##maf version=1 scoring=roast.v3.3
a score=83754.000000
s hg38.chr12_GL383550v2_alt        0 21 +    169178 AATTCAGGGGAGAAAAAGATG
s panTro4.chr12             31236115 21 + 134246214 AATTCAGGGGAGAAAAAGATG
i panTro4.chr12             N 0 C 0
s ponAbe2.chr12             78437606 21 - 136387465 AATTCAGGGGAGAAAAAGATG
i ponAbe2.chr12             N 0 C 0
s nomLeu3.chr11             54640035 21 + 123690457 AATTCAGGGGAGAAAAAGATG
i nomLeu3.chr11             N 0 C 0
s rheMac3.chr11             79530312 21 - 134985053 AATTCAGGGGAGAAAAAGATG
i rheMac3.chr11             N 0 C 0
s macFas5.chr11             80639624 21 - 137757926 AATTCAGGGGAGAAAAAGATG
i macFas5.chr11             N 0 C 0
s papAnu2.chr11             78590061 21 - 132286798 AATTCAGGGGAGAAAAAGATG
i papAnu2.chr11             N 0 C 0
s chlSab2.chr11             74520566 21 - 128539186 AATTCAGGGGAGAAAAAGATG
i chlSab2.chr11             N 0 C 0
s calJac3.chr9              77283017 21 - 124281992 AATTCAAGGGAGAAAAAGATG
i calJac3.chr9              N 0 C 0
s canFam3.chr10             67242513 21 -  69331447 AACTCAGGAGAGAAAAAGATC
i canFam3.chr10             N 0 C 0

a score=4193191.000000
s hg38.chr12_GL383550v2_alt        21 1005 +    169178  
s panTro4.chr12              31236136 1005 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78437627 1003 - 136387465  
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54640056 1004 + 123690457  
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79530333 1004 - 134985053  
i rheMac3.chr11             C 0 I 480
s macFas5.chr11              80639645 1005 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78590082 1005 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74520587 1005 - 128539186  
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77283038 1001 - 124281992  
i calJac3.chr9              C 0 C 0
s mm10.chr10                126788212 1001 + 130694993  
i mm10.chr10                N 0 C 0
s canFam3.chr10              67242534 1072 -  69331447  
i canFam3.chr10             C 0 C 0

a score=41357.000000
s hg38.chr12_GL383550v2_alt      1026 17 +    169178 TCTCAGACGTGGATTTT
s panTro4.chr12              31237141 17 + 134246214 TCTCAGACGTGGATTTT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78438630 17 - 136387465 tctcagacgtggatttt
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54641060 15 + 123690457 TCT--GACGTGGATTTT
i nomLeu3.chr11             C 0 C 0
s macFas5.chr11              80640650 17 - 137757926 TCTCAGACGTGGAtttt
i macFas5.chr11             C 0 I 561
s papAnu2.chr11              78591087 17 - 132286798 TCTCAGACGTGGATTTT
i papAnu2.chr11             C 0 I 1
s chlSab2.chr11              74521592 17 - 128539186 TCTCAGACATGGATTTT
i chlSab2.chr11             C 0 I 1
s calJac3.chr9               77284039 17 - 124281992 TCCCAGACATGGATTTT
i calJac3.chr9              C 0 C 0
s mm10.chr10                126789213  9 + 130694993 TCCTAGATG--------
i mm10.chr10                C 0 C 0
s canFam3.chr10              67243606 17 -  69331447 CCTCAGCTGTGGGGttt
i canFam3.chr10             C 0 I 361
e rheMac3.chr11              79531337 480 - 134985053 I

a score=2548.000000
s hg38.chr12_GL383550v2_alt      1043 1 +    169178 A
s panTro4.chr12              31237158 1 + 134246214 A
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78438647 1 - 136387465 A
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54641075 1 + 123690457 A
i nomLeu3.chr11             C 0 C 0
s papAnu2.chr11              78591105 1 - 132286798 A
i papAnu2.chr11             I 1 C 0
s chlSab2.chr11              74521610 1 - 128539186 A
i chlSab2.chr11             I 1 C 0
s calJac3.chr9               77284056 1 - 124281992 A
i calJac3.chr9              C 0 C 0
s mm10.chr10                126789222 1 + 130694993 A
i mm10.chr10                C 0 C 0
e canFam3.chr10              67243623 361 -  69331447 I
e macFas5.chr11              80640667 561 - 137757926 I
e rheMac3.chr11              79531337 480 - 134985053 I

a score=572723.000000
s hg38.chr12_GL383550v2_alt      1044 190 +    169178 AACTGTTTGAAGAAATGACTGAAGCTGAC-CTCTACTGGGAGCCATCTCAGTTCCCAACCTGCAGCATGCACAGCTGCCTCTCTCTCTCCTTCTGCCC------------------ACCTCGGCTTGCCTCCCCATCCCTAAGTCTCCCTGGTATTAattagtcatttcttgctgccctaacaaagtaccacagactggtggcttaaac
s panTro4.chr12              31237159 190 + 134246214 AACTGTTTGAAGAAATGACTGAAGCTGAC-CTCTACTGGGAGCCATCTCAGTTTCCAACCTGCAGCATGCACAGCTGCCTCGCTCTCTCCTTCTGCCC------------------ACCTCGGCTTGCCTCCCCATCCCTAAGTCTCCCTTGTATTAattagtcatttcttgctgccctaacaaagtaccacagactggtggcttaaac
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78438648 208 - 136387465 AACTGTTTGAAGAAATGAATGAAGCTGAC-CTCTACTGGGAGCCATCTCAGTTCCCAACCTGCAGCAAGCACAGCTGCCTCGCTCTCTCCTTCTGCCCACCTCTCTCCTTCTGCCTACCTCAGCTTGCCTCCCCATCCCTGAGTCTCCCTTGTATTAattagtcatttcttgctgccctaacaaagtaccacagactggtggcttacac
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54641076 190 + 123690457 AACTGTTTGAAGAAATGAATGAAGCTGAC-CTCTACTGGGAGCCATCTCAGTTCCCAACCTGCAGCATGCACAGCTGCCTCGCTCTCTCCTTCTGCCC------------------ACCTCGGCTTGCCTCCCCATCCCTGAATCTCCCTtgtattaattagtcatttcatgctgccctaacaatgtaccatggactggtggcttaaac
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79531817 190 - 134985053 aACTGTTTGAAGAAATGGATGAAGCTGAC-CTCTACTGAAAGCCATCTCGGTTCCCAGCCTGCAGCATGCACAGCTGCCTCGCCCTCTCCTTCTGCCC------------------ACCTCAGCTTGCCTCCCCATCCCTGAGTCTCCCTCGTATTAattagtcattttatgctgccctaacaaagtaccacagactggtggcttaaac
i rheMac3.chr11             I 480 C 0
s macFas5.chr11              80641228 190 - 137757926 aACTGTTTGAAGAAATGGATGAAGCTGAC-CTCTACTGAGAGCCATCTCGGTTCCCAGCCTGCAGCATGCACAGCTGCCTCGCCCTCTCCTTCTGCCC------------------ACCTCAGCTTGCCTCCCCATCCCTGAGTCTCCCTCGTATTAattagtcattttatgctgccctaacaaagtaccacagactggtggcttaaac
i macFas5.chr11             I 561 C 0
s papAnu2.chr11              78591106 190 - 132286798 AACTGTTTGAAGAAATGGATGAAGCTGAC-CTCTACTGAGAGCCATCTCGGTTCCCAGCCTGCAGCATGCACAGCTGCCTCGCTCTCTccttctgccc------------------acctcagcttgcCTCCCTGTCCCTGAGTCTCCCTCGTATTAATTAGTCATTTTATGCTGccctaacaaagtaccacagactggtggCTTAAAC
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74521611 190 - 128539186 AACTGTTTGAAGAAATGGATGAAGCTGAC-CTCTACTGAGAGCCATCTCGGTTCCCAGTCTGCAGCATGCACAGCTGCCTCGCTCTCTCCTTCTGCCC------------------ACCTCAGCTTGCCTCCCCATCCCTGAGTCTCCCTCATATTAattagtcattttatgctgccctaacaaagtaccacagactggtggcttaaac
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77284057 180 - 124281992 AAGTGTTTGAAGAAACAGATGAAGCTGAC-CTCTACCGGGAACCATCTCAGTTCCCAGCCTGCAGTGTGCACAGTTGCCTCACTC-------CTGCCC------------------ACCTCAGCTTGCCTTTCCATCCCTGAGTCTCCCTtgtattaattat---attcgcactaccctaaccaagtaccacagactggtggcttaaac
i calJac3.chr9              C 0 C 0
s mm10.chr10                126789223 150 + 130694993 -------------AAAAGACAAAGCTGGTGATCTCCAGAGAGACGGACCAGTTACTAG---------TGCTCAGCCTCCGAGGCACACCCTTGTGCTC------------------CCCTGCGCTAGCCGTCCAGACCTTTGGACCCACCCATG----------ATCTCAGGATGCTCTAACACACTG---------GGTGGCTTAAAT
i mm10.chr10                C 0 I 366
e canFam3.chr10              67243623 361 -  69331447 I

a score=1394566.000000
s hg38.chr12_GL383550v2_alt      1234 453 +    169178 caggggtccccccacccccagggccacaaaccggtaccagtccctgcatggcctgttaggaactgagtcacaca-------atgagctgcacgcaagtacgctaagcttcatctgtatttgcagccactccccactgcatgaattaccagctgagctctgccacctgtccgatcagcagcagcattagattctcataggagtgcaaaccctatggtaaattgtgcatgcaagggatctaggttgtgcattacttatgagaatctaatgcctgatgatctgtcactgtctctcatcatccccagataggaccatctagttgcaggaaaacaagctcagggctcccactgattctacattatggtgagctgtataattatttcattatgtattacaatgtaataataatagaaataaagtgcacagtaaatgtaatgtgcatgaatcatcccaaaaccatct
s panTro4.chr12              31237349 453 + 134246214 caggggtcccccaacccccagggccacaaaccggtaccagtccctgcatggcctgttaggaactgggtcacaca-------atgagctgcacgcaagtacgctaagcttcatctgtatttgcagccactccccactgcatgaattaccagctgagctctgccacctgtcagatcagcagcagcattagattctcataggagtgcaaaccctatggtaagttgtgcatgcaagggatctaggttgtgcattacttatgagaatctaatgcctgatgatctgtcactgtctctcatcatccccagataggaccatctagttgcaggaaaacaagctcagggctcccactgattctacattatggtgagctgtataattatttcattatgtattacaatgtaataataatagaaataaagtgcacagtaaatgtaatgtgcatgaatcatcccaaaaccatct
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78438856 459 - 136387465 caggggtcccccaacccccagggccacaaaccggtaccagtccctgcgtggcctgttaggaactgggtcacacagcaggagatgagctgcaggcaagtgggctaagcttcatctgtatttgcagccactccccactgcatgaattaccagctgagctccgccacctgtcagatcagcagcagcattagattctcataggagtgcaaaccctatggtaaa-agtgcatgcaagggatctaggttgtgcattacttatgagaatctaatgcctgatgatctgtcactgtctctcatcatccccagataggaccatctagttgcaggaaaacaagctcagggctcccactgattgtacattatggtgagatgtataagtatttcattatgtattacaatgtaataataatagaaataaagtgcacagtaaatgtaatgtgcatgaatcatcccaaaaccatct
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54641266 460 + 123690457 caggggtcccccaacccccagggccacaaacctgtaccagtccctgcacgacttgttaggaactgggtcatgcagcaggagatgagctgcaggcaagtaggctaagcttcatctgtatttgcagccactccccagtgcatgaattaccagctgagctccgccacctgtcagatcagcagcagcattagattctcacaggagtgcaagccctatggtaaactgtgcatgcaagggatctaggttgtgctttgcttatgagaatttaatgcctgatgatctgtcactgtctctcatcatccgcagataggaccatctagttgcaggaaaacaagctcagggctcccactgattctacactatggtgagctgtataattatttcattatgtattacaatgtaataataatagaaataaagtgcacagtaaatgtaatgtgcatgaatcatcccaaaaccatct
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79532007 460 - 134985053 caggggtcacccaatccctagggccacacaccggtaccagtccctgcatggcctgttaggaacagggccacacagcaggaggtgagctgcaggcaagtaggctaagcttcatctatatttgcagccactccccactgcttgaattaccagctgagctccgccacctgtcagaccaacagcagcattagattctcataggagtgtaaaccctatggtaaattgtgcatgcaagggatctaggttgtgcatttcttatgagaatctaatgcctgatgatctgtcactgtctctcatcacccccagatgggaccatctagttgcaagaaaacaagctcagggctcccactgattctacattatggtgagctgtataagtatttcattatgtattacaatgtaataataatagaaataaagtacccaataaatataatgtgcatgaatcatcccaaaaccatct
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80641418 460 - 137757926 caggggtcccccaatccctagggccacacaccggtaccagtccctgcatggcctgttaggaacagggccacacagcaggaggtgagctgcaggcaagtaggctaagcttcatctatatttgcagccactccccactgcttgaattaccagctgagctccgccacctgtcagaccaacagcagcattagattctcataggagtgtaaaccctatggtaaattgtgcatgcaagggatctaggttgtgcatttcttatgagaatctaatgcctgatgatctgtcactgtctctcatcacccccagatgggaccatctagttgcaagaaaacaagctcagggctcccactgattctacattatggtgagctgtataagtatttcattatgtattacaatgtaataataatagaaataaagtacccaataaatataatgtgcatgaatcatcccaaaaccatct
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78591296 460 - 132286798 CAGGGGTCCCCCAATCCCTAGGGCCACACACCGGTACCAGTCCCtgcatggcctgttaggaacagggccacacagcaggaggtgagctgcaGGCAAGTAGGctaagcttcatctgtatttgcaGCCACTCCCCACTGCTTGAATTACCAGCTGAGCTCCGCCACCTGTCAGaccagcagcagcattagattctcataggagtgtaaACCCTATGGTAAattgtgcatgcaagggatctaggttgtgcatttcttatgagaatctaatgcctgatgatctgtcactgtctctcatcacccccagatgggaccatctagttgcaagaaaacaagctcagggctcccactgattctacattatggtgagctgtataagtatttcattatgtattacaatgtaataataatagaaataaagtacccaataaatataatgtgcatgaatcatcccaaaaccatct
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74521801 460 - 128539186 caggggtcccccaatccccagggccacacaccggtaccagtccctgcatggcctgttaggaacagggccacacagcaggaggtgagctgcaggcaagtaagctaagcttcatctgtatttgcagccactccccactgcttgaattaccagctgagctccgccacctgtcagaccagcagcagcattagattctcataggagtgcaaaccctatggtaaattgtgcatgaaagggatctaggttgtgcatttcttatgagaatctaatgcctgatgatctgtcactgtctctcatcacccccagatgggaccatctagttgcaagaaaacaagctcagggctcccactgattctacattatggtgagctgtgtaagtatttcattatgtattacaatgtaataataatagaaataaagtacccaataaatatagtgtgcatgaatcatcccaaaaccatct
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77284237 457 - 124281992 caggggtcctctagcccccagggccacaaactgatgccagtctctgcatggcctgttaggaactgggccacacagcaggaagtaagtgtcagacaagcgggctaagcttcatctgtatttacagccactccccactgctttaattaccagctgagctctgccacctgccagatcagcagcagcattagattctcataggagtgcacatcctatggtgaattgtgcatgtgtgggatctaggttgtgtgttccttatgagaatctaatgcctgatgatctgtcgctgtctctcatca-cccaagatgggaccaactagttgcaggaaaacaagctcagggctcccactgattctacatt-tggtgagttgtataattatttcattacatattacaatgtaataataatagaaataaagtgca-aataactgcaatgttcacgaatcatcccaaaaccatct
i calJac3.chr9              C 0 C 0
e mm10.chr10                126789373 366 + 130694993 I
e canFam3.chr10              67243623 361 -  69331447 I

a score=354064.000000
s hg38.chr12_GL383550v2_alt      1687 121 +    169178 caccccctccacgagtccatggaaactctgtcttccacaaaactggtccctggtgtc-aaaaaagttggggactgctggcttaaacaacagaaatttattttctcacagttctggaggctaa
s panTro4.chr12              31237802 121 + 134246214 caccccctccacgagtccatggaaactctgtcttccacaaaactggtccctggtgtc-aaaaaagttggggactgctggcttaaataacagaaatttattttctcacagttctggaggctaa
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78439315 121 - 136387465 caccccctccccgagtccatggaaacattgtcttccacaaaactggtccctggtgtc-aaaaaagttggggactgttggcttgaacaacagaaatttattttctcacagttctggaggctaa
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54641726 121 + 123690457 caccccctccctaagtccatggaaacgttgtcttccacaaaactggtccctggtgtc-aaaaaagttggggactactggcttaaacaacagaaatttattttctcacagttctagaggctaa
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79532467 121 - 134985053 caccccctcccagagtccgtggaaatgctgtcttccacaaaactggtccctggtgtc-aaaaaagttggggactgctggcttaaacaacagacatttattttctcacagttctggaggctaa
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80641878 121 - 137757926 caccccctcccagagtccgtggaaatgctgtcttccacaaaactggtccctggtgtc-aaaaaagttggggactgctggcttaaacaacagacatttattttctcacagttctggaggctaa
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78591756 120 - 132286798 caCCCCCTCCCGGAGTCCGTGGAAATGCtctcttccacaaaactggtccctggtgtc--aaaaattTGGGGACtgctggcttaaacaacagacatttattttctcacagttctggaggctaa
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74522261 122 - 128539186 caccccctccccgagtccgtggaaatgctgtcttccacaaaactggtccctggtgtcaaaaaaagttggggactgctggcttaaacaacagacatttattttctcacagttctggaggctaa
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77284694  87 - 124281992 caccccctccctgagtccat----------------------------cctggtgtc-aaaaaagttgggaaccactggcttaaacaacagaaatttattttcttgca------gaggctga
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67243984  99 -  69331447 CACCCCCtgtactagtctg------ctctggctgccataa----------------c-aaaacatcattgaccaagtagattaaacaacagatatttattttctcccagctctggaggctgg
i canFam3.chr10             I 361 C 0
e mm10.chr10                126789373 366 + 130694993 I

a score=1427639.000000
s hg38.chr12_GL383550v2_alt      1808 404 +    169178 aagtccaagatcagccagccagcacgactgggttctggtgagggctctgtttctggcttgcagatgtctgccttcccacggtgccctcgcatggtg-agagagaactctgctatctcttccttttcttctaagagcacccgttctcccaggtca-ggctccagccttatgaccccatttaaccttcattactttcttcaaggccctctctccagtatagcccacatgaagggttagggctccaacatatgaatttagggatgggacaccatttagtttatggcaCCCCTGGCCCCGGCACATTGATGCTCTTATTCACCATGACGCAACATCTTTTCAA--ACAAAAAAGTTTTGAGGAAGCTGTGCTGGGAGAGTGGCTGGTGAGTAGCAGGGCTCCCCCAGTT-CAC
s panTro4.chr12              31237923 404 + 134246214 aagtccaagatcagccagccagcacgactgggttctggtgggggctctgtttctggcttgcagatgtctgccttcccacggtgccctcgcatggtg-agagagagctctgctatctcttccttttcttctaagagcacccgttctcccgggtca-ggctccagccttatgaccccatttaaccttcattactttcttcaaggccctctctccagtatagcccacatgaagggttagggctccaacatatgaatttagggatgggacaccatttagtttatggcaCCCCTGGCCCCGGCACATTGATGCTCTTATTCACCATGATGCAACATCTTTTCAA--ACAAAAAAGTTTTGAGGAAGCTGTGCTGGGAGAGTGGCTGGTGAGTAGCAGGGCTTCCCCAGTT-CAC
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78439436 404 - 136387465 aagtccaagatcagccagccagcacgactggattctggtgagggctctgtttctggcttgcagatgtctgccttcccacggtgccctcgcatggtg-agagagagctctggtatctcttccttttcttctgagagcacccgttctcccaggtca-ggctccaactttatgaccccatttaaccttcattactttcttcaaggccctatctccagtatagcccacatgaagggttagggctccaacatatgaatttagggatgggacaccatttagtttatggcaCCCCTGGCCCTGGCACATTGATGCTCTTATTCACCATGACACAACATCTTTTCAA--ACAAAAAAGTTTTGAAGAAGCTGTGCTGGGAGAGTGGCTGGTGAGTAGCAGGGCTCCCCCAGTT-CAC
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54641847 404 + 123690457 aagtccaagagcagccagccagcacgactgggttctggtgagggctctgtttctggcttgcagatgtctgccttcccatggtgccttcacatggtg-agagagagctctggtatctcttccttttcttctaagagcacccgttctcccgggtca-ggctccagccttatgaccgcatttaaccttcattactttcttcaagggcctatctccagtatagcccacgtgaagggttagggctccaacatatgaatttagggatgggacaccatttagtttatggcaCCCCTGGCCCTGGCACATTGATGCTCTTATTCACCATGACACAAAATCTTTTCAG--ACAAAAAAGTTTTGAGGAAGCTGTGCTGGGAGAGTGGCTGGTGAATAGCAGGGCTCCCCCAGTT-CAC
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79532588 400 - 134985053 aagcccaagatcagcctgccagcccgactgggttctggtgaggtctctgtttctggcttgcagatgtctgccttcccgtggtgcccttacatggtg-agagagagctctggtatctcttccttttcttctaagagcacccgttctcctggggca-ggctccagccttatgaccccatttaaccttcattacctcctttaaggccctatctccagtatagcccacatgaagggttagggctccaacatatgaatttagggatgggatac-----agtttaTAGCACGCCTGGCCCTGGCACACTGATGCTCTTATTCACCATGACACACCATCTTTTCATT-AAAAAAAAGTTTTGAGGAAGCTGTGCTGGGAGAGTGGCTGGTGAGTAGCAGGGCTCCCCCAGTT-CAC
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80641999 400 - 137757926 aagcccaagatcagcctgccagcccgactgggttctggtgaggtctctgtttctggcttgcagatgtctgccttcccgtggtgcccttacatggtg-agagagagctctggtatctctttcttttcttctaagagcacccgttctcctggggca-ggctccagccttatgaccccatttaaccttcattacctcctttaaggccctatctccagtatagcccacatgaagggttagggctccaacatatgaatttagggatgggatac-----agtttaTAGCACGCCTGGCCCTGGCACACTGATGCTCTTACTCACCATGACACACCATCTTTTCATT-AAAAAAAAGTTTTGAGGAAGCTGTGCTGGGAGAGTGGCTGGTGAGTAGCAGGGCTCCCCCAGTT-CAC
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78591876 400 - 132286798 aagccCAAGATCAGCCTGCCAGCCCGACTGGGTTCTGGTGAGGTCTCTGtttctggcttgcagatgtcTGCCTTCCCGTGGTGCCCTTACATGGTG-AGAGAGAGCTCTggtatctcttccttttcttctaagAGCACCCGTTCTCCTGGGGCA-GGCTCCAGCCTTATGACCCCATTTAACCTTCATTACCTCCTTTAAGGCCCTATCTCCAGTATAGCCCACATGAAGGGTTAGggctccaacatatgaatttagggatGGGATAC-----AGTTTATAGCACGCCTGGCCCTGGCACACTGATGCTCTTATTCACCATGACACACCatcttttcatg-aaaaaaaagttttgaggAAGCTGTGCTGGGAGAGTGGCTGGTGAGTAGCAGGGCTCCCCCAGTT-CAC
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74522383 401 - 128539186 aagcccaagatcagcctgccagcctgactgggttctggtgaggtctctgtttctggcttgcagatgtctgccttcccgcggtgcccttacatcgtg-agagagagctctggtatctcttccttttctcctaagagcacccattctcctggggca-ggctccagccttatgaccccatttaaccttcattacctcctttaaggccctatctccagtatagcccacatgaagggttagggctccaacatatgaatttagggttgggatac-----agtttaTAGCACGCCTGGCCCTGGCACACTGATGCTCTTATTCACCATGACACACCATCTTTTCATTAAAAAAAAAGTTTTGAGGAAGCTGTGCTGGGAGAGTGGCTGGTGAGTAGCAGGGCTCCCCCAGTT-CAC
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77284781 404 - 124281992 aagtcaaagatcagcctgccagcacaactgggttctagtgagggctctgtttctagcatgcagatgtctgccttcccactgtgccctcacatagtg-agagagagctctggtacctcttccttttcttctaagagcacccattctcccaggtcagggcttcagccttatgaccccatttaaccttcattacctccttcaagatcctatctccagtagagcccacatgaggggttagggctccaacgtatgaatttaggaatggggcacaatttagtttatggcaTCCCTGGTCCTGGTACATTGATGCTCTTATTCACCATGACACACCATCATTTCA---AAAAAAAAGTTTTGAGGAAGCTGTGCTGGGAGAGTGGCTGGTGAGTAGCAGGGCTCCCCCAGTT-CTC
i calJac3.chr9              C 0 C 0
s mm10.chr10                126789739 347 + 130694993 aagtccaagatcag---gccaccatgtctgggctctggcaagggctccctctttggcttacaggtggtagcctcctcacag-gcca---------g-agtaagagctctg-tgtctc---ctcttcttgcaag-gctccatctctgccaggtaagggctctattctcccatcttcaattagtcccgcttacctcgttgaagaccctgtctctaatacagactgcactggggaccaggactccagtgcatggactttagggccatgta------agcccataacaTTCTTGGTCCTATCACACGGAGGC---TACTCATC----------------------------------TGAGAAACATGTGCAGGAAGGCTAGAAGACAGACGATAGGACTTACCCAGTTAAAC
i mm10.chr10                I 366 C 0
s canFam3.chr10              67244083 384 -  69331447 aagtccaagaccagggtgccagcatggttgggctctaatgagagctctctgtttaggttgtagatggcggccttctcactgtgtcct-acatggtgaagagagggctctggtgtctcctcctcttcttacaagggtacc--------------a-gttcccaaccttataacttcattcaacctgaatcacctccttaaagacactatctccaattcaatc-acatggggtattagggtttcaacatat-aaccgggggtt----cccagttcaacgcgtaccaCCCCTGACCCTAGCATGCTGATGTGCTTATTTGCCATAACACGCTATCCTTTCTC--CAAAAAGAGAGTTGAGAAAGATGTGTGGGGACACTGACTGGTGTGTGGCAAGGCTCATCGAATT-TAC
i canFam3.chr10             C 0 I 197

a score=898104.000000
s hg38.chr12_GL383550v2_alt      2212 279 +    169178 AGGCTGTGTCCTTT-TTGCAATATGCCTCCTCATATCGCT---TTGTCAGGTGGGTCCTTTGCAGAGGCCAAGGCAGAAATTTCTCAGGGAGGTTGTAGGGGTTGAAAGA-----------GTAGGGAAAGGGCTGTTTCTCC--AGAAGTGTCTGTGGTTATCTGAGCAAAGAATGGCTCTG------------ATTAGGAAAGGTGGAGTAAACTG-----------AAAAGATGGACTCCTAAGgggctggccttaagaggggactgtcatctgcatcatgggatctga-------ggaacactgaaaat-gtctgttcaaaat
s panTro4.chr12              31238327 277 + 134246214 AGGCTGTGTCCTTT-TTGCAATATGCCTCCTAATATCGCT---TTGTCAGGTGGGTCCTTTGCAGAGGCCAAGGCAGAAATTTCTCAGGGAGGTTGTA--GGTTGATAGA-----------GTAGGGAAAGGGCTGTTTCTCC--AGAAGTGTCTGTGGTTATCTGAGCAAAGAATGGCTCTG------------ATTAGGAAAGGTGGAGTAAACTG-----------AAAAGATGGACTCCTAAGgggctggccttaagaggggactgtcatctgcatcatgggatctga-------ggaacactgaaaat-gtctgttcaaaat
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78439840 279 - 136387465 AGGCTGTGTCCTTT-ATGCAATGTGCCTCCTAATATTGCT---TTGTCAGGTGGGCCCTTTACAGAGGCCAAGGCAGAAATTTCTCAGGGAGGTTGTAAGGGTTGAAAGA-----------GTAGGGAAAGGGCTGTTTCTCC--AGAAGTGTCTGTAGTTACCTGAGCAAAGAATGGCTCTG------------ATTAGGAAAGGTGGAGTAAACTG-----------AAAAGATGGACTCCTAAGGGGCTGGCCTTAAGAGGGAACTATCATCTGCATCATGGGATCTGA-------GGAACACTGAAAAT-GTCTGTTCAAAAT
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54642251 279 + 123690457 AGGCAGTGTCCTTT-TTGCAACGTGCCTCCTAATATCGCT---TTGTCAGGTGGGCCCTTTGCAGAGGCCAAGGCAGAAATTTCTCAGGGAGGTTGTAGGGGTTGAAAGA-----------GTAGGGAGAGGGCTGTTTCGCC--AGAAATGTCTGTGGTTATCTGATCAAAGAATGGCTCTG------------ATTAGGAAAGGTGGAGTAAACTG-----------AAAAGATGGACTCCTAAGgggttggccttaagagaggactgtcatctgcatcgtgggatctga-------ggaacactgaaaat-ggctgttcaaaat
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79532988 286 - 134985053 AGGCTATGTCCTTT-TTGCAATGTGCCTCCTAATACCGCT---TTGTCAGGTGGACCTTTTGCAGAGGCCAAGGCAGAAATTTCTCAGGGACGTTGTGGGGGTTGAAAGA-----------GTAGGGAAAGCGTTGTTTTGCC--AGAAGTGTCTGTGATTTTCTGAGCAAAGGGTGGCTCTG------------ATTAGGAAAGGTGGGGTAAACTGAAAACATGGACAAAACATGGACTCCTAAGgggctggccttaagaggggactgtcacctgcatcatgggatccga-------ggaacactgaaaa-----tgttcaaaat
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80642399 286 - 137757926 AGGCTATGTCCTTT-TTGCAATGTGCCTCCTAATATCGCT---TTGTCAGGTGGACCTTTTGCAGAGGCCAAGGCAGAAATTTCTCAGGGACGTTGTGGGGGTTGAAAGA-----------GTAGGGAAAACGTTGTTTTGCC--AGAAGTGTCTGTGATTTTCTGAGCAAAGGGTGGCTCTG------------ATTAGGAAAGGTGGGGTAAACTGAAAACATGGACAAAACATGGACTCCTAAGgggctggccttaagaggggactgtcacctgcatcatgggatccga-------ggaacactgaaaa-----tgttcaaaat
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78592276 286 - 132286798 AGGCTATGTCCTTT-TTGCAATGTGCCTCCTAATATCGCT---TTGTCAGGTGGACCCTTtgcagaggccaaggcagaaattTCTCAGGGACGTTGTGGGGGTTGAAAGA-----------GTAGGGAAAGCGTTGTTTTGCC--AGAAGTGTCTGTGATTTTCTGAGCAAAGGGTGGCTCTG------------ATTAGGAAAGGTGGGGTAAACTGAAAACATGGACAAAACATGGACTCCTAAGGGGCTGGCCTTAAGAGGGGACTGTCACCTGCATCATGGGATCTGA-------GGAACactgaaaa-----tgttcaaaat
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74522784 286 - 128539186 AGGCTGTGTTCTTT-TTGCAATGTGCCTCCTAATATCGCT---TTGTCAGGTGGACCCTTTGCAGAGGCCAAGGCAGAAATTTCTCAGGGACGTTGTGGGGGTTGAAAGA-----------GTAGGGAAAGCGTTGTTTTGCC--AGAAGTGTCTGTGATTTTCTGAGCAAAGGGTGGCTCTG------------ATTAGGAAAGGTGGGGTAAACTGAAAACATGGACAAAACATGGACCCTTAAGgggctggccttaagaggggactgtcacctgcatcatgggatccga-------ggaacactgaaaa-----tgttcaaaat
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77285185 298 - 124281992 AGGCTGTATCATTT-TTGCAAGGTATCTCCTAATAGTGCT---TTGCCAGGTGGTCCCTTGGCAGAGGCCAAGGCAGAAATTTCTCAGGAAGGTTGTAGGGGATAAAAgaaagggaaagggaaagggaaagggTTGTTTCACC--AGAAGTGTCCATGGTCATCTGAGCAAAGAATGGCTCTG------------ATTAGGAAAGCTGGGGTAAACTG-----------AAAGGATGAACTAATAAGGGGCTGGCCTTAGGAGGGATCTGTTACCTGCATCATGGGATCCCATCATCATGATACACTGAAAATGGTCTGTTCAAAAC
i calJac3.chr9              C 0 C 0
s mm10.chr10                126790086 249 + 130694993 AAGCTATAGCCATT--TGCTGTCTAGCGTCTGACTTAGAT---TTGCCAGGT-GACCTCTTGCAGAAGTCAAGGAGGAAATTCCTGAGAAAG---CAAAGAGGTGAGAAA-----------GTAAAGGAGGGGGTGTTTCACC--ATCAGT-------ATTACCT----------TGGCTCTGACTGTACTGCAAACTGGGAGAGGGGAGGCCAGCTA-----------GAAGGATGGACTCC--------------------AGAAACCTCACTTGCAGTACCAGAACTGA-------GGAGCACTGAATGT-GTTTTTTAAAAAT
i mm10.chr10                C 0 I 635
s canFam3.chr10              67244664 262 -  69331447 AGGCTGTGTCATTTGTTGCGTTTTGGCCCCTGAAATAGCTAGCTTCTCCAGATGTCCTCTTGCAGAGACGAAGGCAGAAATTCCACAGGGAGGTGGTATGGGTTGATGGA-----------GTGTGGACAGAGTTGTTTAGCCAGAGAGGTGGCTATGGTCATCTGAGCAAAGAGTGGCTCTG------------ACT------------------TG-----------GAAGGCTGGACTc----agggccagcctgcagatag-actaccacatgcatcagaagaactga-------gaagcactggacac-gcccattaaaaat
i canFam3.chr10             I 197 C 0

a score=783364.000000
s hg38.chr12_GL383550v2_alt      2491 240 +    169178 gcctcactccttggcctgat-gctgacactaaaacttcaccactagaga----------------------tAAGGAAAAGAGGATCCATGT--AGTTGTCAGCTAATAGAAAATGGAGGGAGGAGAAAAAAACAttgcttgtca-ttttttcccagactataagagccaaagggaaagaagaagcattttgctcacttttgaactcccaccaaacttagtacggttgcctgcgtaaaagcgggtgctcag----tatatcttGAG-------TGAC-----------
s panTro4.chr12              31238604 241 + 134246214 acctcactccttggcctgat-gctgacactaaaacttcaccactagaga----------------------tAAGGAAAAGAGGATCCATGT--AGTTGTCAGCTAATAGAAAATGGAGGGAGGAGAAAAAAACAttgcttgtcatttttttcccagactataagagccaaagggaaagaagaagcattttgctcacttttgaactcccaccaaacttagtacggttgcctgcgtaaaagcgggtgctcag----tatatcttGAG-------TGAC-----------
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78440119 241 - 136387465 ACCTCACTCCTTGGCCTGAT-GCTGACACTAAGATTTCACCACTAGAGA----------------------TAAGGAAAAGAGGATCCATGT--AGTTGTCAGCTAATAGAAAATGGAAGGAGGAGAAAAAAACAttgttggtcatttttttcccagactataagagccaaagggaaagaagaagcattttgctcacttttgaactcccaccacacttagtacggttccctgcgtaaaagcgggtgctcag----tatatcttgag-------tgaC-----------
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54642530 246 + 123690457 acctcactccttggcctgat-gctgacactaaaatttcaccactagaga----------------------tAAGGAAAAGAGGATCCATGT--AGTTGTCAGCTAATAGAAAATGGACGGAGGAGAAAACAACATTGCTTGTCATTTTTTTCCCAGACTATAAGAGCCGCAGGGAAAGAAGCAGCATTTTGCTCACTTTTGAACTCCCACCACACTTAGTGCGGTTCCCTGAGTAAAAGCGGGTGCTCAG------TTCCCTGAGTAAAAGCTGAC-----------
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79533274 256 - 134985053 acctcactccttggcctggt-gctgacactaaaatttcaccactagagGGACAGTCCATCAG-------ATTAAGGAAAAGAGGATCCATGT--AGTTGTCAGCTAATAGAAAATGGAGGGAGGAGAACAAAACAttgcttgtcattttcttcctagactgtaaaagccgaagggaaagaagaagcattttgctcacttttgaactcccaccactcttagtacggttccctgagtaaaagcgggtgctcag----tatatcttGAG-------TTAC-----------
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80642685 256 - 137757926 acctcactccttggcctggt-gctgacactaaaatttcaccactagagGGACAGTCCATCAG-------ATTAAGGAAAAGAGGATCCATGT--AGTTGTCAGCTAATAGAAAATGGAGGGAGGAGAACAAAACATTGCTTGTCATTTTCTTCCTAGACTGTAAAAGCCGAAGGGAAAGAAGAAGCATTTTGCTCACTTTTGAACTCCCACCACACTTAGTACGGTTCCCTGAGTAAAAGCGGGTGCTCAG----TATATCTTGAG-------TGAC-----------
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78592562 256 - 132286798 acCTCACTCCTTGACCTGGT-GCTGACACTAAAATTTCACCACTAGAGGGACAGTCCATCAG-------ATTAAGGAAAAGAGGATCCATGT--AGTTGTCAGCTAATAGAAAATGGAGGGAGGAGAACAAAACATTGCTTGTCATTTTCTTCCTAGACTGTAAAAGCCGAAGGGAAAGAAGAAGCATTTTGCTCACTTTTGAACTCCCACCACACTTAGTACGGTTCCCTGAGTAAAAGCGGGTGCTCAG----TATATCTTGAG-------TGAC-----------
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74523070 256 - 128539186 acctcactccttggcctggt-gctgacactaaaatttcaccactagagagacagtccatcag-------atTAAGGAAAAGAGGATCCATGT--AGTTGTCAGCTAATAGAAAATGGAGGGAGGAGAACAAAACATTGCTTGTCATTTTCTTCCTAGACTGTAAAAGCCAAAGGGAAAGAAGAAGCATTTTGCTCACTTTTGAACTCCCACCACACTTAGTACGGTTCCCTGAGTAAAAGCGGGTGCTCAG----TATATCTTGAG-------TGAC-----------
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77285483 263 - 124281992 ACTTCACTCCTTGGCCTGTT-GCTGAGACTAAAATATCACCACTTGAGAGATAGTCCATCAATTTTTTTTTTTTTTTAAAGAGGATTCATGT--AGTTGTCAGCTAATAGAAAATGGAGGGAGGAGAAAAAAACATTTGTTGTCATTTTTTTCCTAGACTATAAAAGCCAAAGGGAAAGAAGAAGCATTTTGCTTCCTTTTGAACTCCTACCACACTTATTAGAGTTCCCTGCGTAAAAGCGGGTGCTCAG----TATGTCTTCAG-------TGAC-----------
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67244926 273 -  69331447 acctgcctcgttggcctgctggctgagactgaaactttatcatcagagatgtgttccagtga-------gtTAAGGAAAAGAGGGCCAATGTAGAGTCGTCAGCTAACAGAAAATGGGGGGAGAAGAAGACACCACTTCTTAACA-ATTTTTCctagattgtaaaagcctcaagtgaaagaattgtgttttggtcacttttgaatccccgctgcatctaccatggagatttgcacgaaagtgggtcctcagtaagtatgccttgaT-------CCACCGACTATTGCC
i canFam3.chr10             C 0 C 0
e mm10.chr10                126790335 635 + 130694993 I

a score=349131.000000
s hg38.chr12_GL383550v2_alt      2731 91 +    169178 CCCAGAGGATTTGGGTTCCTTTTGCATTCACATGCCAAGTGCTGAGTAAAACCTATTAACTTTAATGTTATTTATGTCACCAAATATATTT
s panTro4.chr12              31238845 91 + 134246214 CCCAGAGGATTTGGGTTCCTTTTGCATTCACATGCCAAGTGCTGAGTAAAACCTATTAACTTTACTGTTATTTATGTCACCAAATATATTT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78440360 91 - 136387465 CCCAGAGGATTTGGGTTCCTTTTGCATTCACATGCCAAGTACTGAGTAAAACCTATTAACTTTACTGTTATTTATGTCACCAAATGTATTT
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54642776 91 + 123690457 CCCAGAGGATTTGAGATCCTTTTGCATTCACGTGCCAAGTGCTGAGTAAAACCTATTAACTTTACTGTTATTTATGTCACCAAATATATTT
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79533530 91 - 134985053 CTCAGAGGATTTCGGTTCCTTTTGTATTCACATGCCAAGTGCTGAGTAAAACCTATTAACTTTACTGTTATTTATGTCACCAAATATATTT
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80642941 91 - 137757926 CTCAGAGGATTTCGGTTCCTTTTGTATTCACATGCCAAGTGCTGAGTAAAACCTATTAACTTTACTGTTATTTATGTCACCAAATATATTT
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78592818 91 - 132286798 CTCAGAGGATTTCGGTTCCTTTTGCATTCACATGCCAAGTGCTGAGTAAAACCTATTAACTTTACTGTTATTTATGTCACCAAAtatattt
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74523326 91 - 128539186 CTCAGAGGATTTCGGTTCCTTTTGCATTCACATGCCAAGTGCTGAGTAAAACCTATTAACTTTACTGTTATTTATGTCACCAAATATATTT
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77285746 91 - 124281992 CCCAAAGGATTTGAATTCCTTTTGCAGTCACATGCCAAGTGCTGAGTAGAATCTATTAACTTTACTGTTATTTATGTCACCAAATATATTT
i calJac3.chr9              C 0 C 0
s mm10.chr10                126790970 84 + 130694993 CCCGGAAGACATGGGTTCCATTCACATACACATG-------CTGAGCAAAACCTACTGTCTTTATTGCTTCTTACAGCACTAAATCTATAC
i mm10.chr10                I 635 I 23
s canFam3.chr10              67245199 87 -  69331447 CCAAGA----CTGGATTCCTTTCGCTTCCGCACACCAAGTGCTGAGCACAACCCATTATCCTTCCAGCCGTCTTTGACACCAAGTGCATTT
i canFam3.chr10             C 0 C 0

a score=89159.000000
s hg38.chr12_GL383550v2_alt      2822 25 +    169178 GTCCATTTCATTTTCGTCACCTGAG
s panTro4.chr12              31238936 25 + 134246214 GTCCATTTCATTTTCACCGCCTGAG
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78440451 25 - 136387465 GTCCATTTCATTTTCATCGCCTGAG
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54642867 25 + 123690457 GTCCATTTCATTTTCATCGCCTGAG
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79533621 25 - 134985053 GTCCATTTCATTTTCATCACTTGAG
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80643032 25 - 137757926 GTCCATTTCATTTTCATCACTTGAG
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78592909 25 - 132286798 gtccatttcattttcattgcttgAA
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74523417 25 - 128539186 GTCCATTTCATTTTCATCGCTTGAA
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77285837 25 - 124281992 GTCCATTTCATTTTCATTGCCTGAG
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67245286 25 -  69331447 TTCCATTTCAGTTTCACTGCCTGAG
i canFam3.chr10             C 0 C 0
e mm10.chr10                126791054 23 + 130694993 I

a score=3088322.000000
s hg38.chr12_GL383550v2_alt      2847  899 +    169178  
s panTro4.chr12              31238961  891 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78440476  898 - 136387465  
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54642892  897 + 123690457  
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79533646  899 - 134985053  
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80643057  899 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78592934  897 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74523442  899 - 128539186  
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77285862  893 - 124281992  
i calJac3.chr9              C 0 C 0
s mm10.chr10                126791077 1162 + 130694993  
i mm10.chr10                I 23 I 120
s canFam3.chr10              67245311  860 -  69331447  
i canFam3.chr10             C 0 C 0

a score=175045.000000
s hg38.chr12_GL383550v2_alt      3746  59 +    169178 atttcacc----cctgcactattgaatcaagatctttattttagcaaggttcctag----------------------------------------------------TAATAGG
s panTro4.chr12              31239852  59 + 134246214 attccacc----cctgcactattgaatcaagatctttattttagcaaggttcctag----------------------------------------------------TAATAGG
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78441374  59 - 136387465 attccacc----cctgcactattgaatcaagatctttgttttagcaaggttcccag----------------------------------------------------TAATAGG
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54643789  59 + 123690457 attccacc----cctgcagtattgaatcaaggtctttattttagcaaggttcccag----------------------------------------------------TAACAGG
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79534545  59 - 134985053 attccacc----cctgcgctattgaatcaagatctttattttatcaaagcttccag----------------------------------------------------TAATAGG
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80643956  59 - 137757926 attccacc----cctgcgctattgaatcaagatctttattttatcaaagctcccag----------------------------------------------------TAATAGG
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78593831  59 - 132286798 aTTCTACC----CCTGCGCTATTGAATCAAGATCTTTATTTTATCAAAGCTCCCAG----------------------------------------------------TAATAGG
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74524341  63 - 128539186 attccacccctgcctgcgctattgaatcaagatctttattttatcaaagctcccag----------------------------------------------------TAATAGG
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77286755  59 - 124281992 atcccacc----cctgcactgttgaatcaagacctttatttcagcaaggttcccag----------------------------------------------------TAATAGG
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67246171 111 -  69331447 cccccacc----ccaggcctattgattcagggtctgcattttaacaagatcttcggatgaAGACAGCGAAGAGGGGTTGGCAGGGGGAGAGAAAGAGAGAGGACAATACAACAGG
i canFam3.chr10             C 0 C 0
e mm10.chr10                126792239 120 + 130694993 I

a score=4153555.000000
s hg38.chr12_GL383550v2_alt      3805 1100 +    169178  
s panTro4.chr12              31239911 1101 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78441433 1105 - 136387465  
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54643848 1101 + 123690457  
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79534604 1173 - 134985053  
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80644015 1116 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78593890 1104 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74524404 1117 - 128539186  
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77286814 1096 - 124281992  
i calJac3.chr9              C 0 I 301
s mm10.chr10                126792359 1050 + 130694993  
i mm10.chr10                I 120 C 0
s canFam3.chr10              67246282 1096 -  69331447  
i canFam3.chr10             C 0 C 0

a score=679029.000000
s hg38.chr12_GL383550v2_alt      4905 197 +    169178 CCAC--------TCCCCTTTGT------TA---TTCAGACGCTAC--CACTCGGT--AGAGAGATTAGGACCTAAGAAAGGCTCTGTCT--TTGATGTCATTTTACAAATACATAAATATAAGGAAATAGAGGGAAGGAAAACTTCACGGAAAAAAATGTTTTAAAACAGTGCCCAGAACAGCATCTTTAGGTAGATGCCTtttcaaaccaggtggttct
s panTro4.chr12              31241012 197 + 134246214 CCAC--------TCCCCTTTGT------TA---TTCAGACGCTAC--CACTCGGT--AGAGAGATTAGGACCTAAGAAAGGCTCTGTCT--TTGATGTCATTTTACAAATACATAAATATAAGGAAATAGAGGGAAGGAAAACTTCACGGACAAAAATGTATTAAAACAGTGCCCAGAACAGCATCTTTAGGTAGATGCCTtttcaaaccaggtggttct
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78442538 188 - 136387465 CCACAGACGCTACCTCCTTTGT------TA---TTC---------------------AGAGAGATTAGGACCTAAGAGAGGCTCTGTCT--TTGATGTCATTTTACAAATACATAAATATAAGGAAATAGAGGGAAGGAAAACTTCAAGGAAAAAAATGTATTAAAACAGTGCCCAGAACAGCATCTTTAGGTAGATGCCTtttcaaaccaggtggttct
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54644949 197 + 123690457 CCAC--------TCCCCTTTGT------TA---TTCAGACGCTAC--CACTCGGT--AGAGAGATTAGGACCTAAGAGAGGCTCTGCCT--TTGATGTCATTTTACAAATACATAAATATAAGGAAATAGAGGGAAGGAAAACTTCAAGAAAAAAAATGTATTACAACAGTGCCCAGAACAGCATCTTTAGGTAGATGCCTtttcaaaccaggtggttct
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79535777 201 - 134985053 CCAC--------TCCCCTTTGTTAAGGATA---TTCAGATGCTAC--CACTTGGT--AGAGAAATTAAGACCTAAGAAAGGCTCCGTCT--TTGATGTCATTTTACAAATACATAAATACAAGGAAATAGAGGGAAGGAAAACTTCAAGG--AAAAATGTATTAAAACAGTGCCTAGAACAGCATCCTTAGGCAGATGCCTTTTCAAACCAGGTAGTTCT
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80645131 201 - 137757926 CCAC--------TCCCCTTTGTTAAGGATA---TTCAGATGCTAC--CACTTGGT--AGAGAAATTAAGACCTAAGAGAGGCTCCGTCT--TTGATGTCATTTTACAAATACATAAATACAAGGAAATAGAGGGAAGGAAAACTTCAAGG--AAAAATGTATTAAAACAGTGCCTAGAACAGCATCCTTAGGCAGATGCCTTTTCAAACCAGGTAGTTCT
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78594994 201 - 132286798 CCAC--------TCCCCTTTGTTAAGGATA---TTCAGATGCTAC--CACTTGGT--AGAGAAATTAGGACCTAAGAGAGGCTCCGTCT--TTGATGTCAttttacaaatacataaatacaaggAAATAGAGGGAAGGAAAACTTCaagg--aaaaatgtattaaaacagtGCCTAGAACAGCATCCTTAGGCAGATGCCTTTTCAAACCAGGTAGTTCT
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74525521 201 - 128539186 CCAC--------TCCCCTTTGTTAAGGATA---TTCAGATGCTAC--CACTTGGT--AGAGAAATTAGGACCTAAGAGAGGCTCTGTCT--TTGATGTCATTTTACAAATACATAAATACAAGGAAATAGAGGGAAGGAAAACTTCAAGG--AAAAATGTATTAAAACAGTGCCTAGAACAGCATCCTTAGGCAGATGCCTTTTCAAACCAGGTAGTTCT
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77288211 201 - 124281992 CTGC--------CCACCTTTGTTAAGGATA---TTGAGATGCAAC--CACTTGGT--AGAGCAATTAGGATCTAACAGAGGCTTTGTCC--TTCAGGTCATTTTAAAAATACATAAATATAAGGAAATAGAGGGAAGGAAAACTTCAAAG--AAAAATGTATCAAAACAGTGCCCAGAACAGCATTTTTAGGTAGATGCCTtttcaaaccaggtggttct
i calJac3.chr9              I 301 C 0
s mm10.chr10                126793409 177 + 130694993 CCAC--------TCCTCTTGGT------TAGATGTCAGAGTTTACATCAGATGG---AGAGTGATGGGGGCT-------GGTGCTATCT--CC-ATGTCCCTCTGTAAACACATAGATA-----AAATAGAGGGAAGAAAAACTTGAGGG----------ATAAAAACAGGAATGGAGAAGGCATCTTCACGTAGAT-CCTTCTTGAACCACGTGCATCC
i mm10.chr10                C 0 C 0
s canFam3.chr10              67247378 204 -  69331447 CAAT--------TCACCTTTGTTAAGAATA---TTCAGATGCAAC--CACAAGGTAAAGAGAGATTAGGACCTAACAGAGGCTCCCTCTCCTTGGTGTCACTTTATAAATGCATAAACATAAGGAAACAGAGAGAAAGAGAACTTCAAAG--AAATTTTATTTTAAAAGGTGCCCAGCACAGCATCTTCAGGTAGATG-CTTTTCATACAATATGGGTTT
i canFam3.chr10             C 0 I 2065

a score=1070542.000000
s hg38.chr12_GL383550v2_alt      5102 369 +    169178 ggtgagcgtttccaacatgtgccaagaggtgggcacttgatccagttggaccaatcataaagtctcacactttggtcactgtgattgggccaggaataaacacgtga-----ccccccctcaatccagccaatcaggattct--cctctg-tttttttcaaacttgagcttaggagagagtacctttcc-tctctagtcttggaac-tgtaaacgtgggaggctaga--gctgtagc---aaccatggctccagccacatgagaagccaatgtgcgcagacaagctgatgctcaaagaagccaagacaagcaggaagagaattcctcacaatgttcaagtccctggttccagttgtccctaatg-ttgacatcgcccctcccttc--
s panTro4.chr12              31241209 372 + 134246214 ggtgagcgtttccaacatgtgccaagaagtgggcacttgatccagttggaccaatcataaagtctcacactttggtcactgtgattgggccaggaataaacacgtga--cccccccccctcaatccagccaatcaggattct--cctctg-tttttttcaaacttgagcttaggagagagtacctttcc-tctctagtcttggaac-tgtaaacgtgggaggctaga--gctgtagc---aaccatggctccagccacatgagaagccaatgtgcgcagacaagctgatgctcaaagaagccaagacaagcaggaagagaattcctcacaatgttcaagtccctggttccagttgtccctaatg-ttgacatcgcccctcccttc--
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78442726 371 - 136387465 ggtgagcgtttccgacatgtgccaagaggtgggcacttgatccagttggaccaatcacaaagtctcacactttggtcactgtgattggcccaggaataaacacgtga----ccccccccccaatccagccaatcaggattat--cctctgttttttttcaaacttgagcttaggagagaggacctttcc-tttctagtcttggaac-tgtaaacgtgggaggctgga--gctgtagc---aaccatggctccagccacatgagaagccaatgtgcgcagacaagctgatgctcaaagaagccaagacaagcaggaagagaattcctcacaatgttcaagtccctggttccagttgtccctaatg-ttgacatcgcccctcccttc--
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54645146 375 + 123690457 ggtgagcgtttccaacatgtgccaagaggtgggcacttgatccagttggaccaatcataaagtctcacactttggtcactgtgattggcccaggaagaaacacgtgaccccccccccccccaatccagccagtcaggattct--cctctgttttttttcaaacttgagcttaggagagaacacctttcc-tctccagtcttggaac-tgtaaacgtgggaggctgga--gctgtagc---agccatggctccagccacatgagaagccacggtgcacagacaagctgatgctcaaagaagccaagacaagcaggaagagaattcctcacaatgttcaagtccctggttccagttgtccctaatg-tggacatcgcccctcccttc--
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79535978 359 - 134985053 GGTGAACGTTTCCAATATGTGCCAagaggtgggtacttgatccaattgagccaatcataaagtctcatgctttggtcactgtgattggcccaggaataaacatgtga---------ccccccatacagccaatcagaattct--cctctg-gtcttttcaaacttgagcttaggagagaggacatttcc-tctctagttttggaac-tgtaaatgtgggaggctgg--------agc---agctacggctccagccacctgagaagccaatgtgagcagataagctgatgctcagagaagccaagaccagcaggaacagaattcctcataatgttcaagtccctggttccagttgtccctaaTG-TTGACACCGCCCCTCCCTTC--
i rheMac3.chr11             C 0 I 1608
s macFas5.chr11              80645332 358 - 137757926 GGTGAACGTTTCCAATATGTGCCAagaggtgggtacttgatccaattgagccaatcataaagtctcatgctttggtcactgtgattggcccaggaataaacatgtga----------cccccatacagccaatcagaattct--cctctg-gtcttttcaaacttgagtttaggagagaggacatttcc-tctctagttttggaac-tgtaaatgtgggaggctgg--------agc---agctacggctccagccacctgagaagccaatgtgagcagataagctgatgctcagagaagccaagaccagcaggaacagaattcctcataatgttcaagtccctggttccagttgtccctaatg-ttgacaccgcccctcccttc--
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78595195 358 - 132286798 GGTGAACGTTTCCAATATGTGCCAAGAGGTGGGTACTTGATCCAATTGAGCCAATCATAAAATCTCATGCTTTGGTCACTGTGATTGGCCCAGGAATAAACATGTGA----------CCCCCATACAGCCAATCAGAATTCT--CCTCTG-GTCTTTTCAAACTCGAGCTTAGGAGAGAGGACGTTTCC-TCTCTAGTTTTGGAAC-TGTAAATGTGGGAGGCTGG--------AGC---AGCTACGGCTCCAGCCACCTGAGAAGCCAATGTGAGCAGATAAGCTGATGCTCAGAGAAGCCAAGACCAGCAGGAACAGAATTCCTCATAATGTTCAAGTCCCTGGTTCCAGTTGTCCCTAATG-TTGACACCGCCCCTCCCTTC--
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74525722 359 - 128539186 GGTGAACGTTTCCAATATGTGtcaagaggtgggtacttgatccaattgagccaatcataaagtctcatgctttggtcactgtgattggcccaggaataaacatgtga----------cccccatccaaccaatcaggattct--cctctg-gtcttttcaaacttgagcttaggagagaggacctttcc-tctccagtgttggaacatgtaaacgtgggaggctgg--------agc---aactatggctccagccaccttagaagccactatgagcagataagctgatgctcagagaagccaagaccagcaggaacagaattcctcataatgttcaagtccctggttccagttgtccctaatg-ttgacaccgcccctcccttc--
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77288412 361 - 124281992 gatgagtgttttcaacatgtgccaagaggtaggcacttgatccaatcaggccaatcataaagtctcacactttggtcactgtgattggtccaggaatagacatgtga----------ctccaatccagcccatcagaattat--cccctg-gt-ttttcaaacttgagcttaggagagaggacctttccttctctagtcttggaac-cgtaaatgtgtgaggctgga--gctatagc---aaccgtggctccagccacatgaaaagctaacatgagcagacaagctgatgctcagagaagccaagataagcaggaacagaa---ctcacaatgttcaagtccctggttccatttgtccctaatg-ttgactccacccctcccttc--
i calJac3.chr9              C 0 C 0
s mm10.chr10                126793586 335 + 130694993 TGTAGATG-TTCCAACA--AGCCGAGAGATGGGGACTTGATCCAAGCAGGTTAATCACAAGGGCTCATCCTTTGGCCTCCGTGACT--------------------A----------CTCCGTTCTGGCCAGTTGGAACTCCAGCCTGGG-TTTCTTTCCAAGTTAAACTGATGGAGAAGGA--TTTTC-TATTGGGGCACGGGGCACGGGGGCGGGGGGGATTGTGATGCCGAAGCTGGACCTCTGTGGCCAGGCACA--AGTGGCTAGCCTGGGCAAATAAGCCGATGCGCagacaagc-------agcatgcg------ttatcgcagtgtttgatttctcggttccaggtattcctgacgacagatctaaccccatccttttc
i mm10.chr10                C 0 C 0
e canFam3.chr10              67247582 2065 -  69331447 I

a score=181568.000000
s hg38.chr12_GL383550v2_alt      5471 76 +    169178 cagttccattaaccagtaaatcctcttttccgctttctctagttcagtttctttcacttgccacA--------G-------CTAGCAATTA
s panTro4.chr12              31241581 76 + 134246214 cagttccattaaccagtaaatcctcttttccgctttctctagttcagtttctttcacttgccacA--------G-------CTAGCAATTA
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78443097 84 - 136387465 cagttccattaaccagtaaatcctcttttccgctttctctagttcagtttctttcacttgccaccaggagagtg-------ctAGCAATTA
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54645521 82 + 123690457 cagttccattaaccagtaaatcctcttttcccctttctctagttcagtttctttcacttATT-CA--------GTTTCTTTCTAGCAATTA
i nomLeu3.chr11             C 0 C 0
s macFas5.chr11              80645690 84 - 137757926 tagttccattaaccagtaaatcctcttttccgcgttctctagttcagtttctttcacttgccaccaggagaCCG-------CTAGCAATTA
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78595553 84 - 132286798 TAGTTCCATTAACCAGTAAATCCTCTTTTCCGCGTTCTCTAGTTCAGTTTCTTTCACTTGCCACCAGGGGACCG-------CTAGCAATTA
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74526081 84 - 128539186 cagttccattaaccagtaaatcctcttttccgtgttctctagttcagtttctttcacttgccaccaggagaCCG-------CTAGCAATTA
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77288773 84 - 124281992 cagttctgttaaccagtaaatcctcttttctgctttccctagttcagtttctttcacttgccaccaggagagtg-------ctagcaaata
i calJac3.chr9              C 0 I 1451
s mm10.chr10                126793921 75 + 130694993 ctgaaatatt-accagtaagtcaaactctatgttgtctgtagttcaatttctttcgcttgccaccaagaacgcc-------ct--------
i mm10.chr10                C 0 C 0
e canFam3.chr10              67247582 2065 -  69331447 I
e rheMac3.chr11              79536337 1608 - 134985053 I

a score=96153.000000
s hg38.chr12_GL383550v2_alt      5547 52 +    169178 TTTCCAGTCAC-TCTCCTGCTGTGATAGCTGCCCTCAGCAAACCCCTCTTTTT
s panTro4.chr12              31241657 52 + 134246214 TTTCCAGTCAC-TCTCCTGCTGTGATAGCTGCCCTCAGCAAACCCCTCTTTTT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78443181 52 - 136387465 TTTCCAGTCAC-TCTCCTGCTGCGATAGCTGCCCTCAGCAAACCGCTCTTTTT
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54645603 52 + 123690457 TTTCCAGTCAC-TCTCCTGCTGCGATAGCTGCCCTCAGCAAACCCCTCTTTTT
i nomLeu3.chr11             C 0 C 0
s macFas5.chr11              80645774 52 - 137757926 TTTCCAGTCAC-TCTCTTGCTGCGATAGCTGCCCTCAGCAAACTCCTCTTTTT
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78595637 52 - 132286798 TTTCCAGTCAC-TCTCTTGCTGCGATAGCTGCCCTCAGCAaatccctcttttt
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74526165 51 - 128539186 TTTCCAGTCAC-TCTCTTGCTG-GATAGCTGCCCTCAGCAAACCCCTCTTTTT
i chlSab2.chr11             C 0 C 0
s mm10.chr10                126793996 47 + 130694993 ATTCCGTTCTCTTCTAGTGCTTCG-----TATCCTCGGAAACGCCCTTTGTT-
i mm10.chr10                C 0 C 0
e canFam3.chr10              67247582 2065 -  69331447 I
e calJac3.chr9               77288857 1451 - 124281992 I
e rheMac3.chr11              79536337 1608 - 134985053 I

a score=12724.000000
s hg38.chr12_GL383550v2_alt      5599 5 +    169178 AAAAT
s panTro4.chr12              31241709 5 + 134246214 AAAAT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78443233 5 - 136387465 AAAAT
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54645655 5 + 123690457 AAAAT
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79537945 5 - 134985053 AAAAA
i rheMac3.chr11             I 1608 C 0
s macFas5.chr11              80645826 5 - 137757926 AAAAT
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78595689 5 - 132286798 aaaat
i papAnu2.chr11             C 0 I 1595
s chlSab2.chr11              74526216 5 - 128539186 AAAAT
i chlSab2.chr11             C 0 I 1593
s mm10.chr10                126794043 4 + 130694993 -AAGT
i mm10.chr10                C 0 C 0
e canFam3.chr10              67247582 2065 -  69331447 I
e calJac3.chr9               77288857 1451 - 124281992 I

a score=45973.000000
s hg38.chr12_GL383550v2_alt      5604 15 +    169178 AGAAATGCCTCCTCA
s panTro4.chr12              31241714 15 + 134246214 AGAAATGCCTCCTCA
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78443238 15 - 136387465 AGAAATGCCTCCTCG
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54645660 15 + 123690457 AGAAACACCTCCTCA
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79537950 15 - 134985053 AGAAATGCCTCCTCA
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80645831 15 - 137757926 AGAAATGCCTCCTCA
i macFas5.chr11             C 0 I 1587
s papAnu2.chr11              78597289 15 - 132286798 agaaatgcctccTCA
i papAnu2.chr11             I 1595 C 0
s chlSab2.chr11              74527814 15 - 128539186 AGAAATGCCTCCTCA
i chlSab2.chr11             I 1593 C 0
s mm10.chr10                126794047 15 + 130694993 AGAAACGCCTCCTAA
i mm10.chr10                C 0 C 0
e canFam3.chr10              67247582 2065 -  69331447 I
e calJac3.chr9               77288857 1451 - 124281992 I

a score=462648.000000
s hg38.chr12_GL383550v2_alt      5619 170 +    169178 GAAGCCAGGAGAGTTGCTAGCGTAAACAGATCCAC-----ACCATGATGCAGTCAGAAGATCTGGACGGCTACAAAAGGCAGGA--------AAGGGGAAATAGAAACAACTGGCAAGCATTTTATGTCGGGATCAAATTGCCATTTTTACACAAATCTTTGTTATTAATGGAATATAGTATT
s panTro4.chr12              31241729 170 + 134246214 GAAGCCAGGAGAGTTGCTAGCGTAAACAGATCCAC-----ACCATGATGCAGTCAGAAGATCTGGACGGCTACAAAAGGCAGGA--------AAGGGGAAATAGAAACAACTGGCAAGCATTTTATGTTGGGATCAAATTGCCATTTTTACACAAATCTTTGTTATTAATGGAATATAGTATT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78443253 170 - 136387465 GAAGCGAGGAGAGATGCTAGAGTAAACAGATCCAC-----ACCATGATGCAGTCAGAAGATCTGGACGGCTACAAAAGGCAGGA--------AAGGGGAAATAGAAACAACTGGCAAGCATTTTATGTCAGGATCAAATTGCCATTTTTACACAAATCTTTGTTATTAATGGAATATAGTATT
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54645675 170 + 123690457 GAAGCAAGGAGAGTTGCTAGTGTAAACAGATCCAC-----ACCATGATGCAGTCAGAAGATCTGGACAGCTACAAAAGGCAGGA--------AAGGGGAAATAGAAACAACTGGCAAGCATTTTATGTCAGGATCAAATTGTCATTTTTACACAAATCTTTGTTATTAATGGAATATAGTATT
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79537965 170 - 134985053 GAAGCCAGAGGAGTTGCTAGAGTAAACAGATCCAC-----ACCATGATGCAGTCAGAAGATCTGGACAGCTACGAAGAGCAGGA--------AAGGGGAACTAGAAACAACTGGCAAATATTTTATGTCAGGATCAAATTGCCATTTTTACACAAATCTTTGTTATTAATGGAATATAGTATT
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80647433 170 - 137757926 GAAGCCAGAGGAGTTGCTAGAGTAAACAGATCCAC-----ACCATGATGCGGTCAGAAGATCTGGACAGCTACGAAGAGCAGGA--------AAGGGGAACTAGAAACAACTGGCAAATATTTTATGTCAGGATCAAATTGCCATTTTTACACAAATCTTTGTTATTAATGGAATATAGTATT
i macFas5.chr11             I 1587 C 0
s papAnu2.chr11              78597304 170 - 132286798 GAAGCCAGAGGAGTTGCTAGAGTAAACAGATCCAC-----ACCATGATGCAGTCAGAAGATCTGGACAGCTACAAAGAGCAGGA--------AAGGGGAACTAGAAACAACtggcaaatattttatgtcaGGATCAAATTGCCATTTTTACACAAATCTTTGTTATTAATGGAATATAGTATT
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74527829 170 - 128539186 GAAGCCAGAGGAGTTGCTAGAGTAAACAGATCCAC-----ACCATGATGCAGTCAGAAGATCTGGACAGCTACAAAGAGCAGGA--------AAGGGGAACCAGAAACAACTGGCAAATATTTTATGTCAGGATCAAATTGCCATTTTTACACAAATCTTTGTTATTAATGGAATATAGTATT
i chlSab2.chr11             C 0 C 0
s mm10.chr10                126794062 174 + 130694993 GAAACAGGCGAAGCTGACGGAATATAAAGGTCTATTACTAACCACAGTGCAA---------CTGGAGTGCTATGAAGGGCAAAAATGGAAAGAAGGAGGAGGAAAGACAACGGTGAAGTAGTTTATGCCAAGATCCAGTTGCCATTTTTACACAGACCTTTCTTACCACTGGAATAAAGCATT
i mm10.chr10                C 0 I 3782
e canFam3.chr10              67247582 2065 -  69331447 I
e calJac3.chr9               77288857 1451 - 124281992 I

a score=597684.000000
s hg38.chr12_GL383550v2_alt      5789 249 +    169178 CCTGGATTCTTCTCATTATAAGGATTGCACGCTCCACACTCACATCTGTGTGTGGAACAAGCCAGAGGGTGACCTACACTCACTATGGAAAGCGTTCAGTAGGCCCTTGCCAATGCAGAGGACGGCAGACTGAACTAGACCTCAAAGACTATGTGATCTggcccggcgtggtggctcacgcctgtaatcccagcactttgggaggccaaggcaggcggatcacgagatcaggagttcaagaccag-------------------------------------------cctg
s panTro4.chr12              31241899 249 + 134246214 CCTGGATTCTTCTCATTATAAGGATTGCACGCTCCACATTCACGTCTGTGTGTGGAAAAAACCAGAGGGTGACCTACACTCAATATGGAAAGCGTTCAGTAGGCCCTTGCCAATGCAGAGGACGGCAGACTGAACTAGACCTCAAAGACTATGTGATCTggcccggcgtggtggctcacgcctgtaatcccagcactttgggaggccaaggcaggcggatcacaagatcaggagttcaagaccag-------------------------------------------cctg
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78443423 249 - 136387465 CCTGGATTCTTCTCGTTATAAGGATTGCACGCTCCACACTCACATCTGTGTGTGGAACAAGCCAGAAGGTGACCTACACTCACTATGGAAAGCGTTCAGTAGGCCCTTGCCAGTGCAGAGGACGGCAGACTGAACTACACATCAAAGACTATGTGATCTggcccggcgtggtggctcacgcctgtaatcccagcactttgggaggccaaggcaggcggatcacgagatcaggagtccaagaccag-------------------------------------------cctg
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54645845 249 + 123690457 CCTGGATTCTTCTCGTTATAAGGATTGCACACTCCACACTCACATCTGTGTGTGGAACAAGCCAGAGTGTGACCCACACTCACTATGGAAAGCGTTCAGTAGGCCCTTGCCAATACAGAGGACAGCAGACTGAACTAGACATCAAAGACTATGTGATCTggcccagcgtggtggctcacgcctgtaatcccagcactttgggaggccaaggcaggcggatcacgagatcaagagttcaagaccag-------------------------------------------cctg
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79538135 291 - 134985053 CCTGGATTCTTCTCGCTATACGGATTGCACGCACCACACTCACATCTGTGTGTGGAACAAGCCAGAGGGTGACCTACACTCACTATAGAAAGTGTTCAGTAGGCCCTTGCCGATGCAGAAGACAGCAGACTGAACTAGACATCAAAGACTATGTGATCTggcccagcacggtggctcatgcctgtaatcccagcactttgggaggccaaggcaggcgga-cacgagatcaggagttctagaccagtttgaccaTGCAAACGCTACCCCAAGGCCTTTGGACATGCTATTCTG
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80647603 249 - 137757926 CCTGGATTCTTCTCGCTATAAGGATTGCACGCACCACACTCACATCTGTGTGTGGAACAAGCCAGAGGGTGACCTACACTCACTATAGAAAGTGTTCAGTAGGCCCTTGCCGATGCAGAAGACAGCAGACTGAACTAGACATCAAAGACTATGTGATCTggcccagcgcggtggctcatgcctgtaatcccagcactttgggaggccaaggcaggcggatcacgagatcaggagttctagaccag-------------------------------------------tctg
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78597474 249 - 132286798 CCTGGATTCTTCTCGCTATAAGGATTGCACGCACCACACTCACATCTGTGTGTGGAACAAGCCAGAGGGTGACCTACACTCACTATAGAAAGCGTTCAGTAGGCCCTTGCCAATGCAGAAGATGGCAGACTGAACTAGACATCAAAGACTATGTGATCTGGCCcagcgcggtagctcatgcctgtaatcccagcactttgggaggccaaggcaggcagatcacgagatcaggagttctagaccag-------------------------------------------cctg
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74527999 249 - 128539186 CCTGGATTCTTCTCGCTATAAGGATTGCACGCACCCCACTCATATCTGTGTGTGGAACAAGCCAGAGGGTGACCTACACTCACTATAGAAAGCGTTCAGTAGGCCCTTGCCAATGCAGAAGACGGCAGACTGAACTAGACATAAAAGACTATGTGATCTggcccagcgtggtggctcacgcttgtaatcccagcactttgggaggccaaggcaggcggatcacgagatcaggagttctagaccag-------------------------------------------cctg
i chlSab2.chr11             C 0 C 0
e mm10.chr10                126794236 3782 + 130694993 I
e canFam3.chr10              67247582 2065 -  69331447 I
e calJac3.chr9               77288857 1451 - 124281992 I

a score=1400132.000000
s hg38.chr12_GL383550v2_alt      6038 400 +    169178 accaTgcaaactgctaccccaaggcctttggatatgctatcccttctgactagaaggatctctgcttattgcctcccacccacaaattaa-tctcactcttcccgaagacttcaatcaatta----------ttatttttttcacagaggactttgttaatgcccatgactgcatcaattctcctgactatatacactcatttcaccatgcacctctcctctagaggatttagcatgtatcaca-attgtaattatat------------------------tttgtctgcttcccctggtgaattttaagcttgccattgtatcctcatcatctttcacagaacctgatatatagttcagtaaatatttgttggatagataaGCATATTTAGGTTAAGGGTAAAATGATAAAACAAAGAAACTCAACAATAATTC
s panTro4.chr12              31242148 400 + 134246214 accaTgcaaactgctaccccaaggcctttggatatgctatcccttctgactagaaggatctctgcttattgcctcccacccacaaattaa-tctcactcttcctgaagacttcaatcaatta----------ttatttttttcacagaggactttgttaatgcccacgactgcatcaattctcctgactatatacactcatttcaccatgcacctctcctctagaggatttagcatgtatcaca-attgtaattatat------------------------tttgtctgcttcccctggtgaattttaagcttgccattgtatcctcatcatctttcacagaacctgatatatagttcagtaaatatttgttggatagataaGCATATTTAGGTTAAGGGTAAAATGATAAAACAAAGAAACTCAACAATAATTC
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78443672 400 - 136387465 accGTgcaaactgttactccaaggcctttggatatgctatcctttctgactagaaggatctctgctgattgcctcccacccacaaattaa-tctcactcttcctgaagacttcaatcaatta----------ttatttttttcacagaggactttgttaatgcccatgactgcatcaattctgctgactatatacactcatttcaccatgcacctctcctctagaggatttagcgtggatcaca-attgtaattatat------------------------tttgtctgcttcccctggtgaattttaagcttgccattgtatcctcatcatctttcacagaacctaatatatagttcagtaaatatttgttggatagataaGCATATTTAGGTTAAGGGTAAAATGATAAAACAAAGAAACTCAACAATAATTC
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54646094 396 + 123690457 accaTgcaaactgctaccccaaggcctttggatatgctatcccttctgactagaaggatctctgctgattgcctccaacccacaaattaa-tctcactcttcctgaagacttcaaacaatta----------ttatttttttcacagaggactttgttaatgcccatgactgcatcaattctcctgactatatacactcatttcaccatgcacctcttctctagaggatttagcatgtatcaca-attgtaattatat------------------------tttgtctgcttcccctggtgaattttaagcttgccattgtatcctcatcatctttcacagaacctaatatatagttcagtaaatatttgttggatagataaGCATATTTAGGTTAAGGGTAAAATGATAAAAC----AAACTCAACAATAATTC
i nomLeu3.chr11             C 0 I 290
s rheMac3.chr11              79538426 397 - 134985053 Accatgcaaactgctaccccaaggcctttggacatgctatcccttctgcctagaaggatctctgcttattgcctcccacctacaaattaa-tctcactcttcctgaagacttcaatcaatta-------------tttttttcacagaggactttgttaatgcccatgactgcatcaattctcctgactatatacactcatttcaccatgcacctctcctctagaggatttaacatggatcaca-attgtaattatat------------------------tttgtctgcttcccctgatgaactttaagcttgccattgtatcctcatcatctttcacagaacctaatatatagttcagtaaatatttgttggatagataaGCATATTTAGGTTAAGGGTAAAACGATAAAACAAAGAAACTCAACAATAATTC
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80647852 397 - 137757926 accaTgcaaactgctaccccaaggcctttggacatgctatcccttctgcctagaaggatctctgcttattgcctcccacctacaaattaa-tctcactcttcctgaagacttcaatcaatta-------------tttttttcacagaggactttgttaatgcccatgactgcatcaattctcctgactatatacactcatttcaccatgcacctctcctctagaggatttaacatggatcaca-attgtaattatat------------------------tttgtctgcttcccctggtgaactttaagcttgccattgtatcctcatcatctttcacagaacctaatatatagttcagtaaatatttgttggatagataaGCATATTTAGGTTAAGGGTAAAACGATAAAACAAAGAAACTCAACAATAATTC
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78597723 396 - 132286798 accatgcAAACTGCTACCCCAAGGCCTTTGGACATGCTATCCCTTCTGCCTAGAAGGATCTCTGCTTATTGCCTTCCACCCACAAATTAA-TCTCACTCTTCCTGAAGACTTCaatcaatta--------------ttttttcacaGAGGACTTTGTTAATGCCCATGACTGCATCAATTCTCCTGACTATATACACTCATTTCACCATGCACCTCTCCTCTAGAGGATTTAACATGGATCACA-ATTGTAATTCTAT------------------------TTTGTCTGCTTCCCCTGGTGAACTTTAAGCTTGCCATTGTATcctcatcatttttcacagaacctAATATatagttcagtaaatatttgttggatagaTAAGCATATTTAGGTTAAGggtaaaatgataaaacaaagaaACTCAACAGTAATTC
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74528248 397 - 128539186 accaTgcaaactgctaccccaaggcctttggacatgctatcccttctgcctagaaggatctctgcttattgcctcccacccacaaattaa-tctcactcttcctgaagacttcaatcaatta-------------tttttttcacagaggactttgttaatgcccatgactgcatcaattctcctgactatatacactcatttcaccgtgcacctctcctctagaggatttaacatggatcaca-attgtaattatat------------------------tttgtctgcttcccctggtgaactttaagcttgccattgtatcctcatcatctttcacagaacctaatatatagttcagtaaatatttgttggatagataaGCATATTTAGGTTAAGGGTAAAATGATAAAACAAAGAAACTCAACAATAATTC
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77290308 394 - 124281992 accatgcaaactgctaccccggggcctttcgacatgctatcccttctgcccagaatgatctctgctgattgcctcctacccacaaattaa-tctcactcttcctgaacacttcaatt-atta-------------tttttttcacagaggactttgctcatgcccatgactgcatcgattcccctgaatatacactctcatttcaccatgcatctctcctctggaggatttagcatgtatcaca-attataattatat------------------------tttgtctgcttcccctggtgaattttaagcttgccattgtaacctcatcatctttcacagaacataatatatagttcagtaaatatttgttggatagatACGCAGATTTAGGTTTAGGGTAAAATGATAAAACAAAG--ACTCAACAATAATTC
i calJac3.chr9              I 1451 C 0
s canFam3.chr10              67249647 431 -  69331447 accatgcaaactgctaccccagggcctttgcacgtgcttccccagctgcctaaaatggtctctaccaattacctcccacctcaaaattaactcccactcttcctgaagtgtatatgtgtgtgtgtgtgtgtgtgtgtatgctcagagacgcctttgttaatcaccataactaggttatttcctctgactatatactctcacttcaccatgcgcctcccctctagagccctta---catatcacagattgctattatgttttgttgttgttgttatgttttcatttgtctacattccccagtgaattttaagctcaccattttat-ttaatcatctttcatggacgctgatatatagcttaataaatatttgttggatAGGCAAGTACA-ttagggcaagactatgccgctaaaacaaagaaactcaacaataattt
i canFam3.chr10             I 2065 C 0
e mm10.chr10                126794236 3782 + 130694993 I

a score=3393768.000000
s hg38.chr12_GL383550v2_alt      6438 972 +    169178  
s panTro4.chr12              31242548 972 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78444072 970 - 136387465  
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54646780 967 + 123690457  
i nomLeu3.chr11             I 290 C 0
s rheMac3.chr11              79538823 973 - 134985053  
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80648249 973 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78598119 973 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74528645 971 - 128539186  
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77290702 967 - 124281992  
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67250078 974 -  69331447  
i canFam3.chr10             C 0 I 181
e mm10.chr10                126794236 3782 + 130694993 I

a score=132082.000000
s hg38.chr12_GL383550v2_alt      7410 42 +    169178 --TCT---------------AGATGATCAAAAAT-CACTGAGTTGTTACCAAACCAG-AAA
s panTro4.chr12              31243520 42 + 134246214 --TCT---------------AGATGATCAAAAAA-AACTGAGTTGTTACCAAACCAG-AAA
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78445042 42 - 136387465 --TTT---------------AGATGATCAAAAAT-CACTGAGTTGTTACCAAACCAG-AAA
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54647747 42 + 123690457 --TTT---------------AGATGATCAAAAAT-CACTGAGTTGTTACCAAACCAG-AAA
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79539796 42 - 134985053 --TTT---------------AAATGATCAAAAAT-CACAGAGTTGTTATCAAACCAG-AAG
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80649222 42 - 137757926 --TTT---------------AAATGATCAAAAAT-CACAGAGTTGTTATCAAACCAG-AAA
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78599092 43 - 132286798 --ttt---------------agattaTCAAAAAT-CACGGAGTTGTTatcaaaccagaaaa
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74529616 42 - 128539186 --TTT---------------AGATGATCAAAAAT-CACGGAGTTGTTATCAAACCAG-AAA
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77291669 43 - 124281992 --TTT---------------AGATGATCAAAACTCCACGGAGTTGTTAACAAACCAG-AAA
i calJac3.chr9              C 0 I 987
s canFam3.chr10              67251233 59 -  69331447 tctttaaaaaaaaAAAAAAAAGATGGCCAAAACT-CACAGAGTTGTCAACAAACCAG-AAA
i canFam3.chr10             I 181 C 0
e mm10.chr10                126794236 3782 + 130694993 I

a score=744811.000000
s hg38.chr12_GL383550v2_alt      7452 255 +    169178 AAGTTGTTATATGCtgttccagttgctactgctgcatagcaaacaccct-aaaactcagtggtatagaacagccattttattatgctcacagattctgtgggtcaaaaatttgaacagagcacag-agggagggcttgtctttgacctctgatagctgtgtattcaaggaggaagactcaaagactgagggttactcaacagccgaggagtggaatcatctggc-------ctgctcacatgtctggtggttgatgctggtggt
s panTro4.chr12              31243562 255 + 134246214 AAGTTGTTATATGCtgttccagttgctactgctgcatagcaaacaccct-aaaactcagtggtatagaacagccattttattatgctcacagattctgtgggtcaaaaatttgaacagagcacag-agggagggcttgtctttgacctctgatagctgtgtattcaaggaggaagactcaaagactgagggttactcaacagccgaggagtggaatcatctggc-------ctgctcacatgtctggtggttgatgctggtggt
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78445084 255 - 136387465 AAGGTGTTACATGCtgttccagttgctactgctgcacagcaaacaccct-aaaactcagtggtatagaatagccattttattacgctcacagattctgtgggtcaaaaatttgaacagagcacag-agggagggcttgtctttgacctctgatagctgtgtattcacggaggaagactcaaagactgagggttactcgacagccgaggagtggaatcatctggc-------ctgctcacatgtctggtggttgatgctggtggt
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54647789 255 + 123690457 AAGGTGTTATATGCTCttccagttgctactgctgcatagcaaacaccct-aaaactcagtggtatagaacagccattttattatgctcacagattctgtgggtcaaaaatttgaacagagcacag-agggagggcttgtctttgacctctgatagctgtgtattcaaggaggaagactcaaagactgagggttactcaacagccgaggagtggaatcatctggc-------ctgctcacatgtctggtggttgatgctggtggt
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79539838 255 - 134985053 AAAGTGTTATATGCtgttccagttgctactgctgcatagcaaacaccct-aaaactcagtggtatagaacagccattttattatgcttacagattctgtgggtcaaaaatttgaacagagcacag-agggagggcttgtctttgccctctgagagctgtgtattcaaggaggaagcctcaaagactgagggttactcaacagctgaggagtggaatcatctggc-------gtgttcacatgtctgttggttgatgctggTGGT
i rheMac3.chr11             C 0 I 7
s macFas5.chr11              80649264 255 - 137757926 AAAGTGTTATAGGCtgttccagttgctactgctgcatagcaaacaccct-aaaactcagtggtatagaacagccattttattatgcttacagattctgtgggtcaaaaatttgaacagagcacag-agggagggcttgtctttgccctctgagagctgtgtattcaaggaggaagcctcaaagactgagggttactcaacagctgaggagtggaatcatctggc-------gtgttcacatgtctgttggttgatgctggTGGT
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78599135 255 - 132286798 aaagtGTTATATGCTGTTCCAGTTGCTACTGCTGCATAGCAAACACCCT-AAAACTCAATGGTATAGAACAGCCATTTTATTATGCTTACAGATTCTGTGGGTCAAAAATTTGAACAGAGCACAG-AGGGAGAGCTTGTCTTTGCCCTCTGAGAGCTGTGTATTCAAGGAGGAAGCCTCAAAGACTGAGGGTTACTCAATAGCTGAGGAGTGGAATCATCTGGC-------GTGTTCACATGTCTGTTGGTTGATGCTGGTGGT
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74529658 255 - 128539186 AAAGTGTTATATGCtgttccagttgctactgctgcatagcaaacaccct-aaaactcaatggtatagaacagccattttattatgcttacagattctgtgggtcaaaaatttgaacagagcacag-agggagggcttggctttgccctctgagagctgtgtattcaaggaggaagcctcaaagactgagggttactcaacagttgaggagtggaatcatctggc-------gtgttcacatgtctgttggttgatgctggTGGT
i chlSab2.chr11             C 0 I 8
s canFam3.chr10              67251292 262 -  69331447 -AGGGTATATATAGtgtcccatttactactactgcatagcaaacaccatcaaaacttagtagcataaaacagccatttgattatgttcacagattcaaagggtcaggaatttgaacagagcacagcagggagggcttgtctctgctctctcatagttgagtatttacccagaaggcatcaaaga-ggagagctactcaacagctgagaggtggaatcctctggcaggacttatactcacacatctgatgattgatgctactagt
i canFam3.chr10             C 0 C 0
e mm10.chr10                126794236 3782 + 130694993 I
e calJac3.chr9               77291712 987 - 124281992 I

a score=255164.000000
s hg38.chr12_GL383550v2_alt      7707 371 +    169178 cagctgggatctcagctaggctgttagctgaaatacctgtatatggcctttccatatggcctctgcatgtgagctagctgggctttcttatagcatggtggttagatgccaagaacaaatgtgccaacagagcaaagcagagctgcatggcattttcatgatctacctttggaagtcacagagagtcatttccaccacacgctattgatcagtgcaatca-caatatccacccacgttcaagaggaggg-acactggctccactattttataagtgaaatgtcacagtcacattataagagaacaaggggtaggagagacaattgtcatcatctttgg-------------aaaatacaatctgcaacaTATTGCCTCAGTTGCCT
s panTro4.chr12              31243817 371 + 134246214 cagctgggatctcagctaggctgttagctgaaatacctgtacatggcctttccatatggcctctgcatgtgagctagctgggctttcttatagcatggtggttagatgccaagaacaaatgtgccaacagagcaaagcagagctgcatggcattttcatggtctacctttggaagtcacagagagtcatttccaccacacgctattgatcagtgcaatca-caatatccacccacgttcaagaggaggg-acactggctccactattttataagtgaaatgtcacagtcacattataagagaacaaggggtaggagagacaattgtcatcatctttgg-------------aaaatacaatctgcaacaTATTGCCTCAGTTGCCT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78445339 366 - 136387465 cagctgggatctcagctaggctgttggctgaaatacctgtacatggccttttcatatggcctctgcatgtgagctagctgggctttcttatagcatggtggttagatgccaagaacaaatgtgccaacagagcaaagcagaggtgcatggcattttcatgatctacctttggaagtcac----agtcatttccaccacacgctattgataag-gcaatca-caacatccacccacgttcaagaggaggg-acacaggctccactattttataagtgaaatgtcacagtcacatcataagagaacaagaggtaagagagaccattgtcatcatctttgg-------------aaaacacaatctgcaacaTATTGCCTCAATTGCCT
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54648044 371 + 123690457 cagctgggatctcagctaggctgttggctgaaatacctgtacatggccttttcatatggcctctgcatgtgagctagctgggctttcttatagcgtggtggttagatgccaagaacaaatgtgccaacagagcaaagcagaagtgcatggcattttcatgatctacctttggaagtcacagagagtcatttccaccacacactactgatcagtgcaatca-caatatccacccacgttcaagaggaggg-acacaggctccactattttataagtgaaatgtcacagtcacattataagagaacaaggggtaggagagaccattgtcatcatctttgg-------------aaaatacaatctgcaacaTATTGCCTCAGTTGCCT
i nomLeu3.chr11             C 0 C 0
s canFam3.chr10              67251554 380 -  69331447 cagctggaatctcagttgggctactcgttggaacacctacacatgcca----cgagtggtatctccacatgggttcattgagcttccttacagcgtggtggctgcgtgccaagaacaaatgtcccaacagagtaaagcagaaatgcatggcatttttataatctggcttaggtagccccacagcattatttccaccatactctatgtgtcaaagcagtcaccaaggtcccccaggatgcaagaaaagggtacacagatcctaccacttaatgagaagaacatca-agtcataatgcaagagcatgtgccatgggagagatctctgcttccatctttggaaaaAAAAAAAAAAAAAAAAAACCTACAACATAATGCCT-AGTTGTCG
i canFam3.chr10             C 0 C 0
e mm10.chr10                126794236 3782 + 130694993 I
e calJac3.chr9               77291712 987 - 124281992 I
e chlSab2.chr11              74529913   8 - 128539186 I
e papAnu2.chr11              78599390   0 - 132286798 C
e macFas5.chr11              80649519   0 - 137757926 C
e rheMac3.chr11              79540093   7 - 134985053 I

a score=140393.000000
s hg38.chr12_GL383550v2_alt      8078 138 +    169178 CTGATGAAAAACAGATG-TTTTTTAACAAATAAGCCAATTAGCAATATTTTTGAAACAGTAAGGATT--TGAGTTTTGCTTTAATGACTTGAAAGGCAGAG-----TAGTTAATTCAGACAAAAAAATACTTTAT-TCTATTAAAAT
s panTro4.chr12              31244188 139 + 134246214 CTGATGAAAAACAGATGTTTTTTTAACAAATAAGCCAATTAGCAATATTTTTGAAACAGTAAGGATT--TGAGTTTTGCTTTAATGACTTGAAAGGCAGAG-----TAGTTAATTCAGACAAAAAAATACTTTAT-TCTATCAAAAT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78445705 138 - 136387465 CTGATGAAAAACAGATG-TTTTTTAACAAATAAGTCAATTAGCAATATTTTTGAAACAGTAAGGATT--TGAGTTTTGCTTTAATGACTTGAAAGGCAGAG-----TAGTTAATTCAGACaaaaaaatattttat-tctattaaaat
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54648415 138 + 123690457 CTGATGAAAAACAGATG-TTTTTGAACAAAAAAGCCAATTAGCAATATTTTTGAAACAGTAAGGATT--TGAGTTTTGCTTTAATGACTTGAAAGTCAGAG-----TAGTTAATTCAGACAAAAAAATATTTTAT-TCTACTATAAT
i nomLeu3.chr11             C 0 C 0
s calJac3.chr9               77292699 139 - 124281992 ctggccAAAAGCAGATG-TTTTTAAACAAATAAGCCCATTAGTAATATTTTTGAAACAGTAAGGATT--TGAGTTTTGCTTTAATGACTTGAAAAGCAGAG-----TAGTTAATTCAGGCAAAAAAAAATTGTATATCTATTAAAAC
i calJac3.chr9              I 987 I 130
s canFam3.chr10              67251934 139 -  69331447 CTGAGAAAAAGAA-----TTTTTAAAGAAATAAACCCATTAGCAACAACTTTGAGACAGTAAGGATTTCTACGTTTTACTATAATGATTGGAAAGGCAGAGTAATATAGTTAGTGCTGAC--AAAAATACATTAC-TTTATTACAAT
i canFam3.chr10             C 0 C 0
e mm10.chr10                126794236 3782 + 130694993 I
e chlSab2.chr11              74529913   8 - 128539186 I
e papAnu2.chr11              78599390   0 - 132286798 C
e macFas5.chr11              80649519   0 - 137757926 C
e rheMac3.chr11              79540093   7 - 134985053 I

a score=858604.000000
s hg38.chr12_GL383550v2_alt      8216 848 +    169178  
s panTro4.chr12              31244327 848 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78445843 848 - 136387465  
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54648553 848 + 123690457  
i nomLeu3.chr11             C 0 C 0
s calJac3.chr9               77292968 833 - 124281992  
i calJac3.chr9              I 130 C 0
s canFam3.chr10              67252073 827 -  69331447  
i canFam3.chr10             C 0 C 0
e mm10.chr10                126794236 3782 + 130694993 I
e chlSab2.chr11              74529913   8 - 128539186 I
e papAnu2.chr11              78599390   0 - 132286798 C
e macFas5.chr11              80649519   0 - 137757926 C
e rheMac3.chr11              79540093   7 - 134985053 I

a score=5639.000000
s hg38.chr12_GL383550v2_alt      9064 7 +    169178 ggacagg
s panTro4.chr12              31245175 7 + 134246214 GGACAGG
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78446691 7 - 136387465 AGACAGG
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54649401 7 + 123690457 gaacagg
i nomLeu3.chr11             C 0 C 0
s macFas5.chr11              80649519 7 - 137757926 GGAAAGC
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78599390 7 - 132286798 GGAAAGC
i papAnu2.chr11             C 0 C 0
s calJac3.chr9               77293801 7 - 124281992 GGACAGG
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67252900 2 -  69331447 GG-----
i canFam3.chr10             C 0 C 0
e mm10.chr10                126794236 3782 + 130694993 I
e chlSab2.chr11              74529913 8 - 128539186 I
e rheMac3.chr11              79540093 7 - 134985053 I

a score=1883.000000
s hg38.chr12_GL383550v2_alt      9071 1 +    169178 g
s panTro4.chr12              31245182 1 + 134246214 G
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78446698 1 - 136387465 G
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54649408 1 + 123690457 g
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79540100 1 - 134985053 G
i rheMac3.chr11             I 7 C 0
s macFas5.chr11              80649526 1 - 137757926 G
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78599397 1 - 132286798 A
i papAnu2.chr11             C 0 C 0
s calJac3.chr9               77293808 1 - 124281992 G
i calJac3.chr9              C 0 C 0
e mm10.chr10                126794236 3782 + 130694993 I
e canFam3.chr10              67252902 0 -  69331447 C
e chlSab2.chr11              74529913 8 - 128539186 I

a score=2059277.000000
s hg38.chr12_GL383550v2_alt      9072 627 +    169178  
s panTro4.chr12              31245183 627 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78446699 623 - 136387465  
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54649409 614 + 123690457  
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79540101 626 - 134985053  
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80649527 626 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78599398 621 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74529921 619 - 128539186  
i chlSab2.chr11             I 8 C 0
s calJac3.chr9               77293809 625 - 124281992  
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67252902 649 -  69331447  
i canFam3.chr10             C 0 C 0
e mm10.chr10                126794236 3782 + 130694993 I

a score=3419700.000000
s hg38.chr12_GL383550v2_alt      9699 800 +    169178  
s panTro4.chr12              31245810 800 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78447322 799 - 136387465  
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54650023 800 + 123690457  
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79540727 800 - 134985053  
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80650153 800 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78600019 800 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74530540 800 - 128539186  
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77294434 804 - 124281992  
i calJac3.chr9              C 0 C 0
s mm10.chr10                126798018 772 + 130694993  
i mm10.chr10                I 3782 C 0
s canFam3.chr10              67253551 774 -  69331447  
i canFam3.chr10             C 0 C 0

a score=6247.000000
s hg38.chr12_GL383550v2_alt     10499 2 +    169178 TA
s panTro4.chr12              31246610 2 + 134246214 TA
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78448121 2 - 136387465 TA
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54650823 2 + 123690457 TA
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79541527 2 - 134985053 TA
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80650953 2 - 137757926 TA
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78600819 2 - 132286798 TA
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74531340 2 - 128539186 TA
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77295238 2 - 124281992 CA
i calJac3.chr9              C 0 C 0
s mm10.chr10                126798790 2 + 130694993 CA
i mm10.chr10                C 0 I 7
e canFam3.chr10              67254325 0 -  69331447 C

a score=983953.000000
s hg38.chr12_GL383550v2_alt     10501 336 +    169178 Tagtcgtgccctgc-ataacaatgttttggtcagtgatagactgcacgtatgactgtggtcccctaagatcataccatgattttactgtaccatttctatgtttaaatatgtttagatatgcaaatatatcatgttataattgcctacagtattgagtacagtaatatgctgtacaggtttgtaacctaggaacaataggttatagcataggcgtgtagtaggc----tacaccatctaggtttctgtaagcacactc--tgatgttcacacaattacaaaatcacttattgaacacttttctcagaatgtatccttgtcgttaagcaacacatgactgTAGT
s panTro4.chr12              31246612 336 + 134246214 Tagtcgtgccctgc-ataacaatgttttggtcagtgatagactgcacgtatgactgtggtcccctaagatcataccatgtttttactgtaccatttctatgtttaaatatgtttagatatgcaaatatatcatgttataattgcctacagtattgagtacagtaatatgctgtacaggtttgtaacctaggaacaataggttatagcataggcgtgtagtaggc----tacaccatctaggtttctgtaagcacactc--tgatgttcacacaattacaaaatcacttattgaacacttttctcagaatgtatccttgtcattaagcaacacatgactgTAGT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78448123 338 - 136387465 Tagtcacgccctgc-ataacaatgttttggtcagtgatagactgcacatatgactgtggtcccctaagatcataacatgtttttactataccatttctatgtttaaatgtgtttagatacacaaatatatcatgttataattgcctacagtattgagtacagtaatatgctgtacaggtttgtagcctaggaacaataggttatagcataggtgtgtagtaggc----tacaccatctaggtttctgtaagcatactctttgatgttcacacaattacaaaatcacttattgaacacttttctcagagtgtatccttgtcgttaagcaacacatgactgTAGT
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54650825 336 + 123690457 Tagtcatgccctgc---aacaatgttttggtcagtaatagactgcacatatgactgtggtcccctaatatcataccatgttttcaccgtaccatttctatgtttaaatatgtttagttatgcaaatatatcatgttataattgcctacggtattgagtacagtaatatgctgtacaggtttgtagcctaggaataataggttatagcataatctattattaggc----tacaccatctaggtttctgtaagcacactctgtgatgttcacacaattacaaaatcgcttattgaacacttttctcagaatgtatccttgtcgttaagcaacacatgactgTAGT
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79541529 338 - 134985053 Tagtcatgctctgcaataacaacgttttggtcagtgatagactgcatatatgactgtggtcccctaagatcataccatgtttttactgtaccgtttctatgtttaaatatgtttagatacacaaatgcatcatgttataattgcctacagtattgagtacagtaatatactgtacaggtttgtagcctaggaacaataggtcatagcataggtgtgtagaaggc----tacaccatctaggtttctgtaagcacactctgtgatattcacacaatgacaaaatcacttattg-acatttttctcagaatgtatccctgtcattaagcaacacatgactgTAGT
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80650955 338 - 137757926 Tagtcatgctctgcaataacaacgttttggtcagtgatagactgcatatatgactgtggtcccctaagatcataccatgtttttactgtaccgtttctatgtttaaatatgtttagatacacaaatgcatcatgttataattgcctacagtattgagtacagtaatatgctgtacaggtttgtagcctaggaacaataggtcatagcataggtgtgtagaaggc----tacaccatctaggtttctgtaagcacactctgtgatattcacacaatgacaaaatcacttattg-acatttttctcagaatgtatccctgtcattaagcaacacatgactgTAGT
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78600821 337 - 132286798 TAGTCACACTCTGC-ATAACAACGTTTTGGTCAGTGATAGACTGCATATATGACGGTGGTCCCCTAAGATCATACCATGCTTTTACTGTACCAtttctatgtttacatatgtttagatacacaaatacatcatgttataattgcctacagtattgagtacagtaatatgctgtacaggtttgtagcctaggaacaataggtcATAGCATAGGTGTGTAgaaggc----tacaccatctaggtttctGTAAGCACACTCTGTGatattcacacaatgacaaaatcacttaTTG-ACatttttctcagaatgtatccctgtcattaagcaacacatgactgtagt
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74531342 341 - 128539186 Tagtcatgctctgc-ataacaacgttttggtcagtgatagactgcatatatgacggtggtcccctaagatcataccatgctttcactgtaccgtttctatgtttaaatatgtttagatacacaaatacatcatgttataattgcctacagtattgagtacagtaatatgctgtacaggtttgtagcctaggaacaataggtcatagcatggttgtgtggaaagctacatacaccatctaggtttctgtaagcacactctgtgatattcacacaatgacaaaatcacttattg-acatttttctcagaatgtatccctgtcattaagcaacacatgactgTAGT
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77295240 337 - 124281992 cagtcataccctgc-ctaataatgttttggtcaatgatagactgcatatataattacggtcccctaagatcatcccatgtttttactgtaccgtttctatgttttaatatgcttgggtacacaaatacatcacgttgtaattgcctacagtattgaatacagtaatataccatacaggtttgtagcctgggagcaactggttatatcataggtgtgtagtaggc----tgtgcgatctaagtctctgtaagcacactctgtgatgtacacacagtgacaaaatcacttgttg-acacttttctcagaatgtatccctgtcattaagcaacacatgactgTAGT
i calJac3.chr9              C 0 C 0
e mm10.chr10                126798792   7 + 130694993 I
e canFam3.chr10              67254325   0 -  69331447 C

a score=84765.000000
s hg38.chr12_GL383550v2_alt     10837 22 +    169178 TAGACAAAAGAGAGGGTTTTTC
s panTro4.chr12              31246948 22 + 134246214 TAGACAAAAGAGAGGGTTTTTC
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78448461 22 - 136387465 TAGACAAAAGAGAGGGTTTTTC
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54651161 22 + 123690457 TAGACAAGAGAGAGGGTTTTTC
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79541867 22 - 134985053 TAGACAAAAGAGAGGGTTTTTC
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80651293 22 - 137757926 TAGACAAAAGAGAGGGTTTTTC
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78601158 22 - 132286798 tAGACAAAAGAGAGGGTTTTTC
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74531683 22 - 128539186 TAGACAAAAGAGAGGGTTTTTC
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77295577 22 - 124281992 TAGCCAAAAGAGAGAGTTTTTC
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67254325 22 -  69331447 TAGGCAAAAGAAAGGGTTCTTT
i canFam3.chr10             C 0 I 3
e mm10.chr10                126798792  7 + 130694993 I

