatttggaactcaataatactcttctggcaccataaacaaatgtcaa----aAAGAATTACAA-AACTT----AGGGTGCATCAGTTTTGTAAGTGGAAGTGAATTATTTTTTTTTTtggaagtgaattattatacataaagctcttcattctcattgccttcatgttgagcagacAAATAtttgaaaaataatctcctactact--ggatgcagaagtc-agaaaggcaattctttttttgtgaagtgcaggttatgttacatagtcttgtaccaacaaggtctcactattatcaacttcattccctctagcttgaaaccaaatcatat-atatttacttcattagaacaagaTGAG--------------TTGT-TTTATCTGCTGGATGATTAGTGTGTTAATA--GTAattttgttacaacaagata--ctctgttcctactagtcaaaatatgatcattataaatattcaaatagat-aactctaggctcaacaaattataac--aagagtacacaaaat-
i calJac3.chr7             C 0 C 0
s saiBol1.JH378196          4073233 417 +   9144518 tgatttat-----------------------------------gtcacacaaaaaaagtaac--ttcttaaaactgggaactcaacaatacctttttggtaacataaacaaatgtcac----taagaactgcaa-aacgtatccagtgagcactaatact---aatagaag---attacttttt------------------------------------------------------------------------aaaga-----------tacc--aagtgtagaagtc-agaaaaggaatt-tcttgttgaaaagcacaggtcatgttacatattattataccaacgaggtctcac--ttactgacttcattcttcctaatttgaaattgaatgagat-acatttacttcattaaaacaag---------------------------atccactagttaattgtcatgatagca--ataattttgctagaacaaaata--atctgttaccagtagcccaaaggttattgtaatcaatacctaatagcca-aactctaggctcaacaaattataat--caaagtgc--------
i saiBol1.JH378196         C 0 C 0
s otoGar3.GL873762          1572196 474 -   1847653 AAAGGTGTAGCTATCTTTAAAGGTGATACTACTATCTTTAAAGGT--CATGAAAGGTATAACTATCTTTAaaactgagaactcaaaaatacttttctggtgctataaacaaatgacca----taagaaatgtaa-aacttagccagtgtgcaccaatgcc---aacaggag---attcttttta------------------------------------------------------------------------aaaggtacc-------tctt--gattatagaagtc-agaaatgtaatt-ccttgttgacaagcgcaggttacgttacatatttgcaggccaatgagggcttgcttttgtcaactttattccctacaagttgaaactgaacaagac-atatttattttgttataacaggatgtg--------------t----tctatctgctgcattattatcatgatgaca--ataactttgttagaacaagata--atctgtcaccattagccaaaaggttaacacaataaatattccagtagcccaactctagg-taaacaaatggtaac--caaagaacaaaaaat-
i otoGar3.GL873762         C 0 I 2
s vicPac2.KB632521          1186672 461 -   7152218 tgattagt-----------------------------------ct--cactaaaaaagttactatcattaaaactgggagctcagaaatgcctttctggtgctataaagaaatggcaaacaataagaaacgcaa-aactgagccagtgtgcagca-tacc---aatgagag---attgcttttt------------------------------------------------------------------------aaagatacc-------tagtggcagtacagaagtc-aaaaaagcaatg-ccttgttgagaagcactggttacttttcacattattataccaacaaggtcccactcataccaacttaattccttttaagtccaaacagaatgaggt-atgttgacttcatgagagccagaTGTCttcttctttttta-tttt-tttattttttGGATGCT---TGTCATGACACtataattttcttacaacaagatt--ctctgttgccattagttaaaggattatcatagtaagtattcaaatagcccaactcgggactcaacaaattctaat--aaaatcacagaaatgc
i vicPac2.KB632521         C 0 C 0
s camFer1.KB018161            15526 463 -     34802 tgattagt-----------------------------------ct--cactaaaaaagttactgtctttaaaactgggagctcagaaatgccttcctggtgctataaacaaatggcaaacaataagaaatgcaa-aactgagccagtgtgcagca-tacc---aataagag---attgtttttt------------------------------------------------------------------------aaagatacc-------tagtgacagtacagaagtcaaaaaaagcaatg-ccttgttgagaagcactggttacttttcacattattataccaacaaggtcccactctaaccaacttaattccttttaagtccaaacagaatgaggt-atgttgacttcatgagagccagatgtcttcttcttttttattttt-tttattttttggatgct---tgtcatgatactataattttcttagaacaagatt--ctctgttgccattagttaaaggattatcatagtaaatattcaaatagcccaactcaggactcaacaaattctaat--aaaatcacagaaatgc
i camFer1.KB018161         I 7 C 0
s orcOrc1.KB316915          2921831 443 -  11690531 tgattagc-----------------------------------ct--cactaaaaacgttaccaactttaagcctgggaactcaacagtaccttcctggtactttaaacagatggcaaacaagaagaactgcaa-agctgagccagtgtgcagcg-tacc---aagaagag---attatttttg------------------------------------------------------------------------aaagatacc-------tactgatagtacagaagtc-agaaaagcaacg-cctgatagagaagcactggttattttccatattattgtaccagcgaggtctcactattaccaacttcattcctcacaagtccaaacagagtgagat-aggctgacttcatcagaaccagatgt---------------ttct-tctgtgtgttggataat---tgtcatgaCAGtataattttgttagaacgagatg--ctctgttgccattagttaaaggattatcat----aatattcaaatagcccaactggagactcagcaaattctaat--aaaagcacaaaaatac
i orcOrc1.KB316915         C 0 C 0
s cerSim1.JH767738          9915028 448 +  34209287 tgatttat-----------------------------------ct--cactaaaacagtagccatcttcaaaatggagaattcaaccacaccttcttggtactataaataaatggcaaacaataagaactgcaa-aatttagccagtgtgaggcaatgct---gctaagag---attttttttt------------------------------------------------------------------------aaagatacc-------tactcatagtacagaagtc-agaaaagctatg-ctttgttgagaagcagaggttattttacacagtgttataacaacgaggtctctctattatcaacttcactcct-ataagtcaaaacagaatgagat-gtgttgactttattagaacaagatgtt--------------ttct-tccgttcgttggataat---tgtcatgacagtgtagttttgtaagaacaagatg--ctctgttgccattagtcaaaagattaggataataaatattcaaatagcccaactctggactcaacaaattataat--aaaagtacaaaaatgt
i cerSim1.JH767738         C 0 C 0
s pteAle1.KB031146          3130262 413 -   3193751 tgatttgt-----------------------------------ct--tactcaaaatgtaac------taaaactaggaactcaataataccttcccagtactgtcaacaaacggcaaac---aagaatcacaa-aacttagccagtg--------tact---ac------------------------------------------------------------------------------------------------tatc-------tactgatagtaaagaagtc-agaaaagcaatg-ccctgttgaaaagcatagattattttacttatttttgtaccaagaaggtctcattgttatcacctttgttcctcataagtcaaaacagtattagat-atgttgatttcattagaacaaaatgtt--------------tcct-tctatttgttgaataat---tgtcatgataCTGTAATTTCTttagaacgagatg--ctctgtcaccattagtcaaaatatagtcataataaaaatttacatagcttaagttgggactcaacaaattacaataaaaaagtacaaaaaagt
i pteAle1.KB031146         C 0 C 0
e equCab2.chr29            10882259 433 +  33672925 I
e triMan1.JH594766            28225  42 +   6345240 I

a score=241643.000000
s hg38.chr8_KI270814v1_alt   134113 77 +    141812 ttt-acaacaag-aaaaatgGTATTATACTGCCTGGATGTAAtac--aatgtacaatatacaatgtacattgtacaatATG
s panTro4.chr8             55036602 77 + 143986469 ttt-acaataag-aaaaatgGTATTATACTGCCTGGAAGTAAtac--aatgtacaatatacaatgtacattgtacaatATG
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59177226 77 + 153482349 ttt-acaataag-aaaaatgGTATTATACTGCCTGGATGTAAtac--aatgtacaatatacaatgtacattgtacaatATG
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81389456 62 - 104879549 tttcacaataac-agaagtgccactgtgatACCTAAATATGACAC--AA----------------TACGTTGTACAATATG
i nomLeu3.chr18            C 0 C 0
s rheMac3.chr8             61700940 77 + 150158102 ttt-ataataag-aaaaatgGTATTATACTGCCTGGGTATAATAC--AATGTACAATATACAATGTACATTATACAATATG
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58374567 77 + 146850525 ttt-acaataag-aaaaatgGTATTATACTGCCTGGGTATAatac--aatgtacagtatacaatgtacattatacaatatG
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53296353 60 + 139301422 TTT-ACAACAAG-AAAAATGG---TATACTGCCTGGGTGTAATAC--AATGTACAA--------------TATACAGTATG
i chlSab2.chr8             I 314 C 0
s calJac3.chr7             33718157 61 + 155834243 ttt-acaatatc-aaaaatactactgtgatACCTAAATGTGACAC--AA----------------TGCATTGTACAATATG
i calJac3.chr7             C 0 C 0
s saiBol1.JH378196          4073650 63 +   9144518 ttc-acaataac-aaaaatgctactatgctacctagatgtgacacctaa----------------tacattgtacagtctg
i saiBol1.JH378196         C 0 C 0
s otoGar3.GL873762          1572672 59 -   1847653 ttt-gccataac-aa-----ttgctgtgttaactagatgtgacac---------------cttcatgcattgtacagtctg
i otoGar3.GL873762         I 2 C 0
s vicPac2.KB632521          1187133 64 -   7152218 ttc-acatgaacaaaaaacatgactgtgtggcctagatgtgacccctaa----------------tgcattgttcagtctg
i vicPac2.KB632521         C 0 C 0
s camFer1.KB018161            15989 63 -     34802 ttc-acatgaac-aaaaacacgactgtgttgcctagatgtgacccctaa----------------tgcattgttcagtctg
i camFer1.KB018161         C 0 C 0
s orcOrc1.KB316915          2922274 60 -  11690531 ttc-acattaag-aaaaacactattgtgttccctagatgtggcacctag----------------cgcgttgtacaat---
i orcOrc1.KB316915         C 0 C 0
s cerSim1.JH767738          9915476 63 +  34209287 ttc-acagtaac-gaacacgctactgtgctgcctagatgtggcacctag----------------tgcacggtacactctg
i cerSim1.JH767738         C 0 I 20
s pteAle1.KB031146          3130675 63 -   3193751 ttc-acaatcac-aaaaatgctactgtgCTTCCTGGATGTGGCACGGAG----------------TGCATGGTGCAAGCTG
i pteAle1.KB031146         C 0 C 0
e equCab2.chr29            10882259 433 +  33672925 I
e triMan1.JH594766            28225 42 +   6345240 I

a score=166302.000000
s hg38.chr8_KI270814v1_alt   134190  88 +    141812 AACT------GTA-TGACCA-TACC------TCTATTATA-TATTTAT----C----AAAGAAACTTCTGTAAG--TAAGGTTTTGCATGTCGCAGG-----GATAA----AGAATACACAT------
s panTro4.chr8             55036679  88 + 143986469 AACT------GTA-TGACCA-TACC------TCTATTATA-TATTTAT----C----AAAGAAACTTCTGTAAG--TAAGGTTTTGCATGTCACGGG-----GATAA----AGAATACACAT------
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59177303  92 + 153482349 AACT------GTA-TGACCA-TACC------TCTATTCCA-TATTTAT----CAAAGAAAGAAACTTCTGTAAG--TAAGATTTTGCATGTCACAGG-----GATAA----AGAATACACAT------
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81389518  97 - 104879549 AACT------GTA-TGAGCA-CATCTTTAA-TTTATTATA-TATTTCT----C----AAAG-GACTTCTATAGG--TTAGAGTTTGCAAGTTGCAGGAGACCAAGAT----GGAATACACAT------
i nomLeu3.chr18            C 0 C 0
s rheMac3.chr8             61701017  88 + 150158102 AACT------GTA-TGACCA-TAAC------TCTATCATA-TAGTTAT----C----AAAGAAAGTTCTGTAAG--TAAGGTTTTGCATGTTGCAGG-----GATAA----AGAATACATAT------
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58374644  88 + 146850525 AACT------GTA-TGACCA-TAAC------TCTATCATA-TAGTTAT----C----AAAGAAACTTCTGTAAG--TAAGGTTTTGCATGTTGCAGG-----GATAA----AGAATACATAT------
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53296413  88 + 139301422 AACT------GTA-TGACCA-TAAC------TCTATTATA-TATTTAT----C----AAAGAAACTTCTGTAAG--TTTATCCCTGCATGTTGCAGG-----GATAA----AGAATACATAT------
i chlSab2.chr8             C 0 C 0
s calJac3.chr7             33718218  91 + 155834243 ATCT------GTA-TGAGCA-CATCTTTAA-TTTATTAT-------AT----C----GAAG-GACTTTTATAAG--TTAGGTTTTGCAAGTTACAGGA----GACAAAGATGGAATACAAAT------
i calJac3.chr7             C 0 C 0
s saiBol1.JH378196          4073713  88 +   9144518 aacT------GTA-TGAGGA-CACTTTTAA-TTTAGTACA-TATTAAT----C----AAAG-AACTTTTATAAG--TTAAATTTTGCAAGCCACAAGT----GACAA---------ACACAT------
i saiBol1.JH378196         C 0 I 311
s otoGar3.GL873762          1572731  43 -   1847653 aacT------GTT-TGAGGA-CACC------TTTGTTTTG-CAAATGG----C----AAGA-GATTT-------------------------------------------------------------
i otoGar3.GL873762         C 0 C 0
s vicPac2.KB632521          1187197 102 -   7152218 aacT------GTG-TGAGGA-CACCTTTAA-CTTAGTAGA-CCTCGATCAAGC----AAAG-AACTTCTGGTGG--TT-GGGTTtacaagttgtaggt----gatac----aaagatggaatagacag
i vicPac2.KB632521         C 0 C 0
s camFer1.KB018161            16052 102 -     34802 aacT------GTA-TGAGGA-CACCTTTAA-CTTAGTAGA-CCTCGATCAAGC----AAAG-AACTTCTGGTGG--TT-GGGTTtacaagttgtaggc----gatac----aaagatggaatagacag
i camFer1.KB018161         C 0 C 0
s orcOrc1.KB316915          2922334  96 -  11690531 --ct------gTA-TGAGGA-CACCTCTAA-CATAGTAGA-CCTCTGTCCATC----AAAG-AACTTCTGTAGG--TT-GGTTTTACACGTTAGAGGA----GGTAC----AGAGATAAAAT----AG
i orcOrc1.KB316915         C 0 C 0
s equCab2.chr29            10882692 102 +  33672925 AACT------GTATTGAGGACCACCTTGAACCTTTGTAGGCCCTTTAT----C----CCAG-ACCTTCTGTAGAACCT-TGGTTTGCAAGTTAT--GG----GACAC----AAAGTTGGAATAGATGC
i equCab2.chr29            I 433 C 0
s cerSim1.JH767738          9915559 100 +  34209287 AACTCAGTAGGCCTTTAGCA-AACCTTGAA-CTCAGTAGG-CCTTTAG----C----AAAG-AACTTCCGAAGG--TT-AGTTTTGCAAGTTACAGGA----GACAC----AAAG-----ATAGACAC
i cerSim1.JH767738         I 20 C 0
s pteAle1.KB031146          3130738  94 -   3193751 AACT------GTA-TGAGGA-CACCTTGAG-CTTAGTAGA-TCTTGAT---------GAAA-AACTTCTGTAGG--TT-GGTTTTGCAAGTTATAGAA----AATAT----AAAATTGAAGTAGA---
i pteAle1.KB031146         C 0 C 0
e triMan1.JH594766            28225  42 +   6345240 I

a score=296785.000000
s hg38.chr8_KI270814v1_alt   134278 64 +    141812 A----GTCCGAATCTTT-AATGTGCTCATAATGCAATA-GAGCTTTCCCTATTTAATTTTCATG--TTTTTT-
s panTro4.chr8             55036767 64 + 143986469 A----GTCTGAATCTTT-AATGTGCTCATAATGCAATA-GAGCTTTCCCTATTTAATTTTCATG--TTTTTT-
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59177395 64 + 153482349 A----GTCTGAATCTTT-AATGTGCTCATAATGCAATA-GAGCTTTCCCTATTTAATTTTCATG--TTTTTT-
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81389615 57 - 104879549 A----GTCTGGGTCTTTAAAGGTGCTCATAATACATTA-GAGCTGTCTCTATTGAA----------TTTTTC-
i nomLeu3.chr18            C 0 C 0
s rheMac3.chr8             61701105 63 + 150158102 A----GTCTGAACCTTT-AATGTGCTCATAATGCAATA-GAGCTTTCCCTATTTAATTTCTGTG--TTTTT--
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58374732 63 + 146850525 A----GTCTGAACCTTT-AATGTGCTCATAATGCAATA-GAGCTTTCCCTATTTAATTTCTGTG--TTTTT--
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53296501 63 + 139301422 A----GTCTGAACCTTT-AATGTACTCATAATGCAATA-GAGCTTTCCCTATTTAATTCCTGTG--TTTTT--
i chlSab2.chr8             C 0 C 0
s calJac3.chr7             33718309 61 + 155834243 A----ATTTAGGTC-TT-AAGGTGCTCATAATGAAGTG-GAGCTGTCCCTATTGAATTTATGCA--TTTT---
i calJac3.chr7             C 0 C 0
s saiBol1.JH378196          4074112 64 +   9144518 A----GTCTTGGTCTTT-AAGGTGCTCATAATAGACTA-CAGCAGTCCTTATTTCATATCTGTG--GTTTTT-
i saiBol1.JH378196         I 311 I 342
s otoGar3.GL873762          1572774 64 -   1847653 A----GTTTTGGTCTTT-AAGGTGTTTGTAATAGAATA-GAGCTGTCCCTATGTAATTTCTGTG--TTTTTT-
i otoGar3.GL873762         C 0 C 0
s vicPac2.KB632521          1187299 65 -   7152218 a----gttttggttttc-aaggtgctcataatagaata-gagTTGTCCCTGGTTAATGTCTGTA--TTTTTTG
i vicPac2.KB632521         C 0 C 0
s camFer1.KB018161            16154 65 -     34802 a----gttttggttttc-aaggtgctcataatagaata-gagTTGTCCCTGGTTAATGTCTGTA--TTTTTTT
i camFer1.KB018161         C 0 C 0
s orcOrc1.KB316915          2922430 60 -  11690531 A----GCTTTGGTCTTC-AAGGTGCTCAT-----AATA-GAGTTGTCCCTGGTTAATTTCTGTA--TTTTTTT
i orcOrc1.KB316915         C 0 C 0
s equCab2.chr29            10882794 71 +  33672925 AATACAGTTTGGTCTTT-AAGGCGCTTATCCTAGAATA-GAATTGTCCCTGCTTAACTTCTGTCTAAATTCTC
i equCab2.chr29            C 0 C 0
s cerSim1.JH767738          9915659 62 +  34209287 AATAGAGTTTGGTCTTG-AAGGTGCTTATCATAGAATA-GAGTTGTCCCTGGTTAATTTCTTTC---------
i cerSim1.JH767738         C 0 C 0
s pteAle1.KB031146          3130832 64 -   3193751 -----GTTTTGGTTTTT-AGGGTGCTTGTAATATTGTATTTACTGTCCCTGGATTACTGTTGTG---GTTTTT
i pteAle1.KB031146         C 0 C 0
e triMan1.JH594766            28225 42 +   6345240 I

a score=19673.000000
s hg38.chr8_KI270814v1_alt   134342 6 +    141812 CAATAG
s panTro4.chr8             55036831 6 + 143986469 CAATAG
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59177459 6 + 153482349 CAATAG
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81389672 6 - 104879549 CAACTG
i nomLeu3.chr18            C 0 C 0
s rheMac3.chr8             61701168 6 + 150158102 CAATAG
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58374795 6 + 146850525 CAATAG
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53296564 6 + 139301422 CAATAG
i chlSab2.chr8             C 0 C 0
s calJac3.chr7             33718370 6 + 155834243 TACTAG
i calJac3.chr7             C 0 C 0
s otoGar3.GL873762          1572838 6 -   1847653 CAACAG
i otoGar3.GL873762         C 0 C 0
s vicPac2.KB632521          1187364 6 -   7152218 AAACAG
i vicPac2.KB632521         C 0 C 0
s camFer1.KB018161            16219 6 -     34802 AAACAG
i camFer1.KB018161         C 0 C 0
s orcOrc1.KB316915          2922490 6 -  11690531 AAATGG
i orcOrc1.KB316915         C 0 C 0
s equCab2.chr29            10882865 6 +  33672925 CCCTAG
i equCab2.chr29            C 0 C 0
s pteAle1.KB031146          3130896 6 -   3193751 AAAAAC
i pteAle1.KB031146         C 0 C 0
e triMan1.JH594766            28225 42 +   6345240 I
e cerSim1.JH767738          9915721 0 +  34209287 C
e saiBol1.JH378196          4074176 342 +   9144518 I

a score=19110.000000
s hg38.chr8_KI270814v1_alt   134348 2 +    141812 AA
s panTro4.chr8             55036837 2 + 143986469 AA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59177465 2 + 153482349 AA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81389678 2 - 104879549 AA
i nomLeu3.chr18            C 0 C 0
s rheMac3.chr8             61701174 2 + 150158102 AA
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58374801 2 + 146850525 AA
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53296570 2 + 139301422 AA
i chlSab2.chr8             C 0 C 0
s calJac3.chr7             33718376 2 + 155834243 AA
i calJac3.chr7             C 0 C 0
s saiBol1.JH378196          4074518 2 +   9144518 AA
i saiBol1.JH378196         I 342 C 0
s otoGar3.GL873762          1572844 2 -   1847653 AA
i otoGar3.GL873762         C 0 C 0
s vicPac2.KB632521          1187370 2 -   7152218 AA
i vicPac2.KB632521         C 0 C 0
s camFer1.KB018161            16225 2 -     34802 AA
i camFer1.KB018161         C 0 C 0
s orcOrc1.KB316915          2922496 2 -  11690531 AA
i orcOrc1.KB316915         C 0 C 0
s equCab2.chr29            10882871 2 +  33672925 AA
i equCab2.chr29            C 0 I 1
s pteAle1.KB031146          3130902 2 -   3193751 AA
i pteAle1.KB031146         C 0 C 0
e triMan1.JH594766            28225 42 +   6345240 I
e cerSim1.JH767738          9915721 0 +  34209287 C