a score=1233001.000000
s hg38.chr12_GL383550v2_alt     10859 345 +    169178 AATTATTCAGTAATTTGATATAGTCAAGCAAATAATTCCAAGGAAT--GGGGGGGAAATGCCCCCTACTGCCTAAACTACTCTAATTGGCAACACTTAGAAGATCCATGGGTAAATCACTGGCCTTGTT-ACCTCTGTGTCACCAGCTTACCCCACCAACTAGCTCAGAACCCTAAGATTCTGCAAAGTATCTGCCCCACCCCAATCCCACCGCAAAACAAGTATCATATTTCCAAGAGTACCTGGC--TGG--CAGAGATTGCCTATCATATTTCATTCTCCTATTTCAAGATATA-------A----CCTG-GAGCAGCTGCCTAGCC-AGGGAAACCCATTGCCCACTCCATTTGCAGTTAG
s panTro4.chr12              31246970 345 + 134246214 AATTATTCAGTAATTTGATATAGTCAAGCAAATAATTCCAAGGAAT--GGGGGGGAAATGCCCCCTACTGACTAAACTACTCTAATTGGCAACACTTAGAAGATCCATGGGTAAATCACTGGCCTTGTT-ACCTCTGTGTCACCAGCTTACCCCACCAACTAGCTCAGAACCCTAAGATTCTGCAAAGTATCTGCCCCACCCCAATCCCACCGCAAAACAAGTATCATATTTCCAAGAGTACCTGGC--TGG--CAGAGATTGCCTATCATATTTCATTCTCCTATTTCAAGATATA-------A----CCTG-GAGCAGCTGCCTAGCC-AGGGAAACCcattgcccactccatttgcagttag
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78448483 344 - 136387465 AATTATTCAGTAATTTGATATAGTCAAGCAAATAATTCCAAGGAAT--GGGGGGGAAATGCCCCTT-CTGCCTAAGCTACTTTAATTGGCAACATTTAGAAGATCCATGGGTAAATCACTGGCCTTGTT-ACCTCTGTGTCAGCAGCTTACCCCACCAGCTAGCTCAGAACCCTAGGATTCTGCAAAGTATCTGCCCCACCCCAATCTCACCACAAAACAAGTATCATATTTCCAGGAGTACCTGGC--TGG--CAGAGATTGCCTATCATATTTCATTCTCCTATTTCAGAATATA-------A----CCTG-GAGCAGCTGCCAAGCC-AGGGAAACCCATTGACCACTCCATTTGCAGTTAG
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54651183 344 + 123690457 AATTATTCAGTAATTTGATATAGTCAAGCAAATAATTCCAAGGAAT--GGGGGGGAAATGCCCCTT-CTGCCTAAGCTACTCTAATTGGCAACACTTAGAATATCCATGGGTAAATCACTGGCCTTGTT-ACCTCTGTGTCACCGGCTTACCCCACCAGCTAGCTCAGAACCCTAGGATTCTGCAAAGTATCTGCCTCACCCCAATCCCACCGCAAAACAAGTATCATACTTCCAGGAGTACCTGGC--TGG--CAGAGATTGCCTATCATATTTCATTCTCCTATTTCAAGATATA-------A----CCTG-GAGCAGCTGCCAAGCC-AGGGAAACCcactgcccactccatttgcagttag
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79541889 346 - 134985053 AATTATTCAGTAATTTGATATAGTCAAGCAAATAATTCCAAGGAATCAGGGGGAAAAATGCCCCTT-CTGCCTAAGCTACTCTAATTGGCAACACTTAGAAGATCCATGGGTGAATCACTGGCCTTGTT-ACCTCTGTGTCACTGGCTTACCCCAACAGCTAGCTCAGAACTGTAGGGTTCTGCAAAGTATCTGCCCCACCCCAATCCCACCTCAAAACAAGTATCATATTTCCAGGAGTACCTGGC--TGG--CGGAGATTGCTGATCATGTTTCATTCTCCTATTTCCAGATATA-------A----CCTG-GAGCAACTGCCAAGCC-AGGGAAACCCATTGCCCACTCCATTTGCAGTTAG
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80651315 346 - 137757926 AATTATTCAGTAATTTGATATAGTCAAGCAAATAATTCCAAGGAATCAGGGGGAAAAATGCCCCTT-CTGCCTAAGCTACTCTAATTGGCAACACTTAGAAGATCCATGGGTGAATCACTGGCCTTGTT-ACCTCTGTGTCACTGGCTTACCCCAACAGCTAGCTCAGAACTGTAGGGTTCTGCAAAGTATCTGCCCCACCCCAATCCCACCTCAAAACAAGTATCATATTTCCAGGAGTACCTGGC--TGG--CGGAGATTGCTGATCATGTTTCATTCTCCTATTTCCAGATATA-------A----CCTG-GAGCAACTGCCAAGCC-AGGGAAACCCATTGCCCACTCCATTTGCAGTTAG
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78601180 346 - 132286798 AATTATTCAGTAATTTGATATAGTCAAGCAAATAATTCCAAGGAATCggggggggAAATGCCCCTT-CTGCCTAAGCTACTCTAATTGGCAACACTTAGAAGATCCATGGGTGAATCACTGGCCTTGTT-ACCTCTGTGTCCCTGGCTTACCCCAACAGCTAGCTCAGAACTGTAGGGTTCTGCAAAGTATCTGCTCCACCCCAATCCCACCTCAAAACAAGTATCATATTTCCAGGAGTACCTGGC--TAG--CAGAGATTGCTGATCATGTTTCATTCTCCTATTTCCAGATATA-------A----CCTG-GAGCAGCTGCCAAGCC-AGGGAAACCCATTGCCCACTCCATTTGCAGTTAG
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74531705 345 - 128539186 AATTATTCAGTAATTTGATATAGTCAAGCAAATAATTCCAAGGAGTC-GGGGGGAAAATGCCCCTT-CTGCCTAAGCTACTCTAATTGGCAACACTTAGAAGATCCATGGGTGAATCACTGGCCTTGTT-ACCTCTGTGTCACTGGCTTACCCCAACAGCTAGCTCAGAACTGTAGGGTTCTGCAAAGTATCTGCCCCACCCCAATCCCACCTCAAAACAAGTATCATATTTCCAGGAGTACCTGGC--TGG--CAGAGATTGCTGATCATGTTTCATTCTCCTATTTCCAGATATA-------A----CCTG-GAGCAGCTGCCAAGCC-AGGGAAACCCATTGCCCACTCCATTTGCAGTTAG
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77295599 345 - 124281992 AATTATTCAGTAATTTGATATAGTCGAGCAAATAATTCCAAGGAATGGGGAGGAAAAATGCCCCTT-CTGCCTAAGCTACTCTAATTGGCAACACTTAGAAGAACAATGGTTAAATCACTGCACTTGTT-ACCTCTGTGTCACTGGCTTACCCCACCAGCTGGCTCAGAACCCTAGGGCTCTGCAAAGTATCTGCCCCACCCCAATCCCACCACAAAACAAATATCATATTTCCAGGAGTACCTGGC--TTG--CAGAGACTACCTATCA-AAGTCATTCTCCTATTTCAAGATATA-------A----CCTG-GAGCATCTGCCCAGCC-AGGGAAACCcattgcccactcaatttgcagttag
i calJac3.chr9              C 0 C 0
s mm10.chr10                126798799 283 + 130694993 AATTACTCAGC-ATTTCAAAGAGTCAAACATATAATTTTGA-------GGAGAGAAAATG-------AT--------------------------------------TGTGTAAATTGTTGGCCTT---------------CCCATCTTACTCCATCAGGAAATTCAGAACTCCGACACTCTGCAAAGTTTCTGCCCCACCCCAACCTCACCCC-AAACAAGTA------TTTCAAAAGACAGTGGCTATGG--CAAAAATTTCCCAACAAAATCCATTCTTCTGCTTTAAGATCTAAAGACAGA----CCTGAGACCATCTGCTCACCC-AGACAGGTACAGTTCGCACTCCCTCTGAAGCAAG
i mm10.chr10                I 7 C 0
s canFam3.chr10              67254350 317 -  69331447 AATTATTCAGTAATTTTACATA----CGCAGATAATTCCAAGGAA---GGGAGAGAAATGCGATTT-TC----------------------ACATTTAGAAGATCAATG-GTAAATCATCGGACTCGTTAACCTATGTGTCATTGGCTTACCCCACCAGCCAGTTCAGAACTCCAGGGTTCTGCAAAGTATCTGCTCCACCCCAACCCCAATCC-AAACAAGT------TTTCTGGGGGAACGTGGA--TGGCACAGAGATTGCCCATCAAAATCCATTCTTCCATTTCATGATATA-------AAATTCTAA-CTGCAGCTGCCTCGCCAAGGAAAAACcatttccctctcctttggcagttag
i canFam3.chr10             I 3 I 361

a score=222494.000000
s hg38.chr12_GL383550v2_alt     11204 64 +    169178 G--TAGAAACATATAACTCCTTTCCACTGTGAAGTAGAAGGGGGGTAATTTGTGCCACTTCTAGAC
s panTro4.chr12              31247315 64 + 134246214 g--tagaaacatataactcctttccactgtgaagtagaaggggggtaatttgtgccacttctagac
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78448827 64 - 136387465 G--TAGAAACATATAACTCCTTTCCACTGTGAAGTAGAAGGGGGGTAATTTGTGCCACTTCTAGAC
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54651527 64 + 123690457 g--tagaaacatattactcctttccactgtgaactagaaggggggtaatttgtgccacttctagac
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79542235 63 - 134985053 G--TAGAAACATATAACTCCTTTCCACTGTGAAGTAGAA-GGGGGTAATTTGTGCCACTTCTAGAC
i rheMac3.chr11             C 0 I 9982
s macFas5.chr11              80651661 63 - 137757926 G--TAGAAACATATAACTCCTTTCCACTGTGAAGTAGAA-GAGGGTAATTTGTGCCACTTCTAGAC
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78601526 63 - 132286798 G--TAGAGACATATAACTCCTTTCCACTGTGAAGTAGAA-GGGGGTAATTTGTGCCACTTCTAGAC
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74532050 63 - 128539186 G--TAGAGACATATAACTCCTTTCCACTGTGAAGTAGAA-GGGGGTAATTTGTGCCACTTCTAGAC
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77295944 62 - 124281992 g--tagaaacatataactc--ttccactgtgaagtaggaggggggtaatttgtaccacttctagac
i calJac3.chr9              C 0 C 0
s mm10.chr10                126799082 57 + 130694993 GGAGAGAGACAAGTAACTCCTTGTCAT---------GAACGGGGGCAGGAATAGTCACTTTGGGAT
i mm10.chr10                C 0 C 0
s canFam3.chr10              67255028 60 -  69331447 g--tagagacgcataactcattctcactgtggaggcaca----agtgatgtgtgccacttccagac
i canFam3.chr10             I 361 C 0

a score=4316.000000
s hg38.chr12_GL383550v2_alt     11268 3 +    169178 TGA
s panTro4.chr12              31247379 3 + 134246214 tga
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78448891 3 - 136387465 TGA
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54651591 3 + 123690457 tga
i nomLeu3.chr11             C 0 C 0
s macFas5.chr11              80651724 1 - 137757926 --A
i macFas5.chr11             C 0 I 1
s papAnu2.chr11              78601589 1 - 132286798 --A
i papAnu2.chr11             C 0 I 1
s chlSab2.chr11              74532113 1 - 128539186 --A
i chlSab2.chr11             C 0 I 1
s calJac3.chr9               77296006 3 - 124281992 tga
i calJac3.chr9              C 0 C 0
s mm10.chr10                126799139 3 + 130694993 CAA
i mm10.chr10                C 0 C 0
s canFam3.chr10              67255088 3 -  69331447 caa
i canFam3.chr10             C 0 C 0
e rheMac3.chr11              79542298 9982 - 134985053 I

a score=28053.000000
s hg38.chr12_GL383550v2_alt     11271 8 +    169178 GGTTTTTA
s panTro4.chr12              31247382 8 + 134246214 ggttttta
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78448894 8 - 136387465 GGTTTTTA
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54651594 8 + 123690457 ggttttta
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79552280 8 - 134985053 GTTTTTTA
i rheMac3.chr11             I 9982 C 0
s macFas5.chr11              80651726 8 - 137757926 GTTTTTTA
i macFas5.chr11             I 1 C 0
s papAnu2.chr11              78601591 8 - 132286798 GTTTTTTA
i papAnu2.chr11             I 1 C 0
s chlSab2.chr11              74532115 8 - 128539186 GTTTTTTA
i chlSab2.chr11             I 1 C 0
s calJac3.chr9               77296009 8 - 124281992 ggttttta
i calJac3.chr9              C 0 C 0
s mm10.chr10                126799142 8 + 130694993 GGCTTTAA
i mm10.chr10                C 0 I 149
s canFam3.chr10              67255091 8 -  69331447 gtctatta
i canFam3.chr10             C 0 C 0

a score=2060632.000000
s hg38.chr12_GL383550v2_alt     11279 571 +    169178  
s panTro4.chr12              31247390 571 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78448902 582 - 136387465  
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54651602 589 + 123690457  
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79552288 582 - 134985053  
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80651734 582 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78601599 581 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74532123 582 - 128539186  
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77296017 587 - 124281992  
i calJac3.chr9              C 0 C 0
s mm10.chr10                126799299 451 + 130694993  
i mm10.chr10                I 149 I 915
s canFam3.chr10              67255099 590 -  69331447  
i canFam3.chr10             C 0 C 0

a score=504667.000000
s hg38.chr12_GL383550v2_alt     11850 156 +    169178 CCTCCAAGCTTTGTGGTGAATTAAACAAATGCATTA--ATCCATTTTGATGTTACACTCATTTGATTTCAAGcagctgaaag-----------------------------------aagagaaaacccagctcacagtggcttaagcaataaaag-catttactgatctcgtgatataagaattctgaagatg
s panTro4.chr12              31247961 155 + 134246214 CCTCCAAGCTTTGTGGTGAATTAAACAAATGCATTA--ATCCATTTTGATGTTATactcatttgatttcaagcagctgaaag-----------------------------------aagagaaaacccagctcacagtggtttaagcaataaaag-catttac-gatctcgtgatataagaattctgaagatg
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78449484 157 - 136387465 CCTCCAAGCTTTGTGGTGAATTAAACAAATGCATTA--ATCCATTTTGATGTTACACTCATTTGATTTCAAGcagctgaaag----------------------------------aaagagaaaacccagctcaccgtggcttaagcaataaaag-catttactgatctcgtgatataagaattctgaagatg
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54652191 191 + 123690457 CCTCCAAGCTTTGTGGTGAATTAAACAAATGCATTA--ATCCATTTTGATGTTATACTCATTTGATTTCAAGCAGCTGAAAGAAAGAGAAAACCCAGCTCACAGTGGCTTAAGCagaaagagaaaatccagctcgcagtggcttaagcaataaaag-catttactgatctcgtgatataagaattctgaagatg
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79552870 157 - 134985053 CCTCCAAGCTTCGTGGTGAATTAAACAAATGCATTA--ATTCATTTTGATGTTACGCTCATTTGATTTCAAGcagctgaaag----------------------------------aaagagaaaacccagctcacagtggcttaagcaataaaag-tatttactgatctcatgatataagaattctgaagatg
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80652316 157 - 137757926 CCTCCAAGCTTCGTGGTGAATTAAACAAATGCATTA--ATTCATTTTGATGTTACGCTCATTTGATTTCAAGcagctgaaag----------------------------------aaagagaaaacccagctcacagtggcttaagcaataaaag-tatttactgatctcatgatataagaattctgaagatg
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78602180 156 - 132286798 CCTCCAAGCTTCGTGGTGAATTAAAc-aatgaatta--attcattttgatGTTACACTCATTTGATTTCAAGCagctgaaag----------------------------------aaagagaaaacccagCTCACAGTGGCTTACGCAATAAAAG-CATTTACTGATCTCATGATACAAGAATTCTGAAGATG
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74532705 157 - 128539186 CCTCCAAGCTTCGTGGTGAATTAAACAAATGAATTA--ATTCATTTTGATGTTACACTCATTTGATTTCAAGcagctgaaag----------------------------------aaagagaaaacccagctcacagtggcttacacaataaaag-catttactgatctcatgatacaagaattctgaagatg
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77296604 153 - 124281992 CCTCCAAGTTTTGTGGTGAATTAAACCAATGCATCA--TTCCATTTTGATGTTACACTCATTTGATTCCAAGcagctgaaag--------------------------------------agacaacccagctcacagtgactcaagcaataaaag-catttactgatcttgtgttatataaagtctggagatg
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67255689 154 -  69331447 TCTCCAAGCTTTGTGGTGAAGCAGATGAGAGTATCCCTCTCTATTTTGGTAGTAAAGTAttttggcttcaagcaaatgaaag--------------------------------------agaaaaccaagttaatggtagcttaagcaataaaaatcatttact--tctcacttgacaagaagtctagaggtg
i canFam3.chr10             C 0 C 0
e mm10.chr10                126799750 915 + 130694993 I

a score=1785984.000000
s hg38.chr12_GL383550v2_alt     12006 523 +    169178  
s panTro4.chr12              31248116 523 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78449641 523 - 136387465  
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54652382 520 + 123690457  
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79553027 523 - 134985053  
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80652473 523 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78602336 523 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74532862 523 - 128539186  
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77296757 511 - 124281992  
i calJac3.chr9              C 0 C 0
s mm10.chr10                126800665 421 + 130694993  
i mm10.chr10                I 915 I 276
s canFam3.chr10              67255843 575 -  69331447  
i canFam3.chr10             C 0 C 0

a score=193915.000000
s hg38.chr12_GL383550v2_alt     12529 53 +    169178 agcccagatttgagtccatcggggactggccaggtataaggctaagtggtggg
s panTro4.chr12              31248639 53 + 134246214 AGCCCAGATTTTAGTCCATGGAGGACTGGCCAGGTATAAGGCTAAGTGGTGGG
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78450164 53 - 136387465 agcccagatttgagtccatgggggactggccaggtataaggctaagtggtggg
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54652902 53 + 123690457 agcccagatttgagtccatgggggactggccaggtataaggctaagtggtggg
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79553550 53 - 134985053 agcccagatttgagtccatgggggactggccaggtataaggctaagtggtggg
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80652996 53 - 137757926 agcccagatttgagtccatgggggactggccaggtataaggctaagtggtggg
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78602859 53 - 132286798 AGCCCAGATTTGAGTCCATGGGGGACTGGCCAGGTATAAGGCTAAGTGGTGGG
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74533385 53 - 128539186 agcccagatttgagtccatggggcactggccaggtataaggctaagtggtggg
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77297268 53 - 124281992 agcccagatttgagtccatgggggtctggccaggtaaaaggctaagtggtgga
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67256418 45 -  69331447 --------TTTATGACCGTGAGGGACTGGCTAGATACAAGACTAAGTGGCAgg
i canFam3.chr10             C 0 I 192
e mm10.chr10                126801086 276 + 130694993 I

a score=422572.000000
s hg38.chr12_GL383550v2_alt     12582 126 +    169178 catctgtcccctgtgtcatccacacatacac----------------------------tggctgtgactatggttttgataatggatgaagcttt-tcaagcctgtctccttctctctgaatgagtgctcatccagtacctgtagtgatcaaaa
s panTro4.chr12              31248692 126 + 134246214 CATCTGTCCCCTGTGTCATCCACACATACAC----------------------------TGGCTGTGCctatggttttgataatggatgaagcttt-tcaagcctgtctccttctctctgaatgagtgctcatccagtacctgtagtgatcaaaa
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78450217 126 - 136387465 catctgtcccatgtgtcatccacacatacac----------------------------tggctgtgactatggttttgataatggatgaagcttt-tcaagcttggctccttctctctgaatgagtgctcatccagtacctgtagtgatcaaaa
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54652955 126 + 123690457 catctgtcccctgtgtcatccacacatacac----------------------------tggctgtgactatggttttgataatggatgaagcttt-tcaagcctgtctccttctctctgaatgagtgctcatccagtacctgtagtgatcaaaa
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79553603 123 - 134985053 catctgtcccctgtgtcatccacacatacac----------------------------tggctgtgactatggttttaataatggatgaagcttt-tcaagcctgtctt---ctctctgaatgagtgctcatccagtacctgtagtgaccaaaa
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80653049 123 - 137757926 catctgtcccctgtgtcatccacacatacac----------------------------tggctgtgactatggttttaataatggatgaagcttt-tcaagcctgtctc---ctctctgaatgagtgctcatccagtacctgtagtgaccaaaa
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78602912 123 - 132286798 CATCTGTCCCCTGTGTCACCCACACATACAC----------------------------TGGCTGTGACTATGGTTTTGATAATGGATGAAGCTTT-TCAAGCCTGCCTC---CTCTCTGAATGAGTGCTCATCCAGTACCTATAGTGATCAAAA
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74533438 123 - 128539186 catctgtcccctgtgtcacccacacatacac----------------------------tggctgtgactatggttttgataatggatgaagcttt-tcaagcctgtctc---ctctctgaatgagtgctcatccagtacctatagtgatcaaaa
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77297321 126 - 124281992 catccgtcccctgtgtcacccacacacacat----------------------------tgactgtgactatagttttgataatggatgaagcttt-tcaaacctgtctccttctctctgaatgagtgcttatccagTACCTGTGGTGATCAAAa
i calJac3.chr9              C 0 I 1972
s canFam3.chr10              67256655 148 -  69331447 CATCTGCCCTCTATATcacttacacgcacacacacacacgcgcgcacacgcaGTTACTATGATTATGGTTATGGTTTTGATCATGGGTCAACCTTTATCAAGCCTGCCTCTGCCTCTTAATATAAGAGCTCATCTAG------TGGTATTCAAA-
i canFam3.chr10             I 192 C 0
e mm10.chr10                126801086 276 + 130694993 I

a score=119951.000000
s hg38.chr12_GL383550v2_alt     12708 33 +    169178 aaggcttcgttgcagcagtgctccaccagtttg
s panTro4.chr12              31248818 33 + 134246214 aaggcttcgttgcagcagtgctccaccagtttg
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78450343 33 - 136387465 aaggcttcattgcagcagtgcaccaccagtttg
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54653081 33 + 123690457 aaggcttcattgcagcagtgccccaccagtttg
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79553726 33 - 134985053 aaggcttcattgcagcagcatcccaccagtttg
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80653172 33 - 137757926 aaggcttcattgcagcagcatcccaccagtttg
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78603035 33 - 132286798 AAGGCTTCATTGCAGCAGCGTCCCACCAGTTTG
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74533561 33 - 128539186 aaggcttcattgcagcagcgtcccaccagtttg
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77299419 33 - 124281992 AAGGCTTCATTGCAGGAGTGCCCCACCAGTTTG
i calJac3.chr9              I 1972 C 0
s canFam3.chr10              67256803 32 -  69331447 AAGGCTTCCTTGCAGCAGTA-CCCACCAGTTTG
i canFam3.chr10             C 0 C 0
e mm10.chr10                126801086 276 + 130694993 I

a score=4263245.000000
s hg38.chr12_GL383550v2_alt     12741 1159 +    169178  
s panTro4.chr12              31248851 1159 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78450376 1146 - 136387465  
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54653114 1158 + 123690457  
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79553759 1126 - 134985053  
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80653205 1127 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78603068 1130 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74533594 1129 - 128539186  
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77299452 1151 - 124281992  
i calJac3.chr9              C 0 C 0
s mm10.chr10                126801362 1073 + 130694993  
i mm10.chr10                I 276 I 1408
s canFam3.chr10              67256835 1199 -  69331447  
i canFam3.chr10             C 0 C 0

a score=403774.000000
s hg38.chr12_GL383550v2_alt     13900 137 +    169178 TTTTGCCTCTTACT----TCTAT--------CCTGCACATTGGGGTGTGATTATCTGTGTATATTATATTATTCCTCCAGAGCAgggttggacaacgacagcaaggccaaatctaacctaccacttgtttttataccacccacaagaat
s panTro4.chr12              31250010 137 + 134246214 TTTTGCCTCTTACT----TCTAT--------CCTGCACATTGGGGTGTGATTATCTGTGTATATTATATTATTCCTCCAGAGCAgggttggacaacgacagcaaggccaaatctaacccaccacttgtttttataccacccacaagaat
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78451522 132 - 136387465 TTTTGCCTCTTACT----TCTAT--------CTTGCACATTGGGGTGTGATTATCTGTG-----TATATTATTCCTCTAGAGcaggggtggacaaccacagcagggccaaatctaacccaccacttgcttttataccacccacaagaat
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54654272 132 + 123690457 TTTAGCCTCCTACT----TCTAT--------CTTGCACATTGGGGTGTGATTATCTGTG-----TATATTATTCCTCTAGAGcaggggtggacaaccacagcagggccaaatctaacccaccacttgtttttataccacccacaagaat
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79554885 135 - 134985053 -TTTGCCTCTTACTTACCTCTGT--------CTTGTGGATTGGGGTGTGATTATCTGTG-----TATATTATTCCTCTAGAGcaggggtggacaaccacagcagggccaaattcaacccaccacttgtttttatatcactcacaagaat
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80654332 135 - 137757926 -TTTGCCTCTTACTTACCTCTGT--------CTTGTGGATTGGGGTGTGATTATCTGTG-----TATATTATTCCTCTAGAGcaggggtggacaaccacagcagggccaaattcaacccaccacttgtttttatatcactcacaagaat
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78604198 136 - 132286798 ttttGCCTCTTACTTACCTCTGT--------CTTGTGCATTGGGGTGTGATTATCTGTG-----TATATTATTCCTCTAGAGCAGGGGTGGACAACCACAGCAGGGCCAAATTCAACCCACCACTTGTTTTTATATCACTCACAAGAAT
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74534723 136 - 128539186 TTTTGCCTCTTACTTACCTCTGT--------CTTGTGCATTGGGGTGTGATTATCTGTG-----TATATTATTCCTCTAGAGcaggggtggacaaccacagcagggccaaattcaacccaccacttgtttttatatcactcacaagaat
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77300603 137 - 124281992 TTTGGCCTCTTACT----TCTATC---CCAGCTTGTGCATTGGGGTGTGATTATCTGTG-----TATATCATCCCTCTAGAGcaggggtggacaaccgcagcagggctgaatccaacccaccactcatttttgtaccatccagaagaat
i calJac3.chr9              C 0 I 275
s canFam3.chr10              67258034 116 -  69331447 TTTTATCTCACGTT----TCTGTCACTACAGCTTGCACATTGGAGTATCACCATCTGTT-----TATGTCCTTCCTTTAGATAGGGGGTAGGCAA------------------------GGCACCTGTCTCTGTTCCACCCTTAAGAAT
i canFam3.chr10             C 0 C 0
e mm10.chr10                126802435 1408 + 130694993 I

a score=366951.000000
s hg38.chr12_GL383550v2_alt     14037 117 +    169178 -gggttttacattttctaatggttaca-------------tttttaaatgttacataaatacctacataattcactcaatttt-------------gcctcacaaaat------ctgaaatatttactctctggcccctt------------aagagttttt
s panTro4.chr12              31250147 117 + 134246214 -gggttttacattttctaatggttACA-------------TTTTTAAAtgttacataaatacctacataattcactcaatttt-------------gcctcacaaaat------ctgaaatatttactctctggcccctt------------aagagttttt
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78451654 117 - 136387465 -gggttttacattttctaatggttACA-------------TTTTTAAAtgttacataaatacctacataattcactcaacttt-------------gcctcacaaaat------ctgaaatatttactttctggcccctt------------aaaagttttt
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54654404 117 + 123690457 -gggttttacattttctaatggttaca-------------tttttaaatgttacgtaaatacctacataattcactcaatttt-------------gcctcacaaaat------ctgaaatatttactctctggcccctt------------aagagttttt
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79555020 120 - 134985053 -gggttttacatttcctaatagttACA-------------TTTTTAAAtgttacataaatacttacgtaattcactcaatttt-------------gcctcacaaaat-------tgaaatatttactctctggtcccttaag--------aaagagttttt
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80654467 120 - 137757926 -gggttttacatttcctaatagttACA-------------TTTTTAAAtgttacataaatacttacgtaattcactcaatttt-------------gcctcacaaaat-------tgaaatatttactctctggtcccttaag--------aaagagttttt
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78604334 119 - 132286798 -GGGTTTTACATTTCCTAatggttaca-------------tttttaaatgttacataaataCTTACATAATTCACTCAATTTT-------------GCCTcacaaaat-------tgaaatatttactctctggtccCTTAAG---------AAGAGTTTTT
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74534859 120 - 128539186 -gggttttacatttcctaatggttACA-------------TTTTTAAAtgttacataaatacttacataattcactcaatttt-------------gcctcacaaaat-------tgaaatatttactctctggtcccttaag--------aaagagttttt
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77301015 120 - 124281992 -GGGTTTTACATTTTCTAATGGTTATA-------------TTTTCAAAtgctacat-aatacctacataattcactcaatttt-------------gcctcacaaaat------ctaaaatatttactctctggccccttatg--------aaaaagttttt
i calJac3.chr9              I 275 C 0
s canFam3.chr10              67258150 162 -  69331447 GATTTTTTGCTGTTTGTAACAGTTACATTTAACAGGGACGTTTTAAAAGgttatggaaatacctacatgatgctctcaattttacctgttggaatagtctcaaaaagtctaaatctgaagtgcttactcttcagtcctttTTTTTTTTTTTTAAGATTTTAT
i canFam3.chr10             C 0 I 324
e mm10.chr10                126802435 1408 + 130694993 I

a score=132054.000000
s hg38.chr12_GL383550v2_alt     14154 42 +    169178 cagcccctCATTAGATGAGACCTCCAGAAGCAGCTCTGTTCG
s panTro4.chr12              31250264 42 + 134246214 cagcccctCATTAGATGAGACCTCCAGAAGCAGCACTGTTCG
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78451771 42 - 136387465 cagcccctCATTAGATGAGACCTCCAGAAGCAGCACTGTTCG
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54654521 42 + 123690457 cagcccctCATTAGATGAGACCTCCAGAAGCAGCACTGTTCG
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79555140 41 - 134985053 cag-cccTCATTAGATGAGACCTCCAGAAGCAGCACTGTTCA
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80654587 41 - 137757926 cag-cccTCATTAGATGAGACCTCCAGAAGCAGCACTGTTCA
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78604453 42 - 132286798 CAGCCCCTCATTAGATGAGACCTCCAGAAGCAGCACTGTTCA
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74534979 42 - 128539186 cagcccctCATTAGATGAGACCTCCAGAAGCAGCACTGTTCA
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77301135 42 - 124281992 tagcccctCATTAGATGAGACCTCCAGAAGCAGCACTGTTCA
i calJac3.chr9              C 0 C 0
e mm10.chr10                126802435 1408 + 130694993 I
e canFam3.chr10              67258312 324 -  69331447 I

a score=1943773.000000
s hg38.chr12_GL383550v2_alt     14196 634 +    169178  
s panTro4.chr12              31250306 637 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78451813 634 - 136387465  
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54654563 636 + 123690457  
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79555181 595 - 134985053  
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80654628 595 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78604495 592 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74535021 592 - 128539186  
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77301177 575 - 124281992  
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67258636 523 -  69331447  
i canFam3.chr10             I 324 C 0
e mm10.chr10                126802435 1408 + 130694993 I

a score=4114715.000000
s hg38.chr12_GL383550v2_alt     14830 1035 +    169178  
s panTro4.chr12              31250943 1033 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78452447 1028 - 136387465  
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54655199 1035 + 123690457  
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79555776 1022 - 134985053  
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80655223 1030 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78605087 1037 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74535613 1031 - 128539186  
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77301752 1021 - 124281992  
i calJac3.chr9              C 0 C 0
s mm10.chr10                126803843 1021 + 130694993  
i mm10.chr10                I 1408 I 428
s canFam3.chr10              67259159 1049 -  69331447  
i canFam3.chr10             C 0 C 0

a score=85113.000000
s hg38.chr12_GL383550v2_alt     15865 29 +    169178 aaaaaaaaaaGACAGTATTAAACAAGTGA
s panTro4.chr12              31251976 29 + 134246214 AAAAAAAAAAGACAGTATTAAACAAGTGA
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78453475 25 - 136387465 AAAAAAAAACCACAGTATT----AATTGA
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54656234 29 + 123690457 aaaaaaaaaaGACGGTATTAAACAAGTGC
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79556798 29 - 134985053 AAAAAAAAAAGACAGTATTAAACAAGTGA
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80656253 29 - 137757926 AAAAAAAAAAGACAGTATTAAACAAGTGA
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78606124 29 - 132286798 aaaaaaaaaagacagtattaAACAAGTGA
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74536644 29 - 128539186 aaaaaaaaaaGACAGTATTAAACAAGTGA
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77302773 25 - 124281992 --AAAAAAAAGGCAATATTAAACA--TGA
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67260208 24 -  69331447 -----AAAATGACAATATTAAACAAGCGA
i canFam3.chr10             C 0 I 1
e mm10.chr10                126804864 428 + 130694993 I

a score=126188.000000
s hg38.chr12_GL383550v2_alt     15894 28 +    169178 TTTTTCTGAG---TTGATTTAAACTTGGCTA
s panTro4.chr12              31252005 28 + 134246214 TTTTTCTGAG---TTGATTTAAACTTGGCTA
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78453500 28 - 136387465 TTTTTCAGAG---TTGATTTAAACTTGGCTA
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54656263 28 + 123690457 TTTTTCAGAG---TTGATTTAAACTTGGCTA
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79556827 28 - 134985053 TTTTTCAGAG---TTGATTTAAACTTGGCTA
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80656282 28 - 137757926 TTTTTCAGAG---TTGATTTAAACTTGGCTA
i macFas5.chr11             C 0 I 257
s papAnu2.chr11              78606153 28 - 132286798 TTTTTCAGAG---TTGATTTAAACTTggcta
i papAnu2.chr11             C 0 I 264
s chlSab2.chr11              74536673 28 - 128539186 TTTTTCAGAG---TTGATTTAAACTTGGCTA
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77302798 28 - 124281992 TTTTTCAGAG---TTGATTTAAATGTGGCTA
i calJac3.chr9              C 0 C 0
s mm10.chr10                126805292 28 + 130694993 TTCTTCAGTG---TTGATTCAAACTTGGCTG
i mm10.chr10                I 428 C 0
s canFam3.chr10              67260233 31 -  69331447 TTTTTCAGAGTGATTGATTTAAACTTGGCTA
i canFam3.chr10             I 1 C 0

a score=21004.000000
s hg38.chr12_GL383550v2_alt     15922 8 +    169178 AGGATTTT
s panTro4.chr12              31252033 8 + 134246214 AGGATTTT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78453528 8 - 136387465 AGGATTTT
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54656291 8 + 123690457 AGGATTTT
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79556855 8 - 134985053 AGGATTTT
i rheMac3.chr11             C 0 I 112
s macFas5.chr11              80656567 8 - 137757926 AGGATTTT
i macFas5.chr11             I 257 I 2
s papAnu2.chr11              78606445 8 - 132286798 aggatttt
i papAnu2.chr11             I 264 I 2
s chlSab2.chr11              74536701 8 - 128539186 AGGATTTT
i chlSab2.chr11             C 0 I 267
s calJac3.chr9               77302826 8 - 124281992 AGGATTTT
i calJac3.chr9              C 0 C 0
s mm10.chr10                126805320 4 + 130694993 AGGA----
i mm10.chr10                C 0 C 0
s canFam3.chr10              67260264 3 -  69331447 AGT-----
i canFam3.chr10             C 0 C 0

a score=1910.000000
s hg38.chr12_GL383550v2_alt     15930 2 +    169178 AG
s panTro4.chr12              31252041 2 + 134246214 AG
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78453536 2 - 136387465 AG
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54656299 2 + 123690457 AG
i nomLeu3.chr11             C 0 C 0
s calJac3.chr9               77302834 2 - 124281992 AG
i calJac3.chr9              C 0 C 0
e mm10.chr10                126805324 0 + 130694993 C
e canFam3.chr10              67260267 0 -  69331447 C
e chlSab2.chr11              74536709 267 - 128539186 I
e papAnu2.chr11              78606453 2 - 132286798 I
e macFas5.chr11              80656575 2 - 137757926 I
e rheMac3.chr11              79556863 112 - 134985053 I

a score=5584.000000
s hg38.chr12_GL383550v2_alt     15932 2 +    169178 AA
s panTro4.chr12              31252043 2 + 134246214 AA
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78453538 2 - 136387465 AA
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54656301 2 + 123690457 AA
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79556975 2 - 134985053 AA
i rheMac3.chr11             I 112 C 0
s macFas5.chr11              80656577 2 - 137757926 AA
i macFas5.chr11             I 2 C 0
s papAnu2.chr11              78606455 2 - 132286798 aa
i papAnu2.chr11             I 2 C 0
s calJac3.chr9               77302836 2 - 124281992 AA
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67260267 1 -  69331447 -A
i canFam3.chr10             C 0 C 0
e mm10.chr10                126805324 0 + 130694993 C
e chlSab2.chr11              74536709 267 - 128539186 I

a score=428297.000000
s hg38.chr12_GL383550v2_alt     15934 127 +    169178 AGTCTTGTCATTTCACAAGTGAATGTCACACACAAAGAGTAGAGGGAACAAAGTGATTCTCAACAGAAATGTCT-AGTTTTAATTTATAGAAGGATGAACCAAAGACAACCTACATTAAAATACATTT-
s panTro4.chr12              31252045 127 + 134246214 AGTCTTGTCATTTCACAAGTGAATGTCACACACAAAGAGTAGAGGGAACAAAGTGATTCTCAACAGAAATGTCT-AGTTTTAATTTATAGAAGGATGAACCAAAGACAACCTACATTAAAATACATTT-
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78453540 127 - 136387465 AGTCTTGTTGTTTCACAAGTGAATGTCATACACAAAGAGTAGAGGGAACAAAGTGATTCTCAACAGAAATGTCT-AGTTTTAATTTATAGAAGGATGAACCAAAGACAACCCACATTAAAATACATTT-
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54656303 127 + 123690457 AGTCTTGTCATTTCACAAATGAATGTCACACACAAAGAGTAGAGGGAACAAAGTGATTCTCAACAGAAATGTCT-AGTTTTAATTTATAGAAGGATGAACCAAAGACAACCTACATTAAAATACATTT-
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79556977 127 - 134985053 AGTCTTGTTGTTTCACAAGTGAATGTCATACGCAAAGAGTAAAGGGAACAAAGTGGTTCTCAACAGAAATGCCT-AGTTTTAATTTATAGAAGGATAAACCAAAGACAACCCAATTTAAAATACATTT-
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80656579 127 - 137757926 AGTCTTGTTGTTTCACAAGTGAATGTCATACGCAAAGAGTAAAGGGAACAAAGTGGTTCTCAACAGAAATGCCT-AGTTTTAATTTATAGAAGGATAAACCAAAGACAACCCAATTTAAAATACATTT-
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78606457 127 - 132286798 agtcttgttGTTTCACAAGTGAATGTCATACGCAAAGAGTAGAGGGAACAAAGTGGTTCTCAACAGAAATGCCT-AGTTTTAATTTATAGAAGGATAAACCAAAGACAACccacattaaaatacattt-
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74536976 127 - 128539186 AGTCTTGTTGTTTCACAAGTGAATGTCATATGCAAAGAGTAGAGGGAACAAAGTGGTTCTCAACAGAAATGCCT-AGTTTTAATTTATAGAAGGATAAACCAAAGACAACCCACATTAAAATACATTT-
i chlSab2.chr11             I 267 C 0
s calJac3.chr9               77302838 125 - 124281992 AGTTTTTTCATTTCACAAAAGAATGTCATACAC--AGAGTGGAGGGAACAAAGTAATTCTCAACTGAAATATCT-AGTTTTAATTTATAGAAGAATGGACCAAAGACAATCTACATTAAAAAAATTTT-
i calJac3.chr9              C 0 C 0
s mm10.chr10                126805324  96 + 130694993 --TCTAATAACTTCAAGAGAGAATGTCATACACA--------AGGAAACAAAGCCACCCTCAACCAAAAC---------------------AGACTAAGGTCAAG-CAAGCTACATTGAAATATATTT-
i mm10.chr10                C 0 I 2124
s canFam3.chr10              67260268 118 -  69331447 AGTCTCATCATTTCAAAAGTGAGT-----ACCTAAAGGGTAAGAGGAACAAACTGATCTACAACTAAAATGCCTCCATTTTAATTTATGTAAGGATTGGCCAAA------CTATGCTAAAATATGTGTT
i canFam3.chr10             C 0 C 0

a score=2002634.000000
s hg38.chr12_GL383550v2_alt     16061 622 +    169178  
s panTro4.chr12              31252172 631 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78453667 631 - 136387465  
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54656430 630 + 123690457  
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79557104 629 - 134985053  
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80656706 629 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78606584 638 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74537103 634 - 128539186  
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77302963 646 - 124281992  
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67260386 749 -  69331447  
i canFam3.chr10             C 0 C 0
e mm10.chr10                126805420 2124 + 130694993 I

a score=282015.000000
s hg38.chr12_GL383550v2_alt     16683 73 +    169178 AGGTTAAGTCAGAACAAAAGA--TCAGGCTGCCCAACTCAAATGAGCCAGACAATACAACCAAAACCTTTATCAA
s panTro4.chr12              31252803 73 + 134246214 AGTTTAAGTGAGAACAAAAGA--TCAGGCTGCCCAACTCAAATGAGCCAGACAATACAACCAAAACCTTTATCAA
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78454298 73 - 136387465 AGATTAAGTCAGAACAAAAGA--TCAGGCTGCCCAACTCAAATAAGCCAGACAATACAACCAAAACCTTTATCAA
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54657060 73 + 123690457 AGGTTAAGTCAGAACAAAAGA--TCAGGCTGCCCAACTCAAATGAGCCAGACAATACAACCGAAACCTTTAACAA
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79557733 73 - 134985053 AGATTAAGTTAGAACAAAAGA--TCAGGCTGCCCAACTCAAATGAGCCAGACAATACAACCAAAACCTTTACCAA
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80657335 73 - 137757926 AGATTAAGTTAGAACAAAAGA--TCAGGCTGCCCAACTCAAATGAGCCAGACAATACAACCAAAACCTTTACCAA
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78607222 73 - 132286798 AGATTAAGTTAGAACAAAAGA--TCAGGCTGCCCAACTCAAATGAGCCAGACAATACAACCAAAACCTTTACCAA
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74537737 73 - 128539186 AGATTAAGTTAGAACAAAAGA--TCAGGCTGCCGAACTCAAATGAGCCAGACAATACAACCAAAACCTTTACCAA
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77303609 72 - 124281992 AGATCAAGTCGGAACAAAAGATTTCAGGCTGCGCCACTCAAATGAGCCAGGCAATACAACCAAAACCTT---CAA
i calJac3.chr9              C 0 C 0
s mm10.chr10                126807544 73 + 130694993 AGGATGAGTTACAATCAAAGA--TTAAAGGCTCGGACTCAAAAGATCCAGAAAACACAGCCAAAGCCTTCATCAA
i mm10.chr10                I 2124 I 227
s canFam3.chr10              67261135 75 -  69331447 AGACTGAGTCAAAACAAAAAACTTAAGGCTGCCCAACCCAAATGAACTAGACAAGGTAACCAAAATCCCCACCAA
i canFam3.chr10             C 0 C 0

a score=149005.000000
s hg38.chr12_GL383550v2_alt     16756 42 +    169178 GTACAAACAAAAATTCACCCAAACAAAATTGTGTTGTTAGGT
s panTro4.chr12              31252876 42 + 134246214 GTACAAACAAAAATTCACCCAAACAAAATTGTGTTGTTAGGT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78454371 42 - 136387465 GTACAAACAAAAATTCACCCAAACAAAATTGTGTTGTTGGGT
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54657133 42 + 123690457 GTACAAACAAAAATTCACCCAAACAAAATTGTGTTGTTAGGC
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79557806 42 - 134985053 GTACAAACAAAAATTCACCCAAACAAAAGTGTGGTGTTAGGT
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80657408 42 - 137757926 GTACAAACAAAAATTCACCCAAACAAAAGTGTGGTGTTAGGT
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78607295 42 - 132286798 GTACAAACAAAAATTCACCCAAACAAAAGTGTGGTGTTAGGT
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74537810 42 - 128539186 GTACAAACAAAAATTCACCCAAACAAAAGTGTGGTGTTAGGT
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77303681 42 - 124281992 GTACAAACAAAAATTCACCCAAACGAAATTGCGGTGTTAGGT
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67261210 41 -  69331447 GCACAAACAAAAATTCACTGAAACAGAATTACA-TGTTGGGC
i canFam3.chr10             C 0 C 0
e mm10.chr10                126807617 227 + 130694993 I

a score=6590890.000000
s hg38.chr12_GL383550v2_alt     16798 1679 +    169178  
s panTro4.chr12              31252918 1680 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78454413 1676 - 136387465  
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54657175 1663 + 123690457  
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79557848 1656 - 134985053  
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80657450 1658 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78607337 1659 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74537852 1653 - 128539186  
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77303723 1639 - 124281992  
i calJac3.chr9              C 0 C 0
s mm10.chr10                126807844 1601 + 130694993  
i mm10.chr10                I 227 I 1078
s canFam3.chr10              67261251 1628 -  69331447  
i canFam3.chr10             C 0 C 0

a score=104130.000000
s hg38.chr12_GL383550v2_alt     18477 29 +    169178 AAAATGTGCATTAAAAATTT-TGGATGAGA
s panTro4.chr12              31254598 29 + 134246214 AAAATGTGCATTAAAAATTT-TGGATGAGA
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78456089 29 - 136387465 AAAATGTGCATTAAAAATTT-TGGATGAGA
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54658838 29 + 123690457 AAAATGTGCATTAAAAATTT-TGGATGAGA
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79559504 29 - 134985053 AAAATGTGCATTAAAAATTT-TGGATGAGA
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80659108 29 - 137757926 AAAATGTGCATTAAAAATTT-TGGATGAGA
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78608996 29 - 132286798 taaatttgcattaaaaattt-tGGATGAGA
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74539505 29 - 128539186 AAAATGTGCATTAAAAATTT-TGGATGAGA
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77305362 30 - 124281992 AAAATGTGCATTAACAATTTGGGGATGAGA
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67262879 29 -  69331447 AAAATGTGTCTTAAAAATTG-TGGATGAAA
i canFam3.chr10             C 0 C 0
e mm10.chr10                126809445 1078 + 130694993 I

a score=133365.000000
s hg38.chr12_GL383550v2_alt     18506 27 +    169178 GCACATTTCTGTAAGGCAAAATTGGTT
s panTro4.chr12              31254627 27 + 134246214 GCACATTTCTGTAAGGCAAAATTGGTT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78456118 27 - 136387465 GCACATTTCTGTAAGGCAAAATTGGTT
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54658867 27 + 123690457 GCACATTTCTGTAAGGCAAAATTGGTT
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79559533 27 - 134985053 GCACATTTCTGTAAGGCAAAATTGGTT
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80659137 27 - 137757926 GCACATTTCTGTAAGGCAAAATTGGTT
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78609025 27 - 132286798 GCACATTTCTGTAAGGCAAAATTGGTT
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74539534 27 - 128539186 GCACATTTCTGTAAGGCAAAATTGGTT
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77305392 27 - 124281992 GCACATTTCTGTAAGTCAAAATTGGTT
i calJac3.chr9              C 0 C 0
s mm10.chr10                126810523 27 + 130694993 GCACATTTCTGTGGGGCAAAATTGTTT
i mm10.chr10                I 1078 I 1078
s canFam3.chr10              67262908 27 -  69331447 GCACATTTCTGTAAGGCAAAATTGGTT
i canFam3.chr10             C 0 C 0

a score=92466.000000
s hg38.chr12_GL383550v2_alt     18533 23 +    169178 TGTGGTTTCTATTGTAAGAAAGA
s panTro4.chr12              31254654 23 + 134246214 TGTGGTTTCTATTGTAAGAAAGA
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78456145 23 - 136387465 TATGGCTTCTATTGTAAGAAAGA
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54658894 23 + 123690457 TGTGGTTTCTATTGTAAGAAAGA
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79559560 23 - 134985053 TGTGGTTTCTATTGTAAGAAAGA
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80659164 23 - 137757926 TGTGGTTTCTATTGTAAGAAAGA
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78609052 23 - 132286798 TGTGGTTTCTATTGTAAGAAAGA
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74539561 23 - 128539186 TGTGGTTTCTATTGTAAGAAAGA
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77305419 23 - 124281992 TGTGGTTTCTATTGTAAGAAAGA
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67262935 23 -  69331447 TGTGGTTTCTACTATAAGAAAGA
i canFam3.chr10             C 0 C 0
e mm10.chr10                126810550 1078 + 130694993 I

a score=4190129.000000
s hg38.chr12_GL383550v2_alt     18556 1139 +    169178  
s panTro4.chr12              31254677 1139 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78456168 1135 - 136387465  
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54658917 1139 + 123690457  
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79559583 1137 - 134985053  
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80659187 1137 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78609075 1137 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74539584 1135 - 128539186  
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77305442 1121 - 124281992  
i calJac3.chr9              C 0 I 289
s mm10.chr10                126811628 1033 + 130694993  
i mm10.chr10                I 1078 C 0
s canFam3.chr10              67262958 1137 -  69331447  
i canFam3.chr10             C 0 C 0

a score=161296.000000
s hg38.chr12_GL383550v2_alt     19695 43 +    169178 ATAA--TTATAG---TCTTGCTCAAAATCCAGCACTATCACTGTATTG
s panTro4.chr12              31255816 43 + 134246214 ATAA--TTATAG---TCTTGCTCAAAATCCAGCACTATCACTGTGTTG
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78457303 46 - 136387465 ATAA--TTATAGTCTTCTTGCTCAAAATCTAGCACTATCACTGTGTTG
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54660056 46 + 123690457 ATAA--TTATAGTCTTCTTGCCCAAAATCTAGCACTATCACTGTGTTG
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79560720 46 - 134985053 ATAA--TTATAGTCTTCTTGCTCAAAATCCAGCACTATCACTGTGTTG
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80660324 46 - 137757926 ATAA--TTATAGTCTTCTTGCTCAAAATCCAGCACTATCATTGTGTTG
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78610212 46 - 132286798 ATAA--TTATAGTCTTCTTGCTCAAAATCCAGCACTATCACTGTGTTG
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74540719 46 - 128539186 ATAA--TTATAGTCTTCTTGCTCAAAATCCAGCACTATCACTGTGTTG
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77306852 46 - 124281992 ATAA--TTATAGTCTTCTTGCTCAAAATCCAGCTTCATCACTGTGTTG
i calJac3.chr9              I 289 C 0
s mm10.chr10                126812661 36 + 130694993 ------------CTTTCCTGCTCAAAACTGAGCAGCACGGCTGTATTG
i mm10.chr10                C 0 C 0
s canFam3.chr10              67264095 47 -  69331447 -TCATCTTGTGGTCATCTTGCTCAAAATCCAGCACCGTGGCCATATTG
i canFam3.chr10             C 0 C 0

a score=665095.000000
s hg38.chr12_GL383550v2_alt     19738 201 +    169178 CTCTTGAAATAATCAACAGTACTACC-------AAAAAATGGCAGCATGTGGGGGTTTTCTGCTAAGCAATACCCCAGCTTCCTGAGACACTCCGAGTTGTGGTGTAAGTAGGTAGCTTG-CAAACAAGGCCACTTTAAGACAAGCAA-GTTCTTCCTCTTGG-AAAAGTAGAGTCTAGGCTTCCAGAAGC----TGACTATTTGACTTGGCTTG
s panTro4.chr12              31255859 201 + 134246214 CTCTTGAAATAATCAATAGTACTACC-------AAAAAATGGCAGCATGTGGGGGTTTTCTGCTAAGCAATACTCCAGCTTCCTGAGACACTCCGAGTTGTGGTGTAAGTAGGTGGCTTG-CAAACAAGGCCACTTTAAGACAAGCAA-GTTCTTCCTCTTGG-AAAAGTAGAGTCTAGGCTTCCAGAAAC----TGACTATTTGACTTGGCTTT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78457349 199 - 136387465 CTCTTGAAATAATCAACAGTACTACCA------AAAAAATGGCAGCATGTGGGGGTTTTCTGCTAAGCAACACTCCAGCTTCCTGAGACACTCCGAGTTGTGGTGTAAGTAGGTGGCTTGAAAAACAAGGCCACTTTAAGACAAGTAA-GTTCTTCCTCTTAG-AAAAGTAGAGTCTATGCTTCCAGAA--------ACTATTTGACTTGGCTTT
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54660102 202 + 123690457 CTCTTGAAATAATCAACAGTACTACCA------AAACAATGGCAGCATGTGGGGCTTTTCTGCTGAGCAACACTCCAGCTTCCTGAGACACTCTGAGCTGTGGTGTAAGTAGGTGGCTTG-CAAACAAGGCCACTTTAAGACAAGCAA-GTTCTTCTTCTTGG-AAAAATAGAGTCTAGCCTTCCAGAAAC----TGACTATTTGACTTGGCTTT
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79560766 203 - 134985053 CTCCTGAAATAATCAACAGTACTACCA------AAAAAATGGCAGCATGTGGGGCTTTTCTGCTGAGCAATACTCCAGCTTCCTGAGACACTCTGAGTTGTGGTGTAAGCAGGTAGCTTG-CAAACAAGGCCACTTCAAGACAAGCAA-GTTCTTCCTCTTGGAAAAAGTAGAGTCCAGGCTTCCAGAAGC----TGACTATTTGACTTGGCTTT
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80660370 203 - 137757926 CTCCTGAAATAATCAACAGTACTACCA------AAAAAATGGCAGCATGTGGGGCTTTTCTGCTGAGCAATACTCCAGCTTCCTGAGACACTCTGAGTTGTGGTGTAAGCAGGTAGCTTG-CAAACAAGGCCACTTCAAGACAAGCAA-GTTCTTCCTCTTGGAAAAAGTAGAGTCCAGGCTTCCAGAAGC----TGACTATTTGACTTGGCTTT
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78610258 203 - 132286798 CTCCTGAAATAATCAACAGTACTACCa------aaaaaaTGGCAGCATGTGGGGCTTTTCTGCTGAGCAATACTCCAGCTTCCTGAGACACTCTGAGTTGTGGTGTAAGCAGGTAGCTTG-CAAACAAGGCCACTTTAAGACAAGCAA-GTTCTTCCTCTTGGAAAAAGTAGAGTCCAGGCTTCCAGAAGC----TGACTATTTGACTTGGCTTT
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74540765 202 - 128539186 CTCCTGAAAGAATCAACAGTACTACCA------AAAAAATGGCAGCATGTGGGGCTTTTCTGCTGAGCAATACTCCAGCTTCCTGAGACACTCTGAGTTGTGGTGTAAGCAGGTAGCTTG-CAAACAAGGCCACTTTAAGACAAGCAA-GTTCCTCCTCTTGG-AAAAGTAGAGTCCAGGCTTCCAGAAGC----TGACTATTTGACTTCGCTTT
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77306898 202 - 124281992 CTCCTGAAATAATCAACAGTACTACCA------AAAACATGGCAGCATGTGGGGTTTTTCTGCTGACCAACACTCCAGCTTCCTGACACACTCTGAGTTGTGGTGTAAGTACATGGCTTG-CAAACAAGGCCACTTTAAGACAAGGAA-GTTCTTCCTCTTCA-AAAGGTAGAGTCTAGGCTTCCAGAAGC----TGACTATTTGACTTGGCTTT
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67264142 192 -  69331447 CTCCTGCAATAATCTACATTACCACCAAAAAAGAAAAAACGGCAGCCAGTGGGGCTTTTCTGCTGAGCAGCAGACCAGTTTCCTAAAATAATCTGAGTTGTA---------------TTG------GTGGACTCCTGAAGACAGGGAACGTATTGCCTCTTGG-GAAGATAGATTCT-GGCCTCCAGAGCCACCTTGATTGTTTGACTTGGCCTT
i canFam3.chr10             C 0 C 0
e mm10.chr10                126812697   0 + 130694993 C

a score=2437982.000000
s hg38.chr12_GL383550v2_alt     19939 837 +    169178  
s panTro4.chr12              31256060 837 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78457548 837 - 136387465  
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54660304 841 + 123690457  
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79560969 841 - 134985053  
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80660573 840 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78610461 853 - 132286798  
i papAnu2.chr11             C 0 I 659
s chlSab2.chr11              74540967 841 - 128539186  
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77307100 839 - 124281992  
i calJac3.chr9              C 0 C 0
e mm10.chr10                126812697   0 + 130694993 C
e canFam3.chr10              67264334   0 -  69331447 C

a score=992662.000000
s hg38.chr12_GL383550v2_alt     20776 437 +    169178 catctccctgggacagagcacctgggggaaggggcggctgtgggtgtagcttc-agcagacttaagcattcctgcctaccagctttgaagagagcagcagatctcccagcacagcaatcaagctctgctaagagacagactgcctcctcaagttggtcc----ctgacccccatgcctcctgactgggagacacctcccagcagtgatcaacagacacctcatacaggagcactctggctggcatctggtgtgttcccctctgggatgaagcttccagaggaaggaacaggcagcattctttgctgttttgcagcctctgctggtgatactcaggaaaacagggtctggagtggacctccagcaaactccagcagacctgcagcagaagggactgactattagaaggaaaactaacaaacagaaaggaatagcatcaacagc
s panTro4.chr12              31256897 437 + 134246214 catctccctgggacagagcacctgggggaaggggcggctgtgggtgtagcttc-agcagacttaagcattcctgcctaccggctttgaagagagcagcagatctcccagcgcagcaatcaagctctgctaagagacagactgcctcctcaagttggtcc----ctgacccccatgcctcctgactgggagacacctctcagcagtgatcaacagacacctcatacaggagagctctggctggcatctggtgtgttcccctctgggatgaagcttccagaggaaggaacaggcagcattctttgctgttctgcagcctctgctggtgatactcaggaaaacagggtctggagtggacctccagcaaactccagcagacctgcagcagaggggcctgactattagaaggaaaactagcaaacagaaaggaatagcatcaacagc
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78458385 437 - 136387465 catctccctgggacagagcacctgggggaaggggcggctgtggatgcagcttc-agcagacttaagcattcctgcctaccagctttgaagagagcagcagatctcccagcacagcaataaagctctgctaagagacagactgcctcctcaagttggtcc----ctgacccccatgcctcctgactgggagacacctcccagcagtggtcaacagacacctcatacaggagagctccggctggcatctggtgtgttcccctctgggatgaagcttccagaggaaggaacaggcagcattctttgctgttatgcagcctctgctggtgatactcaggaaaacagggtctggagtggacctccagcaaactccagcagacctgcagcagaggggcctgactgttagaaggaaaactaacaaacagaaaggaatagcatcaacaGC
i ponAbe2.chr12             C 0 I 3639
s nomLeu3.chr11              54661145 437 + 123690457 catatccctgggacagagcacctgggggaaggggcggctgtgggtgcagattc-agcagacttaagcattcctgcctaccggctttgaagtgagcagcagatctcccagcacagcaatcaagctctgctaagagacagactgcctcctcaagtgggtcc----ctgacccccatgcctcctgactgggagacacttcccagcagtggtcaacagacacctcatacaggagagctctggctggcatctggtgggtccccctctgggatgaagcttccagaggaagggacaggcagcattctttgctgttctgcagcctctgctggtgatactccggcaaacagggtctgtagtggacctccagcaaactccagcagacctgcagcagaggggcctgactgttagaaggaaaactaacaaacagaaaggaatagcatcaacagc
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79561810 441 - 134985053 catctccctgggacagagcaccaagaggaaggtgtggctgtgggtgcagcttc-agcagtcttaaacattcttgcctactggctttgaagagagcagcagatctcccagcagagcaatcaagctctgctaagagacagactgcctcctcaagtgggtccctgactgacccccacgcctcctgactagaagacacctcccagcaggggtcaacagacacctcatataggagagctctggttggcatccggtgggtgcccccctgcaatgaagcttccagaggaaggaacaggcagcattctttgctgttctgcagcctctgctggtgatacccaggcaaacagggtcaggagtggacctctagcaaactccagcagacctgcagcaaaggggcctgactgttagaaggaaaactaacaaacagaaaggaatagcatcaacatc
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80661413 441 - 137757926 catctccctgggacagagcacctagaggaaggtgtggctgtgggtgcagcttc-agcagtcttaaacattcttgcctactggctttgaagagagcagcagatctcccagcagagcaatcaagctctgctaagagacagactgcctcctcaagtgggtccctgactgacccccacgcctcctgactagaagacacctcccagcaggggtcaacagacacctcatataggagagctctggttggcatccggtgggtgcccccctgcaatgaagcttccagaggaaggaacaggcagcattctttgctgttctgcagcctctgctggtgatacccaggcaaacagggtcaggagtggacctctagcaaactccagcagacctgcagcaaaggggcctgactgttagaaggaaaactaacaaacagaaaggaatagcatcaacatc
i macFas5.chr11             C 0 C 0
s chlSab2.chr11              74541808 441 - 128539186 catctccctgggacagagcccctggaggaaggtgtggctgtgggtgcagcttc-agcagtcttaaacattcttgcctactggctttgaagagagaagcagatctcccagcagagcaatcaagctctgctaagagacagactgcctcctcaagtgggtccctgactgacccctacgcctcctgactagaagacacctcccagcaggggtcaacagacacctcatataggagagctctggttggcatccggtgggtgcccccctgcgatgaagcttccagaggaaggaacaggcagcattctttgctgttctgcagcctctgctggtgatacccaggcaaacagggtcaggagtggacctccagcaaactccagcagacctgcagcaaaggcacctgactgttagaaggaaaactaacaaacagaaaggaatagcatcaacatc
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77307939 418 - 124281992 catctccctggggcagagcacct----gagggggcagctgtaggcacagcctcaagcagacttaaaccttcctgtctgccagctctgaagagagcagtgggtgtcccagcacagcaactgagctctgctaaggcacaaactgcctcttgaagtgggtcc----ctgatccccatgcctcctga---------------cagcagggattgacagacacctcatatagaagagctctggctggcatctggtgggtgcccctcttggatgaagcttccagaggaagaaacaggcagcaatctttgctattctgcagcctctg-tggtgataccctggcaaacgtggtctggagtgtacctccagcaaactccaacagacctgcagcagaagggcctgactgttagaagaaaaactagcaaacagaaaggaatatcatcaacatg
i calJac3.chr9              C 0 C 0
e mm10.chr10                126812697   0 + 130694993 C
e canFam3.chr10              67264334   0 -  69331447 C
e papAnu2.chr11              78611314 659 - 132286798 I

a score=213291.000000
s hg38.chr12_GL383550v2_alt     21213 129 +    169178 aacaaaaagaacatccacacagaaactccatccaaaggtcaacaacatcaaagaccaaaggtagataaatccacgaagattaggaaaaaccagtgcaaataggctaaaattttcaaaaaccagaatgcc
s panTro4.chr12              31257334 129 + 134246214 aacaaaaagaacatccacacagaaactccatccaaaggtcaacaacatcaaagaccaaaggtagataaatccacgaagattaggaaaaaccagtgcaaataggctaaaattttcaaaaaccagaatacc
i panTro4.chr12             C 0 C 0
s nomLeu3.chr11              54661582 128 + 123690457 aacaaaaatgacatccacacagaaactccatacaaagatcaccaacatcaaagaccaaaggtagataaatccacgaggattaggaaaaaccagtgcaaaaaggctaaaaatttc-aaaaccagaatgcc
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79562251 129 - 134985053 aacaaaaaggacatccacacagaaactccatccaaagatcaccaacatcaaagaccaaaggtagataaatccatgaagattaagaaaaaccagtgcagaaaggctaaaaattccaaaaaccagaatgcc
i rheMac3.chr11             C 0 I 3910
s macFas5.chr11              80661854 129 - 137757926 aacaaaaaggacatccacacagaaactccatccaaagatcaccaacatcaaagaccaaaggtagataaatccatgaagattaagaaaaaccagtgcagaaaggctaaaaattccaaaaaccagaatgcc
i macFas5.chr11             C 0 C 0
s chlSab2.chr11              74542249 129 - 128539186 aacaaaaaggacatccacacagaaactccatccaaaggtcaccaacatcaaagaccaatggtagataaatccacgaagattaagaaaaaccagtgcagaaaggctaaaaattccaaaaaccagaatgcc
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77308357 127 - 124281992 aatgaagaagaaatccacacacaaaccccatctgaaggtcaccaacatcaaagaccaaaggtagataaattcatgaagatgaggaaaaagcagtgcaa--aggctgtaaattccaaagaccagaacacc
i calJac3.chr9              C 0 I 17
e mm10.chr10                126812697   0 + 130694993 C
e canFam3.chr10              67264334   0 -  69331447 C
e papAnu2.chr11              78611314 659 - 132286798 I
e ponAbe2.chr12              78458822 3639 - 136387465 I

a score=1209120.000000
s hg38.chr12_GL383550v2_alt     21342 1004 +    169178  
s panTro4.chr12              31257463 1001 + 134246214  
i panTro4.chr12             C 0 C 0
s nomLeu3.chr11              54661710 1008 + 123690457  
i nomLeu3.chr11             C 0 I 9880
s macFas5.chr11              80661983 1005 - 137757926  
i macFas5.chr11             C 0 C 0
s chlSab2.chr11              74542378 1004 - 128539186  
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77308501  992 - 124281992  
i calJac3.chr9              I 17 C 0
e mm10.chr10                126812697    0 + 130694993 C
e canFam3.chr10              67264334    0 -  69331447 C
e papAnu2.chr11              78611314  659 - 132286798 I
e rheMac3.chr11              79562380 3910 - 134985053 I
e ponAbe2.chr12              78458822 3639 - 136387465 I

a score=1322025.000000
s hg38.chr12_GL383550v2_alt     22346 1728 +    169178  
s panTro4.chr12              31258464 1728 + 134246214  
i panTro4.chr12             C 0 C 0
s macFas5.chr11              80662988 1737 - 137757926  
i macFas5.chr11             C 0 C 0
s chlSab2.chr11              74543382 1732 - 128539186  
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77309493 1741 - 124281992  
i calJac3.chr9              C 0 I 14976
e mm10.chr10                126812697    0 + 130694993 C
e canFam3.chr10              67264334    0 -  69331447 C
e papAnu2.chr11              78611314  659 - 132286798 I
e rheMac3.chr11              79562380 3910 - 134985053 I
e nomLeu3.chr11              54662718 9880 + 123690457 I
e ponAbe2.chr12              78458822 3639 - 136387465 I

a score=349613.000000
s hg38.chr12_GL383550v2_alt     24074 692 +    169178  
s panTro4.chr12              31260192 688 + 134246214  
i panTro4.chr12             C 0 C 0
s macFas5.chr11              80664725 692 - 137757926  
i macFas5.chr11             C 0 I 661
s chlSab2.chr11              74545114 669 - 128539186  
i chlSab2.chr11             C 0 C 0
e mm10.chr10                126812697   0 + 130694993 C
e canFam3.chr10              67264334   0 -  69331447 C
e calJac3.chr9               77311234 14976 - 124281992 I
e papAnu2.chr11              78611314 659 - 132286798 I
e rheMac3.chr11              79562380 3910 - 134985053 I
e nomLeu3.chr11              54662718 9880 + 123690457 I
e ponAbe2.chr12              78458822 3639 - 136387465 I

a score=100479.000000
s hg38.chr12_GL383550v2_alt     24766 391 +    169178 acggatggtaagaatcaatatcatgaaaatggccatactgcccaaagtaatttatagattcaatgctatctccatcaagctaccattgactttcttcacaaaattagaaaaaactacgttaaatttcattggaaccaaaaaggagcccatatagccaagacaatcctaagcaaaaagaacaaaactgaaggcatcatgctacctgacttcaaactatactacaagcttacagtaaccaaaacaacatggtattggtaccaaaacagagatataggccaatcgaacagaacagaggactcagaagtaatgccacacatctacaaccatctgatctctgacaaacctgacaaaaacaagcaatggggaaaggattccctatttaataaataat
s panTro4.chr12              31260880 391 + 134246214 acggatggtaagaatcaatatcatgaaaatggccatactgcccaaagtaatttatagattcaatgctatctccatcaagctaccattgactttcttcacaaaattagaaaaaactacgttaaatttcattggaaccaaaaaggagcccatatagccaagacaatcctaagcaaaaagaacaaaactgaaggcatcatgctacctgacttcaaactatactacaagcctacagtaaccaaaacaacatgttactggtaccaaaacagagatataggccaatcgaacagaacagaggactcagaaataatgccacacatctacaaccatctgatctttgacaaacctgacaaaaaaaagcaatggggaaaagattccctatttaataaataat
i panTro4.chr12             C 0 M 656
s chlSab2.chr11              74545783 391 - 128539186 atggataggaagaatcaatatcgtgaaaatggccatactgcccaaagtaatttacagattcaatgttatctccatcaagctaccattgactttcttcacaaaattagaaaaaactactttaaatttcactagaaccaaaaaggagcccatacagccaagacaatcctaagccaaaagaacaaagctggaggcatcatgctacctgacttcaaactatactacaaggctatggtaaccaaagcagcatggtactggtaccaaaacagagatatagaccaatggactagaacagaggtctcagaaataataccacacatctacaaccatctgatctttgacaaacctgacaataacaagcaatgggaaaaggattccctatttaataaataat
i chlSab2.chr11             C 0 C 0
e mm10.chr10                126812697   0 + 130694993 C
e canFam3.chr10              67264334   0 -  69331447 C
e calJac3.chr9               77311234 14976 - 124281992 I
e papAnu2.chr11              78611314 659 - 132286798 I
e macFas5.chr11              80665417 661 - 137757926 I
e rheMac3.chr11              79562380 3910 - 134985053 I
e nomLeu3.chr11              54662718 9880 + 123690457 I
e ponAbe2.chr12              78458822 3639 - 136387465 I

a score=8043.000000
s hg38.chr12_GL383550v2_alt     25157 149 +    169178 gttgggaaaactggctagccatatgcagaaaattgaaactggaccccttccttacaccttatacaaaaattaactcacagatttaattttttaattaaaattaaaatctttaattaaagatttaaacgtaagacttaaaacaataaaaa
s chlSab2.chr11              74546174 120 - 128539186 gttgggaaaactggctagccatatgcagaaaactgaaactggaccccttccatacaccttacacaaaaattaactca-aga----------------------------tggattaaagatttaaaagtaagaactaaaaccataaaaa
i chlSab2.chr11             C 0 C 0
e mm10.chr10                126812697   0 + 130694993 C
e canFam3.chr10              67264334   0 -  69331447 C
e calJac3.chr9               77311234 14976 - 124281992 I
e papAnu2.chr11              78611314 659 - 132286798 I
e macFas5.chr11              80665417 661 - 137757926 I
e rheMac3.chr11              79562380 3910 - 134985053 I
e nomLeu3.chr11              54662718 9880 + 123690457 I
e ponAbe2.chr12              78458822 3639 - 136387465 I
e panTro4.chr12              31261271 656 + 134246214 M

a score=190086.000000
s hg38.chr12_GL383550v2_alt     25306 734 +    169178  
s panTro4.chr12              31261927 734 + 134246214  
i panTro4.chr12             M 656 C 0
s chlSab2.chr11              74546294 732 - 128539186  
i chlSab2.chr11             C 0 C 0
e mm10.chr10                126812697   0 + 130694993 C
e canFam3.chr10              67264334   0 -  69331447 C
e calJac3.chr9               77311234 14976 - 124281992 I
e papAnu2.chr11              78611314 659 - 132286798 I
e macFas5.chr11              80665417 661 - 137757926 I
e rheMac3.chr11              79562380 3910 - 134985053 I
e nomLeu3.chr11              54662718 9880 + 123690457 I
e ponAbe2.chr12              78458822 3639 - 136387465 I

a score=50521.000000
s hg38.chr12_GL383550v2_alt     26040 564 +    169178  
s panTro4.chr12              31262661 569 + 134246214  
i panTro4.chr12             C 0 C 0
e mm10.chr10                126812697   0 + 130694993 C
e canFam3.chr10              67264334   0 -  69331447 C
e calJac3.chr9               77311234 14976 - 124281992 I
e chlSab2.chr11              74547026   0 - 128539186 C
e papAnu2.chr11              78611314 659 - 132286798 I
e macFas5.chr11              80665417 661 - 137757926 I
e rheMac3.chr11              79562380 3910 - 134985053 I
e nomLeu3.chr11              54662718 9880 + 123690457 I
e ponAbe2.chr12              78458822 3639 - 136387465 I

a score=9614.000000
s hg38.chr12_GL383550v2_alt     26604 6 +    169178 aaagac
s panTro4.chr12              31263230 6 + 134246214 aaagac
i panTro4.chr12             C 0 C 0
s nomLeu3.chr11              54672598 6 + 123690457 aaagaa
i nomLeu3.chr11             I 9880 C 0
s rheMac3.chr11              79566290 6 - 134985053 aaagaa
i rheMac3.chr11             I 3910 C 0
s macFas5.chr11              80666078 6 - 137757926 aaagaa
i macFas5.chr11             I 661 C 0
s papAnu2.chr11              78611973 6 - 132286798 aaagaa
i papAnu2.chr11             I 659 C 0
s calJac3.chr9               77326210 6 - 124281992 aaagaa
i calJac3.chr9              I 14976 C 0
e mm10.chr10                126812697 0 + 130694993 C
e canFam3.chr10              67264334 0 -  69331447 C
e chlSab2.chr11              74547026 0 - 128539186 C
e ponAbe2.chr12              78458822 3639 - 136387465 I

a score=269512.000000
s hg38.chr12_GL383550v2_alt     26610 116 +    169178 aaggtgagacatatacaccatggaatactatgcagccat-aaaaaggatgagttcatgtcctttgcagggacatggatgaagctgaaaaccatcattctcagcaaactaacacaaga
s panTro4.chr12              31263236 116 + 134246214 aaggtgagacatatacaccatggaatactatgcagccat-aaaaaggatgagttcatgtcctttgtagggacatggatgaagctgaaaaccatcattctcagcaaactaacacaaga
i panTro4.chr12             C 0 C 0
s nomLeu3.chr11              54672604 117 + 123690457 aaggtgagacatatacaccatggaatactatacagccataaaaaaggatgagttcatgtccttcgcagggacatagatgaagctgaaaaccatcattctcagcaaactaacacaaga
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79566296 117 - 134985053 aaggtgagatatatacaccatagaatactaaacagtcataaaaaaggatgagttcatgtcctttgcagggacatggatgaagctgaaaaccatcattctcagcaaactaacacaaga
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80666084 117 - 137757926 aaggtgagatatatacaccatagaatactaaacagtcataaaaaaggatgagttcatgtcctttgcagggacatggatgaagctgaaaaccatcattctcagcaaactaacacaaga
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78611979 117 - 132286798 aaggTGAgatatatacaccatagaatactaaacagtcataaaaaaggatgagtttatgtcctttgcagggacatggatgaagctgaaaaccatcattctcagcaaactaacacaaga
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74547026 117 - 128539186 aaggtgagctatatacaccgtagaatactaaacagtcataaaaaaggataagttcatgtcctttgcagggacatggatgaagctgaaaaccatcattctcagcaaactaacacaaga
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77326216 117 - 124281992 acagtggtacatatataccatggaatactatgcagccataaaaaaggatgagttcctgtctttttcagggacatgaatgaagctagaaaccataattctcagcaagctaacacagga
i calJac3.chr9              C 0 C 0
e mm10.chr10                126812697   0 + 130694993 C
e canFam3.chr10              67264334   0 -  69331447 C
e ponAbe2.chr12              78458822 3639 - 136387465 I

a score=757824.000000
s hg38.chr12_GL383550v2_alt     26726 257 +    169178 acagataactaaa---cactgcatgttctcactcataagtgggagttgaacaatg--agaatacatggacacagggagggaaacatcacacaccgg-ggcctgttggggggtggggggctaagggagggatagcattaggagaaatacctaatgtagatgatgggttgatgggtgcagcaaaccaccatgacacgtgtatacctatgtaacaaatctgcacgttctgcacatgtatcccagaacttaaagtataatTTTTTTA
s panTro4.chr12              31263352 257 + 134246214 acagataactaaa---cactgcatgttctcactcataagtgggagttgaacaatg--agaatacatggacacagggagggaaacatcacacaccgg-ggcctgttggggggtggggggctaagggagggatagcattaggagaaatacctaatgtagatgatgggttgatgggtgcagcaaaccaccatgacacgtgtatacctacgtaacaaatctgcacgttctgcacatgtatcccagaacttaaagtataatTTTTTTA
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78462461 260 - 136387465 acagaaaactaaa---cactgcatgttctcactcataagtgggaattgaacactgtaaaaatacatggacacagggagggaaacatcacacaccagcgttctgtcggggggtgggcggctaagggagggataacattaggagaaatacctaatgtagatgatgggttgatgggtgcagcaaaccaccatggcatgtgtatacctatgtaacaaatctgcacgttctgcacatgtatcccagaacttaaagtataatTTTTTTA
i ponAbe2.chr12             I 3639 C 0
s nomLeu3.chr11              54672721 257 + 123690457 acagaaaactaaa---cactgcatgttctcgctcacaagtgggagttgaacaatg--agaacacatggacacagggagggaaacatcacacactgg-ggcctgtcaggggctgaggggctaagggagggatagcattaggagaaatacctaatgtagatgatgggttgatgggtgcagcaaaccaccatggcacgtgtatacctatgtaacaaatctgcacgttctgcacatgtatcccagaacttaaagtataatTTTTTAA
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79566413 257 - 134985053 acagaaaactaaa---caccacatgttctcactcataagtgggagttgaacaatg--agaacacatggacacagggagggaaacatcacacactgg-ggtctgtcagggggtggggggctaagggagggatagcattaggagaaatacctaatgtagatgatgggttgatgggtgcagcaaaccaccatggcatgtgtgtacctatgtaacaaatctgcacgttctgcacatgtatcccagaacttaaagtataatTTTTTTA
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80666201 257 - 137757926 acagaaaactaaa---caccacatgttctcactcataagtgggagttgaacaatg--agaacacatggacacagggagggaaacatcacacactgg-ggtctgtcagggggtggggggctaagggagggatagcattaggagaaatacctaatgtagatgatgggttgatgggtgcagcaaaccaccatggcatgtgtgtacctatgtaacaaatctgcacgttctgcacatgtatcccagaacttaaagtataatTTTTTTA
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78612096 257 - 132286798 acagaaaactaaa---caccacatgttctcactcagaagtgggagttgaacaatg--agaacacatggacacagggagggaaacatcacacactgg-ggtctgtcagggggtggggggctaagggagggatagcattaggagaaatacctaatgtagatgatgggttgatgggtgcagcaaaccaccatggcatgtgtgtacctatgtaacaaatctgcacgttctgcacatgtatcccagaacttaaagtataattttttaa
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74547143 249 - 128539186 acagaaaactaaa---caccacatgttctcactcataagtgggagttgaacaatg--agaacacatggacagagggagggaaacatcacacactgg-ggtctgtcagggggtggggggctaagggagggatagcattaggagaaatacctaatgtagatgatgggttgatgggtgcagcaaaccaccatggcatgtgtgtacctatgtaacaaatctgcatgttctgca--------ccagaacttaaagtataatTTTTTTA
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77326333 250 - 124281992 actgaaaaccaaacagcatcacatgttctcactcataaatgggagttgaacaatg--agaacacatgcacacagggagggaaacaccccacactgg-ggcctgtcagggagtggggggctaggggagggatagcattaggagaaatacctaatgtagatgacagattgatgggttgagcaaaacaccatggcatgagtataactatgtaaaaa---------tcctgcacatgtatcccagaacttaaaatataa-tagaaaa
i calJac3.chr9              C 0 C 0
e mm10.chr10                126812697   0 + 130694993 C
e canFam3.chr10              67264334   0 -  69331447 C

a score=2061703.000000
s hg38.chr12_GL383550v2_alt     26983 590 +    169178  
s panTro4.chr12              31263609 590 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78462721 590 - 136387465  
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54672978 588 + 123690457  
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79566670 589 - 134985053  
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80666458 589 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78612353 589 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74547392 589 - 128539186  
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77326583 588 - 124281992  
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67264334 617 -  69331447  
i canFam3.chr10             C 0 C 0
e mm10.chr10                126812697   0 + 130694993 C

a score=556210.000000
s hg38.chr12_GL383550v2_alt     27573 175 +    169178 caaacctgaaggcagaagtcccatgctaaggatggcggagtggaaggatttgagtagcacggactctgatgca-tgtggggctattccctaccatggactgcccacctctaaacttcttgttat-gaaaaaaataat--------------------------------------atattcttattt-ggttaagctactctgaccagattgttct
s panTro4.chr12              31264199 176 + 134246214 caagcctgaaggcagaagtcccatgctaaggatggcggagtggaaggatttgtgtagcacggactctgatgca-tgtggggctattccctaccatggactgcccacctctaaacttcttgttattaaaaaaaataat--------------------------------------atattcttattt-gattaagctactctgaccagattcttct
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78463311 174 - 136387465 caaacctgaagacagaagtcccatgctaaggatggcagagtggaaggatttgagtagcagggactctgatgca-tgtggggctattccctgccatggactgcccacctctaaacttcttgttat-gaaaaatat-at--------------------------------------atattcttattt-ggttaagctactctgaccagattcttcc
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54673566 175 + 123690457 caaacctgaagacagaagtcccatgctaaggatggtggagtggaaggatttgagtagcagggactctgatgca-tgtggggctattccctaccatggactgcccacctctaaacttcttgttat-gaaaaaaataat--------------------------------------atattcttactt-ggttaagctactctgaccagattcttcc
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79567259 175 - 134985053 caaacctgaagacagaagtcccatactaaagatggtggagtggaaggatttgagtagcagggactcagatgca-tgtggagctactccccaccatggactgcccacttctaaacttcttgttat-gaaaaaaataat--------------------------------------atattcttattt-ggttaagccactctgaccagattcttcc
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80667047 175 - 137757926 caaacctgaagacagaagtcccatactaaagatggtggagtggaaggatttgagtagcagggactcagatgca-tgtggagctactccccacaatggactgcccacttctaaacttcttgttat-gaaaaaaataat--------------------------------------atattcttattt-ggttaagccactctgaccagattcttcc
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78612942 175 - 132286798 CAAACCTGAAGACAGAAGTCCCATGCTAAAGATGGTGGAGTGGAAGGATTTGAGTAGCAGGGACTCTGATGCA-TGTGGAGCTACTCCCCACCATGGACTGCCCACCTCTAAACTTCttgttat-gaaaaaaataat--------------------------------------atattcttattt-gGTTAAGCCACTCTGACCAGATTCTTCC
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74547981 175 - 128539186 caaacctgaagacagaagtcccatgctaaagatggtggagtggaaggatttgagtagcagggactcagatgca-tgtggagctactccccaccatggactgcccacctttaaacttcttgttat-gaaaaaaataat--------------------------------------atattcttattt-ggttaagccactctgaccatattcttcc
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77327171 175 - 124281992 taagcctgaagacagaaggcccatgctaaggatggtgaagtggaaggatttgagtaacagaaactctgatgca-tgcagggctactccccaccatggactacctacctctgaacttcttgttat-ggaaaaaataat--------------------------------------aaattcttattt-ggttaagccactctaaccagactttttt
i calJac3.chr9              C 0 I 288
s mm10.chr10                126812697 133 + 130694993 CAAGCCTGAGGAGA-AGGCCCCATGTGGAGAATGGAGCTCTGGGAGG----------------CTGTGGTGCATTATGGGacttctc-----------------------agcctttcttttat-gatgaa-ataatgc------------------------------------aaattttaatttggggtgagacattgtggctaggat-----
i mm10.chr10                C 0 C 0
s canFam3.chr10              67264951 189 -  69331447 CAAGCCTGAAGAAA-ATGTCCCAGGATAAGGCTGGAAGAAGAGAACTA------TAGAAGGAGCTGAGATGCT------------TCTCAGCCATGGACTGCCCACCCGTAGGCTTCTTATTAT-AAGAaaaataaaataaaataataaaataaaacaaaacaaagtaaaataaaataaaCTTACTT-GACAAAGGTACTGTGGTCAGAT------
i canFam3.chr10             C 0 C 0

a score=757143.000000
s hg38.chr12_GL383550v2_alt     27748 198 +    169178 atttttctattacttacagccaaatgcattcctacttgatacaTTGCTC-ACTTTTTTCTCATTTAATTTTGATGAGACTGGGCTGTTTTCACATCCAAACGGCCAAAGCTCAGAGTTGTACTTTTAGACTTCTTGACTTTTTAATTTTTAACTGGAAATACCTCCCAATATTTGACCTACAAGATGAAAGCCACTTCA
s panTro4.chr12              31264375 198 + 134246214 atttttctattacttacagccaaatgcattcctacttgatacaTTGCTC-ACTTTTTTCTCATTTAATTTTGATGAGACTGGGCTGTTTTCACATCCAAACGGCCAAAGCTCAGAGTTGTACTTTTAGACTTCTTGACTTTTTAATTTTTAACTGGAAATACCTCCCAATATTTGACCTACAAGATGAAAGCCACTTCA
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78463485 198 - 136387465 atttttctattacttacagccaaatgcactcctacttgatacaCTGCTC-ACTTTTTTCTCATTTAATTTTGATGAAACTGGGCTGTTTTCACATTCAAATGGCCAAAGCTCAGAGTTGTACTTTCAGACTTCTTGACCTTTTGATTTTTAACTGGAAATACCTCCCAGTATTTGACCTACAAGATGAAAGCCACTTCA
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54673741 198 + 123690457 atttttctattacttacagccaaatgcattcctacttgatacaTTGCTC-ACTTTTTTCTCATTTAATTTTGATGAGACTGGGCTGTTTTTACATCCAAATGGCCAAAGCTCAGAGTTGTACTTTAAGACTTCTTGACTTTTTAATTTTTAACTGGAAATACCTCCCAATATTTGACCTACAAGATGAAAGCCACTTCA
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79567434 196 - 134985053 atttttctattatttacagccaaatgcattcctacttgatacaTTGCTC-ACTTTTTTCTCATTTAATTTTGATGAGACTGTGCTGTTTTCACATCCAAATGGCCAAAGCTCAGAGTTGTACTTTCAGACTTCTTGACTTCTTAATTTTTAACTGG--ACACCTCCCAATGTTAGACCTACAAGATGAAAACCACTTCA
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80667222 198 - 137757926 atttttctattatttacagccaaatgcattcctacttgatacaTTGCTC-ACTTTTTTCTCATTTAATTTTGATGAGACTGGGCTGTTTTCACATCCAAATGGCCAAAGCTCAGAGTTGTACTTTCAGACTTCTTGACTTCTTAATTTTTAACTGGAAACACCTCCCAATGTTAGACCTACAAGATGAAAACCACTTCA
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78613117 198 - 132286798 ATTTTTCTACTATTTACAGCCAAATGCATTCCTACTTGATACATTGCtc-acttttttctcatttaattttgatgagaCTGGGCTGTTTTCACATCCAAATGGCCAAAGCTCAGAGTTGTACTTTCAGACTTCTTGACTTCTTAATTTTTAACTGGAAACACCTCCCAACATTAGACCTACAAGATGAAAACCACTCCA
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74548156 198 - 128539186 atttttctattatttacagccaaatgcattcctacttgatacaTTGCTC-ACCTTTTTCTCATTTAATGTTGATGAGACCGGGCTGTTTTCACATCCAAATGGCCAAAGCTCAGAGTTGTACTTTCAGACTTCTTGACTTCTTAATTTTTAACTGGAAACACCTCCCAATGTTAGACCTACAAGATGAAAACCACTTCA
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77327634 196 - 124281992 atttttctattacttgcagccaaatacattcctacttcatacaTTGCTC-ACTTTTTTCTCATTTAATTTTGATGAGACTGA--TGTTTTCACATCCAAATGGCCAGTACTCAGAGTTGTACTTTCAGACTTCTTGACTTTGTAATTTTTAAATGGAAACACCTTCCGATATTTGTCTTACAAGATAAAAGCCACTTCA
i calJac3.chr9              I 288 C 0
s mm10.chr10                126812830 167 + 130694993 ---tttctactacttgtaaccaaatgccttcttactCAAT----------TTTTTTTTCCCATAAAATGTTGACCAGAGTGA--TG---------ACCGATAGTCAAAGCTCACAGG-----TTTCAGACATCTTGGCGTTTTAATTTTTAACTGGAAACACGTTCTAACAATTGA---ACAAGGTTAAAGCCCCTTCA
i mm10.chr10                C 0 I 744
s canFam3.chr10              67265140 191 -  69331447 ------CTATTACTTGTAGCTGAATGCATTCCTACATGATAC-TTGCTCTCCTTTTTTCCCATTAAATTTTGACTAGACTGGGCTATTTTCACA-CCTGATGGTCAAAGCTCAGGGCCTTCCTTTCACACTTCCTAGCTTTTTAATTTTTAGCTAGACTCACATTCCAATATTTGACCTATAAGACTAAAGCCCCTTCA
i canFam3.chr10             C 0 C 0

a score=123684.000000
s hg38.chr12_GL383550v2_alt     27946 58 +    169178 -----CGGATGATGAGGGATACTAATGATGAAAGATAA----GTATAACCATGATTACTTCAATAAT
s panTro4.chr12              31264573 58 + 134246214 -----CGGATGATGAGGGATACTAATGATGAAAGATAA----GTATAACCATGATTACTTCAATAAT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78463683 55 - 136387465 -----TG---GATGAGGGATACTAATGATGAAAGATAA----ATATAACCATGATTACTTCAATAAT
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54673939 55 + 123690457 -----TG---GATGAGGGATACTAATGATGAAAGATAA----ATATAACCATGATTACTTCAATAAT
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79567630 35 - 134985053 -----TG---GATGAGGGATGCTAATGATGGAAGATA------------------------AATAAT
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80667420 35 - 137757926 -----TG---GATGAGGGATGCTAATGATGGAAGATA------------------------AATAAT
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78613315 55 - 132286798 -----TG---GATGAGGGATGCTAATGATGGAAGATAA----ATATAACAATGAATAGTTCAATAAT
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74548354 55 - 128539186 -----TG---GATGAGGGATGCTAATGATGGAAGATAA----ATATAACAATGAATACTTCAATAAT
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77327830 55 - 124281992 -----TG---GATGAGGGATACTAATGATGAAAGATAA----ATATAACCATAAATATTTCAATAAT
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67265331 64 -  69331447 TCTTTTT---AATAAAGCATAATAATGATGGAATAAAGTACTATTTAGGCATGAACACTTCAGTGTT
i canFam3.chr10             C 0 C 0
e mm10.chr10                126812997 744 + 130694993 I

a score=1049856.000000
s hg38.chr12_GL383550v2_alt     28004 318 +    169178 ACACCCTGGCTTAAACcaaaggaacatgaagtaacacaaagagcaaacaatttcatctcagaatatctatgtgtgagtcctcctctcttcattgctcactaggtgtgtagccaggagcaagtcacctaaacccctccaagccacagtttcctcacccataaaacagag---ataataataatgtctatctcgtagagttgctgtcaacattaaatgaaa--aatcgtatataTGAATAA------GTACAGCTTTTGTGGGCCATAATACTTCTCTAAGAGAAGAGTCTTTTCTCCATATGAATAAATATCTGGCATTTTAAAATAATT
s panTro4.chr12              31264631 318 + 134246214 ACACCCTGGCTTAAACcaaaggaacatgaagtaacacaaagagcaaacaatttcatctcagaatatctatgtgtgagtcctcctctcttcattgctcactaggtgtgtagccaggagcaagtcacctaaacccctccaagccacagtttcctcacccataaaagagag---ataataataatgtctatctcgtagagttgctgtcaacattaaatgaaa--aatcgtatataTGAATAA------GTACAGCTTTTGTGGGCCATAATACTTCTCTAAGAGAAGAGTCTTTTCTCCATATGAATAAATATCTGGCATTTTAAAATAATT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78463738 317 - 136387465 ACACCCTGGTTTAAACcaaaggaacatgaagtaacacaaagagcaaacaatttcatctcagaatatctatgtgtgagtcctcctctcttcattgctcactaggtgtgtagccaggagcaagtcacctaaacccctccaagccacagtttcctcacccataaaagagag---ataataataatgtctatctcatagagttgctgtcaacattaaatgaaa--aagcatatatatgaaTAA------GTACAGCCTTTAGGGGCCATAATACTTCTCTAAGAGAAGAGTCTTTTCTCCATATGAATAAATATCTGGCATTTTAAAATAAT-
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54673994 317 + 123690457 ACACCCTGGCTTAAACCAAA-Gagcatgaagtaacacaaagagcaaacaatttcatctcagaatatctatgtgtgagtcctcctctcttcattgctcactaggtatgtagccaggagcaagtcacctaaacccctccaagccacagtttcctcatccatcaaagaaag---ataataataacatctatctcataaagttgctgtcatcattaaatggaa--aagcatatatatgaaTAA------GTACAGCCTTTGTGGGCCATAATACTTCTCTAAGAGAAGAGTCTTTTCTCCATATGAATAAATATCTGGCATTTTAAAATAATT
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79567665 318 - 134985053 ACACCGTGGCTTAAACcaaagaaatatgaagtaacaaaaagaccaaacaatttcatctcagaatatctatgtgtgagtcctcctctcttcattgctcactaggtgtgtagccaggaacaagtcacctaaacccctccaagccacaatttcctcatccataaaagagag---ataataataatgtctatctcatagagttgccatcaacattaaatgaaa--aagcatatatgtgaaTAA------GTATAGCCTTTATAGGCCATAACACTTCTCTAAGAGAAGAGTCTTTTCTCCATATGAATAAATTTCTGGTATTTTAAAATAATT
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80667455 318 - 137757926 ACACCGTGGCTTAAACcaaagaaacatgaagtaacaaaaagaccaaacaatttcatctcagaatatctatgtgtgagtcctcctctcttcattgctcactaggtgtgtagccaggaacaagtcacctaaacccctccaagccacaatttcctcatccataaaagagag---ataataataatgtctatctcatagagttgccatcaacattaaatgaaa--aagcatatatatgaaTAA------GTATAGCCTTTATAGGCCATAACACTTCTCTAAGAGAAGAGTCTTTTCTCCATATGAATAAATTTCTGGTATTTTAAAATAATT
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78613370 317 - 132286798 ACACCGTGGCTTAAACCAAAGGAACATGAAGTAACAAAAAGACCAAACAATTTCATCTCAGAATATCTATGTGTGAGTCCTCCTCTCTTCATTGCTCACTAGGTGTGTAGCCAGGAACAAGTCACCTAAACCCCTCCAAGCCACAATTTCCTC-TCCATAAAAGagag---ataataataatgtctATCTCATAGAGTTGCCATcaacattaaatgaaa--aagcatATATATGAATAA------GTATAGCCTTTATAGGCCATAACACTTCTCTAAGAGAAGAGTCTTTTCTCCATATGAATAAATttctggtattttaaaataatt
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74548409 318 - 128539186 ACACCGTGGCTTAAACcaaaggaacatgaagtaacaaaaagaccaaacaatttcatctcagaatatctatgtgtgagtcctcctctcttcattgctcactaggtgtgtagccaggaacaagtcacctaaacccctccaagctacaatttcctcatccataaaagagag---ataataataatgtctatctcatagagttgccatcaacattaaatgaaa--aagcatatatatgaataa------gtatagcctttatagaccataaTACTTCTCTAAGAGAAGAGTTTTTTCTCCATATGAATAAATTTCTGGTATTTTAAAATAATT
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77327885 309 - 124281992 ACACC-TGGCTT-AACcaaaggaacgtaaagtaacaaaaagaacaaatacttttatctcagaagagctagatatgaatcctcctctcttcattcctcactaggtgtgtagccaggatcaagtcacctaaacccctccaagctacagtttcctcatccataaaagagagataataataataatgtctagctcacagagttgctgtcaacatt-aatgaaa--aagc----atatggttaa------gtatagtcattgtgggacataataCTTCTCC-----AAGAGTCTTTTCTCCATATGGATAAATATGCAGCATTTTTAAATAATT
i calJac3.chr9              C 0 I 587
s mm10.chr10                126813741 216 + 130694993 ATATTCTGGCTT-AAGCAAAGAGACACAAAG-----GGGGTGGTAAATAATTTCAGCTCAGAAAAGCcgag---------tcctgtcttcagagcttcctagctgtgcgtccatgcggaaataacctaggc----ctaagctttagtttcttt------------------ataaacagactctctg-ctcagagg---actgttaacataaaatgaaatcacacgtgcatactagtga------ctac---------tgactataacaagt---------------------------------------------------------
i mm10.chr10                I 744 C 0
s canFam3.chr10              67265395 310 -  69331447 ACACC-CGACTTAAACCAAGGGAACATGAAGGCACCAAAACAATAAATAATTTCGTCTCAG---ATctaggtttgag---tcccttcttcatcacctactggttgtagagccatgagcaagtctcccacacctctccaggttttagtttcttt----ataaattagag---acaatagtaatgtctacttcatagggttgctattggtattcagtgaaa--aaacatataTATAAATAATAATAGGTATTATTATTATTGGCCAAACTAATTATCTAAGAGAAGAGTCTTTTTTGCATATAAATAAAAAT---GCATTTTTAGCTAGTT
i canFam3.chr10             C 0 C 0

a score=156322.000000
s hg38.chr12_GL383550v2_alt     28322 38 +    169178 TCTTTTCTAAATATATTTCCTATAATTTTGGTAACAGC
s panTro4.chr12              31264949 38 + 134246214 TCTTTTCTAAATATATTTCCTATAATTTTGGTAACAGC
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78464055 36 - 136387465 --TTTTCTAAATACATTTCCTATAATTTTGGTAACAGC
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54674311 38 + 123690457 TCTTTTCTAAATATATTTCCTATAATTTTGGTAACAGC
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79567983 38 - 134985053 TCTTTTCTAAATATATTTCCTATAATTTTGGCAACAGC
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80667773 38 - 137757926 TCTTTTCTAAATATATTTCCTATAATTTTGGAAACAGC
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78613687 38 - 132286798 tattttctaaatatatttcctATAATTTTGGTAACAGC
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74548727 38 - 128539186 TCTTTTCTAAATATATTTCCTATAATTTTGGTAACAGC
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77328781 38 - 124281992 TCTTTTCTAAATATATTTCCTATAATTTTAATAACAGC
i calJac3.chr9              I 587 C 0
s mm10.chr10                126813957 38 + 130694993 acctatatgaatgtaTTTTCTACAGTTTTGGTAATAGC
i mm10.chr10                C 0 C 0
s canFam3.chr10              67265705 38 -  69331447 TCTTTTCTGAATGTGTATCCTCTGACTTTGGTAAGAGC
i canFam3.chr10             C 0 C 0

a score=758659.000000
s hg38.chr12_GL383550v2_alt     28360 233 +    169178 CTCtgtcttagtccatgtagattactatcacaaaataccacagactggatagcttataaacaacgtttacttctcatagttctgaaggctgggaagtccaaaatcaaggcactagcagattaagtgtctggtgagggctgtcttcttgctgtaaactgacatggtagaaaggggcaagacaggtatttggggcctcttttataaaggcactaatgccattcatgagggcttca
s panTro4.chr12              31264987 230 + 134246214 CTCtgtcttagtccatgtagattactatcacaaaataccatagactggatagcttataaacaacgtttacttctcatagttctgaaggctgggaagtccaaaatcaaggcactagcagattaagtgtctggtgagggctgtctt---gctgtaaactgacgtggtagaaaggggcaagacaggtatttggggcctcttttataaaggcactaatgccattcatgagggcttca
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78464091 233 - 136387465 CTCtgtcttagtccatgtacattactatcacaaaataccatagactggatagcttataaacaacgtttacttctcatagttctgaaggctgcgaagtccaaaatcaaggcactagcagattcagtgtctggtgaaggctgtctccttgctgtaaactgacatggtagaaacgggcaagacaggtatttggggcctcttttatacaggcactaatgccattcatgagggcttca
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54674349 233 + 123690457 CTCtgtcttagtccatgtagattattatcacaaaataccatagactggatagcttataaacaacatttacttctcatagttctgaaagctgggaagtccaaaatcaaggcactagcagattaagtgtctggtgagggctgtcttcttgctgtaaactgacatggtagaaaggggaaagacaagtatttgaggcctcttttataaaggcactaatgccattcatgagggcttca
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79568021 233 - 134985053 CTCtgtcttagtccatggagattgctatcacaaaataccatagactggagagcttataaacgacgtttacttctcatagttctgaagactgggaagtccaaaatcaaggcactagcagattcagtatctggtaagggctgtcttcttgctgtaaactgacatgttagaaaggggcaagagaggtctttggggcctcttttataaaggcactaacaccattcaagagggcttca
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80667811 233 - 137757926 CTCtgtcttagtccatggagattgctatcacaaaataccatagactggagagcttataaacgacgtttacttctcatagttctgaagactgggaagtccaaaatcaaggcactagcagattcagtatctggtaagggctgtcttcttgctgtaaactgacatgttagaaaggggcaagacaggtctttggggcctcttttataaaggcactaacaccattcaagagggcttca
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78613725 233 - 132286798 CTCTGTCTTAGTCCATGGAGATTGCtatcacaaaataccatagactggagaGCTTATAAACAACGTTTacttctcatagttctgaagactgggaagtccaaactCAAGGCACTagcagattcagtatctggtaAGGGCTGTCTTCTTGCTGTAAATTGACATGTTAGAAAGGGGCAAGACAGGTCtttggggcctcttttataaaggcactaacaCCATTCAAGAGGGCTTCA
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74548765 233 - 128539186 CTCtgtcttagtccatggagattgctatcacaaaataccatagactggagagcttataaacaacgtttacttctcatagttctgaagactgggaagtccaaaatcaaggcactagcagattcagtatctggtaagggctgtcttcttgctgtaaactgacatgttagaaagggacaagacaggtctttggggcctcttttataaaggcactaacgccattcatgagggcttca
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77328819 232 - 124281992 CTCtgtcttagtccatgtagattactatcacgaaataccatagactggacaggttataaacaatgtttacttctgatagttctggaggctaggaagtccaaaatcaaggcactaacagattcagtgtctggtgagagctctcttcttgctataaactgacatggtagaaaggggcaagacaggtctctgcggcctc-tttataaaggcactaacaccattcatgatgtcttca
i calJac3.chr9              C 0 C 0
s mm10.chr10                126813995 205 + 130694993 Ctctgttc----------aggttgctgtgacaaaataccataagctaagtagcttataaacaatgcaggtttgtc-----tctgaagactgagaagtctacatttaaggccccggaagattcaggacttggtgtaggcgatttcctcccttt--ctttagatggtagacaggg------cagctttctggggtcct-----taaaaaaactaatcctatccatgaaggctccg
i mm10.chr10                C 0 I 514
e canFam3.chr10              67265743   0 -  69331447 C

a score=332330.000000
s hg38.chr12_GL383550v2_alt     28593 110 +    169178 acttcatgaccaaatcatctcccaaagaccccacctaataccatcacattggtgattaggttttcaacttatgaattttgggtggacatatacattcagaccatagcaTT
s panTro4.chr12              31265217 110 + 134246214 acttcatgaccaaatcatctcccaaagaccccacctaataccatcacattggtgattaggttttcaacttatgaattttgggtggacatatacattcagaccatagcaTT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78464324 110 - 136387465 acttcatgaccaaatcgtctcccaaagaccccacctaataccatcccattggtgattaggttttcaacttatgaattttgggtggacatatacattcagaccatagcaTT
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54674582 110 + 123690457 acttcatgacaaaataatctcccaaagaccccacctaataccatcacattggtgattaggttttcaacttatgaattacgggtggacatatacattcagaccatagcaTT
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79568254 110 - 134985053 acctcatgatcaaatcatctccagaagaccccacctaataccatcacattggtgattaggttttcaacttataaattttgggtggacatatacattcagaccatagcaTT
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80668044 110 - 137757926 acctcatgatcaaatcatctccagaagaccccacctaataccatcacattggtgattaggttttcaacttataaattttgggtggacatatacattcagaccatagcaTT
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78613958 110 - 132286798 ACCTCATGATCAAATCATCTCCAGAAGACCccacctaataccatcacattggtgattaggttttcAACTTATAAATTTTGGGTGGACGTatacattcagaccataacatt
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74548998 110 - 128539186 acctcatgatcaaatcatctccagaagaccccaactaataccatcacattggtgattaggttttcaacttataaatcttgggtggacatatacatttgtaccatagcaTT
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77329051 110 - 124281992 acctcatgatcaaatcatcttccaaagaccccacctaatagcaccacattggtgattatattttcaacttatgaattttgggaggacataaacattcagaccatagcaTT
i calJac3.chr9              C 0 C 0
e mm10.chr10                126814200 514 + 130694993 I
e canFam3.chr10              67265743   0 -  69331447 C

a score=282399.000000
s hg38.chr12_GL383550v2_alt     28703 83 +    169178 CTCCTGACTGTTTTCAAGC--AAGATCAGGTAAAGGCACTAGAAGTTACCTTTTTTGTGGATGCTTAAG-------AAAGGTGA--CTGGAGAG
s panTro4.chr12              31265327 83 + 134246214 CTCCTGACTGTTTTCAAGC--AAGATCAGGTAAAGGCACTAGAAGTTACCTTTTTTGTGGACGCTTAAG-------AAAGGTGA--CTGGAGAG
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78464434 81 - 136387465 CTCCTGAC--TTTTAAAGC--AAGATCAGGTAAAGGTACTAGAAGTTACCTTTCTTGTGGAAGCTTAAG-------AAAGGTAA--CAAGAGAG
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54674692 81 + 123690457 CTCCTGAC--TTTTCAAGC--AAGATCAGGTAAAGGCACTAGAAGTTACCTTTCTCGTGGAAGCTTAAG-------AAAGGTGG--CTGGAGAG
i nomLeu3.chr11             C 0 I 4206
s rheMac3.chr11              79568364 83 - 134985053 CTCCTGACTGTTTTCAAGC--AAGATCAGGTAAAGGCACTAAAAGTCACCTTTCTTGTGGAAGCTTAAG-------AAAGGTGA--CTGGAGAG
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80668154 83 - 137757926 CTCCTGACTGTTTTCAAGC--AAGATCAGGTAAAGGCACTAGAAGTCACCTTTCTTGTGGAAGCTTAAG-------AAAGGTGA--CTGGAGAG
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78614068 83 - 132286798 TTCCTGACTGTTTTCAAGC--AAGATCAGGTAAAGGCACTAGAAGTTACCTTTCTTGTGGAAGCTTAAG-------AAAGGTGA--CTGGAGAA
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74549108 83 - 128539186 TTCCTGACTGTTTTCAAGC--AAGATCAGGTAAAGGCACTAGAAGTTACCTTTCTTGTGGAAGCTTAAG-------AAAGGTGA--CTGGAGAG
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77329161 83 - 124281992 CTCCTGACTGTTTTCAAGC--AATATCAGGTAAAGGCACTAAAAGTTACCTTTCTTGTGGAAGCTCAAG-------ACAGGTTA--CTGGAGAG
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67265743 94 -  69331447 TTTCTAATCATTTCCAGGCAAAAGATCAGATAAAGTCACTAGAAGCTTCCTTCCTTGTGGAAGCTCAAGTCTGACTACAGGTGGACCTGGAGAG
i canFam3.chr10             C 0 C 0
e mm10.chr10                126814200 514 + 130694993 I

a score=318519.000000
s hg38.chr12_GL383550v2_alt     28786 121 +    169178 -GCCCCAAAA--ATTCATCTTGTCCTTAATTGGCTCTAGGGATGCATTGATAAGGCAGGCCCACACTAGTGAAAAACAAAAGCACAGATAACTCAGTCCCTGCCCTACCTACCAGGTCTGACCT
s panTro4.chr12              31265410 121 + 134246214 -GCCCCAAAA--ATTCATCTTGTCCTTAATTGGCTCTAGGGATGCATTGATAAGGCAGGCCCACACTAGTGAAAAACAAAAGCACAGATAACTCAGTCCCTGCCCTACCTACCAGGTCTGACCT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78464515 121 - 136387465 -GCCCCAGAA--ATTCATCTTGTCCTTAATTGGCTCTAGGGATGCATTGATAAGGCAGGCCCACACTAGTGAAGAACAAAAGCACAGATAACTCAGTCCCTGCCCTACCTACCAGGTCTGACCT
i ponAbe2.chr12             C 0 C 0
s rheMac3.chr11              79568447 121 - 134985053 -GCCCCAAAA--ATTCATCTTGTCCTTAATTAACTCTAGGGATGCATTGATAAGGCAGGCCCACACTAGTGAAGCACAAAAGCACAGATAACCCAGTCCCCACCCTACCTACCAGGTCTGACCT
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80668237 121 - 137757926 -GCCCCAAAA--ATTCATCTTGTCCTTAATTAACTCTAGGGATGCATTGATAAGGCAGGCCCACACTAGTGAAGCACAAAAGCACAGATAACCCAGTCCCCACCCTACCTACCAGGTCTGACCT
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78614151 121 - 132286798 -GCCCCAAAA--ATTCATCTTGTCCTTAATTAGCTCTAGGGATGCATTGATAAGGCAGGCCCACACTAGTGAAGCACAAAAGCACAGATAACCCAGTCCCCGCCCTACCTACCAGGTCTGACCT
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74549191 121 - 128539186 -TCCCCAAAA--ATTCATCTTGTCCTTAATTAGCTCTAGGGATGCATTGATAAGGCAGGCCCACACTAGTGAAGCACAAAAGCACAGATAACCCAGTCCCCGCCCTACCTACCAGGTCTGACCT
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77329244 121 - 124281992 -GCCCCAAAA--ATTCATCTTGCCCTTAATTGGCTCTAGGGCTGCATTGATAAGGCAGGCCCACACTAGTAAAGCACAAAAGCACAGATAACTCAGTCCCCGCCCTATCTACCAGGCCTGACCT
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67265837 108 -  69331447 GGCCTCAGAAGGACTCACCTGGTCCCAGACT--------GGATGTATGGACCATACTGGCCCATACTGGCAAAGCACAAGACTGCAGAT------GTCACCACC--AACCTCCATGTACTATCA
i canFam3.chr10             C 0 C 0
e mm10.chr10                126814200 514 + 130694993 I
e nomLeu3.chr11              54674773 4206 + 123690457 I

a score=153143.000000
s hg38.chr12_GL383550v2_alt     28907 52 +    169178 ACAAAATC--AAACCTCCAAAACCTACTGAAACCAGAAAACTGGGAATTTT-TGG
s panTro4.chr12              31265531 52 + 134246214 ACAAAATC--AAACCTCCAAAACCTACTGAAACCAGAAAACTGGGAATTTT-TGG
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78464636 52 - 136387465 ACAAAATC--AAACCTCCAAAACCTACTGAAACCAGAAAACTGGGAAGTTT-TGG
i ponAbe2.chr12             C 0 C 0
s rheMac3.chr11              79568568 52 - 134985053 ACAAAATC--AAACATCCAAAACCTACTGAAACCAGAAAACTGGAAATTTT-TGG
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80668358 52 - 137757926 ACAAAATC--AAACATCCAAAACCTACTGAAACCAGAAAACTGGAAATTTT-TGG
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78614272 52 - 132286798 ACAAAATC--AAACATCCAAAACCTACTGAAACCAGAAAACTGGAAATTTT-TGG
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74549312 52 - 128539186 ACAAAATC--AAACATCCAAAACCTACTGAAACCAGAAAACTGGAAATTTT-TGG
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77329365 50 - 124281992 AAAAAATC--AGACATCCAAAACCAACTAAGACCAGAAAAC--AACATTTT-TGG
i calJac3.chr9              C 0 C 0
s mm10.chr10                126814714 55 + 130694993 ACAAAACTGGAAACCTTCCAAACCACCCCAAATGAGATGATTGGGATTTTTCTGG
i mm10.chr10                I 514 C 0
s canFam3.chr10              67265945 52 -  69331447 ACAAAAAT--AAGTCTCCAAAACCAGCTAACACCAGAAAACTGGAAATTTT-CAg
i canFam3.chr10             C 0 I 231
e nomLeu3.chr11              54674773 4206 + 123690457 I

a score=816044.000000
s hg38.chr12_GL383550v2_alt     28959 287 +    169178 -TGGACAGGCTTTGAATATTCA--TTAAGGGGA-ATTTGTTCACTTTGTATACTGTGTGCTTATCTATTCTTCTCTGTGGCTTCAATAGAGATCATCCCCTGGACTGTAT-----GAATGTATCCCATATTATTAT-----TTTCAGGAATCAGAACAAAAAAGGAAACAATATTTGTAAAAACTGGAAACTCATTTTTCTTCCCT----CCCCTCCTTTCGTTTTTCCACTTAATGAATAATT-AGTCATAAATATCCGGGAACTAATAAGACTTGGAAACAATTTGAGAGCTATACCTTATAAA
s panTro4.chr12              31265583 287 + 134246214 -TGGACAGGCTTTGAATATTCA--TTAAGGGGA-ATTTGTTCACTTTGTATACTGTGTGCTTATCTATTCTTCTCTGTGCCTTCAATAGAGATCATCCTCTGGACTGTAT-----GAATGTATCCCATATTATTAT-----TTTCAGGAATCAGAACAAAAAAGGAAACAATATTTGTAAAAACTGGAAACTCATTTTTCTTCCCT----CCCCTCCTTTCGTTTTTCCACTTAATGAATAATT-GGTCATAAATATCCAGGAACTAATAAGACTTGGAAACAATTTGAGAGCTATACCTTATAAA
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78464688 287 - 136387465 -TGGACAGGCTTTGAATATTCA--TTAAGGGGA-ATTTGTTCACTTTGTATACTGTGTGCTTATCCATTCTTCTCTGTGTCTTCAATAGAGATCATTCTCTGGACTGTAT-----GAATGTATCCCATATTATTAT-----TTTCAGGAATCAGAACAAAAAAGGAAACAATATTTGTAAAAACTGGAAACTCATTTGTCTTCCCT----CCCCTCCTTTCATTTTTCCACTTAATGAATAACT-GATCATAAATATCCGGGAACTAATAAGAGTTGGAAAGAATTTGAGAGCTATATCTTATAAA
i ponAbe2.chr12             C 0 C 0
s rheMac3.chr11              79568620 287 - 134985053 -TGGACAGGCTTTGAATATTCA--TTAAGGGGA-ATTTGTTCACTTTGTATACTGTGTACTCATCTATTCTTCTCTGTGCCTTCAATACAGATCATCCTCTGGACTGTGT-----GAATGTATCCCATATTATTAT-----TTTCAGGACTCAGAACAAAAAAGGAAACAATATTTATAAAAACTGGGAACTCATTTATCTTCCCT----CCCCTCCTTTCATTTTTCCACTTAATGAATAATT-GGTCATAAATATCCAGGAACTAATAAGACATGGAAAGAATTTGAGAGCTATATCTTATAAA
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80668410 287 - 137757926 -TGGACAGGCTTTGAATATTCA--TTAAGGGGA-ATTTGTTCACTTTGTATACTGTGTACTCATCTATTCTTCTCTGTGCCTTCAATACAGATCATCCTCTGGACTGTGT-----GAATGTATCCCATATTATTAT-----TTTCAGGACTCAGAACAAAAAAGGAAACAATATTTATAAAAACTGGGAACTCATTTATCTTCCCT----CCCCTCCTTTCATTTTTCCACTTAATGAATAATT-GGTCATAAATATCCAGGAACTAATAAGACATGGAAAGAATTTGAGAGCTATATCTTATAAA
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78614324 287 - 132286798 -TGAACAGGCTTTGAATATTCA--TTAAGGGGA-ATTTGTTCACTTTGTATACTGTGTACTCATCTATTCTTCTCTGTGCCTTCAATACAGATCATCCTCTGGACTGTGT-----GAATGTATcccatattattat-----tttcaggactcagaacaaaaaaggaaacaatatttataaaaactggGAACTCATTtatcttccct----cccctcctttcatttttccacttaatgaataatt-GGTCATAAATATCCAGGAACTAATAAGACATGGAAAAAATTTGAGAGCTATATCTTATAAA
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74549364 287 - 128539186 -TGGACAGGCTTTGAATATTCA--TTAAGGGGA-ATTTGTTCACTTTGTATACTGTGTACTCATCTATTCTTCTCTGTGCCTTCAATACAGATCATCCTCTGGACTGTGT-----GAATGTATCCCATATTATTAT-----TTTCAGGACTCAGAACAAAAAAGGAAACAATATTTATAAAAACTGGGAACTCATTTATCTTCCCT----CCCCTCCTTTCATTTTTCCACTTAATGAATAATT-GGTCATAAATATCCAGTAACTAATAAGACATGGAAAGAATTTGAGAGCTATATCTCATAAA
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77329415 288 - 124281992 -TGGGCAGACTTTGAATATTCA--TTAAGGGGA-ATTTGTTCACTTGGTATACTATGTGCTTATCTATTTTTCTCTGTGCCTTCAATAGAAATCATCCTCTGGACTGTAT-----GAATGTATCCCATATTATTAT-----TTTCAGGAAGCAGAACAAAAAAGAAAACAATATTTGTAAAAACTGCACACTCATTTGTCTTCCCT----TTCCTCCTTTCATTTTTCCACTTAATGAATATTGAGGTCATAAATATCAAGGAACTAATAATACTTTGAAAGAATTAGAGAGCTATATCTTATAAA
i calJac3.chr9              C 0 C 0
s mm10.chr10                126814769 294 + 130694993 -TGGGCAGCTGTTAAGTAGTCAACTAAAAGGAG-GTTTCTGCACTTTGT----TGTGAGTTTACCTGTCCATATCTGCACCATTCACTGAGACGA--CTCCAGAATGTTTGGTAGGGGTAAATCCCTTATCGTGATTTTTCTTTCAAAAAGCACA--GAAACAGTAAATGGGATTTCCAGAACCCAGGAACTTGGGTGTCTTTCCTACCCCCCCCCTTTTTATTTCCCCACAGGA-GAGTAATC-AGATATGTATAGCTAGGAACTAGGAAAACACGGGAAGAATTTGAGATCAGAATTCTCAGAA
i mm10.chr10                C 0 I 1
s canFam3.chr10              67266228 255 -  69331447 GTGAGGAAA-TTTGGATATTCA--TTAAGGGGATTTTTTTTTACTTTATATGCTGTGAATTTATCTATTCTTCTCTGTGTCTTAAATAGAAATCATCTTCTAG------------G------TCCTATATCATCATT----TTTCAGAAAGTATA--GAAAAAGAAAAACGTATTTGCAAAA------------TTTGTCTCCCCT----CTCCTCCCTTCATTGGTCCATT--ATGAATATTT-GGCCATAAATACCCAGAAACTAT---GATTTGGTAAGAATTTGAGA--TATGTCTTGTAAA
i canFam3.chr10             I 231 C 0
e nomLeu3.chr11              54674773 4206 + 123690457 I

a score=3521004.000000
s hg38.chr12_GL383550v2_alt     29246 927 +    169178  
s panTro4.chr12              31265870 927 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78464975 930 - 136387465  
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54678979 929 + 123690457  
i nomLeu3.chr11             I 4206 C 0
s rheMac3.chr11              79568907 943 - 134985053  
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80668697 941 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78614611 925 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74549651 940 - 128539186  
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77329703 941 - 124281992  
i calJac3.chr9              C 0 C 0
s mm10.chr10                126815064 831 + 130694993  
i mm10.chr10                I 1 I 89
s canFam3.chr10              67266483 836 -  69331447  
i canFam3.chr10             C 0 C 0

a score=120755.000000
s hg38.chr12_GL383550v2_alt     30173 50 +    169178 AGTGTCTCTCTCCAAAAACT-TCTCTTAATCCACTAATCCTGTGGTTTT---TC
s panTro4.chr12              31266797 50 + 134246214 AGTGTCTCTCTCCAAAAACT-TCTCTTAATCCACTAATCCTGTGGTTTT---TC
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78465905 44 - 136387465 AGGGTCTCTCTCCAAAAACT-TCTCT--------TAATCCTGTGGTTTTT-CTC
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54679908 44 + 123690457 AGTGTCTCTCTCCAAAAACT-TCTCT--------TAATCCTGTGGTTTTT-CTC
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79569850 49 - 134985053 ----TCTCTCTCCAAAAACT-TCTCTTAATCCACAAATCCTGTGGTTATTCCTC
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80669638 49 - 137757926 ----TCTCTCTCCAAAAACT-TCTCTTAATCCACAAATCCTGTGGTTATTCCTC
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78615536 49 - 132286798 ----TCTCTCTCCAAAAACT-TCTCTTAATCCACAAATCCTGTGGttattcctc
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74550591 53 - 128539186 AGTGTCTCTCTCCAAAAACT-TCTCTTAATCCACAAATCCTGTGGTTATTCCTC
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77330644 51 - 124281992 AGTGTCTCTCT-CAAAAACT-TCTCTTAACTCACTAATCCTGTGATTTTT-CTC
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67267319 51 -  69331447 AATGTCCTTCTCCCTTAACTCTCTCCTAACACACTGATCCTGCAGTTTTCG---
i canFam3.chr10             C 0 C 0
e mm10.chr10                126815895 89 + 130694993 I

a score=220653.000000
s hg38.chr12_GL383550v2_alt     30223 59 +    169178 -TCTTTCTTCCACCTCCAGC---------------------------AATCTGCTCTCCTCTC--GGGGGTAAGGATTCTTCTTCCTTA
s panTro4.chr12              31266847 81 + 134246214 -TCTTTCTTCCACCTCCAGCAATCTC-----TTCCCCTTATTACATAAATCTGCTCTCCTCTC--GGGGGTAAGGATTCTTCTTCCTTA
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78465949 82 - 136387465 -TCTTTCTTCCACCTCCAGCAATCTC-----TTCCCCTTATTACATAAATCTGCTCTCCTCTCA-AGGGGTAAGGATTCTTCTTCCTTA
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54679952 86 + 123690457 -TCTTTCTTCCACCTCCAGCAATCTCTAGAGTCGACCTGCAGGCATGCATCTGCTCTCCTCTTG-GGGGGTAAGGATTC-TCTTCCTTA
i nomLeu3.chr11             C 0 M 100
s rheMac3.chr11              79569899 83 - 134985053 -TCTTTCTTCCACCTCCAGCAGTCTC-----TTCACCTTATTACTTAAATCTGCTTTCCTCTCGAGGGGGTAAGGATTCTTCTTCCTTA
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80669687 83 - 137757926 -TCTTTCTTCCACCTCCAGCAGTCTC-----TTCACCTTATTACTTAAATCTGCTTTCCTCTCGAGGGGGTAAGGATTCTTCTTCCTTA
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78615585 83 - 132286798 -tctttcttccaccGCCAGCAGTCTC-----TTCCCCTTATTACATAAACCTGCTTTCCTCTCGAGGGGGTAAGGATTCTTCTTCCTTA
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74550644 83 - 128539186 -TCTTTCTTCCACCTCCAGCAGTCTC-----TTCCCCTTATTACATAAATCTACTTTCCTCTCGAGGAGGTAAGGATTCTTCTTCCTTA
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77330695 80 - 124281992 -TCTTTCATCCACCTCCAGCAATCTC-----TTTCCCTTATTACATAAGTCTGCTTTCCTCTCTTGGGAGTAAGGATTCTTTTTTA---
i calJac3.chr9              C 0 C 0
s mm10.chr10                126815984 74 + 130694993 -TCTGCCTTCCACCTCCAACATTCGC-----CCACTCTCCTC------ATCTACT-TCCTCTT--GGGAGCAGGAACCCCCATGTCTTT
i mm10.chr10                I 89 I 1
s canFam3.chr10              67267370 84 -  69331447 TCCTGTCTTCCGTCTCCAGGTCCCTT-----GTTCTGTTATTGCCTGAATCCACTTCCTTCTCTTGGGGACATGGATTCCTCTTTCCGG
i canFam3.chr10             C 0 C 0

a score=164699.000000
s hg38.chr12_GL383550v2_alt     30282 48 +    169178 GGCAAGAGGAAACAAAGAAGACAAATGCAGAATTCTCTTTGGCAGGCA
s panTro4.chr12              31266928 48 + 134246214 GGCAAGAGGAAACAAAGAAGACAAATGCAGAATTCTCTTTGGCAGGCA
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78466031 48 - 136387465 GGCAAGAGGAAACAAAGAAGACAAATGCAGAATTCTCTTTGGCAGGCA
i ponAbe2.chr12             C 0 C 0
s rheMac3.chr11              79569982 48 - 134985053 GGCAAGAGGAAACAAAGAAGACAAATGCAGAATTCTCTTTGACAGGCA
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80669770 48 - 137757926 GGCAAGAGGAAACAAAGAAGACAAATGCAGAATTCTCTTTGACAGGCA
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78615668 48 - 132286798 GGCAAGAGGAAACAAAGAAGACAAATGCAGAATTCTCTTTGACAGGCA
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74550727 48 - 128539186 GACAAGAGGAAACAAAGAAGACAAATGCAGAATTCTCTTTGACAGGCA
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77330775 46 - 124281992 GGCAAGAGGAAACAAAGAAGAC--ATACAGAATTCTCTTTGGCAGGCA
i calJac3.chr9              C 0 I 6760
s mm10.chr10                126816059 48 + 130694993 GGCGAAAGGAAGCCAAAGTGAATCGTGCAGAATCCCCTTTAACAGGCA
i mm10.chr10                I 1 C 0
s canFam3.chr10              67267454 48 -  69331447 AAAGAGAGGAAACAAAGCAGATGAATGCAGAATTCTCTTTGGCAAGCA
i canFam3.chr10             C 0 C 0
e nomLeu3.chr11              54680038 100 + 123690457 M

a score=7821.000000
s hg38.chr12_GL383550v2_alt     30330 2 +    169178 GG
s panTro4.chr12              31266976 2 + 134246214 GG
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78466079 2 - 136387465 GG
i ponAbe2.chr12             C 0 C 0
s rheMac3.chr11              79570030 2 - 134985053 GG
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80669818 2 - 137757926 GG
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78615716 2 - 132286798 GG
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74550775 2 - 128539186 GG
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77337581 2 - 124281992 GG
i calJac3.chr9              I 6760 C 0
s mm10.chr10                126816107 2 + 130694993 AG
i mm10.chr10                C 0 I 5727
s canFam3.chr10              67267502 2 -  69331447 GG
i canFam3.chr10             C 0 I 3147
e nomLeu3.chr11              54680038 100 + 123690457 M

a score=2548.000000
s hg38.chr12_GL383550v2_alt     30332 1 +    169178 T
s panTro4.chr12              31266978 1 + 134246214 T
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78466081 1 - 136387465 T
i ponAbe2.chr12             C 0 C 0
s rheMac3.chr11              79570032 1 - 134985053 T
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80669820 1 - 137757926 T
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78615718 1 - 132286798 T
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74550777 1 - 128539186 T
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77337583 1 - 124281992 T
i calJac3.chr9              C 0 C 0
e mm10.chr10                126816109 5727 + 130694993 I
e canFam3.chr10              67267504 3147 -  69331447 I
e nomLeu3.chr11              54680038 100 + 123690457 M

a score=293533.000000
s hg38.chr12_GL383550v2_alt     30333 106 +    169178 CCTCCAGCAGCCTTACCCACAGCTCAAATTT-TT-ATGCAGCCCCAAGTTTCCTCTTGTGGCCAGCAATACTAAAGGAAGGCAAGGAGTCCTTAGTTAATTGGTTCAT----
s panTro4.chr12              31266979 106 + 134246214 CCTCCAGCAGCCTTACCCACAGCTCAAATTT-TT-ATGCAGCCCCAAGTTTCCTCTTGTGGCCAGCAATACTAAAGGAAGGCAAGGAGTCCTTAGTTAATTGGTTCAT----
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78466082 106 - 136387465 CCTCCAGCAGCCTTACCCATAGCTCAAATTT-TT-ATGCAGCCCCAAGTTTCCTCTTATGACCAGCAATACTAAAGGAAGGCAAGGAGTCCTTTGTTAATTGGTTTAT----
i ponAbe2.chr12             C 0 C 0
s rheMac3.chr11              79570033 106 - 134985053 CCTCCAGCAGCCTTACCCACAGCTCAAATTT-TT-ATGCAGCCCCAAGTTTCCTCTCGTGACCAGCAAAACTAAAGGAAAGCAAGGAGTCCCTTGTTAATTGGTTTAC----
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80669821 106 - 137757926 CCTCCAGCAGCCTTACCCACAGCTCAAATTT-TT-ATGCAGCCCCAAGTTTCCTCTCGTGACCAGCAAAACTAAAGGAAAGCAAGGAGTCCCTTGTTAATTGGTTTAC----
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78615719 106 - 132286798 CCTCCAGCAGCCTTACCCACAGCTCAAATTT-TT-ATGCAGCCCCAAGTTTCCTCTCGTGACCAGCAAAACTAAAGGAAAGCAAGGAGTCCCTTGTTAATTGGTTTAC----
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74550778 106 - 128539186 CCTCCAGCAGCCTTACCCATAGCTCAAATTT-TT-ATGCAGCCCCAAGTTTCCTCTCGTGACCAGCAATACTAAAGGAAAGCAAGGAGTCCCTTGTTAATTGGTTTAC----
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77337584 107 - 124281992 CCTCCAGCAGCCCTACCCACAGCTCAAATTTCTT-ATGCAGCCCCAACTTTCCTCTTGTGATCAGCAAGACTAAAGGAAGGCAAGGAGTCCCTTGTTCATTGGTTTAT----
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67270651 111 -  69331447 CCTCCAGTGGCCTTACCTACAGTTCAAATTT-TTCATACTATCCCAGGGTTTCTCCCATGACCAATAAGACTAGGAGAAGGCAAAGAGTCCCTTGTTTTCTGGATAGCCCAG
i canFam3.chr10             I 3147 C 0
e mm10.chr10                126816109 5727 + 130694993 I
e nomLeu3.chr11              54680038 100 + 123690457 M

a score=2282160.000000
s hg38.chr12_GL383550v2_alt     30439 656 +    169178  
s panTro4.chr12              31267085 656 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78466188 657 - 136387465  
i ponAbe2.chr12             C 0 I 330
s nomLeu3.chr11              54680141 652 + 123690457  
i nomLeu3.chr11             M 100 C 0
s rheMac3.chr11              79570139 657 - 134985053  
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80669927 657 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78615825 657 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74550884 656 - 128539186  
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77337691 665 - 124281992  
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67270762 657 -  69331447  
i canFam3.chr10             C 0 C 0
e mm10.chr10                126816109 5727 + 130694993 I

a score=714579.000000
s hg38.chr12_GL383550v2_alt     31095 248 +    169178 GCACTGTGGATACCAAACCTACAAGAC---CTTCTCTCATCTGTTCTCTTGCATAGCTGCTGCTGAAGGCATTTCCCACAAGTGTGCTCTCCCTCAAAACACTTCTTCCTA-TCTTGCACATagaaaaaaagaaaaagagagagg----gggagagagagagaaaagaaaaaaaaaagtagatagataagaCATCCATACACTGAGAACATAAAAACCTGCGATTAGAATCTCTCTAGTCAAAAAGAAGTAATTTT
s panTro4.chr12              31267741 245 + 134246214 GCACTGTGGATACCAAACCTACAAGAC---CTTCTGTCATCTGTTCTCTTGCATAGCTGCTGCTGAAGGCATTTCCCAAAAGTGTGCTCTCCCTCAAAACACTTCTTCCTA-TCTTGCACATagaaaaaaagaaaaagagaga------gggagagagagagaAAAG-AAAAAAAAAGTAGATAGATAAGACATCCATACACTGAGAACATAAAAACCTGCGATTAGAATCTCTCTAGTCAAAAAGAAGTAATTTT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78467175 252 - 136387465 GCACTGTGGATACCAAACCTACAAGGC---CTTCTCTCATCTGTTCTCTTGACAGTCAGCTGCTGAAGGCATTTCCCACAAGTGTGCTCTCCCTCCAAACACCTCTTCCTA-TCTTGCACATagaaaaaaaaaaaaaaagagagggagagagagagagagaaaaaagaaaaaaaaaaGTAGATAGATAAGACATCCCTACACTGAGAACATAAAAACCTGTGATTAGAATCTCTCTAGTCAAAAAGAAGTAATTTT
i ponAbe2.chr12             I 330 C 0
s nomLeu3.chr11              54680793 245 + 123690457 GCACTGTGGATACCAAACCTACAAGGC---CTTCTCTCATCTGTTCTCTTGCACAGCTGCTGCTGAAGGCATTTCCCACAAGTGTGCTCTCCCTCAAAACACTTCTTCCTA-TCTTGCACATAGCAAAAAAAAAAAAAAGAGA------GGGAGAGAGAGAGAAAAG-GAAAAAAAAGTAGATAGATAAGACATCCATACACTGAGAACATAAAAACCTGTGATTAGAATCTCTCTAGTCAAAAAGAAGTAATGTT
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79570796 250 - 134985053 GCACTGTGGATGCCAAACCTACAAGGC---CTTCTCTCATCTGTCCTCTTGCATAGCTGCTGCTGAAGGCATTTCCCACAAGTGTCCTCTCCCACAAAACGCTTCTTCCTA-TCTTGCACATAGCaaaaaaaaaaaaaaaaaagagagagagagagagagagagaag--aaaaaaaaaTAGATAGATAAGACATCCATACACTGTGAACATAAAAACCTGTGATTAGAATCTCTCTAGTCAAAAAGAAGTAATTTT
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80670584 240 - 137757926 GCACTGTGGATGCCAAACCTACAAGGC---CTTCTCTCATCTGTCCTCTTGCATAGCTGCTGCTGAAGGCATTTCCCACAAGTGTCCTCTCCCACAAAACGCTTCTTCCTA-TCTTGCACATAGCaaaaaaaaaaaaaa-----------agagagagagagagaag-aaaaaaaaaaTAGATAGATAAGACATCCATACACTGTGAACATAAAAACCTGTGATTAGAATCTCTCTAGTCAAAAAGAAGTAATTTT
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78616482 243 - 132286798 GCACTGTGGATGCCAAACCTACAAGGC---CTTCTCTCATCTGTCCTCTTGCATAGCTGCTGCTGAAGGCATTTCCCACAAGTGTCCTCTCCCACAAAACGCTTCTTCCTA-TCTTgcacatagcaaaaaaaaaaaaaa--------aagagagagagagagagaag-aaaaaaaaaatagatagataagACATCCATACACTGTGAACATAAAAACCTGTGATTAGAATCTCTCTAGTCAAAAAGAAGTAATTTT
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74551540 240 - 128539186 GCACTGTGGATGCCAAACCTACAAGGC---CTTCTCTCATCTGTCCTCTTGCATAGCTGCTGCTGAAGGCATTTCCCACAAGTGTCCTCTCCCACAAAACGCTTCTTCCTA-TCTTGCACATAGCaaaaaaaaaaagag-----------agagagagagagagaag-aaaaaaaaattagatagataagaCATCCATACACTGTGAACATAAAAACCTGTGATTAGAATCTCTCTAGTCAAAAAGAAGTAATTTT
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77338356 210 - 124281992 GCACTGTGGATACCAAACCTACAAGG-----TTTTCTCATCTGTCCTCTTGCATAGCTGCTGCTGAAGGCATTTCCCACGAGTACCCTCTTCCCCAAAACTCTTCTTCCTA-CTTTGCACATAGCAAAAAAAAAAAA-------------------------------AAGAAAAAAGTATATAGATAATACATCCATATACTGAGAACATAAAAACCTGTGAT---------TCTAGTCAAAAAGAAGTAATTTT
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67271419 207 -  69331447 GTGCTATGGGTACCAAACCTACAAGCTCTGCTTCCCCCATATATCTTCCTGCAAGGCAGCTGTGGAAGATATTATCCACAGAC-TTCTCACCCTC-AACCTCTTTGTCCTACTCCTCCATGTAGT------------------------------GGGGGAAAGAGG---------------TAGAAAAAACATCCACACACTGACAGTGTAAAAA-TTATGACTAG-ATCTGTCCAATGACAAAGAAGTCAGTTT
i canFam3.chr10             C 0 I 206
e mm10.chr10                126816109 5727 + 130694993 I

a score=2166493.000000
s hg38.chr12_GL383550v2_alt     31343 630 +    169178  
s panTro4.chr12              31267986 630 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78467427 630 - 136387465  
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54681038 629 + 123690457  
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79571046 627 - 134985053  
i rheMac3.chr11             C 0 I 1
s macFas5.chr11              80670824 628 - 137757926  
i macFas5.chr11             C 0 I 1
s papAnu2.chr11              78616725 628 - 132286798  
i papAnu2.chr11             C 0 I 1
s chlSab2.chr11              74551780 628 - 128539186  
i chlSab2.chr11             C 0 I 313
s calJac3.chr9               77338566 621 - 124281992  
i calJac3.chr9              C 0 I 1
s canFam3.chr10              67271832 634 -  69331447  
i canFam3.chr10             I 206 C 0
e mm10.chr10                126816109 5727 + 130694993 I

a score=613530.000000
s hg38.chr12_GL383550v2_alt     31973 171 +    169178 GCCAATCTTTCTTTTAAGGTTTTGGTTTTATAAAATTGATTTTGAGTAAATCTGTGACAGGATGGTATAGAATATGGCATCCCTCTCCACTGAGATCTACTGCAAGATAGTTCAAGATACAGAGG-------GGAGGGAAAGGCCTATGTTTTACAACTGGCAGTAAACTTCCTCTTC
s panTro4.chr12              31268616 171 + 134246214 GCCAATCTTTCTTTTAAGGTTTTGGTTTTATAAAATTGATTTTGAGTAAATCTGTGACAGGATGGTATAGAATATGGCATCCCTCTCCACTGAGATCTACTGCAAGATAGTTCAAGATACAGAGG-------GGAGGGAAGGGCCTGTGTTTTACAACTGGCAGTAAACTTCCTCTTC
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78468057 167 - 136387465 GCCAA----TCTTTTAAGGTTTTGGTTTTATAAAATTGATTTTGAGTAAATCTGTGACAGGATGGTATAGAATATGGCATCCCTCTCCACTGAGATCTAATGTAAGATAGTTCAAGATATAGCGG-------GGAGGGAAGGGCCTATGTTTTacaactggcagcaaacttcctcttc
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54681667 171 + 123690457 GCCAATCTTTCTTTTAAGGTTTTGGTTTTATAAAATTGATTTTGAGTAAATCTGTGACAGGATGGTATAGAATATGGCATCCCTCTCCACTGAGATCTAATGTAAGATAGTTCAAGATACAGGGG-------GGAGGGAAGGGCCTATGTTTTACAACTGGCAGCAAACTTCCTCTTC
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79571674 171 - 134985053 GCCAATCTTTCTTTTAAGGTTTTGGTTTTATAAAATTGATTTTGAGTAAATCTGTGGCAGGATGGTATGGTATATGGCATCCCTCTCCACTGAGATCTAATGCAAGATAGTTCAAGATACAGGGG-------GGAGGGAAGGGCCTGTGTTTTACAACTGGCAGCAAACTTCCTCTTC
i rheMac3.chr11             I 1 C 0
s macFas5.chr11              80671453 171 - 137757926 GCCAATCTTTCTTTTAAGGTTTTGGTTTTATAAAATTGATTTTGAGTAAATCTGTGGCAGGATGGTATGGTATATGGCATCCCTCTCCACTGAGATCTAACGCAAGATAGTTCAAGATACAGGGG-------GGAGGGAAGGGCCTGTGTTTTACAACTGGCAGCAAACTTCCTCTTC
i macFas5.chr11             I 1 C 0
s papAnu2.chr11              78617354 171 - 132286798 GCCAATCTTTCTTTTAAGGTTTTGGTTTTATAAAATTGATTTTGAGTAAATCTGTGGCAGGATGGTATAGTATATGGCATCCCTCTCCACTGAGATCTAACGCAAGATAGTTCAAGATACAGGGG-------GGAGGGAAGGGCCTGTGTTTTACAACTGGCAGCAAACTTCCTCTTC
i papAnu2.chr11             I 1 C 0
s chlSab2.chr11              74552721 171 - 128539186 gccAATCTTTCTTTTAAGGTTTTGGTTTTATAAAATTGATTTTTAGTAAATCTGTGGCAGGATGGTATAGTATATGGCATCCCTCTCCACTGAGATCTAACACAAGATAGTTCAAGATACAGCGG-------GGAGGGAAGGGCCTGTTTTTTACAACTGGCAGCAAACTTCCTCTTC
i chlSab2.chr11             I 313 C 0
s calJac3.chr9               77339188 176 - 124281992 GCCAATCTTTCTTTTAAGGTTTTGGTTTCATAAAATTGATTTTGAGTAAATCTGTGACAGGATAGTAGAGAATATGGCATCCCTCTCCACTGAGATCCAATATAAGACAGTTCAAGACACAGCGG--GAGGAGGAGAGAAGGGCCTATGTTTTACAACTGGCAGCAAACTTCCTCTTC
i calJac3.chr9              I 1 I 310
s canFam3.chr10              67272466 173 -  69331447 GCCAATCTTTCTTTTAAGATTTTGGTTTCATAAAACTGATTTAGACTAAATCCATGACAGGATGACAGAGAATATGGTG-CCCTCCCCAGTTAGAGCTCATGTA----AGTTCAAGATACAGAGGTGGGAGAGGAGGCAGGAGGCTCTATTTTTTAACTGGCAGCAAACTTCCCCTTC
i canFam3.chr10             C 0 C 0
e mm10.chr10                126816109 5727 + 130694993 I

a score=1141008.000000
s hg38.chr12_GL383550v2_alt     32144 402 +    169178 AAGAGAAAGATGTCTTTTCTTTGATGGC--CTTTGGTTATAAAAATGAAAGCATGCAATAAC-ATGATtgtactagtctgttttcacactgctgataaagacatacccaagactgggcaaattacaaaagaaagaggtttaattggatttacagttccacgcggctgaggaagcctcacaatcatggtggaaggcaaggaggagcaagtcatcttttacatggatggcagcaggcaaagaaagacagagcttgtgcagaggaactcctctttttaaaaccatcagttctcgtgagactt----actatcacgacaacagtatgggaaagatttgcccctatgattcaattagctccctctaggcccctcccacaacatgtgggaattcaagatgagattttggtgggaa
s panTro4.chr12              31268787 405 + 134246214 -AGAGAAAGATGTCTTTTCTTTGACGGC--CTTTGGTTATAAAAACGAAAGCATGCAATAAC-ATGATtgtactagtctgttttcacactgccgataaagacatatccaagactgggcaatttacaaaagaaagaggtttaattggatttacagttccacgtggctgaggaagcctcacaatcatggtggaaggcaaggaggagcaagtcatcttttacatggatggcagcaggcaaagaaagagagagcctgtgcagaggaactcctctttttaaaaccatcagatctcgtgagacttactcactatcacaacaacagtatgggaaagacttgcccctatggttcagttacctccctctaggcccctcccacaacatgtgggaattcaagatgagattttggtgggaa
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78468224 406 - 136387465 aggagaaagatgtcttttctttgatggc--ctttggttataaaaatgaaagcatgcaataac-atgattgtattagtctgttttcacactgctgataaagacacacccaagactgggcaatttacaaaagaaagagatttaattggatttacagttccacacagctgaggaagcctcacaatcatggtggaaggcaaggacgagcaagtcatcttttacatggatggcagcaggcaaagaaagagagagcttgtgcagaggaactcctctttttaaaaccatcagatctcgtgagacttactcactatcatgagaacagtatgggaaagacttgcccctatgattcaattacctctcactaggcccctcccacaacacgtgggaattcaagatgagattttggtgggaa
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54681838 402 + 123690457 AGGAGAAAGTTGTCTTTTCTCTGATGGC--CTATGGTTACAAAAATGAAAGCATGCAATAAC-ATGATtgtattagtctgttttcacactgctgataaagacatacccaagactgggcaatttacaaaagaaagaggtttaattggatttacagttccacacggctgaggaagcctcacaatcacggtagaaggcaaggaggagcaagtcatcttttacatggatggcagcaggc----aaagagagagcttgtgcaggggaactcctctttttaaaaccattggatctcgtgagacttactcactatcacgagaacagaatgggaaagacttgcacccatgattcaattacctcccactaggcccctcccacaacacatgggaattcaagatgagactttggtgggaa
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79571845 402 - 134985053 AGGAGAAAG-TCTCTTTTCTTTGATGGC--CTTTGGTTATAAAAATGAAAGCATGCAATAACAATGATtgtattagtctgttttcacactgctgataaagacaaacccaagactgggcaatttacaaaagaaagaggtttaattggatttacagttccacgtggctggggaagcctcacaaccatggtggaaggcagggaggggcaagtcatctcttacatggatggcagcaagcaaagaaagagcaagcttgtgcagagcaactcccctttttaaaaccatcagatctcatgagactt----actgtcaggagaacagcatgggaaagactttcccccttgattcaattacctctcactaggcccctcctacaacacgtgggaattcaagatgagattttggtgggaa
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80671624 402 - 137757926 AGGAGAAAG-TCTCTTTTCTTTGATGGC--CTTTGGTTATAAAAATGAAAGCATGCAATAACAATGATtgtattagtctgttttcacactgctgataaagacaaacccaagactgggcaatttacaaaagaaagaggtttaattggatttacagttccacgtggctggggaagcctcacaaccatggtggaaggcaaggaggggcaagtcatctcttacatggatggcagcaagcaaagaaagagcaagcttgtgcagagcaactcccctttttaaaaccatcagatctcatgagactt----actgtcaggagaacagcatgggaaagactttcccccttgattcaattacctctcactaggcccctcctacaacacgtgggaattcaagatgagattttggtgggaa
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78617525 402 - 132286798 AGGAGAAAG-TCTCTTTTCTTTGATGGC--CTTtggttataaaaatgaaagcatgcAATAACAATGattgtatcagtctgttttcacactgctgataaagacaaacccaagactgggcaatttacaaaagaaagaggtttaattggatttacagttccacgtggctggggaagcctcacaaccatggtggaaggcaaggaggagcaagtcatctcttacatggatggcagcaagcaaagaaAGAGCAAGCTTGTGCAGAgcaactcccctttttaaaaccatcagatctcatgagactt----actgtcaggagaacagcatgggaaagactttcccccttgattcaattacctctcactaggcccctcccacaacacgtgggaattcaagatgagattttggtgggaa
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74552892 402 - 128539186 AGGAGAAAG-TCTCTTTTCTTTGATGGC--CTTTGGTTATAAAAATGAAAGCACGCAATAACAATGATtgtattagtctgttttcacactgttgataaagacaaacccaagattgggcaatttacaaaagaaagaggtttaattggatttacagttccacatggctggggaagcctcacaaccatggtggaaggcaaggaggagcaagtcatctcttacatggatggcagcaagcaaagaaagagcaagcttgtgcagagcaattcccctttttaaaaccatcagatctcatgagactt----actgtcaggagaacagcatgggaaagactttcccccttgattcaattacctctcactaggcccctcccacaacacgtgggaattcaagatgagattttggtgggaa
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77339674 403 - 124281992 aaaagaaaGTTGTCTTTTCTTTGATGGC--CTTTGGTTATAAAAATGAAAACATACAATAAC-ATGATTCtattagtcggttttcacactgctgataaagacatatctgagactgggcaattcac-aaagaaaaaggtttaattggatttatagttctacatggctggagaagcctcacaatcatggtggaaggcaaagaggaaccagtcatgtcttacatgcatagcagtaggcaaagagagag--agcttgtgaagaggaactcctctttttaaaaccgtcagatctcgtgagacttattcactgtcacgagaacagcatgggaaagacccaccgccataattcaattacctcccactaggcccctctcacaacatgtgggaattcaagaagagattttggtgggga
i calJac3.chr9              I 310 I 283
s canFam3.chr10              67272639 161 -  69331447 AGAAGAAAAATGGCTTTTCTCAGATAGCCTCTTTGGTTATGAAGGGGAATGCACACATTAGC-ATG--------------------------------------ACCAAGGACATGACAAT--------GAGAGAG------CTGAATT----GTTCTACGTG---------------------------------------------------TTTGTATGG----------------AAAGAG-----------------------CTTTGT-----------------------------ATTGCCAGGAGGGCAG-ATTAGAGAGA-----------------------------------------------------------------------GGTGAGAG
i canFam3.chr10             C 0 C 0
e mm10.chr10                126816109 5727 + 130694993 I

a score=1948900.000000
s hg38.chr12_GL383550v2_alt     32546 601 +    169178  
s panTro4.chr12              31269192 589 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78468630 601 - 136387465  
i ponAbe2.chr12             C 0 I 397
s nomLeu3.chr11              54682240 600 + 123690457  
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79572247 598 - 134985053  
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80672026 598 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78617927 595 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74553294 602 - 128539186  
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77340360 579 - 124281992  
i calJac3.chr9              I 283 C 0
s canFam3.chr10              67272800 450 -  69331447  
i canFam3.chr10             C 0 C 0
e mm10.chr10                126816109 5727 + 130694993 I

a score=1419610.000000
s hg38.chr12_GL383550v2_alt     33147 521 +    169178  
s panTro4.chr12              31269781 521 + 134246214  
i panTro4.chr12             C 0 C 0
s nomLeu3.chr11              54682840 521 + 123690457  
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79572845 520 - 134985053  
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80672624 520 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78618522 521 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74553896 521 - 128539186  
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77340939 506 - 124281992  
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67273250 526 -  69331447  
i canFam3.chr10             C 0 C 0
e mm10.chr10                126816109 5727 + 130694993 I
e ponAbe2.chr12              78469231 397 - 136387465 I

a score=1574062.000000
s hg38.chr12_GL383550v2_alt     33668 463 +    169178 gttccttcccagccagtatggaaact-aaatttttgaaaggctatttcagcattctatc-agaccagctacttcatggtaac-agggaacatggtaatatcagtagattccatcagcatgagtcca-----------caattgctgttaagtaagttccttggtcagaagcagtgttataagaataccttgatgtgaatcatactatgtaagtccacagatggtgattttgacaaaagccttgagggcaaggaaaacaaatccatatttagagtaaatgtctctttcagtgagaacaaagcactgcctcttctaagatggatgtggtccattgcaaccaacctaccagcagg----tatttcagcctgctggggaatggtaccatgtcaggggctcaaagttgtactctgctgttggcagattggacattcaacagtgactatagacagatcagccatagtgagtggaagtccatgttgct
s panTro4.chr12              31270302 463 + 134246214 gttccttcccagccggtatggaaact-aaatttttgaaaggctatttcagcattctatc-agaccagctacttcatggtaac-agggaacatggtaatatcagtagattccatcagcatgagtcca-----------caattgctgttaagtaagttccttggtcagaagtagtgttataagaataccttgatgtgaatcatactatgtaagtccacagatggtgattttgacaaaagccttgagggcaaggaaaacaaatccatatttaaagtaaatgtctctttcagtgagaacaaagcaccgcctcttctaagatggatgtggtccattgcaaccaacctaccagcagg----tatttcagcctgctggggaatggtaccatgtcaggggctcaaagttgtactctgctgttggcaggttgggcattcaacagtgactatagacagatcagctgtagtgagtggaagtccatgttgct
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78469628 463 - 136387465 gttccttcccagctggcatggaaact-aaatttttgaaaggctatatcagcattatatc-agaccagctacttcatggtaat-ggggaacatggtaatatcagtagattccatcagcatgagtcca-----------caattgctgttaagtaagttccttggtcagaagcagtgttataagaataccttgatgtgaatcatactatgtaagtccacagatggtgattttgacaaaagccttgagggcaaggaaaacaaatccatatttagagtaaatgtctctttcagtgagaacaaagcactgcctcttctaagatggatgtggtccattgcaaccaacctaccagcagg----tatttcagcctgctggggaatggtaccacgtcaggggctcaaagttgtactctgctgttggcaggttgggcattcaacagtgactatagacagatcagccttagtgagtggaagtccatgttgct
i ponAbe2.chr12             I 397 C 0
s nomLeu3.chr11              54683361 467 + 123690457 gttccttcccagctggcacggaaact-acatttttgaaagcctatttcagcattctatc-agaccagctacttcatggtaat-ggggaacatggtaatatcagtagattccatcagcatgagtcca-----------caattgctgttaagtaagttccttggtcagaagcagtgttataagaataccttgatgtgaatcatactatgtaagtccacagatggtgattttgacaaaagccttgagggcaaggaaaacaaatccatatttagagtaaacatctctttcaatgagaacaaagcactgcctcttctaagatggatgtggtccagtgcaatcaacctaccaccaggtggctatttcagcctgctgggaaatggtaccatgtcagcggctcaaagttgaactctgatgttggcaggttgggcattcaacagtgactatagacagatcagccttagtgagtggaagtccatgttgct
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79573365 469 - 134985053 gttccttcccatagggcatggaaactaaaaattttgaaaggctatttcagcattctatc-agaccagctacttcttggtaac-aaggaacatggtaatatcagtagattctataagcatgagtcca------cactgcaattgctat----tgagttcctttgtcagaagcagtgttattagcataccttgatgtgaatcatactatgtaagtccacagatggtgattttgacaaaagccttgagggcaaggaaaacaaatccgtatttagaggaaatttctcttccagtgagaacaaagcactgcctcttctaagatggatgtggtccagtgcaatcaacctacctccaggtggctatttcagcctcctgggcaatggtaccatgtcaggggctcaaagttgaactctgctgttggtaggctgggcattcaacagtgactatagacagatcagccttagtgagtggaagtccatattgct
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80673144 469 - 137757926 gttccttcccagagggcatggaaactaaaaattttgaaaggctatttcagcattctatc-agaccagctacttcttggtaac-aaggaacatggtaatatcagtagattctataagcatgagtcca------cactgcaattgctat----tgagttcctttgtcagaagcagtgttattagcataccttgatgtgaatcatactatgtaagtccacagatggtgattttgacaaaagccttgagggcaaggaaaacaaatccgtatttagaggaaatttctcttccagtgagaacaaagcactgcctcttctaagatggatgtggtccagtgcaatcaacctacctccaggtggctatttcagcctcctgggcaatggtaccatgtcaggggctcaaagttgaactctgctgttggtaggctgggcattcaacagtgactatagacagatcagccttagtgagtggaagtccatattgct
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78619043 469 - 132286798 GTTCCTTCCCAGAGGGCATGGAAACTAAAAATTTTGAAAGGCTATTTTAGCATTCTATC-AGACCAGCTACTTCTTGGTAAC-AAGGAACATGGTAATATCAGTAGATTCTATAAGCATGAGTCCA------CACTGCAATTGCTAT----TGAGTTCCTTTGTCAGAAGCAGTGTTATTAGCATACCTTGATGTGAATCATACTATGTAAGTCCACAGATGGTGATTTTGACAAAAGCCTTGAGGGCAAGGAAAACAAATCCATATTTAGAGGAAATTTCTCTTCCAGTGAGAACAAAGCACTGCCTCTTCTAAGATGGATGTGGTCCAGTGCAATCAACCTACCTCCAGGTGGCTATTTCAGCCTCCTGGGCAATGGTACCATGTCAGGGGCTCAAAGTTGAACTCTGCTGTTGGCAGGCTGGGCATTCAACAGTGACTATAGACAGATCAGCCTTAGTGAGTGGAAGTCCATATTGCT
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74554417 473 - 128539186 gttccttcccagagggcatggaaactaaaaattttgaaaggctatttcagcattctatc-agaccagccacttcttgctaac-aaggaacatggtaatatcagtagattctataagcatgagtcct------cactgcaattgctattaagtgagttccttggtcagaagcagtgttattagcataccttgatgtgaatcatactatgtaagtccacagatggtgattttgacaaaagccttgagggcaaggaaaacaaatccatatttagaggaaatttctcttccagtgagaacaaagcactgcctcttctaagatggatgtggtccagtgcaatcaacctacctccaggtggctatttcagcctcctgggcaatggtaccatgtcaggggctcaaagttgaactctgctgttggcaggctgggcattcaacagtgactatagacagatcagccttagtgagtggaagtccatattgct
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77341445 472 - 124281992 gtaccttcctagctgtcatggaaact-aaatttttgaaaggctattccagcattctgtc-agagcagatacttcagagtaat-aaggaacatggtaagatcagtagattccataagcatgagtcca------cactgcaattgctattaagtgagttccttgttcagaagcagtgttataagaataccttgatgtgaatcatactatgcaagtccacagatggtgattttgaccaaagcattgagggcaaggaaaacaaatccatatttagagtaaatgtctcttttagtgagaacaaagcattgcctcttctaagatggatgtggtccagtgcaatcaatctaccaccaggtagcgatttcagcctcctgggaaatggcaccatgtcaggggctcagagttgaactcttctgttggcaggttgggcactcaacagtgactataaacagatcagccttagtgagtggaagtccatgttgct
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67273776 420 -  69331447 gttgctacctgagtggcatgaaaact-tgatctt-------------cagcattctgtcaagaccagagacctccaggtggtgggggaacatggt---------------------catgagtccattgctccacttcaactgctattaaatgagttccttggtcaggagcgttgctgtgggaacaccttgctgcgaatcatatcatgtaagtccacagatggcagttttggcaaaagccctgagggcaaggaaaacaaatccatatctcg----gatgtctcttccaatgagaacaaagcactgcttcttccaagatggatgtggtccaattcaatcaacctgccaccaggtggctgtctcgtcct-ttggggaatgatgtcatatcagaggctcagagttggcctccgctgttggcaggctg---------------------ACAGATCAGTCCTAGTAAGTAGAAGAgcatgttgct
i canFam3.chr10             C 0 I 1743
e mm10.chr10                126816109 5727 + 130694993 I

a score=815688.000000
s hg38.chr12_GL383550v2_alt     34131 269 +    169178 gagtccatatgaaacttctacccctgctgccatggccactttgttcatgagtccattgggcatggatggaatggctgcagagaaagcctgcttgatgtccacagagcagcgcatcttgttcatctgattattaaaatcctcttttactgaggttgctctttgacgagcaatcacatggaacaaaggtcttcactctctatgcccattcagaaagatctatcaacacacctccttgtcaccaattgtctagttgtgttctttcttggggg
s panTro4.chr12              31270765 269 + 134246214 gagtccatatgtaacttctacccctgctgccatggccactttgttcatgagtccattgggcatggatggaatggctgcagagaaagcctgcttgatgtccacagagcagcgcatcttgttcatctgattattaaaatcctcttttactgaggttgctctttgatgagcaatcacatggaacaaaggtcttcactctctatgcccattcagaaagatctatccacacacctccttgtcaccaattgtctagttgtgttctttcttggggg
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78470091 265 - 136387465 gagtccatatgtaacttctacccctgctgccatggccac-ttgttcatgagtccattgggcatggatggaatggctgcagagaaagcctgcttgatgtccacagagcagggcatcttgttcatctgattattaaaatcctcttttactgaggttgctctttgatgagcaatcacatggaacaaacatcttcactctctatgcccattcagaaagatctatccacaca---ccttgtcaccaattgtttagttgtgttctttcttggggg
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54683828 269 + 123690457 gagtccatatgtaacttctacccctgctgccatggccactttgttcatgagtccattggtcatggatggaatggctgcagagaaagcctgcttgatgtccacagaacagggcatcttgttcatctgattattaaaatcctcttttactgaggttgctctttgataagcaatcacatggaacaaaggtcttcactctctatgcccattcagaaagatctatccacacacctccttgtcaccagttgtctagttgcattctttcttgggga
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79573834 268 - 134985053 gagtccatatgtaacttctacgcctgctgccatggacactttgttcatgtgtccgttgggcatggatggagtggctgtggaaaaagcct-cttgatgtccacagagcagggcatcttgttcatctgattattaaaatcctcttttactgaggttgctctttgatgagcaatcacatggaacaaaagtcttcactctctattcccattcagaaagatctatccacacacctccttgtcaccaaatgtctagttgtgttctttcttggggg
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80673613 268 - 137757926 gagtccatatgtaacttctacgcctgctgccatggacactttgttcatgtgtccgttgggcatggatggagtggctgtggaaaaagcct-cttgatgtccacagagcagggcatcttgttcatctgattattaaaatcctcttttactgaggttgctctttgatgagcaatcacatggaacaaaagtcttcactctctattcccattcagaaagatctatccacacacctccttgtcaccaaatgtctagttgtgttctttcttggggg
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78619512 268 - 132286798 GAGTCCATATGTAACTTCTACGCCTGCTGCCATGGACACTTTGTGCATGTGTCCGTTGGGCATGGATGGAGTGGCTGTGGAAAAAGCCT-CTTGATGTCCACAGAGCAGGGCATCTTGTTCatctgattattaaaatcctctttTACTGAGGTTGCTCTTTGATGAGCAATCACATGGAACAAAGGTCTTCACTCTCTATTCCCATTCAGAAAGATCTATCCACACACCTCCTTGTCACCAAATGTCTAGTTGTGTTCTTTCTTGGGGG
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74554890 268 - 128539186 gagtccatatgtaacttctacgcctgctgccatggacactttgttcatgtgtccgttgggcatggatggagtggctgtggaaaaagcct-cttgatgtccacagagcagggcatcttgttcatctgattattaaaatcctcttttactgaggttgctgtttgatgagcaatcacatggaacaaaggtcttcactctctattcccattcagagagatctatccacacacttccttgtcaccaaatctctagttgtgttctttcttggggg
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77341917 269 - 124281992 gagtccatatgtaagttctacccctgccgccacagccgttttgttcatgagtccactgggcatgggtggagaggctgtggaaaaagcctgcttgatgtccacagagcagggcatcttgttcatctgattaataaaatcctcttttaccgaggttgctctttgatgagcaatctcatgggacaaaggtcttcactctttctgcccattcagaaagctctatccacacacctccttgtcaccaattgtctagttgtgttctttcttgggag
i calJac3.chr9              C 0 C 0
e mm10.chr10                126816109 5727 + 130694993 I
e canFam3.chr10              67274196 1743 -  69331447 I

a score=591801.000000
s hg38.chr12_GL383550v2_alt     34400 171 +    169178 gatgcaaacagtcagtccataacatgaaccatctagtcaaaccattagccactgcct----gccagtataaggctgtacctggggccatctcctcttccaggaaa-----aattaataagtaggtgtactccttgaagtactgtccaacaataggagctcccttcactaccatagttcaa
s panTro4.chr12              31271034 171 + 134246214 gatgcaaacagtcagtccataacacgaaccatctagtcaaacaattagccactgcct----gccagtataaggccgtacctggggccatctcctcttccaggaaa-----aattaataagtaggtgtactccttgaagtactgtccaacaataggagctcccttcactaccatagttcaa
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78470356 167 - 136387465 gatgcaaacagtcagtccataacacaaaccatctagtcaaaccattagccactgcct----gcaagtataaggccgtacctggggccatctcctcttccaggaaa-----aattaataagtaggtgtactccttgaagtactgtccaacaataggagctcccttcact----tagttcaa
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54684097 171 + 123690457 gatgcaaacagtcagtccataacatgaaccatctagtcaaaccattagccactgcct----gccagtataaggccatacctggggccatctcctcttccaggaaa-----aattaataagtaggtgtactcctcgaagtactgtccaacaataggagctcccttcactaccatagttcaa
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79574102 167 - 134985053 gatg----cagtcagtccgtaacacgaaccatctagtcaaaccattagccactacct----accagtataaggccatacctggggccatctccttttccaagaaa-----aattaataagtaggtgtactccttgaagtactgttcaacaataggagctcccttcattaccatagttcaa
i rheMac3.chr11             C 0 I 21
s macFas5.chr11              80673881 167 - 137757926 gatg----cagtcagtccgtaacacgaaccatctagtcaaaccattagccactacct----accagtataaggccatacctggggccatctccttttccaagaaa-----aattaataagtaggtgtactccttgaagtactgttcaacaataggagctcccttcattaccatagttcaa
i macFas5.chr11             C 0 I 7
s papAnu2.chr11              78619780 171 - 132286798 GATGCAAACAGTCAGTCCGTAACACGAACCATCTAGTCAAACCATTAGCCACTACCT----ACCAGTATAAGGCCATACCTGGGGCCATCTCCTCTTCcaagaaa-----aattaataagtaGGTGTACTCCTTGAAGTACTGTTCAACAATAGGAGCTCCCTTCATTACCATAGTTCAA
i papAnu2.chr11             C 0 I 7
s chlSab2.chr11              74555158 171 - 128539186 gatgcaaacagtcagtccgtaacacgaaccatctagtcaaaccattagccactacct----accagcataaggccatacctggggccatctcctcttccaagaaa-----aattaataagtaggtgtactccttgaagtactgttcaacaataggagctcccttcattaccatagttcaa
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77342186 175 - 124281992 gatgcaaacagtcagtccataacacaaaccatctagtc-acccattagccactgcct----accagtataaggccatacctggggccatctcctcttgcagaaaaaaaataatgagtaagtaggtgtactccttaaagtactgtccaacagtaggacctcccttcattactgtagttcaa
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67275939 172 -  69331447 GACCCAAACATTCAGTCCATAACActggtcatctagtcaaaccactagccactgtctatgaatcaatataaagccatatcctgggccatctcttcttccaggaaa-----aatgagtaaccagatgtattccttggagcaccat---acaacagaatatcccttcgctgctatactttag
i canFam3.chr10             I 1743 C 0
e mm10.chr10                126816109 5727 + 130694993 I

a score=13488.000000
s hg38.chr12_GL383550v2_alt     34571 6 +    169178 agccac
s panTro4.chr12              31271205 6 + 134246214 agccac
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78470523 6 - 136387465 agccac
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54684268 6 + 123690457 atccac
i nomLeu3.chr11             C 0 C 0
s macFas5.chr11              80674055 6 - 137757926 agctcc
i macFas5.chr11             I 7 I 8
s papAnu2.chr11              78619958 6 - 132286798 AGCTCC
i papAnu2.chr11             I 7 I 8
s chlSab2.chr11              74555329 6 - 128539186 agccac
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77342361 6 - 124281992 agccac
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67276111 6 -  69331447 agtcac
i canFam3.chr10             C 0 C 0
e mm10.chr10                126816109 5727 + 130694993 I
e rheMac3.chr11              79574269 21 - 134985053 I

a score=462907.000000
s hg38.chr12_GL383550v2_alt     34577 134 +    169178 cccagagtggggcagtagtgctgagctatccatttttaggatgtgccagcatagcataccaatctataaaccaggcctgaattgttttcttcctcagtcaatatttgccataggcaaccccct-aaaagccataT
s panTro4.chr12              31271211 134 + 134246214 cccagagtggggcagtagtgctgagctatccatttttaggatgtgccagcatagcataccaatctataaaccaggcctgaattgttttcttcctcagtcaacatttgccataggcaaccccct-aaaagccataT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78470529 134 - 136387465 cccagagtggggcagtagtgctgagctatccatttttaggatgtgccagcatagcataccaatctataaaccaggcctgaattgttttcttcctcagtcaatatttgccataggcaacccccc-ataagccataT
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54684274 135 + 123690457 cccagagtggggcagtagtgctgagctatccatttctaggatgtgccagcatagcataccaatctataaaccaggcctgaattgttttcttcctcagtcaatatttgccatacggaaccccctcataagccatat
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79574290 135 - 134985053 cccagagtggggcagtagtgctgagctatccatttttaggatgtgccagcatatcataccaatctataaaccaggcctgaactatttttttcttcagtcaatatttgacatagggaaccccctaataagccataT
i rheMac3.chr11             I 21 C 0
s macFas5.chr11              80674069 135 - 137757926 cccagagtggggcagtagtgctgagctatccatttttaggatgtgccagcatatcataccaatctataaaccaggcctgaactatttttttcttcagtcaatatttgacatagggaaccccctaataagccataT
i macFas5.chr11             I 8 C 0
s papAnu2.chr11              78619972 135 - 132286798 CCCAGAGTGGGGCAGTAGTGCTGAGCTATCCATTTTTAGGATGTGCCAGCATATCATACCAATCTATAAACCAGGCCTGAACTATTTTCTTCTTCAGTCAATATTTGACATAGGGAACCCCCTAATAAGCCATAT
i papAnu2.chr11             I 8 C 0
s chlSab2.chr11              74555335 135 - 128539186 cccagagtggggcagtagtgctgagctatccatttttaggatgttccagcatatcataccaatctataaaccaggcctgaactattttcttcttcagtcaatatttgacatagggaaccccctaataagccatat
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77342367 134 - 124281992 cccagagt-gggcagtagtgctgagttattcatttttaggacatgcccgcacatcataccaatctataaaccaggcctgaattgtcttcttcctcagtcaatattggccatagggaaccccctcatgagccatat
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67276117 131 -  69331447 ctcagtgt-ggccagtagtagtgagctatctgcttttgggatgtgcctgcgtatcctgcagatccataaaccaagcctgaatcgtttccttcctctgtc---attagtcacagggaactccccaggaggccatat
i canFam3.chr10             C 0 C 0
e mm10.chr10                126816109 5727 + 130694993 I

a score=574568.000000
s hg38.chr12_GL383550v2_alt     34711 205 +    169178 ATATttgtctttagatatccatgggggattggttctaggagcccttcaaataccaaaatccacagatgtggtagtcccttatataaaatagaatagtatttgcatgcaacttttgcacatcctcctgtatactttaaatcatctccagattactt---ataactaatacaatgtaaatgctgtgtaaatagttgttatTTCTTTCTTA
s panTro4.chr12              31271345 207 + 134246214 ATATttgtccttagatatcc-tgggggattggttctaggagcccttcaaataccaaaatccacagatgtggaagtcccttatataaaatagaatagtatttgcatacaacttttgcacatcctcctgtatactttaaatcatctccagattacttataataactaatacaatgtaaatgctgtgtaaatagttgttatttctttctta
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78470663 205 - 136387465 ATATttgtccttagatatccatgggggattgagtctaggagcccttcaaataccaaaatccacagatgtggaagtcccttatataaaatagaatagtatttgcatacaacttttgcacatcctcccgtatactttaaatcatctccagattacttataataactaacacaatataaatgctgtgtaaata---gttattTCTTTCTTT
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54684409 208 + 123690457 atatttgtccttagatatccatgggggatttgttctaggagcccttcaaataccaaaattcacagatgtggaagtcccttatataaaatagaatagtatttgcacacaacttttgcacatcctcccatatactttaaatcatctccagattacttataataactaatacaatgtaaatgctgtgtaaatagttgctatatccttcttt
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79574425 200 - 134985053 ATATttgtccttagatatccatgcgggattggttctaggtgaccttcaaataccaaaatccacagatgtggaagttcc--------aatagaatagtattttcatacaacttttgcacatcctcccatatactttaactcatctccagattacttataataactaacacaatgtaaatggtgtataaatagttgttataTCTTTCTTT
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80674204 200 - 137757926 ATATttgtccttagatatccatgcgggattggttctaggtgaccttcaaataccaaaatccacagatgtggaagttcc--------aatagaatagtatttgcatacaacttttgcacatcctcccatatactttaactcatctccagattacttataataactaacacaatgtaaatggtgtataaatagttgttataTCTTTCTTT
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78620107 200 - 132286798 ATATTTGTCCTTAGATATCCATGCAGGATTGGTTCTAGGTGACCTTcaaataccaaaatccacagatgtggaagtTCC--------AATAGAATAGTATTTGCATACAACTtttgcacatcctcccatatactttaactCATCTCCAGAATACTTATAATaactaacacaatgtaaatggtgtataaatagttgttatatctttcttt
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74555470 200 - 128539186 atatttgtccttagatatccatgcgggattggttctaggtgaccttcaaataccaaaatccacagatgtggaagttcc--------aatagaatagtatttgcatacaacttttgcacatccttctgtatactttaactcatctccagattacttataataactaacacaatgtaaatggtgtataaatagctgttatatctctcttt
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77342501 208 - 124281992 acatttgtccttagatattcatgtgggattggttctaggagcccttcaaatactaaaatcaacagatgtggaaggcccttatataaaatagaatagtatctgcacacaacccttgcacatcctcctgtattccttaaatcatctccagattactcataatacctaacacaatgtaaatgctatgtaaatggttgttatatctttcttc
i calJac3.chr9              C 0 C 0
e mm10.chr10                126816109 5727 + 130694993 I
e canFam3.chr10              67276248   0 -  69331447 C

a score=438502.000000
s hg38.chr12_GL383550v2_alt     34916 162 +    169178 GTATGACTTTTATTATTGTATTGC--------TTTTTTTTTTCAAAATAGTTTTTAATCCTCAGTTGGTTGACTCTATAATGCAGAACCCTCAGATTTGGAGGG----CTAtgtgggttgagagagaggaggcaacataacatgaggagg-------ggc-------atctgggcaacttgccaagca
s panTro4.chr12              31271552 163 + 134246214 gtatgacttttattattgtattgt-------gttttttttttcaaaatagtttttaatcctcagttggttgactctataatgcagaaccctcagatttggaggg----cTAtgtgggttgagagagaggaggcaacataacatgaggagg-------ggc-------atctgggcaacttgccaagca
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78470868 159 - 136387465 GTATGACTTTTATTATTGTA--------------ttttttttcaaaata-tttttaatcctcagttggttgactctataatgcagaaccctcagatttggagggctgactATTTGggttgagagagaggaggcaacataacatgaggagg-------ggc-------atctgggcaacttgccaagca
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54684617 174 + 123690457 gtaagacttttattattgtattattatttcttttttttttttcaaaatagttttcaattctcagttggttgactctataatgcagaacccgcagatttggagggctgactatgtgggttgagagacaggaggcaacataacatgatgagg-------ggc-------atctgggcaacttgccaagca
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79574625 173 - 134985053 GTATGACTTTTATTATTGTATTGTTATTTCTTTttttgttttcaaaatagttttt-atcttcagttggttgactctataatgcagaactctcagatttggagggctgattAtgtgggttgagagagaggaggcaagataacatgaggagg-------ggc-------aactgggaaacttgccaagca
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80674404 173 - 137757926 GTATGACTTTTATTATTGTATTGTTATTTCTTTttttgttttcaaaatagttttt-atcttcagttggttgactctataatgcagaactctcagatttggagggctgattAtgtgggttgagagagaggaggcaagataacatgaggagg-------ggc-------aactgggaaacttgccaagca
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78620307 173 - 132286798 gtatgacttttattattgtattgttatttctttttttgttttcaaaatagttttt-atctTCAGTTGGTTGACTCTACAATGCAGAACCCTCAGATTTGGAGGGCTGATTATGTGGGTTGAGAGAGAGGAGGCAAGATAACATGAGGAGG-------GGC-------AACTGGGAAACTTGCCAAGCA
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74555670 173 - 128539186 gtatgacttttgttattgtattgttatttctttttttgttttcaaaatagttttt-atcttcagttggttgactctacaatgcagaaccctcagatttggagggctgattatgtgggttgagagagaggaggcaagataacatgaggagg-------ggc-------aactgggaaacttgccaagca
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77342709 175 - 124281992 gtatgacttttattattgcatcat-----tctttttttttttcaaaatagttttt-atcctccgatggttgactctacaatgcagaaccctcagatattgaggactgactatgtgggttgagagagaggaggtaagataacataatgagg-------ggccaacagaatctgggaaacttgtcaagca
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67276248  71 -  69331447 --------------------------------------------------------------------------------------------------------------gtatgactcaggaaagaggaaataagaaagcaagagtaaggtccgtaggc-------atttgtgccacctgctcattt
i canFam3.chr10             C 0 C 0
e mm10.chr10                126816109 5727 + 130694993 I

a score=3135323.000000
s hg38.chr12_GL383550v2_alt     35078  885 +    169178  
s panTro4.chr12              31271715  893 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78471027  890 - 136387465  
i ponAbe2.chr12             C 0 I 35
s nomLeu3.chr11              54684791  889 + 123690457  
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79574798  894 - 134985053  
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80674577  798 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78620480  888 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74555843  893 - 128539186  
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77342884  886 - 124281992  
i calJac3.chr9              C 0 C 0
s mm10.chr10                126821836  862 + 130694993  
i mm10.chr10                I 5727 C 0
s canFam3.chr10              67276319 1139 -  69331447  
i canFam3.chr10             C 0 C 0

a score=18006.000000
s hg38.chr12_GL383550v2_alt     35963 5 +    169178 ATTCT
s panTro4.chr12              31272608 5 + 134246214 ATTCT
i panTro4.chr12             C 0 C 0
s nomLeu3.chr11              54685680 5 + 123690457 ATTCT
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79575692 5 - 134985053 ATTCC
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80675375 5 - 137757926 ATTCC
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78621368 5 - 132286798 attcc
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74556736 5 - 128539186 ATTCC
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77343770 5 - 124281992 ATTCT
i calJac3.chr9              C 0 C 0
s mm10.chr10                126822698 5 + 130694993 ATTCT
i mm10.chr10                C 0 C 0
s canFam3.chr10              67277458 5 -  69331447 ATTCT
i canFam3.chr10             C 0 C 0
e ponAbe2.chr12              78471917 35 - 136387465 I

a score=3862610.000000
s hg38.chr12_GL383550v2_alt     35968 914 +    169178  
s panTro4.chr12              31272613 910 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78471952 919 - 136387465  
i ponAbe2.chr12             I 35 C 0
s nomLeu3.chr11              54685685 923 + 123690457  
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79575697 917 - 134985053  
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80675380 917 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78621373 918 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74556741 920 - 128539186  
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77343775 899 - 124281992  
i calJac3.chr9              C 0 C 0
s mm10.chr10                126822703 922 + 130694993  
i mm10.chr10                C 0 C 0
s canFam3.chr10              67277463 912 -  69331447  
i canFam3.chr10             C 0 I 1085

a score=374688.000000
s hg38.chr12_GL383550v2_alt     36882 105 +    169178 CTTTAAAGATTATTTTCTTGTTTGAGTTTTTTCATA-TTTTTTCGCATGGTCTCTACTATCACAATATTAAAATGAATTCCTGAAAGAAAACTGACTTTAAGCAAA
s panTro4.chr12              31273523 105 + 134246214 CTTTAAAGATTACTTTCTTGTTTGAGTTTTTTCATA-TTTTTTCACATGGTCTCTAGTATCACAATATTAAAATGAATTCCTGAAAGAAAACTGACTTTAAGCAAA
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78472871 104 - 136387465 CTTTAAAGATTATTTTCTTGTTCGAGTTTTTTCATA-TTTTTTC-CATGGTCTCTACTATCACAATATTAAAATGAATTCCTGAAAGAAAACTGACTTTAAGCAAA
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54686608 105 + 123690457 CTTTAAAGATTATTTTCTTGTTTGAGTTTTTTCATA-TTTTTTCCCGTGGTCTCTACTATCACAATATTAAAATGAATTCCTGAAAGAAAACTGACTTTAAGCAAA
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79576614 105 - 134985053 CTTTAAAGATTATTTTCTTGTTCGAGTTTTTTCATA-TTTTTTCCCATGGTCTCTACTATCACAAAATTAAAATGGATTCCTGAAAGAAAACTGACTTTAAGCAAA
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80676297 105 - 137757926 CTTTAAAGATTATTTTCTTGTTCGAGTTTTTTCATA-TTTTTTCCCATGGTCTCTACTATCACAAAATTAAAATGGATTCCTGAAAGAAAACTGACTTTAAGCAAA
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78622291 104 - 132286798 ctttaaagattattttcttgttcgagttttttcata--tttttcccaTGGTCTCTactatcacaaaattaaaatggattcCTGAAAGAAAACTGACGTTAAGCAAA
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74557661 106 - 128539186 CTTTAAAGATTATTTTCTTTTTCGAGTTTTTTCATATTTTTTTCCCATGGTCTCTACTATCACAAAATTAAAATGGATTCCTGAAAGAAAGCTGACTTTAAGCAAA
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77344674 105 - 124281992 -TTTAAAGATTATTTTCTTGTTCGAGTTTTTTCATATTTTCTTCCCATGGTCTGTATTGTCACAGTATTCAAATGCCTTCCTGAAAGAAAACTGAGGTTAAGCAAA
i calJac3.chr9              C 0 C 0
s mm10.chr10                126823625 102 + 130694993 CTTTCACTGGTATTTTCCTGGCTAAGTTCTTCCCTGTTCCTTTCACAT--CCTCCATGACAACAGTCTTCCAA-GATTTCCTG-AAGAGAGCTAACTTTAAGAAAA
i mm10.chr10                C 0 I 11064
s canFam3.chr10              67279460 103 -  69331447 CTTTAAAGACAATTTTCTTGTTTGGATCCTTCCAGA--CTTTTTACATGGTGTCTA-TGGAATAGTATTCAAATGACTTCCTGAAAGAGAATTGACTTTAAGCAAA
i canFam3.chr10             I 1085 C 0

a score=366441.000000
s hg38.chr12_GL383550v2_alt     36987 105 +    169178 GGTACACTCTAAGTTCTACATTTTCACTTATGCCGGAATGACCAGCTAACTTCTACTTTAACCTCACTTAGCTATTTTGCTGTAGACTATTCATGTAACTAAAAA
s panTro4.chr12              31273628 105 + 134246214 GGTACACTCTAAGTTCTACATTTTCACTTATGCCAGAATGACCAGCTAACTTCTACTTTAACCTCACTTAGCTATTTTGCTGTAGACTATTCATGTAACTAAAAA
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78472975 105 - 136387465 GGTACACTCTAAGTTCTACATTTTCACTTATGCCAGAATGACCAGCTAACTTCTACTTTAACCTCACTTAGCTATTTTGCTGTATACTATTCATATAACTAAAAA
i ponAbe2.chr12             C 0 I 12
s nomLeu3.chr11              54686713 103 + 123690457 GGTGCGCTCTAAGTTCTACGTTTTCACTTATGCCAGAATGACCAGCTAACTTCTACTTTAACCT--CTCAGCTATTTTGCTGTAGACTATTCACATAACTAAAAA
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79576719 105 - 134985053 GGTACACTCTAAGTTCTACATTTTCACTTATGCCAGAATGACCAGCTAACTTCTACTTTAACCTCACTTAGCTGTTTTGCTGTAGACTATTCATGTAACTAAAAA
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80676402 105 - 137757926 GGTACACTCTAAGTTCTACATTTTCACTTATGCCAGAATGACCAGCTAACTTCTACTTTAACCTCACTTAGCTGTTTTGCTGTAGACTATTCATATAACTAAAAA
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78622395 105 - 132286798 GGTACACTCTAAGTTCTACATTTTCACTTACGCCAGAATGACCAGCTAACTTCTACTTTAACCTCACTTAGCTGTTTTGCTGTAGACTATTCATATAACTAAAAA
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74557767 105 - 128539186 GGTACACTCTAAGTTCTACATTTTCACTTATGCCAGAATGACCAGCTAACTTCTACTTTAACCTCACTTAGCTGTTTTGCTGTAGACTGTTCATATAACTAAAAA
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77344779 105 - 124281992 GGTCCACTCTAAGTTTTACATTTTCACGTATGCCAGAACGACTAGCCAACTTCTACTTTAACTACACTTACCTATTTTCCTATAGGCTATTCATATGACTAAAAA
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67279563 105 -  69331447 TACACGCTGTAAGCTCTATGTTCTGACATATGCTAGAATGACCATCTAATTTCTGCGTTAATTAGAGTTGGCTCTTTTGCGGTGGACTATTTATATGACTAAAAA
i canFam3.chr10             C 0 C 0
e mm10.chr10                126823727 11064 + 130694993 I

a score=22856.000000
s hg38.chr12_GL383550v2_alt     37092 7 +    169178 GGTAACT
s panTro4.chr12              31273733 7 + 134246214 GGTAACT
i panTro4.chr12             C 0 C 0
s nomLeu3.chr11              54686816 7 + 123690457 GGTAACT
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79576824 7 - 134985053 GGTAACT
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80676507 7 - 137757926 GGTAACT
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78622500 7 - 132286798 GGTAACt
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74557872 7 - 128539186 GGTAACT
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77344884 7 - 124281992 GGTAACT
i calJac3.chr9              C 0 I 35252
s canFam3.chr10              67279668 7 -  69331447 GGTAATT
i canFam3.chr10             C 0 C 0
e mm10.chr10                126823727 11064 + 130694993 I
e ponAbe2.chr12              78473080 12 - 136387465 I

a score=126561.000000
s hg38.chr12_GL383550v2_alt     37099 54 +    169178 AAAAGAAAGGTAGAAAAATTAGGAAAAGCATTATTATGCCTCTGTCTAGCTTTT
s panTro4.chr12              31273740 54 + 134246214 AAAAGAAAGGTAGGAAAATTAGGAAAAGCGTTATTATGCCTCTGTCTAGCTTTT
i panTro4.chr12             C 0 C 0
s nomLeu3.chr11              54686823 54 + 123690457 AAAAGAAAGGTAGAAAAATTAGGAAAAGCATTATTATGCCTCTGTCTAGCTTTT
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79576831 54 - 134985053 AAAAGAAAGGTAGAAAAATTAGGAAAAGCATTATTATGCCTTTGTCTAGCTTTT
i rheMac3.chr11             C 0 I 21187
s macFas5.chr11              80676514 54 - 137757926 AAAAGAAAGGTAGAAAAATTAGGAAAAGCATTATTATGCCTTTGTCTAGCTTTT
i macFas5.chr11             C 0 I 1
s papAnu2.chr11              78622507 54 - 132286798 aaaagaaaggtagaaaaattAGGAAAAGCATTATTATGCCTCTGTCTagctttt
i papAnu2.chr11             C 0 I 22785
s chlSab2.chr11              74557879 54 - 128539186 AAAAGAAAGGTAGAAAAATTAGGAAAAGCATTATTATGCCTCTGTCTAGCTTTT
i chlSab2.chr11             C 0 I 12589
s canFam3.chr10              67279675 54 -  69331447 AACAGAAAGGTAGAAACATTAAGGAAACCATTATCAGGCCTCTATTGAGCTTTT
i canFam3.chr10             C 0 C 0
e mm10.chr10                126823727 11064 + 130694993 I
e calJac3.chr9               77344891 35252 - 124281992 I
e ponAbe2.chr12              78473080 12 - 136387465 I

a score=4140.000000
s hg38.chr12_GL383550v2_alt     37153 20 +    169178 -ATTCTCA----TTAGAATAttttt
s panTro4.chr12              31273794 20 + 134246214 -ATTCTCA----TTAGAATATTTTT
i panTro4.chr12             C 0 I 4057
s nomLeu3.chr11              54686877 20 + 123690457 -ATTCTCA----TTAGAATATTTTT
i nomLeu3.chr11             C 0 C 0
s macFas5.chr11              80676569 24 - 137757926 -GTTTTCAAAGTTTGGCATAGTCTA
i macFas5.chr11             I 1 C 0
s canFam3.chr10              67279729 20 -  69331447 TGTTTTCTAAGTTTGTTATG-----
i canFam3.chr10             C 0 C 0
e mm10.chr10                126823727 11064 + 130694993 I
e calJac3.chr9               77344891 35252 - 124281992 I
e chlSab2.chr11              74557933 12589 - 128539186 I
e papAnu2.chr11              78622561 22785 - 132286798 I
e rheMac3.chr11              79576885 21187 - 134985053 I
e ponAbe2.chr12              78473080 12 - 136387465 I

a score=312.000000
s hg38.chr12_GL383550v2_alt     37173 3 +    169178 ttt
s nomLeu3.chr11              54686897 3 + 123690457 ATT
i nomLeu3.chr11             C 0 I 12747
s macFas5.chr11              80676593 3 - 137757926 TTT
i macFas5.chr11             C 0 C 0
s canFam3.chr10              67279749 3 -  69331447 GTC
i canFam3.chr10             C 0 C 0
e mm10.chr10                126823727 11064 + 130694993 I
e calJac3.chr9               77344891 35252 - 124281992 I
e chlSab2.chr11              74557933 12589 - 128539186 I
e papAnu2.chr11              78622561 22785 - 132286798 I
e rheMac3.chr11              79576885 21187 - 134985053 I
e ponAbe2.chr12              78473080 12 - 136387465 I
e panTro4.chr12              31273814 4057 + 134246214 I

a score=273.000000
s hg38.chr12_GL383550v2_alt     37176 1 +    169178 t
s macFas5.chr11              80676596 1 - 137757926 T
i macFas5.chr11             C 0 I 22803
s canFam3.chr10              67279752 1 -  69331447 T
i canFam3.chr10             C 0 C 0
e mm10.chr10                126823727 11064 + 130694993 I
e calJac3.chr9               77344891 35252 - 124281992 I
e chlSab2.chr11              74557933 12589 - 128539186 I
e papAnu2.chr11              78622561 22785 - 132286798 I
e rheMac3.chr11              79576885 21187 - 134985053 I
e nomLeu3.chr11              54686900 12747 + 123690457 I
e ponAbe2.chr12              78473080 12 - 136387465 I
e panTro4.chr12              31273814 4057 + 134246214 I

a score=341.000000
s hg38.chr12_GL383550v2_alt     37177 6 +    169178 tttttt
s canFam3.chr10              67279753 6 -  69331447 GTTTTT
i canFam3.chr10             C 0 I 3237
e mm10.chr10                126823727 11064 + 130694993 I
e calJac3.chr9               77344891 35252 - 124281992 I
e chlSab2.chr11              74557933 12589 - 128539186 I
e papAnu2.chr11              78622561 22785 - 132286798 I
e macFas5.chr11              80676597 22803 - 137757926 I
e rheMac3.chr11              79576885 21187 - 134985053 I
e nomLeu3.chr11              54686900 12747 + 123690457 I
e ponAbe2.chr12              78473080 12 - 136387465 I
e panTro4.chr12              31273814 4057 + 134246214 I

a score=0.000000
s hg38.chr12_GL383550v2_alt     37183 286 +    169178 tttttgagacggagtctcgctctgtcgcccaggctggagtgcagtggcgggatctcggctcactgcaagctccgcctcccgggttcacgccattctcctgcctcagcctcccaagtagctgggactacaggcgcccgccactacgcccggctaattttttgtatttttagtagagacggggtttcaccgttttagccgggatggtctcgatctcctgacctcgtgatccgcccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccggcc
e mm10.chr10                126823727 11064 + 130694993 I
e canFam3.chr10              67279759 3237 -  69331447 I
e calJac3.chr9               77344891 35252 - 124281992 I
e chlSab2.chr11              74557933 12589 - 128539186 I
e papAnu2.chr11              78622561 22785 - 132286798 I
e macFas5.chr11              80676597 22803 - 137757926 I
e rheMac3.chr11              79576885 21187 - 134985053 I
e nomLeu3.chr11              54686900 12747 + 123690457 I
e ponAbe2.chr12              78473080  12 - 136387465 I
e panTro4.chr12              31273814 4057 + 134246214 I

a score=361139.000000
s hg38.chr12_GL383550v2_alt     37469 4155 +    169178  
s ponAbe2.chr12              78473092 4150 - 136387465  
i ponAbe2.chr12             I 12 C 0
e mm10.chr10                126823727 11064 + 130694993 I
e canFam3.chr10              67279759 3237 -  69331447 I
e calJac3.chr9               77344891 35252 - 124281992 I
e chlSab2.chr11              74557933 12589 - 128539186 I
e papAnu2.chr11              78622561 22785 - 132286798 I
e macFas5.chr11              80676597 22803 - 137757926 I
e rheMac3.chr11              79576885 21187 - 134985053 I
e nomLeu3.chr11              54686900 12747 + 123690457 I
e panTro4.chr12              31273814 4057 + 134246214 I

a score=151497.000000
s hg38.chr12_GL383550v2_alt     41624 578 +    169178  
s panTro4.chr12              31277871 578 + 134246214  
i panTro4.chr12             I 4057 C 0
s ponAbe2.chr12              78477242 578 - 136387465  
i ponAbe2.chr12             C 0 I 1758
e mm10.chr10                126823727 11064 + 130694993 I
e canFam3.chr10              67279759 3237 -  69331447 I
e calJac3.chr9               77344891 35252 - 124281992 I
e chlSab2.chr11              74557933 12589 - 128539186 I
e papAnu2.chr11              78622561 22785 - 132286798 I
e macFas5.chr11              80676597 22803 - 137757926 I
e rheMac3.chr11              79576885 21187 - 134985053 I
e nomLeu3.chr11              54686900 12747 + 123690457 I

a score=806223.000000
s hg38.chr12_GL383550v2_alt     42202 8918 +    169178  
s panTro4.chr12              31278449 8935 + 134246214  
i panTro4.chr12             C 0 C 0
e mm10.chr10                126823727 11064 + 130694993 I
e canFam3.chr10              67279759 3237 -  69331447 I
e calJac3.chr9               77344891 35252 - 124281992 I
e chlSab2.chr11              74557933 12589 - 128539186 I
e papAnu2.chr11              78622561 22785 - 132286798 I
e macFas5.chr11              80676597 22803 - 137757926 I
e rheMac3.chr11              79576885 21187 - 134985053 I
e nomLeu3.chr11              54686900 12747 + 123690457 I
e ponAbe2.chr12              78477820 1758 - 136387465 I

a score=467061.000000
s hg38.chr12_GL383550v2_alt     51120 1752 +    169178  
s panTro4.chr12              31287384 1742 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78479578 1753 - 136387465  
i ponAbe2.chr12             I 1758 C 0
e mm10.chr10                126823727 11064 + 130694993 I
e canFam3.chr10              67279759 3237 -  69331447 I
e calJac3.chr9               77344891 35252 - 124281992 I
e chlSab2.chr11              74557933 12589 - 128539186 I
e papAnu2.chr11              78622561 22785 - 132286798 I
e macFas5.chr11              80676597 22803 - 137757926 I
e rheMac3.chr11              79576885 21187 - 134985053 I
e nomLeu3.chr11              54686900 12747 + 123690457 I

a score=524039.000000
s hg38.chr12_GL383550v2_alt     52872 974 +    169178  
s panTro4.chr12              31289126 974 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78481331 985 - 136387465  
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54699647 980 + 123690457  
i nomLeu3.chr11             I 12747 C 0
e mm10.chr10                126823727 11064 + 130694993 I
e canFam3.chr10              67279759 3237 -  69331447 I
e calJac3.chr9               77344891 35252 - 124281992 I
e chlSab2.chr11              74557933 12589 - 128539186 I
e papAnu2.chr11              78622561 22785 - 132286798 I
e macFas5.chr11              80676597 22803 - 137757926 I
e rheMac3.chr11              79576885 21187 - 134985053 I

a score=792038.000000
s hg38.chr12_GL383550v2_alt     53846 960 +    169178  
s panTro4.chr12              31290100 953 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78482316 949 - 136387465  
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54700627 977 + 123690457  
i nomLeu3.chr11             C 0 C 0
s chlSab2.chr11              74570522 971 - 128539186  
i chlSab2.chr11             I 12589 C 0
e mm10.chr10                126823727 11064 + 130694993 I
e canFam3.chr10              67279759 3237 -  69331447 I
e calJac3.chr9               77344891 35252 - 124281992 I
e papAnu2.chr11              78622561 22785 - 132286798 I
e macFas5.chr11              80676597 22803 - 137757926 I
e rheMac3.chr11              79576885 21187 - 134985053 I

a score=891116.000000
s hg38.chr12_GL383550v2_alt     54806 818 +    169178  
s panTro4.chr12              31291053 818 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78483265 817 - 136387465  
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54701604 818 + 123690457  
i nomLeu3.chr11             C 0 C 0
s chlSab2.chr11              74571493 801 - 128539186  
i chlSab2.chr11             C 0 C 0
s canFam3.chr10              67282996 817 -  69331447  
i canFam3.chr10             I 3237 C 0
e mm10.chr10                126823727 11064 + 130694993 I
e calJac3.chr9               77344891 35252 - 124281992 I
e papAnu2.chr11              78622561 22785 - 132286798 I
e macFas5.chr11              80676597 22803 - 137757926 I
e rheMac3.chr11              79576885 21187 - 134985053 I

a score=10316.000000
s hg38.chr12_GL383550v2_alt     55624 12 +    169178 TGAATGTATGAA-
s panTro4.chr12              31291871 12 + 134246214 TGAATGTATGAA-
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78484082 12 - 136387465 TGAATGTATGGA-
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54702422 12 + 123690457 TGAATGTATGAT-
i nomLeu3.chr11             C 0 C 0
s macFas5.chr11              80699400 12 - 137757926 TGTATTTATCAT-
i macFas5.chr11             I 22803 C 0
s papAnu2.chr11              78645346 12 - 132286798 tgtatttatcat-
i papAnu2.chr11             I 22785 C 0
s chlSab2.chr11              74572294 12 - 128539186 TGAATGTATCAT-
i chlSab2.chr11             C 0 C 0
s canFam3.chr10              67283813 11 -  69331447 TGAA--CATCAAT
i canFam3.chr10             C 0 C 0
e mm10.chr10                126823727 11064 + 130694993 I
e calJac3.chr9               77344891 35252 - 124281992 I
e rheMac3.chr11              79576885 21187 - 134985053 I

a score=117430.000000
s hg38.chr12_GL383550v2_alt     55636 44 +    169178 CTATAAACCAATAATTTGTAAAGTTCCTGACTGTCTTTCTTCCA
s panTro4.chr12              31291883 44 + 134246214 CTATAAACCAATAATTTGTAAAGTTCCTGACTGTCTTTCTTCCA
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78484094 40 - 136387465 CTATAAACCAATAATTTGTAAAGTTCCTGA----CTTTCTTCCA
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54702434 44 + 123690457 CTATAAACCAACAGTTTGTAAAGTTCCTGACTGTCTTTCATCCA
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79598072 44 - 134985053 CTATAAACCAATAATTTGTAAAATTCCTGACTGTCTTTCTTCCA
i rheMac3.chr11             I 21187 C 0
s macFas5.chr11              80699412 44 - 137757926 CTATAAACCAATAATTTGTAAAATTCCTGACTGTCTTTCTTCCA
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78645358 44 - 132286798 CTATAAACCAATAATTTGTAAAGTTCCTGACTGTCTTTCTTCCA
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74572306 44 - 128539186 CTATAAACCAATAATTTGTAAAATTCCTGACTGTCTTTCTTCCA
i chlSab2.chr11             C 0 C 0
s canFam3.chr10              67283824 44 -  69331447 ATATGAACCAGTGCTTTGAAAAGCTCCTCACCATCACTCCCTCA
i canFam3.chr10             C 0 I 1102
e mm10.chr10                126823727 11064 + 130694993 I
e calJac3.chr9               77344891 35252 - 124281992 I

a score=18340.000000
s hg38.chr12_GL383550v2_alt     55680 7 +    169178 GAACTTT
s panTro4.chr12              31291927 7 + 134246214 GAACTTT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78484134 7 - 136387465 GAACTTT
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54702478 7 + 123690457 GAACTTT
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79598116 7 - 134985053 GAACTTT
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80699456 7 - 137757926 GAACTTT
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78645402 7 - 132286798 GAACTTT
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74572350 7 - 128539186 GAACTTT
i chlSab2.chr11             C 0 C 0
e mm10.chr10                126823727 11064 + 130694993 I
e canFam3.chr10              67283868 1102 -  69331447 I
e calJac3.chr9               77344891 35252 - 124281992 I

a score=6876.000000
s hg38.chr12_GL383550v2_alt     55687 2 +    169178 GA
s panTro4.chr12              31291934 2 + 134246214 GA
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78484141 2 - 136387465 GA
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54702485 2 + 123690457 GA
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79598123 2 - 134985053 GA
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80699463 2 - 137757926 GA
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78645409 2 - 132286798 GA
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74572357 2 - 128539186 GA
i chlSab2.chr11             C 0 C 0
s mm10.chr10                126834791 2 + 130694993 GA
i mm10.chr10                I 11064 C 0
e canFam3.chr10              67283868 1102 -  69331447 I
e calJac3.chr9               77344891 35252 - 124281992 I

a score=834335.000000
s hg38.chr12_GL383550v2_alt     55689 310 +    169178 AAAGTTTTGAAATCCATAATAGT----TTTTTTAAGTGTAAGTCAATGTTATTACAGAATGACAATTTTTGTTACATCTTTTGAACT-----------------GGTACACTCATGGAGTGTGGGAACTTCTCTTAC-TTTGCAacaatacatcataacagatatgactatggccattactgtcacaaagtcatgggtttcaacccggttctgtcactcactggctggaatcctgagtgaggtttttaacctccctgaggctcagttaccccatcggtaaaatggagatagtaatacttatttcagaggagtgttgaaacaattaatgtatg
s panTro4.chr12              31291936 310 + 134246214 AAAGTTTTGAAATCCATAATAGG----TTTTTTAAGTGTAAGTCAATGTTATTACAGAATGACAATTTTTGTTACATCTTTTGAACT-----------------GCTACACTCATGGAGTGTGGGAACTTCTCTTAC-TTTGCAacaatacatcataacagacatgactatggccattactgtcacaaagtcatgggtttcaacccggttctgtcactcactggctggaatcctgagcgaagtttttaacctccctgaggctcagttaccccatcggtaaaatggagatagtaatacctatttcagaggaatgttgaaacaattaatgtatg
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78484143 310 - 136387465 AAAGTTTTGAAATCCATAATAGG----TTTTTTAAGCGTAAGTCAATGTTATTACAGAATGACAATTTTTGTTACATCTTTTGAACT-----------------GGTACGCTCATGGAGTGTGGGAACTTCTCTTAC-TTTGCAacaatacatcataacagacatgactatggccattactgtcacaaagtcatgggtttcaaccctgttctgtcactcactggctgggatcctgagcaaggtttttaacctccctgaggctcagttaccccatcggtaaaatggagatagtaatacctatttcagaggagtgttgaaacaattaatgtatg
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54702487 320 + 123690457 AAAGTTTTGAAATCCATAATAGG---TTTTTTTAAGCGTAAGTCAATGTTATTACAGAATGACAATTTTTGTTATATCTTTTGAACTATCAATAGAGAGTGATAGTTACACTCATGGAGTGTGGGAACTTCTCTTAC-TTTGCAacaatacagcataacagacatgactatggccattactgtcacaaagtcatgggtttcaacctggttctgccactcactggctgggatcctgagcaag--------cctccctgaggctcagttaccccatcggaaaaatggagataataatacctatttcagaggagtgttgaaacaattaatgtgtg
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79598125 307 - 134985053 AAAGTTTTGAAATCCATAATAGA--TTTTTTTTAAGTGTAAGTCAATGTTATTACAGAATGACAATTTTTGTTACATCTTTTGAACT-----------------GGTACATTCATGGAGTGTGGGAACTTCTCTTAC-TT----Gcaatacagcataacagacatgactatggccattactgtcacaaagtcatgggtttcaacctggttctgtcactcactggctgagatcctgaccaaggtttttaacctccctgaggctcagataccctatcagtaaaatggagat-ataatacctatttcagaggagtgttgaaacaattaatgtata
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80699465 308 - 137757926 AAAGTTTTGAAATCCATAATAGG--TTTTTTTTAAGTGTAAGTCAATGTTATTACAGAATGACAATTTTTGTTACATCTTTTGAACT-----------------GGTACATTCATGGAGTGTGGGAACTTCTCTTAC-TT----Gcaatacagcataacagacatgactatggccattactgtcacaaagtcatgggtttcgacctggttctgtcactcactggctgagatcctgaccaaggtttttaacctccctgaggctcagataccccatcagtaaaatggagataataatacctatttcagaggagtgttgaaacaattaatgtata
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78645411 309 - 132286798 AAAGTTTTGAAATCCataatagg-tttttttttaagtgtaagtCAATGTTATTACAGAATGACAATTTTTGTTACATCTTTTGAACT-----------------GGTACATTCATGGAGTGTGGGAACTTCTCTTAC-TT----GCAATACAGCATAACAGACATGACTATGGCCATTACTGTCACAAAGTCATGGGTTTCGACCTGGTTCTGTCACTCACTGGCTGAGATCCTGACTAAGGTTTTTAACCTCCCTGAGGCTCAGATACCCCATcggtaaaatggagataataatacctatttCAGAGGAGTGTTGAAAcaattaatgtata
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74572359 311 - 128539186 AAAGTTTTGAAATCCATAATAGGTTTTTTTTTTAAGTGTAAGTCAGTGTTATTACAGAATGACAATTTTTGTTACATCTTTTGAACT-----------------GGTACATTCATGGAGTGTGGGAACTTCTCTTACTTT----Gcaatacagcataacagacatgactatggccattactgtcacaaagtcatgggtttcaacctggttctgtcactcactggctgagatcctgaccaaggtttttaacctccctgaggctcagttaccccatcggtaagacagagataataatacctatttcagaggagtgttgaaacaattaatgtata
i chlSab2.chr11             C 0 C 0
s mm10.chr10                126834793 209 + 130694993 AAAGTTCTGTGATCC-----AGG----CTGTTAACATTTAAGTCCACTCTGGTATAAAGAACC--------TTATGTCTCTTGAGCC-----------------ACCATACT---------TGGGACGTCCCCACCC-TC--CCACAATACAGCACAGCAGATA-GAC-ATGGCTA----TGTCACAGAG-------------------------ATTCACCA----------------------TCAGTACCCTAGATACTCA---------------------AGAT-ATGACACCTACTTTGGAGG-GTGCTGTAATGACTAGTACAC-
i mm10.chr10                C 0 C 0
s canFam3.chr10              67284970 288 -  69331447 AAATTTTTGTAATCTGTAATAGG----CTTTGAAAGCATAAGTTGACTTTTGTATAGAATGACAATTTTTATTACATCTCTTGAACC--------------------ACACTCATGGAGTGTAGGA--TTCTCCCCT-TT----GCA--acagcatagtagacatgactatggcaactggcatcatgaagacatggatttgaa-------ctgtcactcattagctggaaccctgagcaatgttcttaaactcactgaggctcaattacaccatctgtaaaatggagataataatac----ttcagaggagtgtggtcaggattaaTGTATA
i canFam3.chr10             I 1102 I 522
e calJac3.chr9               77344891 35252 - 124281992 I

a score=52235.000000
s hg38.chr12_GL383550v2_alt     55999 15 +    169178 tttaaagcacttaat
s panTro4.chr12              31292246 15 + 134246214 tttaaagcacttaat
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78484453 15 - 136387465 tttaaagcacttaat
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54702807 15 + 123690457 tttaaagcacttaat
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79598432 15 - 134985053 tttaaagcacttaac
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80699773 15 - 137757926 tttaaagcacttaac
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78645720 15 - 132286798 tttaaagcACTTAAC
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74572670 15 - 128539186 tttaaagcacttaac
i chlSab2.chr11             C 0 C 0
s mm10.chr10                126835002 15 + 130694993 TTTACAACACTTATA
i mm10.chr10                C 0 C 0
s canFam3.chr10              67285780 15 -  69331447 TTTAAAGTACTTAAT
i canFam3.chr10             I 522 I 1
e calJac3.chr9               77344891 35252 - 124281992 I