a score=160498.000000
s hg38.chr8_KI270814v1_alt   134350  87 +    141812 TTGTCAAAGGAAATGCCTTTATTCATCTATCCACTT-CTCTGCGTA--GAC--------ATAACTGTAAAGTATCTTTAAGGTACT--------------------AAGCAT--TTTT--A-------------------------------------------------------------T
s panTro4.chr8             55036839  87 + 143986469 TTGTCAAAGGAAATGCCTTTATTCATCTATCCACTT-CTCTGCGTA--GAC--------ATAACTGTAAAGTATCTTTAAGGTACT--------------------AAGCAT--TTTT--A-------------------------------------------------------------T
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59177467  87 + 153482349 TTGTCAAAGGAAATGCCTTTATTCATTTATCCACTT-CTCCACGTA--CAC--------ATAACTGTAAAGTATCTTTAAGGTACT--------------------AAGCAT--TTTT--A-------------------------------------------------------------T
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81389680 144 - 104879549 TTTCCTAACTATGT-TTTTTATTCATTTATCCACTT-GTCCACTTAACAAA--------ATAACTGTCAGGTATCTTTAAGGTACT--------------------AAGCAT--CTtt--cttattatcattg-----tcattttttattatttactactttattaaggtactaagcattttt
i nomLeu3.chr18            C 0 C 0
s rheMac3.chr8             61701176  87 + 150158102 TTGTCAAAGGAAATGCCTTTATTCATTTATCCACTT-CTCCACGTA--CAC--------ATAACTGCAAAGCATCTTTAAGGTACT--------------------AAGCAT--TTCT--A-------------------------------------------------------------T
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58374803  87 + 146850525 TTGTCAAAGGAAATGCCTTTATTCATTTATCCACTT-CTCCACGTA--CAC--------ATAACTGCAAAGCATCTTTAAGGTACT--------------------AAGCAT--TTCT--A-------------------------------------------------------------T
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53296572  87 + 139301422 TTGTCAAAGGAAATGCCTTTATTCATTTATCCACTT-CTCCATGTA--CAC--------ATAACTGCAAAGCATCTTTAAGGTACT--------------------AAGCAT--TTCT--A-------------------------------------------------------------T
i chlSab2.chr8             C 0 C 0
s calJac3.chr7             33718378  84 + 155834243 TTTCCAA--AAAACGCTTTTATCCGTTTATTCACTT-GTTCACTTAA-CAA--------ATAGCTGTCAGGTATCTTTAAGGTACT--------------------AAGCGT--CTTC-----------------------------------------------------------------
i calJac3.chr7             C 0 C 0
s saiBol1.JH378196          4074520  86 +   9144518 TTTTCAAAGAAAATATTTTTATTCATTTATATACTTGGTCCATTGAA-CAA--------A---CTATCAAGTGTCTTTTAGATAGT--------------------AAGCTT--CTTTTT---------------------------------------------------------------
i saiBol1.JH378196         C 0 I 604
s otoGar3.GL873762          1572846 126 -   1847653 TTTTCAAAGAGGATATTTTTGTTTATTTATTCATTT-GTTTACTTA-------------ACAACTATCAAGTGTTTTTTAGATAAT--------------------AAGCAT--TTTT--TTTAACATTACAGAATACACACATTTAAAAAGATACAGCAGGAG-------------------
i otoGar3.GL873762         C 0 C 0
s vicPac2.KB632521          1187372  88 -   7152218 TCTTCAAAGAAAACATTCTTATTTATTTGTTAattc-atccacttaa-cag--------gtgactatcaagcgtcttttaggtact--------------------aaacaccactct-----------------------------------------------------------------
i vicPac2.KB632521         C 0 I 35
s camFer1.KB018161            16227  88 -     34802 TCTTCAAAGAAAACATTCTTATTTATTTGTTAattc-atccacttaa-cag--------gtgactatcaagtgtcttttaggtact--------------------aagcaccactct-----------------------------------------------------------------
i camFer1.KB018161         C 0 I 36
s orcOrc1.KB316915          2922498  74 -  11690531 TTTTCAAAGAACACAT--TTATTTATTTGTCCACAA-AT---------------------TAACTATCAAGTATCTTTTAGGTACT--------------------AGGCACTATTCT-----------------------------------------------------------------
i orcOrc1.KB316915         C 0 I 292
s cerSim1.JH767738          9915721  20 +  34209287 ------------------------------------------------------------------TAAATTCCCCTCTAGGAGCT-------------------------------------------------------------------------------------------------
i cerSim1.JH767738         C 0 C 0
s pteAle1.KB031146          3130904 116 -   3193751 TTTTCAAAGACAACGTTTTTTATTCTTTATTCATTA-GTCTGCTTAA-TAGTTTGCTATTTAACTATGAAGTGTCTTTTAGGTACTGTTATTTTGATGTTGCAGAATATAAACATTTT-----------------------------------------------------------------
i pteAle1.KB031146         C 0 I 27
e equCab2.chr29            10882873   1 +  33672925 I
e triMan1.JH594766            28225  42 +   6345240 I

a score=629161.000000
s hg38.chr8_KI270814v1_alt   134437 140 +    141812 CTTG------------TTACTATCATTGTCATTTT-------------------------------------------------------------TTATTATTTAC--TACCATATTCAGTGC---TTACTC--TGTCAGTTGCTTGCTGGGAGTTTAC-AATTAT---TATTTATTGTGTATTT---GTC------------ATATTTAATGTGGGACAGACAC--------------------TTTATGTCCAAGG
s panTro4.chr8             55036926 140 + 143986469 CTTG------------TTACTATCAGTGTCATTTT-------------------------------------------------------------TTATTATTTAC--TACCATATTCAGTGC---TTACTC--TGTCAGTTGCTTGCTGGGAGTTTAC-AATTAT---TATTTATTGTGTATTT---GTC------------ATATTTAATGTGGGACAGACAC--------------------TTTATGTCCAAGG
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59177554 142 + 153482349 CTTG------------TTACTATCATTGTCATTTT-------------------------------------------------------------TTATTATTTAC--TACCATATTCAGAGC---TTACTCTGTGTCAGCTGCTTGCCGGGAGTTTAT-AATTAT---TATTTATTGCGTATTT---GTC------------GTATTTAATATGGGCCAGACAC--------------------TTTATGTCCAAGG
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81389824 138 - 104879549 cttg------------ttattatcatc----tttt-------------------------------------------------------------ttattatttac--tactttattTAGTGC---TTACTCTGTGCCAGAACCCCTTTGGGAGCTTAA-AATTAT---CACTTATTATGTCGTT---ACC------------ATATTCAGTATGTGTCAGACAT--------------------TTTATATCCAACG
i nomLeu3.chr18            C 0 C 0
s rheMac3.chr8             61701263 142 + 150158102 CTTG------------TTACTATCATTGTCATTTT-------------------------------------------------------------TTATTATTTAC--TACCATATTCAGTGC---TTACTCTGTGTCAGCTGCCTGCTGGGAGTTTAC-AGTTGT---TATTTATTGTGTATTT---GTC------------ATATTTTATGTGGGCCAGACAC--------------------TTTATGTCCAAGG
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58374890 142 + 146850525 CTTG------------TTACTATCATTGTCATTTT-------------------------------------------------------------TTATTATTTAC--TACCATATTCAGTGC---TTACTCTGTGTCAGCTGCCTGCTGGGAGTTTAC-AGTTGT---TATTTATTGTGTATTT---GTC------------ATATTTTATTTGGGCCAGACAC--------------------TTTATGTCCAAGG
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53296659 142 + 139301422 CTTG------------TTACTATCATTGTCATTTT-------------------------------------------------------------TTATTATTTAC--TACCATGTTCAGTGC---TTACTCTGTGTCAGCTGCCTGCTGGGAGTTTAC-AGTTGT---TATTTATTGTGTATTT---GTC------------ATATTTTATGTGGGCCAGACAC--------------------TTTATGTCCAAGG
i chlSab2.chr8             C 0 C 0
s calJac3.chr7             33718462 198 + 155834243 CTTG------------TTATTATCATTGTCATCTTTCTAATTATTTACTATTTTATTAAGGTACTAAACATTTTTCTTTCTATTATCACCtttaaaaaattatttac--tattttatttaGTGC---TTACTTTGTGCCAGAATCCCTTTGGGAGGTTAT-AATTAT---CATTTATGTCG---TT---ACC------------ATATTCA--TTGTGTCAGACAT--------------------TTTATAAGCAAGG
i calJac3.chr7             C 0 I 1547
s saiBol1.JH378196          4075210 133 +   9144518 CTTT------------TTACAATCATTTTCATTT--------------------------------------------------------------ATGTTATTTGC--TACTTCATTCAGTGCCTTCTACTGTGTGCTAGATGCCGTCTGGAAGCGTCT-AATGAT---CATTTATTATG---TT---A-A------------ATA-------TGTGCCAGACAC--------------------TTTAAGTATGTGG
i saiBol1.JH378196         I 604 C 0
s otoGar3.GL873762          1572972 140 -   1847653 CTTG------------TTATTATAATTGTCATTT--------------------------------------------------------------TTATTATTTAC--TACTTTATTCAGTG----TTACTGTGTGCCAGATGCCCTATGGGAGCTTAT-AGTTAT---CATCTATTGCGTATTT---AGT------------GTGTTCAGTATGTGCCAAGCAG--------------------TCTGAGTTCATGG
i otoGar3.GL873762         C 0 C 0
s vicPac2.KB632521          1187495 155 -   7152218 cctggtctctaggagcgtaTTACCATCATCAGTTT-------------------------------------------------------------TTATGATTTACTCTACTTTATTCTGTGC---TTACTGTGTCCCAGA-GCCCACTAGGACTTTGT-AACTGTCTTTATGTAT----TTTTT---ATT-----------GGTATTTAATATGTGCCAGATAC--------------------TTTAAGTCCATGG
i vicPac2.KB632521         I 35 C 0
s camFer1.KB018161            16351 155 -     34802 cctggcctctaggagcttaTTACCATCATCAGTTT-------------------------------------------------------------TTATGATTTGCTGTACTATATTCTGTGC---TTACTGTGTCCCAGA-GCCCACTAGGACTTTGT-AACTGTCTTTATGTAT----TTTTT---ATT-----------GGTATTTAATATGTGCCAGATAC--------------------TTTAAGTCCATGG
i camFer1.KB018161         I 36 C 0
s orcOrc1.KB316915          2922864 146 -  11690531 CTTG------------TTATTATAATGATCA-TTT-------------------------------------------------------------TCATTATTTAGTATACTTTATTCTGTGC---TTACTATGTCCCAGA-GCCCACTAGGAGTTTATAAATTGTCTTTATGTAT----TTTTTTAAATT-----------GGTGTTTCATATATGCCAGATAT--------------------TTTAAGTCCATGG
i orcOrc1.KB316915         I 292 C 0
s equCab2.chr29            10882874 141 +  33672925 CTTATC------------ATAGTTATTGTCA-CTT-------------------------------------------------------------TTATTACTTACTTTA-----TTCAATGC---TTACTATGTGCCAGA-GCCCACTAGGATCTTAT-AGTTGTCATTATTTATTATTTTTTT---GTT-----------GGTGATTAATATGTGCCAGACAC--------------------TTTAATTCCATGC
i equCab2.chr29            I 1 C 0
s cerSim1.JH767738          9915741 110 +  34209287 --------------------TGTCATTGTCA-CTT--------------------------------------------------------------------------------------------TTACTATGTGCCAGA-GCCCGTGAGGAGCttat-aattttcattatttattattttttt---GTT-----------GGTGATTAATATGTGCCAGACAC--------------------TTTAAGTCCATGC
i cerSim1.JH767738         C 0 C 0
s pteAle1.KB031146          3131047 165 -   3193751 CTTGTC-----------TATTATCATTGTCA-TTT-------------------------------------------------------------TTATTATTTACTATACTT--TTCAGTGC---TTACTAGATTCCAGA-GCCCACTGGGAGCTTAT-AATTATTAGTGTTTATTATCTTTTT---ATT-----------GGAGTGTAATAAGTGCCAGATACTTATTACAGATACTTATTTATTTAGGTCCATGA
i pteAle1.KB031146         I 27 C 0
s triMan1.JH594766            28267 153 +   6345240 ctta------------TTGTTATCGTTGTCA-CTT-------------------------------------------------------------TTAttatttattctacttcattcagtgc---ttactatgtgccagatgcCCCCCAGGAGtttat-aattat---cat-tattatttattt---attataatatatttGGTGTTTAATATGTGCCAGACAC--------------------TTCA-GTCTATAG
i triMan1.JH594766         I 42 C 0

a score=47410.000000
s hg38.chr8_KI270814v1_alt   134577 18 +    141812 CAAAGAATTAAAGATTT-A
s panTro4.chr8             55037066 18 + 143986469 CAAAGAATTAAAGATTT-A
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59177696 18 + 153482349 CAAAGAATTAAAGATTT-A
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81389962 18 - 104879549 TGAAGAATTAAAGCTGT-A
i nomLeu3.chr18            C 0 I 342
s rheMac3.chr8             61701405 18 + 150158102 CAAATAATTAAAGATTT-A
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58375032 18 + 146850525 CAAATAATTAAAGATTT-T
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53296801 18 + 139301422 CAAAGAATTAAAGATTT-T
i chlSab2.chr8             C 0 C 0
s saiBol1.JH378196          4075343 18 +   9144518 TGAGGAATGAAAGCTAC-T
i saiBol1.JH378196         C 0 I 1
s otoGar3.GL873762          1573112 18 -   1847653 TGAGGAATTAAAGCTTT-A
i otoGar3.GL873762         C 0 C 0
s vicPac2.KB632521          1187650 17 -   7152218 TGAGGTAGGGAATTTTT--
i vicPac2.KB632521         C 0 C 0
s camFer1.KB018161            16506 17 -     34802 TGAGGAAGGGAGTTTTT--
i camFer1.KB018161         C 0 C 0
s orcOrc1.KB316915          2923010 17 -  11690531 TGAGGGATTCGAGTTTT--
i orcOrc1.KB316915         C 0 C 0
s equCab2.chr29            10883015 18 +  33672925 TGAGGAATTAGAGTTTCT-
i equCab2.chr29            C 0 C 0
s cerSim1.JH767738          9915851 18 +  34209287 TGAGGAATTCGAGTTTTA-
i cerSim1.JH767738         C 0 C 0
s pteAle1.KB031146          3131212 17 -   3193751 TGAGAACTTAGAGTTTC--
i pteAle1.KB031146         C 0 C 0
s triMan1.JH594766            28420 18 +   6345240 TGAGCAATTAAAGCTTT-A
i triMan1.JH594766         C 0 C 0
e calJac3.chr7             33718660 1547 + 155834243 I

a score=125132.000000
s hg38.chr8_KI270814v1_alt   134595 20 +    141812 AAAAGATTGGTAGGATTTAA
s panTro4.chr8             55037084 20 + 143986469 AAAAGATTGGTAGGATTTAA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59177714 20 + 153482349 AAAAGATTGGTAGGATTTAA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81390322 20 - 104879549 AAAAGTTTGGTAGTATTTAA
i nomLeu3.chr18            I 342 C 0
s rheMac3.chr8             61701423 20 + 150158102 AAAAGATTGGTAGAATTTAA
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58375050 20 + 146850525 AAAAGATTGGTAGAATTTAA
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53296819 20 + 139301422 AAAAGATTGGTAGAATTTAA
i chlSab2.chr8             C 0 C 0
s saiBol1.JH378196          4075362 20 +   9144518 AAAAGTGGGGTAGGATTTCA
i saiBol1.JH378196         I 1 C 0
s otoGar3.GL873762          1573130 20 -   1847653 CAAAAGTTGGTAGGATTTCA
i otoGar3.GL873762         C 0 C 0
s vicPac2.KB632521          1187667 20 -   7152218 TAGAAGTGGATAGGATGTCA
i vicPac2.KB632521         C 0 C 0
s camFer1.KB018161            16523 20 -     34802 TAGAAGTGGGTAGGATGTCA
i camFer1.KB018161         C 0 C 0
s orcOrc1.KB316915          2923027 20 -  11690531 AAAAAGTGCATGGACGTTAA
i orcOrc1.KB316915         C 0 C 0
s equCab2.chr29            10883033 20 +  33672925 AAAAAGTGAGTAGGATTTAA
i equCab2.chr29            C 0 I 24
s cerSim1.JH767738          9915869 20 +  34209287 AAAAAGTGGGTAGGATTTAA
i cerSim1.JH767738         C 0 C 0
s pteAle1.KB031146          3131229 20 -   3193751 AAAATGTGGGAAGGGTTTCA
i pteAle1.KB031146         C 0 C 0
s triMan1.JH594766            28438 20 +   6345240 AAAAAGTGGGTAGAATTTAA
i triMan1.JH594766         C 0 C 0
e calJac3.chr7             33718660 1547 + 155834243 I

a score=317143.000000
s hg38.chr8_KI270814v1_alt   134615 97 +    141812 GGAAAG-CATGCAGTGTAAGTAGAAGTTTTCCAGGTAAGGAGGCAGAAGAACGAAATTTGGCAAAAGGAAAATCTAACCAGATTTTGTGTTAGGCAGA
s panTro4.chr8             55037104 97 + 143986469 GGAAAG-CATGCAGTGTAAGTAGAAGTTTTCCAGGTAAGGAGGCAGAAGAACAAAATTTGGCAAAAGGAAAATCTAACCAGATTGTGTGTTAGGCAGA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59177734 97 + 153482349 GGAAAG-CATGCAGTGTAAATAGAAGTTTTCCAGGTAAGGAGGTAGAAGAACGAAATTTGGCAAAAGGAAAATCTAACCAGATTGTGTGTTAAGCAGA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81390342 97 - 104879549 GGGAAG-CAAGCTGAATGAGTAGAAGTTTTCCAGGTAAAGAGTCAGAAGGATGATATTTAGCAAAAGGAAAATTTAACCAGACTGTGTGTTTGGCAGA
i nomLeu3.chr18            C 0 C 0
s rheMac3.chr8             61701443 97 + 150158102 GGAAAG-CGTGCAGAGTAAATAGTAGTTTTCCAGGTAAGGAGGCGGAAGAACGAAATTTGGCAAAAAGAAAATCTAACCAGATTGTGTGTTAGGCAGA
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58375070 97 + 146850525 GGAAAG-CGTGCAGAGTAAATAGTAGTTTTCCAGGTAAGGAGGCGGAAGAACGAAATTTGGCAAAAAGAAAATCTAACCAGATTGTGTGTTAGGCAGA
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53296839 97 + 139301422 GGAAAG-CGTGCAGAGTAAATAGAAGTTTTCCAGGTAAGGAGGCAGAAGAACGAAATTTGGCAAAAGGAAAATCTAACCAGATTGTGTGTTAGGCAGA
i chlSab2.chr8             C 0 C 0
s saiBol1.JH378196          4075382 96 +   9144518 GGTAAG-CATGCAGAAGGGGTAGACCTTTCCTTGGTAAAGAGGCAGAAGGATGATG-TGGGCAGAAGGAACATCTAACAAGTTTGTGTTTTTGGCAGA
i saiBol1.JH378196         C 0 C 0
s otoGar3.GL873762          1573150 46 -   1847653 GGTAAG-CATGCACAGTGAGTGGAAATTTGCCAGGTAAAAAGGAAGA---------------------------------------------------
i otoGar3.GL873762         C 0 C 0
s vicPac2.KB632521          1187687 65 -   7152218 GGTAAGCCATGCAGAGCGAGTAGAAGTTTGCCAGGGAAGGAGGCAGAAGGGCAGTGATTGGTAGG---------------------------------
i vicPac2.KB632521         C 0 C 0
s camFer1.KB018161            16543 65 -     34802 GGTAAGCCATGCAGAGCGAGTAGAAGTTTGCCAGGGAAGGAGGCAGAAGGGCAGTGATTGGTAGG---------------------------------
i camFer1.KB018161         C 0 C 0
s orcOrc1.KB316915          2923047 61 -  11690531 GGTAAG-CGTGCAGAGTG---AGAAGTTTGCCAGGTAAAGAGGCAGAAGGACAGCGTTTGGCTGG---------------------------------
i orcOrc1.KB316915         C 0 C 0
s cerSim1.JH767738          9915889 38 +  34209287 ---------------------------TTGCCAGATAAAGAGGCAGAAGGGTGATGTTTGGCAGG---------------------------------
i cerSim1.JH767738         C 0 C 0
s pteAle1.KB031146          3131249 64 -   3193751 GGTAAG-CATGCAGAGGGAGCAGAAGTTTGCCAGGTAAAGAGGCAGAAGGACGACATGTGGCAGC---------------------------------
i pteAle1.KB031146         C 0 C 0
s triMan1.JH594766            28458 65 +   6345240 GGTAAG-CATACCGAGTGAGTCCAGATTTGCCAGGTGAAGAGGCAgaaggatgagggttggcagaa--------------------------------
i triMan1.JH594766         C 0 C 0
e calJac3.chr7             33718660 1547 + 155834243 I
e equCab2.chr29            10883053 24 +  33672925 I

a score=249649.000000
s hg38.chr8_KI270814v1_alt   134712 39 +    141812 AGGAACAT------------CTGACGAGATTGCATGTTTGGCAAAAGGAAC
s panTro4.chr8             55037201 39 + 143986469 AGGAACAT------------CTGACAAGATTGCATGTTTGGCAAAAGGAAC
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59177831 39 + 153482349 AGgaacat------------ctgacaagattgcatctttggcagaaggaac
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81390439 51 - 104879549 AGGAACATCTGAAGGAACACCTGACGAGGCTGCACCCTTGGCGGAAAGAAC
i nomLeu3.chr18            C 0 I 14823
s rheMac3.chr8             61701540 39 + 150158102 AGGAACAT------------CTGACAAGATTGCATGTTTGGCAGAAGGAAT
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58375167 39 + 146850525 AGGAACAT------------CTGACAAGATTGCATGTTTGGCAGAAGGAAT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53296936 39 + 139301422 AGgaacat------------ctgacaagattgcatgtttggcagaaggaac
i chlSab2.chr8             C 0 C 0
s calJac3.chr7             33720207 39 + 155834243 AGGAATAT------------CTGAGATGAGCGAACGTTCCACAGAAGAAAC
i calJac3.chr7             I 1547 I 9
s saiBol1.JH378196          4075478 39 +   9144518 AGGAACAT------------CAAACaagatggcatgcttgggagaagtagc
i saiBol1.JH378196         C 0 C 0
s otoGar3.GL873762          1573196 38 -   1847653 AGGAACAT------------CTAACAAGATTTCCTGTTCGGCAGAAAAAC-
i otoGar3.GL873762         C 0 C 0
s vicPac2.KB632521          1187752 37 -   7152218 AGGAACAT------------CTTTCAAGATTACA--TTTAACAGAAAGAAC
i vicPac2.KB632521         C 0 C 0
s camFer1.KB018161            16608 37 -     34802 AGGAACAT------------CTTTCAAGATTACA--TTTAACAGAAAGAAC
i camFer1.KB018161         C 0 C 0
s orcOrc1.KB316915          2923108 39 -  11690531 AGGAACAG------------CTATCAAGATCACATGTTTTGCAGAAAGAAC
i orcOrc1.KB316915         C 0 C 0
s cerSim1.JH767738          9915927 39 +  34209287 AGGAACAC------------CTATCCAGATTACATGGTTggcagaaagaac
i cerSim1.JH767738         C 0 C 0
s pteAle1.KB031146          3131313 39 -   3193751 AGGAACAT------------CTATCAGGATCACACGTTTGGCAGAAGCAAC
i pteAle1.KB031146         C 0 C 0
s triMan1.JH594766            28523 39 +   6345240 aggaacat------------ctaacaggagtacaaacttggcagaaggaac
i triMan1.JH594766         C 0 C 0
e equCab2.chr29            10883053 24 +  33672925 I