a score=3376097.000000
s hg38.chr12_GL383550v2_alt     56014  973 +    169178  
s panTro4.chr12              31292261  973 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78484468  970 - 136387465  
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54702822  974 + 123690457  
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79598447  973 - 134985053  
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80699788  973 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78645735  968 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74572685  973 - 128539186  
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77380143  962 - 124281992  
i calJac3.chr9              I 35252 C 0
s mm10.chr10                126835017 1032 + 130694993  
i mm10.chr10                C 0 I 681
s canFam3.chr10              67285796  896 -  69331447  
i canFam3.chr10             I 1 C 0

a score=7497.000000
s hg38.chr12_GL383550v2_alt     56987 2 +    169178 GT
s panTro4.chr12              31293234 2 + 134246214 GT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78485438 2 - 136387465 GT
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54703796 2 + 123690457 GT
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79599420 2 - 134985053 GT
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80700761 2 - 137757926 GT
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78646703 2 - 132286798 GT
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74573658 2 - 128539186 GT
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77381105 2 - 124281992 GT
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67286692 2 -  69331447 GC
i canFam3.chr10             C 0 C 0
e mm10.chr10                126836049 681 + 130694993 I

a score=3284152.000000
s hg38.chr12_GL383550v2_alt     56989 851 +    169178  
s panTro4.chr12              31293236 848 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78485440 848 - 136387465  
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54703798 848 + 123690457  
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79599422 848 - 134985053  
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80700763 848 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78646705 850 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74573660 848 - 128539186  
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77381107 843 - 124281992  
i calJac3.chr9              C 0 C 0
s mm10.chr10                126836730 810 + 130694993  
i mm10.chr10                I 681 C 0
s canFam3.chr10              67286694 825 -  69331447  
i canFam3.chr10             C 0 I 5

a score=379957.000000
s hg38.chr12_GL383550v2_alt     57840 123 +    169178 aatctcaatccaggcatttccaggcattctttttataaaatgcaaCAAgcagagacaggattgaaaccctgtttcatctgcctt-aaaacgcttgctcttttcccctacaacatactgtttccc
s panTro4.chr12              31294084 123 + 134246214 aatctcaatccaggcatttccaggcattctttttataaaatgcaaCAAgcagagacaggattgaaaccctgtttcatctgcctt-aaaactcttgctcttttcccctacaacatactgtttccc
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78486288 123 - 136387465 AATCTCAATCCAGGCATTTCCAGGCATTCTTTTTATAAAATGCAACAAgcagagacaggattgaaaccctgtttcatctgcctt-aaaactcttgctcttttcccctacaacatactgtttcgc
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54704646 123 + 123690457 aatctcaatccaggcatttccaggcattctttttataaaatggaaCAAgcagagacaggattgaaaccctatttcatctgcctt-aaaactcttgctcttttcccctacaacatactgtttccc
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79600270 124 - 134985053 gatctcaatccaggcatttccaggcatactttttataaaatgcaaCAAgcagagccaggattgaaaccctgtttcatttgcctaaaaaactcttgcccttttcccctacaacatactctttcct
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80701611 124 - 137757926 gatctcaatccaggcatttccaggcatactttttataaaatgcaGCAAgcagagccaggattgaaaccctgtttcatttgcctaaaaaactcttgctcttttcccctacaacatactctttcct
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78647555 124 - 132286798 GATCTCAATCCAGGCATTTCCAGgcattctttttataaaatgcaaCAAGCAGAGCCAGGATTGAAACCCTGTTTCATTTGCCTAAAAAACTCTTGCTCTTTTCCCCTACAACATACTCTTTCCT
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74574508 124 - 128539186 gatctcaatccaggcatttccaggcaatctttttataaaatgcaaCAAgcagagccaggattgaaaccctgtttcatttgcctgaaaaactcttgctcttttcccctacaacatactctttccc
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77381950 122 - 124281992 AATCTCAATCCAGACATTTCCAGGCATCCTTTTTATAAAATGTAACAAGGAGAGCCTAGATTGAAACCCTGTTTCATTTGCCTAAAAAACTCCT--TTTTTCCCCCTACAACATACTCCTTCAC
i calJac3.chr9              C 0 C 0
s mm10.chr10                126837540 113 + 130694993 ------AGTCTAAG----TCCAAACACCCACTCTATAAAACGCTACAGGCAGCATGAAGACTGGAACACGGGTTCTGATGTTTGCAAAGCT-GTGCTCTTTTCTTGTACCCTACATTATATCCC
i mm10.chr10                C 0 I 2855
e canFam3.chr10              67287519   5 -  69331447 I

a score=781789.000000
s hg38.chr12_GL383550v2_alt     57963 271 +    169178 ctgGATGGTCATCCGTAACAACATAAATGTGAATGAGCTTTTTTCCTAAGTGAGAAGAAATAAAGTAGCATCTGCAAACCCTGAGCAAGCAGAGTTGAAGACTCAGGAAAGGGGGAAAAG-CATAGATGAGGAAACTGGGAAAAGACAAAAGAATAATGTCTACTTCAATTTTGCCTAGATTTAGCCATGACTAGAATCTGACTTCTATGAATTCTGTCTACAATGTAACATAGTGGTAACCTATCTTAAAGATCTCCTGTCACTGCAGAAA
s panTro4.chr12              31294207 271 + 134246214 tTGGATGGTCATCAGTAACAACATAAATGTGAATGAGCTTTTTTCCTAAGTGAGAAGAAATAAAGTAGCATCTGCAAACCCTGAGCAAGCAGAGTTGAAGACTCAGGAAAGGGGGAAAAG-CATAGATAAGGAAACTGGGAAAAGACAAAAGAATAATGTCTACTTCAATTTTGCCTAGATTTAGCCATGACTAGAATCTGACTTCTATGAATTCTGTCTACAATGTAACATAGTGGTAACCCATCTTAAAGATCTCCTGTCACTGCAGAAA
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78486411 271 - 136387465 tTGGATGGTCATCAGTAACAACATAAATGTGAATGAGCTTTTTTCCTAAGTGAGAAGAATTAAATTAGCATCTGCAAACCCTGAACAAGCAGAGTTGAAGACTCAGGAAAGGGGGAAAAG-CATAGATAAGGAAACTGGGAAAAGACAAAAGAATAATGTCTACTTCAATTTTGCCTAGATTTAGCCATGACTAGAATCTGACTTCTATGAATTCTGTCTACAATGTAACATAGTGGTAACCCATCTTAAAGATTTCCTGTCACTGCAGAAA
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54704769 271 + 123690457 tTGGATGGCCATCAGTAACAACGCAAATGTGAATGAGCTTTTTTCCTAAGAGAGAAGAAGTAAATTAGCATCTGCAAACCCTGAGCAAGCAGAGTTGAAGACTCAGGAAAGGGGGAAAAG-CATAGATAAGGAAACTGGGAAAAGACAAAAGAATAATGTCTACTTCGATTTTGCCTAGATTTAGCCATGACTAGAATCTAACTTCTATGAATTCTGTCTACAATGTAACATAGTGGTAACCCATCTTAAAGATCTCCTGTCACTGCAGAAA
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79600394 271 - 134985053 ttgGATGGTCATCAGTAACAATATAAATGTGAAGGAGCTTTTTTCCTAAGTGAGAAGAAATAAATTAGCATCTGCAAACCCTAAGCAAGCAGAGTTGAAGACTCAGGAAAGGGGGAAGGG-CATAGATAAGGAAACTGAGAAAAGACATAAGAATAATGTCTACTTCAATTTTGCCTAGATTTGGCCATGACTAGAATCTGACTTCTATTAATTCTGTCTACAATGTAACATAGTGGTAACCCATCTTAAAGATCTCCTGTCACTGCAGAAA
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80701735 271 - 137757926 ttgGATGGTCATCAGTAACAATATAAATGTGAAGGAGCTTTTTTCCTAAGTGAGAAGAAATAAATTAGCATCTGCAAACCCTAAGCAAGCAGAGTTGAAGACTCAGGAAAGGGGGAAGGG-CATAGATAAGGAAACTGAGAAAAGACATAAGAATAATGTCTACTTCAATTTTGCCTAGATTTGGCCATGACTAGAATCTGACTTCTATTAATTCTGTCTACAATGTAACATAGTGGTAACCCATCTTAAAGATCTCCTGTCACTGCAGAAA
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78647679 271 - 132286798 TTGGATGGTCATCAGTAACAATATAAATGTGAAGGAGCTTTTTTCCTAagtgagaagaaataaattagcATCTGCAAACCCTAAGCAAGCAGAGTTGAAGACTCAGGAAAGGGGGAAGGg-catagataaggaaactgagaaaagacaTAAGAATAATGTCTACTTCAATTTTGCCTAGATTTGGCCATGACTAGAATCTGACTTCTATTAATTCTGTCTACAATGTAACATAGTAGTAACCCATCTTAAAGATCTCCTGTCACTGCAGAAA
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74574632 271 - 128539186 tTGGATGGTCATCAGTAACAACATAAATGTGAAGGAGCTTTTTTCCTAAGTGAGAAGAAATAAATTAGCATCTGCAAACCCTGAGCAAGCAGAGTTGAAGACTCAGGAAACGGGGAAGGG-CATAGATAAGGAAACTGAGAAAAGACATAAGAATAAGGTCTACTTCAATTTTGCCTAGATTTGGCCATGACTAGAATCTGACTTCTATTAATTCTGTCTATAATGTAACATAGTGGTAACCCATCTTAAAGATCTCCTGTCACTGCAGAAA
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77382072 212 - 124281992 TTGGATGGTTGTCACTAACAATATGAATGTAAATGAGCTTTTTTCCTAAGTGAGAGGAAATAAATTAGCACCTGAAAACCCTGAGC-----------AAGACTCAGGAAAGGGGGAAAGGACATAGATAACAAAGCTGGGAAGGGACAATAGAATAATGTCTACTTCAATTTTGC-------------------------------------------------TGTAACATAGTGGTAACCCATCTTAAAGAGCTCCTGTCACTGCAGAAA
i calJac3.chr9              C 0 I 638
e mm10.chr10                126837653 2855 + 130694993 I
e canFam3.chr10              67287519   5 -  69331447 I

a score=177346.000000
s hg38.chr12_GL383550v2_alt     58234 56 +    169178 CTCCACCCCATGGTCCCTATTCATATAACATGTATTACAATATATCAGATTGGAct
s panTro4.chr12              31294478 56 + 134246214 CTCCACCCCATGGTCCCTATTCATATAACATGTATTACAATATATCAGATTGGAct
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78486682 56 - 136387465 CTCCACCCCATGGTACCTATTCATATAACATGTATTACAATATGTCAGATTGGAct
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54705040 56 + 123690457 CTCCACCCCATGGTCCCTATTCATATAACATATATTACAATATGTCAGATTGGACT
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79600665 56 - 134985053 CTCCACCTAATGGTCCCTATTCATATAACATGTATTACAATATGTCAGACTGGACT
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80702006 56 - 137757926 CTCCACCCAATGGTCCCTATTCATATAACATGTATTACAATATGTCAGACTGGACT
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78647950 56 - 132286798 CTCCACCCAATGGTCCCTATTCATATAACATGTATTACAATATGTCAGACTGGACT
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74574903 56 - 128539186 CTCCACCCAATGGTCCCTATTCATATAACATGTATTACAATATGTCAGATTGGACT
i chlSab2.chr11             C 0 I 6828
s calJac3.chr9               77382922 56 - 124281992 CTCCACTCAATGGTCCCTATTCATATAACATGTATTACAATATGTCAGATTGGACT
i calJac3.chr9              I 638 C 0
e mm10.chr10                126837653 2855 + 130694993 I
e canFam3.chr10              67287519  5 -  69331447 I

a score=2800.000000
s hg38.chr12_GL383550v2_alt     58290 1 +    169178 g
s panTro4.chr12              31294534 1 + 134246214 g
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78486738 1 - 136387465 g
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54705096 1 + 123690457 G
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79600721 1 - 134985053 G
i rheMac3.chr11             C 0 I 6054
s macFas5.chr11              80702062 1 - 137757926 G
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78648006 1 - 132286798 G
i papAnu2.chr11             C 0 C 0
s calJac3.chr9               77382978 1 - 124281992 G
i calJac3.chr9              C 0 I 14647
e mm10.chr10                126837653 2855 + 130694993 I
e canFam3.chr10              67287519 5 -  69331447 I
e chlSab2.chr11              74574959 6828 - 128539186 I

a score=2277.000000
s hg38.chr12_GL383550v2_alt     58291 3 +    169178 cat
s panTro4.chr12              31294535 3 + 134246214 cat
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78486739 3 - 136387465 cat
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54705097 3 + 123690457 AAT
i nomLeu3.chr11             C 0 I 11378
s macFas5.chr11              80702063 3 - 137757926 AAT
i macFas5.chr11             C 0 I 6819
s papAnu2.chr11              78648007 3 - 132286798 AAT
i papAnu2.chr11             C 0 I 6786
e mm10.chr10                126837653 2855 + 130694993 I
e canFam3.chr10              67287519 5 -  69331447 I
e calJac3.chr9               77382979 14647 - 124281992 I
e chlSab2.chr11              74574959 6828 - 128539186 I
e rheMac3.chr11              79600722 6054 - 134985053 I

a score=1726856.000000
s hg38.chr12_GL383550v2_alt     58294 6437 +    169178  
s panTro4.chr12              31294538 6434 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78486742 6424 - 136387465  
i ponAbe2.chr12             C 0 C 0
e mm10.chr10                126837653 2855 + 130694993 I
e canFam3.chr10              67287519    5 -  69331447 I
e calJac3.chr9               77382979 14647 - 124281992 I
e chlSab2.chr11              74574959 6828 - 128539186 I
e papAnu2.chr11              78648010 6786 - 132286798 I
e macFas5.chr11              80702066 6819 - 137757926 I
e rheMac3.chr11              79600722 6054 - 134985053 I
e nomLeu3.chr11              54705100 11378 + 123690457 I

a score=522.000000
s hg38.chr12_GL383550v2_alt     64731 9 +    169178 aaaaaaatg
s panTro4.chr12              31300972 9 + 134246214 aataaaata
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78493166 6 - 136387465 taaaaa---
i ponAbe2.chr12             C 0 C 0
s macFas5.chr11              80708885 9 - 137757926 aagaactta
i macFas5.chr11             I 6819 C 0
s papAnu2.chr11              78654796 9 - 132286798 aagaactta
i papAnu2.chr11             I 6786 C 0
e mm10.chr10                126837653 2855 + 130694993 I
e canFam3.chr10              67287519 5 -  69331447 I
e calJac3.chr9               77382979 14647 - 124281992 I
e chlSab2.chr11              74574959 6828 - 128539186 I
e rheMac3.chr11              79600722 6054 - 134985053 I
e nomLeu3.chr11              54705100 11378 + 123690457 I

a score=739140.000000
s hg38.chr12_GL383550v2_alt     64740 396 +    169178 aaatagaataaccatttgacctagcaatcccattattaggtatatgcccaatggaacataaatcatactacataatgatacatacaTGCtgatatggtatggctctgtgtccccacccaaatctcatgtcaaattttaaccctcacatgtcaggggagggacttgatggga-gtgattagatcatgggggtggatttcccccatgctggtctcatgatattgactgagttctcacaagatctgatggtttaaaagtgtggcacttctcccctcactctatctctcctgccaccatgtaagatgtgccttgctttcctttcaccttctgccatgattgtaagtttcctgaggcctccccagctatgtggaactgtaagtcagttagaactcttttctt
s panTro4.chr12              31300981 396 + 134246214 aaatagaataaccatttgacctagcaatcccattattaggtatatgcccaatggaatataaatcatactacataatgatacatacatgctgatatggtatggctctgtgtccccacccaaatctcatgtcaaattttaaccctcacatgtcaggggagggacttgatggga-gtgattagatcatgggggtggatttcccccatgctggtctcatgatattgactgagttctcacaagatctgatggtttaaaagtgtggcacttctcccctcactctatctctcctgccaccatgtaagatgtgccttgctttcctttcaccttctgccatgattgtaagtttcctgaggcctccccagctatgtggaactgtaagtcagttagaactcttttctt
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78493172 396 - 136387465 aaatagaacgaccatttgacctagcaatcccattattaggtatatgcccaatggaatataaatcatactacataatgacacatacatgctgatatggtttggctctgtgtccccacccaaatttcatgtcaaattgtaaccctcacatgtcaggggagggacttgatgggaggtgattagatcatgggggtggattt-ccccatgctggtctcatgatattgactgagttcccacaagatctgatggtttaaaagtgtggcacttctcccctcactctgtctctcctgccaccatgtaagatgtgccttgctttccctttaccttctgccatgattgtaagtttcctgaggcctccccagctatgtggaactgtaagtcagttagaactcttttctt
i ponAbe2.chr12             C 0 I 4272
s rheMac3.chr11              79606776 397 - 134985053 aaatagaactaccatttaacctagcaatcccattattaggtatatacccaatggaatttaaatcttactacataatgacacatacatgctgatatggtttggctctgtgtccccacccaaatctcatgtcaaattgtaaccctcacatgtcagggaaaggacttgatgggaggtgattgggtcatgggggtggatttcccccatgctggtctcatgatattgactgagttctcacaagatctgatggtttaaaagtgtggcacttctcccctcactctgtctctcctcccaccatgtaagatgtgccttgctttccattcaccttctgccatgattgtaagtttcctgaggcctccccagctatgtagaactgtaagtcaattagaactctttcctt
i rheMac3.chr11             I 6054 C 0
s macFas5.chr11              80708894 397 - 137757926 aaatagaactaccatttaacctagcaatcccattattaggtatatacccagtggaatttaaatcttactacataatgacacatacatgctgatatggtttggctctgtgtccccacccaaatctcatgtcaaattgtaaccctcacatgtcagggaaaggacttgatgggaggtgattgggtcatgggggtggatttcccccatgctggtctcatgatattgactgagttctcacaagatctgatggtttaaaagtgtggcacttctcccctcactctgtctctcctcccaccatgtaagatgtgccttgctttccattcaccttctgccatgattgtaagtttcctgaggcctccccagctatgtagaactgtaagtcaattagaactctttcctt
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78654805 397 - 132286798 aaatagaactaccatttaacctagcaatcccattattaggtatatacccaatggaatTTAAATCTTACTACATAATGACACATacatgctgatatggtttggctctgtgtccccacccaaatctcatgtcaaattgtaacccTCACATGTCAGGGAAAGGActtgatgggaggtgattgggtcatgggggtggatttcccccatgctggtctcatgatattgactgagttctcacaagatctgatggtttaaaagtgtggcacttctcccctcactctgtctctcctcccaccatgtaagatgtgccttgctttcccttcaccttctgccatgattgtaagtttcctgaggcctccccagctatgtggaactgtaagtcaattagaactctttcctt
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74581787 397 - 128539186 aaatagaactaccatttaacctagcaatcccattattaggtatatacccagtggaatttaagtcatactacgtaatgacacatacatgctgatatggtttggctctgtgtccccacccaaatctcatgtcaaattgtaaccctcacatgtcagggaaaggacttgatgggaggtgattgggtcatgggggtggatttcccccatgctggtctcatgatattgactgagttctcacaagatctgatggtttaaaagggtggcacttctcccctcactctatctctcctcccaccatgtaagatgtgccttgctttcccttcaccttctgccatgattgtaagtttcctgaggcctccccagctatgtggaactgtaagtcaattagaactctttcatt
i chlSab2.chr11             I 6828 C 0
e mm10.chr10                126837653 2855 + 130694993 I
e canFam3.chr10              67287519   5 -  69331447 I
e calJac3.chr9               77382979 14647 - 124281992 I
e nomLeu3.chr11              54705100 11378 + 123690457 I

a score=310192.000000
s hg38.chr12_GL383550v2_alt     65136 240 +    169178 tat-agttacctagtttcaggtagttctttttatagcagtgtgaaaattggttaatatagaaaattggtaccagcagagtgaaccactgttataaagacacctgaaaagtggaaatgactttggaatggggtaatggacagaggtttgtacagtttggagggcttagaagaagataggaagatgtgggaaagtttggaaccttctagagacttgttgaatggttttgaccaaaatgttcat
s panTro4.chr12              31301377 240 + 134246214 tat-agttacctagtttcaggtagttctttttatagcagtgtgaaaattggttaataTGGAaaattggtaccagcagagtgaaccactgctataaagacacctgaaaagtggaaatgactttggaatggggtaatggacagaggtttgtacagtttggagggcttagaagaagataggaagatgtaggaaagtttggaaccttctagagacttgttgaatggttttgaccaaaatgttcat
i panTro4.chr12             C 0 C 0
s rheMac3.chr11              79607173 241 - 134985053 tataagttacccagtttcaggtaattctttttatagcagtgtgaaaattgactaatataGAaaactggtaccagcagagtgaaccactgctataaagatacctgaaaagtggaaattactttggaatggggtaatggacagaggtttgaacagtttggagggctcagaagaagacaggaagatgtgggaaagtttggaactttctagagacttgttcaatggttttgacaaaaatgctcat
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80709291 241 - 137757926 tataagttacccagtttcaggtaattctttttatagcagggtgaaaattgactaatatagaaaactggtaccagcagagtgaaccactgctataaagatacctgaaaagtggaaattactttggaatggggtaatggacagaggtttgaacagtttggagggctcagaagaagataggaagatgtgggaaagtttggaactttctagagacttgttcaatggttttgacaaaaatgctcat
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78655202 240 - 132286798 tataagttacccagtttcaggtaattctttttata-cagtgtgaaaattgactaatatagaaaactggtaccagcagagtgaaccactgctataaagatacctgaaaagtGGAAATTACTTTGGAATGGGATAATGGACAGAGGtttgaacagtttggagggctcagaagaagataggaagatgtgggaaagtttggaactttctagagacttgttcaatggttttgacaaaaatgctcat
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74582184 241 - 128539186 tataagttacccagtctcaggtaattctttttatggcagtgtgaaaattgactaatatagaaaactggtaccagcagagtgaaccactgctataaagatacctgaaaattggaaatgactttggaatggggtaatggacagaagtttgaacagtttggagggctcagaagaagataggaagatgtgggagagtttggaactttctagagacttgttcaatggttttgacaaaaatgctcat
i chlSab2.chr11             C 0 C 0
e mm10.chr10                126837653 2855 + 130694993 I
e canFam3.chr10              67287519   5 -  69331447 I
e calJac3.chr9               77382979 14647 - 124281992 I
e nomLeu3.chr11              54705100 11378 + 123690457 I
e ponAbe2.chr12              78493568 4272 - 136387465 I

a score=92951.000000
s hg38.chr12_GL383550v2_alt     65376 103 +    169178 agtgatatggacaataaagtccagtctgaggtggtctcatctagagatgaggaacttattgggaattggagtaaaagtcactctttctatgctttagcaaaga
s rheMac3.chr11              79607414 103 - 134985053 agggatatggacaataaagtccaagctgaggtggtctcatctagagatgaggaacttattggaaattggagtaaaagtcactcttgctatgctttagcaaaga
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80709532 103 - 137757926 agggatatggacaataaagtccaagctgaggtggtctcatctagagatgaggaacttattggaaattggagtaaaagtcactcttgctatgctttagcaaaga
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78655442 103 - 132286798 agggatatggacaataaagtccaagctgaggtggtctcatctagagatgaggaacttattggaaattggagtaaaagtcactcttgctatgctttagcaaaga
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74582425 103 - 128539186 agtgatatggacaataaagtccaagctgaggtggtctcatctggagatgaggaacttattggaaattggagtaaaagtcactcttgctatgctttagcaaaga
i chlSab2.chr11             C 0 C 0
e mm10.chr10                126837653 2855 + 130694993 I
e canFam3.chr10              67287519   5 -  69331447 I
e calJac3.chr9               77382979 14647 - 124281992 I
e nomLeu3.chr11              54705100 11378 + 123690457 I
e ponAbe2.chr12              78493568 4272 - 136387465 I
e panTro4.chr12              31301617   0 + 134246214 C

a score=2968347.000000
s hg38.chr12_GL383550v2_alt     65479 2341 +    169178  
s panTro4.chr12              31301617 2342 + 134246214  
i panTro4.chr12             C 0 C 0
s rheMac3.chr11              79607517 2361 - 134985053  
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80709635 2321 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78655545 2321 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74582528 2282 - 128539186  
i chlSab2.chr11             C 0 C 0
e mm10.chr10                126837653 2855 + 130694993 I
e canFam3.chr10              67287519    5 -  69331447 I
e calJac3.chr9               77382979 14647 - 124281992 I
e nomLeu3.chr11              54705100 11378 + 123690457 I
e ponAbe2.chr12              78493568 4272 - 136387465 I

a score=1427527.000000
s hg38.chr12_GL383550v2_alt     67820 794 +    169178  
s panTro4.chr12              31303959 795 + 134246214  
i panTro4.chr12             C 0 C 0
s nomLeu3.chr11              54716478 795 + 123690457  
i nomLeu3.chr11             I 11378 C 0
s rheMac3.chr11              79609878 793 - 134985053  
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80711956 799 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78657866 793 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74584810 792 - 128539186  
i chlSab2.chr11             C 0 C 0
e mm10.chr10                126837653 2855 + 130694993 I
e canFam3.chr10              67287519   5 -  69331447 I
e calJac3.chr9               77382979 14647 - 124281992 I
e ponAbe2.chr12              78493568 4272 - 136387465 I

a score=2202319.000000
s hg38.chr12_GL383550v2_alt     68614 936 +    169178  
s panTro4.chr12              31304754 939 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78497840 935 - 136387465  
i ponAbe2.chr12             I 4272 I 29
s nomLeu3.chr11              54717273 936 + 123690457  
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79610671 932 - 134985053  
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80712755 940 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78658659 941 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74585602 949 - 128539186  
i chlSab2.chr11             C 0 C 0
e mm10.chr10                126837653 2855 + 130694993 I
e canFam3.chr10              67287519   5 -  69331447 I
e calJac3.chr9               77382979 14647 - 124281992 I

a score=71931.000000
s hg38.chr12_GL383550v2_alt     69550 38 +    169178 taagatgtgccttgcttccccttcaccttctgccatga
s panTro4.chr12              31305693 38 + 134246214 taagatgtgccttgcttccccttcaccttctgccatga
i panTro4.chr12             C 0 C 0
s nomLeu3.chr11              54718209 38 + 123690457 taagatgtgccttgcttcctcttcaccttctgccatga
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79611603 38 - 134985053 taagatgtgccttgcttccccttcacctcctgccatga
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80713695 38 - 137757926 taagatgtgccttgcttccccttcacctcctgccatga
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78659600 38 - 132286798 taagatgtgccttgcttccccttcacctcctgccatga
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74586551 38 - 128539186 taagatgtgccttccttccccttcacctcctgccgtga
i chlSab2.chr11             C 0 C 0
e mm10.chr10                126837653 2855 + 130694993 I
e canFam3.chr10              67287519  5 -  69331447 I
e calJac3.chr9               77382979 14647 - 124281992 I
e ponAbe2.chr12              78498775 29 - 136387465 I

a score=187339.000000
s hg38.chr12_GL383550v2_alt     69588 79 +    169178 ttgtagatttcctgaggcctccccagccatccataactgtgagtcaattagaactcttttatttataaattacccaggt
s panTro4.chr12              31305731 79 + 134246214 ttgtagatttcctgaggcctccccagccatccataactgtgagtcaattagaactcttttatttataaattacccaggt
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78498804 78 - 136387465 ttgtagatttcctgaggcctcctcagccatgcataactgtgagtcaattagaactcttttatttataaattaccca-gt
i ponAbe2.chr12             I 29 C 0
s nomLeu3.chr11              54718247 78 + 123690457 ttgtagatttcctgaggcctccccagccatgcataactgtgagtcaactagaattcttttatttataaattaccca-gt
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79611641 78 - 134985053 ctgtagatttcctgaggcctccccagccatgcataactgtgagtcaattagaattcttttatttataaattaccca-gt
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80713733 78 - 137757926 ctgtagatttcctgaggcctccccagccatgcataactgtgagtcaattagaattcttttatttataaattaccca-gt
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78659638 77 - 132286798 ttgtagatttcctgaggccttcccagccatgcataactgtgagtcaattagaattcttttatttataaattaccca-g-
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74586589 78 - 128539186 ctgtagatttcctgaggcctccccagccatgcataactgtgagtcaattagaactcttttatttataaattactca-gt
i chlSab2.chr11             C 0 C 0
e mm10.chr10                126837653 2855 + 130694993 I
e canFam3.chr10              67287519  5 -  69331447 I
e calJac3.chr9               77382979 14647 - 124281992 I

a score=2766969.000000
s hg38.chr12_GL383550v2_alt     69667 975 +    169178  
s panTro4.chr12              31305810 979 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78498882 973 - 136387465  
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54718325 969 + 123690457  
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79611719 975 - 134985053  
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80713811 972 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78659715 968 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74586667 973 - 128539186  
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77397626 980 - 124281992  
i calJac3.chr9              I 14647 C 0
e mm10.chr10                126837653 2855 + 130694993 I
e canFam3.chr10              67287519   5 -  69331447 I

a score=2508175.000000
s hg38.chr12_GL383550v2_alt     70642 720 +    169178  
s panTro4.chr12              31306789 720 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78499855 717 - 136387465  
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54719294 720 + 123690457  
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79612694 718 - 134985053  
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80714783 718 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78660683 718 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74587640 718 - 128539186  
i chlSab2.chr11             C 0 I 182
s calJac3.chr9               77398606 721 - 124281992  
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67287524 777 -  69331447  
i canFam3.chr10             I 5 C 0
e mm10.chr10                126837653 2855 + 130694993 I

a score=87120.000000
s hg38.chr12_GL383550v2_alt     71362 22 +    169178 taaagtcaactgattagggact
s panTro4.chr12              31307509 22 + 134246214 taaagtcaactgattagggact
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78500572 22 - 136387465 taaagtcaactgattagggact
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54720014 22 + 123690457 ttaagtcaactgattagggatt
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79613412 22 - 134985053 taaagtcaactgattagggact
i rheMac3.chr11             C 0 I 190
s macFas5.chr11              80715501 22 - 137757926 TAAAGTCAACTGATTAGGGACT
i macFas5.chr11             C 0 I 190
s papAnu2.chr11              78661401 22 - 132286798 taaagtcaactgattagggaCT
i papAnu2.chr11             C 0 I 190
s chlSab2.chr11              74588540 22 - 128539186 taaagtcaactgattagggact
i chlSab2.chr11             I 182 I 8
s calJac3.chr9               77399327 22 - 124281992 taaagtcaactgattagggact
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67288301 22 -  69331447 taaagtcaactatttagggact
i canFam3.chr10             C 0 C 0
e mm10.chr10                126837653 2855 + 130694993 I

a score=49176.000000
s hg38.chr12_GL383550v2_alt     71384 12 +    169178 tcaattacatct
s panTro4.chr12              31307531 12 + 134246214 tcaattacatct
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78500594 12 - 136387465 tcaattacatct
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54720036 12 + 123690457 tcaattacatct
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79613624 12 - 134985053 tcaattacatct
i rheMac3.chr11             I 190 C 0
s macFas5.chr11              80715713 12 - 137757926 tcaattacatct
i macFas5.chr11             I 190 C 0
s papAnu2.chr11              78661613 12 - 132286798 tcaattacatct
i papAnu2.chr11             I 190 C 0
s chlSab2.chr11              74588570 12 - 128539186 tcaattacatct
i chlSab2.chr11             I 8 C 0
s calJac3.chr9               77399349 12 - 124281992 tcaattacatct
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67288323 12 -  69331447 ttaattacatct
i canFam3.chr10             C 0 I 177
e mm10.chr10                126837653 2855 + 130694993 I

a score=1516763.000000
s hg38.chr12_GL383550v2_alt     71396 467 +    169178 gcaaaatcccttcacagcagcacctagatttgtgtttgactgaatgactgggagaaggG----gtgtgtgtgtgtgtgtgtgtgtgtgtgtgt----------gCACACTacaatacggctgctgctgcttttctatcctcccactctcaagagacaatgtctctagcagctcactctatctggaaacacactagaaagggaattctgaggaatattgttcaacctcaccaagttgacacatcccaaagccatcacGcactctcaaattcctgatcaacagaaactacaaagg---atacattttgatccctgttttaaacctttaggttttttagataatttgttaggcagcagtatataactgatacaGGTTTGATTGCACATGTTATCGGGTATCAAGTGTAACTACTAATTACAAGGGTAATTAC-TAAGGAAAAGCTGTTGCCTGAAGTCACCTGGGTTTTATTAGGTTTGTGCTTAATG
s panTro4.chr12              31307543 463 + 134246214 gcaaaatcccttcacagcagcacctagatttgtgtttgactgaatgactgggagaaggG----gtgtgtgtgtgtgtgtgtgtgtgtgtg--------------CACACTacaatatggctgctgctgcttttctatcctcccactctcatgagacaatgtctctagcagcccactctatctggaaacacactagaaagggaattctgaggaatattgttcaacctcaccaagttgacgcatcccaaagccatcacGcactctcaaattcctgatcaacagaaactacaaagg---atacattttgatccctgttttaaacctttaggttttttagataatttgttaggcagcagtatataactgatacaGGTTTGATTGCACAGGTTATCTGGTATCAAGTGTAACTACTAATTACAAGGGTAATTAC-TAAGGAAAAGCTGTTGCCTGAAGTCACCTGGGTTTTATTAGGTTTGTGCTTAATG
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78500606 471 - 136387465 gcaaaatcccttcacagcagcacctagatttgtgtttgactgaatgactgggagaagTG----gtgtgtgtgtgtgtgtgcgtgtgtgtgtgt------gtgCGCACACTacaatatggctgctgcttcttttctgtcctcccactctcatgagacaatatctctagcagcccactctatctggaaacacactagaaagggaattctgaggaatattgttcaacttcaccaagttgacacatcccaaagccatcacGcactctcaaattcctgatcaacagaaactacaaagg---ataaattttgatccctgttttaaacctttaggttttttagataatttgttaggcagcagaatataactgatacaGGTTTGATTGCACAGGTTATCTGGAATCAAGTGTAACTACTAACTACAAGGGTAATTAC-TAAGGAAAAGCTGTTGCCTGAAGTCACCTCGGTTTTATTAGGTTTGTACTTAATG
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54720048 474 + 123690457 gtaaaatcccttcaaagcaggacctagatttgtgtttgactgaatgactgggagaaggG----gtgtgtgtgtgcgtgtgtgtgtgtgtgtgt--gcgtgtgtgCACGCTacaatatggctgctgcttcttttctatcctcccactctcatgagacaatatctctagcagcccactctatctagaaacacactagaaagggaattctgaggaatattgttcaacctctccaagttgacacatcccaaagccatcacGcactctcaaattcctgatcaacagaaactacaaagg---ataaattttgatccctgttttaaaccttt-ggttttttagataatttgttaggcagcagtatataactgatataGGTTTGATTGCACAGGTTATCTGGAATCAAGTGTAACTACTAACTACAGGGGTAATTAC-TAAGGAAAAGCTATTGCCGGAAGTCACTTGGGTTTTATTAGGTTTGTACTTAATG
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79613636 473 - 134985053 gcaaaatcccttcacagcagcacctagatttgtgtt----tgaatgactgggagaaggG----gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgCTacaatatggctgctgcatcttttctatcctccccctctcatgagacagtatctctagttgcccactctatctggaaacacactagaaagtgaattctgaggaatattgttcaacctcaccaagttgacacatcccaaagccaccacGcactctcaaattcctgaccaacagaaactacaaaga---ataaattttgatccctgttttaaacctctgggttttttagataatttgttaggcagcagtatgtaactgatacaGGTTTGATTGAACAGGTTATCTGGAATCAAGTGTAACTACTAACTAGAAGGGTAATTAC-TAAGGAAAAGCTGTTGCCTGAAGTCACCTGGGTTTTATTAGGTTTGTACTTAATG
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80715725 473 - 137757926 gcaaaatcccttcacagcagcacctagatttgtgtt----tgaatgactgggagaaggG----gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtATGCTacaatatggctgctgcatcttttctatcctccctctctcatgagacagtatctctagttgcccactctatctggaaacacactagaaagtgaattctgaggaatattgttcaacctcaccaagttgacacatcccaaagccaccacGcactctcaaattcctgaccaacagaaactacaaaga---ataaattttgatccctgttttaaacctctgggttttttagataatttgttaggcagcagtatgtaactgatacaGGTTTGATTGAACAGGTTATCTGGAATCAAGTGTAACTACTAACTAGAAGGGTAATTAC-TAAGGAAAAGCTGTTGCCTGAAGTCACCTGGGTTTTATTAGGTTTGTACTTAATG
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78661625 477 - 132286798 gcaaaatcccttcacagCAGCACCTAGATTTGTGTT----TGAATGACTGggagaaggggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgctacAATATGGCTGCTGCATCTTTTCTATCCTCCCCCTCTCATGAGACAGTATCTCTAGTTGCCCACTCTATCTGGAAACACACTAGAAAGTGAATTCTGAGGAATATTGTTCAACCTCACCAAGTTGACACATCCCAAAGCCACCATGcactctcaaattcctgaccaaCAGAAACTACAAAGA---ATAAATTTTGATCCCTGTTTTAAACCTCTGGGTCTTTTAGATAATTTGTTAGGCAGCAGTATGTAACTGATACAGGTTTGATTGAACAGGTTATCTGGAATCAAGTGTAACTACTAACTAGAAGGGTAATTAC-TAAGGAAAAGCTGTTGCCTGAAGTCACCTGGGTTTTATTAGGTTTGTACTTAATG
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74588582 469 - 128539186 gcaaaatcccttcacagcagcacctagatttgtgtt----tgaatgaCTGGgtgt--------gtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgCATGCTacaatatggctgctgcatcttttctatcctcccgctctcatgagacagtatctctagttgcccactctatctggaaacacactagaaagggaattctgaggaatattgttcaacctcaccaagttgacgcagcccaaaaccatcaagcactctcaaattcctgaccaacagaaactacaaagg---ataaattttgatccctgttttaaacctttgggttttttagataatttgttaggcagcagtatgtaactgatacaGGTTTGATTGAACAGGTTATCTGGAATCAAGTGTAACTACTAACTAGAAGGGTAATTAC-TAAGGAAAAGCTGTTGCCTGAAGTCACCTGGGTTTTATTAGGTTTGTACTTAATG
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77399361 444 - 124281992 gcaaaatcctttcatggcagcacagagatttgtgtttcactgaatgactggaagaaggt----gtgtgtGTTTG----------------------------------CTacaatatggctgttgcttctttttcatcctcccgctctcatgagacagtatctctagtagcccactgcatctggaaacacacttgaaagggacttctgaggaacactgttcaacctcaccaagttgacacatgccaaatccatcatacactctcaaattcctgaccaacagaaactacaaagg---ataaattttaatcccttttttaaacctttgggttttttagataatttgttacagagtagtatataactaatacaGTTTTGATTGAACAGGTTATCTGGAATCAAGTGTAACTGTGAACTACAAGTGTAATTACTTAAGGAGAAGCTGTTGCCTGAAGTTACCTGGGTTTTATTAGGTTTGTACTTAATA
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67288512 400 -  69331447 gcaaaatcttttcccagcagcaccaagattagtgtttgattgaataataggggga---g----atatgtgAG------------------------------------CTACAAGCTTgttgctgctgctcttctaccctccagctctcacaagatacca-ctccagtcacccacactatctggaaacatgatagaaaggaaattctggggaatattgcatagtctagccaagctgacatatcc-------------------caaattcctgacccactgaaactataaaagataataaatatctgtcactgttgtaagcctttggg--ttttaggtaatttgttacacagctgtagagacctaatacaCATTTGACTGAACCGATTATCTGGGATCAAGTATAACAAC--------------------TAATTAAAAGCTCTTGCCTGGAGTCACTTGAGTTCTATTAGATTTGTACTTAATT
i canFam3.chr10             I 177 I 193
e mm10.chr10                126837653 2855 + 130694993 I

a score=1262967.000000
s hg38.chr12_GL383550v2_alt     71863 387 +    169178 AGTTCAAATAGTGTTTGTGGATAT--AATATTTGTGTGTAAGTTTGG-----TTTTGTGTATGGGG---GCTTATTTGTGGGTGTGGGTAGGTTTAGATACGCTCTTCAACAGAATCGGACTAGCAGAATAACAAAGCACAAGAAGCATGTCAAGTAGAACATCTTGATTTTTCTCTAAAATACCTGATGGGTCTTA-ATATTTTCTGGAGAATAAAGT------AAAAAAGACTTAGAAGCCTAAATTAGCCCAAA--CCCCGACTTCAAGTAGCCTCA--CCTTAAAATGATCTTACAACATGAggtgtgatgtaaaggggcacagaccttacagtcagacacgtctgggctccggctccaactccatctctcaccaatgatgttcacttggccactttacataac
s panTro4.chr12              31308006 387 + 134246214 AGTTCAAATAGTGTTTGTGGATAT--AATATTTGTGTGTAAGTTTGG-----TTTTGTGTATGGGG---GCTTATTTGTGGGTGTGGGTAGGTTTAGATACGCTCTTCAACAGAATCAGACTAGCAGAATAACAAAGCACAAGAAGCATGTCAAGTAGAACATCTTGATTTTTCTCTAAAATACCTGATGGGTCTTA-ATATTTTCTGGAGAATAAAGT------AAAAAAGACTTAGAAGCCTAAATTAGCCCAAA--CCCCGACTTCAAGAAGCCTCA--CCTTAAAATGATCCTACAACATGAggtgtgatgtaaaggagcacagaccttacagtcagacacatctgggctccggctccaactccatctctcaccaatgatgttcacttggccactttacataac
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78501077 387 - 136387465 AATTCAAATAGTGTTTGTGGATAT--AATATTTGTGTGTAAGTTTGG-----TTTTGTGTATGGGG---GCTTATTTGTGGGTGTGGGTAGGTTTAGATATGGTCTTCAACAGAATCAGACTAGCAGAATAACAAAGTACAAGAAGCATGTCAGGTAGGACATCTTGATTTTTCTCTAAAATACCTGATGGGTCTTA-ATATTTTCTGGAGAATAAAGT------AAAAAAGACTTAGAAGTCTAAATTAGCCCAAA--CCACGACTTCAAGATGCCTCA--CCTTAAAATGATCCTACAACATCAgatgtgatgtaaaggagcacagaccgcacagtcagacacgtctgggctccagctccaactccatctctcaccaatgatgttcacttggccactttacataac
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54720522 387 + 123690457 AATTCAAATAGTGTTTGTGGATAT--AATATTTGTGTGTAAGTTTGG-----TTTTGTATATGGGG---GCTTATTTGTGGGTGTGGGTAGGTTTAGATATGGTCTTCAACAGAATCAGACTAGCAGAATAACAAAGTACAAGAAGCATGTCAGGTAGAACATCTTGATTTTTCTCTAAAATACCTGATGGGTCTTA-ATATTTTCTGGAGAATAAAGT------AAAAAAGACTTAGAAGCCTAAATTAGCCCGAA--CCCTGACTTCAAGATGCCTCA--CCTTAAAATGATCCCACAACAtgaggtatgatgtaaaggagaccagaccgtacagtcagacacatttgggctccggctccaactccgtctctcaccaatgatgttcacttggccactttacataac
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79614109 386 - 134985053 AATTCAAATAGTGTGTGTGGATAT--AACATTTGTGTGTAAGTTTGG-----TTTTGTAGATGGGG---GCTTATTTGTGGGTGTGGATAGGTTTAGGTATGGTCTTCAACAGAATCAGGCTAGCAGAATAACAAAGTGCAAGAAGCATGTCAGGTAGAACATTTTGATTTTTCTCTGAAATACCTGATGGATCTTA-ATATTTTTTGGAGAATAAAGT------AAAAAATACTTGGAAGACTAAATTAGCCCAAA---CCCGACTTCAAGATGCCTCA--CCCTAAAATGATCCTACAACATGAggtgtgacgtaaaggagcacagaccgtacagtcagacatgtctgggccctggctccaactccgtctctcaccaatgatgttcacttgaccactttacataac
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80716198 386 - 137757926 AATTCAAATAGTGTGTGTGGATAT--AACATTTGTGTGTAAGTTTGG-----TTTTGTAGATGGGG---GCTTATTTGTGGGTGTGGATAGGTTTAGGTATGGTCTTCAACAGAATCAGGCTAGCAGAGTAACAAAGTGCAAGAAGCATGTCAGGTAGAACATTTTGATTTTTCTCTGAAATACCTGATGGATCTTA-ATATTTTTTGGAGAATAAAGT------AAAAAATACTTGGAAGACTAAATTAGCCCAAA---CCCGACTTCAAGATGCCTCA--CCCTAAAATGATCCTACAACATGAggtgtgacgtaaaggagcacagaccgtacagtcagacatgtctgggccctggctccaactccgtctctcaccaatgatgttcacttgaccactttacataac
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78662102 386 - 132286798 AATTCAAATAGTGTGTGTGGATAT--AACATTTGTGTGTAAGTTTGG-----TTTTGTAGATGGGG---GCTTATTTGTGCGTGTGGATAGGTTTAGGTATGGTCTTCAACAGAATCAGGCTAGCAGAATAACAAAGTGCAAGAAGCATGTCAGGTagaacattttgatttttctctgaaaTACCTGATGGATCTTA-ATATTTTTTggagaataaagt------aaaaaatacttGGAAGACTAAATTAGTCCAAA---CCCGACTTCAAGATGCCTCA--CCCTAAAATGATCCTACAACATGAGGTGTGACGTAAAGGAGCACAGACCGTACAGTCAGACATGTCTGGGCCCTGGTTCCAACTCCATCTCTCACCAATGATGTTCACTTGACCACTTTACATAAC
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74589051 387 - 128539186 AATTCAAATAGTGTGTGTGGATAT--AACATTTGTGTGTAAGTTTGG-----TTTTGTAGATGGGG---GCTTATTTGTGGGTGTGGATAGGTTTAGATATTGTCTTCAACAGAATCAGGCTAGCAGAATAACAAAGTGCAAGAAGCATGTCAGGTAGGACATTTTGATTTTTCTCTGAAATACCTGATGGATCTTA-ATATTTTCTGGAGAATAAAGT------AAAAAATACTTGGAAGACTAAATTAGCCCAAA--CCCCGACTTCAAGATGCCTCA--CCCTAAAATGATCCTACAACATGAggtgtgacgtaaaggagcacagaccatatggtcagacatgtctgggccctggctccaactccgtctctcaccaatgatgttcacctgaccactttacataac
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77399805 382 - 124281992 AATTCAAATCGTACTTGTGGGTAA--AATATTTGTGTGTAAGCTTGGATTTATTTTGTATATGGGG---------------GTGTGGATAGGTATAGATACGGTTTTCAACAGAATCAGACTAGCAGAATAACAAAGTGCAGGAAGCATGTCAGGTAGGACGTCTTGATTTTTCTCTAAAATACCTGATGGG---TA-ATATTTACAGGAGAATAAAGTAAAAAAAAAAAAGACTTAGAAGCTTAAATTAGCCCAAA--CCCCAACTCTAAGATGCCTCA--CCCTAAAATGATCCTACAACATGAggtgtgatgtaaaggagcagagactgtacagtccgacacgtctgggctctggctctaactccatctctcaccaataatgtttccttggccacttgacat-ac
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67289105 374 -  69331447 AATTCAAATAGTGATTGTGAGTATAGAATATGTGTGTGTAGGTGTGG-----C--------TGGGGTGTGCTTATTTATGGATGTGGTTGGTTTTAGATACAGCCTTCCTCAGAATCAGACTAGCAGAATAACAAAGTACAGGAAG-------------ACATTTTGA-TTGTCTCTCAAACAACCCATGAGTCTTAGAAATGTGCTGGGGAATAAGGT------AAAAAAGACATATAAACTTCAGTTAACCCGACCTCCCTGACCT-ACAAGGCTTCAACCCTGAAATTGATCCTCTAACCTTAGATGAGATATgaaagggaacagaagtcatagtcagacacacctggggtcttgtcccgactccatctcttaccagttgtgtgacctcatccactttacataac
i canFam3.chr10             I 193 I 1229
e mm10.chr10                126837653 2855 + 130694993 I

a score=2336754.000000
s hg38.chr12_GL383550v2_alt     72250 692 +    169178  
s panTro4.chr12              31308393 692 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78501464 692 - 136387465  
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54720909 694 + 123690457  
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79614495 699 - 134985053  
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80716584 699 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78662488 699 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74589438 687 - 128539186  
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77400187 683 - 124281992  
i calJac3.chr9              C 0 I 197
s canFam3.chr10              67290708 694 -  69331447  
i canFam3.chr10             I 1229 C 0
e mm10.chr10                126837653 2855 + 130694993 I

a score=89272.000000
s hg38.chr12_GL383550v2_alt     72942 35 +    169178 TAATGTTCCTTAACATCAACTTCAGATGGTTA-TAT
s panTro4.chr12              31309085 35 + 134246214 TAATGTTTCTTAACATCAACTTCAGATGGTTA-TAT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78502156 35 - 136387465 TAATGTTTCTTAACATCAACTTCAGATGGTTA-TAT
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54721603 35 + 123690457 TAATGTTTCTTAACATCAATTTCAGATGGTTA-TAT
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79615194 35 - 134985053 TAATGTGTCTTAACATCAACTTCAGATGGTTA-TAT
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80717283 35 - 137757926 TAATGTGTCTTAACATCAACTTCAGATGGTTA-TAT
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78663187 35 - 132286798 TAATGTGTCTTAACATCAACTTCAGATGGTTA-TAT
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74590125 35 - 128539186 TAATGTGTCTTAACATCAACTTCAGATGGTTA-TAT
i chlSab2.chr11             C 0 C 0
s canFam3.chr10              67291402 23 -  69331447 taat-------------agcctcagaaggttattat
i canFam3.chr10             C 0 C 0
e mm10.chr10                126837653 2855 + 130694993 I
e calJac3.chr9               77400870 197 - 124281992 I

a score=598259.000000
s hg38.chr12_GL383550v2_alt     72977 173 +    169178 AAGGATTAATACAATAACTTATAAAGCACCAAAAATATAACAGATGCTCAATAAATGCTCAGTCCCTTCTCTTTCCCTTAGTAGAGCAAAGTCAGTTTCTTATGCAAGTTTTGATCTCCTCCAGCCTTCTCCTACATGTTCCATCCCCCATCC---------------------CACCCCCACATCCCTTAACT
s panTro4.chr12              31309120 173 + 134246214 AAGGATTAATACAATAACTTATAAAGCACCAAAAATATAACAGATGCTCAATAAATGCTCAGTCCCTTCTCTTTCCCTTAGTATAGCAAAGTCAGTTTCTTATGCAAGTTTTGATCTCCTCCAGCCTTCTCCTACATGTTCCATCCCCCATCC---------------------CACCCCCACATCCCTTAACT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78502191 173 - 136387465 AAGGATTAATACAATAACTTATAAAGCACCAAAAATATAACAGATGCTCAATAAATGCTCAGTCCCTTCTCTTTCCCTTAGTATAGCAAAGTCAGTTTCTTATGCAAGTTTTGATCTCCTCCAGCCTTCTCCTACATGTTCCATCCCCCATCC---------------------CACCCCTATATCCCTTACCT
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54721638 173 + 123690457 AAGGATTAATACAATAACTTATAAAGCACCAAAAATGTAACAGATGCTCAATAAAGGCTCAGTCCCTTCTCTTTCCCTTAGTATAGCAAAGTCAGTTTCTTATGCAAGTTTTGGTCTCCTCCAGCCTTCTCCTACATGTTCCATCCCCCATCC---------------------CACCCCCACATCCCTTACCT
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79615229 172 - 134985053 AAGGATTAATACAATAACTTATAAAGCACCAAAAATAAAACAGATGCTCAATAAATGCTCAGTCCCTTCCCTTTTCCTTAGTATAGCAAAGTCAGTTTCTTATGCAAGTTTTCATCTCTTCCAGCCTTCTCCTATATATTCCAT-CCCCATCC---------------------CACCCCCACATCCCTTACCT
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80717318 172 - 137757926 AAGGATTAATACAATAACTTATAAAGCACCAAAAATAAAACAGATGCTCAATAAATGCTCAGTCCCTTCCCTTTTCCTTAGTATAGCAAAGTCAGTTTCTTATGCAAGTTTTCATCTCTTCCAGCCTTCTCCTATATATTCCAT-CCCCATCC---------------------CACCCCCACATCCCTTACCT
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78663222 173 - 132286798 AAGGATTAATACAATAACTTATAAAgcaccaaaaataaaacagatgctcaataaatgctcagtcccttcccttttccttagTATAGCAAAGTCAGTTTCTTATGCAAGTTTTCATCTCTTCCAGCCTTCTCCTATATGTTCcatcccccatcc---------------------cacccccacatCCCTTACCT
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74590160 173 - 128539186 AAGGATTAATACAATAACTTATAAAGCACCAAAAATATAACAGATGTTCAATAAATGCTCAGTCCCTTCTCTTTCCCTTGGTATAGCAAAGTCAGTTTCTTATGCAAGTTTTGATCTCTTCCAGCCTTTTCCTATATATTCCATCCCCCATTC---------------------CACCCCCACATCCCTTACCT
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77401067 173 - 124281992 aaaGATTAATACAATAACTTATAAAGCACCAAAAATATAACAGATGCTCAATGAATGCTCAGTCCCTTCTCTTTCCCTTAATATAGCAAAGTCAGTTTCTTATGCAAGTTTGGGTCTCCTCCAGCCTCCTCCTCCATGTTCCATCCCCCATCC---------------------CACCCACGCATCCCTTAGCT
i calJac3.chr9              I 197 C 0
s canFam3.chr10              67291425 190 -  69331447 gaggatttctgtaataacttctaaggc-cccaaaatataggaggtgctcaataaatgctCAGTCCCCTC---TTCCCTCAGTGCACCAAAATCAATTCCTTGTGCAAGTTTTTATATCTTTCAAACTTCTCCTGTATGTGCCAacacacacacacacacacacacacacacacacacacacacacCTGTTAGCC
i canFam3.chr10             C 0 C 0
e mm10.chr10                126837653 2855 + 130694993 I

a score=331531.000000
s hg38.chr12_GL383550v2_alt     73150 98 +    169178 TGGCATTTCT-AAGACTGCAAATGGCAGGCAGCTGCACAAGGAAATTCTGTGGGGAGAGAGAATGTCAAGGGGCATGTCACTTCCCCACAAAGGAACTC
s panTro4.chr12              31309293 98 + 134246214 TGGCATTTCT-AAGACTGCAAATGGCAGGCAGCTGCACAAGGAAATTCTGTGGGGAGAGACAATGTCAAGGGGCATGTCACTTCCCCACAAAGGAACTC
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78502364 98 - 136387465 TGGCATTTCT-AAGACTGCAAATGGCAGACAGCTGCACAAGGAAATTCTGTGGGGAGAGAGAATGTCAAGGGGCATGTCACTTCCCCACAAAGGAACTC
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54721811 98 + 123690457 TGGCATTTCT-AAGACTGCAAATGGCAGACAGCTGCACAAGGAAATTCTGTGGGGAGAGAGAATGTCAAGGGGCATGTCACTTCCCCACAAAGGAACTC
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79615401 84 - 134985053 TGGCATTTCT-AAGA--------------CAGCTGCACAAGGAAATTCTGTGGGGAGAGAGAATGTCAAGGGGCATGTCACTTCCCCACAAAGCAACTC
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80717490 84 - 137757926 TGGCATTTCT-AAGA--------------CAGCTGCACAAGGAAATTCTGTGGGGAGACAGAATGTCAAGGGGCATGTCACTTCCCCACAAAGCAACTC
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78663395 84 - 132286798 TGGCATTTCT-AAGA--------------CAGCTGCACAAGGAAATTCTGTGGGGAGAGAGAATGTCAAGGGGCATGTCACTTCCCCACAAAGCAACTC
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74590333 84 - 128539186 TGGCATTTCT-AAGA--------------CAGCTGCACGAGGAAATTCTGTGGGGAGAGAGAATGTCAAGAGGCATGTCACTTCCCCACAAAGGAACTC
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77401240 98 - 124281992 TGGCATTTCT-AAGACTGCAAATGGCAGAGTGCTCCGCAAGGAAATTCTATGGGGAGAGAGAATGTCAAAGGGCATGTCACTTCCCCACAAAGGAACTC
i calJac3.chr9              C 0 C 0
s mm10.chr10                126840508 92 + 130694993 TGATTTTTTG-AAGGCTGTAAATGACAGAAGGAGCCTCAAGGAAATCTT-----TAGAGATAGT-TCAAGAGTCATACCACTGCCCCAGAAAGGAACTC
i mm10.chr10                I 2855 I 16
s canFam3.chr10              67291615 99 -  69331447 TGGTTTTTCTGAAGAATACAAATAAAAGAAGCCTCCACCAGCAAGTTCTATGAGGTGAGGGATTTTCAAGGGGTATGTCATTTCCCCACAAAGGAACTC
i canFam3.chr10             C 0 C 0

a score=8595.000000
s hg38.chr12_GL383550v2_alt     73248 2 +    169178 AC
s panTro4.chr12              31309391 2 + 134246214 AC
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78502462 2 - 136387465 AC
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54721909 2 + 123690457 AC
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79615485 2 - 134985053 AC
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80717574 2 - 137757926 AC
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78663479 2 - 132286798 AC
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74590417 2 - 128539186 AC
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77401338 2 - 124281992 AC
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67291714 2 -  69331447 AC
i canFam3.chr10             C 0 C 0
e mm10.chr10                126840600 16 + 130694993 I

a score=44532.000000
s hg38.chr12_GL383550v2_alt     73250 13 +    169178 TCTCCTTCCCATT
s panTro4.chr12              31309393 13 + 134246214 TCTCCTTCCCATT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78502464 13 - 136387465 TCTCCTTCCCATT
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54721911 13 + 123690457 TCTCCTTCCCATT
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79615487 13 - 134985053 TCTCCTTCCCATT
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80717576 13 - 137757926 TCTCCTTCCCATT
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78663481 13 - 132286798 TCTCCTTCCCATT
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74590419 13 - 128539186 TCTCCTTCCCATT
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77401340 13 - 124281992 TCTCCTTCCCATT
i calJac3.chr9              C 0 C 0
e mm10.chr10                126840600 16 + 130694993 I
e canFam3.chr10              67291716  0 -  69331447 C

a score=542338.000000
s hg38.chr12_GL383550v2_alt     73263 160 +    169178 TTGTTATATGAGTTGTTTGGCCAGG---TATATTCTCACAGAAAACTAGGAAAATACTGTAACGTTCTGGATAATGAAACCTCTGAGTCAGGTGTGACTGGAACATGGCCTA------------------ACTCCCAAGGCTGGGCCCCATTTATTTAATAGAAGCTAAGATTCTTCTTGA
s panTro4.chr12              31309406 160 + 134246214 TTGTTATATGAGTTGTTTGGCCAGG---TATATTCTCCCAGAAAACTAGGAAAATACTGTAACGTTCTGGATAATGAAACCTCTGAGTCAGGTGTGACTGGAACATGGCCTA------------------ACTCCCAAGGCTGGACCCCATTTATTTAATAGAAGCTAAGATTCTTCTTGA
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78502477 160 - 136387465 TTGTTATATGAGTTGTTTGGCCAGG---TATTTTTTCACAGAAAACTAGGAAAATACTGTAACATTCTGGATAATGAAACCTCTGAGTCGGGTGTGACTGGAACATGGCCTA------------------ACTCCCAAGGTTGGACCCCATTTATTTAATAGAAGCTATGATACTTCTTGA
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54721924 160 + 123690457 TTGTTATATGAGTTGTTTGGCCAGG---TATTTTCTCACAGAAAACTAGGAAAATACTGTAACATTCTGAATAATGAAACCTCTGAGTCAGGTGTGACTGGAACATGGCCTA------------------ACTCCCAAGGTTGGACCCCATTTGTTTAATAGAAGCTAAGATTCTTCTTGA
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79615500 160 - 134985053 TTGTTATATGAGTTGTTTGGCCAGG---TATTTTCTCACAGAAAACTAGGAAAATACTGTAATGTTCTAGATAATGAAATCTCTGAGTCAGATGTGACTGGAACATGGCCTA------------------ACTCCCAAGGTTGGACCCCATTTATTTAATAGAAGCTAAGATTCTTCTTGA
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80717589 160 - 137757926 TTGTTATGTGAGTTGTTTGGCCAGG---TATTTTCTCACAGAAAACTAGGAAAATACTGTAATGTTCTAGATAATGAAATCTCTGAGTCAGATGTGACTGGAACATGGCCTA------------------ACTCCCAAGGTTGGACCCCATTTATTTAATAGAAGCTAAGATTCTTCTTGA
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78663494 160 - 132286798 TTGTTATATGAGTTGTTTGGCCAGG---TATTTTCTCACAGAAAACTAGGAAAATACTGTAATGTTCTAGATAATGAAATCTCTGAGTCAGATGTGACTGGAACATGGCCTA------------------ACTCCCAAGGTTGGACCCCATTTATTTAATAGAAGCTAAGATTCTTCTTGA
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74590432 160 - 128539186 TTGTTATATGAGTTGTTTGGCCAGG---TATTTTCTCACAGAAAACTAAGAAAATACTGTAATGTTCTGGATAATGAAATCTCTGAGTCAGATGTAACTGGAACATGGCCTA------------------ACTCCCAAGGTTGGACCCCATTTATTTAATAGAAGCTAAGATTCTTCCTGA
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77401353 178 - 124281992 TTGTTATGTGGATTGTTTGGCCAGA---TATTTTCTCACTGAAGACTAGGAAAATATGGTAAAGTTCCAGGTGGTGAGATCTGTGAGTCAGGTGTGACTGGAACGTGGCCTaaggctggacccaaggctgagtcccaaggctggacccCATGTATTTAATAGAAGCTAAGGTTCTTCTTGA
i calJac3.chr9              C 0 C 0
s canFam3.chr10               2040472 150 +  69331447 TTGTTATGTGGGTTGTTTG--CAGGGGCTGTTTTCTCAGAGACGACTGGGAAAATATGGTAACATTCTGGTTTATAAAGCCTCTGAGTCTGGTGTGA-----------ACTG------------------ACTCCCAATGCTGGAACCTCATCCTTCAAGAAAATCTAAGATTCTTCCTGA
i canFam3.chr10             n 0 T 10507
e mm10.chr10                126840600  16 + 130694993 I

a score=6552.000000
s hg38.chr12_GL383550v2_alt     73423 2 +    169178 TT
s panTro4.chr12              31309566 2 + 134246214 TT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78502637 2 - 136387465 TT
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54722084 2 + 123690457 TT
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79615660 2 - 134985053 TT
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80717749 2 - 137757926 TT
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78663654 2 - 132286798 TT
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74590592 2 - 128539186 TT
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77401531 2 - 124281992 TT
i calJac3.chr9              C 0 C 0
e mm10.chr10                126840600 16 + 130694993 I
e canFam3.chr10               2040622 10507 +  69331447 T

a score=32670.000000
s hg38.chr12_GL383550v2_alt     73425 9 +    169178 CTGAAGCAG
s panTro4.chr12              31309568 9 + 134246214 CTGAAGCAG
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78502639 9 - 136387465 CTAAAGCAG
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54722086 9 + 123690457 CTGAAGCAG
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79615662 9 - 134985053 CTGAAGCAG
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80717751 9 - 137757926 CTGAAGCAG
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78663656 9 - 132286798 CTGAAGCAG
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74590594 9 - 128539186 CTGAAGCAG
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77401533 9 - 124281992 CTGAAGCAG
i calJac3.chr9              C 0 I 8
s canFam3.chr10              67291716 9 -  69331447 CAGAAGTTG
i canFam3.chr10             C 0 C 0
e mm10.chr10                126840600 16 + 130694993 I

a score=222294.000000
s hg38.chr12_GL383550v2_alt     73434 68 +    169178 TTTTCTCACAGGTCTAAACAGCCCTGCCTCCAGCGTTTAATCATTGGATTCACTTCAATTCTGCTTAA
s panTro4.chr12              31309577 68 + 134246214 TTTTCTCACAGGTCTAAACAGCCCTGCCTCCAGCGTTTAATCATTGGATTCACTTCAATTCTGCTTAA
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78502648 68 - 136387465 TTTTCTCACAGGTCTAAACAGCCCTGCCTCCAGCATTTAATCATTGGATTCACTTCAATTCTGCTTAA
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54722095 68 + 123690457 TTTTCTCACAGGTCTAAACAGCCCTGCCTCCAGTGTTTAATCATTGGATTCACTTCAATTCTGCTTAA
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79615671 68 - 134985053 TTTTCTCACAGGTCTAAACAGCCCTGCCTCCAGCGTTTAATCATGGGATTCACTTCAATTCTGCTTAA
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80717760 68 - 137757926 TTTTCTCACAGGTCTAAACAGCCCTGCCTCCAGCGTTTAATCATGGGATTCACTTCAATTCTGCTTAA
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78663665 68 - 132286798 TTTTCTCACAGGTCTAAACAGCCCTGCCTCCAGCGTTTAATCATTGGATTCACTTCAATTCTGCTTAA
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74590603 68 - 128539186 TTTTCTCACAGGTCTAAACAGCCCTACCTCCAGCGTTTAATCATTGGATTCACTTCAATTCTACTTAA
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77401550 68 - 124281992 TTTTCTCACAGCTCTTAACAGCCCCGACTCCAGCATTTAACCATGGGGTTCACTTCAATTCTGCTTAA
i calJac3.chr9              I 8 C 0
s mm10.chr10                126840616 66 + 130694993 TTTCCTCATGGGTCAAAATGGTCCCAACTCTAAGATTTAATCCCTAGATTAACTC--ATTTAACTTAA
i mm10.chr10                I 16 I 3604
s canFam3.chr10              67291725 15 -  69331447 TCTTCTC---------------------------------TCCTTGGA--------------------
i canFam3.chr10             C 0 C 0

a score=228631.000000
s hg38.chr12_GL383550v2_alt     73502 82 +    169178 CTGTACTCTTCCACACACTCTGCTCCTCTCAGCCCTGACTGTACAGCAATGCTTTCCCTCAGTGAATGGGCATGTCCAGGTT
s panTro4.chr12              31309645 82 + 134246214 CTGTACTCTTCCACACACTCTGCTCCTCTCAGCCCTGACTGTACAGCAATGCTTTCCCTCAGTGAATGGGCATGTCCAGGTT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78502716 82 - 136387465 CCGTACACTTCCACACACTCCGCTCCTCTCAGCCCTGACCGTACAGCAATGCTTTCCCTCAGTGAATGGGCATGTCCAGGTT
i ponAbe2.chr12             C 0 I 1982
s nomLeu3.chr11              54722163 82 + 123690457 TCGTACTCTTCCACACACTCTGCTCCTCTCAGCCCTGACTGTACAGCAATGCGTTCCCTCAGTGAATGGGCACGTCCAGATT
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79615739 82 - 134985053 ATGTACTCTTCCACACACTCCGCTCCTCTCAGCCCTGACTGTTCAGCAATGCATTCCCCCAGTGAATGGGCACGTCCAGGTT
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80717828 82 - 137757926 ATGTACTCTTCCACACACTCCGCTCCTCTCAGCCCTGACTGTTCAGCAATGCATTCCCCCAGTGAATGGGCACGTCCAGGTT
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78663733 82 - 132286798 ATGTACTCTTCCACACACTCCGCTCCTCTCAGCCCTGACTGTTCAGCAATGCGTTCCCCCAGTGAATGGGCACATCCAGGTT
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74590671 82 - 128539186 ATATACTCTTCCACACACCCCGACCCTCTCAGCCCTGACTGTTCAGCAATATGTTCCCTCAGTGAATGGGCACGTCCAGGTT
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77401618 81 - 124281992 CCATACTCTTCCACACACTCTGCTCCTCTCAGCCCTGACTGTTCAACAGCGTGTTCCCTCGGTGGATGGGCACGT-CAGGTT
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67291740 23 -  69331447 ------------------------------------GACC----------------------TAAATGGGT-CGTCCAGGTC
i canFam3.chr10             C 0 C 0
e mm10.chr10                126840682 3604 + 130694993 I

a score=78488.000000
s hg38.chr12_GL383550v2_alt     73584 24 +    169178 -----GACGGTGATTTATACCTCACCTTT
s panTro4.chr12              31309727 24 + 134246214 -----GACGGTGATTTATACCTCACCTTT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78504780 24 - 136387465 -----GACGGTGATTTATACCTCACCTTT
i ponAbe2.chr12             I 1982 C 0
s nomLeu3.chr11              54722245 24 + 123690457 -----GACGGTGATTTATACCTTACCTTT
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79615821 24 - 134985053 -----GACGGGGATTTACACTTCACCTTT
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80717910 24 - 137757926 -----GACGGGGATTTACACTTCACCTTT
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78663815 24 - 132286798 -----GACGGGGATTTACACTTCACCTTT
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74590753 24 - 128539186 -----GACGGGGATTTACACCTCACCTTT
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77401699 24 - 124281992 -----GACAGTGATTTATACCTCACCTTT
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67291763 29 -  69331447 CACAAGGATGTGATTTATCCCTCACCGTC
i canFam3.chr10             C 0 C 0
e mm10.chr10                126840682 3604 + 130694993 I

a score=70735.000000
s hg38.chr12_GL383550v2_alt     73608 24 +    169178 TACTTCACAATGCCACTTCAGGAA
s panTro4.chr12              31309751 24 + 134246214 TACTTCACAATGCCACTTCAGGAA
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78504804 24 - 136387465 TACTTCACAATGCCACTTCAGGAA
i ponAbe2.chr12             C 0 C 0
s rheMac3.chr11              79615845 24 - 134985053 TACCTCACAATGCCACTTTAGGAA
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80717934 24 - 137757926 TACCTCACAATGCCACTTTAGGAA
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78663839 24 - 132286798 TACCTCACAATGCCACTTTAGGAA
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74590777 24 - 128539186 TACCTCACAATGCCACTTTAGGAA
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77401723 24 - 124281992 TAGCTCACAATGCAGCTTTAGGAA
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67291792 24 -  69331447 TACTTCACAATGCCTCTTCAGGAA
i canFam3.chr10             C 0 C 0
e mm10.chr10                126840682 3604 + 130694993 I
e nomLeu3.chr11              54722269  0 + 123690457 C

a score=188177.000000
s hg38.chr12_GL383550v2_alt     73632 55 +    169178 TGGAGAAGCCATTAACCACTGGTTCAAATCATATGGTTCAAACCCGAAATGACTT
s panTro4.chr12              31309775 55 + 134246214 TGGAGAAGCCATTAACCACTGGTTCAAATCATATGGTTCAAACCCGAAATGACTT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78504828 55 - 136387465 CGGAGAAGCCATTAACCACTGGTTCAAATCATATGGTTCAAACCCGAAATGACTT
i ponAbe2.chr12             C 0 C 0
s rheMac3.chr11              79615869 55 - 134985053 TGGAGAAGCCATTAACCACTGGTTCAAATCATATGGTTCAAACCCAAAATGACTT
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80717958 55 - 137757926 TGGAGAAGCCATTAACCACTGGTTCAAATCATATGGTTCAAACCCAAAATGACTT
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78663863 55 - 132286798 TGGAGAAGCCATTAACCACTGGTTCAAATCATACGGTTCAAACCCAAAATGACTT
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74590801 55 - 128539186 TGGAGAAGCCACTAACCACTGGTTCAAATCATATGGTTCAAACCCAAAATGACTT
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77401747 55 - 124281992 TGGAGAAGCCATTCACCACTGGTTCAAACCACATGGTTCAAACCCAAAATGACTT
i calJac3.chr9              C 0 C 0
s mm10.chr10                126844286 55 + 130694993 TGGAGAACTAGCTGGGCACTGGTTGGAATCAGATGACCTGAATTCAAGATGACTT
i mm10.chr10                I 3604 I 605
s canFam3.chr10              67291816 55 -  69331447 CAGAGAAGCCATTAAACCTGGATTCAAATCATACGGTTCAAACCCAAAATGACTT
i canFam3.chr10             C 0 C 0
e nomLeu3.chr11              54722269  0 + 123690457 C

a score=8852.000000
s hg38.chr12_GL383550v2_alt     73687 3 +    169178 TAA
s panTro4.chr12              31309830 3 + 134246214 TAA
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78504883 3 - 136387465 TAA
i ponAbe2.chr12             C 0 C 0
s rheMac3.chr11              79615924 3 - 134985053 TAA
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80718013 3 - 137757926 TAA
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78663918 3 - 132286798 TGA
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74590856 3 - 128539186 TAA
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77401802 3 - 124281992 TAA
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67291871 3 -  69331447 TAA
i canFam3.chr10             C 0 C 0
e mm10.chr10                126844341 605 + 130694993 I
e nomLeu3.chr11              54722269 0 + 123690457 C

a score=335958.000000
s hg38.chr12_GL383550v2_alt     73690 132 +    169178 ------------------------------------------------------------CACTTGTTCTTTTCAGAGACCTACC---------TTTACAA--GCACAGTTTAAATTAAGCAGGATGTCAGAGTCAGTCTCTTA---------------------TCCTTTTTTTTTTTTAATAGGGTTTTTCTTTTTTTCCTGGTGAGGGAAAGG------TTTGGAAA
s panTro4.chr12              31309833 132 + 134246214 ------------------------------------------------------------CACTTGTTCTTTTCAGAGACCTACC---------TTTACAA--GCACAGTTTAAATTAAGCAGGATATCAGAGTCAGTCTCTTA---------------------TCCTTTTTTTTTTTTAATAGGGTTTTTCTTTTTTTCCTGGTGAGGGAAAGG------TTTGGAAA
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78504886 131 - 136387465 ------------------------------------------------------------CACTTGTTCTTTTCAGAGACCTACC---------TTTACAA--GCACAGTTTAAATTAAGCAGGATATCAGAGTCAATCTCTTA---------------------TCC-TTTTTTTTTTTAATAGGGTTTTTCTTTTTTTCCTGGTGAGGGAAAGG------TTTGGAAA
i ponAbe2.chr12             C 0 C 0
s rheMac3.chr11              79615927 130 - 134985053 ------------------------------------------------------------CACTTGCTCTTTTCAGAGACCTACC---------TTTACAA--GCACAATTTAAATTAAGCAGGATCTCAGAGACAATCTCTTA---------------------TCCTT--TTTTTTTTAATAGGGTTTTTCTTTTTTTCCTGGTGAGGGAAAGG------TTTGGAAA
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80718016 131 - 137757926 ------------------------------------------------------------CACTTGCTCTTTTCAGAGACCTACC---------TTTACAA--GCACAATTTAAATTAAGCAGGATCTCAGAGACAATCTCTTA---------------------TCCTTTATTTTTTTTAATAGGGTTTTTC-TTTTTTCCTGGTGAGGGAAAGG------TTTGGAAA
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78663921 132 - 132286798 ------------------------------------------------------------CACTTGCTCTTTTCAGAGACCTACC---------TTTACAA--GCACAATTTAAATTAAGCAGGATCTCAGAGACAATCtctta---------------------tcctgttttttttttaatagggtttttctttttttcctggtaaGGGAAAGG------TTtggaaa
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74590859 131 - 128539186 ------------------------------------------------------------CATTTGTTCTTTTCAGAGACCTACC---------TTTACAA--GCACAATTTAAATTAAGCAGGATCTCAGAGACAATCTCTTA---------------------TCCTTT-TTTTTTTAAATAAGGTTTTTCTTTTTTTCCTGGTGAGGGAAAGG------TTTGGAAA
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77401805 162 - 124281992 ------------------------------------------------------------CACTTGTTCTTTTCAGAGACCTACCTGACAGACTTTTACAA--GCACAGTTTAAATTAAGCAGGATCTTAGAATAAATCTCTTAGACGTTTTCTTGTTTGGTTTTTTGTTTTTGTTTTTGGATAGGGTTTTTCTTTTTGTCCTGGTGAGAGAAATG------TTTGAGAA
i calJac3.chr9              C 0 I 6
s mm10.chr10                126844946 147 + 130694993 ------------------------------------------------------------CATTTGTTCTTTTTAAAGACTCACT---------TGGCCCACTTCACAGTTCGGATTAGGCAGGATTTCAGAGTCAACGTCTCC------TCCTCCTACTGCTCCTCCTCCTCATTTTTAAATATGGTTTTTCATTTTCTCCCGGGGAGG--AATG------TTCAGGAA
i mm10.chr10                I 605 C 0
s canFam3.chr10              67291874 184 -  69331447 CATGTGTTCCTaaaaaaaaaaaaaaaacaaaaacaaaaaacaaaaaaaaaaaaaaaaaaaCATGTGTTCCTTTCTGAGACCTGCTTGACAGAGTTTTATAA--GCACCATTTATATTGGGCAGGATCTCAGAGTTTATATCTTC---------------------TCTCTT-----------------------TTTCCTCCTGGCAGGAGAAAGGAAAAATTTTGAGAA
i canFam3.chr10             C 0 C 0
e nomLeu3.chr11              54722269   0 + 123690457 C

a score=20739.000000
s hg38.chr12_GL383550v2_alt     73822 10 +    169178 AAACatatat
s panTro4.chr12              31309965 10 + 134246214 AAACatatat
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78505017 10 - 136387465 AAACatacat
i ponAbe2.chr12             C 0 C 0
s rheMac3.chr11              79616057 10 - 134985053 AAACatatat
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80718147 10 - 137757926 AAACatatat
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78664053 10 - 132286798 aaacatatat
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74590990 10 - 128539186 AAACatatat
i chlSab2.chr11             C 0 C 0
s mm10.chr10                126845093  4 + 130694993 ---CA---AT
i mm10.chr10                C 0 C 0
s canFam3.chr10              67292058 10 -  69331447 CAATATATAT
i canFam3.chr10             C 0 C 0
e calJac3.chr9               77401967  6 - 124281992 I
e nomLeu3.chr11              54722269  0 + 123690457 C

a score=12597.000000
s hg38.chr12_GL383550v2_alt     73832 61 +    169178 atacacatatatatatgtgtgtgtatatatatgtatatatgtatatatgtatgtatgtata
s panTro4.chr12              31309975 43 + 134246214 atacacatatatatatgtgtgtgtatatatatgtatatatgta------------------
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78505027 37 - 136387465 acacacatatata------tgtgtgtatatatgtatatatgta------------------
i ponAbe2.chr12             C 0 C 0
s rheMac3.chr11              79616067 26 - 134985053 atgtatgtataca------catatatacatat-----------------------------
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80718157 26 - 137757926 atgtatgtataca------catatatacatat-----------------------------
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78664063 51 - 132286798 atgtatgtataca------catatatacatatatgtgtatgtatatacttatacata----
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74591000 26 - 128539186 atgtatgtatata------catgtatacatat-----------------------------
i chlSab2.chr11             C 0 C 0
s mm10.chr10                126845097 11 + 130694993 ATGTACGCATC--------------------------------------------------
i mm10.chr10                C 0 C 0
e canFam3.chr10              67292068  0 -  69331447 C
e calJac3.chr9               77401967  6 - 124281992 I
e nomLeu3.chr11              54722269  0 + 123690457 C

a score=63753.000000
s hg38.chr12_GL383550v2_alt     73893 96 +    169178 tatgtatatgtatatatgtatatgtatatgtgtatatg--tatatatagatatgtaaaaatatatatagagacacacatatacatatatTTTGTTGGT
s panTro4.chr12              31310018 90 + 134246214 ----tgtatgtatatatgtatatgtatatgtgtatatg--tatatatagatatgtaaaaatatatatagagacacacatat--atatatTTTGTTTGT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78505064 87 - 136387465 ----tgtatatatgtatacatgtatatgtgtgtatgtg--tgtatatatatatgtaaaaaaatatatatagacacat---t--atatatatTGTTTGT
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54722269 90 + 123690457 ------TATGTGTGTGtatatacatgtatgtatatgtg--tatatgtatatatatataaatatatatagacacacatatatatatatatTTTGTTTGT
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79616093 69 - 134985053 ---------------------ccgtatatgtatatatgtatatatatttatgtgtgtaaaaatatatatacacacac---t--atatatT---TTTGT
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80718183 69 - 137757926 ---------------------acgtatatgtatatatgtatatatatttatgtgtgtaaaaatatatatacacacac---t--atatatT---TTTGT
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78664114 84 - 132286798 ------tatacatatacatacacgtatatgtatatatgtatatatatttatgtgtgtaaaaatatatatacacacac---t--atatatt---tttgt
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74591026 65 - 128539186 ---------------------acgtatatgtttatatg--tatatatttatgtatgtaaaaatatatat--acacac---t--atatatT---TTTGT
i chlSab2.chr11             C 0 C 0
s mm10.chr10                126845108 11 + 130694993 ----------------------------------------------------TGACCCAAAGG-----------------------------------
i mm10.chr10                C 0 C 0
e canFam3.chr10              67292068  0 -  69331447 C
e calJac3.chr9               77401967  6 - 124281992 I

a score=3276.000000
s hg38.chr12_GL383550v2_alt     73989 1 +    169178 T
s panTro4.chr12              31310108 1 + 134246214 T
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78505151 1 - 136387465 T
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54722359 1 + 123690457 T
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79616162 1 - 134985053 T
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80718252 1 - 137757926 T
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78664198 1 - 132286798 t
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74591091 1 - 128539186 T
i chlSab2.chr11             C 0 C 0
s canFam3.chr10              67292068 1 -  69331447 T
i canFam3.chr10             C 0 C 0
e mm10.chr10                126845119 0 + 130694993 C
e calJac3.chr9               77401967 6 - 124281992 I

a score=3104957.000000
s hg38.chr12_GL383550v2_alt     73990 807 +    169178  
s panTro4.chr12              31310109 807 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78505152 808 - 136387465  
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54722360 807 + 123690457  
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79616163 806 - 134985053  
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80718253 806 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78664199 805 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74591092 806 - 128539186  
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77401973 800 - 124281992  
i calJac3.chr9              I 6 C 0
s mm10.chr10                126845119 791 + 130694993  
i mm10.chr10                C 0 I 97
s canFam3.chr10              67292069 779 -  69331447  
i canFam3.chr10             C 0 I 1391

a score=1103296.000000
s hg38.chr12_GL383550v2_alt     74797 380 +    169178 ggccgggtgctatgactcatgcctgtaatctcagcactttggcaggccaaggcgggtggatcccctgaggtcaggagttcaagaccagcccagccaacatggtgaaaccccatctctactaaaaatgcaaaaaattagccgggcatggtggtgggctcctgtaatcccagccactcgggaggctgaggcaggagaattgcttgaacctgggaggcagaggttgcagtgagctgagatggcaccattgtaccccagcctgggcaacaagagcaaaactccatctcaaaaacaaacaacaacaac-a-aa--------aaaaaaTtgattctcaactctggctgcacattagaatcatctgaatag---------aaatagaaatgcctggatcccacccc
s panTro4.chr12              31310916 381 + 134246214 ggctgggtgcgatgactcatgcctgtaatctcagcactttggcagaccaaggcgggtggatcccctgaggtcaggagttcaagaccagcccagccaacatggtgaaaccctatctctactaaaaatgcaaaaaattagccgggcatggtggtgggctcctgtaatcccagccactcgggaggctgaggcaggagaattgcttgaacctgggaggcagaggttgcagtgagctgagatggcaccattgtaccccagcctgggcaacaagagcaaaactccatctcaaaaacaaacaacaacaacaa-aa--------aaaaaaTtgattctcaactctggctgcacattagaatcatctgaatag---------aaatagaaatgcctgggtcccacccc
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78505960 381 - 136387465 ggccgggcgcagtgactcatgcctgtaatctcggcactttgggaggccgaggcgggtggatcacctgaggtcaggagttcaagaccagcccagccaacatggtgaaaccccatctctactaaaaatgcaaaaaattagccggacatggtggtgggctcctgtaatcccagccactcgggaggctgaggcaggagaattgcttgaacccgggaggcagaggttgcagtgagctgagattgcaccattgtaccccagcctgggcaacaagagcaaaactccatctcaaaaaCAaacaacaacaacaa-ca--------acaaAATtgattctcaactctggctgcacattagaatcatccgaatag---------aaacagaaatgcctgggtcccacccc
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54723167 382 + 123690457 ggccgggcgcggtgactcatgcctgtaatctcagcactttgggaggccgaggcgggtggatcacctgaggtcaggagttcaagaccagcccagccaacatggtgaaaccccctctctactaaaaatacaaaaaattagccaggcatggtggtgggctcctgtaatcccagccactagggaggctgaagcaggagaattgcttgaacccgggaggcagaggttgcagtgagctgagatcacaccattgtaccccagcctggacaaaaagagcaaaactccatctcaaaaacaaacaataacagcaacaa--------aaaaaaTtgattctcaactctggctgcacagtataatcatctgaatag---------aaataaaaatgcctgggtcccacccc
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79616969 381 - 134985053 ggccaggtgcagtgactcctgcctgtaatctcagcactttgtgagcccaaggtgggtgaatcacctgtggtcaggagttcaagaccagcccagctaacatggtgaaaccccatctctactaaaaatacaaaaaattagccaggcatggtggtgggctcctctaatcccagccactcgggaggctgaggcaggagaattgcttgaacccaggaggcagaggttgcagtgagctgagatcgcaccattgtactccagccttggcaacaaaagcgaaactccatctcaaaaacaaaaaacaacaacaa-aa--------aaaaaaTtgattctcaactctggctacacattagaatcatctgaatag---------aactagaaatacctgggtcccacccc
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80719059 381 - 137757926 ggccaggtgcagtgactcctgcctgtaatctcagcactttgtgagcccaaggtgggtgaatcacctgtggtcaggagttcaagaccagcccagctaacatggtgaaaccccatctctactaaaaatacaaaaaattagccaggcatggtggtgggctcctctaatcccagccactcgggaggctgaggcaggagaattgcttgaacccaggaggcagaggttgcagtgagctgagatcgcaccattgtactccagccttggcaacaaaagcgaaactccatctcaaaaacaaaaaacaacaacaa-aa--------aaaaaaTtgattctcaactctggctacacattagaatcatctgaatag---------aactagaaatacctgggtcccacccc
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78665004 381 - 132286798 ggccaggtacagtgactcctgcctgtaatctcagcactttgtgagcccaaggtgggtgaatcacctgtggtcaggagttcaagaccagcccagctaacatggtgaaaccccatctctactaaaaatacaaaaaatttgcctggcatggtggtgggctcctctaatcccagccactcgggaggctgaggcaggagaattgcttgaacccaggaggcagaggttgcagtgagctgagatcgcaccattgtactccagccttggcaacaaaagcgaaactccatctcaaaaacaaaaaacaacaacaa-ca--------aaaaacttgatTCTCAACTCtggctacacattagaatcatctgaatag---------aactagaaatacctgGGTCCCACCCC
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74591898 389 - 128539186 ggccaggtgaggtgactcatgcctgtaatctcagcactttgtgtggccgaggtgggtgaatcacctgtggtcaggagttcaagactagcccagccaatatggtgaaaccccatctctactaaaaatacaaaaaatttgcctagcatggtggtgagctcctctaatcccagccactcgggaggctgaggcaggagaattgcttgaacccaggaggcagaggttgcagtgagctgagatcgcaccattgtactcaagccttggcaacaaaagcgaaactccatctcaaaaacaaaaaacaacaacaa-caacaacaacaaaaaATtgattctcaactctggctacacattagaatcatctgaatag---------aactagaaatacctgggtcccaaccc
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77402773 395 - 124281992 ggccaggcacggtggctcacacctgtaatcccagcactttgggaggccaaggcaggtggatcatctgtggtcaggaattcaaggccaacccagccaacatggtaaaactccatctcaattaaaaatattaaaaataagccaggtgtggtggtgggcacctataattccagctacttgggaggctgaggcaggagaatcgcttaaatccaggaggcagaggttgcagtgagctgaggtcacgccattgcactccagcctgggcaacaaaagcgaaactccgtctcaaaaaaaaaaaaaagaaagaa-ag---aaaagaaAAcattgattctgaactctggctgcacattagaattatctgaggagggttttttaaaatagaaatgcctgggtcgtacccc
i calJac3.chr9              C 0 C 0
e mm10.chr10                126845910  97 + 130694993 I
e canFam3.chr10              67292848 1391 -  69331447 I

a score=4716.000000
s hg38.chr12_GL383550v2_alt     75177 2 +    169178 ta
s panTro4.chr12              31311297 2 + 134246214 ta
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78506341 2 - 136387465 ta
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54723549 2 + 123690457 tc
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79617350 2 - 134985053 ta
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80719440 2 - 137757926 ta
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78665385 2 - 132286798 Ta
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74592287 2 - 128539186 ta
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77403168 2 - 124281992 ta
i calJac3.chr9              C 0 C 0
s mm10.chr10                126846007 2 + 130694993 TT
i mm10.chr10                I 97 C 0
e canFam3.chr10              67292848 1391 -  69331447 I

a score=1141391.000000
s hg38.chr12_GL383550v2_alt     75179 324 +    169178 gagatgctgcatttttt--taagaactccagcagggactttgatac-acagccaggactgagaacagctgACTGGGAACATGGAGAAAGTTCATAAACAGAGACTGTAGATTAGGATCTTGTTTGCAGAAAGAAACCTCCCAGAGCAAA-T-----CAACAGATGAAGATCAGCAGCCCCTGGACAGCACAG---------------------TCACATCTTG---TGATGGCTTCTTACTGGGGAATTTGGGTTTTGTATCAAAACC-------CAAATGTG---ACCCAAA----ATATACA-------ATTTGCTATAA------------------ATTTCCATGTA--TGT-------------------TGGTTGTTTAGTAGAGTGTCTCAGCTGAGCCACAACTGGAAT
s panTro4.chr12              31311299 324 + 134246214 gagatgctgcatttttt--taagaactccagcagggactttgatac-acagccaggactgagaacagctgACTGGGAACATGGAGAAAGTTCATAAACAGAGACTGTAGATTAGGATCTTGTTTGCAGAAAGAAACCTCCCAGAGCAAA-T-----CAACAGATGAAGATCAGCAGCCCCTGGACAGCACAG---------------------TCACATCTTG---TGATGGCTTCTTACTGGGGAATTTGGGTTTTGTATCAAAACC-------CAAATGTG---ACCCAAA----ATATACA-------ATTTGCTATAA------------------ATTTCCATGTA--TGT-------------------TGATTGTTTAGCAGAGTGTCTCAGCTGAGCCACAACTGGAAT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78506343 324 - 136387465 gagattttgTATTCttt--taagaactccagcagggactttgatac-acagccaggactgagaacagctgACTGGGAACATGGAGAAAGTTCATAAACAGAGACTGTAGATTAGGATCTTGTTTGCAGAAAGAAACCTCCCAGAGCAAA-T-----CAATAGATGAAGATCAGCAGACTCTGGACAGCACAG---------------------TCACATCTTG---TGTTGGCTTCTTACTGGGGAATTTGGGTTTTGTATCAACACC-------CAAATGTG---ACCCAAA----ATATACA-------ATTTGCTATGA------------------ATTTCCATGTA--TGT-------------------TGATTGTTTAGTAGAGTGTCTCAGCTGAGCCACAACTGGAAT
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54723551 324 + 123690457 gagattttgcatttttt--taagaattccagcagggactttgatac-acagccaggactgagaacagctgACTGGGAACATGCAGAAAGTTCATAAACAGAGACTGTAGATTAGGATCTTGTTTGCAGAAAGAAACCTCCCAGAGCAAA-T-----CAACAGATGACGATCAGCAGACCCTGGACAGCACAG---------------------TCACGTCTTG---TGATGGCTTCTTACTGGGGAATTTGTGTTTTGTATCAAAACC-------CAAATGTG---ACCCAAA----ATATACA-------ATTTGCTATAA------------------ATTTCCATGTA--TGT-------------------TGATTGTTTAGTAGAGTGTCTCAGCCGAGCCACAACTGGAAT
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79617352 323 - 134985053 gagattttgcatttttt--taagaactccagcaggaattttgatac-acagccaggactgagaacAGTTGACTAGGAACATGGAGAAAGTTCATAAACAAAGACTGTAGATTAGGATCTTGTTTGCAGAAAAAAACCTCCCAGAGCAAA-T-----CAACAGATGAAGATTAGCAGCCCCTGGACAGCACAG---------------------TCACATCTTG---TGATGGCTCCTTACT-CAGAATTTGGGTTTTGTACCAAAACC-------CAAATGTG---ACCCAAA----ATATACA-------ATTTGCTATAT------------------ATTTCCATGTA--TAC-------------------TGATTGTTTAGTAGAGTATCTCAGCTGAGCCACAACTGGAAT
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80719442 323 - 137757926 gagattttgcatttttt--taagaactccagcaggaattttgatac-acagccaggactgagaacAGTTGACTAGGAACATGGAGAAAGTTCATAAACAAAGACTGTAGATTAGGATCTTGTTTGCAGAAAAAAACCTCCCAGAGCAAA-T-----CAACAGATGAAGATTAGCAGCCCCTGGACAGCACAG---------------------TCACATCTTG---TGATGGCTCCTTACT-CAGAATTTGGGTTTTGTACCAAAACC-------CAAATGTG---ACCCAAA----ATATACA-------ATTTGCTATAT------------------ATTTCCATGTA--TAC-------------------TGATTGTTTAGTAGAGTATCTCAGCTGAGCCACAACTGGAAT
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78665387 323 - 132286798 gagattttgcatttttt--taagaaCTCCAGCAGGAATTTTGATAC-ACAGCCAGGACTGAGAACAGTTGACTAGGAACATGGAGAAAGTTCATAAACAAAGACTGTAGATTAGGATCTTGTTTGCAGaaaaaaaCCTCCCAGAGCAAA-T-----CAACAGATGAAGATTAGCAGCCCCTGGACAGCACAG---------------------TCACATCTTG---TGATGGCTCCTTACT-CGGAATTTGGGTTTCGTACCAAAACC-------CAAATGTG---ACCCAAA----ATATCCA-------ATTTGCTATAT------------------ATTTCCATGTA--TAT-------------------TGATTGTTTAGTAGAGTATCTCAGCTGAGCCACAACTGGAAT
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74592289 322 - 128539186 gagattttgcatttttt--taagaactccagcaggaattttgatac-acagccaggactgaaaacAG-TGATTGGGAACATGGAGAAAGTTCATAAACAGAGACTGTAGATTAGGATCTTGTTTGCAGAAAAAAACCTCCCAGAGCAAA-T-----CAACAGATGAAGATTAGCAGCCCCTGGACAGCACAG---------------------TCACATCTTG---TGATGGCTGCTTACT-CGGAATTTGGGTTTCGTACCAAAACC-------CAAATGTG---ACCCAAA----ATATACA-------ATTTGCTATAT------------------ATTTCCATGTA--TAT-------------------GGATTGTTTAGTAGAGTGTCTCAGCTGAGCCACAACTGGAAT
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77403170 327 - 124281992 gagatttgcactttttt--taaaaactccagcaggtactttgatgc-ccagccaggactgagaacaactgAGTGGGAACACACAGAAAGTTCATAAACAGAGACTGTAGATTAGGACCTTGTTTGCAAAAAGGAACCTCCCAGAGCAAA-T-----AAACAGATGAAGATCAGCAGCCCCATGACAGCACAG---------------------TCACATCTTGTGATGATGGCTCCTTACTGGAGAATTTGGGTTTTGTATCAAAACC-------CAAGTGTG---ACCCAAA----ATATACA-------ATTTGCTATCT------------------ATTTCTATGTA--TGT-------------------TGATTGTTTAGTACAGTGTCTCAGCTGAGCCACAACTGGAAT
i calJac3.chr9              C 0 C 0
s mm10.chr10                126846009 291 + 130694993 GTTGTTTTGTTTTTTTT--TTTTAGCTCCAACAGGGAATCTGATGCTACAG---AGACCGGAAAAGGCTGGTGTGGGACATGGAGAAAGTTCATAAACAGAGACTTGAAAGCAGG-------------------ACTCCACAGAACAAACT-----TCACAGGTAAAGGGCTGCTGACCC---ATAAAGAAG---------------------GCTC----TG---TGATAGCTTCATACTGAGGAATATGGTTTCCATATCAAGACC-------C-----TG---GGCT-------ATAAACA-------GTTTGTGATAT------------------ATTTTTATGTAATTGT-------------------TAATTGTTTAATATAGCATTCCAGTTGAGCCAAAGTCAGCAT
i mm10.chr10                C 0 I 4039
s canFam3.chr10              67294239 409 -  69331447 gagaTTTTACACTCTTTAAAaaaaacttcaccaggaattctgatgt-gcagccagtattgggaatcactCACTTACAAGGGGGAGAAAACTTAGAAATAAAGACCAGAGATCAGAACCCTGTTTTCAGAAAGAAACATTCCAGAGTGGA-TTGACCTGACAGTTGAAGATCAGCAGGACCTGGACAGCACAGACAAAGCAACCTGCATTACCTCCATGACCTG---CAATAGCTCTGTACTGGAAAACTCAGTTTTTGTATCAAAACCatgtatttatatatgtatacacaaaacttatatacatatatgtgtttgttatattgcgtatacaatgtatacatatatgtgta--tatGACAATGACCATAGTAAGGTCATTGTTTAGTAGAGCATC-CAGCTGAGCCAAAACAGGAAT
i canFam3.chr10             I 1391 C 0

a score=275038.000000
s hg38.chr12_GL383550v2_alt     75503 82 +    169178 GCAAAGTCTAGCTcctcgctactcccaagatgtagtccttagaccagcaacagcagcataacctgggagcttgttaagaagg
s panTro4.chr12              31311623 82 + 134246214 GCAAAGTCTAGCTcctcgctactcccaagatgtagtccttagaccagcaacagcagcataacctgggagcttgttaagaagg
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78506667 82 - 136387465 GCAAAGTCTAGCTcctcgctactcccaagatgtagtccttagaccagcaacagcagcataacctgggagcttgttaagaagg
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54723875 82 + 123690457 GCAAAGTCTAGCTcctcgctaatcccaagatgtagtccttagaccagcaacagcagcataacctgggagcttgttaggaagg
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79617675 82 - 134985053 GCAAAGTCTAGCTccttgctactcccaagatgtagtccttagaccagcagcagcagtataacctgggagtttgttaggaagg
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80719765 82 - 137757926 GCAAAGTCTAGCTccttgctactcccaagatgtagtccttagaccagcagcagcagtataacctgggagtttgttaggaagg
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78665710 82 - 132286798 GCAAAGTCTAGCTCCTCGCTACTCCCAAGATGTAGTCTTTagaccagcagcagcagtatAACCTGGGAGTTTGTTAGGAAGG
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74592611 82 - 128539186 GCAAAGTCTAGCTcctcgctactcccaagatgtagtccttagaccagtagcagcattataacctgggagtttgttaggaagg
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77403497 69 - 124281992 GAGAAGTCTAACTCCTTGCTCCtccga-------------agaccagtaacagcagtacaacctgggagcctgttaggaaca
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67294648 80 -  69331447 GCAAAGTCTAGTTcctcactactc--aaaacataatccttagatcagcagcaaaggcatcacctgggagcttgttgaaatgg
i canFam3.chr10             C 0 I 1608
e mm10.chr10                126846300 4039 + 130694993 I

a score=2021191.000000
s hg38.chr12_GL383550v2_alt     75585 662 +    169178  
s panTro4.chr12              31311705 664 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78506749 660 - 136387465  
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54723957 660 + 123690457  
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79617757 660 - 134985053  
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80719847 660 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78665792 660 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74592693 660 - 128539186  
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77403566 656 - 124281992  
i calJac3.chr9              C 0 C 0
e mm10.chr10                126846300 4039 + 130694993 I
e canFam3.chr10              67294728 1608 -  69331447 I