a score=486851.000000
s hg38.chr8_KI270814v1_alt   134751 103 +    141812 AGCAAGTACGA-----AAGGTCAGACTCTTG-AGTGAGTTTTGTAGGGTTTATGTTAAATTCAGTGTTGCTAGTGGAAATAGTGTGGTATAGGAGTTGTTGGAAATGAA
s panTro4.chr8             55037240 103 + 143986469 AGCAAGTACGA-----AAGGTCAGACTCTTG-AGTGAGTTTTGTAGGGTTTATGTTAAATTCAGTGTTGCTAGTGGAAATAGTGTGGTATAGGAGTTGTTGGAAATGAA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59177870 101 + 153482349 agcaagtacaa-----aaggtcagactcttg-agtgaatttTGTAGGGTTTATATTAAATTCAGCGTTGCTAGTGGAAATAGTGTGGTATAGGAGTTGTAG--AATGAA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81405313 103 - 104879549 AGCAAGTACAA-----ATGGTAAGATGCTTG-AGTGAACTTTGTGGAGTTTATTGGCACTTTGGGTTCCCTAGGGGAAATAGTGTGGTATGGGAGTAGTTGGGAATGAC
i nomLeu3.chr18            I 14823 C 0
s rheMac3.chr8             61701579 103 + 150158102 AGCAAATACAA-----AAGGGCAGACCCTTG-AGTGAATTTTGTAGGGTTTATGTTAAATTCAATGTTGCTAGTGGAAATAGTGTGGTATGGGAGTTGTTGGAAACGAA
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58375206 103 + 146850525 AGCAAATACAA-----AAGGGCAGACCCTTG-AGTGAATTTTGTAGGGTTTATGTTAAATTCAATGTTGCTAGTGGAAATAGTGTGGTATGGGAGTTGTTGGAAACGAA
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53296975 103 + 139301422 agcaagtacaa-----aagGTCAGACCCTTG-AGTGAATTTTGTAGGGTTTATGTTAAATTCAATGTTGCTAGTGGAAATAGTGTGGTATGGGAGTTGTTGGAAACGAA
i chlSab2.chr8             C 0 C 0
s calJac3.chr7             33720255 103 + 155834243 AGCCAGTACAA-----ATGGTAAGATGCTTG-AGTGAACTTTGTAGGGTTTATTGGCACTTCAGGTTCCCTAGTGGAAATAGTGTGATATGGGAGTAGTTGGGAATGAC
i calJac3.chr7             I 9 C 0
s saiBol1.JH378196          4075517 101 +   9144518 agcaggtgcaa-----aaggtacgaggcttg-agtgaactttgcagggtttatgagcggccctattttgctgttgcagaaa--ctgagatgagagtggttgggaatgag
i saiBol1.JH378196         C 0 C 0
s otoGar3.GL873762          1573234 108 -   1847653 AGCAGGTGGAAAAGCTAAGCTAAGAGATGTG-AGTAAACTTTGTAGGGTTTGTGAGCAGTTGGAGTCTACTAGCTCAAAAAGTGTGATATGGGAGTGATTGGGAATGAG
i otoGar3.GL873762         C 0 C 0
s vicPac2.KB632521          1187789  97 -   7152218 AGCA-GTGCAA-----AGGCTAAGATGTGCC-GGTGAACTTTGCAGGATCTATG---AGTTTCATTTTGTTGGTGCA-AAAAGATGCTG-GGGAATGGTTGAGAATGAG
i vicPac2.KB632521         C 0 C 0
s camFer1.KB018161            16645  96 -     34802 AGCA-GTGCAA-----AGGCTAAGATGTGTC-GGTGAACTTTGCAGGATCTATG---AGTTTCATTTTGTTGGTGCA-AAAAGATGCTG-GGG-ATTGTTGAGAATGAG
i camFer1.KB018161         C 0 C 0
s orcOrc1.KB316915          2923147 102 -  11690531 AGCA-GTGCAC-----AGGCTAAGATGTACG-AGTGGACTTGGCAGGATTTATGAGCAGTTCAGTTTTGCTGGTGCAGAAAGGGTGCTGTGGGGATGGTTGGTAAAGAA
i orcOrc1.KB316915         C 0 N 0
s cerSim1.JH767738          9915966  87 +  34209287 agca-atgcaa-----aggctaagatgtaca-agtgagctccacaggattaatgagtagttcaattttgctggtgcagaaaatgtgctgtggga---------------
i cerSim1.JH767738         C 0 C 0
s pteAle1.KB031146          3131352  95 -   3193751 GGCA-GTGCCG-----AGGCTAAGATGCGCA-AGTGAACTTTACAGGATTTATGAGCCGTTCAGTTTTGATGGTACAGAACACGTGCTGTGGGAGTTGTCGG-------
i pteAle1.KB031146         C 0 C 0
s triMan1.JH594766            28562 104 +   6345240 agcaggtgcag-----aggctaagatgcgtgaagtgaactttgcaggatttatgagcagtttagttttactggtacaaaaagtgtgttgtggaagtggttggaaataag
i triMan1.JH594766         C 0 C 0
e equCab2.chr29            10883053  24 +  33672925 I

a score=144019.000000
s hg38.chr8_KI270814v1_alt   134854 38 +    141812 GTGAATATCTAGATATGGCAAGCTTAGGAAAGACTTTT
s panTro4.chr8             55037343 38 + 143986469 GTGAATATCTAGATATGGCAAGCTTAGGAAAGACTTTT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59177971 36 + 153482349 GTG-ATACCTAGATATGGCAAGCTTAGG-AAGACTTTT
i ponAbe2.chr8             C 0 I 395
s nomLeu3.chr18            81405416 38 - 104879549 TTGAATGCCTAGATAAGGCAAGCTTAGGCAACACATTT
i nomLeu3.chr18            C 0 C 0
s rheMac3.chr8             61701682 38 + 150158102 GTGAATATCTTGATACGGCAAGCTTAGGAAGGACTTTT
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58375309 38 + 146850525 GTGAATATCTTGATACGGCAAGCTTAGGAAGGACTTTT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53297078 38 + 139301422 GTGAATATCTAGATATGGCAAGCTTAGGAAGGACTTTT
i chlSab2.chr8             C 0 C 0
s calJac3.chr7             33720358 37 + 155834243 TTGACTATCTAGATAA-GCAAGCTTAGACAACGCTTTT
i calJac3.chr7             C 0 C 0
s saiBol1.JH378196          4075618 38 +   9144518 ggaagaacttaggtaaggcaagctcctgatgggttttt
i saiBol1.JH378196         C 0 C 0
s otoGar3.GL873762          1573342 38 -   1847653 GTGAATACCTAGGTAAGGCAAGCTTACAGAAGATTTCT
i otoGar3.GL873762         C 0 C 0
s vicPac2.KB632521          1187886 38 -   7152218 TTGACTACCTAGCTCAGGGACGCTTCTGAAAGCCTTTC
i vicPac2.KB632521         C 0 C 0
s camFer1.KB018161            16741 38 -     34802 GTGACTACCTAGCTCAGGCACGCTTCTGAAGGCCTTTC
i camFer1.KB018161         C 0 C 0
s cerSim1.JH767738          9916053 38 +  34209287 atggtggggaaggaggtGCAAGCTTATGAAAGCCTTTT
i cerSim1.JH767738         C 0 C 0
s pteAle1.KB031146          3131447 36 -   3193751 ATGATGGCCCAGCGAAGGGATGCTTATGGGAGTC--TT
i pteAle1.KB031146         C 0 C 0
s triMan1.JH594766            28666 38 +   6345240 gtaaatacatagctaaggcaagctaatgaaagactgtt
i triMan1.JH594766         C 0 C 0
e equCab2.chr29            10883053 24 +  33672925 I

a score=1246107.000000
s hg38.chr8_KI270814v1_alt   134892 311 +    141812 GAATAGTATAGAACGGAGTAGATCTTATTCAGTAGGCCATTGAAAAGTTCCC----A----GAATACATCTGGCTGTA---AATACTAGATGACCTAACTAACAATGGCTAAAACCATAGGCACCAAAG--TTGTTCTGTT------GGTTCAGGGATATCAT-AGTGTCACATGTATGTTTCCT---TTTTTAGCTGTGCTATTGGCAGTATTTTGTTAATGTCTCTTTTCATGGTTGGCTAAGTAGCCAATGAGTAG--CCAGTCGTTATGTTCTCTCAAGACAATATCTGAAGGCTGGAAGGGTTGCTTTGTTT--CATGatttttttgtttgtt
s panTro4.chr8             55037381 311 + 143986469 GAATAGTATAGAACGGAGTAGATCTTATTCAGTAGGCCATTGAAAAGTTCCC----A----GAATACATCTGGCTATA---AATACTAGATGACCTAACTAACAATGGCTAAAACCATAGGCACCAAAG--TTGTTCTGTT------GGTTCAGGGATATCAT-AGTGTCACATGTATGTTTCCT---TTTTTAGCTGTGCTATTGGCAGTATTTTGTTAATGTCTCTTTTCATGGTTGGCTAAGTAGCCAATGAGTAG--CCAGTCATTATGTTCTCTCAAGACAATATCTGAAGGCTGGAAGGGTTGCTTTGTTT--CATGATTTTTTTGTTTGTT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59178402 310 + 153482349 GAATAGTATAGAAAGGAATAGATCTTATTCAGTAGGCCA-TGAAAAGTTCCC----A----GAATACATCTGGCTGTA---AATACTAGATGACCTAACTAACAATGGCTAAAACCATAGGTACCACAG--TTGTTCTGTT------GGTTCAGGGATATCAT-AGTTTCACGCGTATGTTTCCT---TTTTTAGCTGTGCTACTGGCAGTATTTTGTTAGTATCTCTTTTCATGGTTGGCTAAGTAGCCAATGAGTAG--CCAGTCATTATGTTCTCTCAACACAATATCTGAAGGCTGGAAGGGTTGCTTTGTTT--CATGATTTTTTTGTTTGTT
i ponAbe2.chr8             I 395 C 0
s nomLeu3.chr18            81405454 304 - 104879549 TAATAGTGTAGAAATGAGTAGATTTTATTCTGTAGGCCCTGGAAAAATTCTC----A----GAATACTTCTAGCTGTA---AATATTAGATGAACTAACTAACAATTGCTAAAACCATAGAAACCAAAG--TTGTTTTGGT------GGTACAGGGATTTTAT-AGGATCTCACTCCCCCCCCCCCCATTATTAGTTGTAGTATCAGCAGTGTTTTGTTCATGTCTCCTTTCTTGGTTGGCTAATTAgc-----aacagctccaatcatcatgttatctcaagacaatatctgaaggctaggagggctgcttttgtt--cacatttttttt-------
i nomLeu3.chr18            C 0 C 0
s rheMac3.chr8             61701720 309 + 150158102 GATTAGTATATAAAGAAGTAGATCGTATTCAGTAGGCCATGGAGGAGTTCCC----A----GAATATATCTGGCTGTA---AATACTAGATGACCTAACTAACAATGGCTAAAACCATAGGCACCAAAG--TTGTTCTGTT------GGTTCAGGGATATCAT-AGTGTTACATGTATGTTTCCT---TTTTCAGCTGTGCTCTTGGCAGTATTTTGTTAATGTCTCTTTTCATGGTTAGCTAAGTAGCCAATGAGTAG--CCAGTCATTATGTTCTCTCAAGACAGTATCTGAAGGCTGGAAGGGTTTCTTTGTTT--CATGATTTTTTG--TTTGT
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58375347 309 + 146850525 GATTAGTATATAAAGAAGTAGATCTTATTCAGTAGGCCATGGAGGAGTTCCC----A----GAATATATCTGGCTGTA---AATACTAGATGACCTAACTAACAACGGCTAAAACCATAGGCACCAAAG--TTGTTCTGTT------GGTTCAGGGATATCAT-AGTGTCACATGTATGTTTCCT---TTTTCAGCTGTGCTCTTGGCAGTATTTTGTTAATGTCTCTTTTCATGGTTAGCTAAGTAGCCAATGAGTAG--CCAGTCATTATGTTCTCTCAAGACAGTATCTGAAGGCTGGAAGGGTTTCTTTGTTT--CATGATTTTTTG--TTTGT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53297116 309 + 139301422 GATTAGTATATAAAGAAGTAGATCTTATTCAGTAGGCCATGGAGGAGTTCCC----A----GAATATATCTGGCTGTA---AATACTAGATGACCTAACTAACAACAGCTAAAACCATAGACACCAAAG--TTGTTCTGTT------TGTTCAGGGATATCAT-AGTGTCACATGTATGTTTCCT---TTTTCAGCTGTGCTCTTGGCAGTATTTTGTTAATGTCTCTTTTCATAGTTAGCTAAGTAGCCAATGAGTAG--CCAGTCATTATGTTCTCTCAAGACAGTATCTGAAGGCTGGAAGGGTTTCTTTGTTT--CATGATTTTTTG--TTTGT
i chlSab2.chr8             C 0 C 0
s calJac3.chr7             33720395 281 + 155834243 TAATAGTATAGAAATGAGTAGATCTTATTCTGTAGAACCTGGAAAAATTCTC----A----GAATACTTCTAGCTCTA---AACACTAGACGAACTAACTAACAATGGCTGAAAGCATAGGAACCGAAT--TTGTTTTGGT------GGTACAGGGATATCTT-AGTATCCCA-------CTCCC---CTCCCCACTGCCCTATTTGT---------------TCTCCTTTCATGGCTGGCTAATTAGC-----AATAGCTACAATCAACATGCTTTCTCAAGGTAATATCTGAAGGCTGGAAGTGCTGCTTTTGTTCACATGCATCtttt-------
i calJac3.chr7             C 0 C 0
s saiBol1.JH378196          4075656 311 +   9144518 taatactataaaactgagtagatcttatcctgcaggctatgggaaatttacc----aggtggagtgctttgggcTGCA---AATACCGAAGGACCTGACTAACAGTGACCAAAACAGTAGGAAGCGGAG--TTGCTTTGGTGGCc--ggttcaatagtaacac-tgggtcccatttggtcttcct---gtttcagctgtgctgttggcagtgttttgttcatgtctcctttcatggctggctaattagc-----agtagctccaaacatcatgttctcacaatacaatttctgaaggctggaagggctgcatttctttccatgtttctttg-------
i saiBol1.JH378196         C 0 C 0
s otoGar3.GL873762          1573380 303 -   1847653 TAATACTCCAGAAATGGGTAGCTCTTGTCCCATAAGCCACAGGAACTTTCTC----AGGTAGAATGCTTTTGGCTGTC---AAAGATAGATCACATGAAGAACAGTGGCTGAAACAATAGGAACCAGAG--TTATTTGGGGGAGAGGGGTTCATTGATAGCAT-TTGATTCAGCTTGTTTGtctt---ccct---ctgtgccactggccgtgttttgttcatgtct--tttcatggttgactcaattgc-----agcaggtccaaatatcatgttctcacacgaccttatctaaaggctgcaagggtt---tttctt--catgtgtttctt-------
i otoGar3.GL873762         C 0 C 0
s vicPac2.KB632521          1187924 291 -   7152218 TAGTACTATAGAA---AGGAGGTGGTCTGCTGTAGACCTTGGGAAATTTATC----A----GAATGCTTTTAGCTGCAAATAATAATAGGAGACCTAAGTTACAGTGGCTACAAC---AGGAGCCAGGA--TTGTGTAGAA------ggttcagtgatgtcatcaggatcccagatggtgtccct---ccttcagctgtgaggctgctggtgt----ttaatgtctccttttctggtctcctgattggc-----agcagctccaagcatcatattctcacatgacaatatccaaagactgggagggctgcttttctctacatgtc-------------
i vicPac2.KB632521         C 0 C 0
s camFer1.KB018161            16779 294 -     34802 TAGTACTATAGGAAGGAGGAGGAGGTCTGCTGTAGACCTTGGGAAATTTATC----A----GAATGCTTTCAGCTGCAAATAATAATAGGAGACCTAAGTTACAGTGGCTACAAC---AGGAGccaggg--ttgtttagaa------ggttcagtgatgtcatcaggatcccagatgatgtcctg---ccttcagctgtgaggttgctggtgt----ttaatgtctcctttcctggtctcctgattggc-----agcagctccaagcatcatattctcacatgacagtatccaaagactgggaaggctgcttttctctacatgtc-------------
i camFer1.KB018161         C 0 C 0
s cerSim1.JH767738          9916091 311 +  34209287 TGGTATTGGAGAAAGGAGCAGATCTTATCCTGTAGACCTTGGGAAAT-tatcagtta----gaatgcttttagctgaa---aataataggtgacctaaataaaggtggctaacataa-aggaaccagga--ttgttttggt------ggttcagcgacgtcatgaggatcccaggtgccgtcctt---ctttcagctgtcaggttggcagtgttttgtttatgtctcctttcctggtctgctaattagc-----aacagctccatgcctcatatttccatatgacaatatctaaaggctggagggtctgcttttctttacatgattctttt--tttTT
i cerSim1.JH767738         C 0 I 254
s pteAle1.KB031146          3131483 306 -   3193751 TAGTACCAAAGAAAAGAAGAAGTCTTATTCTGTAGGCCTTAGGGAATGCATCACATA----GAATGCTTTTAGCTGCA---GACAATAGGTGACCGAATGAACAGTGGCTAAAACAATAGCAAGTGGGA-----TTTTGAT------GGTTCAGTGATGCTGTCAGGATCCCCGTTGTTGTCCCC---ATTTCAGATGTGAGGTTGTCAGTGTTTTGTTTATGTCTCCTGTCCTGGTCTGCTAATTAGC-----AACGACTCCAAGCATCATATT---ATGGGACAATATCCAAAGGCCAGAGGA-CCGCTTTCCTTTAGGTGTTTTTTTT--TCTTT
i pteAle1.KB031146         C 0 C 0
s triMan1.JH594766            28704 283 +   6345240 taataccgtagaaaggactCGATCTTATCCTTTAGTACATTGAAG-TTtatcagtta----gaatgcctttgactgca---aataatagatgacctaactagcagtggcttacacagtaggaaCCAGAGAGTTGTTTCGGT------GGCTCAGGATTGTCAT-TAAGATCCAGGGGTTTTCCTT---CTTTGAGCTGTTCTGCTGTCAGTGTTTT-----------CGTTCATAGTcggct-------------------ccaaaaattatgttcttgcatgacaatatccaaaggctggaagaactgcttttcttgacatgtttctttt-------
i triMan1.JH594766         C 0 C 0
e equCab2.chr29            10883053  24 +  33672925 I

a score=4543.000000
s hg38.chr8_KI270814v1_alt   135203 4 +    141812 ttta
s panTro4.chr8             55037692 4 + 143986469 TTTA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59178712 4 + 153482349 TTTA
i ponAbe2.chr8             C 0 C 0
s rheMac3.chr8             61702029 4 + 150158102 TTTA
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58375656 4 + 146850525 TTTA
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53297425 4 + 139301422 TTTA
i chlSab2.chr8             C 0 C 0
s otoGar3.GL873762          1573683 1 -   1847653 ---a
i otoGar3.GL873762         C 0 C 0
s vicPac2.KB632521          1188215 3 -   7152218 -ttc
i vicPac2.KB632521         C 0 I 1
s camFer1.KB018161            17073 3 -     34802 -ttc
i camFer1.KB018161         C 0 I 1
s pteAle1.KB031146          3131789 2 -   3193751 --TA
i pteAle1.KB031146         C 0 I 4
e calJac3.chr7             33720676 0 + 155834243 C
e nomLeu3.chr18            81405758 0 - 104879549 C
e equCab2.chr29            10883053 24 +  33672925 I
e triMan1.JH594766            28987 0 +   6345240 C
e cerSim1.JH767738          9916402 254 +  34209287 I
e saiBol1.JH378196          4075967 0 +   9144518 C

a score=-6997.000000
s hg38.chr8_KI270814v1_alt   135207 6 +    141812 ttttt-a
s panTro4.chr8             55037696 6 + 143986469 TTTTT-A
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59178716 6 + 153482349 TTTTT-A
i ponAbe2.chr8             C 0 C 0
s rheMac3.chr8             61702033 6 + 150158102 TTTTC-A
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58375660 6 + 146850525 TTTTC-A
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53297429 6 + 139301422 TTTTC-A
i chlSab2.chr8             C 0 C 0
s otoGar3.GL873762          1573684 1 -   1847653 t------
i otoGar3.GL873762         C 0 C 0
s vicPac2.KB632521          1188219 3 -   7152218 --ttt--
i vicPac2.KB632521         I 1 C 0
s camFer1.KB018161            17077 3 -     34802 --ttt--
i camFer1.KB018161         I 1 C 0
s cerSim1.JH767738          9916656 5 +  34209287 ctttt--
i cerSim1.JH767738         I 254 C 0
s pteAle1.KB031146          3131795 6 -   3193751 TTttta-
i pteAle1.KB031146         I 4 N 0
e calJac3.chr7             33720676 0 + 155834243 C
e nomLeu3.chr18            81405758 0 - 104879549 C
e equCab2.chr29            10883053 24 +  33672925 I
e triMan1.JH594766            28987 0 +   6345240 C
e saiBol1.JH378196          4075967 0 +   9144518 C

a score=150004.000000
s hg38.chr8_KI270814v1_alt   135213 28 +    141812 aaacagggagccaactcagaagtttgca
s panTro4.chr8             55037702 28 + 143986469 AAACAGGGAGCCAActcagaagttttca
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59178722 28 + 153482349 AAACAGGGAGCCAACTCAGAAGTTTGCA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81405758 28 - 104879549 aaataggaagaaaacttggaagcttgca
i nomLeu3.chr18            C 0 C 0
s rheMac3.chr8             61702039 28 + 150158102 AAACAGGGAGCCAACTCAGAAGTTTGCA
i rheMac3.chr8             C 0 I 9
s macFas5.chr8             58375666 28 + 146850525 AAACAGGGAGCCAACTCAGAAGTTTGCA
i macFas5.chr8             C 0 I 9
s chlSab2.chr8             53297435 28 + 139301422 AAACAGGGAGCCAACTCAGAAGTTTTCA
i chlSab2.chr8             C 0 I 9
s calJac3.chr7             33720676 28 + 155834243 aaataggaagaaaacttggaatcttgtg
i calJac3.chr7             C 0 C 0
s saiBol1.JH378196          4075967 28 +   9144518 aaatagagagaaaagtcaaaagcttgca
i saiBol1.JH378196         C 0 C 0
s otoGar3.GL873762          1573685 28 -   1847653 aaagagggagaaaattcagaagcttgga
i otoGar3.GL873762         C 0 C 0
s vicPac2.KB632521          1188222 28 -   7152218 aaataagaagaaaatcaagaagctgaca
i vicPac2.KB632521         C 0 C 0
s camFer1.KB018161            17080 27 -     34802 -aataggaagaaaatcaagaagctgaca
i camFer1.KB018161         C 0 C 0
s cerSim1.JH767738          9916661 28 +  34209287 aaataggaagaaaactcagaagcttgca
i cerSim1.JH767738         C 0 C 0
s triMan1.JH594766            28987 28 +   6345240 aaatagggagtaaactcagaaacttgca
i triMan1.JH594766         C 0 C 0
e equCab2.chr29            10883053 24 +  33672925 I

a score=194930.000000
s hg38.chr8_KI270814v1_alt   135241 67 +    141812 gtgatcttcctgtaacactttagtggccgga-tgacaccacatgctcattcctaaaccagtcagtagg
s panTro4.chr8             55037730 67 + 143986469 gtgatcttcctgtaacactttagtggccaga-tgacaccacatgctcattcctaaaccagtcagtagg
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59178750 67 + 153482349 GTGATcttcctgtaacactttagtggctgaa-tgacaccacatgctcattcctaaatcagtcagtagg
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81405786 67 - 104879549 gtaatcttcctgtaacattttattggctgga-ttataccacatgcttatttttataccaatcactagg
i nomLeu3.chr18            C 0 C 0
s calJac3.chr7             33720704 67 + 155834243 gtaatcttcctgtaacatttcattgcctgga-ttataccacatgctcatttgtaaaccagtcactagg
i calJac3.chr7             C 0 C 0
s saiBol1.JH378196          4075995 67 +   9144518 gtgggctttctttcacattttattggcttgg-ttacaccacatactcattcctaaaccaggcactggg
i saiBol1.JH378196         C 0 C 0
s otoGar3.GL873762          1573713 66 -   1847653 gtagacctcaagcaacattttattgactggg-ttatactacatgctcatttctaagctagccatggg-
i otoGar3.GL873762         C 0 C 0
s vicPac2.KB632521          1188250 66 -   7152218 gtagacttcccccagca-tttattggctggg-ttacatcacatgctcattcctaagccagtcactggg
i vicPac2.KB632521         C 0 C 0
s camFer1.KB018161            17107 67 -     34802 gtagacttcccccagcattttattggctggg-ttacatcacatgctcattcctaagccagtcactggg
i camFer1.KB018161         C 0 C 0
s cerSim1.JH767738          9916689 65 +  34209287 ggagactt-ccctaacattttactgactagg-ctacatcacatcctcatt-ctaaaccagccactggt
i cerSim1.JH767738         C 0 C 0
s triMan1.JH594766            29015 68 +   6345240 tcagacttcccgtaacattttatttgctgagtttacatcacatactcattcctaagccaggcgctagt
i triMan1.JH594766         C 0 C 0
e equCab2.chr29            10883053 24 +  33672925 I
e rheMac3.chr8             61702067  9 + 150158102 I
e macFas5.chr8             58375694  9 + 146850525 I
e chlSab2.chr8             53297463  9 + 139301422 I

a score=203859.000000
s hg38.chr8_KI270814v1_alt   135308 56 +    141812 aaaacaaacgtaattcctatgattagcttagaacaatcattt--------ttcttttttttttt
s panTro4.chr8             55037797 57 + 143986469 aaaacaaacataattcctatgattagcttagaacaatcaTTTC-------TTTCTTTTTTTTTT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59178817 64 + 153482349 aaaacaaatgtaattcctatgattagtttagaacaatcatttcttttttttttttttttttttt
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81405853 48 - 104879549 aaaacaaatgtaattactgtgattagcttagaataatgattt----------------ttcttt
i nomLeu3.chr18            C 0 C 0
s rheMac3.chr8             61702076 56 + 150158102 AAGATCAATGTAATTCCTATGATTAGCTTAGAATAATCATTT--------CTTTTTTTTTTTTT
i rheMac3.chr8             I 9 I 1
s macFas5.chr8             58375703 56 + 146850525 AAGATCAATGTAATTCCTATGATTAGCTTAGAATAATCAttt--------cttttttttttttt
i macFas5.chr8             I 9 I 105
s chlSab2.chr8             53297472 55 + 139301422 AAGATCAATGTAATTCCTATGATTAGCTTAGAATAATCATTT--------CTTTTTTTTTTTT-
i chlSab2.chr8             I 9 C 0
s calJac3.chr7             33720771 50 + 155834243 aaagcatatgtaattactgtgattagcttacaataatGATTT--------CTTTTTTT------
i calJac3.chr7             C 0 C 0
s saiBol1.JH378196          4076062 49 +   9144518 aaaacatacgtaatgattgtgattagattagaacagtcattt--------c-tcttgt------
i saiBol1.JH378196         C 0 C 0
s otoGar3.GL873762          1573779 45 -   1847653 aaagcagagatgattattctgattagcttcaaagaatcaCTT--------TTT-----------
i otoGar3.GL873762         C 0 C 0
s vicPac2.KB632521          1188316 49 -   7152218 aaaggaaatgtagttactgtgatgaccttaggataatcattt--------ctctttt-------
i vicPac2.KB632521         C 0 C 0
s camFer1.KB018161            17174 49 -     34802 aaaggaaatgtagttactgtgatgaccttaggataatcattt--------ctctttt-------
i camFer1.KB018161         C 0 C 0
s cerSim1.JH767738          9916754 49 +  34209287 aaaggaaatgtgattactgtggttagcttagaataatcatct--------ctctttt-------
i cerSim1.JH767738         C 0 C 0
s triMan1.JH594766            29083 49 +   6345240 aaaggaaatctatttactctgatttgcttagaataataattt--------ctctttt-------
i triMan1.JH594766         C 0 C 0
e equCab2.chr29            10883053 24 +  33672925 I

a score=796889.000000
s hg38.chr8_KI270814v1_alt   135364 181 +    141812 tggaactgaggtg------------------ggataat-ggaatgataagtatccaaat-aaacttgtgtttctccagtga-ga---aagaagga---agaatggcca-t--agatagggagccaGTGAGGTTTTCTGCAGGGATTCATGGGAAGATTTTGGGCAGGGGAGTCACAAGAGGAGGTGTGAGTATTAGGGCATTCTGGTTACG
s panTro4.chr8             55037854 181 + 143986469 TGGAACTGAGGTG------------------GGATAAT-GGAATGATAAGTATCCAAAT-AAACTTGTGTTTCTCCAGTGA-GA---AAGAAGGA---AGAATGGCCA-T--AGATAGGGAGCCAGTGAGGTTTTCTGCAGGGATTCATGGGAAGATTTTGGGCAGGGGAGTCACAAGAGGAGGTGTGAGTATTAGGGCATTCTGGTTACG
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59178881 181 + 153482349 tGGAACTGAGGTG------------------GAATAAT-GGAATGATAATTATCCGAAT-AAACTTGTGTTTCTCCAGTGA-GA---AAGAAGGA---AGAACGGCCA-T--GGATAGGGAGCCAGTGAGGTTTTCTGCAGGGATTCATGGGAAGATTTTGGGCAGGGGAGTCACAAGAGGAGGTGTGAGTATTAGGGCATTCTGGTTACG
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81405901 181 - 104879549 taagattggatgg------------------gggTAAT-GGAATAATAAATATCTAAAT-GAACTTGTGTTTCTGCAGCAA-TA---AAGAATAA---ATAATGACTA-T--GCATAGGAAGCCAGCAATGTTTTCTGCAGGAATTCAGTGGAAAAGTTTGAGCAGGGGAGTCACAAGATTAGATTTGAGTATCAGGGCATTCTGGTCATG
i nomLeu3.chr18            C 0 C 0
s rheMac3.chr8             61702133 181 + 150158102 TGGAACTGAGGTG------------------GGATAAT-GGAATGATAAATATTCAAAT-AAATTTGTGTTTCTCCAGTGA-GA---AAGAAGAA---AGAATAGTCA-T--GGATAGGGAGCCAGTGAGGTTTTCTGCAGGGATTCATGCAAAGATTTTGGGTAGGGGGGGCCCAAGAGGAGGTGTGAATATTAGGGCATTCTGGTTACG
i rheMac3.chr8             I 1 C 0
s macFas5.chr8             58375864 181 + 146850525 TGGAACTGAGGTG------------------GGATAAT-GGAATGATAAATATTCAAAT-AAATTTGTGTTTCTCCAGTGA-GA---AAGAAGAA---AGAATAGTCA-T--GGATAGGGAGCCAGTGAGGTTTTCTGCAGGGATTCATGCAAAGATTTTGGGTAGGGGGGCCCCAAGAGGAGGTGTGAGTATTAGGGCATTCTGGTTACG
i macFas5.chr8             I 105 C 0
s chlSab2.chr8             53297527 181 + 139301422 TGGAACTGAGGTG------------------GGATAAC-GGAATGATAAATATTCAAAT-AAATTTGTGTTTCTCCAGTGA-GA---AAGAAGAA---AGAATAGTCA-T--GGATAGGGAGCCAGTGAGGTTTTCCACAGGGATTCATGGGAAGATTTTGGGCAGGGGAGTCACAAGAGGAGGTGTGAGTATTAGGGCATTCTGGTTACG
i chlSab2.chr8             C 0 C 0
s calJac3.chr7             33720821 181 + 155834243 TGGAGATGGGATG------------------GGGCAAT-GGAATGATAAATATCTAAAT-AAACTTATGTTTCTGCAGCAA-GA---AAGAATAA---ATAGTGGCTA-T--GCATACAAAGCCAGAAACATTTTCTGCAGGCATTCATTGGAAAAGTTTGAGCAGGGGAGTCACAAGATTAGATTTGAGTATCAGGGCATTTTAGTCATG
i calJac3.chr7             C 0 C 0
s saiBol1.JH378196          4076111 184 +   9144518 tgaggatggggag------------------ggatatt-aggatgataaatactcaaat-agacttgtggttctccagcaagga---aaaaataa---gaaatggtca-ttaggttgggagacagcaAATGTTCTCTGTAGGAATTCATTATAGAATTGTGAGAACAGAAGTGACAAGATTATATTTGGGTATTAGAACATTCTGATTATG
i saiBol1.JH378196         C 0 C 0
s otoGar3.GL873762          1573824 181 -   1847653 TGGAGCTGTGAAG------------------GGGTATT-CAGATGATAAatatccaact-agaattatgtttctacagcaa-ga---aagaagaa---ggaatggctact--ggggaggaagccagcattgtttactgcaGGGATTCAT-CGAGAATTTTAGGTAGAGGAGCCACAAGATTGGGTTTGAGGTTTAGGGCATTCTGGTTAGG
i otoGar3.GL873762         C 0 C 0
s vicPac2.KB632521          1188365 190 -   7152218 tggagctggagag----aggtcacctta-ttgtatatc-gggacaaaaaacatcc------aagttacaattatctagcaa-gaatgaaggagaa---ggaatggttggt--gggttgggagccagcaatatctgctgcaAGGATTcactggagaactttgagcaggggag---caagattagatttgagtcttagggctctctggttatt
i vicPac2.KB632521         C 0 C 0
s camFer1.KB018161            17223 195 -     34802 tggagctggagag----aggtcacctta-ttgtatatt-gggacaaaaaacatccaagt-aaagttgcaattgtctagcaa-gaatgaaggagaa---ggaatggttggt--gggttgggagccagcagtatttgctgcaAGGATTcactggggaactttgagcagaggag---taagattagatttgagtcttagggctctctggttatt
i camFer1.KB018161         C 0 C 0
s cerSim1.JH767738          9916803 204 +  34209287 tagagctggggagagacaggccaccttctttgtgtatt-gggacaataaatacccaaataaaagttgtgattctccagcaa-gaatgaagaataa---ggaatggctatt--gggtagagaaccagccacgtttgctgcagggattcattggagaattttgagcagaagagtaacaagattagatttgaggattagggcactctggttatg
i cerSim1.JH767738         C 0 C 0
s triMan1.JH594766            29132 192 +   6345240 tggagctgtggag----gggccaccttctttgagtactgggaatgatccatgtctaatc-agaagtgtggttctccagcaa-ga---aagaagagtatggaataactctt--gggtagggagccagcactgtttgctgcaGGGATTCGTGGAAGAGTTTAGAGCAGCAGAGTAACAAAATGAGATTTGA--------GCACTATGGTTATG
i triMan1.JH594766         C 0 C 0
e equCab2.chr29            10883053  24 +  33672925 I

a score=204239.000000
s hg38.chr8_KI270814v1_alt   135545 41 +    141812 GTATAAAGcagggattggcaagcttttcctgtaaagggcca
s panTro4.chr8             55038035 41 + 143986469 GTATAAAAcagggattggcaagcttttcctgtaaagggcca
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59179062 41 + 153482349 GTATAAAGTagggattggcaagctttttctgtaaagggtca
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81406082 41 - 104879549 GTATAAAGcagagattggcaaacttttcctgtaaagtgcca
i nomLeu3.chr18            C 0 C 0
s rheMac3.chr8             61702314 41 + 150158102 ATATAAAGTagggattggcaagcttttcctgtaaagggcca
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58376045 41 + 146850525 ATATAAAGTagggattggcaagcttttcctgtaaagggcca
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53297708 41 + 139301422 ATATAAAGTagggattggcaggcttttcctgtaaagggcca
i chlSab2.chr8             C 0 C 0
s calJac3.chr7             33721002 41 + 155834243 GTATAAAGcagaaattggcaaacttttcctgtaaagggcca
i calJac3.chr7             C 0 I 8152
s saiBol1.JH378196          4076295 30 +   9144518 GT-----------ATTCATaagcttcttacgtaaaggacca
i saiBol1.JH378196         C 0 C 0
s vicPac2.KB632521          1188555 41 -   7152218 TCATAAAGcagagatctacaagctttttctgtaaagggcca
i vicPac2.KB632521         C 0 C 0
s camFer1.KB018161            17418 41 -     34802 TCATAAAGcagagatctacaagctttttctgtaaagggcca
i camFer1.KB018161         C 0 C 0
s cerSim1.JH767738          9917007 41 +  34209287 ggatgaagcagggatcagcatgctttttatggaaagggcca
i cerSim1.JH767738         C 0 C 0
s triMan1.JH594766            29324 41 +   6345240 GTAGCAAGcaggaattagcaagctttttctgtaaaggacca
i triMan1.JH594766         C 0 C 0
e equCab2.chr29            10883053 24 +  33672925 I
e otoGar3.GL873762          1574005  0 -   1847653 C

a score=16184.000000
s hg38.chr8_KI270814v1_alt   135586 6 +    141812 catagc
s panTro4.chr8             55038076 6 + 143986469 gatagc
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59179103 6 + 153482349 gacagc
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81406123 6 - 104879549 gatagc
i nomLeu3.chr18            C 0 C 0
s rheMac3.chr8             61702355 6 + 150158102 gatagc
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58376086 6 + 146850525 gatagc
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53297749 6 + 139301422 gatagc
i chlSab2.chr8             C 0 C 0
s saiBol1.JH378196          4076325 6 +   9144518 ggtggg
i saiBol1.JH378196         C 0 C 0
s vicPac2.KB632521          1188596 6 -   7152218 gagagt
i vicPac2.KB632521         C 0 C 0
s camFer1.KB018161            17459 6 -     34802 gagagt
i camFer1.KB018161         C 0 C 0
s triMan1.JH594766            29365 6 +   6345240 ggtagt
i triMan1.JH594766         C 0 C 0
e calJac3.chr7             33721043 8152 + 155834243 I
e equCab2.chr29            10883053 24 +  33672925 I
e cerSim1.JH767738          9917048 0 +  34209287 C
e otoGar3.GL873762          1574005 0 -   1847653 C

a score=165709.000000
s hg38.chr8_KI270814v1_alt   135592 78 +    141812 acacatttctaggccttgtggtctctgttgtatgttttcaaccctttcacgctgttgcagtgtgaaaggagtcagaaa
s panTro4.chr8             55038082 78 + 143986469 acacatttctaggccttgtggtctctgttgtatgttttcaaccctttcacgctgttgcagtgtgaaaggagtcagaaa
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59179109 73 + 153482349 aaacatttctaggccttgtggtctctgttgtatgttttcaaccct-----gctgttgcagtgtgaaaggagtcagaaa
i ponAbe2.chr8             C 0 C 0
s rheMac3.chr8             61702361 73 + 150158102 aaacatttctaggtcttgtagtctctgttgtatgttttcaaccct-----gttgttgcggtgtgaaaggagtcagaaa
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58376092 73 + 146850525 aaacatttctaggtcttgtagtctctgttgtatgttttcaaccct-----gttgttgcagtgtgaaaggagtcagaaa
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53297755 73 + 139301422 aaacatttctgggtcttgtagtctctgttgtatgttttcaaccct-----gttgttgcagtgtgaaaggagtcagaaa
i chlSab2.chr8             C 0 C 0
s saiBol1.JH378196          4076331 72 +   9144518 aaatactt-taggcctcgtggtctctgccatatctactcaaccct-----gccattgtagtgtaaaagcagtcataaa
i saiBol1.JH378196         C 0 N 0
s vicPac2.KB632521          1188602 67 -   7152218 ccatattt-gaggccatgtagtatctgtc-----tacttaactct-----gccactttggtgtgaacgcagctgaagc
i vicPac2.KB632521         C 0 C 0
s camFer1.KB018161            17465 67 -     34802 ccatattt-gaggccatgtagtatctgtc-----tactcaactct-----accactttggtgtgaaagcagctgaagc
i camFer1.KB018161         C 0 C 0
s triMan1.JH594766            29371 72 +   6345240 caatattt-taggctttgcggtctctgtcatatctactcagcttt-----gtcgtagtagtgcgaaaacagtcataga
i triMan1.JH594766         C 0 C 0
e calJac3.chr7             33721043 8152 + 155834243 I
e nomLeu3.chr18            81406129  0 - 104879549 C
e equCab2.chr29            10883053 24 +  33672925 I
e cerSim1.JH767738          9917048  0 +  34209287 C
e otoGar3.GL873762          1574005  0 -   1847653 C

a score=96886.000000
s hg38.chr8_KI270814v1_alt   135670 42 +    141812 taatatggaagcaaatagacatgattgtgctccagtaaagct
s panTro4.chr8             55038160 42 + 143986469 taatatggcagcaaataggcatgattgtgctccagtaaagct
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59179182 42 + 153482349 taatgtggaagcaaataggcaagattgtgctccagtaaagct
i ponAbe2.chr8             C 0 C 0
s rheMac3.chr8             61702434 42 + 150158102 taatatggaagcaaataggcacatttgtgctccagtaaagct
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58376165 42 + 146850525 taatatggaagcaaataggcacatttgtgctccagtaaagct
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53297828 42 + 139301422 taatatggaagcaaataggcacatttgtgttccagtaaagct
i chlSab2.chr8             C 0 C 0
s vicPac2.KB632521          1188669 42 -   7152218 cagtatgtgagcaaatagggatgactgtgctccgataacact
i vicPac2.KB632521         C 0 N 0
s camFer1.KB018161            17532 42 -     34802 cagtatgtgagcaaatagggatggctgtgctccgataacact
i camFer1.KB018161         C 0 N 0
s triMan1.JH594766            29443 42 +   6345240 agataagtgaacaaatagacatgattgtgttccaataacact
i triMan1.JH594766         C 0 C 0
e calJac3.chr7             33721043 8152 + 155834243 I
e nomLeu3.chr18            81406129  0 - 104879549 C
e equCab2.chr29            10883053 24 +  33672925 I
e cerSim1.JH767738          9917048  0 +  34209287 C
e otoGar3.GL873762          1574005  0 -   1847653 C

a score=36081.000000
s hg38.chr8_KI270814v1_alt   135712 24 +    141812 tcctttCCtgaagcatttgataga
s panTro4.chr8             55038202 24 + 143986469 tcctttCCtgaagcatttgataga
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59179224 24 + 153482349 tcctttCCtgaagcatttgataga
i ponAbe2.chr8             C 0 C 0
s rheMac3.chr8             61702476 24 + 150158102 tcctttCCtgaagcatttgataga
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58376207 24 + 146850525 tcctttCCtgaagcatttgataga
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53297870 24 + 139301422 tcctttCCtgaagcatttgataga
i chlSab2.chr8             C 0 C 0
s triMan1.JH594766            29485 24 +   6345240 ttatttacaaaaccagacggcaga
i triMan1.JH594766         C 0 C 0
e calJac3.chr7             33721043 8152 + 155834243 I
e nomLeu3.chr18            81406129  0 - 104879549 C
e equCab2.chr29            10883053 24 +  33672925 I
e cerSim1.JH767738          9917048  0 +  34209287 C
e otoGar3.GL873762          1574005  0 -   1847653 C