a score=1409633.000000
s hg38.chr12_GL383550v2_alt     76247 426 +    169178 CTAAAGAATAAGGGGT-----TTGGTGTGTGGG----TGTTTGGAAAGAAAAGAGGAGACAAGAACAATGGATTATGTGCTTTAAGCCCCAGTAG-AAAAA--------------------------------ATTAGGAAGTC-AAAAGGTGAAGAAGCTTGTTTTCCTGAAAGACTTAGTGAGACTCAGGTTACCAAATGGTACTCTACCAGAACCCACATGATAAATGACAGCAACCAAGATAGGAGAAATCTTCCCACTGCTGTCCAAAAC-----------CTGACAAAACCAGGACTGCTAGGTTTGCAAGCAATGACAGATAGCAGCCTCAGCACATAAACTAGCACTTTGAAGGAGGGTAACAA-CCAGAGGACAATGATGAGGCTCCTTGTCAAGGCAGGCAGCAGTAGCAGCAGAA---CTAGAATTGTTCTTATGTATACATGCCTGGCACAGAGCAGGTACTTGACAAATAC
s panTro4.chr12              31312369 430 + 134246214 CTAAAGAATAAGGGGT-----TTGGTGTGTGGGTGTTTGTTTGGAAAGAAAAGAGGAGACAAGAACAATGGATTATGTGCtttaagccccagtag-aaaaa--------------------------------attaggaagtc-aaaaggtgaagaagcttgttttcctgaaagacttagtgagactcaggttaccaaatggtactctaccagaacccacatgataaatgacagcaaccaagataggcgaaatcttcccactgctgtccaaaac-----------CTGACAAAACCAGGACTGCTAGGTTTGGAAGCAATGACAGATAGCAGCCTCAGCACATAAACTAGCACTTTGAAGGAGGGTAACAA-CCAGAGGACAATGATGAGGCTCCTTGTCAAGGCAGACAGCAGTAGCAGCAGAA---CTAGAATTGTTCTTATGTATACAtgcctggcacagagcaggtacttgacaaatac
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78507409 426 - 136387465 CTAAAGAATAAGGGGT-----TTGGTGTGTGGG----TGTTTGGAAAGAAAAGAGGAGACAAGAACAATGGATTATGTGTTTTAAGCCCCAGTAA-AAAAA--------------------------------ATTAGGAagtc-aaaaggtgaagaagctttgtttcctgaaagacttagtgagactcaggttaccaagtggtactctaccagaacccacatgataaatgacagcaaccaagataggagaaatcttcccactgctgtccaaaac-----------ccgacacaaccaggactgctaggTTTGGAAGCAATGACAGACAGCAGCCTCAGCACATAAACTAGCACTTTGAAGGAGGGTAACAA-CCAGAGGACAATGATGAGGCTCCTTGTCAAGGCAGGCAGCAGTAGCAGCAGAA---CTAGAATTGTTCTTATGTATACAtgcctggcacagagcaggtacttgacaaacac
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54724617 426 + 123690457 CTAAAGAATAAGGGGT-----TTGGTGTGTGGG----TGTTTGGAAAGAAAAGAGGAGACAGGAACAATGGATTATGTGCTTTAAGCCCCAGAAG-AAAAA--------------------------------ATTAGGAAGTC-AAATGGTGAAGAAGCTTTTTTTCCTGAAAGACTTAGTGAGACTCAAGTTACCAAGTGGTACTCTACCAGAACCCACGTGATAAATGACAGCAACCAAGATAGGAGAAATCTTCCCACTGCTGTCCAAAAC-----------CTGACACAACCAGGACTGCTGGGTTTGGAAGCAATGACAGATAGCAGCCTCAGCACATAAACTAGCGCTTTAAAGGAGAGTAACAA-CCAGAGGACAATGATGAGGCTCCTTGTCAAGGCAGGCAGCAGTAGCAGCAGAA---CTAGAATTGTTCTTATGTATACAtgcctggcacacagcagatacttgacaaatac
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79618417 421 - 134985053 CTAAAGAATAAGGGTT-----TTGGTGTGTGGG----TGTTTGGAAAGAAAAGAGGAGACAAGAACTGTGGATTATACGTTTTAAGCCCCAGTAG-AAAAA--------------------------------ATCAGGAAGTC-AAAAGGTAAAAAAGCTTTTTTTCCTGAAAGACTTAGTGAGACTCAGGTTACCAAGTGGTACTCTACCAGAACCCACATAATAAACGACAGCAACCAAGATAGGAGAACTCTTCCCACTGCTGTACAAAAC-----------CTGACACAACCAGGACTGCTGGGTTTGGAAGCAATGACAGATAGCAGCCTCAGCACATAAACTAGCACTTTGAAGGAGGGTAACAA-CCAGAGGACAATGATGAGgctccttgtcaaggcaggcagcagtagcagca--------agaattgttcttatgtatacatgcctggcacacagcaggtacttgacaaatac
i rheMac3.chr11             C 0 I 5965
s macFas5.chr11              80720507 421 - 137757926 CTAAAGAATAAGGGTT-----TTGGTGTGTGGG----TGTTTGGAAAGAAAAGAGGAGACAAGAACTGTGGATTATACGTTTTAAGCCCCAGTAG-AAAAA--------------------------------ATCAGGAAGTC-AAAAGGTAAAAAAGCTTTTTTTCCTGAAAGACTTAGTGAGACTCAGGTTACCAAGTGGTACTCTACCAGAACCCACATAATAAACGACAGCAACCAAGATAGGAGAACTCTTCCCACTGCTGTACAAAAC-----------CTGACACAACCAGGACTGCTGGGTTTGGAAGCAATGACAGATAGCAGCCTCAGCGCATAAACTAGCACTTTGAAGGAGGGTAACAA-CCAGAGGACAATGATGAGgctccttgtcaaggcaggcagcagtagcagca--------agaattgttcttatgtatacatgcctggcacacagcaggtacttgacaaatac
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78666452 426 - 132286798 CTAAAGAATAAGGGGT-----TTGGTGTGTGGG----TGtttggaaagaaaagaggagacaaGAACTATGGATTATACGTTTTAAGCCCCAGTAG-AAAAA--------------------------------ATCAGGAAGTC-AAAAGGtaaaaaagctttttttcctgaaagactTAGTGAGACTCAGGTTACCAAGTGGTACTCTACCAGAACCCACATAATAAACGACAGCAACCAAGATAGGAGAACTCTTCCCACTGCTGTACAAAAC-----------CTGATACAACCAGGACTGCTGGGTTTGGAAGCAATGACAGATAGCAGCCTCAGCACATAAACTAGCACTTTGAAGGAGGGTAACAA-CCAGAGGACAATGATGAGGCTCCTTGTCAAGGCAGGCAGCAGTAGCAGCAGAA---ATAGAATTGTTCTTATGTAtacatgcctggcacacagcaggtacttgacaaatac
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74593353 426 - 128539186 CTACAGAATAAGGGGT-----TTGGTGTGTGGG----TGTTTGGAAAGAAAAGAGGAGACAAGAACAATGGATTATGCGTTTTAAGCTCCAGTAG-AAAAA--------------------------------ATTAGGAAGTC-AAAAGGTAAAGAAGCTTTTTTTCCTGAAAGACTTAGTGAGACTCAGGTTACCAAGTGGTACTCTACCAGAACCCACATAATAAACGATAGCAACCAAGATAGGAGAACTCTTCCCACTGCTGTACAAAAC-----------CTGACACAACCAGGACTGCTAGGTTTGGAAGTAATGACAGATAGCAGCCTCAGCACATAAACTAGCACTTTGAAGGGGGGTAACAA-CCAGAGGACAATGCTGAGGCTCGTTGTCAAGGCAGGCAGCAGTAGCAGCAGAA---ATAGAATTGTTCTTATGTATACAtgcctagcacacagcaggtacttgacaaaaac
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77404222 425 - 124281992 CTAAAGAATAAGGGGG-----TTGGTATGTGGG----TGTTTGGAAAGAAAA---GAGACAAGAACAATGGATGATGTATTTTAAGCCCCAATAGAAAAAA--------------------------------ATTATGAAGTCAAAAAGGTGAAGGAGCTTTTTTTCCTGAAAGACTTAGTGAGACTCAGGTTACCAAGTGGTACTCTACCAGAACCCACATAACAGACGACAGCAACAAAAATAGGAGAAATCTTCCCACTGCTGCCCAAAAC-----------CTGACACAACCAGGACTGCTGAGTTTGGAAGCAATGACAGATAGCGGCCTTAGCACATATACTAGCACTTTGAAGGAGGATAACAA-TCAAAGGGCAATGATGAGGCTCCTTGTCAATGCTGGCAGCAGCAGCAGCAGAA---CTAGAATTGTCCCTAGGTATACCtgcctggcacacaaaaggtatttgacaaatac
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67296336 439 -  69331447 CCAAAAAAAGGGGGGTGGTGGTTAGTACCGGGG----TATTTGAAAAGAAAGGAGGAGACAAGTCAAA--------GAGCTCTAAGAT-CAATAG-AAAAACAatgatgatgatgatgatgatgatgatgatgatgatgaAGTC-AACAGGCAAAGGAG-TACTTTTCCTAAAAGACTCAGTGAGA-----------------------ACCTGAACCCAGATGACAAACCAAGACA---GAGGAAAGAGAAGTC-TCCCACTGCTCTCCACAACCCAGCACTGTGCTAACACAGCCAGGGCCGCTGGG-TGAAAAGCACTGATGGAGAGCGGCCTTGGCACATACATTGGCATTTTCAAGACGTGTATCAAGCTCAGGGGCAATGGTAAGGCTCCTTGTCAAGGCAGCCA-CAATACCAGCAGAACGCCTAGAATTGTTCCTAAGTGCATgtgcctggcacataccaggcatccaacaaatat
i canFam3.chr10             I 1608 C 0
e mm10.chr10                126846300 4039 + 130694993 I

a score=8633.000000
s hg38.chr12_GL383550v2_alt     76673 3 +    169178 ctg
s panTro4.chr12              31312799 3 + 134246214 ctg
i panTro4.chr12             C 0 I 1310
s ponAbe2.chr12              78507835 3 - 136387465 ctg
i ponAbe2.chr12             C 0 I 1310
s nomLeu3.chr11              54725043 3 + 123690457 ctg
i nomLeu3.chr11             C 0 I 1310
s macFas5.chr11              80720928 3 - 137757926 ttg
i macFas5.chr11             C 0 I 4293
s papAnu2.chr11              78666878 3 - 132286798 ttg
i papAnu2.chr11             C 0 I 6157
s chlSab2.chr11              74593779 3 - 128539186 ctg
i chlSab2.chr11             C 0 I 1592
s calJac3.chr9               77404647 3 - 124281992 ctg
i calJac3.chr9              C 0 I 1305
s canFam3.chr10              67296775 3 -  69331447 ctg
i canFam3.chr10             C 0 I 2819
e mm10.chr10                126846300 4039 + 130694993 I
e rheMac3.chr11              79618838 5965 - 134985053 I

a score=474833.000000
s hg38.chr12_GL383550v2_alt     76676 399 +    169178 aaaaaggccagatagcaaatgttttaggctttgtgT-tgatatggtttggctgtgtccccacccaaatctcatcttgaatttccacgtgctgtgggagggacccagtgggaggtaattgaatcatggggggg-caggtcttccccatgctgttctcatgatagtgaataagtttcacgagatctgatggttttaaaaagaggagtttccctgcacaagctctcttctcttgtctgccaccatgtaagatgtgcctttcatctttcacctttcaccacaattatgaggcctccccagccatgtggaactgtaagttcaataaacctctttcttttgtagattgcccagtctcaggtatgtctttatcagcagcatgaaaacggattTTAGCATGAAAAGGCA
s panTro4.chr12              31314112 400 + 134246214 aaaaaggccagatagcaaatgttttaggctttgtgT-tgatatggtttggctgtgtccccacccaaatctcatcttgaatttccacgtgctgtgggagggacccagtgggaggtaattgaatcatggggggggcaggtcttccccatgctgttctcatgatagtgaataagtttcacgagatctgatggttttaaaaagaggagtttccctgcacaagctctcttctcttgtctgccaccatgtaagatgtgcctttcacctttcacctttcaccacaattatgaggcctccccagccatgtggaactgtaagttcaataaacctctttcttttgtagattgcccagtctcaggtatgtctttatcagcagcatgaaaacggattTTAGCATGAAAAGGCA
i panTro4.chr12             I 1310 C 0
s ponAbe2.chr12              78509148 399 - 136387465 aaaaaggccagatagcaaatgttttaggctttgtgT-tgatatggtttggctgtgtccccacccaaatctcatcttgaatttccacatgctgtgggagggacccagtgggaggtaattgaatcatggggggg-caggtcttccccatgctgttctcatgatagtgaataagtttcatgagatctgatggttttaaaaaggggagtttccctgcacaagctctattctcttgtctgccaccatgtaagatgtgcctttcacctttcacctttcaccacaattatgaggcctccccagccatgtggaactgtaagttcaataaacctctttcttttgtagattgcccagtctcaggtatgtctttatcagcagcacgaaaacggattTTAGCATGAAAATACA
i ponAbe2.chr12             I 1310 C 0
s nomLeu3.chr11              54726356 393 + 123690457 aaaaaggccagatagcaaatgttttaggctttgtgtgtgatatggtttggctgtgtccccacccaaatctcatcttgaatttccacatgctgtggaggggacccagtgggaggtaatggactcatggtgagg-caggtcttccccatgctgttctcatgatagtgaatacatttcacaagatctgatggttttaaaaaggggagtttccctgcacaagctctcttctcttgtctgccaccatgtaagatgtgc-------ctttcacctttcaccacaattatgaggcctccccagccatgtggaactgtaagttcaataaacctctttcttttgtagattgcccagtctcaggtatgtctttatcagcagcatgaaaatgggctTTAGCATGAAAATACA
i nomLeu3.chr11             I 1310 C 0
s chlSab2.chr11              74595374 389 - 128539186 aaaaaggccagatagcaaatgttttcgactttgtgtgtgatatggtttggctgtgtccccacccaaatctcatcttgaatttccacatgctgttggagggacccagtgggaggtaattgaatcatgggggg--caggtcttccccatgctgttcccatgacagtgaataagtttcatgagatctgatggttttacaaaggggagtttccctgcacaagctctcttctcttgtctgccaccatgtaagatgtgcctttcacctttcacctttcaccatgattgtgaggcctccccagccacctggaactataagttcaataaacctctttcttttgtagattacccagtgtaaggtacgtctttatcagcagcatgaaaacagacc----------aataca
i chlSab2.chr11             I 1592 C 0
s calJac3.chr9               77405955 380 - 124281992 aaaaaggccagacagcaaatgttttaggctttgagtgtgatatggtttggttctgtccccacccaaacttcatcttgaatttccacatgttgtgggaaggacccagagggaggtaattgaatcatggagg---caggtcttccccatactgttctcatgatagtaaatgagtttcacaagatatgatggttttaaaaaggggagtttccctgcataagctcacttttcttgtctgccaccatgtgagacatgcttttcacc--------ttcaccatgattgtgaagcctccccagccatacaaaactgtaagtccaggaaacctctttcttttgtagattgcccagtctccggtatgtctctatcagcagcatgaaaacagact----------aataca
i calJac3.chr9              I 1305 C 0
e mm10.chr10                126846300 4039 + 130694993 I
e canFam3.chr10              67296778 2819 -  69331447 I
e papAnu2.chr11              78666881 6157 - 132286798 I
e macFas5.chr11              80720931 4293 - 137757926 I
e rheMac3.chr11              79618838 5965 - 134985053 I

a score=1380087.000000
s hg38.chr12_GL383550v2_alt     77075 902 +    169178  
s panTro4.chr12              31314512 902 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78509547 906 - 136387465  
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54726749 903 + 123690457  
i nomLeu3.chr11             C 0 C 0
s chlSab2.chr11              74595763 902 - 128539186  
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77406335 913 - 124281992  
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67299597 901 -  69331447  
i canFam3.chr10             I 2819 I 87
e mm10.chr10                126846300 4039 + 130694993 I
e papAnu2.chr11              78666881 6157 - 132286798 I
e macFas5.chr11              80720931 4293 - 137757926 I
e rheMac3.chr11              79618838 5965 - 134985053 I

a score=6128.000000
s hg38.chr12_GL383550v2_alt     77977 5 +    169178 TTCCC
s panTro4.chr12              31315414 5 + 134246214 TTCCC
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78510453 5 - 136387465 TTCCT
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54727652 5 + 123690457 TTCCT
i nomLeu3.chr11             C 0 C 0
s chlSab2.chr11              74596665 5 - 128539186 TTCCT
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77407248 5 - 124281992 TTCCT
i calJac3.chr9              C 0 C 0
e mm10.chr10                126846300 4039 + 130694993 I
e canFam3.chr10              67300498 87 -  69331447 I
e papAnu2.chr11              78666881 6157 - 132286798 I
e macFas5.chr11              80720931 4293 - 137757926 I
e rheMac3.chr11              79618838 5965 - 134985053 I

a score=43232.000000
s hg38.chr12_GL383550v2_alt     77982 61 +    169178 AATACCCGATTTTC--Ttgtgtgtgtgtgtgtgtgtgtgtgtgt----TCTGAttc----ttttttctttt
s panTro4.chr12              31315419 63 + 134246214 AATACCCGATTTTC--Ttgtgtgtgtgtgtgtgtgtgtgtgtgtg--tTCTGAttc----ttttttctttt
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78510458 65 - 136387465 AATACCCAATTTTCTTTtgtgtgtgtgtgtgtgtgtgtgtgtgtg--tTCTGAttc----ttttttttttt
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54727657 67 + 123690457 AATACCCAATTTTC--TTTCgtgtatgtgtgtgtgtttgtgtgtg--tTCTGATTCCGTttcttttttttt
i nomLeu3.chr11             C 0 C 0
s chlSab2.chr11              74596670 65 - 128539186 AATACTCAATTTTC--TtgtatgtgtgtgtgtgtgtgtatgtgtgtATTCTGATTC----TTTTTTATTTT
i chlSab2.chr11             C 0 I 66
e mm10.chr10                126846300 4039 + 130694993 I
e canFam3.chr10              67300498 87 -  69331447 I
e calJac3.chr9               77407253  0 - 124281992 C
e papAnu2.chr11              78666881 6157 - 132286798 I
e macFas5.chr11              80720931 4293 - 137757926 I
e rheMac3.chr11              79618838 5965 - 134985053 I

a score=8310.000000
s hg38.chr12_GL383550v2_alt     78043 16 +    169178 ttatactttaggttct
s panTro4.chr12              31315482 16 + 134246214 ttatactttaggttct
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78510523 16 - 136387465 ttatactttaggttct
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54727724 16 + 123690457 taatactttaggttct
i nomLeu3.chr11             C 0 C 0
e mm10.chr10                126846300 4039 + 130694993 I
e canFam3.chr10              67300498 87 -  69331447 I
e calJac3.chr9               77407253  0 - 124281992 C
e chlSab2.chr11              74596735 66 - 128539186 I
e papAnu2.chr11              78666881 6157 - 132286798 I
e macFas5.chr11              80720931 4293 - 137757926 I
e rheMac3.chr11              79618838 5965 - 134985053 I

a score=398438.000000
s hg38.chr12_GL383550v2_alt     78059 466 +    169178 agggtaca--tgtgcacaatgtgcaggtttgttacatatgcatacatgtgccatgttggtgtgctgcaccagttaactcatcatttacattaggtatatctcctaatgctatccctcccccctccctccaccccaggacaggccccagtgtgtgatgttccccaccctgtgtccaagtgttatcattgttcaattcccacctgtaagtgagaacatgcagtgtttggttttctgtccttgcgacagtttgctgagaatgatggtttccagcttcatccatgtccctacaaaggacacaaactcatccttttttatggctgcatagtattccgtggtgtatatgtgccacattttcttaatccagtctatcattgatggacatttgggttggttccaagtctttgctattgtgaatagtgctgcaataaacacacatatgcatgtgtctttatagcagcatgattcata
s panTro4.chr12              31315498 465 + 134246214 agggtaca--tgtgcacaatgtgcaggtttgttacatatgcatacatgtgccatgttggtgtgctgcacccgttaactcatcatttacattaggtatatctcctaatgctatccctcccccctccccccaccccaggacaggccccagtgtgtgatgttccccaccctgtgtccaagtgttatcattgttcaattcccacctgtaagtgagaacatgcagtgtttggttttctgtccttgcgatagtttgctgagaatgatggtttccagctttatccatgtccctacaaaggacacaaactcatccttttt-atggctgcatagtattccgtggtgtatatgtgccacattttcttaatccagtctatcattgatggacatttgggttggttccaagtctttgctattgtgaatagtgctgcaataaacatacatgtgcatgtgtctttatagcagcatgatttata
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78510539 464 - 136387465 agggtaca--tgtgcacaatgtgcaggtttgttacatatgtatacatgtgccatgttggtgtgctgcaccccttaactcgtcatttacattaggtatatctcctaatgctatccctcccccctccc-ccaccccaggacaggccccagtgtgtgatcttccccaccctgtgtccaagcgttatcattgtgcaattcccacctatgagtgagaacatgtggtgtttggttttctgtccttgtgatagtttgctgaaaatgatggtttccagcttcatccatgtccctacaaaggacatgaactcatccttttt-atggttgcatagtattccatggtgtatatgtgccacatttccttaatccagtctatcattgatggacatttgggttggttccaagtctttgctattgtgaatagtgccgcaataaacatacctgtgcatgtgtctttatagcagcatgatttata
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54727740 466 + 123690457 agggtaca--tgtgcacaatgtgcaggtttgttacatatgtatacatgtgccatgttggtgtgctgcacccgttaactcgtcatttacattaggtatatctcctaatgctatccctctcccctccccccaccccaggacaggccccagtgtgtgattttccccatcctgtgtccaagtgttctcattgttcaattcccacctatgagtgagaacatgcggtatttggttttctgtccttgagatagtttgctgagaatgatggtttccagcttcatccatgtccctacaaaggacatgaactcatccttttttatggctgcatagtattccatggtgtatatgtgccacattttattaatccagtctatcattgctagacatttgggttggttccaagtctttgctattgtgaatagtgccacaataaacctacatgtgcatgtgtctttatagcagcatgatttata
i nomLeu3.chr11             C 0 C 0
s chlSab2.chr11              74596801 468 - 128539186 agggtacatgtgtgcacaatgtgcaggtttgttacatacgtatacatgtgccatgttggtgtgctgcacctgttaacttgtcatttacattaggtatatctcctaatgctattcctcccccctctccacaccccatgacagaccccagtgtgtgatgttccccaccctgtgtccaagtgttctcattgttcaattcccacctatgagtgagaacatgcagtgtttggttttctgtccttgagatagtttggtcagaatgatggtttccagcttcatccatatccctacaaaggacatgaactcatccttttttatggctgcatagtattccatggtgtatatgtgccacattttcttaatccagtctatcattgatggacatttgggttggttccaagtctttgctattgtgaataatgctgtaataaacatatgtgtgcaagtgtatttatggtagcatgatttata
i chlSab2.chr11             I 66 C 0
e mm10.chr10                126846300 4039 + 130694993 I
e canFam3.chr10              67300498  87 -  69331447 I
e calJac3.chr9               77407253   0 - 124281992 C
e papAnu2.chr11              78666881 6157 - 132286798 I
e macFas5.chr11              80720931 4293 - 137757926 I
e rheMac3.chr11              79618838 5965 - 134985053 I

a score=8710.000000
s hg38.chr12_GL383550v2_alt     78525 9 +    169178 atcctttgg
s panTro4.chr12              31315963 9 + 134246214 atcctttgg
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78511003 9 - 136387465 atcctttgg
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54728206 9 + 123690457 atcctttgg
i nomLeu3.chr11             C 0 C 0
s chlSab2.chr11              74597269 9 - 128539186 atcctttgg
i chlSab2.chr11             C 0 C 0
s canFam3.chr10              67300585 9 -  69331447 ATTTTTCCT
i canFam3.chr10             I 87 C 0
e mm10.chr10                126846300 4039 + 130694993 I
e calJac3.chr9               77407253 0 - 124281992 C
e papAnu2.chr11              78666881 6157 - 132286798 I
e macFas5.chr11              80720931 4293 - 137757926 I
e rheMac3.chr11              79618838 5965 - 134985053 I

a score=145430.000000
s hg38.chr12_GL383550v2_alt     78534 92 +    169178 aatacccTATTTTCTATAGGTATCAAATATCCTTTTCAAGATTTTATTACATTTTTACAATGATTTACACCATTTATAATTATGATATTATG
s panTro4.chr12              31315972 92 + 134246214 aatacccTATTTTCTACAGGTATCAAATATCCTTTTCAAGATTTTATTACATTTTTACAATGATTTACACCATTTATAATTATGATATTATG
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78511012 92 - 136387465 aatacccTATTTTTTATAGGTATCAAATATCCTTTTCAAGATTTTGTTACATTTTTACAATGATCTACACCATTTATAATTATGATATTATG
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54728215 92 + 123690457 aatacccTATTTTCTATAGGTATCAAGTATCCTTTTCAAGATTTTGTTACATTTTTACAATGATTTACACCATTTATAATTATGATATTATG
i nomLeu3.chr11             C 0 C 0
s chlSab2.chr11              74597278 92 - 128539186 aatacccTATTTTCTATAGGTATCAAATATCATTTTCAAGATTTTGTGACATTTTTACAATGATTTACACCATTTATAATTATGATATTATG
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77407253 92 - 124281992 AATACCCTATTTCCTATAGGTATCAAATATTCTTTTCCAGATTTTGTGACATTTTTACAATGATTTACAGCATCTATAATTATGATATCATG
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67300594 89 -  69331447 AGTACTCTACTTTGTTT---TATCAGATACTATTTTCCAGATTTTGTGACATTTTAACAATGATTCACAGTATTTATTATTATGATGTCTTG
i canFam3.chr10             C 0 I 101
e mm10.chr10                126846300 4039 + 130694993 I
e papAnu2.chr11              78666881 6157 - 132286798 I
e macFas5.chr11              80720931 4293 - 137757926 I
e rheMac3.chr11              79618838 5965 - 134985053 I

a score=4555.000000
s hg38.chr12_GL383550v2_alt     78626 4 +    169178 GGCt
s panTro4.chr12              31316064 4 + 134246214 GGCt
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78511104 4 - 136387465 GGCt
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54728307 4 + 123690457 GGCt
i nomLeu3.chr11             C 0 C 0
s chlSab2.chr11              74597370 4 - 128539186 GGCt
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77407345 4 - 124281992 AGTT
i calJac3.chr9              C 0 I 95
e mm10.chr10                126846300 4039 + 130694993 I
e canFam3.chr10              67300683 101 -  69331447 I
e papAnu2.chr11              78666881 6157 - 132286798 I
e macFas5.chr11              80720931 4293 - 137757926 I
e rheMac3.chr11              79618838 5965 - 134985053 I

a score=3200398.000000
s hg38.chr12_GL383550v2_alt     78630 3851 +    169178  
s panTro4.chr12              31316068 3843 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78511108 3842 - 136387465  
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54728311 3887 + 123690457  
i nomLeu3.chr11             C 0 C 0
s chlSab2.chr11              74597374 3854 - 128539186  
i chlSab2.chr11             C 0 I 1830
e mm10.chr10                126846300 4039 + 130694993 I
e canFam3.chr10              67300683  101 -  69331447 I
e calJac3.chr9               77407349   95 - 124281992 I
e papAnu2.chr11              78666881 6157 - 132286798 I
e macFas5.chr11              80720931 4293 - 137757926 I
e rheMac3.chr11              79618838 5965 - 134985053 I

a score=224912.000000
s hg38.chr12_GL383550v2_alt     82481 439 +    169178 cataatccatcacataaacagaaccaatgacaaaaaccacatgattatctcaatagatgcagaaaagtccttcaacaacaaaattcaacagcctttcatgctagaaactctcaataaactaggtattgatggaatgtatctcaaaataatagctatttacaacaaacccacatcaaatatcatactcaatgggcaaaactgaaagcattccctttgaaaaccggcacaagacaaggacgccctctctcaccactgctattcaacatagtattggaattctggccagagcaatcaggcaagagaaagaaataaagtgtattcaattaggaaaagaggaagtcaaattgtctc----tgcagatgacatgattctatatttagaaaaacccattgtctcagcccaaaatctccttaagctgataagcaactttagcaaagtctca
s panTro4.chr12              31319911 439 + 134246214 cataatccatcacataaacagaaccaatgacaaaaaccacatgattatctcaatagatgcagaaaagtccttcaacaacaaaattcaacagcctttcatgccagaaactctcaataaactaggtattgatggaacgtatctcaaaataatagctatttacaacaaacccacatcaaatatcatactcaatgggcaaaactgaaagcattccctttgaaaaccggcacaagacaaggacgccctctctcaccactgctattcaacatagtattggaattctagccagagcaatcaggcaagagaaagaaataaagtgtattcaattaggaaaagaggaagtcaaattgtctc----tgcagatgacatgattctatatttagaaaaacccattgtctcagcccaaaatctccttaagctgataagcaactttagcaaagtctca
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78514950 439 - 136387465 cataatccatcacataaacagaaccaatgacaaaaaccacatgattatctcaatagatgcagaaaagaccttcaacaacaaaattcaacagcctttcatgctagaaactctcaataaactaggtattgatggaacgtgtctcaaaataagagctatttatgacgaacccacaccaaatatcatactcaatgggcaaagctgaaagcatcccctttgaaaaccagcacaagacaaggatgccctctctcaccactcctattcaacatggtattggaattctggccagagcaatcaggcaagagaaagaaataaagtgtattcaattaggaaaaaaggaagtcaaattatctc----tgcagatgacatgattgtatatttagaaaatcccattgcctcagcccaaaatctccttaagctgatacgcaacttcagcaaagtctca
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54732198 436 + 123690457 cgtaatccatcacataaacagaaccaatgacaaaaaccacatgattatctcagtagatgcagaaaaggccttcagcaacaaaattgaacagactttcatgctagaaactctcaataaactaggtattgatggaacgtatctcaaaataatagctatttatgacaaacccacaccaaatatcatacctaatgggcaaaactgaaagcattccctttgaaaactggc-----acaaggatgccctctctcaccactcctatttaacatagtattggaattctggccagggcaatcaggcaagagaaagaaataaagtgtagtcaattaggaaaagaggaagtcaaattgtctctgtttgcagatgacatgattgtatatttagaaaaccccattgtctcagcccaaaatctccttaagctgataagcaacttcagc--agtctca
i nomLeu3.chr11             C 0 C 0
e mm10.chr10                126846300 4039 + 130694993 I
e canFam3.chr10              67300683 101 -  69331447 I
e calJac3.chr9               77407349  95 - 124281992 I
e chlSab2.chr11              74601228 1830 - 128539186 I
e papAnu2.chr11              78666881 6157 - 132286798 I
e macFas5.chr11              80720931 4293 - 137757926 I
e rheMac3.chr11              79618838 5965 - 134985053 I

a score=117491.000000
s hg38.chr12_GL383550v2_alt     82920 155 +    169178 ggatacaaag-----tcaatgtgcaaaaatc-----acaagcattcctatacaccattaatagacaaac----agccaaatcatgagtgaactcccatttgcaattactac-aagagaataaaatacctaggaatctaacttacaagggatgtgaaggacctcttcaagg
s panTro4.chr12              31320350 155 + 134246214 ggatacaaag-----tcaatgtgcaaaaatc-----acaagcattcctatacaccattaatagacaaac----agccaaatcatgagtgaactcccatttgcaattactac-aagagaataaaatacctaggaatctaacttacaagggatgtgaaggacctcttcaagg
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78515389 154 - 136387465 ggatatgaag-----tcaatgtgcaaaaatc-----acaagcattcctatacaccattaatagacaaac----agccaaatcatgagtgaacgcccattcgcaattactac-aagagaataaaatacctaggaatctaacttacaagggatgtgaa-gacctcttcaagg
i ponAbe2.chr12             C 0 I 404
s nomLeu3.chr11              54732634 154 + 123690457 ggatacaaag-----tcaatgtg-aaaaatc-----acaagcattcctatacaccattaatagacagag----agccaaatcatgagtgaactcctattcacaattactac-aagagaataaaatacctaggaatctaacttacaagggatgtgaaggacctcttcaagg
i nomLeu3.chr11             C 0 I 1
s macFas5.chr11              80725224 170 - 137757926 ggatgcaaggctggttcaacatatgcaaatcaataaactagcattcttatacaccaataacagacaaacagagagccaaatcatgaatgaactccctttcacaattgcttcaaagagaataaaatacctaggaatacaacttacaagggatgtgaaggacctcttcaagg
i macFas5.chr11             I 4293 C 0
e mm10.chr10                126846300 4039 + 130694993 I
e canFam3.chr10              67300683 101 -  69331447 I
e calJac3.chr9               77407349  95 - 124281992 I
e chlSab2.chr11              74601228 1830 - 128539186 I
e papAnu2.chr11              78666881 6157 - 132286798 I
e rheMac3.chr11              79618838 5965 - 134985053 I

a score=288664.000000
s hg38.chr12_GL383550v2_alt     83075 348 +    169178 -gaactagaaaccactgctcaatgaaat-aaagaggatacaaacaaatggaagaacattccctgctcatgggtaggaagaatcaatatcatgaaaatggccatactgtccatggtaatttagagattcaatgctatccccatcaagctatcatggactttcttcacacgattag-aaaaaactactttaaatttcatatgggacc-aaaaaagagcccacattgccaagacaaccctaagccaaaagaacaaagctggaggcatcacgctacctgacttcaaactatattacaaggctacagtaaccaaaacagcatggtactggtaccaaaacagataaatagagcaatgg
s panTro4.chr12              31320505 348 + 134246214 -gaactagaaaccactgctcaatgaaat-aaagaggatacaaacaaatggaagaacattccctgctcatgggtaggaagaatcaatatcatgaaaatggccatactgtccatggtaatttagagattcaatgctatccccatcaagctatcacagactttcctcacacgattag-aaaaaactactttaaatttcatatgggacc-aaaaaagagcccgcattgccaagacaaccctaagccaaaagaacaaagctggaggcatcacgctacctgacttcaaactatattacaaggctacagtaaccaaaacagcatggtactggtaccaaaacagataaatagagcaatgg
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78515947 349 - 136387465 -gaactataaaccactgctcaatgaaataaaagaggatacaaacaaatcgaagaaaattccatgctcatgggtaggaagaatcaatatcatgaaaatgaccatactgtccatggtaatttagagattcaatgctatccccatcaagctaccaatgactttcttcacgcaattag-aaaaaaccactttaaatttcatatgggacc-aaaaaagagcccgcattgccaagacaatcctaagccaaaagaacaaagctggaggcatcacgctacctgacttcaaactatgttacaaggctacagtaaccaaaacagcatggtactggtaccaaaacagataaatagagcaatgg
i ponAbe2.chr12             I 404 C 0
s nomLeu3.chr11              54732789 350 + 123690457 -gaactacaaaccactgctcaatgaaataaaagaggacacaaacaaatggaagaacattccatgctcataaataggaagaatcaatattgtgaaaatggccatactgtccatggtaatttagagattcaatgctatccccatcaagctatcacagactttcttcacataattag-aaaaaactactttaaatttcatatgggaccaaaaaaagagcctgcattgccaagacaatcctaagccaaaagaacaaagctggaggcatcatgctacctgacttcaaactatattacaaggctacagtaaccaaaacagcatggtaccggtaccaaaacagataaatagaccaaccg
i nomLeu3.chr11             I 1 C 0
s macFas5.chr11              80725394 351 - 137757926 aaaactacaaactaccactcaatgaaataaaagaggacacaaacaaatggaagaacattccatgctcatggataggaagaatcaatatcgtgaaaatggccatactgcccaaggtaatttatagattcaatgccatccccattaagctaccaatgacactcttcacagaattggaaaaaaactactttaaagttcatatggaacc-aaaaaagagcccacattgccaagacaatcctaagccaaaagaacaaagctggaggcatcacgctacttgacttcaaactatactacaaggctacagtaaccaaaacagcatgatactggtaccaaaacagagatatagaccaatgg
i macFas5.chr11             C 0 C 0
e mm10.chr10                126846300 4039 + 130694993 I
e canFam3.chr10              67300683 101 -  69331447 I
e calJac3.chr9               77407349  95 - 124281992 I
e chlSab2.chr11              74601228 1830 - 128539186 I
e papAnu2.chr11              78666881 6157 - 132286798 I
e rheMac3.chr11              79618838 5965 - 134985053 I

a score=3160.000000
s hg38.chr12_GL383550v2_alt     83423 3 +    169178 aac
s panTro4.chr12              31320853 3 + 134246214 aac
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78516296 3 - 136387465 aac
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54733139 3 + 123690457 aac
i nomLeu3.chr11             C 0 C 0
s macFas5.chr11              80725745 3 - 137757926 aac
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78673038 3 - 132286798 aaa
i papAnu2.chr11             I 6157 C 0
e mm10.chr10                126846300 4039 + 130694993 I
e canFam3.chr10              67300683 101 -  69331447 I
e calJac3.chr9               77407349 95 - 124281992 I
e chlSab2.chr11              74601228 1830 - 128539186 I
e rheMac3.chr11              79618838 5965 - 134985053 I

a score=1379620.000000
s hg38.chr12_GL383550v2_alt     83426 773 +    169178  
s panTro4.chr12              31320856 773 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78516299 772 - 136387465  
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54733142 772 + 123690457  
i nomLeu3.chr11             C 0 C 0
s macFas5.chr11              80725748 774 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78673041 775 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74603058 776 - 128539186  
i chlSab2.chr11             I 1830 C 0
e mm10.chr10                126846300 4039 + 130694993 I
e canFam3.chr10              67300683 101 -  69331447 I
e calJac3.chr9               77407349  95 - 124281992 I
e rheMac3.chr11              79618838 5965 - 134985053 I

a score=1322726.000000
s hg38.chr12_GL383550v2_alt     84199 572 +    169178  
s panTro4.chr12              31321629 573 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78517071 573 - 136387465  
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54733914 554 + 123690457  
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79624803 588 - 134985053  
i rheMac3.chr11             I 5965 C 0
s macFas5.chr11              80726522 585 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78673816 589 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74603834 577 - 128539186  
i chlSab2.chr11             C 0 C 0
e mm10.chr10                126846300 4039 + 130694993 I
e canFam3.chr10              67300683 101 -  69331447 I
e calJac3.chr9               77407349  95 - 124281992 I

a score=-462.000000
s hg38.chr12_GL383550v2_alt     84771 1 +    169178 A-
s ponAbe2.chr12              78517644 1 - 136387465 A-
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54734468 2 + 123690457 aC
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79625391 1 - 134985053 A-
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80727107 1 - 137757926 A-
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78674405 1 - 132286798 a-
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74604411 1 - 128539186 A-
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77407444 1 - 124281992 A-
i calJac3.chr9              I 95 C 0
e mm10.chr10                126846300 4039 + 130694993 I
e canFam3.chr10              67300683 101 -  69331447 I
e panTro4.chr12              31322202 0 + 134246214 C

a score=183646.000000
s hg38.chr12_GL383550v2_alt     84772 49 +    169178 GAAATGAGGCTTGTGGAGCACTTCTCCATTAATCTGTAAAATTTATTCT
s panTro4.chr12              31322202 49 + 134246214 GAAATGAGGTTTGTGGAGCACTTCTCCATTAATCTGTAAAATTTATTCT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78517645 49 - 136387465 GAAATGAGGTTTGTGGAGCACTTCTCCATTAATCTGTAAAATTTATTCT
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54734470 49 + 123690457 GAAATGAGGTTTGTGGAGCACTTCTCCACTAATCTGTAAAATTTATTCT
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79625392 49 - 134985053 GAAATGAAGTTTGTGGAGCACTTCTCCATTAATCTGTAAAATTTATTCT
i rheMac3.chr11             C 0 I 5
s macFas5.chr11              80727108 49 - 137757926 GAAATGAAGTTTGTGGAGCACTTCTCCATTAATCTGTAAAATTTATTCT
i macFas5.chr11             C 0 I 5
s papAnu2.chr11              78674406 49 - 132286798 gaaatgaagttTGTGGAGCACTTCTCCATTAATCTGTAAAATTTATTCT
i papAnu2.chr11             C 0 I 5
s chlSab2.chr11              74604412 49 - 128539186 GAAATGAAGTTTGTGGAGCACTTTTCCATTAATCTCTAAAATTTATTCT
i chlSab2.chr11             C 0 I 5
s calJac3.chr9               77407445 49 - 124281992 GAAATGAGGTTTGTGGAGCACTTCTCCATTAATCTTTAAAATTTATTCT
i calJac3.chr9              C 0 I 5
s canFam3.chr10              67300784 49 -  69331447 GAAATTAAGTATATGGAGCATTTCTCCATTATTCTTTAAAATGTATACT
i canFam3.chr10             I 101 I 5
e mm10.chr10                126846300 4039 + 130694993 I

a score=241840.000000
s hg38.chr12_GL383550v2_alt     84821 68 +    169178 TCATAGAATGAAGATGCTCTCTGGATAGCAAAACAGTAAGTAACATGCTTTTTTGTCACATAAATTGA
s panTro4.chr12              31322251 68 + 134246214 TCATAGAATGAAGATGCTCTCTGGATAGCAAAACAGTAAGTAACATGCTTTTTTGTCACATAAATTGA
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78517694 68 - 136387465 TCATAGAATGAAGATGCTCTCTGGATAGCAAAACAGTAAGTAACATGCTTTTTTGTCGCATAAATTGA
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54734519 68 + 123690457 GCATAGAATGAAGATGCTCTCTGGATAGCAAAACAATAAGTAACACGCTTTTTTATTGCATAAATTGA
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79625446 68 - 134985053 TTATAAAATGAAGATGCTCTATGGATAGCAAAACAGTAAGTAACATGCCTTTTTGTTGCATAAATTGG
i rheMac3.chr11             I 5 C 0
s macFas5.chr11              80727162 68 - 137757926 TTATAAAATGAAGATGCTCTATGGATAGCAAAACAGTAAGTAACATGCCTTTTTGTTGCATAAATTGG
i macFas5.chr11             I 5 C 0
s papAnu2.chr11              78674460 68 - 132286798 TTATAAAATGAAGATGCTCTATGGATAGCAAAACAGTAAGTAACATGCCTTTTTGTTGCATAAATTGG
i papAnu2.chr11             I 5 C 0
s chlSab2.chr11              74604466 68 - 128539186 TTATAAAATGAAGATGCTCTACGCATAGCAAAACAGTAAGTAACATGCTTTTTTGTTGCATAAATTGA
i chlSab2.chr11             I 5 C 0
s calJac3.chr9               77407499 64 - 124281992 TTACAGAATGAAGATGCTCTCTGGGTAGCAAAGT----AGTCACATGCTGTTTTGCTGTACAAATTGA
i calJac3.chr9              I 5 C 0
s mm10.chr10                126850339 68 + 130694993 TCCTAGCATGAAGACGGTCTCTGGGTAGCAAAGCAGCCTGTGGCATGCCGTTGTGATACGTAAGCTCA
i mm10.chr10                I 4039 I 382
s canFam3.chr10              67300838 68 -  69331447 TTATAGAATGAAAATGCTTTCTGTGTGGCAAAACACTCTGTATGTTGTCATTTTGTTGTATAAATTCA
i canFam3.chr10             I 5 C 0

a score=1927849.000000
s hg38.chr12_GL383550v2_alt     84889 567 +    169178  
s panTro4.chr12              31322319 571 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78517762 568 - 136387465  
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54734587 557 + 123690457  
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79625514 567 - 134985053  
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80727230 567 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78674528 569 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74604534 571 - 128539186  
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77407563 549 - 124281992  
i calJac3.chr9              C 0 C 0
s mm10.chr10                126850789 586 + 130694993  
i mm10.chr10                I 382 I 167
s canFam3.chr10              67300906 549 -  69331447  
i canFam3.chr10             C 0 C 0

a score=222161.000000
s hg38.chr12_GL383550v2_alt     85456 67 +    169178 TACGAAGGAAAA-TGCCCGCCATTTTGGGTGTTTATATCACTCTTCTCAAGAATGTAAATGCCTTCCA---------------
s panTro4.chr12              31322890 68 + 134246214 TACGAAGGAAAAATGCCCGCCATTTTGGGTGTTTATATCACTCTTCTCAAGAATGTAAATGCCTTCCA---------------
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78518330 68 - 136387465 TACGAAGGAAAAATGCCCACCATTTGGGGTGTTTATATCGCTCTTCTTAATAATGTAAATGCCTTCCA---------------
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54735144 68 + 123690457 TACGAAGGAAAAATGCCCGCCATTTTGGGTGTTTATATCACTCTTCTCAAGAATGTAAATGCCTTCCA---------------
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79626081 68 - 134985053 TACGAAGGAAAAGTGCCCGACATTTTGGATGTTTATATCACTCTTCTCACAAATGTAAATGCCTTCCA---------------
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80727797 68 - 137757926 TACGAAGGAAAAGTGCCCGACATTTTGGGTGTTTATATCACTCTTCTCACAAATGTAAATGCCTTCCA---------------
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78675097 68 - 132286798 TACAAGGGAAAAGTGCCCGACATTTTGGGTGTTTATATCACTCTTCTCACAAATGTAAATGCCTTCCA---------------
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74605105 68 - 128539186 TACGAAGCAAAAGTGCCCGACATTTTGGGTGTTTATATCACTCTTCTCACAAATGTAAATGCCTTCCA---------------
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77408112 68 - 124281992 TATGAAGGAAAAGTGCCTGCCATTTTGGGTGTTTATATCACTCTTCTCAAGAATGTAAATGCCTTCCA---------------
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67301455 76 -  69331447 -------CAGTAGTGTCAGCCACGTGAGGCCTTTATATCACTCTTCTCACGAATGTAAACGCCTTCCAGCTACCTGGTCGGGA
i canFam3.chr10             C 0 C 0
e mm10.chr10                126851375 167 + 130694993 I

a score=662689.000000
s hg38.chr12_GL383550v2_alt     85523 193 +    169178 GTCATCAGATCACTGATTGATAGCCCCAccaaagcaaaactagggt-----gctgttaagaagaaggatag----ctg---------gtaggaggcaagaatagcaaatgttcactgcaATAATTAATTTTTAAAATATGGGCAAAATACCACTTAAAAGCAAGCCAATTGTGGGAATCCCTCATTCAAGAAGTTGAATAAGGCCACCAAG
s panTro4.chr12              31322958 193 + 134246214 GTCATCAGATCACTGATTGATAGCCCCAccaaagcaaaactagggt-----gctgttaagaagaaggatag----ctg---------gtaggaggcaagaatagcaaatgttcactgcaATCATTAATTTTTAAAATATGGGCAAAATACCACTTAAAAGCAAGCCAATTGTGGGAATCCCTTATTCAAGAAGTTGAATAAGGCCACCAAG
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78518398 193 - 136387465 GTTGTCAGATCACTGATTGATAGCCCCAccaaagcaaaactagggt-----gctgttaagaagagagatag----ctg---------gtaggaggcaagaatagcaaatgttcactgcaATCATTAATTTTTAAAATATGGGCAAAATACCACTTAAAAGCAAGCCAATTGTGGGAATCCCTTATTCAAGAAGTTGAATAAGGCCACCAAG
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54735212 193 + 123690457 GTCATCAGATCACTGATTGATAGCCCCAccaaagcaaaactggggt-----gctgttaagaagagggatag----ctg---------gtaggagacaagaatagcaaatgttcactgcaATCATTAATTTTTAAAATATGGGCAAAATACCACTTAAAAGCAAGCCAATTATGGGAATCCCTTTTTCAAGAAGTTGAAAAAGGCCACCAAG
i nomLeu3.chr11             C 0 I 232
s rheMac3.chr11              79626149 187 - 134985053 GTCATCAGGTCACTGATTGATAGCCCCACAAAAGCAAAACTAGGGT-----GCTGTTAAGAAGAGGGATAG----CTA---------GTAGGAGGCAAGAAAAGCAAATGTTCACTGCAATCATTAATTTTTAAA--ACGGGTAAAATACCACTTAAAAGCAAGCCAGTTATGGGAATCCCTTATTCAAGAAGT----AAAGGCCACCAAG
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80727865 187 - 137757926 GTCATCAGGTCACTGATTGATAGCCCCAccaaagcaaaactagggt-----gctgttaagaagagggatag----cta---------gtaggaggcaagaaaagcaaatgttcactgcaATCATTAATTTTTAAA--ACGGGTAAAATACCACTTAAAAGCAAGCCAGTTATGGGAATCCCTTATTCAAGAAGT----AAAGGCCACCAAG
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78675165 187 - 132286798 GTCATCAGGTCACTGATTGATAGCCCCACAAAAGCAAAACTAGGGT-----GCTGTTAAGAAGAGGGATAG----CTA---------GTAGGAGGCAAGAAAAGCAAATGTTCGCTgcaatcattaatttttaaa--acggGTAAAATACCACTTAAAAGCAAGCCAGTTATGGGAATCCCTTATTCAAGAAGT----AAAGGCCACCAAG
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74605173 187 - 128539186 GCCATCAGGTCACTGATTGATAGCCCCACAAAAGCAAAACTAGGGT-----GCTGTTAAGAAGAGGGATAG----CTA---------GTAGGAGGCAAGAAAAGCAAATGTTCACTGCAATCATTAATTTTTAAA--ATGGGCAAAATACCACTTAAAAGCAAGCCAGTTATGGGAATCCCTTATTCAAGAAGT----AAAGGCCACCAAG
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77408180 198 - 124281992 GTCATCGGATCACTGATTGATAGTCCCGCCAAATTAAAACTAGGGT-----GCTGTTAAAAAGAGGGATAG----CTGAGCACTGGAGAAGGAGGCAAGAATAGCAAATGTTCACTGCAATCATTAATTTTTAAAACATGGGCAAAATACCACTTAAAAGCAAGCCAGTTATGGGAATCCCTTATTCAAGAAGT----AAAGGCCACCAAG
i calJac3.chr9              C 0 C 0
s mm10.chr10                126851542 192 + 130694993 gccTTTGTATCACCGACTGACACTTTC-CAGACGCTGTGCTGGGGTTAGCGGTCATTAGGTAACTGGCAAGCCCTCTG---------AACAGAAATAACGATGATAAGTGTCAACCCCAGCCATTCGTTTTTACA--GCTGG--AGACACCTCTT-AAAGCGAGCCAGCCACAGGAATCCTTTATTCAATATGT----AGAGGCTGCTAAG
i mm10.chr10                I 167 C 0
s canFam3.chr10              67301531 158 -  69331447 GTCATCATGTCCCTGATTGACAGtcccatcaaagcaaaactgggat-----gctgttaagaagaaggatag----cag---------atgggaggcaaaaatgataaatctctactGAAATTA----ATTTTAAAACATGGGCAAAATACCACAT-AAAGCATGTCAATTATAGGAATGCC------------------------------
i canFam3.chr10             C 0 C 0

a score=228420.000000
s hg38.chr12_GL383550v2_alt     85716 68 +    169178 AAAGTCGTTCATAACACAAAGCCTG--TTACCTCTTTAGTTC------TGGTTATATAATTGAAGACACATATAC------A
s panTro4.chr12              31323151 68 + 134246214 AAAGTTGTTCATAACACAAAGCCTG--TTACCTCTTTAGTTC------TGGTTATATAATTGAAGACACATATAC------A
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78518591 68 - 136387465 AAAGTTGTTCATAACACAAAGCCTG--TTACCTCTTTAGTTC------TGGATATATAATTGAAGACACATACAC------A
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54735637 68 + 123690457 AAAGTTGTTCATAACACAAAGCCTG--TTACCTCTTTAGTTC------TGGTTATATAATTGAAGACACATACAT------A
i nomLeu3.chr11             I 232 C 0
s rheMac3.chr11              79626336 74 - 134985053 AAATTTGTTCATAACACAAAGCCTG--TTACCTTTTTAGTTC------TGGTTATATAATTGAAGACACATACACATACATA
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80728052 74 - 137757926 AAATTTGTTCATAACACAAAGCCTG--TTACCTTTTTAGTTC------TGGTTATATAATTGAAGACACATACACATATATA
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78675352 74 - 132286798 AAATTTGTTCATAACACAAAGCCTG--TTACCTTTTTAGTTC------TGGTTATATAATTgaagacatatacacatacata
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74605360 74 - 128539186 AACGTTGTTCATAACACAAAGCCTG--TTACCTTTTTAGTTC------TGGTTATATAATTGAAGACACATACACATACATA
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77408378 70 - 124281992 AAAGTTACTCATAACACAAAACCAGAATTACCTCTTTAATTC------TGGTTATATAATTGAAGACACATACAC------A
i calJac3.chr9              C 0 C 0
s mm10.chr10                126851734 57 + 130694993 GATGGCATCC-----------TCTG--TCATCTTTATATTTC------TGGTCACATAAGTAGAGACGCATACAC------A
i mm10.chr10                C 0 I 1825
s canFam3.chr10              67301689 67 -  69331447 -------TTCAAGACACAAAAGCTA--GCATGTCTTTAATTCTGGTCATGGTCATGTAAATGAacatacacacac------a
i canFam3.chr10             C 0 C 0

a score=727622.000000
s hg38.chr12_GL383550v2_alt     85784 225 +    169178 ------------TACACACCCAAAAAATATGAGTAAAAATTAT--AAAGTATGTACATGTGAATCATATTCAGCCTAATAATACAGGAAGttcattc-atttatttatccacaaatatttagacactgttctaaataataaggatgcatcactgaaaaaaaaatgtttttaaagccctgccttgcggaacttaca-tattaattagagggagacaaacaaaagacaaaat----aagtaggttat
s panTro4.chr12              31323219 224 + 134246214 ------------TACACACCCAAAAA-TATGAGTAAAAATTAT--AAAGTATGTACGTGTGAATCATATTCAGCCTAATAATACAGGAAGttcattc-atttatttatccacaaatatttagacactgttctaaataataaggatgcatcactgaaaaaaaaatgtttttaaagccctgccttgcagaacttaca-tattaattagagggagacaaacaaaagacaaaat----acgtaggttat
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78518659 220 - 136387465 ------------TACACACCCAAAAA-TATGAGTAAAAATTAT--AAAGTATGTAAGTGTGAATCATATTCAGCCTAATAATACAGGAAG----TTC-ATTTATTTATCCACAAATATTTagacactgttctaaataataaggatgcatcattgaaagaaaaatgtttttaaagccctgccttgcagaacttgta-tattaattagagggagacaaacaaaagacaaaat----aagtaggttat
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54735705 222 + 123690457 ------------TACACACCCAAAAA-TATAAGTAAAAATTAT--AAAGTATGTAAGTGTGAATCATATTCAGCCTAATAATACGGGAAGttcattc-atttatttatccacaaatacttagacactgttctaaataataaggatgcatcatt--aaaaaaaatgtttttaaagctctgccttgcagaacttata-tattaatcagagggagacaaacaaaagacaaaat----aagtaggttat
i nomLeu3.chr11             C 0 I 312
s rheMac3.chr11              79626410 223 - 134985053 ------------TACACATCCAAAAA-TATGAGTAAAAATTAT--AAAGTATGTAAGTGTGAATCATATTCAGCCTAATAATACAGAAAGttcattc-atttatttatccacaagtatttagacactgttctaactagtaaggatgcaacatcaaaaaaaaaa-gtttttaaagccctgccttgcagaacttata-tattaatcagagtgagacaaacaaaagacaaaat----aagtaggtttt
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80728126 223 - 137757926 ------------TACACATCCAAAAA-TATGAGTAAAAATTAT--AAAGTATGTAAGTGTGAATCATATTCAGCCTAATAATACAGAAAGTTCATTC-ATTTATTTATCCACAAGTATTTagacactgttctaactagtaaggatgcaacatcaaaaaaaaaa-gtttttaaagccctgccttgcagaacttata-tattaatcagagtgagacaaacaaaagacaaaat----aagtaggtttt
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78675426 223 - 132286798 ------------tacacatccaaaaa-tatgagtaaaaattat--aaagtatgtaAGTGTGAATCATATTCAGCCTAATAATACAGAaagttcactc-atttatttatccacAAATATTTAGACACTGTTCTAACTAGTAAGGATGCAGCAtcgaaaaaaaaa-gtttttaaagcccTGCCTTGCAGAACTTATA-TATTAATCAgagggaaacaaacaaaagacaaaat----aagtaGGTTTT
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74605434 223 - 128539186 ------------TACACATCCAAAAA-TATGAGCAAAAATTAT--AAAGTATGTAAGTGTGAATCATATTCAGCCTAATAATACAGGAAGTTCATTC-ATTTATTTATCCACAAATATTTagacactgttctaactagtaaggatgcagcattgaaaaaaaaa-gtttttaaagccctgccttgcagaacttata-tattaatcagagggagacaaacaaaagacaaaat----aagtaggttat
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77408448 212 - 124281992 ------------TATATACCCAAAAA-TATGAGTAAAAATTAT--AAAGTA--------TGAATCATATTCAGCCCAATAATACAGGAAGTTCA-TC-ATTTATATATCCACAAATATTTagacactgttctaaataataaggatgcagcattggaaaaaaat-atttttaaagttctgccttgtaaaacttata-tattggtcaaagggagacaaac--aagacataat----aagtcggttgt
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67301756 241 -  69331447 cacacacacacacaTCCACCCAAAAG-TATAAATAAAAATTATGAAAAGTAAATAAGTTTGAATCATATTCAGCCTAAAAATATAAGGGGttcattcaattcattcatctacaagtatttaggcattattctagatactaaggatacagcaccgaaaaagatg---tttttaattcctgcctcatgacacttatatttttagtcggagagagactaacaagagataaaataaacaagtaaattat
i canFam3.chr10             C 0 C 0
e mm10.chr10                126851791 1825 + 130694993 I

a score=742034.000000
s hg38.chr12_GL383550v2_alt     86009 221 +    169178 gtaatatcttagaaggtgataattgctacagagaaaagcaaataagggaagactgatag-------ggagtaccaggtcagggctgtgaatctaaagagagtgg-caggaaagatcttactgagatgacagtggagcaaagacttgtaggaagagagggagtaagtcaggcaaatatctgaaggaaagtattccaggaagaaggtattccagta-agtgcaaggcattg-------------------------------------------------------------------------------------------------------------a
s panTro4.chr12              31323443 221 + 134246214 gtaatatcttagaaggtgataattgctacagagaaaagcaaataagggaagactgatag-------ggagtaccaggtcagggctgtgaatctaaagagagtgg-caggaaagatcttactgagatgacagtggagcaaagacttgtaggaagagagggagtaagtcaggcaaatatctgaaggaaagtattccaggaagaaggtattccagta-agtgcaaggcattg-------------------------------------------------------------------------------------------------------------a
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78518879 221 - 136387465 gtaatatcttaggtggtgataattgctacagagaaaaacaaataagggaagattgatag-------ggagtaccaggtcagggctgtgaatctaaagagagtgg-cagggaagatcttactgagatgacagtggagcaaagacttgtaggaagagagggagtaagtgaggcaaatatctgaaggaaagtattccaggaagaaggtattccagta-agtgcaaggcattg-------------------------------------------------------------------------------------------------------------a
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54736239 221 + 123690457 gtaatatcttagaaggtgataattgctacagagaaaaacgaataagggaagactgatag-------ggagtaccaggtcagggctgtgaatctaaagagagtgg-caggaaagatcttactgagatgacagtggagcaaagacttgtaggaagagagggagtaagtcaggcaaatatctgaaggaaagtattctaggaagaaggtattccagta-agtgcaaggcattg-------------------------------------------------------------------------------------------------------------a
i nomLeu3.chr11             I 312 C 0
s rheMac3.chr11              79626633 221 - 134985053 gtagtatcttagaaggtgataattgctacagagaaaaacaaataagggaagattgatag-------ggagtaccaggtcagggctataaatctaaagagagtgg-caggaaagatcttactgagatgacagtggaacaaagacttgtaggaagagagggagtaagtcaggtgaacatctgaaggaaagtgttacaggaagaagggattccagta-agtgcaaggcattg-------------------------------------------------------------------------------------------------------------a
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80728349 221 - 137757926 gtagtatcttagaaggtgataattgctacagagaaaaacaaataagggaagattgatag-------ggagtaccaggtcagggctataaatctaaagagagtgg-caggaaagatcttactgagatgacagtggaacaaagacttgtaggaagagagggagtaagtcaggtgaacatctgaaggaaagtgttacaggaagaagggattccagta-agtgcaaggcattg-------------------------------------------------------------------------------------------------------------a
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78675649 221 - 132286798 GTAGTATCTTAGAAGGTGATAATTgctacagagaaaaacaaataagggaAGATTGATAG-------GGAGTACCAGGTCAGGGCTATAAATCTAAAGAGAGTGG-CAGGAAAGATCTTACTGAGGTGACAGTGGAACAAAGACTTGTAGGAAGAGAGGGAGTAAGTCAGGTGAACATCTGAAGGAAAGTGTTACAGGAAGAAGGGATTCCAGTA-AGTGCAAGGCATTG-------------------------------------------------------------------------------------------------------------A
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74605657 218 - 128539186 gtagtatcttagaaggtgataattgctacagagaaaaacaaataagggaagactgatag-------ggagtaccaggtcagggctatgaattta---agagtgg-caggaaagatcttactgagatgacagtggaacaaagacttgcaggaagagagggagtaagtcaggcgaacatctcaaggaaagtattacaggaagaaggtattccagta-agtgcaaggcattg-------------------------------------------------------------------------------------------------------------a
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77408660 329 - 124281992 gtagtgtcttagaaggtgttcagtgctacagaaaaaaactaataagggaacactgatag-------ggaggaccatgtcagggctgtgaatttaaagagagtgg-caggaaagatcttattgagatgacaatggagcaaagacttgtaggaagagagagaataagtcaggc-aatatctgaaggaaagtattccaggaagaagctattccagca-agtgcaaggcattgagacaggtgtatacctgggatgttcaagagccacagaatggccagagcggctggagccattgcaatgagtggtggagagattggagggtgaggtcagaaataagagagca
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67301997 220 -  69331447 gtagcatcttagaagg-------tgctatagaaaaaaataaacaaaagaagactgatagcaggtaaggagtaccaggtcaagcttgcaaatgtaaagagattgattagggaaggcctcactgaggtgaccatggaggaaagacctgtaggcagagagtaagtcaggcaggcaggtatctggaggaaaaccttccaggaagaaggag---cagtagggtgcaaggcattg-------------------------------------------------------------------------------------------------------------a
i canFam3.chr10             C 0 I 104
e mm10.chr10                126851791 1825 + 130694993 I

a score=253160.000000
s hg38.chr12_GL383550v2_alt     86230 71 +    169178 gcctagtcacatgaggccttgtaggcc----------------------actgtgaagcctttgg-ctttttctctaagtgacatgggaaaccT
s panTro4.chr12              31323664 71 + 134246214 gcctagtcacatgaggccttgtaggcc----------------------actgtgaagcctttgg-ctttttctctaagtgacatgggaaaccT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78519100 71 - 136387465 gcctagtcacatgaggcctagtaggcc----------------------actgtgaagcctttgg-ctttttctctaagtgacatgggaaaccT
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54736460 71 + 123690457 gCCTAGtcacatgaggccttgtaggcc----------------------actgtgaagcctttgg-ctttttctctaagtgacatgggaaaccT
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79626854 71 - 134985053 gcctagtcacataaggccttgtaggcc----------------------accgtgaagcctttgg-ctttttctctaagtgacatgggaaaccC
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80728570 71 - 137757926 gcctagtcacataaggccttgtaggcc----------------------accgtgaagcctttgg-ctttttctctaagtgacatgggaaaccC
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78675870 71 - 132286798 GCCTAGTCACATAAGGCCTTGTAGGCC----------------------ACCGTGAAGCCTTTGG-CTTTTTCTCTAAGTGACATGGGAAACCC
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74605875 71 - 128539186 gcctagtcacataaggccttgtaggcc----------------------accgtgaagcctttgg-ctttttctctaagtgacatgggaaaccC
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77408989 93 - 124281992 gcctagtcacataaggccttgtagtctggtcacataaggctacataaagactgtgaagcctttgg-ctttttctccgagtgagatgggaaaccC
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67302321 71 -  69331447 gccaggtcacaacaggccttgtagacc----------------------actg-gaagcctctgatttttttctctaagtgagatggggaaacc
i canFam3.chr10             I 104 I 975
e mm10.chr10                126851791 1825 + 130694993 I

a score=535189.000000
s hg38.chr12_GL383550v2_alt     86301 151 +    169178 ATGCTGCAGAGAATTAATGTCACACCCAAAAATTTATCCTTGTCTTGAATCATCTTTCTATTCCAAAACCTGTCAA--ACTAAGATATTCTCTTCCCTCTAGCTCTCAAAGCCTATCTCTACTCTTTCTAGACGACCAAAGATTTCTGCAATA
s panTro4.chr12              31323735 151 + 134246214 ATGCTGCAGAGAATTAATGTCACACCCAAAAATTTATCCTTGTCTTGAATCATCTTTCTATTCCAAAACCTGTCAA--ACTAAGACATTCTCTTCCCTCTAGCTCTCAAAGCCTATCTCTACTCTTTCTAGACTACCAAAGATTTCTGCAATA
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78519171 151 - 136387465 ATGCTGCAGAGAATTAATGTCCCACCCAAAAATTTATCCTTGTCTTGAATCATCTTTCTATTCCAAAACCTGTCAA--ACTAAGACATTCTCTTCCCCCTAGCTCTCAAAGCCTATCTCTACTCTTTCTAGACTACTAAAGATTTCCGCAATA
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54736531 151 + 123690457 ATGCTGCAGAGAATTAATGTCCCACCCAAAAATGTATCCTTGTCTTGAATCATCTTTCTATTCCAAAACCTGTCAA--ACTAAGACATTCTCTTCCCCCTAGCTCTCAAAGCCTATCTCTACTCTTTCTAGACTACTAAAGATCTCTGCAATA
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79626925 151 - 134985053 ACGTTGCAGAGAATTAATGTCCCACCCAAAAATTTATCCTTCTTTTGAATCATCTTTCTAGGCCAAAACCTGTCAA--ACGAAGACATTCTCTTCCCCCTTGCTCTCAAAGCCTATCTCTACTCTTTCTAGACTACTAAAGATTTCTGCAATA
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80728641 151 - 137757926 ACGTTGCAGAGAATTAATGTCCCACCCAAAAATTTATCCTTCTTTTGAATCATCTTTCTAGGCCAAAACCTGTCAA--ACGAAGACATTCTCTTCCCCCTTGCTCTCAAAGCCTATCTCTACTCTTTCTAGACTACTAAAGATTTCTGCAATA
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78675941 151 - 132286798 ACGTTGCAGAGAATTAATGTCCCACCCAAAAATTTATCCTTCTTTTGAATCATCTTTCTAGGCCAAAACCTGTCAA--ACGAAGACATTCTCTTCCCCCTTGCTCTCAAAGCCTATCTCTACTCTTTCTAGACTACTAAAGATATCTGCAATA
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74605946 151 - 128539186 ACATTGCAGAGAATTAATGTCCCACCCAAAAATTTATCCTTCTTTTGAATCATCTTTCTAGGCCAAAACCTGTCAA--ACGAAGACATTCTCTTCCCCCTTGCTCTCAAGGCCTATCTCTACTCTTTCTAGACTACTAAAGATTTCTGCAATA
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77409082 151 - 124281992 ATGCTGCAGAGAATTAATGCCTCACCCAAAAATTTATCCTTCTCTTGAATCATCTTTGTATTTCAAAACCTGTCAA--ACTAAGACATTCTTCTCCCcatagctctcaaagcctatctctactctttccagaccactaaagatttctgcaata
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67303367 153 -  69331447 ACACCACACAGAATTAATGCCCCAACTAAGAATTCATCCTTCCCTTGAATCATCTTTCTATTCCAAAATCTATTAAATATCAACACATTCTTTTATCCCTGGCTCTCAAGGCCTATCTGCACATTTACTAGATGACTAGAGATTTCTGCAATA
i canFam3.chr10             I 975 I 194
e mm10.chr10                126851791 1825 + 130694993 I

a score=27331.000000
s hg38.chr12_GL383550v2_alt     86452 9 +    169178 GCCAGGCAT
s panTro4.chr12              31323886 9 + 134246214 GCCAGGCAT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78519322 9 - 136387465 GCCAGGCAT
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54736682 9 + 123690457 GCCAGGCAT
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79627076 9 - 134985053 GCCAGGTAT
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80728792 9 - 137757926 GCCAGGTAT
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78676092 9 - 132286798 GCCAGGCAT
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74606097 9 - 128539186 GCCAGGTAT
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77409233 9 - 124281992 gccaggcaa
i calJac3.chr9              C 0 C 0
e mm10.chr10                126851791 1825 + 130694993 I
e canFam3.chr10              67303520 194 -  69331447 I

a score=159017.000000
s hg38.chr12_GL383550v2_alt     86461 44 +    169178 TGTCTTCTTCCCA---TACATTCCTTTTTATGCTTAAGTTAGCCAGG
s panTro4.chr12              31323895 44 + 134246214 TGTCTTCTTGCCA---TACATTCCTTTTTATGCGTAAGTTAGCCAGG
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78519331 44 - 136387465 TGTCTTCTTCCCA---TACACTCCTTTTTCTGCTTAAGTTAGCCGGG
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54736691 44 + 123690457 TGTCttcttccca---tacattcctttttctgcttaagttagccagg
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79627085 44 - 134985053 TGTCTTCTTCCCA---TACATTCCTTTTTCTGCTTAAGTTAGCCAGG
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80728801 44 - 137757926 TGTCTTCTTCCCA---TACATTCCTTTTTCTGCTTAAGTTAGCCAGG
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78676101 44 - 132286798 TGTCTTCTTCCCA---TACATTCCTTTTTCTGCTTAAGTTAGCCAGG
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74606106 44 - 128539186 TGTCTTCTTCCCa---tacattcctttttctgcttaagttagccagg
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77409242 41 - 124281992 tgtcttc---cca---tacattcctttttctgcttaagttagccagg
i calJac3.chr9              C 0 C 0
s canFam3.chr10               2030115 47 +  69331447 TATCTTCTTCCCACATTATTTTTTTTTTTCTACTTAAGTTAGCCAGG
i canFam3.chr10             T 10507 C 0
e mm10.chr10                126851791 1825 + 130694993 I

a score=855351.000000
s hg38.chr12_GL383550v2_alt    86505 234 +    169178 CCATTTCTACTTCTTGCAACCAAATCATCTTAACTGATTAAATAATTAACTTTATCATTAGAAGAGAATTTGTAT---ATTATATAGATTGAAAGCAATATGCCTGGATAAGTTATTTTGTAGAAAATATGCTTGGTAAGGTATTGAATATTTAACATTAAAAAGCCAACTTTCAGTAGTGCATTTTAATCCTGTTAGACTGAAGGCATTTAGGCAAATCAGATGAAGAAGTAGCAA
s panTro4.chr12             31323939 234 + 134246214 CCATTTCTACTTCTTGCAACCAAATCATCTTAACTGATTAAATAATTCACTTTATCATTAGAAGAGAATTTGTAT---ATTATATAGATTGAATGCAATATGCCTGGATAAGTTATTTTGTAGAAAATATGCTTGGTAAGGTATTGAATATTTAACATTAAAAAGCCAACTTTCAGTAGTGTATTTTAATCCTGTTAGACTGAAGGCATTTAGGCAAATCAGATGAAGAAGTAGCAA
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12             78519375 234 - 136387465 CCATTTCTACTTCTTGCAACCAAATCATCTTAACTGATAAAATAATTAACTTTATCATTAGAAGAGAATTTGTAT---ATTATATAGCTTGAATGCAATATGCCTGGATAAGTTATTTTGTAGAAAATATGCTTGGTAAGGTATTGAATATTTGACATTAAAAAGCCAGCTTTCAGTAGTGCATTTTAATCCTGTTAGACTAAAGGCATTTAGGCAAATCAGATGAAGAGGTAGCAA
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11             54736735 234 + 123690457 ccatttctatttcatgcaaccaaatcatcttaactgataAAATAGTTCACTTTATCATTAGAAGAGAATTTGTGT---ATTATACAGATTGAATGCAGTATGCCTGGATAAGTTATTTTGTAGAAAATATGCTTGGTAAGGTATTGAATATTTAACATTAAAAAGCCAACTTTCAGTAGTGCATTTTAATCCTGTTAGACTAAAGGCATTTAGGGAAATCAGATGAAGAAGTAGCAA
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11             79627129 228 - 134985053 CCATTTCTACTTCTTGCAACCAAATCATCTTAATTGATAAAATAATTCACTTTACCATTAGAAGAGAATTTGTAT---ATTATATAGATTGAATGCAATATGCCTGGATACGTTGTTTTCTAGAAAATACGCTTGCTAAGGTATTTAAGGT------ATAAAAAGCCAACTTTCGGTAGTGCATTTTAATCCTGTTAGACTAAAGGCATTTAGGCAAATCAGATGAAGAAGTAGTAA
i rheMac3.chr11             C 0 C 0
s macFas5.chr11             80728845 228 - 137757926 CCATTTCTACTTCTTGCAACCAAATCATCTTAATTGATAAAATAATTCACTTTACCATTAGAAGAGAATTTGTAT---ATTATATAGATTGAATGCAATATGCCTGGATACGTTGTTTTCTAGAAAATACGCTTGCTAAGGTATTTAAGGT------ATAAAAAGCCAACTTTCGGTAGTGCATTTTAATCCTGTTAGACTAAAGGCATTTAGGCAAATCAGATGAAGAAGTAGCAA
i macFas5.chr11             C 0 C 0
s papAnu2.chr11             78676145 228 - 132286798 CCATTTCTACTTCTTGCAACCAAATCATCTtaattgataaaataattcactttatCATTAAAAGAgaatttgtat---attatatagatTGAATGCAATATGTCTGGATACGTTGTTTTCTAGAAAATACGCTTGCTAAGGTATTTAAGGT------ATAAAAAGCCAACTTTCGGTAGTGCATTTTAATCCTGTTAGACTAAAGGCATTTAGGCAAATCAGATGAAGAAGTAGCAA
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11             74606150 228 - 128539186 ccatttctacttcttgcaaccaaatcatcttaactgataAAATAATTCACTTTATCATTAGAAGAGAATTTGTAT---ATTATATAGATTGAATGCAATATACCTGGATACGTCATTTTCTAGAAAATACGCTTGCTAAGGTATTTAAAGT------ATAATAAGCCAACTTTCGATAGTGCATTTTAATCCTGTTAGACTAAAGGCATTTAGGCAAATCAGATGAAGAAGTAGCAA
i chlSab2.chr11             C 0 C 0
s calJac3.chr9              77409283 233 - 124281992 ccatttctatttcttgcaaccaaatcatcttaactgataAAATAATTCACTTTATCATTAGAAGGTAATTTGTAT---ATGATGTAGTTTGAATGCAATACACCTGGATAAGTTATTTTGTAGAAAATATGCTTGCTAAGGCATTGAATATTTGACACTTA-AAGTCATCTTTCAGTAGTACATTTTAATCCTGTTAGACTAAAGGCATTTAGACAAATCAGATGAAGAAGTAGAAA
i calJac3.chr9              C 0 C 0
s mm10.chr10                 3843857 237 - 130694993 cctcctcctcctcctTCAGTGAAATCATCTTAACTGGTAAAATAACTCACTCTTACCCTGGAGGAGAATACGGACCTGATTGTCTAGATCAAACATAATATGACAGAACCAGTTATTGTGTGGGAAATATGCTCTTAAAGATACTGAATATTTAACACGAAAGTGCCAGCGTTTGGTAGCATATTCCGATCTTGATAGATGAAAGGTATTTAGGTGAAGCCGATCGCGAAGCGGCAA
i mm10.chr10                n 1825 n 1825
s canFam3.chr10              2030162 233 +  69331447 CAGTTTCTATTTCTTGTAACCAGATCATCTTAACTGATAAAATAACTTAGTTTATCATTAGGGTAGGATCTGTAT---CTTGTACAGGTTGGACATAATATGCCTGGATCAGTTATTCTGTAAGGAATAGGCTTTTTAAGATA-TGACTGTATAACATAAAAATGACAGCTTTTGGTAACATATTTCAATTCTCATGGACTAAAGATGTTTAGGAAAATCAAACCAAGAAATAGAAA
i canFam3.chr10             C 0 C 0

a score=6750.000000
s hg38.chr12_GL383550v2_alt    86739 2 +    169178 TG
s panTro4.chr12             31324173 2 + 134246214 TG
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12             78519609 2 - 136387465 TG
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11             54736969 2 + 123690457 TG
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11             79627357 2 - 134985053 TG
i rheMac3.chr11             C 0 C 0
s macFas5.chr11             80729073 2 - 137757926 TG
i macFas5.chr11             C 0 C 0
s papAnu2.chr11             78676373 2 - 132286798 TG
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11             74606378 2 - 128539186 TG
i chlSab2.chr11             C 0 C 0
s calJac3.chr9              77409516 2 - 124281992 GG
i calJac3.chr9              C 0 C 0
s canFam3.chr10              2030395 2 +  69331447 TG
i canFam3.chr10             C 0 T 29593
e mm10.chr10                 3844094 1825 - 130694993 I

a score=813339.000000
s hg38.chr12_GL383550v2_alt    86741 267 +    169178 ggctgggtgc-agtagttcatgcctgtaatcccagagctttaggaggccaaggcaggatgatcacttgaagccaggaattggggaccagctggggcaacatagcaagatcctagctctacaaaaataaaa--------------aggtgtggtggcacattcctatagtcctagctacttaggaggctgaggtgggaggattgtttgagcccaggagttcaaaggctgcagtaagctaggatcacactactgcacaccagcctgggtgacagag--agactctg
s panTro4.chr12             31324175 267 + 134246214 ggctgggtgc-agtagttcatgcctgtaatcccagagctttaggaggccaaggcaggacgatcacttgaagccaggaattggggaccagctggggcaacatagcaagatcctagctctacaaaaataaaa--------------aggtgtggtggcacatgcctatagtcctagctacttaggaggctgaggtgggaggattatttgagcccaggagttcaaaggctgcagtaagctaggatcacactactgcacaccagcctgggtgacagag--agactctg
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12             78519611 256 - 136387465 ggctgggtgc-agtagttcatgcctgtaatcccagagctttaggaggccaaggcaggacgatcacttgaagccaggaattggggaccagctggggcaacatagcaagatcctagctctacaaaaataaaa--------------aggtgtgg-------------tagtcctagctacttaggaggctgaggtgggaggattgtttgagcccaggagttcaaaggctgcagtaagctaggatcacactactgcacaccagcctgggtgacagagaaagagtctg
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11             54736971 270 + 123690457 ggctgggtgcaagtagttcatgcctctaatcccagagctttaggaggccaaggcaggacgatcacttgaagccagaaattggggaccagctggggcaacatagcaagatcctagctctacaaaaataaaa--------------aggtgtggtggcacatgcctatagtcctagctacttaggaggctgaggtgggaggactgtttgagcccaggagttcaaaggctgcagtaagctaggatcacactactgcacaccagcctgggtgacagagaaagaccctg
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11             79627359 269 - 134985053 gactgggtgc-agtagttcatgcctgtaatcccagagctttaggaggccaaggcaggatgatcactttacgccagcagttggggaccagcctgggcaacatagcaagatcctagctctacaaaaataaaa--------------aggtgtggtggcacatgcctatagtcgtagctgcttaggaggttgaggtgggaggattgttcgagcccaggagttcaaaggctgcagtaagctaggatcacactactgcacaccagcctgggtgacagagtaagacactg
i rheMac3.chr11             C 0 C 0
s macFas5.chr11             80729075 269 - 137757926 gactgggtgc-agtagatcatgcctgtaatcccagagctttaggaggccaaggcaggatgatcacttgaagccagcagttggggaccagcctgggcaacatagcaagatcctagctctacaaaaataaaa--------------aggtgtggtggcacatgcctatagtcgtagctgcttaggaggttgaggtgggaggattgttcgagcccaggagttcaaaggctgcagtaagctaggatcacactactgcacaccagcctgggtgacagagtaagacactg
i macFas5.chr11             C 0 C 0
s papAnu2.chr11             78676375 269 - 132286798 GACTGggtgc-agtagttcatgcctgtaatcccagagctttaggaggccaaggcaggatgatcacttgaagccagcagttggggaccagcctgggcaacatagcaagatcctagctctacaaaaataaaa--------------aggtgtggtggcacatgcctatagtcctagctgcttaggaggttgaggtgggaggattgtttgagcccaggagttcaaaggctgcagtaagctagggTCAcactactgcacaccagcctgggggacagagtaagacactg
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11             74606380 269 - 128539186 gactgggtgc-agtagttcatgcctgtaatcccagagctttaggaggccaaggcaggatgatcacttgaagccagcagttggggaccagcccaggcaacatagcaagatcctagctctacaaaaataaaa--------------aggtgtggtggcacatgcctatagttctagctacttaggaggttgaagtgggaggattgtttgagcccaggagttcaaaggctgcagtaagctaggatcacactactgcacaccagcctgggtgacagagtaagaccctg
i chlSab2.chr11             C 0 C 0
s calJac3.chr9              77409518 283 - 124281992 ggctgggtgc-agcacttcgtgcctataatctcagagttttaggaggtcaaggcaggatgatcacttgaagccaggagttggagaccaccccaggcaacatagcaagatcctatctctacaaaaataaaataaaataatcagccaggtgtggtggcacatgcctatagtcctagctacttaggagactgaggtgggaggattgtttgagcgcaggagttcaaacgctgcagtaagctaggatcacactactacactccaggctgggtgacagagcaagaccctg
i calJac3.chr9              C 0 C 0
e mm10.chr10                 3844094 1825 - 130694993 I
e canFam3.chr10              2030397 29593 +  69331447 T

a score=4680703.000000
s hg38.chr12_GL383550v2_alt    87008 1413 +    169178  
s panTro4.chr12             31324442 1414 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12             78519867 1417 - 136387465  
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11             54737241 1406 + 123690457  
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11             79627628 1429 - 134985053  
i rheMac3.chr11             C 0 C 0
s macFas5.chr11             80729344 1429 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11             78676644 1434 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11             74606649 1427 - 128539186  
i chlSab2.chr11             C 0 C 0
s calJac3.chr9              77409801 1362 - 124281992  
i calJac3.chr9              C 0 C 0
s canFam3.chr10             67303714 1389 -  69331447  
i canFam3.chr10             I 194 I 231
e mm10.chr10                 3844094 1825 - 130694993 I

a score=39807.000000
s hg38.chr12_GL383550v2_alt    88421 10 +    169178 agcATCTATT
s panTro4.chr12             31325856 10 + 134246214 agcATCTATT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12             78521284 10 - 136387465 agcATCTATT
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11             54738647 10 + 123690457 AGCATCTATT
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11             79629057 10 - 134985053 agcATCTATT
i rheMac3.chr11             C 0 C 0
s macFas5.chr11             80730773 10 - 137757926 AGCATCTATT
i macFas5.chr11             C 0 C 0
s papAnu2.chr11             78678078 10 - 132286798 AGCATCTATT
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11             74608076 10 - 128539186 AGCATCTATT
i chlSab2.chr11             C 0 C 0
s calJac3.chr9              77411163 10 - 124281992 agcatttaTT
i calJac3.chr9              C 0 C 0
s canFam3.chr10             67305334 10 -  69331447 AGTATCTATT
i canFam3.chr10             I 231 C 0
e mm10.chr10                 3844094 1825 - 130694993 I

a score=111877.000000
s hg38.chr12_GL383550v2_alt     88431 30 +    169178 TTAAAAGATGGCCTGGATCTGGGAATTACA
s panTro4.chr12              31325866 30 + 134246214 TTAAAAGATGGCCTGGATCTGGGAATTACA
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78521294 30 - 136387465 TTAAAAGACGGCCTGGATCTGGGAATTACA
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54738657 30 + 123690457 TTAAAAGACGGCCTGcatcagagaaatgca
i nomLeu3.chr11             C 0 I 148
s rheMac3.chr11              79629067 30 - 134985053 TTAAAAGATGGCCTGGATCTGGGAATTACA
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80730783 30 - 137757926 TTAAAAGATGGCCTGGATCTGGGAATTACA
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78678088 30 - 132286798 TTAAAAGATGGCCTGGATCTGGGAATTACA
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74608086 30 - 128539186 TTAAAAGATGGCCTGGATCTGCGAATTACA
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77411173 30 - 124281992 TTCAAAGATAGCTTGGATCTGGGAATTACC
i calJac3.chr9              C 0 C 0
s mm10.chr10                126853616 30 + 130694993 TTAAAAGATGATTCAGATCTGAATTTTTTC
i mm10.chr10                I 1825 I 1
s canFam3.chr10              67305344 30 -  69331447 TTAAAACATAGCCTGGATCTGTGAATTTCA
i canFam3.chr10             C 0 C 0

a score=427499.000000
s hg38.chr12_GL383550v2_alt     88461 150 +    169178 CTGCTTTGATATC-ATTAGGGGTTTTATTCACCTGCCCATGGTGGACATTGCTAGCATGCTAAG-TTAATTCAAACTTTCATTCCAAAGACAGTTATGGTAGCATAAAATAAAGCTTCATCAAATGTTCCATTAATGACAATGGAAATTTTA
s panTro4.chr12              31325896 150 + 134246214 CTGCTTTGATATC-ATTAGGGGTTTTATTCACCTGCCCATGGTGGACATTGCTAGCATGCTAAG-TTAATTCAAACTTTCATTCCAAAGACAGTTATGGTAGCATAAAATAAAGCTTCATCAAATGTTCCATTAATGACAATGGAAATTTTA
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78521324 150 - 136387465 CTGCTTTGATATC-ATTAGGGGTTTTATTCACCTGCCCATGGTGGACTTCGCTAGCATGCTAAG-TTAATTCAGCCTTTCATTCCAAAGACAGTTATGGTAGCATAAAATAAAGCTTCACCAAATGTTCCATTAATGACAATGGAAATTTTA
i ponAbe2.chr12             C 0 C 0
s rheMac3.chr11              79629097 150 - 134985053 CTGCTTTGATAAC-ATTAGGGGTTTTATTCGCCTGCCCATAGTGGACATTGCTAGCATGCTAAG-TTAATTCAAACTTTCATTCCAAAGACGATTATGGTGGCATAAAATAAAGCTTCATCAAATGTTCCATTAATGACAATAGAAATTTTA
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80730813 150 - 137757926 CTGCTTTGATAAC-ATTAGGGGTTTTATTCGCCTGCCCATAGTGGACATTGCTAGCATGCTAAG-TTAATTCAAACTTTCATTCCAAAGACGATTATGGTGGCATAAAATAAAGCTTCATCAAATGTTCCATTAATGACAATAGAAATTTTA
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78678118 150 - 132286798 CTGCTTTGATAAC-ATTAGGGGTTTTATTCGCCTGCCCATAGTGGACATTGCTAGCATGCTAAG-TTAATTCAAACTTTCATTCCAAAGACGATTATGGTGGCATAAAATAAAGCTTCATCAAATGTTCCATTAATGacaatagaaatttta
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74608116 150 - 128539186 CTGCTTTGATAAC-ATTAGGGGTTTTATTCACCTGCCCATAGTGGACATTGCTAGCATGCTAAG-TTAATTCAAACTTTCATTCCAAAGACGATTATGGTGGCATAAAATAAAGCTTCATCAAATGTTCCATTAATGACAATAGAAATTTTA
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77411203 151 - 124281992 GTGCTCTGATACC-ATTAGGGGTTTTATTCACCTGCTCATGGTGGAAATTGTTAGCATGCTAAGATTTATTCAAACTTTCATTCCAAAGACCATCATGGTAGCATAAAACAAAGTTTCATCAAATGTTCCACTAATGACAGTAGAAATTTTA
i calJac3.chr9              C 0 C 0
s mm10.chr10                126853647  84 + 130694993 TTGCTCTGATA-C-TTACGGATTTTTATTCAACTGTCTGTGGTG------------------------------------------------------------------AAAGCCTGGTCGAATGCTCTGCTAATTACCATATCATTTCTA
i mm10.chr10                I 1 C 0
s canFam3.chr10              67305374 151 -  69331447 CTGCTCTTTTATCTGTTCGGAATTTTATTCAACTGCCCATGGTGAAAATTGTAAGCATGCCAAG-TTAATTTAAACTTTCATTCCAAAGACAGCCACAAAAGCACAAAATAAAATTTTGCAAAATGTTCCACTAATTACCATAGAACTTCTA
i canFam3.chr10             C 0 C 0
e nomLeu3.chr11              54738687 148 + 123690457 I

a score=436399.000000
s hg38.chr12_GL383550v2_alt     88611 121 +    169178 AACAATATTCCAGAGTT--------------------AC---AGGAAAAA----------------ACACCAAAGGTTAATAGAGACTCTTGGAAATATTAGCT-TTCCCTATGATGCCTCTCCCTGACTTTTGTTGTTCTTCATAAATGAGAGATG-ACTT
s panTro4.chr12              31326046 121 + 134246214 AACAATATTCCAGAGTT--------------------AC---AGGAAAAA----------------ACACCAAAGGTTAATAGAGACTCTTGGAAATATTAGCT-TTCCCTATGATGCCTCTCCCTGACTTTTGTTGTTCTTCATAAATGAGAGATG-ATTT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78521474 121 - 136387465 AACAATATTCCAGAGTT--------------------AC---AGGAAAAA----------------ACACCAAAGGTTAATAGAGACTCTTGGAAATATTAGCT-TTCCCTTTGATGCCTCTCCCTGACTTTTGTTATTCTTCATAAATGAGAGATG-ATTT
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54738835 121 + 123690457 aacaatattccagagtt--------------------ac---aggaaaaa----------------acaccaAAGGTTAATAGAGACTCTTGGAAATATTAGCT-TTCCCTTTGATGCCTCTCCCTGACTTTTGTTATTCTTCATAAATGAGAGATG-ATTT
i nomLeu3.chr11             I 148 C 0
s rheMac3.chr11              79629247 121 - 134985053 AACAATATTCCAGAGTT--------------------AT---AGGAAAAA----------------ACACCAAAGGTTAATAGAGACTCTTGGAAATATTAGTT-TTCCCTTTGATGCCTCTCCCTGACTTTTGTTATTCTTCATAAGTGAGAGATG-ATTT
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80730963 121 - 137757926 AACAATATTCCAGAGTT--------------------AT---AGGAAAAA----------------ACACCAAAGGTTAATAGAGACTCTTGGAAATATTAGTT-TTCCCTTTGATGCCTCTCCCTGACTTTTGTTATTCTTCATAAGTGAGAGATG-ATTT
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78678268 121 - 132286798 aacaatattccAGAGTT--------------------AT---AGGAAAAA----------------ACACCAAAGGTTAATAGAGACTCTTGGAAATATTAGTT-TTCCCTTTGATGCCTCTCCCTGACTTTTGTTATTCTTCATAAGTGAgagatg-attt
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74608266 121 - 128539186 AACAATATTCCAGAGTT--------------------AT---AGGAAAAA----------------ACGCCAAAGGTTAATAGAGACTCTTGGAAATATTAGTT-TTCCCTTTGATGCCTCTCCCTGACTTTTGTTATTCTTCATAAGTGAGAGATG-ATTT
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77411354 138 - 124281992 AACAATATTCCAGAGTT--------------------AT---AGAAAAAAGCTATAATGGGCACAGACACCAAAGGTTAATAGAGACGCTTGGAAACATTAGCT-CTCCCCTTGATGCCTCTTTCTGACTTTTGTTGTTCTTCATAAGTAAGAGATGTTTTT
i calJac3.chr9              C 0 C 0
s mm10.chr10                126853731 146 + 130694993 AGCAATGTTCCAGAGTTGCTTTTAAAAGGCCAAAAAAAT---AGCAAGAG----TGGTAGATATGGTCACTAAAGAGTAAAGCCGAGTCTTGT-AACACTAGCT-CTCTGCAGGCTGCCTCACGGTGACTCT-----GTCTTCA-GAATGAGAGACA-CTTC
i mm10.chr10                C 0 C 0
s canFam3.chr10              67305525 138 -  69331447 AACAATA-TCCAGTGTT--------------------GTTGGGGGAAAAAACATTAATTGGCACAGACATCAAAGGTTAATAGAGATTCTCAGAAACATTAGCTCCCCCCTTTGCTGCCTTTC-CTGACTTTTGTCATTCTTTATGAG-GAGAGACC-ATTT
i canFam3.chr10             C 0 I 237

a score=870478.000000
s hg38.chr12_GL383550v2_alt     88732 229 +    169178 TTAAA-GTGAAATCCCCTTTCCTCTTAAAAGTAGCTTGCTATAATAATTCTATTCCCAACTTAGAAAATTCAAATAACTACTTAAGGGAAAATAAACCACTTCTTTACATTAAATGCAGCTGTTTACAAGAGCTTACCAAATGGAATCGGATGCTGTGCTAAAGAACTGTGAAAATAAAACTCAAACT-----TGAGATC-TGTATACTTTGCTTAAAAATGCCAGAATGAggcca
s panTro4.chr12              31326167 229 + 134246214 TTAAA-GTGAAATCCCCTTTCCTCTTAAAAGTAGCTTGCTATAATAATTCTATTCCCAACTTAGAAAATTCAAATAACTACTTAAGGAAAAATAAACCACTTCTTTACATTAAATGCAGCTGTTTACAAGAGCTTACCAAATGGAATCGGATGCTGTGCTAAAGAACTGTGAAAATAAAACTCAAACT-----TGAGATC-TGTATACTTTGCTTAAAAATGCCAGAATGAggcca
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78521595 229 - 136387465 TTAAA-GTGAAATTCCCTTTCCTCTTAAAAGTATCTTGCTATAATAATTCTATTCCCAACTTAGAAAATTCAAATAACTACTTAAGGGAAAATAAACCACTTCTTTACATTAAATGCAGCTGTTTACAAGAGCTTACCAAGTGGAATCGGATGCCATACTAAAGAACTGTGAAAATAAAACTCAAACT-----TGAGATC-TGTACACTTTGCTTAAAAATGCCAGAATGAggcca
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54738956 229 + 123690457 TTGAG-GTGAAATTCCCTTTCCTCTTAAAAGTATCTTGCTATAATAATTCTACTCCCAACTTAGAAAATTCAAATAACTACTTAAGGGAAAATAAACCACTTCTTTACATTAAATGCAGCTGTTTACAAGAGCTTACCAAATGGAATCAGATGCTGTGCTAAAGAACTGTGAAAATAAAACTCAAACT-----TGAGATC-TGTATACTTTGCTTAAAAATGCCAGAATGAggcca
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79629368 229 - 134985053 TAAAA-GTAAAATTCCCTTTCCTCTTAAAAGCATCTTGCTATAATAATTCTGTTCCCAACTTAGAAAATTCAAATAACTACTTAAGGGAAAATAAACCACTTCTTTACATTAAATGCAGCTGTTTACAAGAGCTTACCAAATGGAATCAGATGCTGTGCTAAAGAACTGTGAAAATAAAACTCAAACT-----TGAGATC-TGTATACTTTGCTTAAAAATGCCAGAATGAggcca
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80731084 229 - 137757926 TAAAA-GTAAAATTCCCTTTCCTCTTAAAAGCATCTTGCTATAATAATTCTGTTCCCAACTTAGAAAATTCAAATAACTACTTAAGGGAAAATAAACCACTTCTTTACATTAAATGCAGCTGTTTACAAGAGCTTACCAAATGGAATCAGATGCTGTGCTAAAGAACTGTGAAAATAAAACTCAAACT-----TGAGATC-TGTATACTTTGCTTAAAAATGCCAGAATGAggcca
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78678389 229 - 132286798 taaaa-gtaaaattcccTTTCCTCTTAAAAGCATCTTGCTATAATAATTCTGTTCCCAActtagaaaattcaaataactaCTTAAGGGAAAATAAACCACTTCTTTACATTAAATGCAGCTGTTTACAAGAGCTTACCAAATGGAATCAGATGCTGTGCTAAAGAACtgtgaaaataaaactcaaact-----TGAGATC-TGTATACTTTGCTTAAAAATGCCAGAatgaggcca
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74608387 229 - 128539186 TAAAA-GTAAAATTCCCTTTCCTCTTAAAAGCATCTTGCTATAATAATTCTATTCCCAACTTAGAAAATTCAAATAACTACTTAAGGGAAAATAAACCACTTCTTTACATTAAATGCAGCTGTTTACAAGAGCTTACCAAATGGAATCAGATGCTGTGCTAAAGAACTGTGAAAATAAAACTCAAACT-----TGAGATC-TGTATACTTTGCTTAAAAATGCCAGAATGAggcca
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77411492 229 - 124281992 TAAAA-GTTAAATTCCCTTTCCTCTTAAAAGTATCTTGCTATAATAATTCTATTCCTAACTTAGAAAATTCAAATAACTGCTTGTGGGAAAATGAACCACTTCTTTACATTAAATGCAGCTGTTTACAAGAGCTTACATAATGGAATCAGATGCTATGCTAAAGAACTGTGAAAATAAAACTCAACTT-----TGAGATC-TGTATGCTTTGCTTAAAAATGAAATAATGAggcca
i calJac3.chr9              C 0 C 0
s mm10.chr10                126853877 224 + 130694993 TTAGATGTGAAGTCCCCTTTCCTCTTAAAACCATCTTGCTGTACCAATTCTATCCTCAACTTAGAACGTTGAAATAGCAAGTTACAGGGAAATAAACTTGCCCCTCACACGGAAGGCAGCGATT------GCCTCACCGAGTGGGAT-GGGTGAAACGTTGAAGGAC--TGAGAACAAAGCCCTGCGTGTGAGCAAGATCGTAACCGCTTCGGTTAGCA---CCAGAAGGAACCCA
i mm10.chr10                C 0 I 85
s canFam3.chr10              67305900 212 -  69331447 TTTAA-GTATAATTTTCTTTCCTCTTAAAAGTGTCTTGCTATAATAATTCTATTCTC-------AAAGTTCAAATAACTACTTATAGGAATATGAGGCATAAGCTTAGATAGAATGCAGCTGTTGATGACAGTTCACCAAACAGAATGAG----------AAAGGATCATTAAAATAAAGGTCCAACA-----TGAGATC-CTTACACTTCGGTTAGAAACACCAGAATGATCTCA
i canFam3.chr10             I 237 C 0

a score=8595.000000
s hg38.chr12_GL383550v2_alt     88961 2 +    169178 ga
s panTro4.chr12              31326396 2 + 134246214 ga
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78521824 2 - 136387465 ga
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54739185 2 + 123690457 ga
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79629597 2 - 134985053 ga
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80731313 2 - 137757926 ga
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78678618 2 - 132286798 ga
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74608616 2 - 128539186 ga
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77411721 2 - 124281992 ga
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67306112 2 -  69331447 GA
i canFam3.chr10             C 0 C 0
e mm10.chr10                126854101 85 + 130694993 I

a score=336206.000000
s hg38.chr12_GL383550v2_alt     88963 110 +    169178 catggtggcttatgcctgtaatcccaatatttggggaggccaaggcaggaggatcgcttaaacctaggagttcaggacccacctgggcaacatggcaagaccctctcGCC
s panTro4.chr12              31326398 110 + 134246214 catggtggcttatgcctgtaatcccaatatttggggaggccaaggcaggaggatcgcttaaacctaggagttcaggacccacctgggcaacatggcaagaccctctcGCC
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78521826 110 - 136387465 catgatggctcatgcctgtaatcctaatatttggggaggccaaggcaggaggattgcttaaacctaggagttcaggacccacctgggcaacatggcaagatcctttctcC
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54739187 110 + 123690457 catggtggcttatgcctgtaatcccaatatttggggaggccaaggcaggaggatcgcttaaacctaggagttcaggacccacatgggcaacatggcaagatcttctctcc
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79629599 110 - 134985053 catggtggctcctgcctgtaatcccaatatttggggaggccaaggcaggaggatcgcttaaacctaggagttcgggacccacctgggcaacatggcaagatcctctctcC
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80731315 110 - 137757926 catggtggctcctgcctgtaatcccaatatttggggaggccaaggcaggaggatcgcttaaacctaggagttcgggacccacctgggcaacatggcaagatcctctctcC
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78678620 110 - 132286798 catggtggctcctgcctgtaatcccaatatttggggaggccaaggcaggaggatcgcttaaacctaggagtttgggacccacctgggcaacatggcaagatcctctCTCC
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74608618 110 - 128539186 catggtggctcctgcctgtaatcccaatatttgcggaggccaaggcaggaggatcgtttaaacctaggagttcgggacccacctgggcaacatggcaagatcctctctcC
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77411723 108 - 124281992 catggtggttcatgcctgtaatcccaatactt--ggagatcaaggcagcaggatcgctcaaacctaggagctcaggacctgcctggacaacatggcaagatcctgtctca
i calJac3.chr9              C 0 C 0
e mm10.chr10                126854101  85 + 130694993 I
e canFam3.chr10              67306114   0 -  69331447 C

a score=101039.000000
s hg38.chr12_GL383550v2_alt     89073 56 +    169178 ATTCAACATCCt----------tttttttttttt------tt--tgagatag-----aatcttgatctgtcacctaggc
s panTro4.chr12              31326508 53 + 134246214 ATTCAACATCCt----------tttttttttttt-----------gagatag-----aatcttgatctgtcacctaggc
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78521936 58 - 136387465 ATTCAACATCCt----------tttttttttttt----tttt--tgagatgg-----aaccttgatctgtcacctaggc
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54739297 62 + 123690457 aTTCAACATCCt----------tttttttttttttttttttt--tgagatgg-----aaccttgatctgtcacctaggc
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79629709 49 - 134985053 ATTCAACATACA-------------ttttttttt------------agatgg-----agtcttgatccgtcatctagac
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80731425 50 - 137757926 ATTCAACATACA------------tttttttttt------------agatgg-----agtcttgatccgtcacctagac
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78678730 49 - 132286798 attcaacataca-------------ttttttttt------------agatgg-----agtcttgatccgtcacctagac
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74608728 49 - 128539186 ATTCAACATACA-------------ttttttttt------------agatgg-----agtcttgatccgtcacctagac
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77411831 74 - 124281992 tatatatatatatatatatatattttttttttttttttttttaattagatgc-----cgtcttgctctgtcacccaggc
i calJac3.chr9              C 0 C 0
s mm10.chr10                126854186 59 + 130694993 ACTGAATATCTT----------TTTTTTTTTTTT----------TAACATTGTTAATGGGCTTCATCTTTAGACCAGAC
i mm10.chr10                I 85 I 94
e canFam3.chr10              67306114  0 -  69331447 C

a score=447567.000000
s hg38.chr12_GL383550v2_alt     89129 150 +    169178 tggagtgcagtggtgcaatcttggctcactgcaacctctgcctcccgggttcaagcgagtctcctgcctcagcctccaaagtagctaggattacaggcacccaccaccaagcctggctaatttttgtatttttagcagagacagagtttc
s panTro4.chr12              31326561 150 + 134246214 tggagtgcagtgttgcaatcttggctcactgcaacctctgcctcccgggttcaagcgagtctcctgcctcagcctccaaagtagctaggattacaggcacccaccaccaagcctggctaatttttgtatttttagcagagacagagtttc
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78521994 149 - 136387465 tggagtgcagtggtgcaatcttggctca-tgcaacctctgcctccctggttcaagcgagtctcctgccccagcctccaaagtagctaggattacaggcacccaccaccatgcctggctaatttttgtatttttagtagagacagagtttc
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54739359 150 + 123690457 tggagtgcagtggtgcaatcttggctcactgcaacctctgcctcccgagttcaagcgagtctcctgcctcagcctccaaagtagctaggattacaggcacccaccaccatgcctggctaatttttgtatttttagtagagatggagtttc
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79629758 149 - 134985053 tggagtgcagtggtgcaatcttggctcgctgcaacctctgcctccagggttcaagcgattctcctgcctcagcctccaaagtagctgggattacaggtgcccaccaccatgcct-gctaatttttgtacttttagtagagacggagtttc
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80731475 149 - 137757926 tggagtgcagtggtgcaatcttggctcactgcaacctctgcctccagggttcaagcgattctcctgcctcagcctccaaagtagctgggattacaggtgcccaccaccatgcct-gctaatttttgtacttttagtagagacggagtttc
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78678779 149 - 132286798 tggagtgcagtggtgcaatcttggctcgctgcaacctctgcctccagggttcaagcgattctcctgcctcagcctccaaagtagctgggattacaggtgcccaccaccatgcct-gctaatttttgtatttttagtagagacggagtttc
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74608777 149 - 128539186 tggagtgcagtggtgcaatcttggctcgctgcaacctctgcctccagggttcaagcgattctcctgcctcagcctccaaagtagctaggattacaggtgcccaccaccatgcct-gctaatttttgtatttttagtagagacggagtttc
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77411905 150 - 124281992 tggaatgcagtggtacaatcttggcttactgcaacctccacctcctggattcaagagattcttctgcttcagcctcctaagtagctgggattacgggtacctaccaccacacctggctgatgtttgtatttttaatagagacagagtttc
i calJac3.chr9              C 0 C 0
e mm10.chr10                126854245  94 + 130694993 I
e canFam3.chr10              67306114   0 -  69331447 C