a score=3022874.000000
s hg38.chr8_KI270814v1_alt   135736 2341 +    141812 cataacaacatttaaagttgt-----atttctttcctaaggttcctttcacaaagctttctcatgactcacacagactatctacaagatgcttgaactttcttaaatttcctatgatcctcaatagggcat-cccccattcatccttagtattctggagcaaatcgttcttactgtgtgtccctaaccttggtcccatctcatcacaattacccccttgagaacataaaacata-tgaagtgaacagaggactccctgtttattcctggggttccagaatgaaccagttttactgtgtaccactaaccttgccttcatcttctagcctgggaccaatgccctcaatcttggcctggcctctatccatgtctccgtgaccttagagtgaccctcactcagagcattctagcaggaaaatgatgatctctttactcaaattcccatttctcatcttctttaaccagatgagaagcctgtttttcagctaactgctgcaagggggcttgactttactccacttgaatttgaccttgaagacctcgatgcatatcgagaagggcatagaagtgattagagaaatggaggctacaggagcaagtgggaggaagcaagtgaggaatactcatggaaagcctccctgtgctccccaaaacagccacccttgaatttgagagggctatatgtatttgccctcttgacgtaaggtagtaacctccagaggatttgggccttagggtaaaaactccgaaagggtagaggaagaatttccctcctcccataggggtactatttcc-aaaaaaagcaagtaggtagggttcttaaaaggccacagaatgaggctgtatgcaggtgaacaaatggcttcaaaagccactgaagaactgggccgtgagcataacagcaaggaaaagcatgtggtaagtcataagaaactggcagagccccggggttccagttaacgtctttcccagcaatgtgccagcagatagggaaaggcttgaacatcatctgagctggggaaaacaaatataaatctcagggaatattcacaagggaatatctcatgagcagagctcatgtctctgctttcgagccaacacagcaagagtcacgggcatgcgagtgaccaggagcatgtgtatttcaggcagagaagtcacatggtatgcaaagtgaaaccagagaaaaggcagactggcctccgtgggaaaaggtatggtgggtgacaaggccattgcagaatacacacagagaaaggagggaataggtggtgtggactttttggaaagagctgattttagttgtaaaagctgagaggaagccccagacattgcacagtcttaggctttagcttcacagctttcatgagcatcctgtccaggagggccattagtgccttggttctacgtggtacagactccgagttccttcccactcctgtaagccacttatcagcgtgagctgagattggccgggaggagc-----agagccacttgtggccagtggaattgttctaggggtggtttagaaagcaggagattgaaaggagagacaaaacccaagtatatgagctgaattcctttgtcc------gaagaagatgaggtgtagaagtgtctcaccataggggactgtacttgagtcaAAACAACACAGCATTgttagtagcagtgaatctgtaaagttctgtagcaacttcaattcttgcctcctcagaagaaagaattcaacggcggggtgtaaggcagagtgagagactgaggcgaagttaagagcaggagtaaaatttcttaaaattttcggagcaggaatgaaaggaagtaaaatacacttggaagagggcaacacaggcaacttgagagatcaattgcatggtttgacctttga--tggggtcttatacattgccaggctcctaggtttgtgttatttttcccctgattcttccactgggacaggctgtccctatgcacagtggattgtcagcacttgggaggggccacatgtacagcgtgtttactgga-ttgtatgcctgctcacttgaaacattcttgtactggtagaatgttcccagagaaaagtcagagagcagttaaactctggcagttctccttttagggcacatgtgtgaacccactcaactaactcctaagatcttatggggaagctgctggtcaacagcttccagtgtttctgtgtattgggagactgcatttccttggcattgagtgtgaccaattgttattttggagaggcagcttaaaaactgcctgaccatcatctcttagttgcttgacactcctggtggtgggacaccctttcttgccctgctcatgcctgactagctacctaccgtaaca
s panTro4.chr8             55038226 2342 + 143986469 cataacaacatttaaagttgt-----atttctttcctaaggttcctttcacaaagctttctcatgactcacacagaccatctacaagatgcttgaactttcttaaatttcctatgatcctcaatagggcatccccccattcatccttagtattctggagcaaatcgttattactgtgtgtccctaaccttggtcccatctcatcacaattacccccttgagaacataaaacata-tgaagtgaacagaggactccctgtttattcctggggttccagaatgaaccagttttactgtgtaccactaaccttgccttcatcttctagcctgggaccaatgccctcaatcttggcctggcctctatccatgtctccgtgaccttagagtgactctcactcagagcattctagcaggaaaatgatgatctctttactcaaattcccatttctcgtcttctttcaccagatgagaagcctgtttttcagctaactgctgcaagggggcttgactttactccatttgaatttgaccttgaagaccttgatgcatatcgagaagggcatagaagtgattagagaaatggatgctacaggagcaagtgggaggaagcaagtgaggaatactcgtggaaagcctccctgtgctccccaaaacagccacccttgaatttgagagggctatatgtatttgccctcttgacgtaaggtagtaacctccagaggatttgggccttagggtaaaaactccgaaagggtagaggaagaatttccctcctcccataggggtactatttcc-aaaaaaagcaagtaggtagggttcttaaaaggccacagaatgaggctgtatgcaggtgaacaaatggcttcaaaagccactgaagaactgggccgtgagcataacagcaaggaaaagcatgtggtaagtcataagaaactggcagagccccggggttccagttaacatctttcccagcaatgtgccagcagatagggaaaggcttgaacatcatctgagctggtgaaaacaaatataaatctcagggaatattcacaagggaatatctcatgagcagagctcatgtctctgcttttgagccaacacagcaagagtcatgggcatgcaagtgaccaggagcatgtgtgtttcaggcagagaagtcacatggtatgcaaagtgaaaccagagaaaaggcagactggcctccattggaaaaggtatggtgggtgacaaggccattgcagaatacacacagagaaaggagggaataggtggtgtggactttttggaaagagctgattttagttgtaaaagctgagaggaagccccagacattgcacagtcttaggttttagcttcacagctttcatgagcatcctgtccaggagggccattagtgccttggttctacgtggtacagactccgagtaccttcccactcctgtaagccacttatcagcgtgagctgagattggccgggaggagc-----agagccacttgtggccagtggaattgttctaggggtggtttagaaagcaggagattgaaaggagagacaaaacccaagtatatgagctgaattcctttgtcc------gaagaagatgaggtgtagaagtgtctcaccataggggactgtacttgagtcaAAACAACACAGCATTgttagtagcagtgaatctgtaaagttctgtagcaacttcaattcttgcctcctcagaagaaagaattcaacggcggggtgtaaggcagagtgagagactgaggcaaagttaagagcaggagtaaaatttcttaaaattttcggagcaggaatgaaaggaagtaaaatacacttggaagagggcaacacaggcaacttgagagatcaattgcatggcttgacctttga--tggggtgttatacattgccaggctcctaggtttgtgttatttttcccctgattcttccactgggacaggctgtccctatgcacagtggattgtcagcacttgggaggggccacatgtacagcgtgtttactggg-ttgtatgcctgctcacttgaaacattcttgtactggtagaatgttcccagagaaaagtcagagagcagttaaactctggcagttctccttttagggcacatgtgtgaacccactcaactaactcctaagatcttatggggaagctgctggtcaacagcttccagtgtttctgtgtattgggagactgcatttccttggcattgagtgtgaccaattattattttggagaggcagcttaaaaactgcctgaccatcatctcatagttgcttgacactcctggtggtgggacaccctttcttgccctgctcatgcctgactagctacctatggtaaca
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59179248 2339 + 153482349 cataacaacctttaaagttgt-----atttctttcctaaggttcctttcacaaagctttctcatgactcacacagaccatctgcaagatgcttgaactttcttaaatttcctatgatcctgaatagggcatccccccattcatccttagtattctggagcaaatcgctcctactatgtgtccctaatctttgtcccatctcatcacaattaccctcttgagaacataaaacatactgaagtgaacagaggactccccgtttattcttggggttccagaatgaaccagttttaccatgtaccgctaaccttgccttcatcttctagcctgggaccaatgccctcaatcttggcctggcctctatccgtgtctccatgaccttagagtgactctcctttagagcattctagtaggaaaacgatgatctttttactcaaattcccatttctcatcttctttaactagatgagaagcctgtttttcagctaactgctgcaagggggcttgactttactccatttgaatttgaccttgaagaccttgatgcatattgagaagggcatagaagtgattagagaaatggaggctacaggagcaagtgggaggaagcgagtgaggaatactcatggaaagcctccctgtgctccccaaaacagccacccttgaatttgagagggctatatgtatttgccctcttgacataagatagtaacctccagaggatttgggccttagggtaaaaactccgaaaggatagaggaagaatttccctcctcccataggggtactatttcc-aaaaaaagcaagtaggtagtgttcttaaaaggccacagaatgaggttctatgcaggtgaacaaatggcttcaaaagccactgaagaactgggccctgagcataacagcaaggaaaagcatgtggtaagtcataagaagctggcagaggcctggggttccagttaacatctttcccagcaatgtgccagcagatagggaaaggcttgaacatcatctgagctggtgaaaacagatatacatctcagggaatattcacaagggaatatctcatgagcagagctcatgtcgctgctttcgagccaacacagcaagagtcatgggcatgcaagtgaccaggagcatgtgtatttcaggcagagaagtcacatggtatgcaaagtgaaaccagagaaaaggcagactggcctccatgggaaaaggtatggtgggtgacaaggccatttcagaatacacacagagaaaggagagaataggtagtgtggactttttggaaagagctgattttagttgtaaaagctgagaggaagccccagacattacaca--cttaggctttagcttcacagatctcatgagcatcctgtccaggagggtcattagtgccttggttctacgtggtacagactccgagttctttcccactcct-taagccacttatcagggtgagctgagatcggccgggaggaat-----ggagctacttgtggccagtggaattgttctaggggtggtttagaaagcaggagattgaaaggggagacaaaacccacatatatgagctgaattcctttgtct------gaagaagacgaggtgtagaagtgtctcaccatgggggactctatttgagtcacAACAACACAGCATTgttagtaccagtgaatctgtaaagttctgtagcaacttcagttcttccctcctcagaagaaagaattcaactgcggggtgtaaggcagagtgagagactgaggcaaagttaagagcaggagtaaaatttcttaaaattttcagagcaggaatgaaaggaagtaaaatacacttggaagagggcaacacaggcaacttgagagatcaattgcatggtttgacctttga--tggggtcttatacattgccaggctcctaggtttgtgttatttttcccctgattcttccactgggacaggct-tccctatgcacagtggattgtcagcacttgggaggagccacatgtacagcgtgtttactgga-ttgtatgcctgctcacttgaaacattcttgtactggtagaatgttcccagagaaaagtcagacagcagttaaactctggcagttctccttttagggcacatgtgtgaacccactcaactaactcctaaggtcttatggggaagctgctggtcaacagcttccagtgtttctgtgtattgggagactgcctttccttggcattgagtgtgaccaattattattttggagaggcagcttaaaaactgcctgaccatcatctcatagtcgcttgacattcctggtggtgggacaccctttcttgccttgctcatgcctgactagctacctacagtaaca
i ponAbe2.chr8             C 0 C 0
s rheMac3.chr8             61702500 2354 + 150158102 cataacaacctttaaagttgtataacatttctttcctaaggttcctttcacaaagctttctcataactcacacagaccatctacaagatgcttgaactttcttaaatttcttatGAtcctgaatagggcatccccccattcatccttagtattctggagcaaatcgttcttactgtgtgtccctaatcttggtcccatctcattacagttacccccttgagaacacaaaacatactgaagtgaacagaggatcccctgtttatccttggggttccagaatgaaccagttttactgtgtactgctaaccttgccttcatcttctagcctgggaccaatgccctcaatcttggcctggcctccatccatgtctccatgatcttagagtgactctcgctcagagcattctagcaggaaaatgatgatctctttactcaaattcccgtttgtcatcttctttaactagatgagaagcctgtttttcagctaagtgctgcaagggggtttgactttactccatttgaatttgaccttgaagaccttgatgcatattgagaagggcatagaagtgattagagaaatagaagctacaggaggaagtgggaggaagcgagtgaggaatactcatggaaagcctccctgtgctccccaaaacagccacccttgaatttgagagggccatatttatttgccctcttgacataaggtagtaacctccagaggatttgggccttagggtaaaaactcccaaaggttagaggaagaatttcccccctcccataggggtactatttccaaaaaaaagcaagtaggtagggttcttaaaaggccacagaatgaagctctatgcaggtgaacaaatggcttcaaaagccactgaagaactgggccctgagcataactgtaaggaaaagcatgtggtaagtcataagaagctggcagagccccagagttccagttaacatctttcccagcaatgtgccagcagatagggaaaggcttgaacatcatctgagctggtgaaaacaaatataaatgtcagggaatatttacaggggaatatctcatgagcagagctcatgtctctgctttcgagccaacacagcaagagttgcgggcgtgcgagtgactaggagcatgtgtatttcaggcagagaagtcacatggtatgcgaagtgaaaccagagaaaaggcagactaacttccatgggaaaaggtatggtgggtga------tatttcagaatacacacagagaaacgggagaataggtggtgtggactttttggaaagagctgattttaggtgtaaaagctgagaggaagccccaggcactgcacagtcttagacttcagtctcacagctctcgtgagcatcctgtccaggaaggccattagtgccttggttctatgtggtacagactccaggttccttcccactcctgtaagccacttatcagggtgagctgagatcagccgggaggagcacagcagagccacttgtggccagtggaattgttctaggggtggtttagaaagcaggagattgaaaggggagacaaaacccacgtatatgagctgaattcctttgtccaaagaggaagaagatgaggtgtagaagtgtctcaccatgggggactgtatttgagtcacAACAACACAGCA-Tgttagtagcggtgaatatgtaaagttctgcagcaacttctattcttgcctcctcagaagaaagagttcaactgcagggcataaggcagaatgagagactgaggcaaagttaagagcagcagtaaaatttcttaaaattttcagagcgagaatgaaaggaagtaaaatactcttggaagagggcaacacaggcaaattgagagatcaactgcatggtttgacctttgacttggggtcttctacattgccaggctcctagggttgtgttatttttcccctgatttttccactggaacaatgtgtccctacgcatagtggattgtcagcatttgggaggggccacatgcgcagcatgtttactggagttgtatgcctgcccacctgaaacattctcatacaggtagaacgctcccagagaaaagtcagagaggagttaaactctggcagttctccttttagggcacatgtgtgaacccactcaactaactcctaagatcttaaggggaagctgctggtcaacaactgccagtgtttctgtgtattgggagactgcctttccttggcaccgagtgtgaccaattatgatttt--agaggcagcttaaaaactgcctgaccatcatctcatggtcgcctgacattcctggtggtgggacaccctttcttgccctgctcatgtctgactagctacctacagtaaca
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58376231 2354 + 146850525 cataacaacctttaaagttgtataacatttctttcctaaggttcctttcacaaagctttctcataactcacacagaccatctacaagatgcttgaactttcttaaatttcttatGAtcctgaatagggcatccccccattcatccttagtattctggagcaaatcgttcttactgtgtgtccctaatcttggtcccatctcattacaattacccccttgagaacataaaacatactgaagtgaacagaggatcccctgtttatccttggggttccagaatgaaccagttttactgtgtactgctaaccttgccttcatcttctagcctgggaccaatgccctcaatcttggcctggcctccatccatgtctccatgatcttagagtgactctcgctcagagcattctagcaggaaaatgatgatctctttactcaaattcccgtttgtcatcttctttaactagatgagaagcctgtttttcagctaagtgctgcaagggggtttgactttactccatttgaatttgaccttgaagaccttgatgcatattgagaagggcatagaagtgattagagaaatagaagctacaggaggaagtgggaggaagcgagtgaggaatactcatggaaagcctccctgtgctccccaaaacagccacccttgaatttgagagggccatatttatttgccctcttgacataaggtagtaacctccagaggatttgggccttagggtaaaaactcccaaaggttagaggaagaatttcccccctcccataggggtactatttccaaaaaaaagcaagtaggtagggttcttaaaaggccacagaatgaagctctatgcaggtgaacaaatggcttcaaaagccactgaagaactgggccctgagcataacagtaaggaaaagcatgtggtaagtcataagaagctggcagagccccagagttccagttaacatctttcccagcaatgtgccagcagatagggaaaggcttgaacatcatctgagctggtgaaaacaaatataaatgtcagggaatatttacaggggaatatctcatgagcagagctcatgtctctgctttcgagccaacacagcaagagttgcgggcgtgcgagtgactaggagcatgtgtatttcaggcagagaagtcacatggtatgcgaagtgaaaccagagaaaaggcagactaacttccatgggaaaaggtatggtgggtga------tatttcagaatacacacagagaaacgggagaataggtggtgtggactttttggaaagagctgattttaggtgtaaaagctgagaggaagccccaggcactgcacagtcttagacttcagtctcacagctctcgtgagcatcctgtccaggaaggccattagtgccttggttctatgtggtacagactccaggttccttcccactcctgtaagccacttatcagggtgagctgagatcagccgggaggagcacagcagagccacttgtggccagtggaattgttctaggggtggtttagaaagcaggagattgaaaggggagacaaaacccacgtatatgagctgaattcctttgtccaaagaggaagaagatgaggtgtagaagtgtctcaccatgggggactgtatttgagtcacAACAACACAGCA-Tgttagtagcggtgaatatgtaaagttctgcagcaacttctattcttgcctcctcagaagaaagagttcaactgcagggcataaggcagaatgagagactgaggcaaagttaagagcagcagtaaaatttcttaaaattttcagagcgagaatgaaaggaagtaaaatactcttggaagagggcaacacaggcaaattgagagatcaactgcatggtttgacctttgacttggggtcttctacagtgccaggctcctagggttgtgttatttttcccctgatttttccactggaacaatgtgtccctacgcatagtggattgtcagcatttgggaggggccacatgcgcagcatgtttactggagttgtatgcctgcccacctgaaacattctcatacaggtagaacgctcccagagaaaagtcagagaggagttaaactctggcagttctccttttagggcacatgtgtgaacccactcaactaactcctaagatcttaaggggaagctgctggtcaacaactgccagtgtttctgtgtattgggagactgcctttccttggcaccgagtgtgaccaattatgatttt--agaggcagcttaaaaactgcctgaccatcatctcatggtcgcctgacattcctggtggtgggacaccctttcttgccctgctcatgtctgactagctacctacagtaaca
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53297894 2350 + 139301422 cataacaacctttaaagttgtataacatttctttcctaaggttcctgtcacaaagctttctcatgactcacacagaccatctacaaaatgcttgaactttcttaaatttcttatgatcctgaatagggcatcctcccattcatccttagtattctggagcaaatcgttcttactgtgtgtccctaatcttggtcccatctcattacaattacccccttgagaacataaaacatactgaagtgaacagaggatcccctgtttatccttggggttccagaatgaaccagttttactgtgtactgctaaccttgccttcatcttctagcctgcgactgatgccctcaatcttggcctggcatccatccatgtctccatgatcttagagtgactctcgctcagagcattctagcaggaaaatgatgatctctttactcaaattcccgtttgtcatcttctttaactagatgagaagcctgtttttcagctaagtgctgcaagggggtttgactttactccatttgaatttgaccttgaagaccttgatgcatattgagaagggcatagaagtgattagagaaatagaagctacaggaggaagtgggaggaagcgagtgaggaatactcatggaaagcctccctgtgctccccaaaacagccacccttgaatttgagagggccatatttatttgccctcttgacataaggtagtaacctccagaggatttgggccttagggtaaaaactcccaaagggtagaggaagaatttccctcctcccataggggtactatttccaaaaaaaagcaagcaggtagagttcttaaaaggccacagaatgaggctctatgcaggtgaacaaatggcttcaaaagccactgaagaactgggccctgagcataacagtaaggaaaaatatgtggtaagtcataagaagctggcagaaccccagagttccagttaacatctttcccagcaatgtgccagcagatagggaaaggcttgaacatcatctgagctggtgaaaacaaatataaatctcagggaatattcacaagggaatatctcatgagcagagctcatgtctctgctttcgagccaacacagcaagagttgtgggcacgtgagtgaccaggagcacgtgtatctcaggcagagaagtcacatggtatgcgaagtgaaaccagagaaaaggcagactggccttcatgggaaaaggtatggtgggtga------catttcagaatacacacagagaaagggaggaataggtggtgtggactttttggaaagagctgattttaggtgtaaaagctgagaggaagccccaggcattgcacagtcttaggctctagcctcacagctctcataagcatcctgtccaggaaggccataagtgccttggttctatgtggtacagactccgagttccttcccactcctgtaagccacttatcagggtgagctgagatcagccgggaggagcacagtagaaccacttgtggccagtggaattgttctaggggtggtttagaaagcaggagattgaaaggggagacaaaacccacatacatgaactgaattcctttgtccgaagaagaagaagatgaggtgtagaagtgtctcaccatgggggactgtatttgagtcacAACAACACAGCA-Tgttagtagcggtgaatatgtaaagttctgcagcaacttctattcttacctcctcagaagaaagagttcaactgcgggacataaggcagaatgagagactaaggcaaagttaagagcaggagtaaaatttctcaaaattttcagagcgggagtgaaaggaagtaaaatattcttggaagagggcgacataggcaaattgagagatcagctacatggttcgacctttgacttggggtcttacacattgccaggctcgtaggtttgtgttatttttcccctgatttttccactggaacaggctgtccctatgcatagtggattgtcagcatttgggaggggccacatgtgcagcatgttcactggagttgtatgcctgcccacttgaaacattcttatacaggtagaacgctcccagaaaaa----agagaggagttaaactctggcagttctcctttcagggcacatgtgtgaacctattcaactaactcctaagatcttaaggggaagctgctggtcaacaactgccagtgtttctgtgtattgggagactgcctttccttggcacctagtgtgaccaattatgatttt--agaggcaacttaaacactgcctggccatcatctcatggttgcctgacattcctggtggtgggagaccctttcttgccctgctcatgtctgactagctacctacagtaata
i chlSab2.chr8             C 0 C 0
e calJac3.chr7             33721043 8152 + 155834243 I
e nomLeu3.chr18            81406129    0 - 104879549 C
e equCab2.chr29            10883053   24 +  33672925 I
e triMan1.JH594766            29509    0 +   6345240 C
e cerSim1.JH767738          9917048    0 +  34209287 C
e otoGar3.GL873762          1574005    0 -   1847653 C

a score=387488.000000
s hg38.chr8_KI270814v1_alt   138077 294 +    141812 AGAACATCTGACAAGATTGAAGGCTTGGC-AGAAGAACATCTGACATAATTGAACTTTTGGCAGAAGAAACATCTAAGATGTC---ATATTTGGCAGAAGAGACATCTAAGAGGATTTCATGGTCAGCAGGAACCCCAAGGGAGATGGCATGGTAGGCAGAGGGAGTATCTGAAA--ATTGCACTGTCTGCATAAGGATGACCTAGGATGAGTGCATGGCCTGCAAAAGAAA-------CATCTGAAAAGATTAAATATTTGGCAGGGGAAACATCTGACAAGGTTCAATGTTTGGTAGTAAAAAGg
s panTro4.chr8             55040568 294 + 143986469 AGAACATCTGACAAGATTGAAGGCTTGGC-AGAAGAACATCTGACATATTTGAACTTTTGGCAGAATAAACATCTAAGATGTC---ATATTTGCCAGAAGAGACATCTAAGAGGATTGCATGGTCAGCAGGAACCCCAAGGGAGATGGCATTGTAGGCAGAGGGAGTATCTGAAA--ATTGCACGGTCTGCATAAGGATGACCTAGGACGAGTGCATGGCCTGCAAAAGAAA-------CATCTGAAAAGATTAAATATTTGGCAGGGGAAACATCTGACAAGGTTCAATGTTTGGTAGTAAAAAGg
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59181587 293 + 153482349 AGAACATCTGACAAGATTGAATGTTTGGC-AGAAGAACATCTGACATATTTGAACTTTTGGCAGAAGAAACATCTAAGATGTC---ATATTTGGCAGAAGAGACATCTAAGAGGATTGCATGGTCA-CAGGAACCCTGAGGAAGATGGCATGGTAGGCAGAGGGAGTATCTGAAA--ATTGCACAGTCTACATAAGGATGACCTAGGAAGAGTGCATGGCCTGCAAAAGAAA-------CATCTAAAAAGATTAAACACTTGGCAGGGGAAACAACTGACAAGGTTCAATGTTTGGTAGTAAAAATg
i ponAbe2.chr8             C 0 C 0
s rheMac3.chr8             61704854 303 + 150158102 AGAACATCTGACAAGACTGAATGTTTGGC-GGAAGAACATCTGACATATTTGAATTTTTGGCAGAAGAAACATCTAAGATGTA---GTATTTGGCAGAAGAGACATCTAAGAGCATTGCGTGGTCAGCAGGAACCCTGAGGGAGATGGCATGGTAGGCAGAGGGAGTATCTAAAAAGATTGCACAGTCTGCATAAGGATGACCTAGGAAGAGTGCATGGCCTGCAAAAGAAAAGATTCTAATCTGAAAAGATTAAATATTTGGCACGGGAAACATCTGATAAGGTTCAATGTTTGTTAGTAAAAATg
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58378585 303 + 146850525 AGAACATCTGACAAGACTGAATGTTTGGC-GGAAGAACATCTGACATATTTGAATTTTTGGCAGAAGAAACATCTAAGATGTA---GTATTTGGCAGAAGAGACATCTAAGAGCATTGCGTGGTCAGCAGGAACCCTGAGGGAGATGGCATGGTAGGCAGAGGAAGTATCTAAAAAGATTGCACAGTCTGCATAAGGATGACCTAGGAAGAGTGCATGGCCTGCAAAAGAAAAGATTCTAATCTGAAAAGATTAAATATTTGGCACGGGAAACATCTGATAAGGTTCAATGTTTGTTAGTAAAAATg
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53300244 303 + 139301422 AGAACATCTGATAAGACTGAATGTTTGGC-AGAAGAACATCTGACATATTTGAATTTTTGGCAGAAGAAACATCTAAGATGTC---ATATTTGGCAGAAGAGACATCTAAGAGCATTGCGTGGTCAGCAGGAACCCTGAGAGAGATGGCATGGTAGGCAGAGGGAGTATCTAAAAAGATTGCACAGTCTGCATAAGGATGACCTAGGAAGAATGCATGGCCTGCAAAAGAAAAGATTCTAATCTGAAAAGATTAAATATTTGGCAGGGGAAATATCTGATAAGGTTCAATGTTTGGTAGTAAAAATg
i chlSab2.chr8             C 0 C 0
s calJac3.chr7             33729195 237 + 155834243 AGAAGGTCTGATGAGGCTGGAGGCTTGGCTGAAAGAACGCCTGATGAATCTGCACCCTTGGTGGAGACAACGCCTGAGGAGGCTGAAAGTTTGGGGGAGGAAACCACTGAT------------------------------GAGGCTGCAGGCTTGATGGAAAGAACACCTGATGAGGCCGCGC-----------------CCTTGA--------------TGGAAAAGA---------CGCCTGGGGAGGCTGAACACTTGGCAGACAGAAGGCCTGACGAGGCTGAATGCTGGGAAGAAAGAAGG
i calJac3.chr7             I 8152 T 8389
e nomLeu3.chr18            81406129   0 - 104879549 C
e equCab2.chr29            10883053  24 +  33672925 I
e triMan1.JH594766            29509   0 +   6345240 C
e cerSim1.JH767738          9917048   0 +  34209287 C
e otoGar3.GL873762          1574005   0 -   1847653 C