a score=429995.000000
s hg38.chr12_GL383550v2_alt     89279 146 +    169178 accatgt--tggccaggctggtctcaaactcctgacctcaggtgatctgcccgcctcagcctcccaaagtattgggattacaggtgtgagccaccacgcctggccCATAAAATATTAAATTTTTAAAAACCACCAGAATTAACTCACT
s panTro4.chr12              31326711 146 + 134246214 accctgt--tggccaggctggtctcaaactcctgacctccggtgatctgcccgcctcagcctcccaaagtattgggattacaggtgtgagccaccacgcctggccCataaaatattaaattttttaaaaCCACCAGAATTAACTCACT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78522143 146 - 136387465 accatgt--tggccaggctagtatcaaactcttgacctcaggtgatctgcccgcctcagcctcccaaagtgttgggattacaggcgtgagccaccacgcccagccCataaaatattaattttttaaaaaCCACCAGAATTAACTCACT
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54739509 146 + 123690457 accatgt--tggccaggatggtctcaaactcctgacctcaggtgatctgcccacctcagcctcccaaagtgttgggattacaggtgtgagccaccacacccggccCATAAAATATTAATTTTTAAAAAACCACCAGAATTAACTCACT
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79629907 146 - 134985053 accatgt--tggccaggctggtctcaaaccagtgacctcaggtgatctgcccacctcagcctcccaaagtgttgagattacaggcatgagccaccacacctggccCATAAAATATTAATTTTTTTGAAACCACCAGAATTAACTCACT
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80731624 146 - 137757926 accatgt--tggccaggctggtctcaaaccagtgacctcaggtgatctgcccacctcagcctcccaaagtgttgagattacaggcatgagccaccacacctggccCATAAAATATTAATTTTTTTAAAACCACCAGAATTAACTCACT
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78678928 146 - 132286798 accatgt--tggccaggctggtctcaaaccactgacctcaggtgatctgcccacctcagcctcccaaagtgttgagattacaggcatgagccaccacacctggcccataaaatattaatttttttaaaaccaccagaatTAACTCACT
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74608926 146 - 128539186 accatgt--tggccaggctggtctcaaactactgacctcaggtgatctgcccacttcagcctcccaaagtgttgggattacaggcatgagccaccacacctggtcCATAAAATATTAATTTTTTTAAAACCACCAGAATTAACTCACT
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77412055 145 - 124281992 accatgt--tggccaggctagtctcaaactcctgacctcaggtgatctgcccacctcagcctcccaaagctctgggattacaggtgtgagccaccacacccagccCATAAAATACTAATTTTTT-AAAACCACCAGAATTGACTCACT
i calJac3.chr9              C 0 C 0
s mm10.chr10                126854339  81 + 130694993 accacgtagtggc--------tcacaaccatctg---taatgggatctgccgccctc---------------------ttctggtgtg---------------------------------tctgaagacagctacagtgtactta--
i mm10.chr10                I 94 C 0
e canFam3.chr10              67306114   0 -  69331447 C

a score=2975185.000000
s hg38.chr12_GL383550v2_alt     89425 769 +    169178  
s panTro4.chr12              31326857 771 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78522289 769 - 136387465  
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54739655 769 + 123690457  
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79630053 765 - 134985053  
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80731770 766 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78679074 765 - 132286798  
i papAnu2.chr11             C 0 I 7498
s chlSab2.chr11              74609072 746 - 128539186  
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77412200 771 - 124281992  
i calJac3.chr9              C 0 C 0
s mm10.chr10                126854420 609 + 130694993  
i mm10.chr10                C 0 I 3
s canFam3.chr10              67306114 772 -  69331447  
i canFam3.chr10             C 0 C 0

a score=1605472.000000
s hg38.chr12_GL383550v2_alt     90194 527 +    169178  
s panTro4.chr12              31327628 525 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78523058 537 - 136387465  
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54740424 526 + 123690457  
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79630818 521 - 134985053  
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80732536 521 - 137757926  
i macFas5.chr11             C 0 C 0
s chlSab2.chr11              74609818 529 - 128539186  
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77412971 499 - 124281992  
i calJac3.chr9              C 0 I 152
s mm10.chr10                126855032 521 + 130694993  
i mm10.chr10                I 3 C 0
s canFam3.chr10              67306886 535 -  69331447  
i canFam3.chr10             C 0 C 0
e papAnu2.chr11              78679839 7498 - 132286798 I

a score=332905.000000
s hg38.chr12_GL383550v2_alt     90721 109 +    169178 CATTTAGCCCTCTTTCAATTAATTGCATGTAAAgtggtaaag-tttcaccccacattggtttctcttgccatctctcagaaccaacctcatctctccttaaagtgtattc
s panTro4.chr12              31328153 109 + 134246214 CATTTAGCCCTCTTTCAATTAATTGCATGTAAAgtggtaaag-tttcaccccacattggtttctcttgccatctctcagaaccaacctcatctctccttaaagtgtattc
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78523595 109 - 136387465 CATTTAGCCCTCTTTCAATTAATTGCATGTAAAGTGGTAAAG-TTTCACCCCACATTGGTTTCTCTTGCCATCTCTCAGAACCAACCTCACCTCTCCTTAAAGTGTATTC
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54740950 108 + 123690457 CATTTAGCCCTCTTTCAATTAATTGCATGTAAAGT-GTAAAG-TTTCACCCCACATTGGTTTCTCTTGCCATCTCTCAGAACCAACCTCATCTCTCCTTAAAGTGTATTG
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79631339 109 - 134985053 CATTTAGCCCTCTTTCAATTAATTGCATGTAAAGTGGTAAAG-TTTCACCCCACATTGGTTTCTCTTGCCGTCTCTCAGAACCAACCTCATTTCTCCTTAAAGTGTATTC
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80733057 109 - 137757926 CATTTAGCCCTCTTTCAATTAATTGCATGTAAAGTGGTAAAG-TTTCACCCCACATTGGTTTCTCTTGCCGTCTCTCAGAACCAACCTCATTTCTCCTTAAAGTGTATTC
i macFas5.chr11             C 0 C 0
s chlSab2.chr11              74610347 109 - 128539186 CATTTAGCCCTGTTTCAATTAATTGCATGTAAAGTGGTAAAG-TTTCACCCCACATTGGTTTCTCTGGCCGTCTCTCAGAACCAACCTCATCTCTCCTTAAAGTGTATTC
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77413622 109 - 124281992 CATTTAGCCCTCTTTCAATCAATTGCATGTAAAGTGGTAGAG-TTTCACCCCACATTGGTTTCCCTTGCCATCTCTCAGAATCAACATCATATCTCCTTAAAGTGTATTC
i calJac3.chr9              I 152 C 0
s mm10.chr10                126855553 103 + 130694993 CATGCAGCTAACTC----TGAACTTCATGTCAAGTGGCAAAG-TTCCCACCCACACTAA-TCCACCTGCCTTAACTCAGAACT-CTCTCCTCTCGCCTCAAAATATGTTT
i mm10.chr10                C 0 I 1
s canFam3.chr10              67307421 110 -  69331447 CATGTAGCCATCTCTCAATTAACTGCATGCAAAATGACCAAGTttttatctttcactgatttcccctgccattatttagagccaccttcctctttcctccaattatattc
i canFam3.chr10             C 0 C 0
e papAnu2.chr11              78679839 7498 - 132286798 I

a score=5939.000000
s hg38.chr12_GL383550v2_alt     90830 3 +    169178 agg
s panTro4.chr12              31328262 3 + 134246214 agg
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78523704 3 - 136387465 GGG
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54741058 3 + 123690457 AAG
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79631448 3 - 134985053 AGG
i rheMac3.chr11             C 0 I 6595
s macFas5.chr11              80733166 3 - 137757926 AGG
i macFas5.chr11             C 0 I 6961
s papAnu2.chr11              78687337 3 - 132286798 aaa
i papAnu2.chr11             I 7498 C 0
s chlSab2.chr11              74610456 3 - 128539186 AGG
i chlSab2.chr11             C 0 I 2973
s calJac3.chr9               77413731 3 - 124281992 AGG
i calJac3.chr9              C 0 C 0
s mm10.chr10                126855657 2 + 130694993 AG-
i mm10.chr10                I 1 C 0
s canFam3.chr10              67307531 3 -  69331447 agg
i canFam3.chr10             C 0 C 0

a score=1018186.000000
s hg38.chr12_GL383550v2_alt     90833 300 +    169178 agaaatcagtatattttaactttagcctaaaccaaacagaattttatggtgaagt--ctgaaataaattatttattatatgtcataatcaaataATTTAAGAATCAACAATTCACTTTCAAAATCAC-AGAAAATAAGAA----------ATATATATATT-----CTGTGGTATATTAATAGGTAACATTTAAAATGCA-----CAAAAAACATTGGGAA--GTAT--TGTTCTGTTACATATTATGAACACATAATTAGTTAAGCACAACAAA--------------------------------------------AA----ACTCTAATTTCTT--GGTGG-----------------------GATACTATCTGATTGCCAGAGATTAGCAGAAA
s panTro4.chr12              31328265 300 + 134246214 agaaatcagtatattttaacgttagcctaaaccaaacagaattttatggtgaagt--ctgaaatcaattatttattatatgtcataatcaaataATTTAAGAATCAACAATTCACTTTCAAAATCAC-AGAAAATAAGAA----------ATATATATATT-----CTGTGGTATATTAATAGGTAAAATTTAAAATACA-----CAAAAAACATTGGGAA--GTAT--TGTTCTGTTACATATTATGAACATATAATTAGTTAAACACAACAAA--------------------------------------------AA----ACACTAATTTCTT--GGTGG-----------------------GATACTATCTGATTGCCAGAGATTAGCAGAAA
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78523707 307 - 136387465 AGAAATCAATAAATTTTAACGTTAGCGTAAACCAAACAGAATTTTATGGTGAAGT--CTGaaataaattatttattatatgtcataatcaaataatttaataatCAACAATTCACTTTCAAAATCAC-AGAAAATAAGACTATATAT---ATATATATATT-----CTGTGGTATATTAATAGGTAAAATTTAAAATACA-----CAAAAAACATTGGGAA--GTAT--TGTTCTGTTACATATTATGAACACATAATTAGTTAAACACAACAAA--------------------------------------------AA----ACACTAATTTCTT--GGTGG-----------------------GATACTATCTGATTGCCAGAGATTAGCAGAAA
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54741061 304 + 123690457 AGAAATCAGTATATTTTAACGTTAGCCTAAACCAAACAGAATTTTATGGTGAAGT--CTGAAATAAATTATTTATTACATGTCGTAATCAAATAATTTAAGAATCAACAATTCACTTTCAAAATCAC-AGAAAGTAAGAC---ACAT---ATATATATATT-----CTGTGGTATATTAATAGGTAAAATTTAAAATACA-----CAAAAAACATTGGGAA--GTAT--TGTTCTGTTACATATTATGAACACATAATTAGTTAAACACAACACA--------------------------------------------AA----ACACTAATTTCTT--GGTGG-----------------------GATACTATCTGATTGCCAGAGATTAGCAGAAA
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79638046 303 - 134985053 AGAAATCAGTATATTTTAACACTAGCCTAAACCAAACAGAATTTTAGGGTGAAGT--CTGAAATAAATTATTTATT--ATGTCATAATCAAATAATTTAAGAATCAACAATTCACTTTCAAAATTAC-AGAAAATAAGAT----------GAACATATATTTTTTCCCGTGGTATATTAATAGGTAAAATTTTAAATACA-----CAAAAAACATTGGGAA--GTAT--TGTTGTATTACATATTATGAACACATAATTTGTTAAACACAACAAA--------------------------------------------AA----ACACTAATTTCTT--GGTGG-----------------------GATACTATCTGATTGCCAGAGATGAGCAGAAA
i rheMac3.chr11             I 6595 C 0
s macFas5.chr11              80740130 303 - 137757926 AGAAATCAGTATATTTTAACACTAGCCTAAACCAAACAGAATTTTAGGGTGAAGT--CTGAAATAAATTATTTATT--ATGTCATAATCAAATAATTTAAGAATCAACAATTCACTTTCAAAATCAC-AGAAAATAAGAT----------GAATATATATTTTTTCCCGTGGTATATTAATAGGTAAAATTTTAAATACA-----CAAAAAACATTGGGAA--GTAT--TGTTGTATTACATATTATGAACACATAATTTGTTAAACACAACAAA--------------------------------------------AA----ACACTAATTTCTT--GGTGG-----------------------GATACTATCTGATTGCCAGAGATGAGCAGAAA
i macFas5.chr11             I 6961 C 0
s papAnu2.chr11              78687340 303 - 132286798 agaaatcagtatattttaACACTAGCCTAAACCAAACAGAATTTTAGGGTGAAgt--ctgaaataaattatttatt--atgtcataatcaaataatttaagaatCAACAATTCACTTtcaaaatcac-agaaaataagat----------gaatatatattttttcccatggTATATTAataggtaaaattttaaataca-----caaaaaacattGGTAA--GTAT--TGTTGTATTACATATTATGAACACATAATTTGttaaacacaacaaa--------------------------------------------aa----acactaaTTTCTT--GGTGG-----------------------GATACTATCTGATTGCCAGAGATGAGCAGAAA
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74613432 303 - 128539186 AGAAATCAGTATATTTTAACACTAGCCTAAACCAAACAGAATTTTAGGGTGAAGT--CTGAAATAAATTATTTATT--ATGTCATAATCAAATAATTTAAGAATCAACAATTCACTTTCAAAATCAC-AGAAAATAAGAT----------GAATATATATTTTTTCCCGTGGTATATTAATAGGTAAAATTTTAAATACA-----CAAAAAACATTGGGAA--GTAT--TGTTGTATTACATATTATGAACACATAATCTGTTAAACACAACAAA--------------------------------------------AA----ACACCAATTTCTT--GGTGG-----------------------GATACTATCTGATTGCCAGAGATGAGCAGAAA
i chlSab2.chr11             I 2973 C 0
s calJac3.chr9               77413734 305 - 124281992 AGAAATCAGTATATTTTAGTATTAGCCTAAATCAAATAGAATTTCATGGAGAAGT--CTAAAATAAAGTATTTATTATATGTCATAATCAAATAATTTAAGAATCAACAATGTGCTTTCAAAATTAC-AGAAAATGGGAC----------AAATATATTTT-TTTCCTGTGGTATATTAATAGGTAAAATTTTAAATACA-----CAAAAAACATTGGAAA--GAAT--TGTTCTACTACATATTATGAATACATAATTAGTCAAACACAATAAAG-------------------------------------------AA----ACACTAATATCTT--GGTGG-----------------------GACACTATCTGATTGCCAGAGATTAGCAGAAA
i calJac3.chr9              C 0 C 0
s mm10.chr10                126855659 320 + 130694993 AGCAATCAGAGGTATTCAACATTAACCCAAAACAAA-GCAATTTTATG--AAGGT--CTAAAGTAAATTATTTGTT-TATATC---ATCAAGTGATTTAAAA---AGCAATGTGCTT-------------AAAACTGGAA----------ACGT---TTTT-----TTGTGGTTTGT------GCACTATTTAAAATATACCCCTCCAAAAGCATGAGAAA--GTGTAGTGTTCTATTACATATTATGACCCCATCAACAGTCAATGACCAgaaggaaggaagggagggaggaagggagggagcgatggaaggaaggGTAG----ACTCTAACCTTTG--GATAG-----------------------GATATTATCCAATTGCTACAGATTATTAGAAA
i mm10.chr10                C 0 C 0
s canFam3.chr10              67307534 333 -  69331447 agaaatcagtat-ttttaacattagcccaaacaaaacataattgagTGGAAGAGTAGTTTAAAGTAATTATTTGTTATATAGCACAATCAAATAAATTAAGCCTCCATAATGTGCTT--AAAATCACAAAAAAATAAGAT---AAATATCATATATACCTT-----CTGTGGTATAT------ACGATATTTAAAATATA---CTCAGGAAACATTGGAAACTCTAT--AATTCTGTTACAGATTATGAAC-TGTCATTAGTCAAGCAAAATAAA--------------------------------------------AGAATCACACTAACCTCTTAAGGTGATATTATCTGAAAAAAAAAAAGGTGATATTATCTGATTGCCAGAGATTAGCAGAAA
i canFam3.chr10             C 0 I 433

a score=1701056.000000
s hg38.chr12_GL383550v2_alt     91133 482 +    169178  
s panTro4.chr12              31328565 482 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78524014 482 - 136387465  
i ponAbe2.chr12             C 0 I 676
s nomLeu3.chr11              54741365 481 + 123690457  
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79638349 479 - 134985053  
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80740433 460 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78687643 479 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74613735 479 - 128539186  
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77414039 477 - 124281992  
i calJac3.chr9              C 0 C 0
s mm10.chr10                126855979 429 + 130694993  
i mm10.chr10                C 0 C 0
s canFam3.chr10              67308300 514 -  69331447  
i canFam3.chr10             I 433 C 0

a score=427919.000000
s hg38.chr12_GL383550v2_alt     91615 128 +    169178 CAT---TAAATGT--CCTTA-ATATATTCATATATA-GTAAATGAACTAAAAATGA----TGGGTCTCCCAAG-TGCTATAAATGACGCCAA-AATGTAAT-ATGGAGACCCAGCTCAATAAAACAC-CCAGGCCACTCAGGG
s panTro4.chr12              31329047 128 + 134246214 CAT---TAAATGT--CCTTA-ATATATTCATATATA-GTAAATGAACTAAAAATGA----TGGGTCTCCCAAG-TGCTATAAATGACCCCAA-AATGTAAT-ATGGAGACCCAGCTCAATAAAACAC-CCAGGCCACTCAGGG
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78525172 128 - 136387465 CAT---TAAATGT--CCTTA-ATATATTCATATATA-GTAAATGAACTAAAAATGA----TGGGTCTCCCAAG-TGCTATAAATGACCCCAA-AATGTAAT-ATGGAGACTCAGCTCAATCAAACAC-CCAGGCCACTCAGGG
i ponAbe2.chr12             I 676 C 0
s nomLeu3.chr11              54741846 128 + 123690457 CAT---TAAATGT--CCTTA-ATATATTCGTATATA-GTAAATGAACTAAAAATGA----TGGGTCTCCCAAG-TGTTATAAATGACCCCAA-AATGTAAT-GTGGAGACCCAGCTCAATAAAACAC-CCGGGCCATTCAGGG
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79638828 129 - 134985053 CAT---TAAATGT--CCTTG-ATATATTCATATATA-GTAAATGAACTAAAAATTA----TGGGTCTCCCAAG-TGCTATAAATGACCCCAA-AATGTAATAATGGAGACTCAGCTCAACAAAACAC-CCAGGCCACTCAGGG
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80740893 129 - 137757926 CAT---TAAATGT--CCTTG-ATATATTCATATATA-GTAAATGAACTAAAAATTA----TGGGTCTCCCAAG-TGCTATAAATGACCCCAA-AATGTAATAATGGAGACTCAGCTCAACAAAACAC-CCAGGCCACTCAGGG
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78688122 129 - 132286798 CAT---TAAATGT--Ccttg-atatattcatatata-gtAAATGAACTAAAAATTA----TGGGTCTCCCAAG-TGCTATAAATGACCCCAA-AATGTAATAATGGAGACTCAGCTCAACAAAACAC-CCAGGCCACTCAGGG
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74614214 129 - 128539186 CAT---TAAATGT--CCTTG-ATATATCCATATATA-GTAAATGAACTAAAAATTA----TGGGTCTCCCAAG-TGCTATAAATGACCCCAA-AATGTAATAATGGAGACTCAGCTCAACAAAACAC-CCAGACCACTCAGGC
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77414516 128 - 124281992 CAT---TAAATGT--CCTTG-TTATATTCATATATA-GTAAATGAACTAAAAATTA----TGAGTCCCCCAAG-TGCTATAAATGACCCCAA-AATGTAAT-ATGGAGACCCAGCTCAACCAAACAC-CCTGGCCACTCAGGG
i calJac3.chr9              C 0 C 0
s mm10.chr10                126856408 133 + 130694993 catatatatatat--atatatatatatatatatatatatGAATGATTCATGGACTAAGTTTATGTCCTTCAGGAGGTTTTTCATGCCTTTAC-AATGTAGT-ACAGAAACTCACCTC-----AACAG-CCAGGCCACTTTGAG
i mm10.chr10                C 0 I 2499
s canFam3.chr10              67308814 113 -  69331447 ----TGTAAGCGCAGCCTTA-GTATATTCATATATA-G-----GGATTAACAATTT----TTGGTCCCCCGAG-TGCTGCTCATGGCTACAGTGTTGTAGT-ATGGAGA-------------GACACACTGAGCCACACTGGG
i canFam3.chr10             C 0 C 0

a score=4646219.000000
s hg38.chr12_GL383550v2_alt     91743 1349 +    169178  
s panTro4.chr12              31329175 1352 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78525300 1364 - 136387465  
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54741974 1343 + 123690457  
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79638957 1361 - 134985053  
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80741022 1361 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78688251 1357 - 132286798  
i papAnu2.chr11             C 0 I 3113
s chlSab2.chr11              74614343 1362 - 128539186  
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77414644 1369 - 124281992  
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67308927 1285 -  69331447  
i canFam3.chr10             C 0 C 0
e mm10.chr10                126856541 2499 + 130694993 I

a score=868543.000000
s hg38.chr12_GL383550v2_alt     93092 229 +    169178 CTATTTTCTATTTACATGAAAGGGTATATTTCCATGTCTTTAGCGGTTAGACAGGCATAAATGAATAAATTAGCATTTGCCTACATTTAAATGTTATAACCTAAACTGCTGGGCAGCTGACTCTAATTGATTTATTATTGCTCACAGTTATTGTCTGCCAACTAAAGCCAAATGTTAAGGTAAAAGACAAGCTACTAACCAAAAAAGTGATACCTCAGTGTCCTGGGTT
s panTro4.chr12              31330527 229 + 134246214 CTATTTTCTATTTACATGAAAGGGTATTTTTCCATGTCTTTAGCGGTTAGACAGGCATAAATGAATAAATTAGCATTTGCCTACATTTAAATGTTACAACCTAAACTGTTGGGCAGCTGACTCTAATTGATTTATTATTGCTCACAGTTATTGTCTGCCAACTAAAGCCAAATGTTAAGGTAAAAGACAAGCTACTAACCAAAAAAGTGATACCTCAGTGTCCTGGGTT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78526664 229 - 136387465 CTATTTTCTATTTACAAGAAAGGGTATATTTCCATGTCTTTAGCAGTTAGACAGGCATAAATGAATAAATTAGCATTTGCCTACATTTAAATGTTATAACCTAAACTGCTGGGCAGCTGACTCTAATTGATTTATTATTGCTCACAGTTATCATCTGCCAACTAAAGCCAAGTGTTAAGGCAAAAGACAAGCTACTAACCAAAAAAGTGATACCTCAGTGTCCTGGTTT
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54743317 229 + 123690457 CTATTTTCTATTTACAAGAAAGTGTGTATTTCCATGTCTTTAGCGGTTAGACAGGCACAAATGAATAAATTAGCATTTGCCTACATTTAAATGTTATAACCTAAACTGCTGGGCAGCTGACTCTAATTGATTTATTATTGCTCACAGTTACTGTTTGCCAACTAAAGCCAAATGTTAAGGTAAAAGACAAGCCACTAACCAAAAAAGTGATACCTCAGTGTCCTGGTTT
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79640318 229 - 134985053 CTATTTTCTATTTACAAGAAAGGGTATATTTTCATGTCTTTAGCGGTTAGACAGGCATAAATGAATAAATTAGCATTTGCCTACATTTAAATGTTATAACCTAAACTGCTGGGCAGCTGACTCTAATTGATTTATTATTGCTCACAGTTATTGTTTGCCAACTAAAGCCAAATGTTAAGGTAAAAGAGAAGCTACTAACCAAAAACATGATACCTCAGTGTCCTGGTTT
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80742383 229 - 137757926 CTATTTTCTATTTACAAGAAAGGGTATATTTTCATGTCTTTAGCGGTTAGACAGGCATAAATGAATAAATTAGCATTTGCCTACATTTAAATGTTATAACCTAAACTGCTGGGCAGCTGACTCTAATTGATTTATTATTGCTCACAGTTATTGTTTGCCAACTAAAGCCAAATGTTAAGGTAAAAGAGAAGCTACTAACCAAAAACATGATACCTCAGTGTCCTGGTTT
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78692721 229 - 132286798 ctattttctatttacaAGAAAGGGTATATTTTCATGTCTTTAGCGGTTAGACaggcataaatgaataaattagcaTTTGCCTACATTTAAATGTTATAACCTAAACTGCTGGGCAGCTGACTCTAATTGATTTATTATTGCTCACAGTTATTGTTTGCCAACTAAAGCCAAATGTTAAGGTAAAAGAGAAGCTACTAACCAAAAACATGATACCTCAGTGTCCTGGTTT
i papAnu2.chr11             I 3113 C 0
s chlSab2.chr11              74615705 229 - 128539186 CTATTTTCTATTTACAAGAAAGGGTATATTTTCATGTCTTTAGCAGTTAGACAGGCATAAATGAATAAATTAGCATTTGCCTACATTTAAATGTTATAACCTAAACTGCTGGGCAGCTGACTCTAATTGATTTATTATTGCTCACAGTTATTGTTTGCCAACTAAAGCCAAATGTTAAGGTAAAAGAGAAGCTACTAACCAAAAACATGATACCTCAGTGTCCTGGTTT
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77416013 229 - 124281992 CTATTTTCTATTTACAAGAAAGGGTATATTTCCATGTCTTCAGTGGCCAGACAGGCATAAATGAATAAATTAGCATTTGCCTACATTTAAATGTTATAACCTAAACTGCTGGACAGCTGACTCTAATTGATTTATTATTGCTCACAGTTATTGTTTGCCAACTAAAGCCAAATGTTAAGATAAAGGACAAGCTACTAACCAAAAAAATGATACTTCAGTGTCCTGGTTT
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67310212 226 -  69331447 CTATTTTTTATTTACAAGAAAGGGTGTATTTCCATGTCTT-AGCACTTAGACAGGCATAAATGAATAAATTAGCATTTCCCTACATTTAAATCTTATAATCTAAACTATTGGACAGCTGACTCCAATTGATTTATTATTGTGCAGAGTT-CTGTCTGCCAAATGAAGCCAAATGTTAAGGTGAAGGACAAGTTACTAACCAAAAA-ATGGTATGTCGGCACCCTGgttt
i canFam3.chr10             C 0 I 542
e mm10.chr10                126856541 2499 + 130694993 I

a score=119724.000000
s hg38.chr12_GL383550v2_alt     93321 41 +    169178 TTAGGCTCAGAACTCTTCCTGTGAGCC---ATTAGGGATCAGGT
s panTro4.chr12              31330756 41 + 134246214 TTAGGCTCAGAACTCTTCCTGTGAGCC---ATTAGGAATCAGGT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78526893 41 - 136387465 TTAGGCTCAGAACTCTTCCTGCGAGCC---ATTAGGGATCAGGT
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54743546 44 + 123690457 TTAGGCTCAGAACTCTTCCTGTGAGCCATGATTAGGGATCAGGT
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79640547 44 - 134985053 TTAGGCTCAGAACTCTTCCTGTGATCCATGATTAGGGATCAGGT
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80742612 44 - 137757926 TTAGGCTCAGAACTCTTCCTGTGATCCATGATTAGGGATCAGGT
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78692950 43 - 132286798 TTAGGCTCAGAACTCTTCCTGTGATCCATGATTA-GGATCAGGT
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74615934 44 - 128539186 TTAGGCTCAGAACTCTTCCTGTGATCCATGATTAGGGATCAGGT
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77416242 44 - 124281992 TTACACTCAGAACTCTTCCTGTGATCCATGATTAGGGATTGGGC
i calJac3.chr9              C 0 C 0
e mm10.chr10                126856541 2499 + 130694993 I
e canFam3.chr10              67310438 542 -  69331447 I

a score=3697844.000000
s hg38.chr12_GL383550v2_alt     93362 1075 +    169178  
s panTro4.chr12              31330797 1074 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78526934 1072 - 136387465  
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54743590 1073 + 123690457  
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79640591 1076 - 134985053  
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80742656 1076 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78692993 1075 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74615978 1076 - 128539186  
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77416286 1058 - 124281992  
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67310980 1095 -  69331447  
i canFam3.chr10             I 542 I 159
e mm10.chr10                126856541 2499 + 130694993 I

a score=554960.000000
s hg38.chr12_GL383550v2_alt     94437 155 +    169178 CTCCCTTTCCACACTTAACTACATCAAG------------------CCAGCTTCTTCAGTATTTGTGTGAATGCATAGTCCCCAGACAGGGACTTGGGCTATTCCAAAAGATCCATCTCCTACTTAAATTGACGTATTCCTATGCCCCCACCA-GAAAATCTCTGACAGTTTTG
s panTro4.chr12              31331871 155 + 134246214 CTCCCTTTCCACACTTAACTACATCAAG------------------CCAGCTTCTTCAGTATTTGTGTGAATGCATAGTCCCCAGACAGGGACTTGGGCTATTCCAAAAGATCCATCTCCTACTTAAATTGACGTATTCCTATGCCCCCACCA-GAAAATCTCTGACAGTTTTG
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78528006 155 - 136387465 CTCCCTTTCCACACTTAACTACATCAAG------------------CCAGCTTCTTCAGTATTTGTGTGAATGCATAGTCCCCAGACAGGGACTTGGGCTATTCCAAAAGATCCATCTCCTACTTAAATTGACGTATCCCTATGCCCCCACCA-GAAAATCTCTGACAGTTTTG
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54744663 155 + 123690457 CTCCCTTTCCACACTTAACTACATCAAG------------------CCAGCTTCTTCAGTATTTGTGTGAATGCATAGTCCCCAGACAGGGACTTGGGCTATTCCAAAAGATCCATCTCCTACTTAAATTGACGTATCCCTATGCCCCCACCA-GAAAATCTCTGACAGTTTTG
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79641667 155 - 134985053 CTCCCTTTCCACACTTTATTACATCAAG------------------CCAGCTTCTTCAGTATTTGTGTGAATGCATAGTCCCCAAACAGGGACTTGGGCTATTCCAAAAGATCCATCTCCTACTTAAATTGACGTATCCCTATGCCTCCACCA-GAAAATCTCTGACAGTTTTG
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80743732 155 - 137757926 CTCCCTTTCCACACTTTATTACATCAAG------------------CCAGCTTCTTCAGTATTTGTGTGAATGCATAGTCCCCAAACAGGGACTTGGGCTATTCCAAAAGATCCATCTCCTACTTAAATTGACGTATCCCTATGCCTCCACCA-GAAAATCTCTGACAGTTTTG
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78694068 155 - 132286798 CTCCCTTTCCACACTTTATTACATCAAG------------------CCAGCTTCTTCAGTATTTGTATGAATGCATAGTTCCCAAACAGGGACTTGGGCTATTCCAAAAGATCCATCTCCTACTTAAATTGACGTATCCCTATGCCTCCACCA-GAAAAtctctgatagtttta
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74617054 155 - 128539186 CTCCCTTTCCACACTTTATTACATCAAG------------------CCAGCTTCTTCAGTATTTGTGTGAATGCATAGTCCCCAAACAGGGACTTGGGCTATTCCAAAAGATCCATCTCCTACTTAAATTGACGTATCCCTATGCCTCCACCA-GAAAATCTCTGACAGTTTTG
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77417344 153 - 124281992 CTCCCTTTCCACAGTTAACTATATCATG------------------CCAGCTTCTTCAGTATTTGTGTGAATGCATAGTCCCCAAAAAGGGACTTGGTCTATTCCAAAGGATCTATTTTCTATTTAAATTGACATATCCCTATACTTCTACCA-GAAAA--TCTGACAGTTTTG
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67312234 170 -  69331447 CTCCCTTCCTACACATGACTATGTCAAGACATATGATTATGTCAAACCAGCTTCTTGAGTATTTGTGTGAATGCATAGCACCCAA--AGGGAGTTGGGCTAGACCAA--GATCAGTTTTCCACCTGAAAAGACCTGTCCCTGTGCCCTCACCACAAAAATTTCTGACAGTTTTG
i canFam3.chr10             I 159 C 0
e mm10.chr10                126856541 2499 + 130694993 I

a score=518109.000000
s hg38.chr12_GL383550v2_alt     94592 180 +    169178 GAACGGAACAGAAccagacactgtggc-catgtctatagt-cccagctactcaggaagctgaggttggaggatcgcttgagctcaggaatctggagctgtcatgctctatgatcgtgcctgtaaatagtcactgcactccagcctgggcaacatagtgataccctgtcttttaaagaaaaaa
s panTro4.chr12              31332026 180 + 134246214 GAATGGAACAGAAccagacactgtggcacatgtctatagt-cccagctactcaggaagctgaggtgggaggatcgcttgagctcaggaatctggagctgtcatgctctatgatcgtgcctgtaaatagtcactgcactccagcctgggcaacatagtgataccctgtcttttaaag-aaaaa
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78528161 180 - 136387465 AAATGGAACAGAgccaggcactgtggcacatgtctatagt-cccagctactcaggaagctggggtaggaggatcgcttgagctcaggagtctggggctgtcatgctctatgatcgtgcctgtaaatagtcactgcactctagcctgggcaacatagtgagaccctgtctttcaaag-aaaaa
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54744818 180 + 123690457 AAATGGAACAGAgccaggcactgtggcatatgtctatagt-cccagctactcaggaagctgaggtaggagggtcacttgagctaaggagtctggggctgtcatgctctatgatcgtgcctataaatagtcactgcactccagccggggcaacatagtaagaccctgtcttttaaag-aaaaa
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79641822 181 - 134985053 AAATGGAACAGAgccaggctctgtggcacatgtctatagt-cccagctactcaggaagctgaggtaggaagatcacttgagctcaggagtctggggttgtcttgctctctgatcgtgactatgaatagttactgcactccaacctgggcaacatggtgagaccctgtcttttaaataaaaaa
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80743887 181 - 137757926 AAATGGAACAGAgccaggctctgtggcacatgtctatagt-cccagctactcaggaagctgaggtaggaggatcacttgagctcaggagtctggggttgtcttgctctctgatcgtgcctatgaatagttactgcactccaacctgggcaacatggtgagaccctgtcttttaaataaaaaa
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78694223 181 - 132286798 aaatggaacagagccaggctctgtggcacatgtctatagt-cccagctactcaggaagttgaggtaggaggatcacttgagctcaggagtctgggGTTGTCTTGCTCTCTGATCGTGCCTatgaatagtcactgcactccagcctgggcaacatggtgagaccctgtcttttaaagaaaaaa
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74617209 181 - 128539186 AAACGGAACAGAgccaggctctgtggcacatgtgtatagt-cccagctactcaggaagctgaggtaggaggatcacttgagctcaggggtctggggttgtcttgctctctgatcgtgcctatgaatagtcaccacactccaacctgggcaacatggtgagaccctgtcttttaaagaaaaaa
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77417497 180 - 124281992 AAATGAAACAGAGAcaggcactgtggcgcatgtctatagtccccagctactcaggaagctgaagtaggaggatcgctggagctca--agtttggggctgtcatgctctatgatcatgtcagtgaatagtcactacactccagcctgggcaacatactgaaaccctgtcttttaaagaaaaaa
i calJac3.chr9              C 0 C 0
e mm10.chr10                126856541 2499 + 130694993 I
e canFam3.chr10              67312404   0 -  69331447 C

a score=503188.000000
s hg38.chr12_GL383550v2_alt     94772 177 +    169178 aaaGTGGAACAGAAAAATGTCAAGGCTCACAGCTTCAATAGTAGTTGTTTATGTGTTCATGTATGTATGCCAGGAGT------GG-AAGGG-TAATGTGTTTTGGGGA----------TGTGTGTGTGTGCACC-----TTATAGTATGTATT-TATATAGTAAGT-GTGTGTGAGCGTATGTGT-TATGAGAAACATCACTG
s panTro4.chr12              31332206 177 + 134246214 aaaGTGGAACAGAAAAATGTCAAGGCTCACAGCTTCAATGGTAGTTGTTTATGTGTTCATGTATGTATGCCAGGAGT------GG-AAGGG-TAATGTGTTTTGGGGA----------TGTGTGTGTGTGCACC-----TTATAGTATGTATT-TATATAGTAAGT-GTGTGTGAGCGTATGTGT-TATGAGAAACATCACTG
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78528341 181 - 136387465 aaaGTGGAACAGAAAAATGTCAAGGCTCACAGCTTCAATAGTAGTTGTTTGTGCGTCCATTTCTGTATGCCAGGAGT------GG-AAGGG-TAATGTGTTTTGGGGA------TATGTGTGTGTGTGTGCAGA-----TTATAGTGTGTATT-TATATAGTAAGT-GTGTGTGAGCGTATGTGT-TATGAGAAACATCACTG
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54744998 181 + 123690457 aaagtggaacagaaaaaTGTCAAGGCTCACAGCTTCAATAGTAGTTGTTTGTGTGTTCATGTATGTATGCCAGGAGT------GG-AAGGG-TAAtgtgttttgggga------tgtgcgtgtgtgtgtgcaca-----ttatagtatgtatt-tatgtagtaagt-gtgtgtgagcgtatgtgt-TATGAGAAACATCACTG
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79642003 189 - 134985053 aaaGTGGAACAGAAAAATGTCAAGGTTCACAGCTTCAATAGTCGTTGTTTGTGTGTTCATGTATGTATGCCAGGAGT------GG-AAGAG-TAATGTGTTTTGGGGA--tgtgtgtgtgtgtatgtgtgcacatgtgtttat-gtatgtgtt-tatgtagtaagt-gtgtgtgagtgcatgtgt-TATGAGAAACATCACTG
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80744068 189 - 137757926 aaaGTGGAACAGAAAAATGTCAAGGTTCACAGCTTCAATAGTCGTTGTTTGTGTGTTCATGTATGTATGCCAGGAGT------GG-AAGAG-TAAtgtgttttgggga--tgtgtgtgtgtgtatgtgtgcacatgtgtttat-gtatgtgtt-tatgtagtaagt-gtgtgtgagtgcatgtgt-TATGAGAAACATCACTG
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78694404 189 - 132286798 aaagtggaacagAAAAATGTCAAGGTTCACAGCTTCAATAGTAGTTGTTTGTGTGTTCatgtatgtatgccaggagt------gg-aagag-taatgtgttttgggga--tgtgtgtgtatgtatgtgtgcacatgtgtttat-gtatgtgtt-tatgtagtaagt-gtgtgtgagtgcatgtgt-tatgAGAAACCTCACTG
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74617390 185 - 128539186 aaaGTGGAACAGAAAAATGCCAAGGTTCACAGCTTCAATAGTAGTTGTTTGTGTGTTCATGTATGTATGCCAGGAGT------GG-AAGCG-TAAtgtgttttggggatgtgtgtgtgtgtgtatgtgtgcacatgtgtttat-gtatgtgtt-tatgta-------gtgtgtgagtgcatgtgt-TATGAGAAACATCACTG
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77417677 189 - 124281992 atagtgaaacagaaaaaTGTTAAGGCTAACAGCTTCAATAGTAGTTGTTTGGGTGTTCATGTATGTATGTCAGGAGT------GGTAAGAG-TAGTGTGTTTTGGGGA------tgtgtgtgtgtgtgtgtgtgtgtgtgtgt-gtACATGTTAAATGTGTTATGTGGTGTTTGGGAGCATATGTATATGAGAAACATCCCTG
i calJac3.chr9              C 0 M 706
s canFam3.chr10              67312404 139 -  69331447 AAAGTGGAAC-------------------TAGCTTCAATAGTGGTTGTTGGAGAG-------------GGAGGGAGTCTTAAGGG-AGGAGTTAGTGTGTCTTCGCAA----------TTTGTCTGT------------TTAT-GTATCTG---TACATGGTGGGT-GGGTGTGAGCATATGTAT-CATGA-AAACATCAC--
i canFam3.chr10             C 0 C 0
e mm10.chr10                126856541 2499 + 130694993 I

a score=474308.000000
s hg38.chr12_GL383550v2_alt     94949 190 +    169178 TCATACTTACCACTATCCTAAGAAAGGCAATAGTAAGAAAAACAACACAATTTCTATATTTCCTTAGGG---AAAAAAATTATTCAATACAATATTGTTTTAAGTGGAAAAACATATAT--TAGATAGAAAAATAAAATTATAGTACAAT-GAAATAcaacattttttagcacttagtaagtatcttcccaacact
s panTro4.chr12              31332383 190 + 134246214 TCATACTTACCACTATCCTAAGAAAGGCAATAGTAAGAAAAACAACACAATTTCTATATTTCCTTAGGG---AAAAAAATTATTCAATACAATATTGTTTCAAGTGGAAAAACATATAT--TAGATAGAAAAATAAAATTATAGTACAAT-GAAATAcaacattttttagcacttagtaagtatcttcccaacact
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78528522 188 - 136387465 TTATACTTACCACTATCCTAAGAAAGGCAGTAGTAAGAAAAACAACACAATTTCTATATTTCCTTAGGG---AAAAAAATTATTCAATACAATATTGTTTTAAGTGGAAAAACTTATAT----ATTAGAAAAATAAAATTATAGTAGAAT-GAAATGcaacattttttcgcacttagtaagtatcttcccaacact
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54745179 192 + 123690457 TTATACTTACTACTACCCTAAGAAAGGCAATAGTAAAAAAAAAAACACAATTTCTATATTTCCTTAGGG---AAAAAAATTATTCAATACCATATTGTTTTAAGTGGAAAAACTTATATATTAGATAGAAAAATAAAATTATAGTAGAAT-GAAATACAACATTTTTTAGCACTTAGTAAGTATCTTCCCAACACT
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79642192 188 - 134985053 TTATACTTACCACTATCCTAAGAAATACAATAGTAAGAAAAACAACACAATTTCTATATTTCCTTAGGG---AAAAAAATTATTCAATACAATATTGCTTTGAGTGGAAAAACTTATATATTAGATAGAGAAATAAAATCATAGTAGAAT-GAAATACGACAATTTTTAGCACTT----AGTATCTTCCCAACACT
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80744257 187 - 137757926 TTATACTTACCACTATCCTAAGAAATACAATAGTAAGAAAAACAACACAATTTCTATATTTCCTTAGGG----AAAAAATTATTCAATACAATATTGCTTTGAGTGGAAAAACTTATATATTAGATAGAGAAATAAAATCATAGTAGAAT-GAAATACGACAATTTTTAGCACTT----AGTATCTTCCCAACACT
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78694593 180 - 132286798 TTATACTTACCACTATCCTAAGAAAGACAATAGTaagaaaaacaacacaatttCTATATTTCCTTAggg----aaaaaattattcaatacaATATTGCTTTGAGTGGAAAAAC-------TTagatagagaaataaaattatagtagAAT-GAAATACAACAATGTTTAGCACTT----AGTATCTTCCCAACACT
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74617575 187 - 128539186 TTATACTTACCACTATCCTAAGGAAGACAATAGTAAGAAAAACAACACAATTTCTATATTTCCTTAGGG----AAAAAATTATTCAATACAATATTGCTTTGAGTGGAAAAACTTATATATTAGATACAGAAATAAAATTATAGTAGAAT-GAAATACAACAATTTTTAGCATTT----AGTATCTTCCCAACACT
i chlSab2.chr11             C 0 C 0
s canFam3.chr10              67312543 188 -  69331447 TTACACTTGCCATTGTCCCAAGGAGGATGATAGCATGAAAGATAACATAACTTCTGAATTCCCTTAAGGAAAAAAAAAAGTATTCAATATAAGATTTTTTTAAGTAGAAAAGTGT-TATATTGGATAGAAATATAGAATTAT----GAATAGAAAAAATacattttttagtattc---tagtacaatgccaacact
i canFam3.chr10             C 0 C 0
e mm10.chr10                126856541 2499 + 130694993 I
e calJac3.chr9               77417866 706 - 124281992 M

a score=118160.000000
s hg38.chr12_GL383550v2_alt     95139 65 +    169178 gtatgctatggcctaatgtttgtgtctgcccctggcaaaattctcttt---------------ttttttttttttttttt
s panTro4.chr12              31332573 80 + 134246214 gtatgctatggcctaatgtttgtgtctgcccctagcaaaattctctttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78528710 77 - 136387465 gtatgctacggcctaatgtttgtgtctgcccccagcaaaaTTCTCTTT---tgtgtgtgtgtgtgtgtgtgtgtgtgtgt
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54745371 65 + 123690457 GTATGCTATGGCCTAATGTTTGTGTCTGCCTCTGGCAAAATTCTCttt---------------ttttttttttttttttt
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79642380 63 - 134985053 GTATGCTGTGGCCTAACGTTTGTGTCTGC--CTGGCAAAATTCTCTCt---------------ttttttttttttttttt
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80744444 63 - 137757926 GTATGCTGTGGCCTAACGTTTGTGTCTGC--CTGGCAAAATTCTCttt---------------ttttttttttttttttt
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78694773 63 - 132286798 GTATGCTGTGGCCTAATGTTTGTGTCTGC--CTGGcaaaattctctct---------------ctccttttttttttttt
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74617762 63 - 128539186 GTATGCTGTGGCCTAATGTTTGTGTCTGC--CTGGCAAAATTCTCTCT---------------CTCtttttttttttttt
i chlSab2.chr11             C 0 I 8
e mm10.chr10                126856541 2499 + 130694993 I
e canFam3.chr10              67312731  0 -  69331447 C
e calJac3.chr9               77417866 706 - 124281992 M

a score=-3095.000000
s hg38.chr12_GL383550v2_alt     95204 12 +    169178 gtgtgtgtgtgt-------
s panTro4.chr12              31332653 12 + 134246214 gtgtgtgtgtgt-------
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78528787 12 - 136387465 gtgtgtgtgtgt-------
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54745436  5 + 123690457 -------ttttt-------
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79642443 12 - 134985053 -------tttttttttttt
i rheMac3.chr11             C 0 I 4
s macFas5.chr11              80744507 10 - 137757926 -------tttttttttt--
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78694836  6 - 132286798 -------tttttt------
i papAnu2.chr11             C 0 C 0
e mm10.chr10                126856541 2499 + 130694993 I
e canFam3.chr10              67312731  0 -  69331447 C
e calJac3.chr9               77417866 706 - 124281992 M
e chlSab2.chr11              74617825  8 - 128539186 I

a score=904.000000
s hg38.chr12_GL383550v2_alt     95216 2 +    169178 gt
s panTro4.chr12              31332665 2 + 134246214 tt
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78528799 2 - 136387465 gt
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54745441 2 + 123690457 tt
i nomLeu3.chr11             C 0 C 0
s macFas5.chr11              80744517 2 - 137757926 tt
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78694842 1 - 132286798 -t
i papAnu2.chr11             C 0 C 0
e mm10.chr10                126856541 2499 + 130694993 I
e canFam3.chr10              67312731 0 -  69331447 C
e calJac3.chr9               77417866 706 - 124281992 M
e chlSab2.chr11              74617825 8 - 128539186 I
e rheMac3.chr11              79642455 4 - 134985053 I

a score=25791.000000
s hg38.chr12_GL383550v2_alt     95218 18 +    169178 gtag-acag-agtcttgc-tc
s panTro4.chr12              31332667 18 + 134246214 gtag-acag-agtcttgc-tc
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78528801 18 - 136387465 gtag-acag-agtcttgc-tc
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54745443 21 + 123690457 GTAGAACAgaagtcttgcttc
i nomLeu3.chr11             C 0 C 0
s macFas5.chr11              80744519 18 - 137757926 gtag-actg-agtcttgc-tc
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78694843 18 - 132286798 gtag-actg-agtcttgc-tc
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74617833 18 - 128539186 gtag-actg-agtcttgc-tc
i chlSab2.chr11             I 8 C 0
e mm10.chr10                126856541 2499 + 130694993 I
e canFam3.chr10              67312731  0 -  69331447 C
e calJac3.chr9               77417866 706 - 124281992 M
e rheMac3.chr11              79642455  4 - 134985053 I

a score=674595.000000
s hg38.chr12_GL383550v2_alt     95236 306 +    169178 tgccacccaggctggagtacagg-------------------------------------------------ggcgcgatctctgattactgcaacctccgcctcctgagttcaagagattctcctgcctcaacctcccaagtagctggggctacaggcgtgtgccaccacacctggctaagttttgtatttttagtagagacagggtttcaccatgttggccaggctggtctcaaactcctgccctcaggtgatccgcccacctgggcctccc-aaaaatgctgagattacaggcgtaagccaccgtgcctggccacccttgcaaaattcttgtattgcaacctaattaccaatg
s panTro4.chr12              31332685 306 + 134246214 tgccacccaggctggagtacagg-------------------------------------------------ggcgcgatctctgattactgcaacctccgcctcctgagttcaagagattctcctgcctcaacctcccaagtagctggggctacaggcgtgtgccaccacacctggctaagttttgtatttttagtagagacagggtttcaccatgttggccaggctggtctcaaactcctgccctcaggtgatccgcccacctgggcctccc-aaaaatgctgagattacaggcgtaagccaccgtgcctggccacccttgcaaaattcttgtattgcaacctaattaccaatg
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78528819 306 - 136387465 tgccacccaggctggagtacagt-------------------------------------------------ggcacgatctctgattactgcaacctccaccccctgagttcaagggattctcctgcctcaacctcccaagtagctggggctacaggcatgtgccaccacacctggctaagttttgtatttttagtagagacagggtttcaccatgttggccaggctggtctcaaactcctgccctcaggtgatctgcccacctgggcctccc-aaaaatgctgagattacaggcgtaagccaccgtgcctggccacccttgcaaaattcttgtattgaaacctaattaccaatg
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54745464 299 + 123690457 tgccg-ccaggctggaatacagt-------------------------------------------------ggcatgatctt------ctgcaacctctgcctcctgagttcaagggattctcctgcctcaacctcccaagtagctggggctacaggcatgtgccaccacacctggctaagttttgtatttttagtaaagacagggtttcaccttgttggccaggctggtctcaaactcctgccctcaggtgatccgcccacctgggcctccc-aaaaatgctgagattacaggcgtaagccaccgtgcctggccACCCTTGCAAAATTCTTGTATTGAAACCTAATTACCAATG
i nomLeu3.chr11             C 0 M 100
s rheMac3.chr11              79642459 306 - 134985053 ----------------------tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn---------------------------cgcctcctgagttcaagggattctcctgcgtcaatctcccaagtagctggggttacaggtgtgtgccaccactcctggctaagttttgtatttttagtagagacagggtttcaccatgttggccaggctggtctcaaactcctgacctcaggtgatctgcccgcctctgcctccc-aaaaatgcagggattacaggtgtaagccaccgtgcccagtcACCCTTGcaaaattcttgtattgaaacctaattaccaatg
i rheMac3.chr11             I 4 C 0
s macFas5.chr11              80744537 306 - 137757926 tgtcacccacgctggagtacagt-------------------------------------------------ggcacgatctctgattactacaacctccacctcctgagttcaagggattctcctgcgtcaatctcccaagtagctggggttacaggtgtgtgccaccactcctggctaagttttgtatttttagtagagacagggtttcaccatgttggccaggctggtctcaaactcctgacctcaggtgatctgcccgcctctgcctccc-aaaaatgcagggattacaggtgtaagccaccgtgcccagtcACCCTTGcaaaattcttgtattgaaacctaattaccaatg
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78694861 306 - 132286798 tgtcacccacgctggagtacagt-------------------------------------------------ggcacgatctctgatTACTacatcctccgcctcctgagttcaagggattctcctgcgttaatctcccaagtagctggggttacaggtgtgtgccaccactcctggctaagttttgtatttttagtagagacagggtttcaccatgttggccaggctggtctcaaactcctgacctcaggtgatctgcccgcctctgcctccc-aaaaatgcagagattacaggtgtaagccaccgtgcccagtcaccCTTGCAAAATTCCTGTATTGAAACCTAATTATCAATG
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74617851 307 - 128539186 tgtcacccacactggagtacagt-------------------------------------------------ggcacgatctctgattactacaacctccgcctcctgagttcaagggattctcctgcatcaatctcccaagtagttggggttacaggcgcgtgccaccacacctggctaagttttgtatttttagtagagacagggtttcaccatgttggccaggctggtctcaaactcctgacttcaggtgatctgcccgcctctgcctcccaaaaaatgcagagattacagatgtaagccaccgtgcccggtcACCCTTGcaaaattcttgtattgaaacctaattaccaatg
i chlSab2.chr11             C 0 C 0
e mm10.chr10                126856541 2499 + 130694993 I
e canFam3.chr10              67312731   0 -  69331447 C
e calJac3.chr9               77417866 706 - 124281992 M

a score=4011.000000
s hg38.chr12_GL383550v2_alt     95542 2 +    169178 tg
s panTro4.chr12              31332991 2 + 134246214 tg
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78529125 2 - 136387465 tg
i ponAbe2.chr12             C 0 C 0
s rheMac3.chr11              79642765 2 - 134985053 tg
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80744843 2 - 137757926 tg
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78695167 2 - 132286798 TG
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74618158 2 - 128539186 tg
i chlSab2.chr11             C 0 C 0
e mm10.chr10                126856541 2499 + 130694993 I
e canFam3.chr10              67312731 0 -  69331447 C
e calJac3.chr9               77417866 706 - 124281992 M
e nomLeu3.chr11              54745763 100 + 123690457 M

a score=456899.000000
s hg38.chr12_GL383550v2_alt     95544 190 +    169178 atggtaattggaggtgggcctttggaaagtggttaggatgtgaaggcagagccctcatgaataggattggtcccattataagaagagactctagagagatgctttgccccttctaccacatgaggacacagcaagaatgtgccattctataaaccaggaagtaggtcctcaccagacaccaaatctgtca
s panTro4.chr12              31332993 190 + 134246214 atggtaattggaggtgggcctttggaaagtggttaggacatgaaggcagagccctcatgaataggattggtcccattataagaagagactctagagagatgctttgccccttctaccacatgaggacacagcaagaatgtgccattctataaaccaggaagtaggtcctcaccagacaccaaatctgtca
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78529127 190 - 136387465 atggtaattggaggtgggcctttggaaagtggttaggacatgaaggcagagccctcatgaataggattggtcccattataagaagagactctagagagatgctttgccccttctaccacatgaggacacagcaagaatgtgccattctataaaccaggaagtaggtcctctccagacaccaaatctgtca
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54745863 190 + 123690457 atggtaattggaggtaggcctttggaaagtggttaggacatgaaggcagagccctcatgaataggattggtcccattataagaagagactctagagagatgctttgccccttctaccacatgaggacacagcaagagtgtgccattctataaaccaggaagtaggtccttaccagacaccaaatctctca
i nomLeu3.chr11             M 100 C 0
s rheMac3.chr11              79642767 188 - 134985053 atggtaattggaggtgggccttcggaaagtggttaggacatgaaggcagagccctcatgaataggatt-gtcccattacaagaagaga-tccagagagatgctttgccctttctaccatgtgaggacatagcaagaatgtgccattctgtaaaccaggaactgggtcctcaccagacaccaaatctgtca
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80744845 188 - 137757926 atggtaattggaggtgggccttcggaaagtggttaggacatgaaggcagagccctcatgaataggatt-gtcccattccaagaagaga-tccagagagatgctttgccctttctaccatgtgaggacatagcaagaatgtgccattctgtaaaccaggaactgggtcctcaccagacaccaaatctgtca
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78695169 188 - 132286798 ATAGTAATTGGAGGTGGGCCTTCGGAAACTGGTTAGgacatgaaggcagagccctcatgaataggatt-gtCCCATTACAAGAAGAGA-TCCAGAGAGATGCTTTGccctttctaccatgtgaggacatagcaagaatgTGCCATTCTGTAAACCAGGAactgggtcctcaccagacaccaaatctgtca
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74618160 190 - 128539186 atggtaattggaggtgggccttcggaaagtggttaggacatgaaggcagagccctcatgaataggattggtcccattacaagaagagactccagagagatgctttgccctttctaccatgtgaggacatagcaagaatgtgccattctgtaaaccaggaactgggtcctcaccagacaccaaatctgtca
i chlSab2.chr11             C 0 C 0
e mm10.chr10                126856541 2499 + 130694993 I
e canFam3.chr10              67312731   0 -  69331447 C
e calJac3.chr9               77417866 706 - 124281992 M

a score=373300.000000
s hg38.chr12_GL383550v2_alt     95734 115 +    169178 gcaccttgatcttagacttcccagcctccaggacagtgaaaaataaaattctgttgtttataagctaccttgtctatgatattttgttataacagcccaaacagaccaagacacc
s panTro4.chr12              31333183 115 + 134246214 gcaccttgatcttagacttcccagcctccaggacagtgaaaaataaaattctgttgtttataagctaccttgtctatgatattttgttataacagcccaaacagaccaagacacc
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78529317 115 - 136387465 gcaccttgatcttagacttcccagcctccaggacagtgaaaaataaaattctgttgtttataagctaccttgtctatgatattttgttataacagcccaaacagaccaagacacc
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54746053 115 + 123690457 gcaccttgatcttagacttcccagcctccaggacagtgaaaaataaaattctgttgtttataagctaccttgtctatgatattttgttataacagcccaaacagaccaagacacc
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79642955 115 - 134985053 gcaccttggtcttagacttcccagcctccaggacagtgaaaaataaaattctgctgtttataagctaccttgtctatgatattttgttataacagcccaaacagaccaagacacc
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80745033 115 - 137757926 gcaccttggtcttagacttaccagcctccaggacagtgaaaaataaaattctgctgtttataagctaccttgtctatgatattttgttataacagcccaaacagaccaagacacc
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78695357 115 - 132286798 GCACCTTggtcttagacttcccagcctccaggacagtgaaaaataaaattctgctgtttataagctaccttgtctgtgatattttgttataacagcccaaaCAGACCAAGACACC
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74618350 115 - 128539186 gcaccttggtcttagacttcccagcctccaggacagtgaaaaataaaattctgctgtttataagctaccttgtctatgatattttgttataacagcccaaacagaccaagacacc
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77418574 115 - 124281992 gcaccttgatctttgacttcccagcctgcaggacagtgaaaaatagaattctgttgtttataagccactctgtctatggtattttattataacagcccaaacagaccaagacact
i calJac3.chr9              M 706 C 0
e mm10.chr10                126856541 2499 + 130694993 I
e canFam3.chr10              67312731   0 -  69331447 C

a score=5863144.000000
s hg38.chr12_GL383550v2_alt     95849 1766 +    169178  
s panTro4.chr12              31333298 1772 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78529432 1765 - 136387465  
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54746168 1768 + 123690457  
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79643070 1742 - 134985053  
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80745148 1742 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78695472 1733 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74618465 1760 - 128539186  
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77418689 1703 - 124281992  
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67312731 1674 -  69331447  
i canFam3.chr10             C 0 I 165
e mm10.chr10                126856541 2499 + 130694993 I

a score=1238847.000000
s hg38.chr12_GL383550v2_alt     97615 361 +    169178 GGTCCTATAATCTTTCATATTTTCATGTCCTTCTACGTAATGTCTAGATTGTTCTTCCAACCATTCCCTTTCCTGCCTCCTGCCACCATACATCAACAAAAGTTTACATATTAtctacctggccagttacagctcatatttcaagatccacct-aagggttaccttcaaggaccttctctgacctccctctcttatccctagttcaggtgttgggcccctccttgatgctcccataccacT-TAGACTTCtgaggcagatactgtaagttgcctactcaaaatcctttctgctgtctttcttactattagtactccaattctgttcagTGTCTGATGTGTCCAGTTAAAAATACTCATCTCTT
s panTro4.chr12              31335070 361 + 134246214 GGTCCTATAATCTTTCATATTTTCATGTCCTTCTACGTAATGTCTAGATTGTTCTTCCAACCATTCCCTTTCCTGCCTCCTGCCACCATACATCAACAAAAGTTTACATATTAtctacctggccagttacagcttatatttcaagatccacct-aagggttaccttcaaggaccttctctgacctccctctcttatccctagttcaggtgtggggtccctccttgatgctcccataccacT-TAGACTTCCGAggcagatactgtaagttgcctactcaaaatcctttctgctgtctttcttactattagtactccaattctgttcagtgtctgatgTGTCCAGTTAAAAATACTCATCTCTT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78531197 362 - 136387465 GGTCCTATAATCTTTCATATTTTCATGTCCTTCTACGTAATGTCTAGATTGTTCTTCCAACCATTCCCTTTCCTGCCTCCTGCCACCATACATCAACTAAAGTTTACATATTAtctacctggccagttatagctcatatttcaagatccacctcaagggttaccttcaaggaccttctctgacctccctctcttatccccagtccaggtttggggtacctccttgatgctcccataccacT-TAGACTTCtgaggcagatactgtaagttgcctactcaatatcctttctgctgtctttgttactatcagtactccaattctgttcagtgtatgatgtgtccaATTAAAAATACTCATCTCTT
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54747936 362 + 123690457 GGTCCTATAATCTTTCACATTTTCATGTCCTTCTACGTAATGTCTAGATTGTTCTTCCAACCATTCCCTTTCCTGCCTCCTGCCACCATACATCAACAAAAGTTTACATATTAtctacctggccagttacagctcatatttcaagatccacctcaaaggttaccttcaaggaccttctctgacctccctttcttatccccagtccaggtttggggtccctccttgatgctgccataccacT-TAGACTTCtgaggcagatactgtaagttgcctactcaatatcctttctgctgtctttcttactatcagtactccaattctgttcagtgtctgatgcgtccaGTTAAAAATACTCATCTCTT
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79644812 362 - 134985053 AGTCCTATAATCATTCATATTTTCATGTCCTTCTATGTAATATCTAGATTGTTCTTCCAACCATTCCCTTTCTGGCCTCCTGCCACCATACATCAACAGAAGTTTACATATTAtctacctggccagttatagttcatatttcaagatccacctcaaggcttaccttcaaggaccttctctgaccgctctctcttatccccagtccaggtttggggtccctccttgatactcccataccacT-TAGACTTCtgaggcagatactgtaagttgcctactcaatatcctttctgctgtctttcttactatcagtactccaattatgttcagtgtatgatgtgtccaATTAAAAATACTCATCTCTT
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80746890 362 - 137757926 AGTCCTATAATCATTCATATTTTCATGTCCTTCTATGTAATATCTAGATTGTTCTTCCAACCATTCCCTTTCTGGCCTCCTGCCACCATACATCAACAGAAGTTTACATATTAtctacctggccagttatagttcatatttcaagatccacctcaaggcttaccttcaaggaccttctctgaccgctctctcttatccccagtccaggtttggggtccctccttgatactcccataccacT-TAGACTTCtgaggcagatactgtaagttgcctactcaatatcctttctgctgtctttcttactatcagtactccaattatgttcagtgtatgatgtgtccaATTAAAAATACTCATCTCTT
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78697205 362 - 132286798 AGTCCTATAATCATTCATATTTTCATGTCCTTCTATGTAATATCTAGATTGTTCTTCCAACCATTCCCTTTCTGGCCTCCTGCCACCATACATCAACAGAAGTTTACATATTATCTACCTGGCCAGTTATAGTTCATATTTCAAGATCCACCTCAAGGCTTACCTTCAAGGACCTTCTCTGACTACTCTCTCTTATCCCCAGTCCAGGTTTGGGGTCCCTCCTTGATACTCCCATACCACT-TAGACTTCTGAGGCAGATACTGTAAGTTGCCTACTCAACATCCTTTCTGCTGTCTTTCTTACTATCAGTACTCCAATTATGTTCAGTGTATGATGTGTCCAATTAAAAATACTCATCTCtt
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74620225 362 - 128539186 AGTCCTATAATCATTCATATTTTCATGTTCTTCTATGTAATATCTAGATCGTTCTTCCAACCGTTCCCTTTCTGGCCTCCTGCCACCATACATCAACAGAAGTTTACATATTAtctacctggccagttatagttcatatttcaagatccacctcaaggcttaccttcaaggaccttctctgaccgctctctcttatcgccagtccaggtttggggtccctccttgatgctgccataccacT-TAGACTTCtgaggcagatactgtaagttgcctactcaatatcctttctgctgtctttcttactaccagtactccaattatgttcagTATATGATGTGTCCAGTTAAAAATACTCATCTCTT
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77420392 348 - 124281992 GGTCCTGTAATC---------TTATCGACCTTCTACATAATGTCTAGATTGTTCTTTCACCCATTCCCTTTTTTGCCTTCTGCCACCATACACCAACAAAAGTTCACATATTAtctacctggccaattatagctcgtctgtcaagatccaactcaagagttaccttcaaagaccttgcctgacctccctcgctt-cccgcagtccaggattggggttcctccttgattctcccataccacT-TAGACTTCtgaggcaaatactgtaagttgcctactcaatattctttctgctgtctttcttactgtcagtactccaattctgttcagtgtatGATATGTCCAATT-AAAATACTCATC---T
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67314570 355 -  69331447 GTGCCTATGGTCTACTGTGTTTCCAC-TTCATCTACATAATATCTAAAAAGTCCTTCTGTTCATCCCCTCTCCTGCCCCCTGCCACCATACACCAACACAAGCATACATATTGtctacttagcta-ttctaagtcatttttcaagacctagctcaagagtcattttcaaggaccttctctgaccaccctctctccaccctagtccaggtttggggtccatccttcatgctcccgtggcactctggacttcagaggcagaaactgtaagtt---tactcaatatcctttcctc---ccttctttctaacagaactccaattctcttcagtgtacaatgtgtccagttaaaaatactcattgcct
i canFam3.chr10             I 165 C 0
e mm10.chr10                126856541 2499 + 130694993 I

a score=390649.000000
s hg38.chr12_GL383550v2_alt     97976 138 +    169178 ggcc-gggtgcagtggctcattcctgtaatcccagaactttggaaaggtgaagcagggggatcacttgaggccaggagttcaagaacagcctgggcaacatagcaagacctagtctttta-aaa-atctaaatattagctg
s panTro4.chr12              31335431 138 + 134246214 ggcc-gggtgcagtggctcattcctgtaatcccagcactttggaaaggtgaagcagggggatcacttgaggccaggagttcaagaacagcctgggcaacatagcaagacctagtctttaa-aaa-atctaaatattagctg
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78531559 140 - 136387465 ggcctgggtgcagtggctcattcctgtaatcccagcactttggaaaggtgaagcagggagatcacttgaggccaggagttcaagaacagcctgggcaacatagcaagacctagtctctaa-aaacatctaaatattatctg
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54748298 139 + 123690457 ggcctgggtgcagtggctcattcctgtaatcccagcactttggaaaggtgaagcagggggatcacttgaggccaggagttcaagaacagcctgggcaacatagcaagacctagtctctaa-aaa-atctaaatattagctg
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79645174 139 - 134985053 ggcctgggtgcagtggctcattcctataatcccaggactttggaaaggtgaagcacggggatcacttgaggccaggagttcaagaacagcctgggcaacatagcaagacctagtctctaa-aaa-atctaaatattagctg
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80747252 139 - 137757926 ggcctgggtgcagtggctcattcctataatcccaggactttggaaaggtgaagcacggggatcacttgaggccaggagttcaagaacagcctgggcaacatagcaagacctagtctctaa-aaa-atctaaatattagctg
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78697567 139 - 132286798 ggcctgggtgcagtggctcattcctataatcccaggactttggaaaggTGAAGCacggggatcacttgaggccaggagttcaagaacagcctgggcaacatagcaagacctagtctctaa-aaa-atctaaatattagctg
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74620587 139 - 128539186 ggcctgggtgcagtggctcattcctataatcccagcactttggaaaggtgaagcagggggatcacttgaggccaggagttcaagaacagcctgggcaacatagcaagacctagactctaa-aaa-atctaaatattagctg
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77420740 136 - 124281992 ggcc-aggcccagtggctcatgcctgtaattgcagcactttggaaggctgaagcaggcagatcac--aaagtcaggagttt-agaccagcatgaccaacatggtgaaacaccatctctactaaa-aataaaaaattagctg
i calJac3.chr9              C 0 I 9076
e mm10.chr10                126856541 2499 + 130694993 I
e canFam3.chr10              67314925   0 -  69331447 C

a score=823602.000000
s hg38.chr12_GL383550v2_alt     98114 359 +    169178 ggtgtggtggcacatacttgtagtcccagctactcaagggacaggcaggaggattgcttgagctcaggagtttgaggttatagtgagctatgatcatgccactgcactccagtctaggtaacagagtgagactctgtccctaaaTATTTAGAGACTCTGTCTCTAAAAATTAATTAATTAATTAaaaaattatctgagcatgatggtgcatacttttagtcccaacttgggaggctgaggtgggaggatcacttgagcccaagagtttgaggttgcagcaacctagagtagtgtcactgcactccagcctgggcaagggagcaagacactgtctcaaaaaataaaaaTAATTcatcttc
s panTro4.chr12              31335569 359 + 134246214 ggtgtggtggcacatacttgtagtcccagctactcaagggacaggcaggaggattgcttgagctcaggagtttgaggttatagtgagctatgatcatgccactgcattccagtctaggtaacagagtgagactctgtccctaaaTATTTAGAGACTCTGTCTCtaaaaattaattaattaattaaaaaattatctgagcatgatggtgcatacttttagtcccaacttgggaggctgaggtggggggatcacttgagcccaagagtttgaggttgcagcaacctagagtagtgtcactgcactccagcctgggcaagggagcaagacactgtctcaaaaaataaaaaTAATTcatcttc
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78531699 359 - 136387465 ggtatggtggcacatacttgtagtcccagctactcaagagacaggcaggaggattgcttgagctcaggagttcgaggttatagtgagctatgatcatgccactgcactccagtctgggtaacagagtgagactctgtccctaaaCATTTAgagactctgtctctaaaaattaattaattaattaaaaaattatctgagcatggtggtgcatacttgtagtcccaacttgggaggctgaggtgggaggatcacttgagcccaagagtttgaggttgcagcaacttagagtagtgtcacttcactccagcctgggaaagggagcaagacattgtctcaaaaaataaaaaTAATTCATCTTC
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54748437 359 + 123690457 ggtgtggtggcacatacttgtagtcccagctactcaagagacaggcaggaggattgcttgagctcaggagttcaaggttatagtgagctatgatcatgccactgcactccagtctgggtaacagagtgagactctgtccctaaaCATTTAGAGACTCTATCTCTAAAaattaattaattaattaaaaaattaTctgagcatggtggtgcatacttgtagtcccaacttgggaggctgaggtgggaggatcacttgagcccaagagtttgaggttgcagcaacctagagtagtgtcactgcactccagcctgggcaagggagcaagacgctgtctcaaaaaataaaaaTAATTcatcttc
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79645313 335 - 134985053 ggtgtggtggcacatacttgtagtcccagctactcaagagacaggcaggaggatcacttgcgctcaagagttcaaggttatagtgagctctgatcatgccactgcactccagtctgggtaacagtgtgagactctgtcACTAAACATTTAgagactctgtctctaaaaattaattaatta----aaaaattatctgagcatggtggtgtatacttgtagtcccatcttgggaggctgaggtgggaggatcacttaagcccaagagtttgaggttgcagcaacctagagt--------------------tgggcaagggaacaagacactgtctcaaaaaataaaaaTAATTcatctcc
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80747391 335 - 137757926 ggtgtggtggcacatacttgtagtcccagctactcaagagacaggcaggaggatcacttgcgctcaagagttcaaggttatagtgagctctgatcatgccactgcactccagtctgggtaacagtgtgagactctgtcACTAAACATTTAgagactctgtctctaaaaattaattaatta----aaaaattatctgagcatggtggtgcatacttgtagtcccatcttgggaggctgaggtgggaggatcacttaagcccaagagtttgaggttgcagcaacatagagt--------------------tgggcaagggaacaagacactgtctcaaaaaataaaaaTAATTcatctcc
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78697706 335 - 132286798 ggtgtgctggcacatacttgtagtcccagctactcaagagacaggcaggaggatcacttgcgctcaagagttcaaggttatagtgagctctgatcatgccactgcactccagtctgggtaacagggtgagactctgtcactaAACAtttagagactctgtctctaaaaattaattaatta----aaaaattatctgagcatggtggtgcatacttgtagtcccatcttgggaggctgaggtgggaggatcacttaagcccaagagtttgaggttgcagcaACCTAGAGT--------------------TGGGCAAGGGAACAAgtcactgtctcaaaaaataaaaataattcatctcc
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74620726 339 - 128539186 ggtgtggtggcacatacttgtagtcccagctactcaagagacaggcaggaggatcacttgcactcaagagttcaaggttatagtgagctctgatcatgccactgcactccagtctgggtaacagagtgagactctgtcACTAAACATTTAgagactctgtctctaaaaattaattaattaatttaaaaattatctgagcatagtggtgcatacttatagtcccaacttgggaggctgaggtgggaggatcacttaagcccaagagtttgaggttgcagcaacctagagt--------------------tgagcaagggaacaagacactgtctcaaaaaataaaaaTAATTCATCTCC
i chlSab2.chr11             C 0 C 0
e mm10.chr10                126856541 2499 + 130694993 I
e canFam3.chr10              67314925   0 -  69331447 C
e calJac3.chr9               77420876 9076 - 124281992 I

a score=2982444.000000
s hg38.chr12_GL383550v2_alt     98473 1054 +    169178  
s panTro4.chr12              31335928 1054 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78532058 1058 - 136387465  
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54748796 1055 + 123690457  
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79645648 1058 - 134985053  
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80747726 1058 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78698041 1058 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74621065 1058 - 128539186  
i chlSab2.chr11             C 0 C 0
s canFam3.chr10              67314925 1139 -  69331447  
i canFam3.chr10             C 0 I 235
e mm10.chr10                126856541 2499 + 130694993 I
e calJac3.chr9               77420876 9076 - 124281992 I

a score=342176.000000
s hg38.chr12_GL383550v2_alt     99527 135 +    169178 Tgagcagattctgggaagatgatgaagtaggaagcaccaggagtctgtctcttcatttgaacaacactgcagtggtagaatttgtctggtggaactatttagaactctagagtctattgaaggcctgtgacttcc
s panTro4.chr12              31336982 135 + 134246214 Tgagcagattctgggaagatgatgaagtaggaagcaccaggagtctgtctcttcatttgaacaacactgcagtggtagaatttgtctggtggaactatttagaactctagagtctattgaaggcctgtgacttcc
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78533116 135 - 136387465 Tgagcagattctaggacgatgatgaagtaggaagcaccaggagtctgtctcttcatttaaacaacactgtagtggtagaatttgtctggtggaactatttagaactctagagtctattgaaggcctgtgacttcc
i ponAbe2.chr12             C 0 I 359
s nomLeu3.chr11              54749851 135 + 123690457 Tgagcagattctgggaagatgatgaagtaggaagcaccaggagtctgtctcttcatttaaacaacactgcagtggtagaatttgtctggtggaactatttagaactctagagtctattgaaggcctgtgacttcc
i nomLeu3.chr11             C 0 I 8310
s rheMac3.chr11              79646706 135 - 134985053 Tgagcagattctgggaagatgatgaagtaggaagcaccagcagtctgtctcttcatctaaacaacactgcagtagtagaatttgtctgatggaactatttggaactctagagtctattgaaggcctgtgacttcc
i rheMac3.chr11             C 0 I 7015
s macFas5.chr11              80748784 135 - 137757926 Tgagcagattctgggaagatgatgaagtaggaagcaccagcagtctgtctcttcatctaaacaacactgcagtagtagaatttgtctgatggaactatttggaactctagagtctattgaaggcctgtgacttcc
i macFas5.chr11             C 0 I 1009
s papAnu2.chr11              78699099 135 - 132286798 TGAGCAGATTCTGGGAAGATGATGAAGTAGGAAGCACCAGCAGTCTGTCTCTTCATCTAAACAACACTGCAGTAGTAGAATTTGTCTGATGGAACTATTTGGAACTCTAGAGTCTATTGAAGGCCTGTGACTTCC
i papAnu2.chr11             C 0 I 359
s chlSab2.chr11              74622123 135 - 128539186 Tgagcagattctgggaagatgatgaagtaggaagcaccagcagtctgtctcttcatctaaacaacactgcagtagtagaatttgtctgatggaactatttggaactctagagtctattgaaggcctgtgacttcc
i chlSab2.chr11             C 0 I 7356
e mm10.chr10                126856541 2499 + 130694993 I
e canFam3.chr10              67316064 235 -  69331447 I
e calJac3.chr9               77420876 9076 - 124281992 I

a score=1448.000000
s hg38.chr12_GL383550v2_alt     99662 6 +    169178 TGttct
s panTro4.chr12              31337117 6 + 134246214 tgttct
i panTro4.chr12             C 0 C 0
s papAnu2.chr11              78699593 6 - 132286798 cgtTCT
i papAnu2.chr11             I 359 C 0
e mm10.chr10                126856541 2499 + 130694993 I
e canFam3.chr10              67316064 235 -  69331447 I
e calJac3.chr9               77420876 9076 - 124281992 I
e chlSab2.chr11              74622258 7356 - 128539186 I
e macFas5.chr11              80748919 1009 - 137757926 I
e rheMac3.chr11              79646841 7015 - 134985053 I
e nomLeu3.chr11              54749986 8310 + 123690457 I
e ponAbe2.chr12              78533251 359 - 136387465 I

a score=1166084.000000
s hg38.chr12_GL383550v2_alt     99668 2245 +    169178  
s panTro4.chr12              31337123 2245 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78533610 2234 - 136387465  
i ponAbe2.chr12             I 359 C 0
s papAnu2.chr11              78699599 2240 - 132286798  
i papAnu2.chr11             C 0 C 0
e mm10.chr10                126856541 2499 + 130694993 I
e canFam3.chr10              67316064  235 -  69331447 I
e calJac3.chr9               77420876 9076 - 124281992 I
e chlSab2.chr11              74622258 7356 - 128539186 I
e macFas5.chr11              80748919 1009 - 137757926 I
e rheMac3.chr11              79646841 7015 - 134985053 I
e nomLeu3.chr11              54749986 8310 + 123690457 I

a score=997044.000000
s hg38.chr12_GL383550v2_alt    101913 1192 +    169178  
s panTro4.chr12              31339368 1189 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78535844 1185 - 136387465  
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54758296 1166 + 123690457  
i nomLeu3.chr11             I 8310 C 0
s papAnu2.chr11              78701839 1189 - 132286798  
i papAnu2.chr11             C 0 C 0
e mm10.chr10                126856541 2499 + 130694993 I
e canFam3.chr10              67316064  235 -  69331447 I
e calJac3.chr9               77420876 9076 - 124281992 I
e chlSab2.chr11              74622258 7356 - 128539186 I
e macFas5.chr11              80748919 1009 - 137757926 I
e rheMac3.chr11              79646841 7015 - 134985053 I

a score=2463577.000000
s hg38.chr12_GL383550v2_alt    103105 2034 +    169178  
s panTro4.chr12              31340557 2038 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78537029 2090 - 136387465  
i ponAbe2.chr12             C 0 I 1562
s nomLeu3.chr11              54759462 1966 + 123690457  
i nomLeu3.chr11             C 0 C 0
s macFas5.chr11              80749928 1947 - 137757926  
i macFas5.chr11             I 1009 C 0
s papAnu2.chr11              78703028 1943 - 132286798  
i papAnu2.chr11             C 0 C 0
e mm10.chr10                126856541 2499 + 130694993 I
e canFam3.chr10              67316064  235 -  69331447 I
e calJac3.chr9               77420876 9076 - 124281992 I
e chlSab2.chr11              74622258 7356 - 128539186 I
e rheMac3.chr11              79646841 7015 - 134985053 I

a score=1362915.000000
s hg38.chr12_GL383550v2_alt    105139 1053 +    169178  
s panTro4.chr12              31342595 1053 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78540681 1029 - 136387465  
i ponAbe2.chr12             I 1562 I 4
s nomLeu3.chr11              54761428 1053 + 123690457  
i nomLeu3.chr11             C 0 I 6
s macFas5.chr11              80751875 1118 - 137757926  
i macFas5.chr11             C 0 I 2
s papAnu2.chr11              78704971 1140 - 132286798  
i papAnu2.chr11             C 0 I 2
e mm10.chr10                126856541 2499 + 130694993 I
e canFam3.chr10              67316064  235 -  69331447 I
e calJac3.chr9               77420876 9076 - 124281992 I
e chlSab2.chr11              74622258 7356 - 128539186 I
e rheMac3.chr11              79646841 7015 - 134985053 I

a score=236363.000000
s hg38.chr12_GL383550v2_alt    106192 126 +    169178 atatatatggtcaaatgatttttgacaagaatgccaagactattcagtggggaaaagacagtcttttcaacaaataatcctgggaaaatgggatattcacttgcaaaagaataaaactggatcctt
s panTro4.chr12              31343648 125 + 134246214 atatatatggtcaaatgatttttgacaagaatgccaagactattcagtggggaaaagacagtcttttcaacaaataatcctgggaaaatgggatattcacttgcaaaa-aataaaactggatcctt
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78541714 126 - 136387465 atatatatggtcaaatgatttttgacaagaatgccaagactattcagtggggaaaagacagtcttttcaacaaataatcctgggaaaatgggatattcacatgcaaaagaataaaactgaatcctt
i ponAbe2.chr12             I 4 C 0
s nomLeu3.chr11              54762487 126 + 123690457 atatatatggtcaaatgatttttgacaagaataccaagactattcagtggggaaaagacagtcttttcaacaaataatcctgggaaaatgggatattcacatgcaaaagaataaaactggatcctt
i nomLeu3.chr11             I 6 C 0
s macFas5.chr11              80752995 126 - 137757926 atatatatggtcaaatgatttttgacaagaatgccaagaccattcagtggggaaaagacagtcttttcaacaaagaatcctgggaaaatgggatattcacatgcaaaagaataaaattggatcctt
i macFas5.chr11             I 2 C 0
s papAnu2.chr11              78706113 126 - 132286798 atatatatggtcaaatgatttttgacaagaatgccaagaccattcagtggggaaaagacagtcttttcaacaaagaaTCCTGGGAAAAtgggatattcacatgcaaaagaataaaattggatccTT
i papAnu2.chr11             I 2 C 0
s chlSab2.chr11              74629614 126 - 128539186 atatatatggtcaaatgatttttgacaagaatgccaagaccattcagtggggaaaagacagtcttttcaacaaagaatcctgggaaaatgggatattcacatgcaaaagaataaaattggatcctt
i chlSab2.chr11             I 7356 C 0
e mm10.chr10                126856541 2499 + 130694993 I
e canFam3.chr10              67316064 235 -  69331447 I
e calJac3.chr9               77420876 9076 - 124281992 I
e rheMac3.chr11              79646841 7015 - 134985053 I

a score=1215370.000000
s hg38.chr12_GL383550v2_alt    106318 512 +    169178  
s panTro4.chr12              31343773 512 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78541840 512 - 136387465  
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54762613 509 + 123690457  
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79653856 497 - 134985053  
i rheMac3.chr11             I 7015 C 0
s macFas5.chr11              80753121 497 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78706239 497 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74629740 497 - 128539186  
i chlSab2.chr11             C 0 C 0
e mm10.chr10                126856541 2499 + 130694993 I
e canFam3.chr10              67316064 235 -  69331447 I
e calJac3.chr9               77420876 9076 - 124281992 I

a score=1052016.000000
s hg38.chr12_GL383550v2_alt    106830 365 +    169178 caaaa-tgggcaaaagtcttaaggtgactcaccTTCTTTGCGGGATGCCTGGGAGTTGCCATCTGCTCATCCCCATTGGCCTTAAAAAGCCAGTGGACCAAAAGGTGGCAGTCT--------TTTTTTTCTACAAACAGGAATTGGAAGCAGTGGCTGGCAGGCCAGTGCGATCTCTGGTTCCTGTCTATTTATGAGCCTACTCTCTATGAGTCCTGTGGTGGCCTCAGAGCTGGCAGAAGCACACTGGGTTTGTCCCTGCCTCCCTCCAACTATGAGTTGGGCCATACTAAACTGCCCACCATATTGAAAAAAAAAAGTTTTaatgggcaaaagatttgaacagacatttcttt----aaagaaaatacacaaatag
s panTro4.chr12              31344285 365 + 134246214 caaaa-tgggcaaaagtcttaaggtgactcaccTTCTTTGCGGGATGCCTGGGAGTTGCCATCTGCTCATCCCCATTGGCCTTAAAAAGCCAGTGGACCAAAAGGTGGCAGTCT--------TTTTTTTCTACAAACAGGAATTGGAAGCAGTGGCTGGCAGGCCAGTGCGATCTCTGGTTCCTGTCTATTTATGAGCCTACTCTCTATGAGTCCTGTGGTGGCCTCAGAGCTGGCAGAAGCACACTGGGTTTGTCCCTGCCTCCCTCCAACTATGAGTTGGGCCATACTAAACTGCCCACAATATTGAAAAAAAAAATTTTTaatgggcaaaagatttgaacagacatttcttt----aaagaaaatacacaaatag
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78542352 366 - 136387465 caaaactgggcaaaagtcttaaggtgactcaccTTCTTTGCGGGATGCCTGGGAGTTGCCATCTGCTCATCCCCATTGGCCTTAAAAAGCCAATGGACCAAAAGGTGGCAGTCT--------TTTTTTTCTACAAACAGGAATTGGAAGCAGTGGCTGGTAGGCCAGTGCGATCTCTGGTTCCTGTCTATTTATGAGCCTACTCTCTATGAGTCCTGTGGTGGCCTCAGAGCTGGCAGAAGCACACTGGGTTTGTCCCTGCCTCCCTCCAACTATGAGTTGGGCCATACTAAACTGCCCACAATATTGAAAAAAAAAAGTTTTaatgagcaaaagatttaaatagacatttcttt----aaagaaaatacacaaatag
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54763122 357 + 123690457 caaaaatgggcaaaagtcttaaggtgactcac---cTTTGCGGGATGCCTCGGAGTTGCCATCTGCTCAACCCCATTGGCCTTAAAAAGCCAATGGACCAAAAGGTGGCAGTCT--------TTTTTTCCTACAAACAGGAATTGGAAGCAGTGGCTGGCAGGCCAGTGCGATCTCTGGTTC----CTATTTATGAGCCTACTCTCTATGAGTCCTGTGGTGGCCTCAGAGCTGGCAGAAGCACACTGGGTTTGTCCCTGCCTCCCTCCAACTATGAGTTGGGCCATACTAAACTGTCCACAATATTG--AAAAAAAAGTGTTaatgggcaaaagatttaaatagacatctcttt----aaagaaaatacacaaatag
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79654353 369 - 134985053 caaagatgagcaaaagtcttaaGGTGACTCATCTACTTTGCAGGATGCCTGGGAGTTGCCATCTGTTCATCCCCTTTACACTTACAAAGCCAATGGACCAAAAGGTGGCTGTCT-----TTTTTTTTTTCTACAAACAGGAATTGGAAGTAGTGGCCGGCAGGGCAGTGCAACCTCTGGTTCCTGTCTATTCATGAGCCTACTCTCTTTGAGTCCTGCGGTGGCCTCAGAGCTGGCAGAAACACACTGGGTTTGCCCCTGCCTCCCTCCAACTATGAGATGGGCCATACTAAACTGCCCACAATATTGAAAAAAAAAAGTTTTCatgggcaaaagatttaaacagacatttcttt----aaagaaaatacacaaatag
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80753618 369 - 137757926 caaaaatgagcaaaagtcttaaggtgacTCATCTACTTTGCAGGATGCCTGGGAGTTGCCATCTGCTCGTCCCCTTTACACTTACAAAGCCAATGGACCAAAAGGTGGCTGGCT-----GTTTTTTTTTCTACAAACAGGAATTGGAAGTAGTGGCCGGCAGGGCAGTGCAACCTCTGGTTCCTGTCTATTCATGAGCCTACTCTCTTTGAGTCCTGCGGTGGCCTCAGAGCTGGCAGAAACACACTGGGTTTGCCCCTGCCTCCCTCCAACTATGAGATGGGCCATACTAAACTGCCCACAATATTGAAAAAAAAAAGTTTTCatgggcaaaagatttaaacagacatttcttt----aaagaaaatacacaaatag
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78706736 368 - 132286798 caaaaatgagcaaaagtcTTAAGGTGACTCATCTACTTTGCAGGATGCCTGGGAGTTGCCATCTGCTCGTCCCCTTTACACTTACAAAGCCAATGGACCAAAAGgtggctgtct------tttttttttctacaaacaGGAATTGGAAGCAGTGGCCGGCAGGCCAGTGCAACCTCTGGTTCCTGTCTATTCATGAGCCTACTCTCTTTGAGTCCTGCAGTGGCCTCAGAGCTGGCAGAAACACACTGGGTttgcccctgcctccctccaacTATGAGATGGGCCATACTAAACTGCCcacaatattgaaaaaaaaaagttttaatgggcaaaagatttaaacagacatttcttt----aaagaaaatacacaaatag
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74630237 367 - 128539186 caaaaatgagcaaaagtcttaaggtgacTCATCTACTTTGCAGGATGCCTGGGAGTTGCCATCTGCTCGTCCCCTTTACACTTACAAAGCCAATGGACCAAAAGGTGGCTGTCT------TTTTTTTTTCTACAAACAGGAATTGGAAGCAGTGGCTGGCAGGCCAGTGCGACCTCTGGTTCCTGTCTATTCATGAGCCTACTCTCTTTGAGTCCTGTGGTGGCCTCAGAGCTGGCAGAAACATACTGGGTTTGCCCCTGCCTCCCTCCAACTATGAGATGGGCCATACTAAACTGCCCACAATATTG-AAAAAAAAAGTTTTaatgggcaaaagatttaaacagacatttcttt----aaggaaaatacacaaatag
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77429952 365 - 124281992 cAAAA-TGGGCAA-------AAGGTGACTCACCTACTTTGCGGGATGCCTGGGAGTTGCCATCTGCTCATCCCCTTTGCACTTAAAAAGCCAACCGACCAAAAGGTGGCAGTCTTTTTTTTTTTTTTTCCTACAAACAGGAACTGGAAGCAGTGGCTGGTAGGCCAGTGTGATCTCTGGCTC----CTATTTATAAGCCCACTTGCTATGAGTCCTGTGGAGGCCTCAGAGCTGGCAGAAGCATGCTGGG-TTGTCCCTGCCTCACGTCAACAATGAGTTGGGCCATACTAAACTCCCCACAGTATTAAAAAACAAAACTTTCaatagacagaagatttaaatagacatttcttttttaaaaaaaaatacacaaatag
i calJac3.chr9              I 9076 I 990
e mm10.chr10                126856541 2499 + 130694993 I
e canFam3.chr10              67316064 235 -  69331447 I

a score=1039748.000000
s hg38.chr12_GL383550v2_alt    107195 426 +    169178 ccaataagcacatgaaaagatgttcaacattactaatcactggggaaatgcaaatcaaaacaatgagatatcacctcacacccattaagagggctactgccaaaagaacagaacagaacagaagtgttggagagggtgtggagaaattgggacccttgtgtactgttggtgaaaatgtaaaatgttacagccgctgtgaaaaacagtatgacagttcctc-aaaaatttaaaaattggattaacttatgatccaggaattctatttctgtacccaaaaaaagctgaaagcagggcctcaaaggatatttgtatacccatgttggtagcagcatttttgag-----ctaaaccatgaaagcaacccatggtccatcaatggatgaatggataagctaaatgtggtatatctgtacaatgaaatatatttcacc
s panTro4.chr12              31344650 426 + 134246214 ccaataagcacatgaaaagatgttcaacattactaatcactggggaaatgcaaatcaaaacaatgagatatcacctcacacccattaagagggctactgccaaaagaacagaacagaacagaagtgttggagagggtgtggagaaattgggacccttgtgtactgttggtgaaaatgtaaaatgttacagccactgtgaaaaacagtatgacagttcctc-aaaaatttaaaaattggattaactaatgatccagcaattctatttctgtacccaaaaaaagctgaaagcagggcctcaaaggatatttgtatacccatgttggtagcagcatttttgag-----ctaaaccatgaaagcaacccatggtccatcaatggatgaatggataagctaaatgtggtatatctgtacaatgaaatatatttcacc
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78542718 427 - 136387465 ccaataagcacatgaaaagatgttcaacatcactaatcattggggaaatgcaaatcaaaacaatgacataccacctcacactcattaagagggctactgccaaaagaacagaacaaaacagaagtgttggagagggtgtggagaaattgggacccttgtgtactgttggtgaaaatgtaaaatgttacagccgctgtggaaaacagtatgacagttcctcaaaaaatttaaaaattggattaacttatgatccagcaattctatttctgtacccaaaaaaagctgaaagcagggcctcaaaggatatttgtatacccatgttggtaggagcatttttgag-----ctaaaccatgaaagcaacctatggtccatcaatggatgaatggataagctaaatgtggtatatctgtacaatgaaatatattccacc
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54763479 426 + 123690457 ccaataagcatatgaaaagatgttcaacatcactaatcactggggaaatgcaaatcaaaacaatgagataccacctcacacccattaagagggctactgccaaaagaacagaacagaacagaagtgttggagagggtgtggagaaactgggacccttgtgtactgttggtgaaaatgtaaaatgttacagccgctgtggaaaacagtatgacagttcctc-aaaaatttaaaaattggattaacttatgatccagcaattctatttctgtacccaaaaaaagctgaaagcagggcctcaaaggatatttgtatacccatgttggtagcagcattattgag-----ctaaaccatgaaagcaacccatggttcatcaatggatgaatggataagctaaatgtggtatatctgtacaatgaaatatattccacc
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79654722 429 - 134985053 ccaataagcacatgaaaagatgttcaatatcactaatcattggggaaatgcaaatcaaaacaatgagataccacctcacacccattaaaagggctactgccaaaagaacagaacagaacagaagtgctggaaagggtgtggagaaattgggacccttgtgtactgttggtgaaaatgtaaaatgttacagccgctgtggaaaacagtatgacagttcctc-aaaaagttaaaaataggattaacttatgagccagcaattctatttctgtacccaaaaaca-ccgaaagcagggccttaaaggatatttgtatacccatgttggtagcagcactgttgaggatagctaaaccatgaaagcaacccatggtccatcagtggatgaatggataagcaaaatgtggtatatctgtac-atgaaatatattccacc
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80753987 429 - 137757926 ccaataagcacatgaaaagatgttcaatatcactaatcattggggaaatgcaaatcaaaacaatgagataccacctcacacccattaaaagggctactgccaaaagaacagaacagaacagaagtgctggaaagggtgtggagaaattgggacccttgtgtactgttggtgaaaatgtaaaatgttacagccgctgtggaaaacagtatgacagttcctc-aaaaagttaaaaataggattaacttatgagccagcaattctatttctgtacccaaaaaca-ccgaaagcagggccttaaaggatatttgtatacccatgttggtagcagcactgttgaggatagctaaaccatgaaagcaacccatggtccatcagtggatgaatggataagcaaaatgtggtatatctgtac-atgaaatatattccacc
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78707104 429 - 132286798 ccaataagcacatgaaaagatgttcaatatcactaatcattggggaaatgcaaatcaaaacaatgagataccacctcacacccattaagaGGGCTACTGccaaaagaacagaacagaacagaagtgctggaaagggtgtggagaaattgggacccttgtgtactgttggtgaaaatgtaaaatgttacagccgctgtggaaaacagtatgacagttcctc-aaaaagttaaaaataggatTAACTTATGAGCCAGCAATTCTATTTCTGTACCCAAAAACA-CCGAAAGCAGGGCCTTAAAGgatatttgtatacccatgttgGTAGCAGCACTGTTGAGGATAGCTAAACCATGAAAGCAACCCAtggtccatcagtggatgaatggataagcaaaatgtagtatatctGTAC-ATGAAATATATTCCAcc
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74630604 429 - 128539186 ccaataagcacatgaaaagatgttcaatatcactaatcattggggaaatgcaaatcaaaacaatgagataccacctcacacccattaagagggctactgccaaaagaacagaacagaacagaagtgttggagagggtgtggagaaattgggacccttgtgtactgttggtgaaaatgtaaaatgttacagccgctgtggaaaacagtatgacagttcctc-aaaaagttaaaaataggattaacttatgagccagcaattctatttctgtacccaaaaaca-ctgaaagcaaggccttaaaggatatttgtatacccatgttggtagcagcactgttgaggatatctaaacgatgaaagcaacccatggtccatcagtggatgaatggataagcaaaatgtggtatatctgtac-atgaaatatattccacc
i chlSab2.chr11             C 0 C 0
e mm10.chr10                126856541 2499 + 130694993 I
e canFam3.chr10              67316064 235 -  69331447 I
e calJac3.chr9               77430317 990 - 124281992 I

a score=1358066.000000
s hg38.chr12_GL383550v2_alt    107621 445 +    169178 ttaaaagggaaggaaattctgatgtcggctacaatatagatgaatcttgagaacattatgtgaagtgaaataagccagtctctagcagacgagtactgtatgattccacttatatgaggtatttagagcagttcaaaattatagagtcagacagtagaatagcgggtgccagcagctgggga-aaagggaatatggggaattattgtttaatggatacagagtttcaattttacaagatgaaacatgttatggagatgaatgatggtgatgattgcacaacactatgaatgcatttaaaaatactgaactgtgtacttaaaaatagtcacgatgacaaa-ttttttgtttcatgtattttaccacaattTATCAAATGGGGAAACACTTTATAATCATTTGAAAGGATAGGAGTGCTCATAGGGGTGAAGTTTAGAAGCTACTAACT
s panTro4.chr12              31345076 445 + 134246214 ttaaaagggaaggaaattctgatgtcagctacaatatagatgaatcttgagaacattatgtgaagtgaaataagccagtctctagcagacgagtactgtatgattccacttatatgaggtatttagagtagttcaaaattatagagtcagacagtagaatagtgggtgccagcagctgggga-aaagggaatatggggaattattgtttaatggatacagagtttcaattttacaagatgaaacatgttatggagatgaatgatggtgatgattgcacaacactatgaatgcatttaaaaatactgaactgtgtacttaaaaatagtcacgatgacaaa-ttttttgtttcatgtattttaccacaattTATCAAATGGGGAAACACTTTATAATCATTTGAAAGGATAGGAGTGCTCATAGGGGTGAAGTTTAGAAGCTACTAACT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78543145 443 - 136387465 ttaaaagggaaggaaattctcatgtaggctacaatatagatgaatcttgagaacattatgtgaagtgaaataagccagtctctagcagacaagtactgtatgattccacttatatgaggtatttagagtagttcaaaattatagagtcagacagtagaatagtgggtgccagcagctgggga-aaaggaaatatggggaattattgtttagtggatacagagtttcaattttacaagatgaaacatgttatggagatgaatgatggtgatgattgc---acattatgaatgcatttaaaaatactgaactgtgtacttaaaaatagtcaggatgataaatttttttgtttcatgtattttaccacaattTATCAAATGGGGAAACACTTTATAATCATTTGAAAGGATAGGAGTGCTCATAGGGGTGAAGTTTAGAAGCTACTAACT
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54763905 445 + 123690457 ttaaaagggaaggaaattctgatgtaggctacaatatagatgaatcttgagaacattatgtgaagtgaaataagccagtctctagcagacaagtactgtatgattccacttatatgaggtatttagagtagttcaaaattatagagtcagacagtagaatagtgggtgccagcagctgggga-aaagggaatatggggaattattgtttaatggctacagagtttcaattttacaagatgaaacgtgttatggagatgaatgatggtaatgattgcacaacattatgaatgcatttaaaaatactgaactgtatacttaaaaatagtcaggatgacaaa-ttttttgtttcatgtattttaccacaattTTTCAAATGGGGAAACACTTTATAATCATTTGAAAGGATAGGAGTGCTCATAGGGGTGAAGTTTAGAAGCTACTAATT
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79655151 443 - 134985053 ttaaaagggaaggaaattctgatgtaggctacaacatagatgaatcttgagaacattatgtgaagtgaaat-agccagtctctagtagacaagtactgtatgattccacttatatgaggtatttagagtagttcaaaattatacagtcagacagtagaatagtgggtgccagcagctggaga-aaggggaatatggggaattattgtttaacgaatacagagtttcagttttacaagatgaaatgagttatggagatgaatgatgatgatgattgcacaacattatgaatgcatttaaaaatactgaactgtgtacttaaaaatagtcaagatcacaaa-ttttttgtttcatgtattttaccacaattT-TCAAATGGGGAAACATTTTATAATCATTTGAAAGGATAGGAGGACTCATAGGGGTGAAGTTTAGAAGCTACTAACT
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80754416 443 - 137757926 ttaaaagggaaggaaattctgatgtaggctacaacatagatgaatcttgagaacattatgtgaagtgaaat-agccagtctctagtagacaagtactgtatgattccacttatatgaggtatttagagtagttcaaaattatacagtcagacagtagaatagtgggtgccagcagctggaga-aaggggaatatggggaattattgtttaacgaatacagagtttcagttttacaagatgaaatgagttatggagatgaatgatgatgatgattgcacaacattatgaatgcatttaaaaatactgaactgtgtacttaaaaatagtcaggatcacaaa-ttttttgtttcatgtattttaccacaattT-TCAAATGGGGAAACATTTTATAATCATTTGAAAGGATAGGAGTACTCATAGGGGTGAAGTTTAGAAGCTACTAACT
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78707533 443 - 132286798 ttaaaagggaaggaaattctgatgtaggctacaacatagatgaatcttgagaacattatgtgaagtgaaat-agcCAATCTCTAGTAGACaagtactgtatgattccacttatatgaggtatttaGAGTAGTTCAAAATTATACAGTCAGACAGTAGAATAGTGGGTGCCAGCAGCTGGAGA-AAGGGGAATATGGGGAATTATTGTTTAACgaatacagagtttcagttttacaagatgaaatgAGTTATGGAgatgaatgatgatgatgattgcacaacattatgaatgcatttaaaaatactgaactGTGTACTTAAAAATAGTCAGGATgacaaa-ttttttgtttcatgtattttaccacaattt-tcaAATGGGGAAACATTTTATAATCATTTGAAAGGATAGGAGTACTCATAGGGGTGAAGTTTAGAAGCTACTAACT
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74631033 443 - 128539186 ctaaaagggaaggaaattctgatgtaggctacaacacagatgaatcttgagaacattatgtgaagtgaaat-agccagtctctagtagacaagtactgtatgattccacttatatgaggtatttagagtagttcaaaattatacagtcagacagtagaatagtgggtgccagcagctgggga-aagtggaatatggggaattattgtttaatgaatacagagtttcagttttacaagatgaaatgagttgtggagatgaatgatggtgatgattgcacaacattatgaatgcatttaaaaatactgaactgtgtacttaaaaatagtcaggatgacaaa-ttttttgtttcatgtattttatcacaattT-TCAAATGGGGAAACATTTTATAATCATTTGAAAGGATAGGAGTGCTCATAGGGGTGAAGTTTAGAAGCTACTAACT
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77431307 444 - 124281992 ttaaaaaggaaggaaatttcaatgtatgctacaatatggatgaatcttgagaacgttatgcggagtgaaataagccagtctctagctgacaagtactgtatgattccacttatatgaggtatttagagtagttcaaaattatagagtcagacagtagaatagtggttgccaccagctggggataaagggaatatggagaattattgtttaatggatacagagtttcaattttacgagatgaaaagagttatggagatgaacggtggtgatgattgcacaacattacg-atgcatttaaaaatactgaactgtgtacttaaaaatagtcaggatgacaaa-ttttttgtttcatgtattttaccacaattTTTTAAATGGGGGAA-ACTTCATAATCATTTGAAAGGATAGGAGTGCCCATAGGCATGAAGGTTAGAAGCGACTAACT
i calJac3.chr9              I 990 C 0
e mm10.chr10                126856541 2499 + 130694993 I
e canFam3.chr10              67316064 235 -  69331447 I

a score=358344.000000
s hg38.chr12_GL383550v2_alt    108066 103 +    169178 ACAACATAAAATACTAATAACAGAGGAAAAAGAAAATCATTAACAGCAGCATCTAACCAGATTTCAACCAATGGGGTTTCATAATTCGTTATGTTCAACTAAA
s panTro4.chr12              31345521 103 + 134246214 ACAACATAAAATACTAATAACAGAGGAAAAAGAAAATCATTAACAGCAGCATCTAACCAGATTTCAACCAATGGGGTTTCATAATTCGTTATGTTCAACTAAA
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78543588 103 - 136387465 TCAACATAAAACACTAATAACAGAGGAAAGAGAAAATCGTTAACAGCAGCATCTAACCAGATTTCAATCAATAGGGTTTCATAATTTATTATGTTCAACTAAA
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54764350 103 + 123690457 TCAACATAAAATACTAATAACAGAGGAAAGAGAAAATCGTTAACAGCAGCATCTAACCAGATTTCAACCAATGGGGTTTCATAATTCGTTATGTTCAACTAAA
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79655594 103 - 134985053 TCAACGTAAAATACTAACAACAGAGGAAAGAGAAAATCATTAACAGCAGCATCTAACCAGATTTCAATCAGTGGGGTTTCATAATTCATTATGTTCAACTAAA
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80754859 103 - 137757926 TCAACGTAAAATACTAACAACAGAGGAAAGAGAAAATCATTAACAGCAGCATCTAACCAGATTTCAATCAGTGGGGTTTCATAATTCATTATGTTCAACTAAA
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78707976 103 - 132286798 GCAACGTAAAATACtaacaacagaggaaagagaaaatcatTAACAGCAGCATCTAACCAGATTTCAATCAGTGGGGTTTCATAATTCATTATGTTCAACTAAA
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74631476 103 - 128539186 TCAACATAAAATACTAACAACAGAGGAAAGAGAAAATCATTAACAGCAGCATCTAACCAGATTTCAATCAGTGGGGTTTCATAATTCATTATGTTCAACTAAA
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77431751 101 - 124281992 TCAACATAAAACACTAACCACAGA-GAAAGAGGAAATTG-TAACAGCAGCATCTAACCAGATTTCCACCAACGGGGTTTCATAATTCGTTATGATTAACTAAA
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67316299 102 -  69331447 acaaaacaaaaTACTAGCCACAGAGGAGAGAGAGAAACA-TAACAGCAAAATCTACCCAGATTTCAACCAGTGAGGTTTCACAACTTATTATGATCAACCAGG
i canFam3.chr10             I 235 C 0
e mm10.chr10                126856541 2499 + 130694993 I

a score=3978633.000000
s hg38.chr12_GL383550v2_alt    108169 1058 +    169178  
s panTro4.chr12              31345624 1061 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78543691 1062 - 136387465  
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54764453 1057 + 123690457  
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79655697 1056 - 134985053  
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80754962 1056 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78708079 1059 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74631579 1055 - 128539186  
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77431852 1060 - 124281992  
i calJac3.chr9              C 0 C 0
s mm10.chr10                126859040 1077 + 130694993  
i mm10.chr10                I 2499 I 150
s canFam3.chr10              67316401 1060 -  69331447  
i canFam3.chr10             C 0 C 0

a score=269432.000000
s hg38.chr12_GL383550v2_alt    109227 78 +    169178 ATTCTTAGTCTCTGACATTTTTGGCAAATGGGTAGTAGAGTTTGTTTTTCAGTCTATGGGCATGAGAGCCAATGCCTG
s panTro4.chr12              31346685 74 + 134246214 ATTCTTAGTCTCTGACATTTTTGGCAAATGGGTAATAGA----GTTTTTCAGTCTATGGGCGTGAGAGCCAATGCCTG
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78544753 78 - 136387465 ATTCTTAGTCTCTGACATTTTTGGCAAATGGGTAGTAGAGTTTGTTTTTCAGTCTATGGGCATGAGAGCCAATGCCTG
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54765510 78 + 123690457 ATTCTTAGTCTCTGACATTTTTGGCGAATGGGTAGTAGAGTTTGTTTTTCAGCCTATGGGCCTGACAGCCAGTGCCTG
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79656753 78 - 134985053 ATTCTTAGTCTCTGACATTTTTGGCAAATGGATAGTAGAGTTTGTTTTTCAGTCTATGGGCATGAGAGCCAATGCCTG
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80756018 78 - 137757926 ATTCTTAGTCTCTGACATTTTTGGCAAATGGATAGTAGAGTTTGTTTTTCAGTCTATGGGCATGAGAGCCAATGCCTG
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78709138 78 - 132286798 ATTCTTAGTCTCTGACATTTTTGGCAAATGGATAGTAGAGTTTGTTTTTCAGTCTATGGGCATGAGAGCCAATGCCTA
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74632634 78 - 128539186 ATTCTTAGTCTCTGACATTTTTGGCAAATGGATAGTAGAGTTTGTTTTTCAGTCTATGGGCATGAGAACCAATGCCTG
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77432912 78 - 124281992 ATTCTTAGTCTCTGACATTTCTGGTGAACAGATAGTAGAGTTTGTTTTCCAGTCTATGGGCATGAGAGCAAATGCCTG
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67317461 78 -  69331447 TTAAGTAATCTCAGATACTTTTGGTGAATGGGCAATAGATTTTGTTTTTCAATCCATAGACATGAGGTCACACACCTG
i canFam3.chr10             C 0 C 0
e mm10.chr10                126860117 150 + 130694993 I

a score=475715.000000
s hg38.chr12_GL383550v2_alt    109305 144 +    169178 AACCACAAAGAGAAAACAGTAAA----------------TGTGTTAAATAATAAAGGTTGGAAGGTTATACACCAAACTTA--------ACACATGAAAAGATGAAAAGCTggcgatgaaataag---g--tgtttttctttctacttgatataattctatattagttgaa-tt
s panTro4.chr12              31346759 144 + 134246214 AACCACAAAGAGAAAACAGTAAA----------------TGTGTTAAATAATAAAGGTTGGAAGGTTATACACCAAACTTA--------ACACATGAAAAGATGAAGAGCTggcgatgaaataag---g--tgtttttctttctacttgatataattctatattagttgaa-tt
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78544831 145 - 136387465 AATCACAAAGAGAAAACAGTAAA----------------TGTGTTAAATAATAAAGGTTGGAAGGTTATACACCAAACTTA--------ACACATGGAAAGATGAAGAGCTGGCGATGAAATAAG---G--TGTTTTTCTTTCTACTTGATATAATTCTATATTAGTTGAATTT
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54765588 142 + 123690457 AACCACAAAGAGAAAACAGTAAA----------------TGTGTTAAATAATAAAGGTTGGAAGGTTATACACCAAACTTA--------ACACATGGAAAGATGAAGAGCTGGTGACGAAATAAG---G--TGTTTTTCTTTCTACTTGATATAATTC--TATTAGTTGAA-TT
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79656831 143 - 134985053 AACCACAAAGAGAAAACAGTAAA----------------TGTGTT-AACAATAAAGGTTCGAAGGTTATACACCAAACTTA--------ACACATGGGAAGATGAAGAGCTGGGGACAAAAtaag---g--tgtttttctttctacttgatataattctatattagttgaa-tt
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80756096 143 - 137757926 AACCACAAAGAGAAAACAGTAAA----------------TGTGTT-AACAATAAAGGTTCGAAGGTTATACACCAAACTTA--------ACACATGGGAAGATGAAGAGCTGGGGACAAAAtaag---g--tgtttttctttctacttgatataattctatattagttgaa-tt
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78709216 143 - 132286798 AACcacaaagagaaaacagtaaa----------------TGTGTT-AACAATAAAGGTTCGAAGGTTATACACCAAACTTA--------ACACATGGGAAGATGAAGAGCTGGGGACAAAATAAg---g--tgtttttctttctacttgATATAATTCTATATTAGTTGAA-TT
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74632712 143 - 128539186 AACCACAAAGAGAAAACAGTAAA----------------TGTGTT-AACAATAAAGGTTCGAAGGTTATACACCAAACTTA--------ACACATGGGAAGATGAAGAGCTGGGGACAAAATAAG---G--TGTTTTTCTTTCTACTTGATATAATTCTATATTAGTTAAA-TT
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77432990 138 - 124281992 AACCACAAAGAGAAAACAGTAAA----------------TGCGTTAAATAGTAAAGGTTGGAAGGTTATACACC-AACTTA--------ACACACAGGAAGATGAAGAACTGGGGACAAAATAAG---G--TGTTTTTCTTT---CTTGATGTAATTC--TATCTGTTAAA-TT
i calJac3.chr9              C 0 C 0
s mm10.chr10                126860267 158 + 130694993 AAGCATGAACACATACCAACAAAATCGGGGGGGGGGGTTAGTCTTTAAAAAAAAATCAATAAATTCTACACACTGAACCCA--------ACACGGGGAGGGAGGCA---CTGGAGAAAGTTCCAGTCAG--AATTTTCCCTTCTGACTCATGTAATTCTAGATT--TCTGA-GC
i mm10.chr10                I 150 C 0
s canFam3.chr10              67317539 154 -  69331447 AGCCATGAAGAGTAAACTATAAA----------------TGTGGCAAATAATAACAGCTGGAAGGCTACACACCAAACTTAATATTGCTATATGTGAGGAAGTGATGAACTGGGGAAAGAGTGGG---GAATTTTTTTCTTCTTACTTGATATAATTCTTCACTGTTTGGA-TT
i canFam3.chr10             C 0 I 129

a score=162973.000000
s hg38.chr12_GL383550v2_alt    109449  53 +    169178 ttttataataagcatgtttttatgtaaaacttctgaaatttt--------------------------------------------------atttttCA-AAG
s panTro4.chr12              31346903  53 + 134246214 ttttataataagcatgtttttatgtaaaacTTCTGAAATTTT--------------------------------------------------ATTTTTCA-AAG
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78544976  53 - 136387465 TTTTATAATAAGCATGTTTTTATGTAAAACTTCTGAAATTTT--------------------------------------------------ATTTTTTA-AAG
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54765730  53 + 123690457 TTTTATAATAAGCATGTTTTTATGTAAAACTTCTGAAATTTT--------------------------------------------------ATTTTTTA-AAG
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79656974  53 - 134985053 ttttataatgagcatg-ttttatgtaaaacttctgaaatttt--------------------------------------------------atttttttaaag
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80756239  53 - 137757926 ttttataatgagcatg-ttttatgtaaaacttctgaaatttt--------------------------------------------------atttttttaaag
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78709359  52 - 132286798 TTTTATAATGAGCATG-TTTTATGTAAaacttctgaaatttt--------------------------------------------------attttttt-aag
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74632855  52 - 128539186 TTTTATAATGAGCATG-TTTTATGTAAAACTTCTGAAATTTT--------------------------------------------------ATTTTTTA-AAG
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77433128  52 - 124281992 TTTTATAATAAGCCTGTTTTTATGTAAAACTTCTGAAATTTT--------------------------------------------------GTTTTTTT-AA-
i calJac3.chr9              C 0 C 0
s mm10.chr10                126860425  50 + 130694993 GACTGTAATAGTCATGTTTTTGTATATGATTTCTGAGATTAC--------------------------------------------------ATTTCCAG----
i mm10.chr10                C 0 C 0
s canFam3.chr10              67317822 103 -  69331447 TTTTACAAGAAGAATGCTTTTATGTGTAACTTCTGAATTtttgttttggtttggttttttgtttgtttgtttgtttgtttgtttACTTCTGAATTTTTTA-AAG
i canFam3.chr10             I 129 I 145

a score=1089093.000000
s hg38.chr12_GL383550v2_alt    109502 294 +    169178 AGTCATCTAAAATAATAAT-ATTATCTGCAACATACTTACCCATCTAGGTAATAATCCATGCTCTCTATTTGGTCACTTTGTTCAGTCATCCCACAGACTAGCTCCTTTGGGGCACCAGTCCCCAGAGCAGGCACTGCAGAGGCTACAAAGACAATCCTTGtaatagcaaacatttatggagtgct----atgtggcaggcactgcctcaagaactt-atcagagctatctcatttaatcctcacccaattatgtcag------------acccac---------tcctcaaatgaggaaacgaggcacagagcagttaag
s panTro4.chr12              31346956 294 + 134246214 AGTCATCTAAAATAATAAT-ATTATCTGCAACATACTTACCCATCTAGGTAATAATCCATGCTCTCTATTTGGTCACTTTGTTCAGTCATCCCACAGACTAGCTCCTTTGGGGCACCAGTCCCCAGAGCAGGCACTGCAGAGGCTACAAAGACAATCCTTGtaatagcaaacacttatggagtgct----atgtggcaggcactgcctcaagaactt-atcagagctatctcatttaatcctcacccaattatgtcag------------acccac---------tcctcaaatgaggaaacgaggcacagagcagttaag
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78545029 294 - 136387465 AGTCATTTAAAATAATAAT-ATTGTCTGCGACATACTTATCCATCTAGGTAATAATCCATGCTCTCTATTTGGTCACTTTGTTCAGTCATCCCACAGACTAGCTCCTTTGGGGCACCAGTCCCCAGACCAGGCACTGCAGAGGCTACAAAGACAATCCTTGtaatagcaaacatttatggagtgct----atgtggcaggcactgtctcaagaactt-atcagagctatctcatttaatcctcacccaattatgtcag------------acccac---------tcctcaaatgaggaaacgaggcacagagcggttaag
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54765783 294 + 123690457 AGTCATCTAAAATAATAAT-ATTATCTGCGACGTACTTACCCATCTAGGTAATAATCCATGCTCTCTATTTTGTCACTTTGTTCAGTCAGCCCACAGACTAGCTCCTTTGGGGCACCAGTCCCCAGACCAGGCACTGCAGAGGCTACAAAGACAATCCTTGCaatagcaaacatttatggagtgct----acgtggcaggcactgtgtcaagaactt-atcagagctagctcatttagtcctcatccaattatgtcag------------acccac---------tcctcaattgaggaaacgaggcactgagcagttaag
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79657027 294 - 134985053 aGTCATCTAAAATAACAAT-ATTATCTGGGACATACTTACCCATCTAGGTAATAATCTATGCTCTCCATTTGGTCACTTTGTTCAGTCATCCCACAGACTAGCTCCTTTGGGGCACTAGTCCCCAGACCAGGCACTGCAGAGGCTGCAAAGACAATCCTTGtaacagcaaacgtttatggagtgct----atgtggcaggtactgtctcaagaactt-atcagagctatcccatttaatcctcatccaattttgtcag------------acccac---------tcctcaaatgaggaaacaaggcacagagcagttaag
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80756292 294 - 137757926 aGTCATCTAAAATAACAAT-ATTATCTGGGACATACTTACCCATCTAGGTAATAATCTATGCTCTCCATTTGGTCACTTTGTTCAGTCATCCCACAGACTAGCTCCTTTGGGGCACTAGTCCCCAGACCAGGCACTGCAGAGGCTGCAAAGACAATCCTTGtaacagcaaacgtttatggagtgct----gtgtggcaggtactgtctcaagaactt-atcagagctatcccatttaatcctcatccaattttgtcag------------acccac---------tcctcaaatgaggaaacaacgcacagagcagttaag
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78709411 294 - 132286798 agtcatctaaaataacaat-attatctGGGACATACTTACCCATCTAGGTAATAATCTGTGCTCTCCATTTGGTCACTTTGTTCAGTCATCCCACAGACTAGCTCCTTTGGGGCACTAGTCCCCAGACCAGGCACTGCAGAGGCTGCAAAGACAATCCTTGTAACAGCAAACGTTTATGGAGTGCT----ATGTGGCAGGTACTGTCTCAAGAACTT-ATCAGAgctatcccatttaatcctcatccAATTTTGTCAG------------ACCCAC---------TCCTCAAATGAGGAAACAAGGCAAAGAGCAGTTAAG
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74632907 294 - 128539186 AGTCATCTAAAATAACAAT-ATTATCTGGGACATACTTACCCGTCTAGGTAATAATCTATGCTCTCCATTTGGTCACTTTGTTCAGTCATCCCACAGACTAGCTCCTTTGGCGCACTAGTCCCCAGACCAGGCACTGCAGAGGCTGCAAAGACAATCCTTGtaacagcaaacatttatggagtgct----atgtggcaggtactgtctcaagaactt-atcagagctatcccatttaatcctcatccaattttgtcag------------acccac---------tcctcaaatgaggaaacaaggcacagagcagttaag
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77433180 295 - 124281992 AGTCATCTAAAATAATATTAATTAACTGCAACACACTTACCCATCTAGGTAGTAATCCATCCTCTCTATTTGGTCACTTCATTCAGTCATCCCACAGACTGGCTCCTCTGGGGCACCAGCCCCCAGACCAGGCACTGCAGAGGCTGCAAAGACAATCCTTGtaatagcaaacatttacaaaacgct----atgtggcaggcactgtctcaagaactt-ctcggagctatctcatttaatcctcacccaattatgtcag------------acccac---------tcctcaaatgagaaaacaaggcacagtgagattaag
i calJac3.chr9              C 0 C 0
s mm10.chr10                126860475 254 + 130694993 -GTCCTTTGAA---------ACTACCTGAGATGTACGTACACAGCCCAATGATAAGCCATGTGGTCTGCTAAGGCACTTTGTCTATTCATCCAACAAACTAACTCCCTT-------------------------------------CAGGAATAATCCTTT--------Gacatttagagggcactgtccatgtgccaggcactggctcaagaacttcctcagaactatatcctttaactccctccctcttacaccat------------accaaccctgaccgttcttcatatgaggaggcaaagctcagagagggtcag
i mm10.chr10                C 0 C 0
s canFam3.chr10              67318070 298 -  69331447 GATCATCTGCAATAATATT-ATTATCTGTGGTCTACTTAGCCATCTAGGCAATAACCCATGTTCTCTGTTTGGTCACTTTGTTCAGTCATTCCGC--ACTAGTTCCCTTAGGGCACCAACCCCCAAGTCAGACACTACAGGAGCTTCAAAGACCATTCTTGCAATTACAGA----TGTGgagtcctggttacatgccaggaactgttccagaatttt-atcagaacta-----tttaatcttcacccaaatttgtcagtactaggattacacccat---------tcttca-atgaggaaacaaggcacagagagattaag
i canFam3.chr10             I 145 I 75

a score=925872.000000
s hg38.chr12_GL383550v2_alt    109796 305 +    169178 taaattgctcaagacc--tcagctgacaccgatggaacaagttgtttggcttcaagctgcatctttaatcagtatgctatTTTTCATCCCTGAAGGTGAAAACCCTTCCCAATCTCTGAAGGTTTACAGTCTAGTTGGAGAGAAATGTAGAAACCAATCACATATCATAGATGGTATGATAAAGGCACACACAAAGAAAAAAGAAGAAAGCTTGATTGAG----TGTGGG--TGGGAA-GGGTGAGGAGTGTCAAGGAACATTTCCAAGAGGAAGCCCCCAGCAAAGCCAAGAGCTGGTCTCCTCACAAGAGCT
s panTro4.chr12              31347250 305 + 134246214 taaattgctcaagacc--tcagctgacaccgatggaacaagttgtttggcttcaagctgcatctttaatcagtatgctatTTTTCATCCCTGAAGGTGAAAACCCTTCCCAATCTCTGAAGGTTTACAGTCTAGTTGGAGAGAAATGTAGAAACCAATCACATATCATAAATGGTATGATAAAGGCACACACAAAGAAAAAAGAAGAAAGCTTGATTGAG----TGTGGG--TGGGAA-GGGTGAGGAGTGTCAAGGAACATTTCCAAGAGGAAGCCCCCAGCAAAGCCAAGAGCTGGTCTCCTCACAAGAGCT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78545323 306 - 136387465 taaattgctcaagacc--tcagctgacaccaatggaacaagctgtttggcttcaagctgcacctttaatcagcaggctatTTTTCATCCCTAAAGGTGAAAACCCTTCCCAACCTCTGAAGGTTTACAGTCTAGTTGGAGAGAAATGTAGAAACCAATCACATATCATAGATGGTATGATAAAGGCACACACAAAGAAAAAAGAAGAAAGCTTGATTGAG----TGTGGG--TGGGAAGGGGTGAGGAGTGTCAAGGAACATTTCCAAGAGGAAGACCCCAGCAAAGCCAAGAGCTGGTCTCCTCACAAGAGCT
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54766077 305 + 123690457 taaattgctcaagacc--tcagctgacaccgatggaacaagttgtttggcttcaagctgcacctttaatcagtatgctatTTTTCATCCCTAAAGGTGAAAACCCTTCCCAACCTCTGAAGGTTTACAGTCTAGTTGGAGAGAAATGTAGAAACCAATCACATATCATAGATAGTATGATAAAGGCACACACAAAGAAAAAAGAAGAAAGCTTGATTGAG----TGTGGG--TGGGAA-GGGTGAGGAGTGTCAAGGAACATTTCCAAGAGGAAGCCCCGAGCAAAGCCAAGAGCTGGTCTCCTCACAAGAGCT
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79657321 300 - 134985053 taaattgctcaagacc--tcagctgacactgatggaacaggtcgtttggcttcaagctgcacctttaatcactatgctattttgCATCCCTAAGGGTGAAAACCCTTCCCAAACTCTGAGAGTTCACAGTCTAGTTGGAGAGAAATGTAGAAACCAATCACATATCATAGATGGTGTGATAAAGGTACAC--AAAGAAAA---AAGAAAGTTTGATTGAG----TGTGGG--TGGGAA-GGGTGAGGAGTGTCAAGGAACCTTTCCAAGAGGAAGCACCCAGCAAAGCCAAGAGCTGGTCTTCTCACAAGAGCT
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80756586 300 - 137757926 taaattgctcaagacc--tcagctgacactgatggaacaggtcgtttggcttcaagctgcacctttaatcactatgctattttgCATCCCTAAGGGTGAAAACCCTTCCCAAACTCTGAGAGTTTACAGTCTAGTTGGAGAGAAATGTAGAAACCAATCACATATCATAGATGGTGTGATAAAGGTACAC--AAAGAAAA---AAGAAAGTTTGATTGAG----TGTGGG--TGGGAA-GGGTGAGGAGTGTCAAGGAACCTTTCCAAGAGGAAGCACCCAGCAAAGCCAAGAGCTGGTCTTCTCACAAGAGCT
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78709705 302 - 132286798 TAAATTGCTCAAGACC--TCAGCTGACACTGATGGAACAGGTTGTTTGGCTTCAAGCTGCACCTTTAATCACTATGCTATTTTGCATCCCTAAGGGTGAAAACCCTTCCCAAACTCTGAGAGTTTACAGTCTAGTTGGAAAGAAATGTAGAAACCAATCACATATCATAGATGGTGTGATAAAggtacacaaaaagaaaa---aagaaagtttgattGAG----TGTGGG--TGGGAA-GGGTGAGGAGTGTCAAGGAACCTTTCCAAGAGGAAGCACCCAGCAAAGCCAAGAGCTGGTCTTCTCACAAGAGCT
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74633201 302 - 128539186 taaattgctcaagacc--tcagctgatactgatggaacaggttgtttggcttcaagctgcacctttaatcactatgctattttgCATCCCTAAGGGTGAAAACCCTTCCCAAACTCTGAGAGTTTACAGTCTAGTTGGAGAGAAATGTAGAAACCAATCACATATCATAGATGGTGTGATAAAGGTACACACAAAGAAAA---AAGAAAGTTTGATTGAG----TGTGGG--TGGGAA-GGGTGAGGAGTGTCAAGGAACCTTTCCAAGAGGAAGCACCCAGCAAAGCCAAGAGCTGGTCTTCTCACAAGAGCT
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77433475 289 - 124281992 taaattgctcaagaccattcagctgacatcgatggagcagattgttgggcttcaagctgcacctttaatcactgtgctattttgCCTCTCTAAAGGTGAAAACCACTCTCAACCTCTGAAGGTTTACAGTCTAGTCAGAAAGAAATGTAGAAAACAATCACATGTCATAGGTGGTATGATAAAGGTACACACAAAGAAAAAAGAAGAAAAC--AATTGAG----TGTGGT--TGGGAG-GGGTGAGG-------------CTTGCCAAGAGGAAGCCTCCAGCAAAGCCTAGAGCTGGT---CTCACAAGAGCT
i calJac3.chr9              C 0 C 0
s mm10.chr10                126860729 278 + 130694993 taaactccccaaaacccttcagctgacactgacagagc-tgccatttgGCTTCACAA-ACACCATCCATCACTGTGTGGCTTC------------------ACCCTCCCCAGCCTCCTCTGCTTTATCATCCATCTGGGAAG--ATGGCGTGACTGGTCAGAGCCC--------TGTGCTAAATGTAC-----AAGAGGGGATATGAGTGGTTGGAGGGGACCCTGGGGGCCTGGAGG-GGGTGGAGACTGGCAGAGAACATTTCCCAGAGAAAGCTTCCAGCACAGGCAGGTACAGGGTACCTGGTGAGTGTT
i mm10.chr10                C 0 I 815
e canFam3.chr10              67318368  75 -  69331447 I

a score=408313.000000
s hg38.chr12_GL383550v2_alt    110101 144 +    169178 GAGGGAGGGGAGGGTAATGAAcatctactccacacctgccactt-accaggtgcttggcgagtgtattagtctgttttcacgctgctaataaagacatacccaagactcagcaatctacaaaagaaagaagtttaatgtattcat
s panTro4.chr12              31347555 145 + 134246214 GAGGGAGGGGAGGGtaatgaacatctactccacacctgccacttaaccaggtgcttggcgagtgtattagtctgttttcacgctgctaataaagtcatacccaagactcagcaatctacaaaagaaaaaagtttaatgtattcat
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78545629 142 - 136387465 GAGGGAGGGGAAGGTAATGAACATCTACTCCACACCTGCCGCTT-ACCA-GTGCTTGGTGAGtgtattagtctgttttcacgctgctaataaagacatacccaagactcagcaatctac-aaagaaagaagtttaatgtattcat
i ponAbe2.chr12             C 0 I 411
s nomLeu3.chr11              54766382 144 + 123690457 GAGAGAGGGGAGGGTAATGAAcatctactccacacctgccactt-accaggtgcttggtgagtgtattagtctgttttcacgctgctgataaagacgtacccaagactgagcaatttacaaaagaaagaagtttaatgtattcat
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79657621 144 - 134985053 GAGGGAGGGGAGGGTAATGAAcatctactccacacctgccactt-accaggtgcttggtgagtgtattagtctgttttcattttgctaataaagacatacccaagactgagcaatctacaaaagaaagaagtttaatgtatgcat
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80756886 144 - 137757926 GAGGGAGGGGAGGGtaatgaacatctactccacacctgccactt-accaggtgcttggtgagtgtattagtctgttttcattttgctaataaagacatacccaagtctgagcaatctacaaaagaaagaagtttaatgtatgcat
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78710007 144 - 132286798 GAGGGAAGGGAGGGTAATGAACATCTACTCCACACCTGCCACTT-ACCAGGTGCTTGGTGAGTGTAttactctgttttcattttgctaataaagacatacccaagactgagcaatctacaaaagaaagaagtttaatgtaTGCAT
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74633503 144 - 128539186 GAGGGAGGGGAGGGtaatgaacatctactccacacctgccactt-accaggtgcttggtgagtgtattagtctgttttcattttgctaataaagacgtacccaagactgagcaatctacaaaagaaagaagtttaatgtatgcat
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77433764 122 - 124281992 GAGGGA-GGGAGGGTAATGAACATCTACTGCACACCTGCCACTT-ACCAGGTGCTTGGTGAGTGTATTAGTCCATTTT---------------------ACAgagactcagcaatctacaaaagaaagaagtttaattgattcat
i calJac3.chr9              C 0 C 0
e mm10.chr10                126861007 815 + 130694993 I
e canFam3.chr10              67318368  75 -  69331447 I

a score=73016.000000
s hg38.chr12_GL383550v2_alt    110245 30 +    169178 aggtccacgtggctggggaggcctcacaat
s panTro4.chr12              31347700 30 + 134246214 aggtccacgtggctggggaggcctcacaat
i panTro4.chr12             C 0 C 0
s nomLeu3.chr11              54766526 30 + 123690457 aggtccgcgtggctggggaggcctcacaat
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79657765 30 - 134985053 aggtccacgtggctggggagacctcacaat
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80757030 30 - 137757926 aggtccacgtggctggggagacctcacaat
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78710151 30 - 132286798 Aggtccacgtggctggggagacctcacaat
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74633647 30 - 128539186 aggtccacgtggctggggagacctcacaat
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77433886 29 - 124281992 agttccacgtggct-gggaggcctcacaat
i calJac3.chr9              C 0 C 0
e mm10.chr10                126861007 815 + 130694993 I
e canFam3.chr10              67318368 75 -  69331447 I
e ponAbe2.chr12              78545771 411 - 136387465 I

a score=1528964.000000
s hg38.chr12_GL383550v2_alt    110275 543 +    169178  
s panTro4.chr12              31347730 543 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78546182 544 - 136387465  
i ponAbe2.chr12             I 411 C 0
s nomLeu3.chr11              54766556 524 + 123690457  
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79657795 544 - 134985053  
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80757060 544 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78710181 544 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74633677 542 - 128539186  
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77433915 555 - 124281992  
i calJac3.chr9              C 0 C 0
e mm10.chr10                126861007 815 + 130694993 I
e canFam3.chr10              67318368  75 -  69331447 I

a score=696933.000000
s hg38.chr12_GL383550v2_alt    110818 314 +    169178 AAACATCCTGTAAAAggctgggcgcagtggcacacgcctgtaatcccagcactttgggaggccgaggcaggcagatcacgaggtcaggagatcgagaccatcctggctaacacagtgaaacccccgtctctactaaaaatacaaaaaattagccgggcgtggtagcaggcacctgtagtcctagctactcgagaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagccaaaatcgtgccgctgcattccagtctgggcgacagagtgagactccatctc---aaaaaacaaa-aaaaaaa
s panTro4.chr12              31348273 313 + 134246214 AAACATCCTGTAAAAggctgggcgcagtggcacacgcctgtaatcccagcactttgggaggccgaggcaggcagatcacgaggtcaggagatcgagaccatcctggctaacacagtgaaacccccgtctctactaaaaatacaaaaaattagccgggcgtggtagcaggcacctgtagtcctagctactcgagaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagccaaaagcgtgccgctgcattccagtctgggcgacagagtgagactccatctc---aaaaaac-aa-aacaaaa
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78546726 308 - 136387465 AAACATCCTGTAAAAagctgggcgcagtggctcacgcctgtaatcccagcactttgggaggccaaggcaggcagatcacgaggtcaggagatcgagaccatcctggctaacacagtgaaa-cctcgtctctactaaaaatacaaaaaattagccgggcgtggtagcaggcacctatagtaccagctactcaagaggctgaggcaggagaatggcgtgaatccaggaggcggagcttgcagcgagccaaaatcatgccgctgcattccagcctgggcgacagagtgagactccatctc---aaaaaac------aaaaa
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54767080 314 + 123690457 AAACATCCTGTAAAAggctgggcgcagtggctcatgcctgtaatcccagcactttgggaggccaaggcaagcagatcacgaggtcaggagatctagatcatcctggctaacacaatgaaa-cctcgtctctactaaaaatacaaaaaattagccaggcgtggtagcaggcacctgtagtcccagctactcgagaggctgaggcaggagaatggtgtgaacctgggaggcggagcttgcagtgagccaaaattgtgccactgcattccagcctgggcgacacagtgagactccatctc---aaaaaacaaacaaacaaa
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79658339 308 - 134985053 AAACATCCTGTAAAAggctgggcgcggtggctcacacctgtaa-cccagcacattgggaggctgaggcaggcagatcacaaggtcaggagatcaataccatcctggctaacacagtgaaa-cctcgtctctactaaaaatacaaaaaattagctgggcgtggtggtgggcacctgtagttccagctactcgggcggctgaggcaggagaatggcgtgaaccagggaggcagagcttgcagtgagccaagatcacgccactacactccagcctggacaacagagtgagactccatctc-----aaaa--aa-aaaaaaa
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80757604 313 - 137757926 AAACATCCTGTAAAAggctgggcgcggtggctcacacctgtaa-cccagcacattgggaggctgaggcaggcagatcacaaggtcaggagatcaataccatcctggctaacacagtgaaa-cctcgtctctactaaaaatacaaaaaattagctgggcgtggtggtgggcgcctgtagttccagctactcgggcagctgaggcaggagaatggcgtgaaccagggaggcagagcttgcagtgagccaagatcatgccactacactccagcctggacaacagagtgagactccatctcaaaaaaaaa--aa-aaaaaaa
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78710725 308 - 132286798 aaacatCCTgtaaaaggctgggcgcggtggct--cacctgtaa-cccagcacattgggaggctgaggcaggcagatcacaaggtcaggagatcaataccatcctggctaacacagtgaaa-cctcgtctctactaaaaatacaaaaaattagctgggcgtggtggtgggcgcctgtagttccagctactcgggcagctgaggcaggagaatggcatgaaccagggaggcagagcttgcagtgagccaagatcacgccactacactccagcctggacaacagagtgagactccatctc---aaaaaa--aa-aaaaaaa
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74634219 310 - 128539186 AAACATCCTGTAAAAggctgggcgtggtggctcacacctgtaa-cccagcacattgggaggctgaggcaggcagatcacaaggtcaggaggtcaataccatcctggctaacacagtgaaa-cctcatctctactaaaaatgcaaaaaattagctgggcgtggtggtgggtgcctgtagttccagctacttgggaggctgaggcaggagaatggcgtgaaccagggaggcagagcttgcagtgagccaagatcacgccactacactccagcctggacaacagagtgagactccatctc---aaaaaa--aa-aaaaaaa
i chlSab2.chr11             C 0 C 0
e mm10.chr10                126861007 815 + 130694993 I
e canFam3.chr10              67318368  75 -  69331447 I
e calJac3.chr9               77434470   0 - 124281992 C

a score=430082.000000
s hg38.chr12_GL383550v2_alt    111132 151 +    169178 aaaaTCCTGtaaaaacaaaatggtaattaataataataaaatagtaagttaaaaataatatacagtgagtctccattggttaaataaaataaaataataataacaaaatggtaataataaaaattaa-ttaatttaataataacaaataaGC
s panTro4.chr12              31348586 151 + 134246214 aaaaTCCTGtaaaaacaaaatggtaattaataataataaaatagtaagttaaaaataatatacagtgagtctccattggttaaataaaataaaataataataacaaaatggtaataataaaaattaa-ttaatttaataataacaaATAAAC
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78547034 148 - 136387465 aaaaTCCTGtaaaaacaaaatggtaattaataataataaaatagtaagttaaaaataatatacagtgagtctccattggttaaataaaataa---aataataacaaaatggtaataataaaaattaa-ttaatttaataataacaaATAAAC
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54767394 148 + 123690457 aaaaTCCTGtaaaaacaaaatggtaattaataataataaaatagtaagttaaaaataatatacagtgagtctccattggttaaataaaataa---aataataacaaaatggtaataataaaaattaa-ttaatttaataataacaaataaAC
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79658647 142 - 134985053 aaaaTCCTGtaaaaacaaaacagtaattaataataataaaatagtaagttaaaaataatatacagtgagtctccattggttaaataaaat-----aataataacaaaatggtaataataaa----aa-ttaatttaataataacaaATAAAC
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80757917 142 - 137757926 aaaaTCCTGtaaaaacaaaacagtaattaataataataaaatagtaagttaaaaataatatacagtgagtctccattggttaaataaaat-----aataataacaaaatggtaataataaa----aa-ttaatttaataataacaaataaAC
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78711033 142 - 132286798 aaaatcctgtaaaaacaaaacagtaattaataataataaaatagtaagttaaaaataatatacagtgagtctccattggttaaataaaat-----aataataacaaaatggtaataataaa----aa-ttaatttaataataacaaataaac
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74634529 142 - 128539186 aaaaTCCTGtaaaaacaaaacagtaattaataataataaaatagcaagttaaaaataatatacagtgagtctccattggttaaataaaat-----gataataacaaaatggtaataataaa----aa-ttaatttaataataacaaataaAC
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77434470 143 - 124281992 AAAATCCTGTAAAAACAAAACAGTAATTAATAATAATAAAATAGCAAGTTAAAAATAATATACAGTGAGTTTCTCATGGttaaata---------aataataacaaaatggtaataataaaaattaatttaatttaataataaaaaataaaC
i calJac3.chr9              C 0 C 0
e mm10.chr10                126861007 815 + 130694993 I
e canFam3.chr10              67318368  75 -  69331447 I

a score=3103484.000000
s hg38.chr12_GL383550v2_alt    111283 966 +    169178  
s panTro4.chr12              31348737 966 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78547182 966 - 136387465  
i ponAbe2.chr12             C 0 I 233
s nomLeu3.chr11              54767542 967 + 123690457  
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79658789 967 - 134985053  
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80758059 967 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78711175 967 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74634671 968 - 128539186  
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77434613 957 - 124281992  
i calJac3.chr9              C 0 C 0
s mm10.chr10                126861822 914 + 130694993  
i mm10.chr10                I 815 C 0
e canFam3.chr10              67318368  75 -  69331447 I

a score=1822056.000000
s hg38.chr12_GL383550v2_alt    112249 562 +    169178  
s panTro4.chr12              31349703 562 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78548381 562 - 136387465  
i ponAbe2.chr12             I 233 C 0
s nomLeu3.chr11              54768509 556 + 123690457  
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79659756 562 - 134985053  
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80759026 562 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78712142 562 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74635639 562 - 128539186  
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77435570 560 - 124281992  
i calJac3.chr9              C 0 C 0
s mm10.chr10                126862736 622 + 130694993  
i mm10.chr10                C 0 C 0
e canFam3.chr10              67318368  75 -  69331447 I

a score=1842869.000000
s hg38.chr12_GL383550v2_alt    112811 518 +    169178  
s panTro4.chr12              31350265 520 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78548943 520 - 136387465  
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54769065 514 + 123690457  
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79660318 518 - 134985053  
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80759588 518 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78712704 518 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74636201 512 - 128539186  
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77436130 520 - 124281992  
i calJac3.chr9              C 0 C 0
s mm10.chr10                126863358 683 + 130694993  
i mm10.chr10                C 0 I 557
s canFam3.chr10              67318443 511 -  69331447  
i canFam3.chr10             I 75 C 0

a score=464017.000000
s hg38.chr12_GL383550v2_alt    113329 138 +    169178 ----CTACTAGTAGTGCTGAAAGAGATAACAACCAGTAACTCTGGGGCTCAACTTCTTTTGTTTTGCATTCCCAATCTCTTAATGTAGGAAA---CACAGTTTAAATGATGAATCTGCCTCTTTCTTCCAGGCTCCCCAGTGTTA
s panTro4.chr12              31350785 138 + 134246214 ----CTACTAGTAGTGCTGAAAGAGATAACAACCAGTAACTCTGGGGCTCAACTTCCTTTGTTTTGCATTCCCAATCTCTTAATGTAGGAAG---CACAGTTTAAATGATGAATCTGCCTCTTTCTTTCAGGCCCCCCAGTGTTA
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78549463 138 - 136387465 ----CTACTAGTAGTGCTGAAAGAGATAACAACCAGTAACTCTGGGGCTCAGCTTCCCTTGTTTTGCATTCCCAATCTCTTAATGTAGGAAA---CACAGTTTAAATGATGAATCTGCCTCTTTCTTCCAGGCCTCCCAGTGTTA
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54769579 138 + 123690457 ----CTACTAGGAGTGCTGAACGAGATAACAACCAGTAACTCTGGGGCTCAACTTCCTTTGTTTTGCATTCCCAATCTCTTAATGTAGGAAA---CACAGTTTAAATGATGAATCTGCCTCTTTCTTCCAGGCCCCCCAGTCTTA
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79660836 137 - 134985053 ----TTACTAGTAGTACTGAAAGAGATAACAACCAATAACTCTGGGGCTCAACTTCCTTCGTTTTGCATTTTCAATCTCTTAATGTAGGAAA---CACAGTTTAAATGATACCTCTGCCTCTTTCTTCCAGGC-CCCCAGTGTTA
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80760106 137 - 137757926 ----TTACTAGTAGTACTGAAAGAGATAACAACCAATAACTCTGGGGCTCAACTTCCTTCGTTTTGCATTTTCAATCTCTTAATGTAGGAAA---CACAGTTTAAATGATACCTCTGCCTCTTTCTTCCAGGC-CCCCAGTGTTA
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78713222 137 - 132286798 ----TTACTAGTAGTGCTGAAAGAGATAACAACCAATAACTCTGGGGCTCAACTTCCTTCGTTTTGCATTTTCAATCTCTTAATGTAGGAAA---CACAGTTTAAATGATAACTCTGCCTCTTTCTTCCAGGC-CCCCAGtgtta
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74636713 137 - 128539186 ----TTACTAGTAGTGCTGAAAGAGATAACAACCAATAACTCTGGGGCTCAACTTCCTTCGTTTTGCATTTTCAATCTCTTAATGTAGGAAA---CCCAGTTTAAATGATAACTCTGCCTCTTTCTTCCAGGC-CCCCAGTGTTA
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77436650 138 - 124281992 ----TTACTAGCAGTGCTGAAAGAGAGGACAACCAATAACTCTGGGGCTCAACTTCCTTTGTTTTGCATTCCCAATCTCTTAATGTAGGAAA---CACAGTTTAAATGATGAATCTGCCTCTTTCTTCCAGGCCCTCCAGTGTTA
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67318954 141 -  69331447 TGACTTACTAGTGGTGCTGGAAGAGATTGCAGTCATTAACCCTCAGGTTCAATTCTTTTTGTTTTGCATCCTCAATTTCTTAATGTAGGGAATTTTAATGTTTATA-GATGAACTGATCTGTATCTTCCTGGC---ACAGTGTAC
i canFam3.chr10             C 0 C 0
e mm10.chr10                126864041 557 + 130694993 I

a score=3524081.000000
s hg38.chr12_GL383550v2_alt    113467 903 +    169178  
s panTro4.chr12              31350923 917 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78549601 915 - 136387465  
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54769717 916 + 123690457  
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79660973 912 - 134985053  
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80760243 912 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78713359 912 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74636850 912 - 128539186  
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77436788 904 - 124281992  
i calJac3.chr9              C 0 C 0
s mm10.chr10                126864598 880 + 130694993  
i mm10.chr10                I 557 I 540
s canFam3.chr10              67319095 932 -  69331447  
i canFam3.chr10             C 0 C 0

a score=90834.000000
s hg38.chr12_GL383550v2_alt    114370 30 +    169178 TGATAAGGTTTTAAAAGATTATTAG-AAAAA
s panTro4.chr12              31351840 30 + 134246214 TGATAAGGTTTTAAAAGATTATTAG-AAAAA
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78550516 31 - 136387465 TGATAGGGTTTTAAAAGATTATTAGAAAAAA
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54770633 30 + 123690457 TGATAAGGTTTTAAAAGATTATTAG-AAAAA
i nomLeu3.chr11             C 0 I 4922
s rheMac3.chr11              79661885 30 - 134985053 TGATGAGGTTTTAAAAGATTATCAG-AATAA
i rheMac3.chr11             C 0 I 2
s macFas5.chr11              80761155 30 - 137757926 TGATGAGGTTTTAAAAGATTATCAG-AATAA
i macFas5.chr11             C 0 I 2
s papAnu2.chr11              78714271 24 - 132286798 TGATAAGGTTT-----GATTATCAG-AA-AA
i papAnu2.chr11             C 0 I 2
s chlSab2.chr11              74637762 30 - 128539186 TGATAAGGTTTTAAAAGATTATCAG-AAAAA
i chlSab2.chr11             C 0 I 2
s calJac3.chr9               77437692 30 - 124281992 TGAGAAGGTTTTAAAAGATTATTAG-AAAAA
i calJac3.chr9              C 0 I 1
s canFam3.chr10              67320027 30 -  69331447 TGATAAGGCTTTAACAGATTCTTAG-AAAAG
i canFam3.chr10             C 0 C 0
e mm10.chr10                126865478 540 + 130694993 I

a score=140441.000000
s hg38.chr12_GL383550v2_alt    114400 42 +    169178 GGTGCCAGAACAGTGCAAAATATCATCACATCCCTAAAG-AAG
s panTro4.chr12              31351870 42 + 134246214 GGTGCCAGAACAGTGCAAAATATCATCACATCCCTAAAG-AAG
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78550547 42 - 136387465 GGTGCCAGAACAGTGCAAAATATCATCACATCCCTAAAG-AAG
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54775585 42 + 123690457 GGTGCCAGAACAGTGCAAAATATCATCACATCCCTAAAG-AAG
i nomLeu3.chr11             I 4922 C 0
s rheMac3.chr11              79661917 43 - 134985053 GGTGCCAGAACAGTGCAAAATATCATCACATCCCTAAAGAAAA
i rheMac3.chr11             I 2 C 0
s macFas5.chr11              80761187 43 - 137757926 GGTGCCAGAACAGTGCAAAATATCATCACATCCCTAAAGAAAA
i macFas5.chr11             I 2 C 0
s papAnu2.chr11              78714297 43 - 132286798 GGTGCCAGAACAGTGCAAAATATCATCACATccctaaagaaaa
i papAnu2.chr11             I 2 C 0
s chlSab2.chr11              74637794 43 - 128539186 GGTGCCAGAATAGTGCAAAATATCATCACATCCCTAAAGAAAA
i chlSab2.chr11             I 2 C 0
s calJac3.chr9               77437723 43 - 124281992 GATGCCAGAACAGTGCAGAATATCATCACATCTCTAAAAAAAG
i calJac3.chr9              I 1 C 0
s canFam3.chr10              67320057 39 -  69331447 GGTGCCAGACTCAGGTGAAAT---ACCACATCTCTAGAG-AAG
i canFam3.chr10             C 0 C 0
e mm10.chr10                126865478 540 + 130694993 I

a score=465561.000000
s hg38.chr12_GL383550v2_alt    114442 120 +    169178 AAAGGCTAGAGAT--CTCTGGCATAGTAGTAACTTGCCAGCCTTCAAAATTACTGAAAAACAACTGAAATT-TTT-AGTCTATGAACTTCAAATCCTTTGACCAATCCCTTGATATAGATATCC
s panTro4.chr12              31351912 120 + 134246214 AAAGGCTAGAGAT--CTCTGGCATAGTAGTAACTTGCCAGCCTTCAAAATTACTAAAAAACAACTGAAATT-TTT-AGTCTATGAAGTTCAAATCCTTTGACTAATCCCTTGATACAGATATCC
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78550589 120 - 136387465 AAAGGCTAGAGAT--CTCTGGCATAGTAGTAACTTTCCAGCCTTCAAAATTACTGAAAAACAACTGAAATT-TTT-AGTCTATGAACTTCAAATCCTTTGACCAAGCCCTTGATATAGATATCC
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54775627 121 + 123690457 AAAGGCTAGAGAT--CTCTGGCATAGTAGTAACTTGCCAGCCTTCAAAATTACTGAAAAACAACTGAAATT-TTTCAGTCTATGAACTTCAAATCCTTTGACCAATCCCTTGATATAGATATCC
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79661960 120 - 134985053 AAAGGCTAGAGAT--CTCTGGCATAGTGGTAACTTACCAGCCTTCAAAATTACTGAAAAACAACTGAAATT-TTT-AGTCTATGAATTTCAAATCCTTTGACCAATCCCCTGATATAGATATCT
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80761230 120 - 137757926 AAAGGCTAGAGAT--CTCTGGCATAGTGGTAACTTACCAGCCTTCAAAATTACTGAAAAACAACTGAAATT-TTT-AGTCTATGAATTTCAAATCCTTTGACCAATCCCCTGATATAGATATCT
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78714340 120 - 132286798 aaaggctagaGAT--CTCTGGCATAGTGGTAACTTGCCAGCCTTCAAAATTACTGAAAAACAACTGAAATC-TTT-AGTCTATGAATTTCAAATCCTTTGACCAATCCCCTGATATAGATATCT
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74637837 119 - 128539186 AAAGGCTAGAGAT--CTCTGGCATAGTGGTAACTTGCCAGCCTTCAAAATTACTGAAAAACAACTGAAATT-TTT-ATTCTATGAATTTCAAAT-CTTTGACCAATCCCCTGATATAGATGTCT
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77437766 120 - 124281992 AAAGTCTAGAGAT--CTCTGGAATAGTAGTAACTTGCCAGCCTTCAAAATTACTGAAACACAACTGAAATT-TTT-AGTCTATGAACTTCAAACCCTTCGACCAATCCCCTGATATAGATATCC
i calJac3.chr9              C 0 C 0
s mm10.chr10                126866018 120 + 130694993 AAAGAGTAGAGAC--TTCCGGC-TAGCCGTAACTTGCAAGCCAACAGTATTACTATAAAATGCCTACAATTGTCT-ATTCTTTAAACTCAAAATCCATTGACCAATCTTCTGACAAGAATGTCC
i mm10.chr10                I 540 I 180
s canFam3.chr10              67320096 123 -  69331447 AAACACTATGGATTACTCTGGCTTAGTTAGAGCTTCCCAGCCACCGAAATTACTGAAAAGCACCTGCAGTT-CTTCATTCTTCAAACTCCAAATCCTTTGACGGATCCCCTGATACAGATATCC
i canFam3.chr10             C 0 C 0

a score=13361.000000
s hg38.chr12_GL383550v2_alt    114562 4 +    169178 ACAA
s panTro4.chr12              31352032 4 + 134246214 ACAA
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78550709 4 - 136387465 ACAA
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54775748 4 + 123690457 ACAA
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79662080 4 - 134985053 ACAA
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80761350 4 - 137757926 ACAA
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78714460 4 - 132286798 ACAA
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74637956 4 - 128539186 ACAA
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77437886 4 - 124281992 ACAT
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67320219 4 -  69331447 ACAT
i canFam3.chr10             C 0 C 0
e mm10.chr10                126866138 180 + 130694993 I

a score=304407.000000
s hg38.chr12_GL383550v2_alt    114566  78 +    169178 CCTTCATTTGCTTTTGTTTATCTAACAAATGATATAAAGATGTGATGTGCTGA-TGAGATGAAATGGAA----------------TG----------------TGTGTGTG
s panTro4.chr12              31352036  78 + 134246214 CCTTCATTTGCTTTTGTTTATCTAACAAATGACATAAAGATGTGATGTGCTGA-TGAGATGAAATGGAA----------------TG----------------TGTGTGTG
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78550713  78 - 136387465 CCTTCATTTGCTTTCGTTTATCTAACAAATGACATAAAGATGTGATGCACTGA-TGAGATGAAATGGAA----------------TA----------------TGTGTGTG
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54775752  78 + 123690457 CCTTCATTTGCTTTCGTTTATCTAACAAATGACATAAAGATGTGATGCGCTGA-TGAGATGAAATGGAA----------------TG----------------TGTGTGTG
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79662084  94 - 134985053 CCTTCATTTGCTTTTGTTTATCCAACAAATGACATAAAGATGTGATGCTCTGA-TGAGATGAAATTGAA----------------TGTGTGTGTGCACACACCTGTGTGTG
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80761354  94 - 137757926 CCTTCATTTGCTTTTGTTTATCCAACAAATGACATAAAGATGTGATGCTCTGA-TGAGATGAAATTGAA----------------TGTGTGTGTGCACACACCTGTGTGTG
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78714464  94 - 132286798 CcttcatttgcttttgtttatccAACAAATGACATAAAGATGTGATGCTCTGA-TGAGATGAaattgaa----------------tgtgtgtgtgcacacacctgtgtgtg
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74637960 110 - 128539186 CCTTCATTTGCTTTTGTTTATCCAACAAATGACATAAAGATGTGATGCTCTGA-TGAGATGAAATTGAATGTATGTGTACACACCTGTGTGTGCGCACACACCTGTGTGTG
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77437890  78 - 124281992 CCTTCATTTGCTTTTGTTTCTCTAACAAATGACATTAAGATGTGATGCACTGA-TGAGATGAAATTGAA----------------TG----------------TGTGTGTG
i calJac3.chr9              C 0 I 8
s mm10.chr10                126866318  76 + 130694993 CCTTAATTTCCTTC--TTTGTCTGACAAACGGCACAAGGACAAGATGCATTGA-TACAATGAAATtgtg----------------tg----------------tgtgtgtg
i mm10.chr10                I 180 I 53
s canFam3.chr10              67320223  79 -  69331447 CCTTCATTTGCTTTCGTTCGTCTAACAAATGACATGAAGATATGATTCACTGATTGAGGTGAAATTGAG----------------TG----------------TGTGTGTG
i canFam3.chr10             C 0 C 0

a score=451523.000000
s hg38.chr12_GL383550v2_alt    114644 150 +    169178 CATTTGAA--TGTGTGT-------------------------GAAAAGGAAGACACCTGTTTTCCTAGGATGTGTCAAAGATGTACGATTCTTAATGACTTCTATCTGGGATTTACTTGTATTCAAATGTTTAAGTTTTTCATCCTTCCAAATATCTAAGCCATACTAAATTAATGG
s panTro4.chr12              31352114 150 + 134246214 CATTTGAA--TGTGTGT-------------------------GAAAAGGAAGACACCCGTTTTCCTAGGATGTGTCAAAGATGTACGATTCTTAATGACTTCTATCTGGGATTTACTTGTATTCAAATGTTTAAGTTTTTCATCCTTCCAAATATCTAAGCCATACTAAATTAATGG
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78550791 150 - 136387465 CATTTGAA--TGTGTGT-------------------------GAAAAGGAAGACACCTGTTTTCCTAGGATGTGTCAAAGATGTACAATTCTTAATGACTTCTATCTGGGATTTACTTGTATTCAAATGTTTAAGTTTTTCATCCTTCCAAACATCTAAGCCATACTAACTTAATGG
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54775830 150 + 123690457 CATTTGAA--TGTGTGT-------------------------GAAAAGGAAGACACCTGTTTTCCTAGGATGTGTCAAAGATGTACAATTCTTAATGACTTCTATCTGGGATTTACTTGTATTCAAATGTTTAAATTTTTCATCCTTCCAAACATCTAAGCCATACTAAATTAATGG
i nomLeu3.chr11             C 0 I 300
s rheMac3.chr11              79662178 149 - 134985053 CATTTGAA--TGTGTGT-------------------------GAAAAGGAAGACACCTATTTTCC-AGGGTGTGTCAAAGATGTACTGTTCTTAATGACTTCTATCTGGGATTTACTTGTATTCAAATGTTTAAGTTTTTCTTCCTTCCAAACATCTAAGCCATACTAAATTAATGG
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80761448 149 - 137757926 CATTTGAA--TGTGTGT-------------------------GAAAAGGAAGACACCTATTTTCC-AGGGTGTGTCAAAGATGTACTGTTCTTAATGACTTCTATCTGGGATTTACTTGTATTCAAATGTTTAAGTTTTTCTTCCTTCCAAACATCTAAGCCATACTAAATTAATGG
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78714558 149 - 132286798 catttgaa--tgtgtgt-------------------------gAAAAGGAAGACACCTATTTTCC-AGGGTGTGTCAAAGATGTACTGTTCTTAATGACTTCTATCTGGGATTTACTTGTATTCAAATGTTtaagtttttcttccttccaaacATCTAAGCCATACTAAATTAATGG
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74638070 149 - 128539186 CATTTGAA--TGTGTGT-------------------------GAAAAGGAAGACACCTATTTTCC-AGGGTGTGTCAAAGATGTACAGTTCTTAATGACTTCTATCTGGGATTTACTTGTATTCAAATGTTTAAGTTTTTCTTCCTTCCAAACATCTAAGCCATACTAAATTAATGG
i chlSab2.chr11             C 0 C 0
s mm10.chr10                126866447 146 + 130694993 TATGTGCA--TGTGTGTTTATGTGCATTTATGTGCATCTGTGTAAAAGGACAAAAGCCAGCAACCTAGGGCGTG-------------AGTCTCAATGATGACTCTTT---ATTCA-----AATCCAGTGTTTGAGTTCCCCCCTCTTCA--------CAGCGACACTGGATTAATTA
i mm10.chr10                I 53 C 0
s canFam3.chr10              67320302 151 -  69331447 TGTGTGCACTTGTGTGT-------------------------GAAAAGGAAAACATCTGTTTTCCCAGGGTGTGTCAAAGATGTATGACTCTTAATGACTTCTATCTAGGATTTACTTATAATCAAATGTTGAAATTTCTCAT-CTTCCGAGCATCTGAGCCATACTAAATTAATGG
i canFam3.chr10             C 0 C 0
e calJac3.chr9               77437968   8 - 124281992 I

a score=195176.000000
s hg38.chr12_GL383550v2_alt    114794 53 +    169178 AAGAAAGTGGTAATTGTTTACTAGGGGAACAAAACAGAATGTCACATTAAGAA
s panTro4.chr12              31352264 53 + 134246214 AAGAAAGTTGTAATTGTTTGCTAGGGGAACAAAACAGAATGTCACATTAAGAA
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78550941 53 - 136387465 AAGAAAGTGGTAATTGTTTACTAGGGGAACAAAACAGAATGTCACATTAAGAA
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54776280 53 + 123690457 aagaaaGTGGTAATTGTTTACTAGGGGAACAAAACAGAATGTCACATTAAGAA
i nomLeu3.chr11             I 300 C 0
s rheMac3.chr11              79662327 53 - 134985053 AAGAAAGTGGTAATTGTTTACTAAGGGAACAAAACCGAATGTCACATTAAGAA
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80761597 53 - 137757926 AAGAAAGTGGTAATTGTTTACTAAGGGAACAAAACAGAATGTCACATTAAGAA
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78714707 53 - 132286798 AAGAAAGTGGTAATTGTTTACTAAGGGAACAAAACAGAATGTCACATTAAGAA
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74638219 53 - 128539186 AAGAAAGTGGTAATTGTTTACTAAGGGAACAAAACAGAATGGCACATTAAGAA
i chlSab2.chr11             C 0 C 0
s mm10.chr10                126866593 53 + 130694993 AAGAAAATACTAATTGTTCAATAGGAGAGCAAATCAGAAAGCCACATTAAGAA
i mm10.chr10                C 0 I 475
s canFam3.chr10              67320453 53 -  69331447 AAGAAAAAGGTAATTGTTCACTAGGGGAACAAAACAGAATGCCACATTAAGAA
i canFam3.chr10             C 0 C 0
e calJac3.chr9               77437968  8 - 124281992 I

a score=644434.000000
s hg38.chr12_GL383550v2_alt    114847 208 +    169178 ATCATTGGAAACCCTGTTATCCATGACCACCATCCTACGCTAAAAATTAAAGAAAGAAGAGCACTGGAGTTAAAGTTACATTCCCACTCAAACCAAAGACATTTTTGCCTCTTCATATAAACTGTAAACTC--------CTCTCTCTCTCTAACAGGGTTTGTGTCATATCTCTGGATTCTATCCCAATGCCCTACAAATTGAAGGTACCAAATAC
s panTro4.chr12              31352317 208 + 134246214 ATCATTGGAAACCCTGTTATCCATGACCACCATCCTACGCTAAAAATTAAAGAAAGAAGAGCACTGGAGTTAAAGTTACATTCCCACTCAAACCAAAGACATTTTTGCCTTTTCATATAAACTGTAAACTC--------CTCTCTCTCTCTAACAGGGTTTGTGTCATATCTCTGGATTCTATCCCAATGCCCTACAAATTGAAGGTACCAAATAC
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78550994 208 - 136387465 ATCATTGGAAACCCTGTTATCCATGACCACCATCCTACTCTAAAAATTAAAGAGAGAAGAGCACTGCAGTTAAAGTTACATTCCCACTCAAACCAAAGACATTTTTGCCTCTTCATATAAACTGTAAACTC--------CTCTCTCTCTCTAACAGGGTTTGTGTCATATCTCTGGATTCTATCCCAATGCCCTACAAATTGAAGGTACCAAATAC
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54776333 216 + 123690457 ATCATTGGAAACCCTGTTATCCATGACCACCATCCTACTCTAAAAATTAAAGAAAGAAGAGCACTGGAGTTAATGTTACATTCCCACTCAAACCAAAGACATTTTTGCCTCTTCATATAAACTGTAAActcctctctctctctctctctctAACAGGGTGTGTGTCATATCTCTGGATTCTATCCCAATGCCCTACAAATTGAAGGTACCAAATAC
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79662380 206 - 134985053 ATCATTGGAAACCCTGTTATCCATAACCACCATCCTACTCTAAAAATTAAAGAAAGAAGAGCACTGGAGTTAAAGTTACATTCCCACTCAAACCAAAGACATTTTTGCCTCTTCATATAAACTGTAAACTC----------CTCTCTCTCTAACAGGGTTTACGTCATATGTCTGGATTCTATCCCAATGCCCTACAAATTGAAGGTACCAAATAC
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80761650 210 - 137757926 ATCATTGGAAACCCTGTTATCCATAACCACCATCCTACTCTAAAAATTAAAGAAAGAAGAGCACTGGAGTTAAAGTTACATTCCCACTCAAACCAAAGACATTTTTGCCTCTTCATATAAACTGTAAACTC------CTCTCTCTCTCTCTAACAGGGTTTACGTCATATGTCTGGATTCTATCCCAATGCCCTACAAATTGAAGGTACCAAATAC
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78714760 212 - 132286798 ATCATTGGAAACCCTGTTATCCATAACCACCATCCTactctaaaaattaaagaaagaagagcaCTGGAGTTAAAGTTACATTCCCACTCAAACCAAAGACATTTTTGCCTCTTCATATAAACTGtaaactc----ctctctctctctctctaacagGGTTTATGTCATATGTCTGGATTCTATCCCAATGCCCTACAAATTGAAGGTACCAaatac
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74638272 208 - 128539186 ATCATTGGAAACCCTGTTATCCATAATCACCATCCTACTCTAAAAATTAAAGAAAGAAGAGCACTGGAGTTAAAGTTACATTCCCACTCAAACCAAAGACATTTTTGCCTCTTCATATAAAGTGTAAACTC--------CTCTCTCTCTCTAACAGGGTTTATGTCATATGTCTGGATTCTATCCCAATGCCCTACAAATTGAAGGTACCAAATAC
i chlSab2.chr11             C 0 C 0
s mm10.chr10                126867121 203 + 130694993 ATCAGTAGAAACA--GTGGTCTGTTGTCACTCTCCTATTTTGAAAAATGCTGAAACAATACCACAGGAACTAAAACCATGCTCCCATTCAAACCTAAGGCAGGTTTTCCTCCTCTTTTAAACTGAAAATCC----------CTCTCTCTGAAGTAGAACCTATCTCACATCTCTGGGTCCTATCGTAATG-CCTGTAAACTCGAGGGGATGAAAAC
i mm10.chr10                I 475 C 0
s canFam3.chr10              67320506 198 -  69331447 CTCCTTGGGAACTCTGTTATCCGCTAACACCACCCTACCCTAAAAATTGGAAGAATGAGATCACAGGAATTAAAGTTACATCCCCATCCAAACTAACAGCATTTTTACTCCCTAAC-TGAATTGTAGAGTC--------------TTCTATGATAAGGTCTGTGGCATACCTCTGGATCCTAACTCAATGCCCTACAGAC---AGGAGCTGAATAC
i canFam3.chr10             C 0 C 0
e calJac3.chr9               77437968   8 - 124281992 I

a score=25492.000000
s hg38.chr12_GL383550v2_alt    115055 9 +    169178 CTATTTTCt
s panTro4.chr12              31352525 9 + 134246214 CTATTTTCt
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78551202 9 - 136387465 CTATTTTCt
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54776549 9 + 123690457 CTATTTtct
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79662586 9 - 134985053 CTATTTTCt
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80761860 9 - 137757926 CTATTTTCt
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78714972 9 - 132286798 ctattttct
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74638480 9 - 128539186 CTATTTTCt
i chlSab2.chr11             C 0 C 0
s mm10.chr10                126867324 9 + 130694993 ATGTCCTCT
i mm10.chr10                C 0 I 2081
e canFam3.chr10              67320704 0 -  69331447 C
e calJac3.chr9               77437968 8 - 124281992 I

a score=880029.000000
s hg38.chr12_GL383550v2_alt    115064 376 +    169178 ttttt-ttattattatactttaagttctgggatatatgtgcagactgtgcaggcttgctacatgggtatacatgtgccatggtggtttgctgcacccatcaacccatcatctaggttttaagccctgcatgcattaggtatttgtcctaatgctctccctccccttgcccccacgcccaaacaggccccggtgtgtgatgttcccctacttgtgtccatgtgttctcagtgttcaaatcacacttatgagtgagaacatacagtgtttagttttccattcttgtgttagtttgctgagaatgatggtttccagtttcattcatgtccctgcaaaggacatgggctcattcttttttatggctgcatagtattccatc
s panTro4.chr12              31352534 376 + 134246214 ttttt-ttattattatactttaagttctgggatatatgtgcagactgtgcaggcttgctacatgggtatacatgtgccatggtggtttgctgcacccatcaacccatcatctaggttttaagccctgcatgcattaggtatttgtcctaatgcactccctccccttgcccccatgcccaaacaggccccggtgtgtgatgttcccctacctgtgtccatgtgttctcagtgttcaaatcacacttatgagtgagaacaaacagtgtttagttttccattattgtgttagtttgctgagaatgatggtttccagtttcattcatgtccctgcaaaggacatgagctcattcttttttatggctgcatagtattccatc
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78551211 376 - 136387465 ttttt-ttattattatactttaagttctgggatatatgtgcagaatgtgcaggcttgttacatgggtatacatgtgccatggtggtttgctgcacccatcaacccatcatctagattttaagccccgcatgcattaggtatttgtcctaatgctctccctccccttgcccccatgcccaaacaggccctggtgtgtgatgttcccctacctatgtccatgtgttctcattgttcaaattacacttatgagtgagaacatgcagtggttagttttccgttcttgtgttagtttgctgagaatgatggtttccagtttcatccatgtccctgcaaaggacatgaactcattcttttttatggctgcatagtattccatc
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54776558 376 + 123690457 ttttt-ttattattatactttaagttctgggatatatgtgcagaatgggcagacttgttacatgggtatacatgtgccatggtggtttgctgcacccatcaacccgtcatctaggttttaagccccgtatgcattaggtatttgtcctaatgctctccctccccttgcccccatgcccaaacaggccccggtgtgtgatgttcccctacctgtgtccatgtgttctccttgttcaaatcacatttatgagtgagaacatgcagtgtttagttttccattcttgtgtttgtttgctgagaatgatggtctccagtttcatccatgtccctgcaaaggacatgaactcattcttttttatagctccatagtattctatc
i nomLeu3.chr11             C 0 I 381
s rheMac3.chr11              79662595 376 - 134985053 tttttattattattatacgttaagttctcagatacatgtgcacaatgtgcaggtttgttacatagatatacatgtgccatagtggtttgctgcacccattaacacatcatctaagttttaagcccagcatgcattaggtacttgtcctaatgctctccctcctcttgcccccaagcccaaatagttcccagtgtgtgatgttccccttcctgtgtccatgtgttctcattgtgcaaatcacac-tgtgagtgagaacatgcagtgtttagttttccattcttatgttactttgctgagaatgatagtttccagtttcatccatgtccctgcaaaggacatgaactcactcttttttatggctgcatagtattccatg
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80761869 376 - 137757926 tttttattattattatacgttaagttctcagatacgtgtgcacaatgtgcaggtttgttacatagatatacatgtgccatagtggtttgctgcacccattaacccatcatctaagttttaagcccagcatgcattaggtacttgtcctaatgctctccctcctcttgcccccaagcccaaacagttcccagtgtgtgatgttccccttcctgtgtccatgtgttctcattgtgcaaatcacac-tgtgagtgagaacatgcagtgtttagttttccattcttatgttagtttgctgagaatgatggtttccagtttcatccatgtccctgcaaaggacatgaactcattcttttttatggctgcatagtattccatg
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78714981 377 - 132286798 tttttattattattatacgttaagttctcagatacatgtgcacaatgtgcaggtttgttacatagatatacatgtgccatagtggtttgctgcacccattaacccatcatctaagttttaagcccagcatgcattaggtacttgtcctaatgctctccctcctcttgcccccaaGCCCAAACAgtcccgggtgtgtgatgttccccttcctgtgtccatgtgttctcattgcgcAAATcacacttgtgagtgagaacatgcagtgtttagttttccattcttatgttagtttgctgagaatgatggtttccagtttcatccatgtccctgcaaaggacatgaactcattcttttttatggctgcatagtattccatg
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74638489 377 - 128539186 tttttattattattatacgttaagttctcagatacatgtgcacaatgtgcaggtttgttacatagatatacatgtgccatagtggtttgctgcacccattaacccatcatctaagttttaagcccggcatgcattaggtacttgtcctaatgctctccctcctcttgcccccaagcccaaacagtccccagtgtgtgatgttccccttcctgtgtccatgtgttctcattgtgcaaatcacacttgtgagtgagaacatgcagtgtttagttttccattcttatgttagcttgctgagaatgatggtttccagtttcatccatgtccctgcaaaggacatgaactcattcttttttatggctgcatagtattccatg
i chlSab2.chr11             C 0 C 0
e mm10.chr10                126867333 2081 + 130694993 I
e canFam3.chr10              67320704   0 -  69331447 C
e calJac3.chr9               77437968   8 - 124281992 I

a score=478076.000000
s hg38.chr12_GL383550v2_alt    115440 195 +    169178 atgtatatgtgccacattttctttatccagtctataattgatgggcattcgggttggttccaagtctttgctattgtgaatagtgccacaataaacatacatgtgcatgtgtctttatggtagaatgatttataatcctttgggtatatacccagtaatggaattgctgggaaaaatggtatttctgtttctaga
s panTro4.chr12              31352910 195 + 134246214 gtgtatatgtgccacattttctttatccagtctataattgatgggcattcgggttggttccaagtctttgctattgtgaatagtgccacagtaaacatacatgtgcatgtgtctttatagtagaatgatttataatcctttgggtatatacccagtaatggaattgctgggaaaaatggtatttctgtttctaga
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78551587 195 - 136387465 atgtatatgtgccacattttgtttatccattctataattgatgggcattcgggttggttccaagtctttgctattgtgaatagtgctgcaataaacatacatgtgcatgtgtctttatagtagaatgatttataatcctttgggtatatacccagtaatgagattgctgggtgaaatggtatttctgtttctaga
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54777315 195 + 123690457 atatatatgtgccacattttctttatccagtctataattgatgggtattctggttggttccaagtctttgctattgtgaatagtgccacaataaacatacatgtgcatgtgtctttatagtagaatgatttataattctttgggtatatacccagtaatgagattgctgggtaaaatggtatctctgtttctaga
i nomLeu3.chr11             I 381 C 0
s rheMac3.chr11              79662971 195 - 134985053 atgtacatgtgccacattttctttatccagtctatcattgatgggcattcgggttggttccaagtctttgctattgtgagcagtgctgcaataaacataaacgtgcatgtgtctttatagtagaatgatttataatcctttgggtatatacccagtaatgggattgctgggtaaaatggtatttctgtttctaga
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80762245 195 - 137757926 atgtacatgtgccacattttctttatccagtctatcattgatgggcattcgggttggttccaagtctttgctattgtgagcagtgctgcaataaacataaacgtgcatgtgtctttatagtagaatgatttataatcctttgggtatatacccagtaatgggattgctgggtaaaatggtatttctgtttctaga
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78715358 195 - 132286798 gtgtacatgtgccacattttctttatccagtctatcattgatgggcattcgggttggttccaagtctttgctattgtgagcagtgctgcaataaacataaacgtgcatgtgtctttatagtagaatgatttataatcctttgggtatatacccagtaatgggattgctgggtaaaatggtatttctgtttctaga
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74638866 195 - 128539186 gtgtacatgtgccacattttctttatccagtctatcattgatgggcattcgggttggttccaagtctttgctattgtgaacagtgctgcaataaacataaatgtgcatgtgtctttatagtagaatgatttataatcctttgggtatatacccagtaatgggattgctgggtaaaatggtatttctgtttctaga
i chlSab2.chr11             C 0 C 0
e mm10.chr10                126867333 2081 + 130694993 I
e canFam3.chr10              67320704   0 -  69331447 C
e calJac3.chr9               77437968   8 - 124281992 I

a score=89695.000000
s hg38.chr12_GL383550v2_alt    115635 28 +    169178 tccttgaggaatcgccacCCAAATACAT
s panTro4.chr12              31353105 28 + 134246214 tccttgaggaatcgccacCCAAATACAT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78551782 28 - 136387465 tccttgaggaatcgccacCCAAATACAT
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54777510 28 + 123690457 tccttgaggaatgaccacCCAAATACAT
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79663166 28 - 134985053 tccttgaggaatcaccacCCAAATACAT
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80762440 28 - 137757926 tccttgaggaatcaccacCCAAATACAT
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78715553 28 - 132286798 tccttgaggaatcaccacccaaatacat
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74639061 28 - 128539186 tccttgaggaatcaccacCCAAATACAT
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77437976 28 - 124281992 TCCTTGAGGAGTCACCACCCAAATACGT
i calJac3.chr9              I 8 C 0
e mm10.chr10                126867333 2081 + 130694993 I
e canFam3.chr10              67320704  0 -  69331447 C

a score=2260751.000000
s hg38.chr12_GL383550v2_alt    115663 673 +    169178  
s panTro4.chr12              31353133 673 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78551810 673 - 136387465  
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54777538 672 + 123690457  
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79663194 678 - 134985053  
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80762468 678 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78715581 678 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74639089 680 - 128539186  
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77438004 650 - 124281992  
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67320704 672 -  69331447  
i canFam3.chr10             C 0 C 0
e mm10.chr10                126867333 2081 + 130694993 I

a score=870479.000000
s hg38.chr12_GL383550v2_alt    116336 267 +    169178 CAGAAATGTATCATATGACACTTCATTGTCTGGTTCAGGAGTTAAGTCAGTCCAGCCATGGCCATCTCCCACCCAACTAGA--TTTAG-TTCCTTAACTTCACAAGCCTCCATCCACCACTGCCTTCCTTAATTAGACCTATGGTCCCTCACACACAGTCA-A-----CACACTTGTAAAGACCCAGGCATTCAAGCATAAACCAGAAACATAGTACATCCAGTTGCCAAAAT---GGTTAAGTAC----TTTTTTAGCGAAGGATCTTAAGCAAatata------------------------------------------tat
s panTro4.chr12              31353806 309 + 134246214 CAGAAATGTATCATATGACACTTCATTGTCTGGTTCAGGAGTTAAGTCAGTCCAGCCATGGCCATCTCCCACCCAACTAGA--TTTAG-TTCCTTAACTTCACAAGCCTCCATCCACCACTGCCTTCCTTAATTAGACCTATGATCCCTCACACACAGTCA-A-----CACACTTGTAAAGACCCAAGCATTCAAGCATAAACCAGAAACATAGTACATCCAGTTGCCAAAAT---GGTTAAGTAC----TTTTTTAGCGAAGGATCTTAAGCAAatatatatatatatatatatatatatatgcatatatatatatatatgtat
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78552483 269 - 136387465 CAGACATGTATCATATGACACTTCATTGTCTGGTTCAGGAGTTAAGTCAGTCCAGCCATGGCCATCTCCCACCCAACTAGGATTTTAG-TTCCTCAACTTCATAAGCCTCCATCCACCACTGCCTTCCTTAATTAGACCTATGATCCCTCACACACAGTCA-A-----CACACTTGTAAAGACCCAGGCATTCAAGCATAAACCAGAAACATAGTACATCCAGTTGCCAAAAT---GGTTAAGTAC----TTTTTTAGCAAAGGATCTTAAGCaaatata------------------------------------------tat
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54778210 269 + 123690457 CAGAATTGTATCATATGACACTTCACTGTCTGGTTCAGGAGTTAAGTCAGCCCAGCCATGGCCTTCTCCCACCCAACTAAGATTTTAG-TTCCTCAACTTCATGAGCCTCCATCCACCCCTGCCTTCCTTAATTAGACCTATGATCCCTCACACACAGTCA-A-----CACATTTGTAAAGACCCAGGCATTCAAGCATAAACCAGAAACATTGTACATCCAGTTGCCAAAAT---GGTTAAGTAC----TTTTTTAGCGAAGGATCTTAAGCAAATATA------------------------------------------TAT
i nomLeu3.chr11             C 0 M 100
s rheMac3.chr11              79663872 299 - 134985053 TGGAATTGTATCATATGACACTCCATTATCTGGCTCAGGAGTTAAGTCAGTCCAGCTAAAGCCATCTCCCACCCAACTAGGATTTTAG-TTCCTTAACTTCATAAACCTCCATCCACCACTGCCTTCCTTAATTAGACCTATGATTCCTCACACACAGTCA-A-----CACACTTGTAAAGACCCAGGCATTCAAGCATAAACCAGAAATGTAGTACATCCGGTTGCCAAAAT---GGTTAAGTAC----TTTATTAGCGAAGGATCTTAAGCACatatatatgtgtatatatatatgtgtgtgtgtgtgtgt------------
i rheMac3.chr11             C 0 I 4
s macFas5.chr11              80763146 309 - 137757926 TGGAATTGTATCATATGACACTCCATTATCTGGCTCAGGAGTTAAGTCAGTCCAGCTAAAGCCATCTCCCACCCAACTAGGATTTTAG-TTCCTTAACTTCATAAACCTCCATCCACCACTGCCTTCCTTAATTAGACCTATGATTCCTCACACACAGTCA-A-----CACACTTGTAAAGACCCAGGCATTCAAGCATAAACCAGAAATGTAGTACATCCGGTTGCCAAAAT---GGTTAAGTAC----TTTATTAGCGAAGGATCTTAAGCACATATATAtgtgtatatatatatgtgtgtgtgtgtgtgtgtgtata--tgc
i macFas5.chr11             C 0 I 4
s papAnu2.chr11              78716259 309 - 132286798 TGGAATTGTATCATATGACACTCCATTATCTGGCTCAGGAGTTAAGTCAGTCCGGCCAAAGCCATCTCCCACCCAACTAGGATTTTAG-TTCCTTAACTTCATAAACCTCCATCCACCGCTGCCTTCCTTAATTAGACCTATGATTCCTCACACACAGTCA-A-----CACACTTGTAAAGACCCAGGCATTCAAGCATAAACCAGAAATGTAGTACATCCGGTTGCCAAAAT---GGTTAAGTAC----TTTATTAGCGAAGGATCTTaagcacatatatatgtgtgtgtatatatgtgtgtgtgtgtgtgtgtatata--tgc
i papAnu2.chr11             C 0 I 4
s chlSab2.chr11              74639769 311 - 128539186 CGGAATTGTATCATATGACACTCCATTATCTGGTTCAGGAGTTAAGTCAGTCCAGCCAAAGCCATCTCCCACCCAACTAGGATTTTAG-TTCCTTAACTTCATAAACCTCCATCCACCACTGCCTTCCTTAATTAGACCTATGATTCCTCACACACAGTCA-A-----CACACTTGTAAAGACCCAGGCATTCAAGCATAAACCAGAAATGTAGTACATCCGGTTGCCAAAAT---GGTTAAGTAC----TTTATTAGCGAAGGATCTTAAGCATATATATAtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtatatatatgtgt
i chlSab2.chr11             C 0 I 4
s calJac3.chr9               77438654 255 - 124281992 CAGAATTGTATCATAT----------TGTCTGGTTTAAGAGTTAAGTCAGTCCAGCCTTGGCCATCTCCCATCCAACTAGGATTTTAG-TTCCCTAACTTCACAAGCCTCCATCCACCACTCCCTTTCTTAATTAGACCTACGATCCCTTACACACAGTCA-A-----CACACTTGCAAAGACTCAGGCATTCAAGCAGAAACCAAAAACATAGTGCATCTAGTGGCCAAAAT---AATTAAGTAC--------TTAGCAAAAGATCTGAAGCAAAAATATAT------------------------------------------
i calJac3.chr9              C 0 C 0
s mm10.chr10                126869414 248 + 130694993 CAGAACTGTCACATTTGACTCC----TGTTGTAGTTGGGAGCCAAGTCAGCCCACCTA--GCAATCCCAC-CCTGTCTGGGACTTTCGCTTCTCTACCCTGATAAATACCCACCCACCCTTGACT----------------------CTTTCTCACAGTGG-AAGATCCGAGAGGGAAAAAACGCCAGGATCTAAGCACAAA-AGGAAGCACAGGACTTTCAGATGTCAAAGCCGAGCCGAAGGAC----TTCCTAAATCAAGGCGCCTAGGCGAAAAGCTAT------------------------------------------
i mm10.chr10                I 2081 C 0
s canFam3.chr10              67321376 263 -  69331447 CAGAACTATGGCACGTGACACTCCATTCTCTGGTTTAGGAGTCAAGGCAGTCCTGCCATGGCCATCTCCCACCCAAATGGGATCTTTGCTTCCTTCACCTGGTAAAGCTCCACCAGCCAGCACCTTGGCTAATTAGACCTCTGATCATT--CCCACAGTCACA-----CATACTTGCATA---CCAAGCATTCAAGCTTAACCCAGAAGCACAGTGCTTCCAATTCCCAAAAT---AGCTAAAAAATACATTTCTTAGCCAAGGATCTTGGACAAA-------------------------------------------------
i canFam3.chr10             C 0 C 0

a score=298358.000000
s hg38.chr12_GL383550v2_alt    116603 93 +    169178 atatatatatgttatttaGGGTCATGCAAGTGCTGAACAGTACACTAGAACTGCTTTTAGTTTCTAATC--TTTTAACAACACTGCATGGCAAAG
s panTro4.chr12              31354115 93 + 134246214 atatatatatGTTATTTAGGGTCATGCAAGTGCTGAACAGTACACTAGAACTGCTTTTAGTTTCTAATC--TTTTAACAACACTGCATGGCAAAG
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78552752 95 - 136387465 atatatatatgttatttaGGGTCATGCAAGTGCTGAACAGTACACTAGAACTGCTTTTAGTTTCTAATCTGTTTTAACAACACTGCATGGCAAAG
i ponAbe2.chr12             C 0 C 0
s rheMac3.chr11              79664175 95 - 134985053 gtatatatatgtTGTTTAGGGTCATACAAGTGCTGAACAGTACACTAGAACTGCTTTTAGTTTCTAATCTGTTTTAACAACACTGCATGGCAAAG
i rheMac3.chr11             I 4 C 0
s macFas5.chr11              80763459 95 - 137757926 gtatatatatgttgtTTAGGGTCATACAAGTGCTGAACAGTACACTAGAACTGCTTTTAGTTTCTAATCTGTTTTAACAACACTGCATGGCAAAG
i macFas5.chr11             I 4 C 0
s papAnu2.chr11              78716572 95 - 132286798 gtgtatatatgttatttaGGGTCATACAAGTGCTGAACAGTACACTAGAACTGCTTTTAGTTTCTAATCTGTTTTAACAACACTGCATGGCAAag
i papAnu2.chr11             I 4 C 0
s chlSab2.chr11              74640084 95 - 128539186 gtatatatatgttatttaGGGTCATGCAAGTGCTGAATAGTACACTAGAACTGCTTTTAGTTTCTAATCTATTTTAACAACACTGCGTGGCAAAG
i chlSab2.chr11             I 4 C 0
s calJac3.chr9               77438909 86 - 124281992 ---------TATTATTCAGGGTCATGCAAGTGCTGAACAGTACACTACACCTGCTTTTAGTTTCTAATCTGTTTTAACAACACTGCATGGCAAAG
i calJac3.chr9              C 0 C 0
s mm10.chr10                126869662 87 + 130694993 --------ACATCATTTAGGGAAATGCAGACGCTGGAGAGTGCACTAGACCTGCATTTAATTTCTAATCTGTTTTTGCACCGCTGCATGCCAAAG
i mm10.chr10                C 0 C 0
s canFam3.chr10              67321639 93 -  69331447 --AGAAATAGATCATTTATGGCAATGCAAGTGCGCAACAGCACACTGGCACTCTGTTTAGTTTCTGATCTGCTTTAGCAACACTGCATGGTGAGG
i canFam3.chr10             C 0 C 0
e nomLeu3.chr11              54778479 100 + 123690457 M

a score=188079.000000
s hg38.chr12_GL383550v2_alt    116696 48 +    169178 TTGATTAAA---------ATAAATATTTAAATAAAATCTAAGTTGAACAAAGCATTA
s panTro4.chr12              31354208 48 + 134246214 TTGattaaa---------ataaatatttaaataaaatCTAAGTTGAACAAAGCATTA
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78552847 48 - 136387465 TTGatttaa---------ataaatatttaaataaaatCTAAGTTGAACAAAGCATTA
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54778582 57 + 123690457 TTAATtaaatacatatatatatatatttaaataAAATGAAAAAAGAACAAAGCATTA
i nomLeu3.chr11             M 100 C 0
s rheMac3.chr11              79664270 48 - 134985053 TTGATTAAA---------ATAAATATTCAAATAAAATCTAAGTTGAACAAAGCAATA
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80763554 48 - 137757926 TTGATTAAA---------ATAAATATTCAAATAAAATCTAAGTTGAACAAAGCAATA
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78716667 48 - 132286798 ttgattaaa---------ataaatattcaaataaaatctaagttgaacaaagcaata
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74640179 48 - 128539186 TTGATTAAA---------ATAAATATTCAAATAAAATCTAAGTTGAACAAAGCAATA
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77438995 48 - 124281992 TGGattaaa---------ataaatatttaaataaaatCTAAGTTGAACAAAGCATTA
i calJac3.chr9              C 0 C 0
s mm10.chr10                126869749 48 + 130694993 TTGATTCAA---------ATAAATATTTAAATAAAACCTGAACTGCACAGAGTACTG
i mm10.chr10                C 0 C 0
s canFam3.chr10              67321732 48 -  69331447 TCGACTATA---------ATAAATATTTCAATAAAATCTAAGTTGCACAAAGCATTG
i canFam3.chr10             C 0 C 0

a score=4500.000000
s hg38.chr12_GL383550v2_alt    116744 1 +    169178 C
s panTro4.chr12              31354256 1 + 134246214 C
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78552895 1 - 136387465 C
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54778639 1 + 123690457 C
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79664318 1 - 134985053 C
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80763602 1 - 137757926 C
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78716715 1 - 132286798 c
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74640227 1 - 128539186 C
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77439043 1 - 124281992 C
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67321780 1 -  69331447 C
i canFam3.chr10             C 0 C 0
e mm10.chr10                126869797 0 + 130694993 C

a score=19816.000000
s hg38.chr12_GL383550v2_alt    116745 7 +    169178 AAAAATG
s panTro4.chr12              31354257 7 + 134246214 AAAAATG
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78552896 7 - 136387465 AAAAATG
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54778640 7 + 123690457 AAAAATC
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79664319 7 - 134985053 AAAAATG
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80763603 7 - 137757926 AAAAATG
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78716716 7 - 132286798 aaaaatg
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74640228 7 - 128539186 AAAAATG
i chlSab2.chr11             C 0 C 0
s canFam3.chr10              67321781 7 -  69331447 AAAAAGG
i canFam3.chr10             C 0 I 1
e mm10.chr10                126869797 0 + 130694993 C
e calJac3.chr9               77439044 0 - 124281992 C

a score=1677115.000000
s hg38.chr12_GL383550v2_alt    116752 712 +    169178  
s panTro4.chr12              31354264 709 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78552903 727 - 136387465  
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54778647 723 + 123690457  
i nomLeu3.chr11             C 0 I 317
s rheMac3.chr11              79664326 725 - 134985053  
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80763610 725 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78716723 725 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74640235 725 - 128539186  
i chlSab2.chr11             C 0 C 0
e mm10.chr10                126869797   0 + 130694993 C
e canFam3.chr10              67321788   1 -  69331447 I
e calJac3.chr9               77439044   0 - 124281992 C

a score=2593592.000000
s hg38.chr12_GL383550v2_alt    117464 1073 +    169178  
s panTro4.chr12              31354973 1074 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78553630 1071 - 136387465  
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54779687 1060 + 123690457  
i nomLeu3.chr11             I 317 C 0
s rheMac3.chr11              79665051 1084 - 134985053  
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80764335 1081 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78717448 1082 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74640960 1084 - 128539186  
i chlSab2.chr11             C 0 C 0
e mm10.chr10                126869797    0 + 130694993 C
e canFam3.chr10              67321788    1 -  69331447 I
e calJac3.chr9               77439044    0 - 124281992 C

a score=3276.000000
s hg38.chr12_GL383550v2_alt    118537 1 +    169178 A
s panTro4.chr12              31356047 1 + 134246214 A
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78554701 1 - 136387465 A
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54780747 1 + 123690457 A
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79666135 1 - 134985053 A
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80765416 1 - 137757926 A
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78718530 1 - 132286798 a
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74642044 1 - 128539186 A
i chlSab2.chr11             C 0 C 0
s mm10.chr10                126869797 1 + 130694993 A
i mm10.chr10                C 0 C 0
e canFam3.chr10              67321788 1 -  69331447 I
e calJac3.chr9               77439044 0 - 124281992 C

a score=39550.000000
s hg38.chr12_GL383550v2_alt    118538 12 +    169178 AAAAATGTTTAA
s panTro4.chr12              31356048 12 + 134246214 AAAAATGTTTAA
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78554702 12 - 136387465 AAAAATGTTTGA
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54780748 12 + 123690457 AAAAATGTTTAA
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79666136 12 - 134985053 AAAAATGTTTAA
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80765417 12 - 137757926 AAAAATGTTTAA
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78718531 12 - 132286798 aaaaatgtttaa
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74642045 12 - 128539186 AAAAATGTTGAA
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77439044 12 - 124281992 AAAAATGTTTAA
i calJac3.chr9              C 0 C 0
s mm10.chr10                126869798 12 + 130694993 GAAAATGACCGG
i mm10.chr10                C 0 C 0
e canFam3.chr10              67321788  1 -  69331447 I

a score=1714903.000000
s hg38.chr12_GL383550v2_alt    118550 516 +    169178  
s panTro4.chr12              31356060 516 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78554714 523 - 136387465  
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54780760 516 + 123690457  
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79666148 510 - 134985053  
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80765429 509 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78718543 509 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74642057 506 - 128539186  
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77439056 524 - 124281992  
i calJac3.chr9              C 0 C 0
s mm10.chr10                126869810 616 + 130694993  
i mm10.chr10                C 0 I 1403
s canFam3.chr10              67321789 485 -  69331447  
i canFam3.chr10             I 1 C 0

a score=85860.000000
s hg38.chr12_GL383550v2_alt    119066 24 +    169178 atttctactaaatactt-atactaa
s panTro4.chr12              31356576 24 + 134246214 atttctactaaatactt-atactaa
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78555237 24 - 136387465 atttctactaaatactt-ataataa
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54781276 24 + 123690457 atttctactaaatactt-atactaa
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79666658 24 - 134985053 ATTTCTACTAAATACTT-ATACTAA
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80765938 24 - 137757926 ATTTCTACTAAATACTT-ATACTAA
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78719052 24 - 132286798 ATTTCTACTaaatactt-atactaa
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74642563 24 - 128539186 atttctactaaatactt-atactaa
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77439580 24 - 124281992 atttctactaaatactt-gtactaa
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67322274 25 -  69331447 ACTCATACTAAATACTCAATACAAA
i canFam3.chr10             C 0 C 0
e mm10.chr10                126870426 1403 + 130694993 I

a score=634676.000000
s hg38.chr12_GL383550v2_alt    119090 191 +    169178 --aaaatgctaaattcttaggtaaaaaaaaaa-tatttacagttgatctgaaattcaaatttaactggattt-----cctgtatcttacctagtgacctta--TCTATTCTCATGTGTGCTCTGAATTTCATAATTGAAATTCTTTTCTGTTATGATAATCAGAG--TTTATCCTACCGTAATAATGACTAAAA-CCAAACACA----------------------------------------------------------------------------
s panTro4.chr12              31356600 189 + 134246214 --aaaatgctaaattcttaggtaaaaaaaaa---atttacagttgatctgaaattcaaatttgactggattt-----cctgtatcttacctagtgacctta--TCTATTCTCATGTGTGCTCTGAATTGCATAATTGAAATTCTTTTCTGTTATGATAATCAGAA--TTTATCCTACCATAATAATGACTAAAA-CCAAACACA----------------------------------------------------------------------------
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78555261 192 - 136387465 --aaaatgctaaattctttggtaaaaaaaaaagtatttacagttgatctgaaattcaaatttaactggattt-----cctgtatcttacctagtgacctta--TCTATTCTCATGTGTGCTCTGAATTTCATAATTGAAATTCTTTTCTCTTATGATAACCAGAA--TTTATCCTACCATAATAATGACTAAAA-CCAAACACG----------------------------------------------------------------------------
i ponAbe2.chr12             C 0 I 2
s nomLeu3.chr11              54781300 190 + 123690457 --aaaatgctaaattcttaggtaaaaaaaaaaggatttacagttgatctgaaattcaaatttaactggattt-----cctgtatcttacctggtgaccTAA--TCTGTTCTCATGTGTGCTCTGAATTTCATAATTGAAATTCTTTTCTGTTATGATAATCAG----TTTATCCTACCATAATAATGACTAAAA-CCAAACATA----------------------------------------------------------------------------
i nomLeu3.chr11             C 0 I 2
s rheMac3.chr11              79666682 190 - 134985053 --AAAATGCTAAATCATTAGGTTAaaaaaag--tatttatggttgatctgaaattcaaatttaactggattt-----cctctatcttacctagtgacctta--TGTATTCTCATGTGTGCGCTGAATTTCATCATTGAAATTCTTTCCTTTTATGATAATCAGAG--TTTATCCTACCATAATAATGACTAAAA-CCAAACATA----------------------------------------------------------------------------
i rheMac3.chr11             C 0 I 2
s macFas5.chr11              80765962 190 - 137757926 --AAAATGCTAAATCATTAGGTTAaaaaaag--tatttatggttgatctgaaattcaaatttaactggattt-----cctctatcttacctagtgacctta--TGTATTCTCATGTGTGCGCTGAATTTCATCATTGAAATTCTTTCCTTTTATGATAATCAGAG--TTTATCCTACCATAATAATGACTAAAA-CCAAACATA----------------------------------------------------------------------------
i macFas5.chr11             C 0 I 2
s papAnu2.chr11              78719076 188 - 132286798 --aaaatgctaaatcattaggttaaaaaaag--tatttatggttgatctgaaattcaaatttaactggattt-----CCTGTATCTTACCTAGTGACTTTA--TGTATTCTCATGTGTGCGCTGAATTTCATCATtgaaattctttccttttatgATAATC--AG--TTTATCCTACCATAATAATGACTAAAA-CCAAACata----------------------------------------------------------------------------
i papAnu2.chr11             C 0 I 2
s chlSab2.chr11              74642587 190 - 128539186 --aagatgctaaatcattagattaaaaaaag--tatttatggttgatctgaaattcaaatttaactggattt-----cctgtatcttacctagtgacctta--TGTATTCTCATGTGAGCACTGAATTTCATCATTGAAATTCTTTCCTTTTATGATAATCAGAG--TTTATCCTACCATAATAATGACTAAAA-CCAAACATA----------------------------------------------------------------------------
i chlSab2.chr11             C 0 I 2
s calJac3.chr9               77439604 190 - 124281992 --aaaatgcttaatcattaggttaaaaaagg--tatttatggttga---gaaattcaaatttaactggattt-----cctgtatcttacctagtgatctta--TCTATTCTCATGTGTGCTCTGAATCTCATAATTGAAATTCTTTTCTCTTATGATATTCAGAAACTTTATCCTACCATAATAATAAGTAAAAGCAAAACATA----------------------------------------------------------------------------
i calJac3.chr9              C 0 I 2
s mm10.chr10                126871829 198 + 130694993 --AAAACACTAAGTCACCGAAT-AAAACAGG--TATTCACTGTTTATCTAAAATTCCCGCTTTACCAGGTTTTTTTCTCTGT-TTTTTTCTGATAAGTTTACCTCCATTTTCCTGTGACCTCTGAACTTCACAACTAAAATTATTTTCGCTTACGCTAACCAGAGCAGTTAGCTCATCTTAATAAAGAATAAAAACAAAGCATC----------------------------------------------------------------------------
i mm10.chr10                I 1403 I 2
s canFam3.chr10              67322299 268 -  69331447 AAAAATTACTAAATTCTTGAGC--aaaaaag--catccactgttaatctgaaattcaaatgtaactgggttt-----tctatattttatctggcaaactta-ACCTATTTTTACATGCACTCTGAATTTTATAATTGAAATTCTTTTCTCTTGTAATAATCAGAG--TTTGCCCTACCAAAATAATGAATAAAAGCAAGACATCTCTTTCTCTGttttctttttaattttttatttatttatgatagtcacacagagagagagagagaggcagagacaca
i canFam3.chr10             C 0 I 122

a score=406455.000000
s hg38.chr12_GL383550v2_alt    119281 128 +    169178 TTTCTTTATTTTCTATTTCTTTCCTCACATTTTGTGAAACG-------CTGAGTAGGTTTTCACATAACAATGCTTAATGCAC-AAATTGACATAACAAGGTTTGTTAGTCATGAGA------TTAAA-------------------------------------------------------------AGCATTTGTTCTTA
s panTro4.chr12              31356789 128 + 134246214 TTTCTTTATTTTCTATTTCTTTCCTCACATTTTGTGAAACG-------CTGAGTAGGTTTTCACATAACAATGCTTAATGCAC-AAATTGACATAACAAGGTTTGTTAGTCATGAGA------TTAAA-------------------------------------------------------------AGCATTTGTTCTTA
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78555455 128 - 136387465 TTTCTTTATTTTCTATTTCTTTCCTTACATTTTGTGAAATG-------CTGAGTAGGTTTTCACATAACAATGCTTAATGCAC-AAATTGACATAACAGGGTTTGTTAGTCATGAGA------TTAAA-------------------------------------------------------------AGCATTTGTTCTTA
i ponAbe2.chr12             I 2 C 0
s nomLeu3.chr11              54781492 128 + 123690457 TTTCTTTATTTTCTATTTCTTTCCTCACATTTTGTGAAACG-------CTGAGTAGCTTTTCACATAACAATGCTTAATGCAC-AAATTGACATAACAGGGTTTGTTAGTCATGAGA------TTAAA-------------------------------------------------------------AACATTTGTTCTTA
i nomLeu3.chr11             I 2 C 0
s rheMac3.chr11              79666874 136 - 134985053 TTTCTTTATTTTCTATTTCTTTCCTCACATTTTGTGAAACGTTGAGTACTGAGTAGGTCTTCACATATCAATGCTTAATACACAAAACTGAATTAGCAGAGTTCGTTAGTCATGAGA------TTAAA-------------------------------------------------------------AGCATTTGTTCTTA
i rheMac3.chr11             I 2 C 0
s macFas5.chr11              80766154 136 - 137757926 TTTCTTTATTTTCTATTTCTTTCCTCACATTTTGTGAAACGTTGAGTACTGAGTAGGTCTTCACATATCAATGCTTAATACACAAAACTGAATTAGCAGAGTTCGTTAGTCATGAGA------TTAAA-------------------------------------------------------------AGCATTTGTTCTTA
i macFas5.chr11             I 2 C 0
s papAnu2.chr11              78719266 136 - 132286798 tttctttattttctatttctttcctcacATTTTGTGAAACACTGAGTACTGAGTAGGTTTTCACATATCAATGCTTAATACACAAAACTGAATTAGCAGAGTTCGTTAGTCATGAGA------TTAAA-------------------------------------------------------------AGCATTTGTTCTTA
i papAnu2.chr11             I 2 C 0
s chlSab2.chr11              74642779 133 - 128539186 TTTCTTTATTTTCTATTTCTTTCCTCACATTTTGTGAAACACTGAGTACTGAGTAGGTTTTCACATATCAATGCTTAATGCACAAAACTGAATTAGCAGAGTTCGTTAGTCATGAGA------TTAAA-------------------------------------------------------------AGCAT---TTCTTA
i chlSab2.chr11             I 2 C 0
s calJac3.chr9               77439796 130 - 124281992 TTTCTCTATTTTCTATTTCTTCCCTCACATGTTGTGATAAA------ACTGAATAGGTTTTCACATATCAACGCTTAAGGCAAAAGACTGAATTAGCAGGGTTTGTTAGTCATGAGA------TTAAA-------------------------------------------------------------AACATTTGTTCTTA
i calJac3.chr9              I 2 C 0
s mm10.chr10                126872029 112 + 130694993 TCCCTTCATTTTCTGTTTGTCCCCTCG---------------------------AGTCTTTAACAT--CGGATCTAAGAGTAA-GAGCCTAGTAAGGAGGGTCAGCCAGACACGAGACTGAAGTTCAA-------------------------------------------------------------GAAACTTGTTCTTA
i mm10.chr10                I 2 C 0
s canFam3.chr10              67322689 188 -  69331447 TTTCTCTGTTTTCTATTTCTTCCCTCACATTTTGTGAGACA-------CCAGATAGGTTTTAATATATCAAAGCTTAAAGTA--AGACTGAATTAGCTGGGTGAGCTAGGCATGAGA------TTAAAAAACTTTTTTTTTCTTTAAAAAAAAAAGTTGTTTAgggatgcctgggtggctcagcagttgagcatctgctttca
i canFam3.chr10             I 122 I 122

a score=325498.000000
s hg38.chr12_GL383550v2_alt    119409 89 +    169178 AAAGAAGAGTTATTTAATTAATGGATGGATTAAGTAAGAACAATCCTGAATTCCTCAACTTCCTTTATGGAGCAACAAACATACTATAT
s panTro4.chr12              31356917 89 + 134246214 AAAGAAGAGTTATTTAATTAATGGATGGATTAAGTAAGAACAATCCTGAATTCCTCAACTTCCTTTATGGAGCAACAAACATACTATAT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78555583 89 - 136387465 AAAGAAGAGTTATTTAATTAATGGATGGATTAAGTAAGAACAATCCTGAATTCCTCAACTTCCTTTATGGAGCAACAAACATACTATAT
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54781620 89 + 123690457 AAAGAAGAGTTATTTAATTAATAGATGGATTAAGTAAGAACAATCCTGAATTCCTCAACTTCCTTTATGGAGCAACAAACATACTATAT
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79667010 89 - 134985053 AAGGAAGAGTTATTTAGTTAACGGATGGATTAAGTAAGAACAATCCTGAATTCCTCAACTTCCTTTATGGAGCAACAAACACACTACAT
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80766290 89 - 137757926 AAGGAAGAGTTATTTAGTTAACGGATGGATTAAGTAAGAACAATCCTGAATTCCTCAACTTCCTTTATGGAGCAACAAACACACTATAT
i macFas5.chr11             C 0 I 301
s papAnu2.chr11              78719402 89 - 132286798 AAGGAAGAGTTATTTAGTTAACAGATGGATTAAGTAAGAACAATCCTGAATTCCTCAACTTCCTTTATGGAGCAACAAACACACTatat
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74642912 89 - 128539186 AAGGAAGAGTTATTTAGTTAACGGATGGATTAAGTAAGAACAATCTTGAATTCCTCAACTTCCTTTATGGAGCAACAAACACACTATAT
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77439926 89 - 124281992 AAAGAAGAGTTATTTAATTAATGGATGGATTAAATGAAAACAGTCCTGAATTCCTCTGCTTCCTTTATGGAACAACAGACATACCACAT
i calJac3.chr9              C 0 C 0
s mm10.chr10                126872141 63 + 130694993 A------AGTTACTTAATGAAGAAACGTA------AAGAAC-----------TCTCTAGTTTCTTTTT---ACAGCAAAAGTATTATAC
i mm10.chr10                C 0 C 0
s canFam3.chr10              67322999 89 -  69331447 AAAAAGAAGTTATTTAATTAATGAATGGATTGAATGAGAGAAATCCTGAGTTCCCAGGCTTCCTTTCAGCAGCAACAGAGATACTACAT
i canFam3.chr10             I 122 C 0