a score=266155.000000
s hg38.chr8_KI270814v1_alt   138371 214 +    141812 ttagcggtggcagatttgcatgtgtcagcagcaaactgaagtcttgcctccccagaagaaagaattcaactgagagacatatggcagagtgagagacaaaggcaagttttagagcaggagtgaaagtttcttaaaaagcattagagc-aaaacaaaagaaaataaagtacacatggaagaaggcaaagtgggtggcttgagagatcaagtccatg
s panTro4.chr8             55040862 214 + 143986469 ttagcggtggcagatttgcatgtgtcagcagcaaactgaagtcttgcctccccagaagaaagaattcaactgagggacatatggcagagtgagagacaaagacaagttttagagcaggagtgaaagtttcttaaaaagcattagagc-aaaacaaaagaaaataaagtacacatggaagaaggcaaagtgggtggcttgagagatcaagtccatg
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59181880 215 + 153482349 ttagcggtggcagatttgcatgtgtcagcagcaaactgaagtcttgcctccccagaagaaagaattcaactgagggacatatggcagagtgagagacaaaggcaagttttagagcaggagtgaaagtttcttaaaaagcattagagcaaaaacaaaagaaaataaagtacacatggaagaaggcaaagtgggaggcttgagagatcaaatccatg
i ponAbe2.chr8             C 0 C 0
s rheMac3.chr8             61705157 207 + 150158102 ttagtggtggcagatttgcatgtgtcggcagcaacctgaa---ttgcctccccagaagaaagaattcaacggagggatataaggcagagtgagaggcaaaggcaagttttagagcaggagtgaaagtttcttaaaaagcattagagcagaaacaaaagaaaataaagtacatgtggaagaaagcaaagtgggtggcttgagaga-----tccatg
i rheMac3.chr8             C 0 I 16
s macFas5.chr8             58378888 207 + 146850525 ttagtggtggcagatttgcatgtgtcggcagcaacctgaa---ttgcctccccagaagaaagaattcaacggagggatataaggcagagtgagaggcaaaggcaagttttagagcaggagtgaaagtttcttaaaaagcattagagcagaaacaaaagaaaataaagtacatgtggaagaaagcaaagtgggtggcttgagaga-----tccatg
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53300547 212 + 139301422 ttagtggtggcagatttgcctatgtcggcagcaacctgaa---ttgcctccccagaagaaagaattcaactgagggatataaggcagagtgagaggcaaaggcaagttttagagcaggagtgaaagtttcttaaaaagcattagagcagaaacaaaagaaaataaagtacacgtggaagaaagcaaagtgggtggcttgagagatcaagtccatg
i chlSab2.chr8             C 0 C 0
e calJac3.chr7             33729432 8389 + 155834243 T
e nomLeu3.chr18            81406129   0 - 104879549 C
e equCab2.chr29            10883053  24 +  33672925 I
e triMan1.JH594766            29509   0 +   6345240 C
e cerSim1.JH767738          9917048   0 +  34209287 C
e otoGar3.GL873762          1574005   0 -   1847653 C

a score=1000.000000
s hg38.chr8_KI270814v1_alt   138585 1 +    141812 g
s panTro4.chr8             55041076 1 + 143986469 g
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59182095 1 + 153482349 g
i ponAbe2.chr8             C 0 C 0
s macFas5.chr8             58379095 1 + 146850525 g
i macFas5.chr8             C 0 I 15
s chlSab2.chr8             53300759 1 + 139301422 g
i chlSab2.chr8             C 0 C 0
e calJac3.chr7             33729432 8389 + 155834243 T
e nomLeu3.chr18            81406129 0 - 104879549 C
e equCab2.chr29            10883053 24 +  33672925 I
e triMan1.JH594766            29509 0 +   6345240 C
e cerSim1.JH767738          9917048 0 +  34209287 C
e rheMac3.chr8             61705364 16 + 150158102 I
e otoGar3.GL873762          1574005 0 -   1847653 C

a score=16968.000000
s hg38.chr8_KI270814v1_alt   138586 32 +    141812 ttgacctttgacttggggttttatacattggt
s panTro4.chr8             55041077 32 + 143986469 ttgacttttgacttggggttttatacattggt
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59182096 32 + 153482349 ttgacctttgacttggggttttatacattggt
i ponAbe2.chr8             C 0 C 0
s chlSab2.chr8             53300760 32 + 139301422 ttgacctttgacttggggtcttatacattgat
i chlSab2.chr8             C 0 C 0
e calJac3.chr7             33729432 8389 + 155834243 T
e nomLeu3.chr18            81406129  0 - 104879549 C
e equCab2.chr29            10883053 24 +  33672925 I
e triMan1.JH594766            29509  0 +   6345240 C
e cerSim1.JH767738          9917048  0 +  34209287 C
e rheMac3.chr8             61705364 16 + 150158102 I
e macFas5.chr8             58379096 15 + 146850525 I
e otoGar3.GL873762          1574005  0 -   1847653 C

a score=673863.000000
s hg38.chr8_KI270814v1_alt   138618 558 +    141812 agccttctcaggctgcattatttctcccctgattcttcccttgcggtgtgctgtccatacatgcagtggcctgccagcacttgggagaatgcatttgcagtgtgttttttggagttgtatgcctgctcacttaaggtgttgtttttttacttgatcttagccaaaaggctgagaagcgatAGGGTGTTGTTTTTTCAAAATGTAAGgtgttctcagagacaggtcacaaatcaattaaaatcaccgttttgcctcttactgcacacatctaagcccaccagctcgaatcctgagatattattatgaagctgctgatcaccaattttaggtgtttctatttattggaaaactgcctttccctgggctggctgcaactaattattattttaaaaaagtagtttaataaccacctcatcttcacttcatggttttcttatattgctggtgaaggtgggaggggggcttttctgtcctgctcatatctgactaggtacccaATGTCATGGGAACATCGGACAAGATTGACTGTTTGGCAGAAGAAACATCTGGTAAGTTTGC
s panTro4.chr8             55041109 558 + 143986469 agccttctcaggctgcgttatttctcccctgattcttcccttacggtgtgctgtccgtacatgcagtggcctgccagcacttgggagaatgcatttgcagtgtgttttttggagttgtatgcctgctcacttaaggtgttgttttttcacttgatcttagccaaaaggctgagaagcgatAGGGTGTTGTTTTTTCAAAATGTAAGgtgttctcagagacaggtcacaaatcaattaaaatcaccgttttgcctcttactgcacacatctaagcccaccagctcaaatcccgagatattattatgaagctgctgatcaccaattttaggtgtttctatttattggaaaactgcctttccctgggctggctgcaactaattattattttaaaaaagtactttaataaccacctcatcttcacttcatggttttcttatattgctggtgaaggtgggaggggggcttttctgtcctgctcatatctgactaggtaccCAATGTCATGGGAACATCGGACAAGATTGACTGTTTGGCAGAAGAAACATCTGGTAAGTTTGC
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59182128 558 + 153482349 agccttctcaggctgtgttatttctcccctgattcttcccttagggtgtgctgtccgtacatgcagtggcctgccagcatttgggagactgcatttgcagtgtgttttttggagttgtatgcctgctcacttaaggTGGTGTTTTTTcacttgatcttagccaaaaggccgagaagcgatAGGGTGTTGTTTTTTCAAAATGTAAGgtgttctcagagacaggtcacaaatcagttaaaatcacaattttgcctcttactgcacacatctaagcccaccagctcaaatcctgagatattattatgaagctgctgatcaccaattttaggtgtttctatttattggaaaactgcctttccctgggctggctgcaactaattattattttagaaaagtagtttaataaccacctcatcttcacctcatggttttcttatattcctggtgaaggtgggaggggggcttttctgtcctgctcatatctgactaggtaccCAATGTCATGGGAACATCGGACAAGATTGAATGTTTGGCAGAAGAAACATCTGATAAGTTTGC
i ponAbe2.chr8             C 0 C 0
s rheMac3.chr8             61705380 499 + 150158102 agccttctcaggttgtgttatttttcccctgattcttcccttagggtgtgctgtccatacatgcagtggcctgccagcacctgggagactgcatttgcagtgtgttttttggagttgtatgcctgctcacttaa------------------------------------------------ggtattgttttttcaaaatgtaaggtgttctcagagacaggtcacaaatcaattaaaatcaccatgttgcctcttactgcacacatctaagcccaccagctcaaatcctgaggtattattatgaagctgctgatcaccaattttagatgtttctatttattggaaaactgcctttccctgagctagctgcaactaattattattttagaaaggtagtttaataaccac-----------ctcatggttttcttatattcctggtgaaggtgggagcggggcttttctgtcctgctcatatctgactaggtacctaATGTCATGGGAACATCGGACAAGATTGAATGTTTGGCAGAAGAAACATCTGATAAGTTTGC
i rheMac3.chr8             I 16 C 0
s macFas5.chr8             58379111 510 + 146850525 agccttctcaggttgtgttatttttcccctgattcttcccttagggtgtgctgtccatacatgcagtggcctgccagcacctgggagactgcatttgcagtgtgttttttggagttgtatgcctgctcacttaa------------------------------------------------ggtattgttttttcaaaatgtaaggtgttctcagagacaggtcacaaatcaattaaaatcaccatgttgcctcttactgcacacatctaagcccaccagctcaaatcctgagatattattatgaagctgctgatcaccaattttagatgtttctatttattggaaaactgcctttccctgagctagctgcaactaattattattttagaaaggtagtttaataaccacctcatcttcaactcatggttttcttatattcctggtgaaggtgggagcggggcttttctgtcctgctcatatctgactaggtacctaATGTCATGGGAACATCGGACAAGATTGAATGTTTGGCAGAAGAAACATCTGATAAGTTTGC
i macFas5.chr8             I 15 C 0
s chlSab2.chr8             53300792 510 + 139301422 agccttctcaggttgtgttatttttcccctgattcttcccttaggctgtgctgtccatacatgcagtggcctgccagcacttgggagactgcatttgcagtgtgttttttggagttgtatgcctgctcacttaa------------------------------------------------ggtgttgttttttcaaaatgtaaggtgttctcagagacaggtcacaaatcaattaaaatcaccatgttgcctcttactgcacacatctaagcccaccagctcaaatcctgagatattattatgaagctgctgatcaccaattttagatgtttctatttattggaaaactgcctttccctgagctagctgcaactaattattattttagaaaggtagtttaataaccacctcatcttcaactcatggttttcttatattcctggtgaaggtgggagtggggcttttctgtcctgctcatatctgactaggtacctaATGTCATGGGAACATCGGACAAGATTGAATGTTTGGCAGAAGAAATAGCTGATGAGTTTGC
i chlSab2.chr8             C 0 C 0
e calJac3.chr7             33729432 8389 + 155834243 T
e nomLeu3.chr18            81406129   0 - 104879549 C
e equCab2.chr29            10883053  24 +  33672925 I
e triMan1.JH594766            29509   0 +   6345240 C
e cerSim1.JH767738          9917048   0 +  34209287 C
e otoGar3.GL873762          1574005   0 -   1847653 C

a score=933359.000000
s hg38.chr8_KI270814v1_alt   139176 677 +    141812 ATGTTAAGCAGAATAAACGTCTGAGATGATTTCACATTTGACAGAAGGAAGAGCAAGTGCAAAGTGTTGTATGCTTGATTCAACTTTGTAGTGTTTATGAGCAGTTACACTTTGCTAGTGGAAATAATGTGGCATGGGAGTGGTGCGGAATGAATATCTACATAAGGCAAACTTCAGAAAGCC-TTTTAAGAGTATATAAA-----TGAGTAGACCTTATTCTGTGGGCCAGGGAAAAATTCTC----TGAATACTTCTGGCTGTGAATACTAGTTGACCCAACTATAATAACAGTGGCTAAAACCATGGGAACCAAAGTTATTTTGGTGGTTCAAGGATATCAT-AGCATAGCACTTACTTTTCCTCTTTCAGCTGTGCTATTGGCAGTGTTTTGTCCATGGTT------------GGCTAATTAgcaatgactccagtcatcatgttctctcaagacaatatgtgaaggctggaaagtctgcttttcttcatgtttcttttaaatagggagtaaagtcagaagcttgcggtgatcttcctgtaacaatttag---------tgcacaatatgctaattcctaaaccagtcaatatgaaagcaaatgtagtcactttaattagctaagaataatc-----------------------------------------------TAATAA---------------------------------------------------------------------------------------------------AATGTTAAGCAGGGGAGTCACAAGATTAGGTTTGAGTATTAAGGCATTCTTGGCATTGTATAAAGTa
s panTro4.chr8             55041667 676 + 143986469 ATGTTAAGCAGAATAAACATCTGAGATGATTTCACGTTTGACAGAAGGAAGAGCAAGTGCAAAGTGTTGTATGCTTGATTCAACTTTGTAGTGTTTATGAGCAGTTACACTTTGCTAGTGGAAATAATGTGGCATGGGAGTGGTGTGGAATGAATATCTACATAAGGCAAGCTTCAGAAAGCC-TTTTAAGAGTATATAAA-----TGAGTAGACCTTATTCTGTGGGCCAGGGAAAAATTCTC----TGTG-AATTCTGGCTGTGAATACTAGCTGACCCAACTATAATAACAGTGGCTAAAACCATGGGAACCAAAgttattttggtggttcaaggatatcat-agcatagcacttacttttcctctttcagctgtgctattggcagtgttttgtccatggtt------------ggctaattagcaatgactccagtcatcatgttctctcaagacaatatgtaaaggctggaaagtctgcttttcttcacgtttcttttaaatagggagtaaagtcagaagcttgcagtgatcttcctgtaacaatttag---------tgcacaatatgctaattcctaaaccagtcaatatgaaagcaaatgtagtcactttaattagctaagaataatc-----------------------------------------------TAATAA---------------------------------------------------------------------------------------------------AATGCTAAGCAGCGGAGTCACAAGATTAGGTTTGAGTATTAAGGCATTCTTGGCATTGTATAAAGTa
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59182686 677 + 153482349 ATGTTAAGCAGAATAAACATCTGAGATGATTTCACGTTTGACAGAAGGAAGAGCAAGTGCAAAGGGTTATATGCTTGATTTAACTTTGTAGTGTTTATGAGCAGCTACACTTTGCTAGTGGAAATAATGTGGCATGGGAGTGGTGTGGAATGGATATCTACATAAGGCAAACTTCAGAAAGCC-TTTTAAGAGTATATAAA-----TGAGTAGATCTTATTCTGTGGGCCAGGGAAAAATTCTC----TGAATACTTCTGACTGTGAATACTAGCTGACCCAACTATAATAACAATGGCTAAAACCATGGGAACCAAAGTTATTTTGGTGGTTCAAAGATATCAT-AGCATAGCACTTATTTTTCCTCTTTCAGCTGTGCTATTGGCAGTGTTTTGTCCATAGTT------------GGCTAATTAGCAATGACTCCAGTCATCATGTTCTCTCAAGACAATATGTGAAGCCTGGAAGGGCTGCTTTTCTTCACGTTTCTTTTAAATAGGGAGTAAACTCAGAAGCTTGCAGTGATCTTCCTGTAACAATTTAG---------TGCACAacatgctaattcctaaaccagtcaatatgaaagcaaatgtagttactttaattagctaagaataatc-----------------------------------------------CAATAA---------------------------------------------------------------------------------------------------AATGttaagcagaggagtcacaaaattaggtttgagtattagggtgttcttggcactgtataaagta
i ponAbe2.chr8             C 0 C 0
s rheMac3.chr8             61705879 656 + 150158102 ACGTTAAGCAGAATAAACATCTGAGATGATTTCGTGTTTGACAGAAGGAAGAGCAAGTGCAAAATGTTGTATGCTTGATTAATCTTTGTAGTGTTTATGAGCAGTTACACTTTGCTAGTGGAAATAATGTGGCATGGGAGTGGTGTGGACTGAATACCTACATAAGGCAAGCTTCAGAAAGCC-TTTTAATAGTATATAAA-----TGAGTAGATCTTATTCTGTGGGCCAGGGAAAAATTCTC----TGAATACTTCTGGCTGTGAATATTAGCTGACCTAACTATAATAACAATGACTAAAACCATGGGAACCAAAGTTGTTTTGGTGGTTCAAGGATATCAT-AGC---------------------TTAGCTGTGCTACTGGCAGTGTTTTGTCCATGGTT------------GGCTAATTAGCAATGACTTCAATCATCATGTTCTCTGAAGACAGTATGTGAAGGCTGGAAGGGTTGCCTTTCTTCACGTTTCTTTTAAATAGGGAGTAAACTCAGATGCTTGCAGTGATCTTCCTGTAACATTTTAG---------GGTACAacatgctcattcctaaacgagtcaatatgaaagcaaatgtagttactttgattagctaagaataatc-----------------------------------------------TAATAA---------------------------------------------------------------------------------------------------AACATTAAGCAGGGGAGTCACAAGATTAGATTTGAGTATTAGGGCATTCTTGTCACTGTTTAAAGTa
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58379621 656 + 146850525 ACGTTAAGCAGAATAAACATCTGAGATGATTTCATGTTTGACAGAAGGAAGAGCAAGTGCAAAATGTTGTATGCTTGATTAATCTTTGTAGTGTTTATGAGCAGTTACACTTTGCTAGTGGAAATAATGTGGCATGGGAGTGGTGTGGACTGAATACCTACATAAGGCAAGCTTCAGAAAGCC-TTTTAATAGTATATAAA-----TGAGTAGATCTTATTCTGTGGGCCAGGGAAAAATTCTC----TGAATACTTCTGGCTGTGAATATTAGCTGACCTAACTATAATAACAATGACTAAAACCATGGGAACCAAAGTTGTTTTGGTGGTTCAAGGATATCAT-AGC---------------------TTAGCTGTGCTACTGGCAGTGTTTTGTCCATGGTT------------GGCTAATTAGCAATGACTTCAATCATCATGTTCTCTGAAGACAGTATGTGAAGGCTGGAAGGGTTGCCTTTCTTCACGTTTCTTTTAAATAGGGAGTAAACTCAGATGCTTGCAGTGATCTTCCTGTAACATTTTAG---------GGTACAacatgctcattcctaaacgagtcaatatgaaagcaaatgtagttactttgattagctaagaataatc-----------------------------------------------TAATAA---------------------------------------------------------------------------------------------------AACATTAAGCAGGGGAGTCACAAGATTAGATTTGAGTATTAGGGCATTCTTGTCACTGTTTAAAGTa
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53301302 655 + 139301422 ATGTTAAGCAGAATAAACATCTGAGATGATTTCATGTTTGACAGAAGGAAGAGCAAGAGCCAAAGGTTGTATGCTTGATTAATCTTTGTAGTGTTTATGAGCAGTTACACTTCGCTAGTGGAAATAATGTGTCATGGGAGTGGTGTGGAATGAATACCTACATAAGGCAAGCTTCAGAAAGCC-TTTTAATAGTATATAAA-----TGAGTAGATCTTATTCTGTGGGCCAGGGAAAAATTCTC----TGAATACTTCTGGCTGTGAATATTAGCTGACCTAACTATAATAACAATGACTAAAACCATGGGAACCAAAGTTGTTTTGGTGGTTCAGGGATATCAT-AGC---------------------TTAGCTGTGCTATTGGCAGTGTTTTGTCCATGGTT------------GGCTAATTAGCAATGACTTCAATCATCATGTTCTCTGAAGACAGTATGTGAAGGCTGGAAGGGTTGCTTTTCTTCACGTTTCTTTTAAATA-GGAGTAAACTCAGATGCTTGCACTGATCTTCCTGTAACATTTTAG---------GGTACAacatgctcattcctaaacgagtcaatatgaaagcaaatgtagttactttgattagctaagaatactc-----------------------------------------------TAATAA---------------------------------------------------------------------------------------------------AACGTCAAGCAGGGGAGTAACAAGATTAGATTTGAGTATTAGGGCATTCTTGGCACTGTTTACAGTa
i chlSab2.chr8             C 0 C 0
s equCab2.chr29            10883077 828 +  33672925 ATGTTTAGCAGGAGGAACCTATCCA--GATTACATGTTTggcagaaggaacagcaa-tgaaaaggctaagagaggtgagtgaactttgcaggattaatgagcagttcaattttgctggtacaaaaagtgtgctataggaatggttcggaatga----------ggTGCAAGCTTATGAAAGCCTTTTTAGTACTGTAGAAAGGAGTGGAGTGGATCTTATCCTGTAGATCTTGGGAAATTtatcagttagaatgcttttagctactaataataggtgacctaac-----taacagtggctaacataataggaaCCAGGGTTGCTTTGGTGGTTCAGTGGTGTCATCAGGATCCCAGTTGTTGTCCCTC--TCAGCTTTGA-ATTGGCATTGTTTTGTTTGTATTTTCTTTCCTCATCTGCTAATTAgcaacagccccgagcaccgtattttcatatgacaatatccaaagactgggagagctgctttacgt---gattcttttaaataggaagaaaattcagaagcttgcagtagacttccc-cagcattttattggctggactgcatcacttgctcatt-ctaaactagtaactagtataggaaatgtaattactgttgttagcttagattaatcatctctttttgcagctgggcagaggcctctctctttgtgtattgggacaataaatatacaaataaaagttgtggttctccagcacgaatgaagaataaggaatggctgttgggtagagagccagcCAGATTTGCAGCAgggagtcattggagaattttgaacagaagagtaatgagattagatttga-tgttaggacactctgcttatgggatgaagca
i equCab2.chr29            I 24 C 0
e calJac3.chr7             33729432 8389 + 155834243 T
e nomLeu3.chr18            81406129   0 - 104879549 C
e triMan1.JH594766            29509   0 +   6345240 C
e cerSim1.JH767738          9917048   0 +  34209287 C
e otoGar3.GL873762          1574005   0 -   1847653 C

a score=49791.000000
s hg38.chr8_KI270814v1_alt   139853 31 +    141812 gggattggcaagctttacccatatagggctc-
s panTro4.chr8             55042343 31 + 143986469 gggattggcaagctttacccatatagggctc-
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59183363 31 + 153482349 gggattggcaagcttttcccatatagggttc-
i ponAbe2.chr8             C 0 C 0
s rheMac3.chr8             61706535 30 + 150158102 gggattggcaagcttttcccatata-ggctc-
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58380277 30 + 146850525 gggattggcaagcttttcccatata-ggctc-
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53301957 30 + 139301422 gggattggcaagcttttcccatata-ggctc-
i chlSab2.chr8             C 0 C 0
s otoGar3.GL873762          1574005 30 -   1847653 gagactggcaagctttttctgtaaa-ggatc-
i otoGar3.GL873762         C 0 I 1
s equCab2.chr29            10883905 31 +  33672925 gagatcagcaggctttttctggaaa-agacca
i equCab2.chr29            C 0 C 0
e calJac3.chr7             33729432 8389 + 155834243 T
e nomLeu3.chr18            81406129  0 - 104879549 C
e triMan1.JH594766            29509  0 +   6345240 C
e cerSim1.JH767738          9917048  0 +  34209287 C

a score=16700.000000
s hg38.chr8_KI270814v1_alt   139884 6 +    141812 aatagg
s panTro4.chr8             55042374 6 + 143986469 aatagg
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59183394 6 + 153482349 aatagg
i ponAbe2.chr8             C 0 C 0
s rheMac3.chr8             61706565 6 + 150158102 aatagg
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58380307 6 + 146850525 aatggg
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53301987 6 + 139301422 aatagg
i chlSab2.chr8             C 0 C 0
s calJac3.chr7             33721043 6 + 155834243 gatagg
i calJac3.chr7             T 8389 C 0
s otoGar3.GL873762          1574036 2 -   1847653 ----ga
i otoGar3.GL873762         I 1 I 4
s equCab2.chr29            10883936 6 +  33672925 gatagg
i equCab2.chr29            C 0 C 0
s cerSim1.JH767738          9917048 6 +  34209287 gatagg
i cerSim1.JH767738         C 0 C 0
e nomLeu3.chr18            81406129 0 - 104879549 C
e triMan1.JH594766            29509 0 +   6345240 C

a score=399222.000000
s hg38.chr8_KI270814v1_alt   139890 137 +    141812 aaacattttagaccttttggtctctgtcatatctattcaattctgccattgcagtgtgaaaaaaatcataa--agtgta-gtaagcaaataagcataactgtactccagtaaaacttcatatacaaggctatattgaagg
s panTro4.chr8             55042380 137 + 143986469 aaacattttagacctttcggtctctgtcatatctattcaattctgccattgcagtgtgaaaaaaatcataa--agtgta-gtaagcaaataagcataactgtactccagtaaaacttcatatacaaggctatattgaagg
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59183400 137 + 153482349 aaacattttaggccttttggtctctgtcatatctactcaattctgccattgcagtgtgaaaaaaatcataa--agtgta-gtaagcaaataggtatgactgtactccagtaaaacttcatatacaaggctatattgaagg
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81406129 138 - 104879549 gaatatgttggtccatgtggtctctattacagctattcaactctgccattgtagggtgaaaggagtcatagataatgta--tgggcaaagaggcatgattgtactccaataaaagtttgtataaaaaaccatttagtaag
i nomLeu3.chr18            C 0 C 0
s rheMac3.chr8             61706571 137 + 150158102 aaacgttttaggccatttggtctctatcgtatctattcaattctgtcactgcagtgtgaaaaatgtcataa--aatgtg-gtaagcaaataggcataattgtactccaataaaacttaacatacaaggctatattgaagg
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58380313 137 + 146850525 aaacgttttaggccatttggtctctatcatatctattgaattctgtcactgcagtgtgaaaaatgtcataa--aatgtg-gtaagcaaataggcataattgtactccaataaaacttaacatgcaaggctatattgaagg
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53301993 137 + 139301422 aaacactttaggccatttggtctctatcatatctattcaattctgtcattgcagtgtgaaaaaggtcataa--aaggta-gtaagcaaataggcataattgtactccaataaaacttaacatacaagactatattgaagg
i chlSab2.chr8             C 0 C 0
s calJac3.chr7             33721049 121 + 155834243 aaatatgttagaccatgaggtctctatcacagctgttcaactctgccattgtaaggtgaaagaagtcatat-------------------aggcatgattatactctaataaaactttgtaagtaaaacgatttggtaag
i calJac3.chr7             C 0 C 0
s otoGar3.GL873762          1574042 138 -   1847653 aaacattttagaccatgtggtctctgtcatatctactcaagcctgccagtgtaatgtgaaagcagctatag--atcagatgtaagttaataggcattattgcactccagtaaaactttgttcatcaaaccatatgatagg
i otoGar3.GL873762         I 4 C 0
s equCab2.chr29            10883942 136 +  33672925 aagtattttaggctatgtggtctctctcctttctacttaactctgccactgtagtatgaaagcagtcatag--acaattcgtaagcacataggcctgcctgtgccccagtaacac--gatttacaaaaccagatggcagg
i equCab2.chr29            C 0 C 0
s cerSim1.JH767738          9917054 138 +  34209287 aaatatcttaggccatgtggtctctgtcatatctagtcaactcggccagtgtagtatgaaagcagtcatag--acaatatgtaaatgcataggcgtgactgtgccccaatgacacttgatttacaaaaccaagtggcagg
i cerSim1.JH767738         C 0 C 0
e triMan1.JH594766            29509   0 +   6345240 C

a score=767903.000000
s hg38.chr8_KI270814v1_alt   140027 293 +    141812 ctgcatttgacctttggcctgtagttttctgactcttCAT-----------ATGGAGGGTAGCCATGTAAAGAGGTTGAGAAACAAAGGAAG---TTTTGCAGTAGTTCATGCTATAGT-TTGTTTGTTTTGTGTCACCAGTTTGTGCATTAGTATCAATCTATTATAAAATTTTGACCCATCCAGGGTAAAATAAAT-AAGTT-AGAAG-CTAAGATTATACATTTAAACATGTGGGA-TTTTTTCTTGGCATTATTCTATTTTCA--------TTTTTTTGCT-GAATTTTTTTA---ACTTAAGAAATATGAATAATAATT
s panTro4.chr8             55042517 294 + 143986469 ctgcatttgacctttggcctgtagttttctgactcttCAT-----------ATGGAGGGTAGCCATGTAAAGAGGTTGAGAAACAAAGGAAG---TTTTGCAGTAGTTCATGCTGTAGT-TTGTTTGTTTTGTGTCACCAGTTTGTGCATTAGTATCAATCTATTATAAAATTTTGACCCATCCAGGGTAAAATAAAT-AAGTT-AGAAG-CTAAGATTACACATTTAAACATGTGGGA-TTTTTTCTTGGCATTATTCTATCTTCA-------TTTTTTTTGCT-GAATTTTTTTA---ACTTAAGAAATATGAATAATAATT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59183537 285 + 153482349 ctgcatttgacctttggcctgtagttttctgactcttcat-----------atggagggtagccatgtaaagaggttgagaaacaaaggaagc--ttttgcagtagttcatgcTATAAT-TTGCTTGTTTTGTGTCACCAATTTGTGCATTAGTATCAATCTATTATAAAATTTTGACCCATCCAGGGTAAAATAAAT-AAGTT-AGAAG-CTCAGATTATACATTTAAACGTGTGGGATTTTTTTCTTGGCATTATTCTATTTTCA------TTTTTTTTTGCT-GAATTTTTTTA---AC------------AAGAATAATT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81406267 284 - 104879549 ctgaatttggcctgtggcctatag-tttctgacccttCATATAGAAGATAGATGGAGGATAATCACATAAAAAGATTTAAAGATGAAGC------TTTTGTAGTAGTTCATGTGATAGTCTTTTTTTTTTTTTGTAACCAATCTGTGGCCTCGTATCAATCTATTATGAAAGTTTGACCCATCAAGGGTAAAATGAATCAAGTTCAGAAG-CT--------ACAATTAAACATGTAGG--TCCTTCTTTGGCATTATTTTATTTTGA--------TT-----------AATTTTTTA---ACTTAAAAAATAAGAACAGTAATT
i nomLeu3.chr18            C 0 C 0
s rheMac3.chr8             61706708 307 + 150158102 ctgcatttgacctttggcctgtagttttctgacACTTCATAGAGAGCATAGTTGGAGGGTAGCCATGTAAAGAGGTTGAGAAACAACGGAAGC--TTTTGCAGTAGTTCATGCTATAGT-TTGTTTGTTTTGTGTCACCAATTTGTGCATTACTATCAATCTATT-AAAATTTTTGACCCATCCGGGGTTAAATAAGT-AAGTT-AGAAG-CTCAGATTATACATTTAAACATGTGAAA-CTTTTTCTTGGCATTATTCTATTTTCA-----TTTGTTTTTTGCT-GAAGTTTTTAA---ACTTAAGATATAAGAATAATAATT
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58380450 312 + 146850525 ctgcatttgacctttggcctgtagttttctgacacttCATAGAGAGCATAGTTGGAGGGTAGCCATGTAAAGAGGTTGAGAAACAACGGAAGC--TTTTGCAGTAGTTCATGCTATAGT-TTGTTTGTTTTGTGTCACCAATTTGTGCATTACTATCAATCTATT-AAAATTTTTGACCCATCCGGGGTTAAATAAGT-AAGTT-AGAAG-CTCAGATTATACATTTAAACATGTGGAA-CTTTTTCTTGGCAttattctattttcatttttttttttttttGCT-GAATTTTTTAA---ACTTAAGATATAAGAATAATAATT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53302130 301 + 139301422 ctgtatttgacctttagcctgtagttttctgacACTTCATAGAGAGCATAGTTGGAGGGTAGCCATGTAAAGAAGTTGAGAAAAAACGGAAGC--TTTTGCAGTAGTTCATGCTATA-----GTTTGTTTTGTATCACCAATTTGTGCATTACTATCAATCTATTAAAAAATTTTGACCCATCCGGGGTTAAATAAAT-AAGTT-AGAAG-CTCAGATTATACATTTAAACATGTGGAA-CTTTTTCTTGGCATTATTCTATTTTCA-------TTTTTTTTGCT-GAATTTTTTAA---ACTTAAGATAT-AGAATAGTAATT
i chlSab2.chr8             C 0 C 0
s calJac3.chr7             33721170 300 + 155834243 ttgaatttagtctgtggcctatggtttgctggccGTTCATGTAGAAGATAATTGTAGGGTAATCACATAATAAGATTTAAAGGCAAAGGAAGCTTTTTTATAGTAGTTCATGCTATAGT-------CTTTTTTGTCACCAG--TGTGGCCTAGTATCAATCTATTATGAAAGTTTGACCCATC-AGGCAAAAATGAATCAAGTTCGGAAG-CTCAATTGATATATTTAAACATGTAGG--TCTTTCTATACCattattttattttta-------tttgttttact-gaatattttta---acttaaaaaataaCAATAGTGATT
i calJac3.chr7             C 0 C 0
s otoGar3.GL873762          1574180 302 -   1847653 ctggatttggcctgtggcctgttatttgctgacccctCGTACAGGGGATAGATGGAAAGGAACCATGTACAAAGACCAAGAGACAAAG-------TTTTGCAGATGTCAAAACCATAAT-TTCCTTGTCATATATAAATAATCCTGAgactagcatcagtctgttaagaagttttcacccattcatggtgaaata----aAGTT-AGGAGCCTCTATTTATTCATTTGAAAATGTTGGT-CTTTTTCTTGGCATTATAC-ATGTTCA-CTGGTTTTTGCTTTTCT---TTTTTTTTA---ATTTAAGAAATAACAATAATAGTT
i otoGar3.GL873762         C 0 C 0
s equCab2.chr29            10884078 256 +  33672925 ttggatttggcctgtgggccatcatttgctgaccccttgtgtagaggatggatagaaggaagccatgtac-gagactgggagacaaaggaggc--tttt-------------------C-TTCCTT--------------------GAACGAGTATCAGTCCATTATGAAGTTGTCACCCATCCATGGTGGAGTAA---AAGTCAAGAAG-CTCAATTTATTCAATTTAAAATATT-GT-CTTTTTCTAGGCATTATGTCTTTCTCa-------------------aaatttttttattcatttaagaaataataataataCTT
i equCab2.chr29            C 0 C 0
s cerSim1.JH767738          9917192 270 +  34209287 ttggatttggtctgtgggccgtcatttgctgaccccttatatagagaatggatggaaggaagccatgcaa-gagactgggagacacaggaagc--ttttg------------------c-TTCCTT--------------------GGACTAGTATCAATCCATTATGAAGGTTTCACCCAGCCATGGTGAAATAA---ATGTCAAGAGG-CTCAATTTATTCAGTTTAAAATATTGGT-CTTTTTCTAGACCTTTTGTCTTTCTCA-------TTTGTTTTGCTTAAAATTTTTTATTCATTTAAGAAGTAATAGTAATACTT
i cerSim1.JH767738         C 0 C 0
s triMan1.JH594766            29509 298 +   6345240 ctgaatttgccccgtcggttacagtttgctgacccctCACATAAAATATACATTGAAGGAAACCAAGTCAAGAGACTGGTAGACAAAGGAGGC--GTTTGCGGTAGTCAAAACCACAGC-ttcctc-------agcaccagtccttggactagtatcagtccattatgaagttttcacacatctgta-tgaaatgagtaaaGTTTGGATG-CTCAGTTTACTCGTTTTAAAACACTGGT-CTTTTTCTTGGCATTTTGTCTTCCTCA-------TTTGTTTTCCTTAAAATCTTTTC---GTTTAGAAAAT---AATAATGGTT
i triMan1.JH594766         C 0 N 0

a score=5422.000000
s hg38.chr8_KI270814v1_alt   140320 2 +    141812 GG
s panTro4.chr8             55042811 2 + 143986469 GG
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59183822 2 + 153482349 GG
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81406551 2 - 104879549 TG
i nomLeu3.chr18            C 0 C 0
s rheMac3.chr8             61707015 2 + 150158102 GG
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58380762 2 + 146850525 GG
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53302431 2 + 139301422 GG
i chlSab2.chr8             C 0 C 0
s calJac3.chr7             33721470 2 + 155834243 GG
i calJac3.chr7             C 0 C 0
s otoGar3.GL873762          1574482 2 -   1847653 GC
i otoGar3.GL873762         C 0 C 0
s equCab2.chr29            10884334 2 +  33672925 AG
i equCab2.chr29            C 0 I 153
s cerSim1.JH767738          9917462 2 +  34209287 GG
i cerSim1.JH767738         C 0 I 153

a score=8790.000000
s hg38.chr8_KI270814v1_alt   140322 2 +    141812 TA
s panTro4.chr8             55042813 2 + 143986469 TA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59183824 2 + 153482349 TA
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81406553 2 - 104879549 TA
i nomLeu3.chr18            C 0 I 287
s rheMac3.chr8             61707017 2 + 150158102 TA
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58380764 2 + 146850525 TA
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53302433 2 + 139301422 TA
i chlSab2.chr8             C 0 C 0
s calJac3.chr7             33721472 2 + 155834243 TA
i calJac3.chr7             C 0 C 0
s otoGar3.GL873762          1574484 2 -   1847653 TG
i otoGar3.GL873762         C 0 I 164
s equCab2.chr29            10884489 2 +  33672925 ta
i equCab2.chr29            I 153 C 0
s cerSim1.JH767738          9917617 2 +  34209287 ta
i cerSim1.JH767738         I 153 C 0

a score=9218.000000
s hg38.chr8_KI270814v1_alt   140324 4 +    141812 CAAT
s panTro4.chr8             55042815 4 + 143986469 CAAT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59183826 4 + 153482349 CAAT
i ponAbe2.chr8             C 0 C 0
s rheMac3.chr8             61707019 4 + 150158102 TAAT
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58380766 4 + 146850525 TAAT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53302435 4 + 139301422 TAAT
i chlSab2.chr8             C 0 C 0
s calJac3.chr7             33721474 4 + 155834243 CAGT
i calJac3.chr7             C 0 N 0
s otoGar3.GL873762          1574650 4 -   1847653 TAAT
i otoGar3.GL873762         I 164 C 0
s equCab2.chr29            10884491 4 +  33672925 caag
i equCab2.chr29            C 0 C 0
s cerSim1.JH767738          9917619 4 +  34209287 caag
i cerSim1.JH767738         C 0 C 0
e nomLeu3.chr18            81406555 287 - 104879549 I

a score=1181.000000
s hg38.chr8_KI270814v1_alt   140328 2 +    141812 GT
s panTro4.chr8             55042819 2 + 143986469 GT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59183830 2 + 153482349 GT
i ponAbe2.chr8             C 0 C 0
s rheMac3.chr8             61707023 2 + 150158102 GA
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58380770 2 + 146850525 GA
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53302439 2 + 139301422 GA
i chlSab2.chr8             C 0 C 0
s otoGar3.GL873762          1574654 2 -   1847653 AT
i otoGar3.GL873762         C 0 C 0
s equCab2.chr29            10884495 2 +  33672925 gt
i equCab2.chr29            C 0 C 0
s cerSim1.JH767738          9917623 2 +  34209287 at
i cerSim1.JH767738         C 0 C 0
e nomLeu3.chr18            81406555 287 - 104879549 I

a score=11592.000000
s hg38.chr8_KI270814v1_alt   140330 3 +    141812 GAT
s panTro4.chr8             55042821 3 + 143986469 GAT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59183832 3 + 153482349 GAT
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81406842 3 - 104879549 gac
i nomLeu3.chr18            I 287 C 0
s rheMac3.chr8             61707025 3 + 150158102 GAT
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58380772 3 + 146850525 GAT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53302441 3 + 139301422 GAT
i chlSab2.chr8             C 0 C 0
s otoGar3.GL873762          1574656 3 -   1847653 GAT
i otoGar3.GL873762         C 0 I 133
s equCab2.chr29            10884497 3 +  33672925 gat
i equCab2.chr29            C 0 I 98
s cerSim1.JH767738          9917625 3 +  34209287 gat
i cerSim1.JH767738         C 0 I 98

a score=876041.000000
s hg38.chr8_KI270814v1_alt   140333 338 +    141812 AGATTAAC--------------ttatttctatacatgttgaggtcaaagaaatattcatgtaggatattttcagct----ggtaattggataataggcatttagagctggagctag-actctatggttgaagttgcagacttagaatgattttattataattattagacaaagccatagatcttaatgagcttgtccataatgcagaatatgtagaagaagtagaagaaagcccttgacaaaacccagggaatattaacatttttc--------agaggaaaaagagttggtaaaagagactgagcagtggcaagagaaaagtaggagcaaagtcagagggagtgatgt-tgc--aaacatttttgga-
s panTro4.chr8             55042824 338 + 143986469 AGATTAAC--------------ttatttctatacatgttgaggtcaaagaaatattcatgtaggatattttcagct----ggtaattggataataggcatttagagctgaagctag-actctatggttgaagttgcagacttagaatgattttattataattattagacaaagccatagatcttaatgagcttgtccataatgcagaatatgtagaagaagtagaagaaagcccttgacaaaacccagggaatattaacatttttc--------agaggaaaaagagttggtaaaagagactgagcagtggcaagagaaaagtaggagcaaagtcagagggagtgatgt-tgc--aaacatttttgga-
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59183835 338 + 153482349 AGATTAAC--------------ttatttctatacatgttgaggtcaaagaaatattcatgtaggatattttcagtt----ggtaattggataataggcatttctagctggagctag-actctatggttgaagttgcagacttagaatgattttattataattattagacaaagccatagatcttaatgagcttgtccataatgcagaatatgtagaagaagtagaagaaagcccttgacaaaacccagggaatattaacattttgc--------agaggaaaaagagttggtaaaagagactgagaagtggcaagagaaaagtaggagtaaagtcagagggagtgatgt-tgc--aaacatttttgaa-
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81406845 329 - 104879549 agaccaac--------------agttttctttacatattgagttcagtgaaacattcatgtgggatactttcagta----ggtaattggattatatgcatttctagctggagacag-aa-ctctggttgaagatgcaggcttagaataattttattataattattaggcaaagccatagatctcaatgagcttatccacgatgc---------agaagatgtagaataaagccattgacaaaaccctgggaatatcaacatttcac-------aagagtcaaaggacttggtaaaggagactgagcagtggttaaagaaacgtaggagaggagtctgagaaagtgATGT-TGC--AAATTTCTTTTAA-
i nomLeu3.chr18            C 0 C 0
s rheMac3.chr8             61707028 341 + 150158102 AGATTAAC--------------TTATTTCCATATATGTTGAGGTCAAAGaaacattcatgtaggatattttcagtt----ggtaattggataataggcatttctacctggagctagaactctatggttgaagttgcagacttagaataattttattataattattagacaaagccatagatcttaatgagcttgtccataatgcagaatatgtagaagaaatagaagaaagcctttgacaaaacccagggaatattaacaatatgc--------agaggaaaaagagttggtaaaagagactgaacagtggcaagagaaaagcaggagcaaagtcagagggagtgatgt-tgcaaaaaaatttttaca-
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58380775 341 + 146850525 AGATTAAC--------------TTATTTCCATATATGTTGAGGTCAAAGaaacattcatgtaggatattttcagtt----ggtaattggataataggcatttctacctggagctagaactctatggttgaagttgcagacttagaataattttattataattcttagacaaagccatagatcttaatgagcttgtccataatgcagaatatgtagaagaaatagaagaaagcccttgacaaaacccagggaatattaacaatatgc--------agaggaaaaagagttggtaaaagagactgaacagtggcaagagaaaagcaggagcaaagtcagagggagtgatgt-tgcaaaaaaatttttaca-
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53302444 337 + 139301422 AGATTAAC--------------TTATTTCCATATACATTGAGGTCAAAGaaacattcatgtaggatattttcagtt----ggtaattggataataggcatttctagctggagctagaactctatggctgaagttgcagacttaggataattttattataattattagacaaagtcatagatcttaatgagcttgtccataatgcagaatatgtagaag---tagaagaaagcccttgacaaaacccgggaaatattaacattttgc--------agaggaaaaagagttggtaaaagagactgaatagtggcaagagaaaagtaggagcaaagtcagagggagtgatgt-tgc-aaaaatttcttaaa-
i chlSab2.chr8             C 0 C 0
s otoGar3.GL873762          1574792 340 -   1847653 AGATCAACAGGCACGACATCCTTTTTTTCTATATATGTTGAGTTTAATGGAATATTCACGTA-GACATTTTCAGTA----GGCAATTGGCTGATAAGCATTTTTAGGTGGAGATAGAACACTGAGGTTAAAGATGCAACCTTAGAATAATGTTGTAA-------TAGGCAAAGTTATACATCTGAATGGGCTTGTCTACGATGAGGAAGATGTAGAAAAAGAAGGGGAG------TGAGACAAACTTGGAAAAATCCACATTTCCT--------AGAGGAAAAGAAGGTCGTAAAGGAGAATGAGTGAGGGCTGGAGAAAACTGGGAGAGGAATCAGAGGAAATGATATATAT--ATAtttttttgag-
i otoGar3.GL873762         I 133 I 149
s equCab2.chr29            10884598 346 +  33672925 agaccaac-------------tttatttcagttcatgttgagtttgatggaatagccatgtaggatattttcagtaattggataagtgggtaataggagtttctagctagagatagagctctgaggtgggagatgcaaatttgaaattatctgattataattattggacaaagtcatagatctgaaggagcttgtccctgagggagaacatgtagagta---agaagaaggccagtgacaaaaccctgggaataccagtatttaaggagtggagagaggaggaggagttagtaaagaagactggggcgtggctagagaaaagtaggagaggaattagaggaagtgatac-tgc--aaaaa----taaag
i equCab2.chr29            I 98 C 0
s cerSim1.JH767738          9917726 336 +  34209287 agaccagc------------tttttttttagtacatgttgagtttgatggaatatccatgtagggtattttcagtaattggataattggataataggagtttttagctagagatagagctctgagattggagatgcaaatttgaaataatcggattataatttttgggcaaagtcatagatctgaacgagctagtccatgatggagaacatgtagaatg---agaagaaggccagagacaaaaccctgggaataccaatatttaaggagtggagagaggagaaggagttagtaaagaagactga---gtggctggagaaaagtaggagaggcactagaggaagtaatat-tgc--aa------------
i cerSim1.JH767738         I 98 C 0

a score=506303.000000
s hg38.chr8_KI270814v1_alt   140671 261 +    141812 aagatgagtatttcaagcatgaagTATCAATACTAACAG----------CAATAAGTAAATTGGATTTAGCTTTTAAAAGCTCTTTGGTGGTACCCTTTTTTAAAAAA--AA---------------------------------TTTAGAGTTCT------------TAGGTGTA--CTATTAATATGATTGATACTTCTGGTGGTCAAG----------------AATCTAC-CAAGATGCCAAAAGTTACCAA-CTTCTTTGCAG---------C----------TA-------CATACACAGG--GTCAGAGAATGTT-ATTTAGACTAATGAGTACATGTGTCAACA-TTTTCC-------AGGACTGTC
s panTro4.chr8             55043162 259 + 143986469 aagatgagtatttcaagcacgaagTATCAATACTAACAG----------CAATAAGTAAATTGGATGTAGCTTTTAAAAGCTCTTTGGTGGTACCCTTTTTTAAAAAA--AA---------------------------------TTTAGAGTTCT------------TAGGTGTA--CTATTAATATGATTGATACTTCTGGTGGTCAAG----------------AATCTAC-CAAGATGCCAAAAGTTACCAA-CTTCTTTGCAG---------C----------TA-------CAT--GCAGG--GTCAGAGAATGTT-ATCTAGACTAATGAGTACATGTGTCAACA-TTTTCC-------AGGACTGTC
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59184173 261 + 153482349 aagatgagtatttcaagcaggaagtattgatACTAACAG----------CAAAAAGTAAATTGGATTTAGCTTTTAAAAGCTCTTTGGTAGTACCCTTTTTAAAAAAA--AA---------------------------------TTTAGAGTTCT------------TAGGTGTA--CTATTAATGTGATTGATACTTCTGGTGTTCAAG----------------AATCTAC-CAAGATGCCAAAAGTTACCAA-TTTTTTTGCAG---------C----------TA-------CATACACAGG--GTCAGAGAATGTT-ATCTAGACTAATGAGTACATGTGTCAACA-TTTTCC-------AGGATTGTC
i ponAbe2.chr8             C 0 C 0
s nomLeu3.chr18            81407174 257 - 104879549 ATG-TAAGAATTTCAAGC----AGTAAAATTACT----------------GAAAAGTCTACTAGATTTAAC--TTACAAGTTCTTCAGTGGTAATCTGTTCAAAAGAATTAT---------------------------------TTTAGAGTTGT------------TAGGTATA--CTGTTGATGTGTTTGATATTTCTGGTACCCAAGAAG------------AAATCTCT-CAAGAT-------CTTACCTA-ACTTTTTGTAA---------CTAAAGCAGCATA-------CATACACAGGGAGTGGGAAAATG----TCTAGACTGGTGAGTACACATGCCAACATTTTTCC-------AGAattttc
i nomLeu3.chr18            C 0 N 0
s rheMac3.chr8             61707369 259 + 150158102 aagatgaatatttcaagcaggaagtatcgatACTAACAG----------CAAAAAGTAAATTGGATTTAGCTTTTAAAAGCTCTCTGGTGGTACCCTTTT--AAAAAA--AA---------------------------------TTTAGAGTTCT------------TGGGTGTA--CTATTAATGTGATTGATGCTTCTGGTGTTCAAG----------------AATCTAC-CAAGATGCCAAAAGTAACCAA-CTTTTTTGCAG---------C----------TA-------CATACACAGG--GTCAGGGAATGTT-ATCTAGACTAATGAGTACATGTGTCAACA-TTTTCC-------AGGATTGTC
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58381116 259 + 146850525 aagatgaatatttcaagcaggaagtatcgatACTAACAG----------CAAAAAGTAAATTGGATTTAGCTTTTAAAAGCTCTCTGGTGGTACCCTTTT--AAAAAA--AA---------------------------------TTTAGAGTTCT------------TGGGTGTA--CTATTAATGTGATTGATGCTTCTGGTGTTCAAG----------------AATCTAC-CAAGATGCCAAAAGTAACCAA-CTTTTTTGCAG---------C----------TA-------CATACACAGG--GTCAGGGAATGTT-ATCTAGACTAATGAGTACATGTGTCAACA-TTTTCC-------AGGATTGTC
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53302781 255 + 139301422 aagatgaatatttcaagcaggaagtatcgat----ACAG----------CAAAAAGTAAATTGGATTTAGCTTTTAAAAGCTCTCTGGTGGTACCCTTTT--AAAAAA--AA---------------------------------TTTAGAGTTCT------------TAGGTGTA--CTCTTAATGTGATTGATGCTTCTGGTGTTCGAG----------------AATCTAC-CAAGATGCCAAAAGTAACCAA-CTTTTTTGCAG---------C----------TA-------CATACACAGG--GTCAGGGAATGTT-TTCTAGACTAATGAGTACATGTGTCAACA-TTTTCC-------AGGATTGTC
i chlSab2.chr8             C 0 C 0
s otoGar3.GL873762          1575281 315 -   1847653 AAAGTGGGAATTTCAA--AGAGAGTATCAAT-TTGACAAGTAAGATTACTAAAAAGGAAGTTGGGTTGAATGTTTTAAAGCTCTTTAGTGGTAGCCTTTTCGAAACAA--AAAGTTCTGTTGTCTTCACCTCTGCAGTGTTTCTCCTTAAGCTTCTCTGAATATGAGGTAGGGATAAGCTCTTAA-GGGAGTGAACATTCCAGTG----------------------ATTCTATGTGAGGT----AAAGTCACAGG-TCACTTTGATG---------T----------TGTTCACATCATACATAGG--G-CAGAGAAAATT-ACTAGAACTA---AGTACAATTACTAACA-TCTTCCTTAGAAGAGGATTAGC
i otoGar3.GL873762         I 149 C 0
s equCab2.chr29            10884944 290 +  33672925 aaaatgagaacttcaag-agggagtatcaattgtatcaagtAAAAGTACTGAAAAGAAGGTTGGATTTAACTTTTAAAAGCTTTTTGCTGTTAAGTTTTTCAAAAGAACAAT---------------------------------TTTAGGCTTAT------------GAGGTCTA--CTGTTTACATGATTGATACTTCTGATGTCCAAATATGGAAAACACATCACATCT-C-CAAAGT-------CCTGCCTA-TTTTTTTGTAATGGCACCA-T----------TA-------CCCACACAGG--GTCAGGGAAAATTGGCATAGACTGGTGAGTGCACTTGCCAACATTTTTCC-------AGAATTGTC
i equCab2.chr29            C 0 C 0
s cerSim1.JH767738          9918062 293 +  34209287 aaaaggagaatttcaaa-agggagtagcaattgtaccaagtaaaattactgagaagaaagttggatttaacttttaaaagctctttggtgataactttttcaaaagaacaat---------------------------------tttagagttgt------------gaggTCTG--CTATTTACATGATTGGTACTTCTGATGTCCAAATATGGAAAAATAATCACATCTAC-CAAGGT-------CCTACCTATTTTTTTTGTAACTGTACCACC----------TA-------CCCACACAAG--GTCAGGAAAAATTGGTTTAGACTGGTGAGTACACTTGCCCGCATTTTTCC-------AGAATTGTC
i cerSim1.JH767738         C 0 C 0

a score=13104.000000
s hg38.chr8_KI270814v1_alt   140932 4 +    141812 AAAA
s panTro4.chr8             55043421 4 + 143986469 AAAA
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59184434 4 + 153482349 AAAA
i ponAbe2.chr8             C 0 C 0
s rheMac3.chr8             61707628 4 + 150158102 AAAA
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58381375 4 + 146850525 AAAA
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53303036 4 + 139301422 AAAA
i chlSab2.chr8             C 0 C 0
s otoGar3.GL873762          1575596 4 -   1847653 AAAA
i otoGar3.GL873762         C 0 N 0
s equCab2.chr29            10885234 4 +  33672925 AAAA
i equCab2.chr29            C 0 C 0
s cerSim1.JH767738          9918355 4 +  34209287 AAAA
i cerSim1.JH767738         C 0 C 0

a score=1054239.000000
s hg38.chr8_KI270814v1_alt   140936 590 +    141812 CCTAAGGATCAGGTGTGAAGAAAGATCTTGTCTTTCTTAGCTGCTTCTTGTGGAAATACTTCATTTGTATTTCCTGAAAG-----AAAGAATGCTTTCAGTCACTCTAAAAGAAAAACCTGGTACCAACAACTAGAAGCTACTGTCAGAT----GCACATATACCCCTCCTCAATACAACCGTGTTTTG--AGAGTTTCACATTTGAATCAGAAGTAGTTTACAAGCCAGCAGCTTGGAGAAATTGACATTTTAATAATAATATATTGCAGACAACTAATATAATGTCATATGGGGAGATATGGAGGGAAATATGGAGATATGCTTTATATACTAGTTTTCAGTATTCTGGGAATTTTAGGGATATCTGTAGAAAAGTTAGTACCTGTC--TTTTTGTTAGTGCAATTCCCCTTTAT----------TTTGCTATCTTCTGTTATCTCTGCTTTTACTGCTTCCTTTTGAATTTCATCCTTAAAGAAAGT----------------ACTTTTAGAACACATTTTT-AAGATATGTATGTTTGACAAATGTGTATTATTTCCTTTTAAAATAATATACTCCATATCCTAAAGTATATCTGGTATTCTA--TGTTTCTAAAACTGAATTTCTTT
s panTro4.chr8             55043425 590 + 143986469 CCTAAGGGTCAGGTGTGAAGAAAGATCTTGTCTTTCTTAGCTGCTTCTTGTGGAAATACTTCATTTGTATTTCCTGAAAG-----AAAGAATGCTTTCAGTCACTCTAAAAGAAAAACCTGGTACCAACAACTAGAAGCTACTGTCAGAT----GCACATATACCCCTCGTCAATACAACCGTGTTTTG--AGAGTTTCACATTTGAATCAGAAGTAGTTTACAAACCAGCAGCTTGGAGAAATTGACATTTTAATAATAATATATTGCAGACAACTAATATAATGTCATATGGGGAGATATGGAGGGAAATATGGAGATATGCTTTATATACTAGTTTTCAGTATTCTGGGAATTTTAGGGATATCTGTAGAAAAGTTAGTACCTGTC--TTTTTGTTAGTGCAACTCCCCTTTAT----------TTTGCTATCTTCTGTTATCTCTGCTTTTACTGCTTCCTTTTGAATTTCATCCTTAAAGAAAGT----------------ACTTTTAGAACACATTTTT-AAGATATGTATGTTTGACAAATGTGTATTATTTCCTTTTAAAATAATATACTCCATATCCTAAAGTATATCTGGTATTCTA--TGTTTCTGAAACTGAATTTCTTT
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59184438 590 + 153482349 CTTAAGGGTCAGGTGCAAAGAAAGACCTTGTCTTTCTTAGCTGCTTCTTGTGAAAATACTTCATTTGTATTTCCTGAAAG-----AAAGAATGCTTTCAGTCACTCTGAAAGAAAAACCTGGTACCAACAACTAGAAGCTACTTTCAGAT----GCACATATACCCCCCCTCAATACAACTGTGTTTTG--AGAGTTTCACATTTGAATCAGAAGTAGTTTACAAACCAGCAGCTTGGAGAAATTGACATTTTAATAATAATATATTGCAGACAACTAATATAATGTCATATGGAGAGATATGGAGGGAAATATGGAGATATGCTTTATATACTAGTTTTCAGTATTCTGGGAATTTTAGGGATATCTGTAGAAAAGTTAGTACCTGTC--TTTTTGTTAGTGCAATTCCCCTTTAT----------TTTGCTGTCTTCTGTTATCTCTGCTTTTACTGCTTCCTTTTGAATTTCATCCTTAAAGAAAGT----------------ACTTTTAGAACACAATTTT-AAGATATGTATGTTTGACAAATGTGTATTATTTCCTTTTAAAATAATTGACTCCCTATCCTAAAGTATATCTTGTATTCTA--TGTTTCTAAAACTGAATCTCTTT
i ponAbe2.chr8             C 0 C 0
s rheMac3.chr8             61707632 594 + 150158102 CCTAATGGTCAGGTGTGAAGAAAGATCTTGTCTTTCTTAGCTGCTTCTTGTGGAAATACTTCATTTGTATTTCCTGAAAG----AAAAAAATGCTTTCAGTCACTCTGAAACAAAAACCTGGTAGCAAGAACTAGAAGCTACTGTCAGAT----GCACATATACTCCCCCTCAATACAACTGTGTTTTG--AGAGTTTCACATTTGAATCAGAAGTAGTTTATAAACCAGCGGCTTGGAGAAGTGGACATTTTAATAATAATATATTGCAGACAAGTAATATAATGTCGTATGGAGAGATACAGAGGGAAATATGGAGATATGCTTTAAATACTAGTTTTCAGTATTCTGGGAATTTTAGGGATATCTGTAGAAAAGCTGTTACACATC--TTTTTGTTAGTGCAATTCCTCTTTAT----------TTTGCTATCTTCTGTTATCTCTGCTTTTACTGCTTCCTTTTGAATTTCATCCTTAAAGAAAGT----------------ACTCTTAGAACACATTTTTAAAGATATGTATGTTTGACAAATTTGTATTATTTCCTTTTAAAATAATTGACTCCCTATCCTAAAGTATATCTTGTATTCTCTTTGTTCCTGAAAATGAATCTCTTT
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58381379 594 + 146850525 CCTAAGGGTCAGGTGTGAAGAAAGATCTTGTCTTTCTTAGCTGCTTCTTGTGGAAATACTTCATTTGTATTTCCTGAAAG----AAAAAAATGCTTTCAGTCACTCTGAAACAAAAACCTGGTAGCAAGAACTAGAAGCTACTGTCAGAT----GCACATATACTCCCCCTCAATACAACTGTGTTTTG--AGAGTTTCACATTTGAATCAGAAGTAGTTTATAAACCAGCGGCTTGGAGAAGTGGACATTTTAATAATAATATATTGCAGACAACTAATATAATGTCGTATGGAGAGATACAGAGGGAAATATGGAGATATGCTTTAAATACTAGTTTTCAGTATTCTGGGAATTTTAGGGATATCTGTAGAAAAGCTGGTACCCATC--TTTTTGTTAGTGCAATTCCTCTTTAT----------TTTGCTATCTTCTGTTATCTCTGCTTTTACTGCTTCCTTTTGAATTTCATCCTTAAAGAAAGT----------------ACTCTTAGAACACATTTTTAAAGATATGTATGTTTGACAAATTTGTATTATTTCCTTTTAAAATAATTGACTCCCTATCCTAAAGTATATCTTGTATTCTCTTTGTTCCTGAAACTGAATCTCTTT
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53303040 594 + 139301422 CCAAAGGGTCAGGCGTGAAGAAACATCTTGTCTTTCTTAGCTGCTTCTTGTGGAAATACTTCATTTGTATTTCCTGAAAG----AAAAAAATGCTTTCAGTCACTCTGAAACAAAAACCTGGTAGCAAGAACTAGAAGCTACTGTCAGAT----GCACGTATACTCCCCCTCAATACAACTGTGTTTTG--AGAGTTTCACATTTGAATCAGAAGTAGTTTACAAACCAGCGGCTTGGAGAAATGGACATTTTAATAATAATATATTGCAGACAACTAATATAGTGTCGTATGGAGAGATACAAAGGGAAATACGGAGATATGCTTTAAATACTAGTTTTCAGTATTCTGGGAATTTTAGGGATATCTGTAGAAAAGTTAGTACCCATC--TTTTTGTTAGTGCAATTCCCCTTTAT----------TTTGCTATCTTCTGTTATCTCTGCTTTTACTGCTTCCTTTTGAATTTCATCCTTAAAGAAAGT----------------ACTCTTAGAACACGTTTTTAAAGATATATATGTTTGACAAATGTGTATTATCTCCTTTTAAAATAATTGACTCCCTATCCTAAAGTATATCTTGTATTCTCTTTGTTCCTGAAACTGAATCTCTTT
i chlSab2.chr8             C 0 C 0
s equCab2.chr29            10885238 600 +  33672925 -GTAGGAGTCAAGTGTGAGGAAAAGGATTGTCTTTCTTACCTGCTTCTTGTGGAAATACTTGAGT----TTTTCTCAAGTCCTTCATCAGCTCCCTGGATGAATACTGAAACAAAAATCTGGCAGCAACAACTGGAAAACACTGTTAGATCCTACCTCTGATATGGAATCATGTCATAGGCATGTTTTGACAGAGTTTTAAATTTTGATCAGAAATAGTTTACAGACCAGCAGTTTGGAAAAACT-ACATCTTTTAAATATTTTATTGCAGAAGACTAATATAATACC--AAGGTGAAA---------ATATAAGGTGATATGCTGAATATACTAGTTCTCAATGGTTTGGGAGTTCTAATGATGTCAGTAAAAAAGTCAGTACCTGACTGTTTTTGTTAGTGCTGCCTCTCTTGATTCTCTGT--ATTTGCCGCCTTCTAATATCTCTGCTTTTACTGCTGCCTTCTGAATTTCATCTCTAAGGAAAATTGTCTTGGAATTGACAGTTGTTAGAATATATTTCT-AACATGTGTATGTTTGACAGATCTGTA-TGTTTCC-TTTAAGGTAATTGGGTACTTAACCTAAAGTTTATCTCATATTGTGTTA----------GTGGAttttttt
i equCab2.chr29            C 0 N 0
s cerSim1.JH767738          9918359 614 +  34209287 CCTAGGAGTAAAGTGTGAGGAAAAGTGTTGTCTTTCTTACCTGCTTCTCGTGGAAATACTTGAGT----TTTTCTTAAGTCCTTGGTAAGCTCCCTGGATGAATACCAAAACAAAAATCTGGCAGCAACAACTGGAAGCCATTGTCAGACCCTAGCTCCGATATGGAATCATGACACAGCCATGTTTTGACAGAGTTTTAAATTTTGATCAGAAATAGTTTACAGATCAGCAGTTTGGAAAAACTGACATCTTTTAAATATTTTGTTGCAGAAAACTAATATAATACC--AAGGAGACA---------GTATAAGATGATATGCTGAATATACTAGTCCTCAATAGTTTGAAAATTCTGATGATGTTAG-AAAAAAGGCAGTACCTGACTATTTTTGTTAGTGCTGCCTCTCTTGCTTCTCTTTTCATTTGCCTTCTTCTAATATCTCTGCTTTTACTGCTGCCTTCTGAATTTCATCTCTAAGGAAAATTGTCTTGGAATTGACTACTGTTAGAATACATTGCT-AACATATGTATGTTTGACAAATGTGTA-TGTTTCCTTTTAAGGTAATTGGCTACCTAACCTAAAGTTTATCTCATATTCTATTACTTTCTTATGCTAAACTTCTTT
i cerSim1.JH767738         C 0 C 0

a score=196323.000000
s hg38.chr8_KI270814v1_alt   141526 125 +    141812 ATATGCATACCATAGTGACAGTGTCACTGATAATgctctgccaagattt-taagtgtcttctcaattgtcaagctcaaatt--gttttatctgaaatagttttaatatgaagt--ttttttctggtatta
s panTro4.chr8             55044015 125 + 143986469 ATATGCATACCATAGTGACAGTGTCACTGATAATgctctgccaagattt-taagtgtcttctcaattgtcaagctcaaatt--gttttatctgaaatagttttaatatgaagt--ttttttctggtatta
i panTro4.chr8             C 0 C 0
s ponAbe2.chr8             59185028 125 + 153482349 ATATGCATACCATAGTGACAGTGTCACTGATAATGCTTTGCCAAGATTT-TAAGTGTCTTCTCAGTTGTCAAGCTCAAATT--GTTTTATCTGAAATAGTTTTAATATGAAGT--TTTTTTCTGGTAGTA
i ponAbe2.chr8             C 0 C 0
s rheMac3.chr8             61708226 125 + 150158102 ATATGCATACCGTAGTGACAGTGTCACTGATAATgctctgccaagattt-tgagtgtcttctgaatggtcaggctcaaatt--gttgtatctgaaatagttttagtatgaagt--ttttttctggtatta
i rheMac3.chr8             C 0 C 0
s macFas5.chr8             58381973 125 + 146850525 ATATGCATACCGTAGTGACAGTGTCACTGATAATgctctgccaagattt-tgagtgtcttctgaatggtcaggctcaaatt--gttgtatctgaaatagttttagtatgaagt--ttttttctggtatta
i macFas5.chr8             C 0 C 0
s chlSab2.chr8             53303634 125 + 139301422 ATATGCATACCGTAGTGACAGTGTCACTGATAATgctctgccaagattt-tgagcgtcttctgaattgtcaagctcaaatt--gttgtatctgaaatagttttagtatgaagt--ttttttctggtatta
i chlSab2.chr8             C 0 C 0
s cerSim1.JH767738          9918973 129 +  34209287 ATATCTGTACCACAGTGACAGTGTTACTGG-GATGGTCTGCcaagatttaaaaatttcttctggactgtcaaatacaaattaagttttgtctggcatagttttaatgtgaagtgctttttgttgtTGTTA
i cerSim1.JH767738         C 0 N 0

a score=207408.000000
s hg38.chr8_KI270814v1_alt   141651 161 +    141812 tatttcttcagaaattggtaatctgtgATTTAACTAGATTATGAGGTAAAATTCAATTACCATATTTATAAGTAAGTTGAAAGTTTGATTGATTTTTGATGGTTAAATCCACAATTTATGGGGAGCAGTAGATAAATCATCTTACATTGTGGAAGGAATTC
s panTro4.chr8             55044140 161 + 143986469 tatttcttcagaaattggtaatctgtgATTTAACTAGATTATGAGGTAAAATTCAATTACCATATTTATAAATAAGTTGAAAGTTTGATTGAGTTTTGATGGTTAAATCCACAATTTATGGGGAACAGTAGATAAATCATCTTACATTGTGGAAGGAATTC
i panTro4.chr8             C 0 N 0
s ponAbe2.chr8             59185153 161 + 153482349 TATTTCTTCAGAAATTGGTAATCTGTGATTTAACTAGATTATGAGATAAAATTCAATTACCATATTTATAAATAAGTTGAAAGTTTGATTGATTTTTGATGGTTAAATCCGCAATTTACGGGGAGCAGTAGATAAATCATCTTACATTGTGGAAGGAATTC
i ponAbe2.chr8             C 0 N 0
s rheMac3.chr8             61708351 161 + 150158102 tatttcttcagaaattggtaatctgtgATTTAACTAGGTTATGAGGTAAAATGCAATTACCATATTTATAAATAAGTTGAAAGTTTGATTCATTTTTGATGGTTAAACCCACAATTTAGTGGGAACAGCAGATAAATCATCTTACATTGAGGAAGGAATTC
i rheMac3.chr8             C 0 N 0
s macFas5.chr8             58382098 161 + 146850525 tatttcttcagaaattggtaatctgtgATTTAACTAGGTTATGAGGTAAAATGCAATTACCATATTTATAAATAAGTTGAAAGTTTGATTCATTTTTGATGGTTAAACCCACAATTTAGTGGGAACAGCAGATAAATCATCTTACATTGAGGAAGGAATTC
i macFas5.chr8             C 0 N 0
s chlSab2.chr8             53303759 161 + 139301422 tatttcttcagaaattggtaatctgtgATTTAACTAGGTTATGAGGTAAAATGCAATTACCATATTTATAAATAAGTTGAAGGTTTGATTCATTTTTGATGGTTAAACCCACAATTTAGTGGGAACAGCAGATAAATCATCTTATATTGAGGAAGGAATTC
i chlSab2.chr8             C 0 N 0