a score=44975.000000
s hg38.chr12_GL383550v2_alt    119498 13 +    169178 AAAAAGCATATAA
s panTro4.chr12              31357006 13 + 134246214 AAAAAGCATATAA
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78555672 13 - 136387465 ACAAAGCATTTAA
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54781709 13 + 123690457 AAAAAGCATATAA
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79667099 13 - 134985053 AAAAAGCATATAA
i rheMac3.chr11             C 0 I 326
s macFas5.chr11              80766680 13 - 137757926 aaaaaGCATATAA
i macFas5.chr11             I 301 I 1
s papAnu2.chr11              78719491 13 - 132286798 aaaaagcatataa
i papAnu2.chr11             C 0 I 1
s chlSab2.chr11              74643001 13 - 128539186 AAAAAGCATATAA
i chlSab2.chr11             C 0 I 1
s calJac3.chr9               77440015 13 - 124281992 TAAAAGCATATAA
i calJac3.chr9              C 0 I 1
s mm10.chr10                126872204 13 + 130694993 AAAACCTACATAA
i mm10.chr10                C 0 I 1
s canFam3.chr10              67323088 13 -  69331447 AAAATATATTTTA
i canFam3.chr10             C 0 C 0

a score=-5389.000000
s hg38.chr12_GL383550v2_alt    119511  7 +    169178 -AAA-TTCC--------------
s panTro4.chr12              31357019  7 + 134246214 -AAA-TTCC--------------
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78555685  8 - 136387465 -AAAGTTCT--------------
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54781722  7 + 123690457 -AAT-TTCC--------------
i nomLeu3.chr11             C 0 C 0
s macFas5.chr11              80766694  7 - 137757926 -AAG-TTTT--------------
i macFas5.chr11             I 1 I 5
s papAnu2.chr11              78719505  7 - 132286798 -aag-tttt--------------
i papAnu2.chr11             I 1 I 5
s chlSab2.chr11              74643015  7 - 128539186 -AAG-TTTT--------------
i chlSab2.chr11             I 1 I 5
s calJac3.chr9               77440029  7 - 124281992 -AAG-TTCT--------------
i calJac3.chr9              I 1 I 5
s mm10.chr10                126872218  1 + 130694993 -A---------------------
i mm10.chr10                I 1 C 0
s canFam3.chr10              67323101 22 -  69331447 AGGG-TTTTTTTTTGTTTGTTTC
i canFam3.chr10             C 0 C 0
e rheMac3.chr11              79667112 326 - 134985053 I

a score=199058.000000
s hg38.chr12_GL383550v2_alt    119518 61 +    169178 GTTTTACGAATGGTAAGTTTGAAAGTGAGGCCACCCAGATGCAACATTATGCTAAAGCAGT
s panTro4.chr12              31357026 61 + 134246214 GTTTTACGAATGGTAAGTTTGAAAGTGAGGCCACCCAGATGCAACATTATGCTAAAGCAGT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78555693 61 - 136387465 GTTTTACGAATGGTAAGTTTGAAAGTGAGGCCACCCAGATGCAACATTATGCTAAAGCGGT
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54781729 61 + 123690457 ATTTTACGAACGGTAAGTTTGAAAGTGAGGCCACCCAGATGCAACATTATGCTAAAGCAGT
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79667438 61 - 134985053 GTTTTAAGAATGGTAAGTTTGAAAGTAAAGGCACCCAGATGCAACATTATCCTAAAGCAAT
i rheMac3.chr11             I 326 C 0
s macFas5.chr11              80766706 61 - 137757926 GTTTTAAGAATGGTAAGTTTGAAAGTAAAGGCACCCAGATGCAACATTATCCTAAAGCAAT
i macFas5.chr11             I 5 C 0
s papAnu2.chr11              78719517 61 - 132286798 gttttaagaatggTAAGTTTGAAAGTAAAGGCACCCAGATGCAACATTATCCTAAAGCAAT
i papAnu2.chr11             I 5 C 0
s chlSab2.chr11              74643027 61 - 128539186 GTTTTAAGAATGGTAAGTTTGAAAGTAAAGGCACCCAGATGCAACATTATCCTAAAGCAAT
i chlSab2.chr11             I 5 C 0
s calJac3.chr9               77440041 61 - 124281992 GTTCTAAGAGTGGTAAGTTGGAAAGTAAGGGCACCCAGATGTAATATTATCCTAAAGTCGT
i calJac3.chr9              I 5 C 0
s mm10.chr10                126872219 26 + 130694993 ----------------TTTTAAAAGT-------------------ATAATAGTATAGTAGT
i mm10.chr10                C 0 I 198
s canFam3.chr10              67323123 61 -  69331447 ATTCTTAGAATGGTAAATTTGAAAATAAGGGCACCTAGATGCATCATGCTTTTAAGACGGT
i canFam3.chr10             C 0 C 0

a score=260750.000000
s hg38.chr12_GL383550v2_alt    119579 91 +    169178 GATTCTCAAGCTTGCACAGCTGA---ACTTGTGGAAGTTTTTTGGGATTTTGT------GT--Gtttgtttttgag---acagattctcactctgtcacc--caggc
s panTro4.chr12              31357087 91 + 134246214 GATTCTCAAGCTTGCACAGCTGA---ACTTGTGGAAGTTTTTTGGGATTTTGT------GT--Gtttgtttttgag---acagattctcactctgtcacc--caggc
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78555754 91 - 136387465 GATTCTCAAGCTTGCACAGCTGA---ACTTGTGGAAGTTTTTTGGGATTTTGT------GT--GTCTGtttttgag---acagattctcactctgtcacc--caggc
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54781790 91 + 123690457 GATTCTCAAGCATGCACAGCTGA---ACTTGTGGAAGTTTTTTGGGATTTTGT------GT--Gtttgtttttgag---acagattctcactctgtcacc--caagc
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79667499 91 - 134985053 GATTCTCAAGCTTGCACGGCTCA---ACTTGTGGAAGTTTTTTGGGGTTTTGT------GT--Gtttgtttttgag---acagattctcactctgtcacc--cagac
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80766767 91 - 137757926 GATTCTCAAGCTTGCACGGCTCA---ACTTGTGGAAGTTTTTTGGGGTTTTGT------GT--Gtttgtttttgag---acagattctcactctgtcacc--cagac
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78719578 91 - 132286798 GATTCTCAAGCTTGCACGGCTGA---ACTTGTggaagttttttgggtttttgt------gt--gtttgtttttgag---acagattctcactctgtcacc--cagac
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74643088 91 - 128539186 GATTCTCAAGCTTGCACAGCTGA---ACTTGTGGAAGTTTTTTGGGGTTTTGT------GT--Gtttgtttttgag---acagattctcactctgtcacc--cagac
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77440102 95 - 124281992 GAGTCTCAAGCTTGCACAGCTGAATCACTTGTGGAAGTTTTTGGGGggttggttggttggttggttggtttttgag---acag-------ctctgttgcc--caggc
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67323184 84 -  69331447 GAATCTCAATCAAGC-CGGCAGA-------GTGGAG------tagagtctcct------gc--ggaagttttaaaactcaaggatccccaggct-ccacctgcaggc
i canFam3.chr10             C 0 I 85
e mm10.chr10                126872245 198 + 130694993 I

a score=316545.000000
s hg38.chr12_GL383550v2_alt    119670 106 +    169178 tggagtacagtggcacaatcacagttcactgcagccccgaactcttggcctcaagcgatcctcccacatcaacttcccaagtagttgggactaggtgcaccaccat
s panTro4.chr12              31357178 106 + 134246214 tggagtacagtggcacaatcacagttcactgcagccctgaactcttggcctcaagcgatcctcccacatcaacttcccaagtagttgggactaggttcaccaccat
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78555845 106 - 136387465 tggagtacagtggcacagtcatagtccactgcagccccgaactcttggcctcaagcgatcatcccacatcagcttcccaagtagctgggactaggtgcaccaccat
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54781881 104 + 123690457 tggagtacagtggcacaatc--agttcactgcagccccgaactctcagcctcaagcaatcctcccacatcagcttcccaagtagctgggactaggtgaaccaccat
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79667590 106 - 134985053 tggagtacagtggcacaaccacagttcactgcagccccgaactcttggtctcaagcgatcctcccacatcagctccctaagtagctgggactaggtacacaaccat
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80766858 106 - 137757926 tggagtacagtggcacaaccacagttcactgcagccccgaactcttggtctcaagcgatcctcccacatcagcttcctaagtagctgggactaggtacacaaccat
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78719669 106 - 132286798 tggagtacagtggcacaaccacagttcactgcagccccgaactcttggtctcaagcgatcctcccacatcagcttcctaagtagctgggactaggtacaccaccat
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74643179 106 - 128539186 tggagtacagtggcacaaccacagttcactgcagccccgaactcttggtctcaagcaatcctcccacatcagcttcctaagtagctgggactaggtacaccaccat
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77440197 106 - 124281992 tggaataccatagcataatcacagctcactgcagccccaaactcttgggctcaagcgaccctctcgcatcagcttcccgagtagctgagactaggtgcaccaccat
i calJac3.chr9              C 0 C 0
e mm10.chr10                126872245 198 + 130694993 I
e canFam3.chr10              67323268  85 -  69331447 I

a score=234441.000000
s hg38.chr12_GL383550v2_alt    119776  94 +    169178 gcctggctaat----------------tttatttatttatttatttatttatttattttagaaacacggtctcactatgttgtccaggctggtctcaaactcctggcctc
s panTro4.chr12              31357284  90 + 134246214 gcctggctaat--------------------tttatttatttatttatttatttattttagaaacacggcctcactatgttgtccaggctggtctcaaactcctggcctc
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78555951 110 - 136387465 gcctggctaattttatttatttatttatttatttatttatttatttatttatttattttagaaacacggtctcactatgttgtccaggctggtctcaaactcctggcctc
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54781985 106 + 123690457 gcctggctaat----tttatttatttatttatttatttatttatttatttatttattttagaaacatggtctcactatgttgtccaggctggtctcaaactcctggcctc
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79667696  87 - 134985053 gcctggctaat--------------------tttatttatttatttat---tttattttggaaacagagtctcactatgttgtccaggctggtctcaaactcctggcctc
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80766964  87 - 137757926 gcctggctaat--------------------tttatttatttatttat---tttattttggaaacagagtctcactatgttgtccaggctggtctcaaactcctggcctc
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78719775  87 - 132286798 gcctggctaat--------------------tttatttatttatttat---tttattttagaaacagagtctcactatgttgtccaggctggtctcaaactcctggcctc
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74643285  87 - 128539186 acctggctaat--------------------tttatttatttatttat---tttattttagaaacagagtctcactatgttgtccaggctggtctcaaactcctggcctc
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77440303  78 - 124281992 gcctgagtaat--------------------ttgattga------------ctgattttagaaacaggatctcactatgttgtctaggctggtctcaaactcctggcctc
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67323353  47 -  69331447 gcccaggcaat----------------------------------------tttaatatgcag--------------------ccagggtggcc---aaccactgTCCTG
i canFam3.chr10             I 85 C 0
e mm10.chr10                126872245 198 + 130694993 I

a score=109722.000000
s hg38.chr12_GL383550v2_alt    119870 34 +    169178 aagagatccttctgcctcaggct-ccagagtcgct
s panTro4.chr12              31357374 34 + 134246214 aagagatccttctgcctcagcct-ccagagtcgct
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78556061 34 - 136387465 aagagattcttctgcctcagcct-ccagagtcgct
i ponAbe2.chr12             C 0 I 864
s nomLeu3.chr11              54782091 34 + 123690457 aagagatccttcttcctcagcct-ccagagtcgct
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79667783 34 - 134985053 aagagatccttctgcctcagcct-ccagagttgct
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80767051 34 - 137757926 aagagatccttctgcctcagcct-ccagagttgct
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78719862 34 - 132286798 aagagatccttctgcctcagcct-ccagagttgct
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74643372 34 - 128539186 aagagatccttctgcctcagcct-ccagagttgct
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77440381 34 - 124281992 aagagatccttctgcctcagcct-ccagagtccct
i calJac3.chr9              C 0 C 0
s mm10.chr10                126872443 35 + 130694993 AAGGAATCCACTCCCTTGGGGCTGCCAAGGTCCTT
i mm10.chr10                I 198 C 0
s canFam3.chr10              67323400 16 -  69331447 ------------------AGGCC-ATCAAGTCCCT
i canFam3.chr10             C 0 C 0

a score=19755.000000
s hg38.chr12_GL383550v2_alt    119904 9 +    169178 agtattaca
s panTro4.chr12              31357408 9 + 134246214 agtattaca
i panTro4.chr12             C 0 C 0
s nomLeu3.chr11              54782125 9 + 123690457 ggtattgct
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79667817 9 - 134985053 ggtattaca
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80767085 9 - 137757926 ggtattaca
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78719896 9 - 132286798 ggtattaca
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74643406 9 - 128539186 ggtattaca
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77440415 9 - 124281992 ggtattaca
i calJac3.chr9              C 0 C 0
e mm10.chr10                126872478 0 + 130694993 C
e canFam3.chr10              67323416 0 -  69331447 C
e ponAbe2.chr12              78556095 864 - 136387465 I

a score=1117036.000000
s hg38.chr12_GL383550v2_alt    119913 315 +    169178 ggtgtgagctactgcgcctggccAGAGAGTGCTTCTTGATTTTAATATACACATG---AATGAA-ACAGATTGATCTAGCagaatctgggcatttctaattagcaactagttgatgccattgctgctaagccaaggaccatactttgagaagaaagATTTTAGAAGAGACCAAAAAAGAAAAAGCAATTTGTTTCAAAATGGAACTGTATAATGTCTGTGAGAATTGAAAATGCAGATTACTTACCACCACATTACTGCCAGAATGTAATGATAACTGCCACAGAAAC--GAAGGATGGGAGCGGAGATGAAAGAAAACGA
s panTro4.chr12              31357417 315 + 134246214 ggtgtgagctactgcgcctggccAGAGAGTGCTTCTTGATTTTAATATACACATG---AATGAA-ACAGATTGATCTAGCagaatctgggcatttctaattagcagctagttgatgccattgctgctaagccaaggaccatactttgagaagaaagATTTTAGAAGACACCAAAAAAGAAAAAGCAATTTGTTTCAAAATGGAACTGTATAATGTCTGTGAGAATTGAAAATGCAGATTACTTACCACCACATTACTGCCAGAATGTAATGATAACTGCCACAGAAAC--GAAGGATGGGAGCGGAGATGAAAGAAAACGA
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78556959 315 - 136387465 ggtatgagctactgcgcctggccAGAGAGTGCTTCTTGATTTTAATATACACATG---AATGAA-ACAGATTGATCTGGCagaatctgggcattgctaattagcagctagttgatgccattgctgttaagccaaggaccgtacttggagaaGAAAGATTTTAGGAGAGACCAAAAAAGAAAAAGCAATTTGTTTCAATATGGAACTACATAACGTCTGTGTGAATTGAAAATGCAGATTACTTACCACCACATTATTGCCAGAATGTAATGATAACTGCCATAGAAAC--GAAGGATGGGAGCGGAGATGAAAGAAAACGA
i ponAbe2.chr12             I 864 I 3
s nomLeu3.chr11              54782134 315 + 123690457 ggtgtgagctactgcacctggccAGAGAGTGCTTATTGATTTTAATGTACACGTG---AATGAA-ACAGATTGATCTAGCagaatctgggcatttctaattagcagctagttcatgccattgccgctaagccaaggaccatactttgagaagaaagATTTTAGGAGAGACCAAAAAAGAAAAAGCAATTTGTTTCAACACGGAACTATATAATGTCTGTGTGAATTGAAAATGCAGATTACTTACCACCACATTACCGCCAGAATGTAATGATAACTGCCATAGAAAC--GAAGGATGGGAGTGGAGTTGAAAGAAAACAA
i nomLeu3.chr11             C 0 I 3
s rheMac3.chr11              79667826 312 - 134985053 ggtgtgagctactgtgcctggccAGAGAGTGCCTCTTGATTTTAATATACACATG---AATGAA-ACAAATTTATCTAGCagaatctgggcatttctaattagcatctagttgatgccattgctgctaaaccaaggaccatactttgagaagaaagATTTTAGGAGAGACCAAAAAAGAAAAAACAATTTGTTTCAATATGGAACTAC---ATGTCTGTGTGAATTGAAAATGCAGATTACTTACCACCACATTACTGCCAGAATGTAATGATAACTGCCATAGAAAT--GAAGGACGGGAGCAGAGATTAAAGAAAACGA
i rheMac3.chr11             C 0 I 3
s macFas5.chr11              80767094 312 - 137757926 ggtgtgagctactgtgcccggccAGAGAGTGCCTCTTGATTTTAATATACACATG---AATGAA-ACAAATTTATCTAGCagaatctgggcatttctaattagcatctagttgatgccattgctgctaaaccaaggaccatactttgagaagaaagATTTTAGGAGAGACCAAAAAAGAAAAAACAATTTGTTTCAATATGGAACTAC---ATGTCTGTGTGAATTGAAAATGCAGATTACTTACCACCACATTACTGCCAGAATGTAATGATAACTGCCATAGAAAT--GAAGGACGGGAGCAGAGATGAAAGAAAACGA
i macFas5.chr11             C 0 I 3
s papAnu2.chr11              78719905 312 - 132286798 ggtgtgagctactgtgcctggccagagagTGCCTCTTGATTTTAATATACACATG---AATGAA-ACAAATTTATCTAGCAGAATCTGGGCATTTCTAATTAGCATCTAGTTGATGCCATTGCTGCTAAACCaaggaccatactttgagaagaAAGATTTTAGGagagaccaaaaaagaaaaaacaatttgtttCAATATGGAACTAC---ATGTCTGTGTGAATTGAAAATGCAGATTACTTACCACCACATTACTGCCAGAATGTAATGATAACTGCCATAGAAAT--GAAGGACGGGagcagagatgaaagaaaatga
i papAnu2.chr11             C 0 I 3
s chlSab2.chr11              74643415 315 - 128539186 ggtgtgagctactgtgcctggccAGAGAGTGCCTCTTGATTTTAATATACACATG---AACGAA-ACAAATTGATCTAGCagaatctgagcatttctaattagcatctagttgacgccattgctgctaaaccaagtaccatactttgagaaGAACGATTTTAGGAGAGACCAAAAAAGAAAAAACAATTTGTTTCAATATGGAACTACATAATGTCCGTGTGAATTGAAAATGCAGATTACTTATCACCACATTACTGCCAGAATGTAATGATAACTGCCATAGAAAT--GAAGGATGGGAGCGGAGATGAAAGAAAACAA
i chlSab2.chr11             C 0 I 3
s calJac3.chr9               77440424 312 - 124281992 ggtgtgagctactgcacctggccAGAGGGTGCTTCTTGATTTTAATGTACACATG---AATGAA-ACAGATTGATCTGACagaatctgggcatttctaattagcagctagttgatgccattgctgctaagccaaggaccacactttgagaagcaaAATTTTAAGAGAGACCAAAAAAGAAAAA-TAATTTTTTTCAATATGGAACTACATAACGTCCG-GTG-ATTGAAAATGCAGATTACTTACCACCACATTACTGCCAGAATGTAATGCTAACTGCCATAGAAAC--GAAGGATGGGAACGGAGATAAAAGAAAACAA
i calJac3.chr9              C 0 I 302
s mm10.chr10                126872478 286 + 130694993 ----------------------CAAGGACTACTTCTCCACTTTGACGTCTGTGTGTGAATTGAA-GCACACGGA-CTGAGAGCTTTTGAGTCTTTCTAACCAGCTGCTAGCTGTTGTTAATGCT-CAGGACCAAGGGTTCCACTTAGACAGCAAAGAGCCTAGGGGA---CCAAAAAAAAGAGGTAATTTGCTATAATATGGAGTAATATAAGATCTGTGTGTACTGAAATAGCAGGTCAC----AACTACATTACTGTCATAATGTCACAGCAGCTG---TAGAAACGGGAAGGATCGAAATGGGAAGAAAAAGAAAAAA
i mm10.chr10                C 0 I 5
s canFam3.chr10              67323416 277 -  69331447 ---------------------TTGGGGAATGCTTCTTGCTTTTGATGGGCCTGTG---AATCAATACAGGTTGACTCAGTAGAATGTGGG-atttctaactagctctcagttgac-------ctgccaggcaagggaccacactttgaggagcaagATTTTGTGAGAGGCCAGAAAAGAAAAGGCAATTTGTTTCGATATGGAGTCAT--GACGTCTGTTTGAATTGAAAATGCGGATTACTAACAACCAGATTAC--------TATAATGCTAACTGCCACAGAAAT--GAAGGAGGGGTGGGACAGTGAAAGAAAACTT
i canFam3.chr10             C 0 C 0

a score=3100720.000000
s hg38.chr12_GL383550v2_alt    120228 770 +    169178  
s panTro4.chr12              31357732 771 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78557277 770 - 136387465  
i ponAbe2.chr12             I 3 C 0
s nomLeu3.chr11              54782452 771 + 123690457  
i nomLeu3.chr11             I 3 C 0
s rheMac3.chr11              79668141 759 - 134985053  
i rheMac3.chr11             I 3 C 0
s macFas5.chr11              80767409 759 - 137757926  
i macFas5.chr11             I 3 C 0
s papAnu2.chr11              78720220 759 - 132286798  
i papAnu2.chr11             I 3 C 0
s chlSab2.chr11              74643733 759 - 128539186  
i chlSab2.chr11             I 3 C 0
s calJac3.chr9               77441038 771 - 124281992  
i calJac3.chr9              I 302 C 0
s mm10.chr10                126872769 750 + 130694993  
i mm10.chr10                I 5 I 2804
s canFam3.chr10              67323693 807 -  69331447  
i canFam3.chr10             C 0 C 0

a score=75948.000000
s hg38.chr12_GL383550v2_alt    120998 27 +    169178 ATTTCACC--TCAAAGCCAATGCC---------------ttttt
s panTro4.chr12              31358503 28 + 134246214 ATTTCACC--TCAAAGCCAATGCC-------------t-ttttt
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78558047 28 - 136387465 ATTTCACC--TCAAAGCCAATGCC-------------t-ttttt
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54783223 29 + 123690457 ATTTCACC--TCAAAGCCAATGCC-------------TGttttt
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79668900 38 - 134985053 ATTTCACC--TCAAAGCCAATGCC---ttttttttttt-ttttt
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80768168 40 - 137757926 ATTTCACC--TCAAAGCCAATGCC-ttttttttttttt-ttttt
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78720979 30 - 132286798 ATTTCACC--TCAAAgccaatgcc-----------ttt-ttttt
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74644492 41 - 128539186 ATTTCACC--TCAAAGCCAATGCCtttttttttttttt-ttttt
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77441809 38 - 124281992 ATTTCACC--TCAAAGCCAATGCC---ttttgtttttg-tttct
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67324500 25 -  69331447 ----AAGCAATCAAAGCTAATGCC---------------TATCT
i canFam3.chr10             C 0 I 10204
e mm10.chr10                126873519 2804 + 130694993 I

a score=465351.000000
s hg38.chr12_GL383550v2_alt    121025 168 +    169178 ttttttcacacagtctcactttgtcacccagtctgaagtgcagtgatgtgatctctgctcactgcaacctccatctcctgggttcaagcgattctcctgcctcagcctcctgagtagctgggactacaggcatgtgccaccacacccagctaatttttgtggattttt
s panTro4.chr12              31358531 168 + 134246214 ttttttcacacagtctcactttgtcacccaggctgaagtgcagtgatgtgatctctgctcactgcaacctccatctcctgggttcaagcgattctcctgcctcagcctcctgagtagctgggactacaggcatgtgccaccacgcccagctaatttttGTGGTTTTTt
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78558075 168 - 136387465 ttttttcacacagtctcactttgtcacccaagctgaagtgcaatgatgtgatctctgctcactgcaacctccatctcctgggttcaagcgattctcctgcctcagcctcccgagtagctgggactacaggcatgtgccaccacgcccagctaatttttgtggtttttt
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54783252 168 + 123690457 ttttttcacacagtctcactttgtcacccaggctgaagtgcagcaatgtgatctctgctcactgcaacctccatctcctgggttcaagcgattctcctgcctcagcctcccgagtagctgggactacaggcatgcgccaccacgcccagctaatttttgtGTGttttt
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79668938 168 - 134985053 ttttttgacacagtctcactttgttacccagtctggagtgcagtgacgtgatctcttcttactgcaacttccgtctcctgggttcaagtgattctcctgcctcagccccccaagcaactgggactacaggcatgtgccaccacacccagctaatttttGTGGGATATA
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80768208 168 - 137757926 ttttttgacacagtctcactttgttacccagtctggagtgcagtgacgtgatctcttcttactgcaacttccgtctcctgggttcaagtgattctcctgcctcagccccccaagcaactgggactacaggcatgtgccaccacacccagctaatttttGTGGGATATA
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78721009 168 - 132286798 ttttttgacacagtctcactttgtcacccaggctggagtgcagtgacgtgatctcttcttactgcaacttccgtctcctgggttcaagtgattctcctgcctcagccccccaagcaactgggactacaggcatgtgccaccacacccagctaatttttgtgggatata
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74644533 168 - 128539186 tttttttacacagtctcactttgtcacccaggctggagtgcagtgacgtgatctcttcttactgcaacttctgtctcctgggttcaagtgattctcctgcctcagccccccaagcaactgggactacaggcatgtgccaccacacccagctaatttttGTGGGATATA
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77441847 167 - 124281992 gttttagacagagtcttactctgtcacctaggctggagtgcaggggtatgatttcagctcactgcaacctccgtctcctgcattcaagcaattctcatgcctcagtctctcaagtagctggaattacaggtgcccattaccatgccgtgctaattttt-tgcattttt
i calJac3.chr9              C 0 I 5297
e mm10.chr10                126873519 2804 + 130694993 I
e canFam3.chr10              67324525 10204 -  69331447 I

a score=1249122.000000
s hg38.chr12_GL383550v2_alt    121193 538 +    169178  
s panTro4.chr12              31358699 541 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78558243 538 - 136387465  
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54783420 534 + 123690457  
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79669106 539 - 134985053  
i rheMac3.chr11             C 0 I 1304
s macFas5.chr11              80768376 539 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78721177 539 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74644701 538 - 128539186  
i chlSab2.chr11             C 0 C 0
e mm10.chr10                126873519 2804 + 130694993 I
e canFam3.chr10              67324525 10204 -  69331447 I
e calJac3.chr9               77442014 5297 - 124281992 I

a score=120240.000000
s hg38.chr12_GL383550v2_alt    121731 70 +    169178 ctagatccttgaggaatagccacactgtcttcgacaatggttgaactagtttacactccaaccaacagcg
s panTro4.chr12              31359240 70 + 134246214 ctagatccttgaggaatagccacactgtcttcgacaatggttgaactagtttacactccaaccaacagtg
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78558781 70 - 136387465 ctagatccttgaggaatcgccacactgtcttccacaatggttgaactaatttacactccaaccaacagtg
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54783954 70 + 123690457 ctagatccttgaggaatctccacactgtcttccacaatggttgaactaatttacactccaaccaacagtg
i nomLeu3.chr11             C 0 I 870
s macFas5.chr11              80768915 67 - 137757926 ctagatccttgaggaattgccacactgtcttccacaatggttgaactaatttacactc---ccaacagtg
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78721716 67 - 132286798 ctagatccttgaggaattgccacactgtcttccacaatggttgaactaatttacactc---ccaacagtg
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74645239 67 - 128539186 ctagatccttgaggaattgccacactgtcttccacaatggttgaactaatttacattc---ccaacagtg
i chlSab2.chr11             C 0 C 0
e mm10.chr10                126873519 2804 + 130694993 I
e canFam3.chr10              67324525 10204 -  69331447 I
e calJac3.chr9               77442014 5297 - 124281992 I
e rheMac3.chr11              79669645 1304 - 134985053 I

a score=1752850.000000
s hg38.chr12_GL383550v2_alt    121801 1369 +    169178  
s panTro4.chr12              31359310 1369 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78558851 1369 - 136387465  
i ponAbe2.chr12             C 0 C 0
s macFas5.chr11              80768982 1356 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78721783 1356 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74645306 1354 - 128539186  
i chlSab2.chr11             C 0 I 3
e mm10.chr10                126873519 2804 + 130694993 I
e canFam3.chr10              67324525 10204 -  69331447 I
e calJac3.chr9               77442014 5297 - 124281992 I
e rheMac3.chr11              79669645 1304 - 134985053 I
e nomLeu3.chr11              54784024  870 + 123690457 I

a score=18365.000000
s hg38.chr12_GL383550v2_alt    123170 107 +    169178 gtctccatttatttaaatcttccttttgtaagcaatttttaatatttttcttttttcttgtttatttatttaagacagagtcttgctctgttgcccagtttctttct
s panTro4.chr12              31360679 107 + 134246214 gtctccatttatttaaatcttccttttttaagcaatttttaatatttttcctttttcttgtttatttatttaagacagagtcttgctctgttgcccagtttctttct
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78560220 107 - 136387465 gtctccatttatttaaatcttccttttttaagcaatttttattatttttcttttctcttgtttatttatttaagacagagtcttgctctgttgcccaatttctttct
i ponAbe2.chr12             C 0 C 0
s macFas5.chr11              80770338  17 - 137757926 --------------------acccttt----------------------------------------------------------------------atttctttct
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78723139  17 - 132286798 --------------------acccttt----------------------------------------------------------------------atttctttct
i papAnu2.chr11             C 0 C 0
e mm10.chr10                126873519 2804 + 130694993 I
e canFam3.chr10              67324525 10204 -  69331447 I
e calJac3.chr9               77442014 5297 - 124281992 I
e chlSab2.chr11              74646660   3 - 128539186 I
e rheMac3.chr11              79669645 1304 - 134985053 I
e nomLeu3.chr11              54784024 870 + 123690457 I

a score=549907.000000
s hg38.chr12_GL383550v2_alt    123277 320 +    169178 ctttatttctttctcttgcctgattgttctggccagaacttccaatactatgttgaataggagtggtgagagagagcatccttgtc----------ttgtgccagttttcaaagggaatgcttccagcttttgcccattcaatgtgatattggctgtgggtttgtcataaatagctgttattattttgagatacagtccatcaatacctattttattgagagtttttagcatgaaggggtgctgaattttttcaaaggtaggccttttctgcatctattgagataatcatgtggtttttgtcattggttctgtttatgtgatgga-------------------------tta---------------------------------------------------------------------ca
s panTro4.chr12              31360786 320 + 134246214 ctttatttctttctcttgcctgattgttctggccagaacttccaatactatgttgaataggagtggtgagagagagcatccttgtc----------ttgtgccagttttcaaagggaatgcttccagctttcgcccattcaatgtgatattggctgtgggtttgtcataaatagctgttattattttgagatacagtccaccaatacctattttattgagagtttttagcatgaaggggtgctgaattttttcaaaggtaggccttttctgcatctattgagataatcatgtggtttttgtcattggttctgtttatgtgatgga-------------------------tta---------------------------------------------------------------------ca
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78560327 330 - 136387465 ctttatttctttctcttgcctgattgttctggccagaacttccaatactatgttggataggagtggtgagagagagcatccttgtcttgtgccagtttgtgccagttttcaaagggaatgcttccagcttttgcccattcgatgtgatattggctgtgggtttgtcataaatagctgttattattttgagatacagtccatcaatacctattttattgagagtttttagcatgaagaggtgctgaattttttcaaaggtaggccttttctgcatctattgagataatcatgtggtttttgtcattggttctgtttatgtgatgga-------------------------tta---------------------------------------------------------------------ca
i ponAbe2.chr12             C 0 I 1063
s rheMac3.chr11              79670949 395 - 134985053 ctttatttctttctcttgcctgattgttctggctagaacttccaattctatgctgaataggagtggtgagagagagcatccttgtc----------ttgtgctggttttcaaagggaatgcttccagcttttgcccattcaatgtgatattggttgtgggtttgtcataaatagctcttattattttgagatacattccatcaatacctattttattgagagtttttagcatgaaggggtgctgaatgttttcaaaggtaagccttttctgtatctattgagacaatc--gtggtttttgtcattggttctgtttatgtgatgggctctgtttatGTTCTGTTTATCTGATTA-----------------CATGTTTATCTGtttatctattggttctgtttatgttctgtttatctgattaca
i rheMac3.chr11             I 1304 C 0
s macFas5.chr11              80770355 383 - 137757926 --------------cttgcctgattgttctggctagaacttccaattctatgctgaataggagtggtgagagagagcatccttgtc----------ttgtgctggttttcaaagggaatgcttccagcttttgcccattcaatgtgatattggttgtgggtttgtcataaatagctcttattattttgagatacattccatcaatacctattttattgagagtttttagcatgaaggggtgctgaatgttttcaaaggtaagccttttctgtatctattgagacaatcatgtggtttttgtcattggttctgtttatgtgatgggttctgtttatGTTCTGTTTATCTGATTACATGTTTATCTGtttatc-----------------tattggttctgtttatgttctgtttatctgattaca
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78723156 331 - 132286798 --------------cttgcctgattgttctggctagaacttccaattctatgctgaataggagtggtgagagagagcatccttgtc----------ttgtgctggttttcaaagggaatgcttccagcttttgcccattcaatgtgatattggttgtgggtttgtcataaatagctcttattattttgagatacattccatcaatacctattttattgagagtttttagcatgaaggggtgctGAATGTTTTCAAAGGcaagccttttctgtatctattgagacaatcatgtggtttttgtcattggttctgtttatgtgatgggttcTGTTTATGTTCTGTTTAtctgatta---------------------------------------------------------------------ca
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74646663 320 - 128539186 ctttatttctttctcttgcctgattgttctggccagaacttccaattctatgctgaataggagtggtgagagagagcatccttgtc----------ttgtgctggttttcaaagggaaagcttccagcttttgcccattcaatgtgatattggttgtgggtttgtcataaatagctcttattattttgagatacattccatcaatacctattttattgaaagtttttagcatgaaggggtgctgaatgttttcaaaggtaggccttttctgtatctattgagataatcatgtggtttttgtcattggttctgtttatgtgatggg-------------------------tta---------------------------------------------------------------------ca
i chlSab2.chr11             I 3 C 0
e mm10.chr10                126873519 2804 + 130694993 I
e canFam3.chr10              67324525 10204 -  69331447 I
e calJac3.chr9               77442014 5297 - 124281992 I
e nomLeu3.chr11              54784024 870 + 123690457 I

a score=795995.000000
s hg38.chr12_GL383550v2_alt    123597 456 +    169178 tttattgatttgcatatgttgaatcaggcttacatccaagggatgaagctgacttgatctggctgtgacatctgtcaccctattgatggccagggttgatttggctgatctggctggctaggcgggtgtccccttcctccctcactgctccatgtatattagccct----ttgtgcactcggtcaaagaggatgaccatccctgatagaggaggactgcagtctttggtcaagggtataggagtagctgcactcccttgc----tagaacctccaaacaagttctcaaAACAAAATTTTTaattagccagttgtggtggcatacacctctctcccacccactcaagaggctgaggcaagaggatcacttgagccc--------aagagttcatggttacagtgagctgtgattgtactgccacattccaaactgggcaacagagcaagactccgtcttaaataaataaacaa
s panTro4.chr12              31361106 456 + 134246214 tttattgatttgcatatgttgaatcaggcttacatccaagggacaaagctgacttgatctggctgtgacatctgtcaccctactgatggccagtgttgatttggctgatctggctggctaggcgggtgtccctttcctccctcactgctccatgtatattagccct----ttgtgcactcggtcaaagaggatgaccatccctgatagaggaggactgcagtctttggtcaagggtataggagtagctgcactcccttgc----tagaacctccaaacaagttctcaaAacaaaatttttaattagccagatgtggtggcatacacctctctcccacccactcaagaggctgaggcaagaggatcacttgagccc--------aagagttcatggttacagtgagctatgattgtactgccacattccaaactgggcaacagagcaagactccgtcttaaataaataaacaa
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78561720 456 - 136387465 tttattgatttgcatatgttgaaccaggcttacatccaagggatgaagccgacttgatctggctgtgacatctgtcaccccattgatggccagggttgatttggctgctctggctggctaggtgggtgtccccttcttccctcactgctccatgtctattagccct----ttgtgcactcggtcaaagaagatgaccatccctgatagaggaggactgcggtctttagtcaagggtataggagtagctgcactcccttgc----tagaacctccaaacaagttctcaaAACAAAATTTTTaattggccacatgtggtggcatacacctctatcccacccactcaggaggctgaggcaagaggatcacttgagccc--------acgagttcatggttacagtgagctatgattgtactgccacactccaaactgggcaacagagcaagactctgtcttaaataaataaacaa
i ponAbe2.chr12             I 1063 C 0
s rheMac3.chr11              79671344 469 - 134985053 tttattgatttgcatatgttgaatcaaacttacatccaaggggtgaagccgacttgatctggctgtggcatctgtcaccccattgatcaccaggcttggttcagctgatctgactggctaggcgggtgtccccttcctccctcactgctccatgtatgtccctcccaaagctgtgcactcagtcaaagaggacgaccatcccggatagaggaggactg--gtctttggtcaagggtataggagtagctgcactcccttgctagatagaccctccaaac-agttctcaaAACAAAATTTTTaactagccagatgtggtggcatacagctgtatcccacccactcaggaggctgaggcaagaggatcacttgagccctcttgcctcagagttcacggttacagtaagctatgattgtaccaccacactccaaactgggcaacagagcaagactctgtcttaaataaataaacaa
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80770738 469 - 137757926 tttattgatttgcatatgttgaatcaaacttacatccaaggggtgaagccgacttgatctggctatggcatctgtcaccccattgatcaccaggcttggttcagctgatctgactggctaggcgggtgtccccttcctccctcactgctccatgtatgtccctcccaaagctgtgcactcagtcaaagaggacgaccatcccggatagaggaggactg--gtctttggtcaagggtataggagtagctgcactcccttgctagatagaccctccaaac-agttctcaaAACAAAATTTTTaactagccagatgtggtggcatacagctgtatcccacccactcaggaggctgaggcaagaggatcacttgagccctcttgcctcagagttcacggttacagtaagctatgattgtaccaccacactccaaactgggcaacagagcaagactctgtcttaaataaataaacaa
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78723487 468 - 132286798 tttattgatttgcatatgttgaatcaaccttacATCCAAGGGGTGAAGCCGACTTGATCTGGCTATGGCATCTGTCACCCCATTGATCACCAGGCTTGGTTCAGCTGATCTGACTGGCTAGGCgggtgtccccttcctccctcactgctCCA-GTATGTCCCTCCCAAAGCTGTGCACTCAGTCAAAGAGGACGACCATCCCGGATAGAGGAGGACTG--GTCTTTGGTCAAGGGTATAGGAGTAGCTGCACCCCCTTGCTAGATAGACCCTCCAAAC-AgttctcaaaacaaaatttttaactagccagatgtggtggcatacaGCTGTATCCcacccactcaggaggctgaggcaagaggatcacttgagccctctTGCCTCAGAGTTCacggttacagtaagctatgattgtaccaccacactccaaactgggcaacagagcaagactctgtcttaaataaataaacaa
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74646983 466 - 128539186 tttattgatttgcatatgttgaatcaaccttacatccaagggatgaagctgacttgatctggctgtggcatctgtcaccccattgatcaccaggcttggttcggctgatctgactggctaggcgggtgtccccttcctccctcactgctccatgtatgtccctcccaaagctgtgcactcagtcaaagagaacgaccatcccggatagaggaggactg--atctttggtcaagggtataggagtagctgcactcccttgc----tagaccctccaaacaagttctcaaAACAAAATTTTTaactagccagatgtggtggcatacagctgtatcccacccactcaggaggctgaggcaagaggaccacttgagccctcttgcctcagagttcacggttacagtgagctatgattgtaccaccacactccaaactgggcaacagagcaagactctgtcttaaataaataaacaa
i chlSab2.chr11             C 0 C 0
e mm10.chr10                126873519 2804 + 130694993 I
e canFam3.chr10              67324525 10204 -  69331447 I
e calJac3.chr9               77442014 5297 - 124281992 I
e nomLeu3.chr11              54784024 870 + 123690457 I

a score=1063213.000000
s hg38.chr12_GL383550v2_alt    124053 587 +    169178  
s panTro4.chr12              31361562 584 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78562176 593 - 136387465  
i ponAbe2.chr12             C 0 C 0
s rheMac3.chr11              79671813 584 - 134985053  
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80771207 584 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78723955 584 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74647449 585 - 128539186  
i chlSab2.chr11             C 0 C 0
s canFam3.chr10               2000804 487 +  69331447  
i canFam3.chr10             T 29593 I 204
e mm10.chr10                126873519 2804 + 130694993 I
e calJac3.chr9               77442014 5297 - 124281992 I
e nomLeu3.chr11              54784024 870 + 123690457 I

a score=85189.000000
s hg38.chr12_GL383550v2_alt    124640 76 +    169178 tcttagaataaaatgtaaaagactattttcacaactaggagtagacaaaaatt------------------------------------------------------------tgttaggacacggaaagcaataa
s panTro4.chr12              31362146 76 + 134246214 tcttagaataaaatgtaaaagactattttcacaactaggagtagacaaaaatt------------------------------------------------------------tgttaggacacagaaagcaataa
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78562769 76 - 136387465 tcttagaataaaatgtaaaagattattttcacaactaggagtagacaaaaatt------------------------------------------------------------tgttaggacacagaaagaaataa
i ponAbe2.chr12             C 0 C 0
s rheMac3.chr11              79672397 83 - 134985053 tcttagaataaaatgtaaaagac------------------------------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-----------------------
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80771791 76 - 137757926 tcttagaataaaatgtaaaagactattttcacaactaggagtagacaaaaatt------------------------------------------------------------tgttaggacacagaaatcaataa
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78724539 76 - 132286798 tcttagaataaaatgtaaaagactaTTTTCACAACTAGGAGTAGACAAAAATG------------------------------------------------------------TGTTAGGACACAGAAATCAATAA
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74648034 76 - 128539186 tcttagaataaaatgtaaacgactattttcacaactaggagtagacaaaaatt------------------------------------------------------------tgttaggacacagaaatcaataa
i chlSab2.chr11             C 0 C 0
e mm10.chr10                126873519 2804 + 130694993 I
e canFam3.chr10               2001291 204 +  69331447 I
e calJac3.chr9               77442014 5297 - 124281992 I
e nomLeu3.chr11              54784024 870 + 123690457 I

a score=283146.000000
s hg38.chr12_GL383550v2_alt    124716 165 +    169178 ccacaaaatgtttttaattggta-------------------------------------------------aattaaacttcaaaattaaagaactctgctcattgaaaatgttaagaacatgaataggcaagccacagactggaagaaaatattcatg----aaacatttatctgatt-aaaaaaacttttaagtgaaaatacaaaggctttttata
s panTro4.chr12              31362222 169 + 134246214 ccacaaaatgtttttaattggta-------------------------------------------------aattaaacttcaaaattaaagacctctgctcattgaaaatgttaagaacatgaataggcaagccacagactggaagaaaatattcatgaaacaaacatttatctgatt-aaaaaaacttttaagtgaaaatacaaaggctttttata
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78562845 165 - 136387465 cgacaaaatgtttttaattggta-------------------------------------------------aattaaacttcaaaattaaagacctctgctcactgaaaatgttaagaatatgaataggcaagccacagactggaagaaaatattcatg----aaacatttatctgata-aaaaaaacttttaagtgaaaatacaaaggctttttata
i ponAbe2.chr12             C 0 C 0
s rheMac3.chr11              79672480 162 - 134985053 -----------------------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn------------------------------cattgaaaatgttaagaatatgaataggcaagccacagattggaagaaaatattcatg----aaacatttatctgatacaaaaaaacttttaagtgaaaatagaaaggttttttgta
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80771867 166 - 137757926 cgataaaatggttttaattggta-------------------------------------------------aattagacttaaaaattaaagacctctgctcattgaaaatgttaagaatatgaataggcaagccacatgttggaagaaaatattcatg----aaacatttatctgatacaaaaaaacttttaagtgaaaatagaaaggttttttgta
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78724615 166 - 132286798 CGATAAAATGGTTTTAATTGGTA-------------------------------------------------AATTAGACTTAAAAATTAAAGACCTCTGCTCACTGAAAATGTTAAGAATATGAATAGGCAAgccacagattggaagaaaatattcatg----aaacatttatctaatacaaaaaaacttttaagtgaaaatagAAAGGTTTTTTGta
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74648110 166 - 128539186 caataaaatggttttaattggta-------------------------------------------------aattagacttaaaaattaaagacctctgctcattgaaaatgttaagaatatgaataggcaagccacagattggaagaaaatattcatg----aaacatttatctgatacaaaaaaacttttaagtgaaaatagaaaggttttttata
i chlSab2.chr11             C 0 C 0
s canFam3.chr10               2001495 152 +  69331447 ccataaagtgtttctatgtgcta-------------------------------------------------aattagacttc---attaaagacttttgcccactgaaaatattaagaaaataaataggcagacatcatactggaagaaaatattcatt-----------tgtctgaca----aggactctcacatgaaaatataaagcctttctata
i canFam3.chr10             I 204 C 0
e mm10.chr10                126873519 2804 + 130694993 I
e calJac3.chr9               77442014 5297 - 124281992 I
e nomLeu3.chr11              54784024 870 + 123690457 I

a score=2305067.000000
s hg38.chr12_GL383550v2_alt    124881 902 +    169178  
s panTro4.chr12              31362391 901 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78563010 906 - 136387465  
i ponAbe2.chr12             C 0 C 0
s rheMac3.chr11              79672642 994 - 134985053  
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80772033 900 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78724781 900 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74648276 902 - 128539186  
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77447311 890 - 124281992  
i calJac3.chr9              I 5297 C 0
s canFam3.chr10               2001647 838 +  69331447  
i canFam3.chr10             C 0 C 0
e mm10.chr10                126873519 2804 + 130694993 I
e nomLeu3.chr11              54784024 870 + 123690457 I

a score=1832727.000000
s hg38.chr12_GL383550v2_alt    125783 575 +    169178  
s panTro4.chr12              31363292 575 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78563916 574 - 136387465  
i ponAbe2.chr12             C 0 C 0
s rheMac3.chr11              79673636 573 - 134985053  
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80772933 573 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78725681 573 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74649178 571 - 128539186  
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77448201 578 - 124281992  
i calJac3.chr9              C 0 C 0
s mm10.chr10                126876323 483 + 130694993  
i mm10.chr10                I 2804 I 9777
s canFam3.chr10               2002485 593 +  69331447  
i canFam3.chr10             C 0 C 0
e nomLeu3.chr11              54784024 870 + 123690457 I

a score=1339037.000000
s hg38.chr12_GL383550v2_alt    126358 504 +    169178  
s panTro4.chr12              31363867 504 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78564490 504 - 136387465  
i ponAbe2.chr12             C 0 C 0
s rheMac3.chr11              79674209 500 - 134985053  
i rheMac3.chr11             C 0 I 608
s macFas5.chr11              80773506 500 - 137757926  
i macFas5.chr11             C 0 I 553
s papAnu2.chr11              78726254 593 - 132286798  
i papAnu2.chr11             C 0 I 1
s chlSab2.chr11              74649749 500 - 128539186  
i chlSab2.chr11             C 0 I 1289
s calJac3.chr9               77448779 498 - 124281992  
i calJac3.chr9              C 0 I 1
s canFam3.chr10               2003078 514 +  69331447  
i canFam3.chr10             C 0 C 0
e mm10.chr10                126876806 9777 + 130694993 I
e nomLeu3.chr11              54784024 870 + 123690457 I

a score=-1107.000000
s hg38.chr12_GL383550v2_alt    126862 1 +    169178 -A
s panTro4.chr12              31364371 1 + 134246214 -A
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78564994 1 - 136387465 -A
i ponAbe2.chr12             C 0 C 0
s canFam3.chr10               2003592 1 +  69331447 C-
i canFam3.chr10             C 0 C 0
e mm10.chr10                126876806 9777 + 130694993 I
e calJac3.chr9               77449277 1 - 124281992 I
e chlSab2.chr11              74650249 1289 - 128539186 I
e papAnu2.chr11              78726847 1 - 132286798 I
e macFas5.chr11              80774006 553 - 137757926 I
e rheMac3.chr11              79674709 608 - 134985053 I
e nomLeu3.chr11              54784024 870 + 123690457 I

a score=2300.000000
s hg38.chr12_GL383550v2_alt    126863 1 +    169178 T
s panTro4.chr12              31364372 1 + 134246214 T
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78564995 1 - 136387465 T
i ponAbe2.chr12             C 0 C 0
s rheMac3.chr11              79675317 1 - 134985053 T
i rheMac3.chr11             I 608 C 0
s macFas5.chr11              80774559 1 - 137757926 T
i macFas5.chr11             I 553 C 0
s papAnu2.chr11              78726848 1 - 132286798 t
i papAnu2.chr11             I 1 I 548
s chlSab2.chr11              74651538 1 - 128539186 T
i chlSab2.chr11             I 1289 C 0
s calJac3.chr9               77449278 1 - 124281992 T
i calJac3.chr9              I 1 C 0
s canFam3.chr10               2003593 1 +  69331447 C
i canFam3.chr10             C 0 C 0
e mm10.chr10                126876806 9777 + 130694993 I
e nomLeu3.chr11              54784024 870 + 123690457 I

a score=717513.000000
s hg38.chr12_GL383550v2_alt    126864 282 +    169178 TCATTCTCCCAACCACTGCATGA-AAAGGGACTCAATCTGAAGA---AAAAATAGACATTGTACCcattcaataagtatttattaaacactcactgtctactatgtgctgatgtaggcaccagggatacaggaaggaccaacatgagctgagtctttgtcaccatggggaacagcttcatcaaggaggaagtgcagggtgatctggg-gtatgtaatacagcatatatttgaggatatataacctgtgttgagacccaggttggaggctcaagaaaaaatgtccaga
s panTro4.chr12              31364373 282 + 134246214 TCATTCTCCCAACCACTGCATGA-AAACGGACTCAATCTGAAGA---AAAAATAGACATTGTACCcattcaataagtatttattaaacactcactgtctactatgtgctgatgtaggcaccagggatacaggaaggaccaacatgagctgagtctttgtcaccatggggaacagcttcatcaaggaggaagtgcagggtgatctggg-gtatgtaatacagcatatatttgaggatatataacctgtgttgagacccaggttggaggctcaagaaaaaatgtccaga
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78564996 282 - 136387465 TCATTCTCCCAACCATTGCATGA-AAAGGGACTCAATCTGAAGA---AAAAATAGACATTGTactcattcaataagtatttattaaacactcactgtctattatgtgctgatgtaggcaccagggatacaggaaggaccaacatgagctgagtctttgtcaccatggggaacagcttcatcaaggaggaagtgcagggtgatctggg-gtatgtaatacagcatatatttgaggatatataacctgtgttgagacccaggttggaggctcaagaaaaaatgtccaga
i ponAbe2.chr12             C 0 C 0
s rheMac3.chr11              79675318 284 - 134985053 TCATTCTCCCAACCACTGCATGA-AAAGGGACTCAATGTGAAGACAAAAAAATAGACACTGTactcattcaataagtatttattaaacactcgctgtctgtcatgtgctgatgtaggcaccagggatacaggaaggaccaacaagggctgagtctttgtcaccatagggaacagcttcatcaaggaagaagtgcaggatgatctggg-gtgtgtaatacagcatgtatttgaggttatattacctgtgttaagacccaggttggaagc-caagaaaaaatgtccaga
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80774560 283 - 137757926 TCATTCTCCCAACCACTGCATGA-AAAGGGACTCAATGTGAAGA-AAAAAAATAGACACTGTactcattcaataagtatttattaaacactcactgtctgtcatgtgctgatgtaggcaccagggatacaggaaggaccaacaagggctgagtctttgtcaccatagggaacagcttcatcaaggaagaAGTGCAGGATGATCTGGG-GTGTGTAATACAGCATGTATTTGAGGTTATATTACCTGTGTTGAgacccaggttggaagc-caagaaaaaatgtccaga
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78727397 284 - 132286798 TCATTCTCCCAACCACTGCATGA-AAAGGGACtcaatgtgaagaaaaaaaaatagacactgtactcattcaataagtatttattaaacactCACTGTCTGTCATGTGCTGATGTAGGCACCAGGGATACAGGAAGGACCAACAAGGGCTGAGTCTTTGTCACCATAGGGAACAGCTTCATCAAGGAAGAAGTGCAGGATGATCTGGG-GTGTGTAATACAGCATGTATTTGAGGTTATATTACCTGTGTTGAGACCCAGGTTGGAAGC-CAAGAAAAAATGTCcaga
i papAnu2.chr11             I 548 C 0
s chlSab2.chr11              74651539 283 - 128539186 TCATTCTCCCAACCACTGCATGA-AAAGGGACTCAATGCGAAGA-AAAAAAATAGACATTGTactcattcaataagtatttattaaacacccactatctgtcatgtgctgatgtaggcaccagggatacaagaaggaccaacaagggctgagtctttgtcaccatagggAACAGCTTCATCAAGGAGGAAGTGCAGGATGATCTGGG-GTGTGTAATACAGCATATATTTGAGGTTATATTACCTGTGATGAgacccaggttggaggc-caagaaaaaatgtccaga
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77449279 283 - 124281992 TCATTCTCCAAACCACTGCATGA-GGAGAGACTCAATCTAAAGA--AAAAAATAGATATTGcactcattcaataagtatttattaaacactcactgtctattgtgtactgatgtaggcaccagggacacaggagaaaacaacatgggctgagtctttgtcaccatggGCAACAGCTGCATCAAGGAGGAAGTGCAGGGTGATCTGGG-GTGTGTAATACAGCATATATTTGAGGATATATAACCTGGGTTGAGACCCAAGTTTAAGGCTCAAGAAAAAATGTCCAGA
i calJac3.chr9              C 0 I 10284
s canFam3.chr10               2003594 224 +  69331447 TCATTCTGT-AACCACTGCATGAGGAAGAGAGTCAATCTGGGGA----AAAATAAACATTGcactcattcagtaaatatttatcaagtattcactgtttattatgtactgatgcaggtagtaggagcgctgaagtgaccaacatggaTTGGACTCTTATCactgggggcga-----tccaaaaggaaaaaatatggggtgatttgggaatatgtaagatggc-------------------------------acccagctcaga----------------------
i canFam3.chr10             C 0 C 0
e mm10.chr10                126876806 9777 + 130694993 I
e nomLeu3.chr11              54784024 870 + 123690457 I

a score=106949.000000
s hg38.chr12_GL383550v2_alt    127146 49 +    169178 aaaagtaacatttaaactgaaacctggagtatgaggaggagatagcaag
s panTro4.chr12              31364655 49 + 134246214 aaaagtaacatttaaactgaaacctggagtatgagcaggagatagcaag
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78565278 49 - 136387465 aaaagtaacatttaaactgaaacctggagtatgaggaggagatagcaag
i ponAbe2.chr12             C 0 C 0
s rheMac3.chr11              79675602 49 - 134985053 aaaagtaacatttaaactgaaacctggagtacgaggaggagatagcaag
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80774843 49 - 137757926 aaaagtaacatttaaactgaaacctggagtacgaggaggagatagcaag
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78727681 49 - 132286798 aaaagtaacatttaaactGAAACCTGGAGTACGAGGAGGAGATAGCAAG
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74651822 49 - 128539186 aaaagtaacatttaaactgaaacctggagtatgaggaggagatagcaag
i chlSab2.chr11             C 0 C 0
s canFam3.chr10               2003818 46 +  69331447 gaaagtgacatat-aactgaggcct-gagggtgaggagg-ggtagcaag
i canFam3.chr10             C 0 T 21475
e mm10.chr10                126876806 9777 + 130694993 I
e calJac3.chr9               77449562 10284 - 124281992 I
e nomLeu3.chr11              54784024 870 + 123690457 I

a score=5264046.000000
s hg38.chr12_GL383550v2_alt    127195 2953 +    169178  
s panTro4.chr12              31364704 2959 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78565327 2962 - 136387465  
i ponAbe2.chr12             C 0 I 1715
s rheMac3.chr11              79675651 2940 - 134985053  
i rheMac3.chr11             C 0 I 2694
s macFas5.chr11              80774892 2942 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78727730 2949 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74651871 2921 - 128539186  
i chlSab2.chr11             C 0 I 2709
e mm10.chr10                126876806 9777 + 130694993 I
e canFam3.chr10               2003864 21475 +  69331447 T
e calJac3.chr9               77449562 10284 - 124281992 I
e nomLeu3.chr11              54784024  870 + 123690457 I

a score=1293.000000
s hg38.chr12_GL383550v2_alt    130148 5 +    169178 tttat
s panTro4.chr12              31367663 5 + 134246214 tttAT
i panTro4.chr12             C 0 C 0
s macFas5.chr11              80777834 5 - 137757926 cctgt
i macFas5.chr11             C 0 I 2704
s papAnu2.chr11              78730679 5 - 132286798 cctgt
i papAnu2.chr11             C 0 I 2698
e mm10.chr10                126876806 9777 + 130694993 I
e canFam3.chr10               2003864 21475 +  69331447 T
e calJac3.chr9               77449562 10284 - 124281992 I
e chlSab2.chr11              74654792 2709 - 128539186 I
e rheMac3.chr11              79678591 2694 - 134985053 I
e nomLeu3.chr11              54784024 870 + 123690457 I
e ponAbe2.chr12              78568289 1715 - 136387465 I

a score=90047.000000
s hg38.chr12_GL383550v2_alt    130153 1052 +    169178  
s panTro4.chr12              31367668 1059 + 134246214  
i panTro4.chr12             C 0 I 642
e mm10.chr10                126876806 9777 + 130694993 I
e canFam3.chr10               2003864 21475 +  69331447 T
e calJac3.chr9               77449562 10284 - 124281992 I
e chlSab2.chr11              74654792 2709 - 128539186 I
e papAnu2.chr11              78730684 2698 - 132286798 I
e macFas5.chr11              80777839 2704 - 137757926 I
e rheMac3.chr11              79678591 2694 - 134985053 I
e nomLeu3.chr11              54784024  870 + 123690457 I
e ponAbe2.chr12              78568289 1715 - 136387465 I

a score=0.000000
s hg38.chr12_GL383550v2_alt    131205 6 +    169178 GATAAG
e mm10.chr10                126876806 9777 + 130694993 I
e canFam3.chr10               2003864 21475 +  69331447 T
e calJac3.chr9               77449562 10284 - 124281992 I
e chlSab2.chr11              74654792 2709 - 128539186 I
e papAnu2.chr11              78730684 2698 - 132286798 I
e macFas5.chr11              80777839 2704 - 137757926 I
e rheMac3.chr11              79678591 2694 - 134985053 I
e nomLeu3.chr11              54784024 870 + 123690457 I
e ponAbe2.chr12              78568289 1715 - 136387465 I
e panTro4.chr12              31368727 642 + 134246214 I

a score=6769.000000
s hg38.chr12_GL383550v2_alt    131211 96 +    169178 atatatatatatacacatacatatatacatatatatatatatatatatatatac--acacatatatacacataTCACTCTTatcatctggctggctgg
s ponAbe2.chr12              78570004 98 - 136387465 atatatatatacacacacacatatatatacacacatacacatatatatatacacctacacatatatatatatctcacttttatcatctggctggctgg
i ponAbe2.chr12             I 1715 C 0
e mm10.chr10                126876806 9777 + 130694993 I
e canFam3.chr10               2003864 21475 +  69331447 T
e calJac3.chr9               77449562 10284 - 124281992 I
e chlSab2.chr11              74654792 2709 - 128539186 I
e papAnu2.chr11              78730684 2698 - 132286798 I
e macFas5.chr11              80777839 2704 - 137757926 I
e rheMac3.chr11              79678591 2694 - 134985053 I
e nomLeu3.chr11              54784024 870 + 123690457 I
e panTro4.chr12              31368727 642 + 134246214 I

a score=175462.000000
s hg38.chr12_GL383550v2_alt    131307 671 +    169178  
s panTro4.chr12              31369369 681 + 134246214  
i panTro4.chr12             I 642 C 0
s ponAbe2.chr12              78570102 681 - 136387465  
i ponAbe2.chr12             C 0 C 0
e mm10.chr10                126876806 9777 + 130694993 I
e canFam3.chr10               2003864 21475 +  69331447 T
e calJac3.chr9               77449562 10284 - 124281992 I
e chlSab2.chr11              74654792 2709 - 128539186 I
e papAnu2.chr11              78730684 2698 - 132286798 I
e macFas5.chr11              80777839 2704 - 137757926 I
e rheMac3.chr11              79678591 2694 - 134985053 I
e nomLeu3.chr11              54784024 870 + 123690457 I

a score=1350290.000000
s hg38.chr12_GL383550v2_alt    131978 768 +    169178  
s panTro4.chr12              31370050 764 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78570783 774 - 136387465  
i ponAbe2.chr12             C 0 C 0
s rheMac3.chr11              79681285 770 - 134985053  
i rheMac3.chr11             I 2694 C 0
s macFas5.chr11              80780543 770 - 137757926  
i macFas5.chr11             I 2704 C 0
s papAnu2.chr11              78733382 775 - 132286798  
i papAnu2.chr11             I 2698 C 0
s chlSab2.chr11              74657501 775 - 128539186  
i chlSab2.chr11             I 2709 C 0
e mm10.chr10                126876806 9777 + 130694993 I
e canFam3.chr10               2003864 21475 +  69331447 T
e calJac3.chr9               77449562 10284 - 124281992 I
e nomLeu3.chr11              54784024 870 + 123690457 I

a score=166043.000000
s hg38.chr12_GL383550v2_alt    132746 67 +    169178 TAACCACAAAGAGCCTTTTTAAGATATTCATCATGCATTTTACATTTTAATGTCATTACTCCTCCAT
s panTro4.chr12              31370814 67 + 134246214 TAACCACAAAGAGCCTTTTTAAGATATTCATCATGCATTTTACATTTTAATGTCATTTCTCCTCCAT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78571557 67 - 136387465 TAACCACAAAGAGCCTTTTTAAGATATTCATCATGCATTTTACATTTTAATGTCATTACTCCTCCAT
i ponAbe2.chr12             C 0 C 0
s rheMac3.chr11              79682055 67 - 134985053 TAACCACAAAGAGCCTTTTTAAGATATTCATCATGCATTTTACATTTTAATGTCATTACTCCCCCAT
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80781313 67 - 137757926 TAACCACAAAGAGCCTTTTTAAGATATTCATCATGCATTTTACATTTTAATGTCATTACTCCCCCAT
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78734157 67 - 132286798 TAACCACAAAGAGCCTTTTTAAGATATTCAtcatgcattttacattttaatgtcatTACTCCCCCAT
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74658276 67 - 128539186 TACCCACAAAGAGCCTTTTTAAGATATTCATCATGCATTTTACATTTTAATGTCATTACTCCCCCAT
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77459846 67 - 124281992 TAACCACAAAGAGTCTTTTTAAGATATTCATCATACATCTTATATTTTAATGTCCTTACTCCCCCAT
i calJac3.chr9              I 10284 I 297
e mm10.chr10                126876806 9777 + 130694993 I
e canFam3.chr10               2003864 21475 +  69331447 T
e nomLeu3.chr11              54784024 870 + 123690457 I

a score=366500.000000
s hg38.chr12_GL383550v2_alt    132813 158 +    169178 AGAAAAGGTCATAAATAATGTCCACCTAATAAAAAAGAATCTGTCATGTCTTTAATGCAGAAACAATTTATCACATGCTTTCACATGTAAACACAATAGGAATGAAGAAACAGCATGAAGTAATTTTAGAGTTGAATTATATCATTATTGAATTTTTT
s panTro4.chr12              31370881 158 + 134246214 AGAAAAGGTCATAAATAATGTCCACCTAATAAAAAAGAATCTGTCATATCTTTAATGCAGAAACAATTTATCACATGCTTTCACATGTAAACACAATAGGAATGAAGAAACAGCATGAAGTAATTTTAGAGTTGAATTATATCATTATTGAATTTTTT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78571624 158 - 136387465 AGAAAAGGTCATAAATAATGCCCACCTAATAAAAAAGAATCTGTCATATCTTTAATGCAGAAACAATTTGTCACATGCTTTCACATGTAAACACAATAGAAATGAAAAAACAGCATGAAGTAATTTTAGAGTTGAATTAGATCATTATTGAATTTTTt
i ponAbe2.chr12             C 0 I 1845
s rheMac3.chr11              79682122 158 - 134985053 AGAAAAGGTCATAAATAATGCCCACCTAATAAAAAAGAATCTGTCATATCTTTAATGCAGAAACAATTTATTGCATGCTTTCACATGTAAACACAATAGGAATGAAGAAACAGCATGAAGTAATTTTAGAGTTGAATTATATCATTATTCAATTTTTT
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80781380 158 - 137757926 AGAAAAGGTCACAAATAATGCCCACCTAATAAAAAAGAATCTGTCATATCTTTAATGCAGAAACAATTTATTGCATGCTTTCACATGTAAACACAATAGGAATGAAGAAACAGCATGAAGTAATTTTAGAGTTGAATTATATCATTATTCAATTTTTT
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78734224 158 - 132286798 AGAAAAGGTCATAAATAATGCCCACCTAATAAAAAAGAATCTGTCATATCTTTAATGCAGAAACAATTTATCGCATGCTTTCACATGTAAACACAATAGGAATGAAGAAACAGCATGAAGTAATTTTAGAGTTGAATTATAtcattattcaatttttt
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74658343 155 - 128539186 AGAAAAGGTCATAAATAATGCCCACCTAATAAAAAAGAATCTGTCATATCTTTAATGCAGAAACAATTTATCACATGCTTTCACATGTAAACACAATAGAAATGAAGAAACAGCATGAAGTAATTTTAGAGTTGAATTAT---ATTATTCAATTTTTT
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77460210 151 - 124281992 agaaaaTATTACAAATAATGCCCATCTAATGAAAAAGAATCTGTCATATCTTTGATGCAGAAACAACTTATCACATGCTTCCACATGTAAACACAATAGGAATAAAGAAA---CATGAAGTAATTTTAGACTTAAATTAT---ATAATTCAATTTTT-
i calJac3.chr9              I 297 C 0
e mm10.chr10                126876806 9777 + 130694993 I
e canFam3.chr10               2003864 21475 +  69331447 T
e nomLeu3.chr11              54784024 870 + 123690457 I

a score=4618.000000
s hg38.chr12_GL383550v2_alt    132971 9 +    169178 TTTAAAGTA
s panTro4.chr12              31371039 9 + 134246214 TTTTAAGTA
i panTro4.chr12             C 0 C 0
s rheMac3.chr11              79682280 9 - 134985053 TAAAAAATA
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80781538 9 - 137757926 TTAAAAATA
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78734382 9 - 132286798 ttaaaaata
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74658498 8 - 128539186 TAAAAAAT-
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77460361 9 - 124281992 TAAACATTA
i calJac3.chr9              C 0 C 0
e mm10.chr10                126876806 9777 + 130694993 I
e canFam3.chr10               2003864 21475 +  69331447 T
e nomLeu3.chr11              54784024 870 + 123690457 I
e ponAbe2.chr12              78571782 1845 - 136387465 I

a score=1065459.000000
s hg38.chr12_GL383550v2_alt    132980 471 +    169178 GCAGATTTTTCAAAAAAA-GTATACTTTAAACATAATTATAACTCTTCAAAAAATCTTCTACTCCTTTTTCA-TTATATACAAATAATTTGTCTACCAGCTTTGGTTTTGGATTATTTTCTCTACTCAGTACTCTGATTTAGTGTAATGTCTGAAGTGTTGGTGCCTTAGTTATTTCTACTCTGAATTCTCTGATATTTACATA-----------------------------GTTTACTGCATCTGCAAAATTATATTTTAGTATAAACTCTCTGGTATTTTT-TAAGCTGTAGTTATTAAAAAAATGTTTTTCCAAATTTATTACATTTGCCGGGTTTTTCTTCAATATAAATTCTTTGATGTTGAACAAAGTTTAAGCAACTGCTTCAGGCTCTTCTTGTAGTAAAAATGTGTACAATAAGATCTGTGATACAAGTAAAGGTGCTACAACCTTCTTTATATCTATAATGTT-GTCTTCAAAATACATAGTTTTCTTCACTT
s panTro4.chr12              31371048 472 + 134246214 GCAGATTTTTCAAAAAAAAGTATACTTTAAACGTAATTATAACTCTTCAAAAAATCTTCTACTCCTTTTTAA-TTATATGCAAATAATTTGTCTACCAGCTTTGGTTTTGGATTATTTTCTCTACTCAGTACTCTGATTTAGTGTAATGTCTGAAGTGTTGGTGCCTTAGTTATTTCTACTCTGAATTCTCTGATATTTACATA-----------------------------GTTTACTGCATCTGCAAAATTATATTTTAGTATAAACTCTCTGGTATTTTT-TAAGCTGTAGTTATTGAAAAAATGTTTTTCCAAATTTATTACATTTGCTGGGTTTTTCTTCAATATAAATTCTTTGATGTTGAACAAAGTTTAAGCAACTGCTTCAGGCTCTTCTTGTAGTAAAAATGTGTACAATAAGATCTGTGATACAAGTAAAGGTGCTACAACCTTCTTTATATCTATAATGTT-GTCTTCAAAATACATACTTTTCTTCACTT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78573627 466 - 136387465 GCAGATTTTTCAAAAAAA-GTATGCTTTAAATGTAATTATAACTCTTCAAAAAATCTTCTACTCCTTTTTAA-TTATATACAAATAATTTGTCTACCAGCTTTGGTTTTGGATTATTTTCTCTACTCAGTACTCTGATTTAGTGTAATGTCTGAAGTGTTGGTGCCTTAGTTATTTCTACTCTGAATTCTCTGATATTTACATA-----------------------------GTTTACTGCATCTGCAAAATTATATTTTAGTATAAA--CTCTGGTATTTTT-TAAGCTGTAGTTATTGAAAAAATGTTTTTCCAAATTTATTACATTTGCAAGGTTTTTCTTCAATATAAATTCTTTGATGTTGAATGAAGTTTAAGCAACTGCTTCAGGC---TCTTGTAGTAAAAATGTGTACAATAAGATCTGTGATACAAGTAAAGGTGCTACAACCTTCTTTATATCTATAATGTT-GCCTTCAAAATATATACTTTTCTTCACTT
i ponAbe2.chr12             I 1845 C 0
s rheMac3.chr11              79682289 472 - 134985053 GCAGATTTTTCAAAAAA--GTATACTTTAAATGTAATCATAACTCTTCAAAAAATATTCTACTCCTTTTTAAGTTATATACAAATAATTTGTCTACCAACTTTAGTTTTGGATTATTTTCTCTACTCAGTACTCTGATTTAGTGTAATGTCTGAACTGTCGGTGCCTTAGTTATTTCTACTGTGAATTCTCCAATATTTACATA-----------------------------GTTTACGGCATCTGCAAAATTATATTTTAATGTAAACTCTCTGGTATTTTT-TTAGCTGTAGTTATTGAAAAAATGTTTTTCCAAATTTATTACATTTGTGGGGTTCTTCTTCAATATAAATTATTTGATGTTGAACAAAGTTTAAGCAACTGCTTTAGGCTTTTCCTGTAGTAAAAATATGTGCAATAAGATCTGTGATACAAGTAAAGGTGCTACAACCTTCTTTATATCTATAATGTTTGCCTTCAAAATACATACTTTTCTTCACTT
i rheMac3.chr11             C 0 I 308
s macFas5.chr11              80781547 472 - 137757926 GCAGATTTTTCAAAAAA--GTATACTTTAAATGTAATCATAACTCTTCAAAAAATATTCTACTCCTTTTTAAGTTATATACAAATAATTTGACTACCAACTTTAGTTTTGGATTATTTTCTCTACTCAGTACTCTGATTTAGTGTAATGTCTGAACTGTCGGTGCCTTAGTTATTTCTACTGTGAATTCTCCAATATTTACATA-----------------------------GTTTACGGCATCTGCAAAATTATATTTTAATGTAAACTCTCTGGTATTTTT-TTAGCTGTAGTTATTGAAAAAATGTTTTTCCAAATTTATTACATTTGTGGGGTTCTTCTTCAATATAAATTATTTGATGTTGAACAAAGTTTAAGCAACTGCTTTAGGCTTTTCCTGTAGTAAAAATATGTGCAATAAGATCTGTGATACAAGTAAAGGTGCTACAACCTTCTTTATATCTATAATGTTTGCCTTCAAAATACATACTTTTCTTCACTT
i macFas5.chr11             C 0 I 308
s papAnu2.chr11              78734391 471 - 132286798 gcagatttttcaaaaaa--gtatactttaaatgtaatcataactcttcaaaaaatattcTACTCCTTTTTAagttatatacaaataatttgtCTACCAACTTTAGTTTTGGATTATTTTCTCTACTCAGTACTCTGATTTAGTGTAATGTCTGAACTGTCAGTGCCTTAGTTATTTCTACTGTGAATTCTCCAGTATTTACATA-----------------------------GTTTACGGCATctgcaaaattatattttaatgtaaactcTCTGGTAttttt-ttAGCTGTAGttattgaaaaaatgtttttccaaatttattacATTTGTGGGGTTCTTCttcaatataaattatttgatgTTGAACAAAGTTTACGCAACTGCTTTAGGCTTTTCCTGTagtaaaaatatgtacaataagaTCTGTGATACAAGTAAAGGTGCTACAACCTTCTTTATATCTATAATGTTTGCCTTCAAAATACATAC-TTTCTTCACTT
i papAnu2.chr11             C 0 I 309
s chlSab2.chr11              74658506 469 - 128539186 --AGATTTTTCAAAAAA--GTATACTTTAAATGTAATCATAACTCTTCAAAAAATATTCTACTCCTTTTTAAGTTATATACAAATAATTTGTCTACCAACTTTAGTTTTGGATTATTTTCTCTACTCAGTACTCTGATTTAGTGTAATGTCTGAACTGTCGGTGCCTTAGTTATTTCTACTGTGAATTCTCTGATATTTACATA-----------------------------GTTTACGGCATCTGCAAAATTATATTTTAATGTAAACTCTCTGGT-TTTTT-TTAGATGTAGTTACTGAAAAAATGTTTTTCCAAATTTATTACATTTGTGGGGTTTTTCTTCAATATAAATTATTTGATGTTGAACAAAGTTTAAGCAACTGCTTCAGGCTTTTCCTGTAGTAAAAATATGTACAATAAGATCTGTGATACAAGTAAAGGTGCTACAACCTTCTTTATATCTATAATGTTCGCCTTCAAAATACATACTTTTCTTCACTT
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77460370 494 - 124281992 GCATATTTTTCCAAAAAA-GTATACTTTAAATACAATTATAACTCTTCAAAAAGTCTT---CCCTTTTTTAAGTTATATACAAATAATTTGTCTACCAACTTTAGTTTTGGATTATTTTCTATATTCAGTATTCTGATTTACTGTAATGTCTGAAGTGTCAGTGCCTTAGTTATTTCTGCTATCAATTATCTGATATTAACATAGACTTAATTTTGGATTAAATATTTTTTATGTTTGCTGCATCTGCAAAATGATATTTTAACATAAACTCTCTGGTATTTTTCTAAGCTGTAGTTATTGCAAAAATGTTTTTCCAAATTTATTACATTTGCAGGGTTTTTCTTCAATATAAATTCTTTGATGTTGAACAAAGTTTGAGCAACTGCTTCAGGGTTTTCCTGTAGTAAAAATGTGTACAATAAGATCTGTGATACAAATAAAGGTACTACAACCTTCTT------TATAATGTTTGCCTTTAAAATATATACTTTTCTTCACTT
i calJac3.chr9              C 0 C 0
e mm10.chr10                126876806 9777 + 130694993 I
e canFam3.chr10               2003864 21475 +  69331447 T
e nomLeu3.chr11              54784024 870 + 123690457 I

a score=448772.000000
s hg38.chr12_GL383550v2_alt    133451 201 +    169178 TAAAAGCTTATATTTTCTGAAAAACATTTTTGACAGTAATTGCACTTACAATGCTTTCACTAAGTATGAACTCTCTGATAGTAAGATGTGAACAGATATTAATGG-CTTTTTTACATTCTTTTTGTTT-GTTA-ATTTTTTCTCAAGTATAAATGCTTTTCTGTGCAATAAGGTGTGAGGATTGGTTAAAAGTTTTGCCACATT
s panTro4.chr12              31371520 201 + 134246214 TAAAAGCTTATATTTTCTGAAAAACATTTTTGACAGTAATTGCACTTATAATGCTTTCACTAAGTATGAACTCTCTGATAGTAAGATGTGAACAGATATTAATGG-CTTTTTTACATTCTTTTTGTTT-GTTA-ATTTTTTCTCAAGTATAAATGCTTTTCTGTGCAATAAGGTGTGAGGATTGGTTAAAAGTTTTGCCACATT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78574093 202 - 136387465 TAAAAGCTTATATTTTCTGAAAAAAATTTTTGACAGTAATTGCACTTATAATGTTTTCACTAAGTATGAACTCTCTGATAGTAAGATGTGAACAGATATTAATGG-CTTTTTCACATTCTTTTTTTTTGGTTA-ATTTTTTCTCAAGTATAAATGCTTTTCTGTGCAATAAGGTGTGAGGATTGGTTAAAAGTTTTGCCACATT
i ponAbe2.chr12             C 0 C 0
s rheMac3.chr11              79683069 200 - 134985053 TAAAAGCTTATATTTTCTGAAAAAAAAATTTTACACTAATTGCACTTATAATGCTTTCACTAAGTATGAACTCTCTGATATTAAGATGTAAACAGATATTAATGG-TTTTTTTATATTCTTTTTGTTT-G-TA-AATTTTTCTCAAGTATAAATGCTTTTCTGTGCAATAAGGTGTGAGGATTGGTTAAAAGTTTTGCCACATT
i rheMac3.chr11             I 308 C 0
s macFas5.chr11              80782327 200 - 137757926 TAAAAGCTTATATTTTCTGAAAAAAAAATTTTACACTAATTGCACTTATAATGCTTTCACTAAGTATGAACTCTCTGATATTAAGATGTAAACAGATATTAATGG-TTTTTTTACATTCTTTTTGTTT-G-TA-AATTTTTCTCAAGTATAAATGCTTTTCTGTGCAATAAGGTGTGAGGATTGGTTAAAAGTTTTGCCACATT
i macFas5.chr11             I 308 C 0
s papAnu2.chr11              78735171 201 - 132286798 taaaagcttatattttctgaaaaaaatgttttacagtaATTGCACTTATAATGCTTTCACTAAGTATGAACTCTCTGATATTAAGATGTAAACAGATATTAATGgttttttttacattctttttgttt-g-ta-aatttttctCAAGTATAAATGCTTTTCTGTGCAATAAGGTGTGAGGATTGGTTAAaagttttgccacatt
i papAnu2.chr11             I 309 C 0
s chlSab2.chr11              74658975 198 - 128539186 TAAAAGCTTATATTTTCTG-AAAAATTTTTTTACAGTAATTGCACTTAT-ATGCTTTCACTAAGTATGAACTCTCTGATATTAAGATGTAAACAGATATTAATGG-TTTTTTTACATTCTTTTTGTTT-G-TA-AATTTTTCTCAAGTATAAATGCTTTTCTGTGCAAAAAGGTGTAAAGATTGGTTAAAAGTTTTGCCACATT
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77460864 200 - 124281992 TAAAAGCTTATATTTTCTAAAAAAAA-ATTTGACAGTAATTACACTTATAATGCTTTCACTAAGTATAAACTCTCTGATATTAAGATGTGAACAAATATTAATGG-CTTTTTTACATTCTTTTTGTTT-G-TACATTTTTTCTCAACTATAAATGGTTTTCTGGGCAATAAGGTGCAAAAATTGGTTAAAAGTTTCACCACATT
i calJac3.chr9              C 0 I 400
e mm10.chr10                126876806 9777 + 130694993 I
e canFam3.chr10               2003864 21475 +  69331447 T
e nomLeu3.chr11              54784024 870 + 123690457 I

a score=597383.000000
s hg38.chr12_GL383550v2_alt    133652 325 +    169178 TTTCACATTTGTAGGAGTTTTCTCCACTATGAATTATCCGACCTATAATCAAGTGTGACAACCATTTAAAGGCTTGTCACGTTCTTCACATTTCTAGGATTTCTCATCAGTATGATTTATTTTATGTTTAGAAAAGTTTGAAGTGTTGCCAAAAGCATTGTCACATCTTTCAGGTTTGTAGAATTTCTCTCCAGTATGAATTATCTTGCGTCTCTTAAGAATTGAGGATTCACTGAAGGATTTGCCACATTCTTCACACTTGGAGGTTTTCTCTTTAGTATAAATTTTCTTATGTTTAGTAAGGTTTGAGAATTGGTTAACAGCC
s panTro4.chr12              31371721 324 + 134246214 TTTCACATTTGTAGGAGTTTTCTCGACTATGAATTATCCGACCTATAATCACGTGTGACAACCATTTAAAGGCTTGTCACGTTCTTCACATTTCTAGGATTTCTCATCAGTATGATTTATTTTATGTTTAGAAAAGTTTGAAGTGTTGCCAAAAGCATTGTCACATCTTTCAGGTTTGTAGAATTTCTCTCCAGTATGAATTATCTTGCGTCTCTTAAGAATTGAGGATTTGCTGAAGGATTTGCCACATTCTTCACACTTGGAGGGTTTCTCTTTAGTATAAATTTTCTTATGTTTAGTAAGGTTTGAGAATTGGTTAAGAG-C
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78574295 324 - 136387465 TTTCACATTTGTAGGAGTTTTCTCCACTATGAATTATTCGACCTACAATCAAGTGTGACAACCATTTAAAGGCTTGTCATGTTCTTCACATTTCTAGGATTTCTCATCAGTATGATTTATTTTATGTTTAGAAAAGTTTGAAATGTTGCCAAAAGCATTGTCACATCTTTCAGGTTTGTAGAATTTCTCTCCAGTATGAATTATCTTGCGTCTCTTAAGAATTGAGGATTTGCTGAAGGATTTGCCACATTCTTCACACTTGGAGGGTTTCTCTTTAGTATAAATTTTCTTATGTTTAGTAAGGTTTGAGAATTGGTTAAAAG-C
i ponAbe2.chr12             C 0 C 0
s rheMac3.chr11              79683269 322 - 134985053 CTTCACATTTGTAATAGTTTTCTCCACTATGAATTATCCAACCTACAATCAAGTGTGACAACCATTTAAAGGCTTGTCACGTTCTTCACATTTCTAGAATTTCTCATCAGTATGATTTATTT--TGTTTAGAAAAGTTTGAAGTGTTGCCAAAAGCATTGTCACATCTTTCAGGTTTGTAGAATTTCTCTCCAGTATGAATTATCTTGTGTCTCTTATGAATTAAGGATTTGCTGAAGGATTTGCCACATTCTTCACACTTGGAGGGTTACTCTTTAGTATAAATTTTCTTGTGTTTAGTAAGGTTTGAGAATTGGTTAAGAG-C
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80782527 322 - 137757926 CTTCACATTTGTAATAGTTTTCTCCACTATGAATTATCCAACCTACAATCAAGTGTGACAACCATTTAAAGGCTTGTCACGTTCTTCACATTTCTAGAATTTCTCATCAGTATGATTTATTT--TGTTTAGAAAAGTTTGAAGTGTTGCCAAAAGCATTGTCACATCTTTCAGGTTTGTAGAATTTCTCTCCAGTATGAATTATCTTGTGTCTCTTATGAATTAAGGATTTGCTGAAGGATTTGCCACATTCTTCACACTTGGAGGGTTACTCTTTAGTATAAATTTTCTTGTGTTTAGTAAGGTTTGAGAATTGGTTAAGAG-C
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78735372 322 - 132286798 cttcacatttgtaataGTTTTCTCCACTATGAATTATCCAACCTACAATCAAGTGTGACAACCATTTAAAGGCTTGTCACGTTCTTCACATTTCTAGAATTTCTCATCAgtatgatttattt--tgtttagaaaagTTTGAAGTGTTGCCAAAAGCATTGTCACATCTTTCAGGTTTGTAgaatttctctccagtatgaattatcttgtGTCTCTTATGAATTAAGGATTTGCTGAAGgatttgccacattcttcacacttGGAGGGTTACTCTTTAGTATAAATTTTCTTGTGTTTAGTAAGGTTTGAGAATTGGTTAAGAG-C
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74659173 324 - 128539186 CTTCACATTTGTAATAGTTTTCTCCACTACGAATTATCCGACCTACAATCAAGTGTGACAACCATTTAAAGGCTTGTCACGTTCTTCACATTTCTAGGATTTCTCATCAGTATGATTTATTTTATGTTTAGAAAAGTTTGAAGTGTTGCCAAAAGCATTGTCACATCTTTCAGGTTTGCAGAATTTCTCTCCAGTATGAATTATCTTGTGTCTCTTGTGAATTAAGGATTTGCTGAAGGATTTGCCACATTCTTCACACTTGGAGGGTTTCTCTTTAGTATAAATTTTCTTATGTTTAGTAAGGTTTGAGAATTGGTTAAGAG-C
i chlSab2.chr11             C 0 C 0
e mm10.chr10                126876806 9777 + 130694993 I
e canFam3.chr10               2003864 21475 +  69331447 T
e calJac3.chr9               77461064 400 - 124281992 I
e nomLeu3.chr11              54784024 870 + 123690457 I

a score=337005.000000
s hg38.chr12_GL383550v2_alt    133977 165 +    169178 TTTGCCACATTCTTCACGTTTGTAGGGTTTCTCTCCCATATGAATTACTTATGTATAGTAAGGTGTGAGGACCAGTTAAAAAATTGGCCACACTCTTCACATTTGTAGGGTTTCTTTCCAGTA--TGAATTGTCTTATGAATAGTAAGGTGCGAGGACTGGTTAAAA
s panTro4.chr12              31372045 164 + 134246214 TTTGCCACATTCTTCACATTTGTAGGGTTTCTCTCCCATATGAATTACTTATGTATAGTAAGGTGTGAGGACCAGTTAAAAAATTGGCCACATTCTTCACATGTATAGGGTTTCTTTCCAGTA--TGAATTGTCTTAGGAATAGT-AGGTACGAGGATTGGTTAAAA
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78574619 165 - 136387465 TTTGCCACATTCTTCACATTTGTTGGGTTTCTCTCCCATATGAATTACTTATGTATAGCAAGGTGTGAGGACCAGTTAAAAAATTGGCCACATTTTTCACATTTGTAGGGTTTCTTTCCAGTA--TGAATTGTCTTATGAATAGTAAGGTGCGAGGATTGGTTAAAA
i ponAbe2.chr12             C 0 C 0
s rheMac3.chr11              79683591 167 - 134985053 TTTGCCATATTCTTCACATTTGTAGGGTTTCTCTCCCATACGAATTACTTATGTATAGTAAGGTGTGGGGACCAGTTAAAAAATTGGCCACATTCTTCACATTTGTAGGTTTTCTCTCCAGTATGTGAATTATCTTATGAATAGTAAGGTGCAAGGATTGGTTAAAA
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80782849 167 - 137757926 TTTGCCATATTCTTCACATTTGTAGGGTTTCTCTCCCATACGAATTACTTATGTATAGTAAGGTGTGGGGACCAGTTAAAAAATTGGCCACATTCTTCACATTTGTAGGTTTTCTCTCCAGTATGTGAATTATCTTATGAATAGTAAGGTGCAAGGATTGGTTAAAA
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78735694 167 - 132286798 TTTGCcatattcttcacatttgtagggtttctctcccaTACGAATTACTTATGTATAGTAAGGTGTGAGGATCAGTTAAAAAATtggccacattcttcacatttgtaggttTTCTCTCCAGTATGTGAATTATCTTATGAATAGTAAGGTGCAAGGATTGGTTAAAa
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74659497 165 - 128539186 TTTGTCATATTCTTCACATTTGTAGGGTTTCTCTCCCATACGAATTGCTCATGTGTAGTAAGGTGTGAGGACCAGTTAAAAAATTGGCCACATTCTTCACATTTGTAGGTTTTCTCTCCAGTA--TGAATTATCTTATGAATAGTAAGGTGCAAAGATTGGTTAAAA
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77461464 125 - 124281992 TTTGCCACCTTATTCACACTTGTAG---TTTTCTCCACTAC------------------------------------AAAAAATT-GCCACATTCTTCACATATGTGGGGTCTCTCTCCAGTA--TGAATTATCTTATGAACAGTAAGCTTTGAGGATTGGTTAAAA
i calJac3.chr9              I 400 I 7257
e mm10.chr10                126876806 9777 + 130694993 I
e canFam3.chr10               2003864 21475 +  69331447 T
e nomLeu3.chr11              54784024 870 + 123690457 I

a score=1081077.000000
s hg38.chr12_GL383550v2_alt    134142 496 +    169178 AACTTCGCCACATTCTTCACATTTGTAGGGTTTCTCTCCAATATGAATTATCTTATGTTTAGTAAGGCCTGAGGACCAGTTAAAGGCTTTGCCACATTCTTTACATTTGTAGGAATTGTCTTTAGTGTAAATTCTTTTATGTTGAATTAGGTGTGAAAGCATGCAAAATG-TTTGACAC-------ACATTTGAAAGATTCCTTTCTAGTATGTCTTATCTTATGTCTATTTGAATTTGAAAATTTAT--AAAAAAACTTTCACACATTTATCACATTTAAATATTTTGCTCTCATTAGTTGTCAAACACTGGTTAAGTCCATTATGACCTTTTTTGTGCACCTTACACTCATCCACACTTTTA-TAACTTTTCTTAACTGTAAATTCTAATGTTCACATTTTCCATATCTTCTCAGTATAACTTTTTGG----AAAAAAAACTTCCGTGTCCTACTCTGGCCAAAGGTCTTGGGCAAAAGAAAAACATAAAACTGGGGGTTTGGCTACCA
s panTro4.chr12              31372209 493 + 134246214 AACTTTGCCACATTCTTCACATTTGTAGGGTTTCTCTCCAATATGAATTATCTTATGTTTAGTAAGGCCTGAGGACCAGTTAAAGGCTTTGCCACATTCTTTACATTTGTAGGAAT--TCTTTAGTGTAAATTCTTTTATGTTGAATTAGGTGTGAAAGCATGCAAAATG-TTTGACAC-------ACATTTGAAAGATTCCTTTCTAGTATGTCTTATCTTATGTCTATTTGAATTTGAAAATTTAT--AAAAAAACTTTCACACATTTATCACATTTAAATATTTTGCTCTCATTAGTTGTCAAACACTGGTTAAGTCCATTATGACCTTTTTTGTGCACCTTACACTCATCCACACTTTTA-TAGCTTTTCTTAACTGTAAATTCTAATGTTCACATTTTCCATATCTTCTCGGTATAACTTTTTGG-----AAAAAAACTTCCGTGTCCTACTCTGGCCAAAGGTCTTGGGCAAAAGAAAAACATATAACTGGGGGTTTGGCTACCA
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78574784 497 - 136387465 AACTTTGCCACATTCTTCACATTTGTAGGGTTTCTCTCCAATATGAATTATCTTATGTTTAGTAAGGCCTGAGGACCAGTTAAAGGCTTTGCCACATTCTTTACATTTGTAGGAATTGTCTTTAGTGTAAATTCTTTTATGTTGAATTAGGTGTGAAAGCATGCAAAATG-TTTGACACACTCTTTACATTTGAAAAATTCCTTTCTAGTATG-----TCTTATGTCTATTTGAATTTGAAAATTTAT--AAAAAAACTTTCACACATCTATCACATTTAAATATTTTGCTCTCATTAGTTGTCAAACACTGGTTAAGTCCATTATGACCTTTTTTGTGCACCTTACACTCATCCGCACTCTTA-TAGCTTTTCTTAACTGTAAATTCTAATGTTCACATTTTCCATATCTTCTCAGTGTAACTTTTTGG-----AAAAAAACTTCCATGTCCTACTCTGGCCAAAGGTCTTGGGCAAAAGAAAAACATATAACTGGGGGTTTGGCTACTA
i ponAbe2.chr12             C 0 C 0
s rheMac3.chr11              79683758 489 - 134985053 AGCTTTGCCACATTCTTCACATTTGTAGGGTTTCTCTCCAGTATGAATTATCTTATGTTTAGTAAGGCCTGAGGACCAGTTAAAGGCTTTGCCACATTGTTTACATTTGTAGGAATTGTCTTTAGTATAAATTATTTTATGTTGAATTAGGTGTGAAAGCAGGCAAAATG-TTTGACACACTCTTTACATGTGAAAAATTCCTTTCTAGTATG------------TCTATTTGAATTTGAAATTTTATT-TAAAAAACTTTCACACATTTATCACATTTAAATATTTTGCTCTGGTTAGTTGTCAAACACTGGTTAAGTTCGTTATGACCTTTTTTGTGCACCTCACACTCATCCA-ACTTTTA-TAGCTTTTCTTAACTGTAAATTCTAATATTCACATTTTCCATATCTTCTCAGTAAAACTTTTTGG------AAAAAACTTCCATGTCCTACTCTGGCCAAAGGTCTTAGACAAAATAAAAACATATAACCAGGGGTTTGGCTACCA
i rheMac3.chr11             C 0 I 19
s macFas5.chr11              80783016 489 - 137757926 AGCTTTGCCACATTCTTCACATTTGTAGGGTTTCTCTCCAGTATGAATTATCTTAGGTTTAGTAAGGCCTGAGGACCAGTTAAAGGCTTTGCCACATTCTTTACATTTGTAGGAATTGTCTTTAGTATAAATTATTTTATGTTGAATTAGGTGTGAAAGCAGGCAAAATG-TTTGACACACTCTTTACATGTGAAAAATTCCTTTCTAGTATG------------TCTATTTGAATTTGAAATTTTATT-TAAAAAACTTTCACACATTTATCACATTTAAATATTTTGCTCTGGTTAGTTGTCAAACACTGGTTAAGTTCGTTATGACCTTTTTTGTGCACCTCACACTCATCCA-ACTTTTA-TAGCTTTTCTTAACTGTAAATTCTAATATTCACATTTTCCATATCTTCTCAGTAAAACTTTTTGG------AAAAAACTTCCATGTCCTACTCTGGCCAAAGGTCTTAGACAAAATAAAAACATATAACCAGGGGTTTGGCTACCA
i macFas5.chr11             C 0 I 12
s papAnu2.chr11              78735861 488 - 132286798 agttttgccacattcttcacatttgtagggtttctctccagtatgaattatcttatgtttagtaaggCCTGAGGACcagttaaaggctttgccacattctttacatttgtaggaATTGTCTttagtataaattattttatgttgaaTTAGGTGTGAAAGCAGGCAAAATG-TTTGACACACTCTTTACATGTGAAAAATTCCTTTCTAGTATG------------tctatttgaatttgaaattttatt-taaaaaactttcacacatttatcacatttaaatattttgctctgGTTAATTGTCAAACACTGGTTAAGTTCATTATGACCTTTTTTGTGCACCTCACACTCATCCA-ACTTTTA-TAGCTTTTCTTAACTGTAAATTCTAATATTCACATTTTCCATATCTTCTCAGTAAAAC-TTTTGG------AAAAAACTTCCATGTCCTACTCTGGCAAAAGGTCTTAGACAAAATAAAAACGTATAACCAAGGGTTTGGCTACCA
i papAnu2.chr11             C 0 I 12
s chlSab2.chr11              74659662 490 - 128539186 AGCTTTGCCACGTTCTTCACATTTGTAGGTTTTCTCTCCAGTATGAATTATCTTATGTTTAGTAAGGCCTGAGGACCAGTTAAAGGCTTTGCCACATTCTTTACATTTGCAGGAATTGTCTTTAGTATAAATTATTTTATGCTGAATTAGGTGTGAAAGCAGGCAAAATG-TTTGATACACTCTTTACATGTGAAAAATTCCTTTCTAGTATG------------TCTATTTGAATTTGAAAATTTATTAAAAAAAACTTTCACACATTTATCACATTTAAATATTTTGCTCTGGTTAGTTGTCAAACACTGGTTAAGTTCATTATGACCTTTTTTGTGCACCTCACACTCATCCA-ACTTTTA-TAGCTTTTCTTAACTGTAAATTCTAATGTTCACATTTTCCATATCTTCTCAGTAAAACTTTTTGG------AAAAAGCTTCCATGTCCTACTCTAGCCAAAGGTCTTGGACAAAATAAAAACATATAACCGGGGGTTTGGCTACCA
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77468846 480 - 124281992 ATCTTTGCCACATTCTTCACATTTGTAGGGTTTCTCTCCAGTGTGAATTCTCTTATGTTTAGTAAAAACTGAGGACTAATTGAAGGCTTTCCCACATTCTTTACATTTGTAGGAATTGTCTTTAGAATAAATTCTTTTATG-----TTAAGTATGAAAGCATGCAAAATGATTTGACACACTCTTTTCATTGGAAAGGTTTCTTTCTAGTATGTCTTATGTTATGTCTATTTTAATTTCAAAATTTA---TAAAATACTTTCACACATTTATCACATTGAAATATTTTGCTCTGGTTAGTTGTCAAACACTGGTTAAGTCCATTATGACCTTTTCTGTGCACCTTACACTCATCCACACTTTTACTTACTTTTCTTAACTGTAAATTCTCATATTCACATTTTCCATATCTTTTCAGTATAACTTTTTGAAAAAAAAAAAAACCTCTATGTCCTGCTCTGGCCAAAGGTCT-----------------------CGGGGGTTTGGCTACCA
i calJac3.chr9              I 7257 C 0
e mm10.chr10                126876806 9777 + 130694993 I
e canFam3.chr10               2003864 21475 +  69331447 T
e nomLeu3.chr11              54784024 870 + 123690457 I

a score=5072.000000
s hg38.chr12_GL383550v2_alt    134638 5 +    169178 TTTCA
s panTro4.chr12              31372702 5 + 134246214 TTTCA
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78575281 5 - 136387465 TTTCA
i ponAbe2.chr12             C 0 C 0
s macFas5.chr11              80783517 5 - 137757926 TTTGG
i macFas5.chr11             I 12 I 2
s papAnu2.chr11              78736361 5 - 132286798 TTTGG
i papAnu2.chr11             I 12 I 2
s chlSab2.chr11              74660152 5 - 128539186 TCTCA
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77469326 5 - 124281992 TCTCA
i calJac3.chr9              C 0 C 0
e mm10.chr10                126876806 9777 + 130694993 I
e canFam3.chr10               2003864 21475 +  69331447 T
e rheMac3.chr11              79684247 19 - 134985053 I
e nomLeu3.chr11              54784024 870 + 123690457 I

a score=2429169.000000
s hg38.chr12_GL383550v2_alt    134643 1022 +    169178  
s panTro4.chr12              31372707 1026 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78575286 1021 - 136387465  
i ponAbe2.chr12             C 0 C 0
s rheMac3.chr11              79684266 1066 - 134985053  
i rheMac3.chr11             I 19 C 0
s macFas5.chr11              80783524 1068 - 137757926  
i macFas5.chr11             I 2 C 0
s papAnu2.chr11              78736368 1065 - 132286798  
i papAnu2.chr11             I 2 C 0
s chlSab2.chr11              74660157 1068 - 128539186  
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77469331 1006 - 124281992  
i calJac3.chr9              C 0 I 232
e mm10.chr10                126876806 9777 + 130694993 I
e canFam3.chr10               2003864 21475 +  69331447 T
e nomLeu3.chr11              54784024  870 + 123690457 I

a score=238685.000000
s hg38.chr12_GL383550v2_alt    135665 148 +    169178 TGAGACAAGAAGTCTTCTTCCAATCTAAGGTTTTTCTAGATTGAATggttcgtggtctcaagggcttcaaggaatgaagccatggactgcagcagtgagtgttacaacttgattagagaaacgcacggaccccaagagtgtgcagcag
s panTro4.chr12              31373733 148 + 134246214 TGAGACAAGAAGTCTTCTTCCAATCTAAGGTTTttctagattgaatggttcgtggtctcaagggcttcaaggaatgaagccatggactgcagcagtgagtgttacaacttgattagagaaatgcacggaccccaagagtgtgcagcag
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78576307 148 - 136387465 TGAGACAAGAAGTCTTCTTCCAATCTAAggtttttctcgattgaagggttcgtggtctcacgggcttcaaggaataaagccgtggactgcagcagtgagaattacaacttgattagagaaacgcacggaccccaagagtgtgcagcag
i ponAbe2.chr12             C 0 C 0
s rheMac3.chr11              79685332 147 - 134985053 TGAGATAAGAAGTCTTCTTCTGATAC-Aggtttttttcgattgaagcattcatggtctcatgggcttcaaggaatgaagccgtggaccactgcaacaagtgttacagctcgattacagaaatgcacagacccaaagcgtgtgcagcag
i rheMac3.chr11             C 0 I 292
s macFas5.chr11              80784592 147 - 137757926 TGAGATAAGAAGTCTTCTTCTGATAC-Aggtttttttcgattgaagcattcatggtctcatgggcttcaaggaatgaagccgtggaccactgcagcaagtgttacagctcgattacagaaatgcacagacccaaagcgtgtgcagcag
i macFas5.chr11             C 0 I 292
s papAnu2.chr11              78737433 147 - 132286798 tgaGATAAGAAGTCTTCTTCTGATAC-AGGTTTTTCTCGATTGAAGCATTCATGGTCTCACGGGCTTCAaggaatgaagccgtggaccacTGCAGCAAGTGTTACAGCTCGATTAGAGAAACGCACAGACCCAAAGCGTGTGCagcag
i papAnu2.chr11             C 0 I 296
s chlSab2.chr11              74661225 147 - 128539186 TGAGACAAGAAGTCTTCTtccgatat-aggtttttctcgattgaagcattcatggtctcacgggcttcaaggaatgaagtcgtggaccacagcagcaagtgttacagctcgattagagaaacgcacagacccaaagagtgtgcagcag
i chlSab2.chr11             C 0 I 329
e mm10.chr10                126876806 9777 + 130694993 I
e canFam3.chr10               2003864 21475 +  69331447 T
e calJac3.chr9               77470337 232 - 124281992 I
e nomLeu3.chr11              54784024 870 + 123690457 I

a score=1531474.000000
s hg38.chr12_GL383550v2_alt    135813 865 +    169178  
s panTro4.chr12              31373881 864 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78576455 868 - 136387465  
i ponAbe2.chr12             C 0 C 0
s rheMac3.chr11              79685771 870 - 134985053  
i rheMac3.chr11             I 292 C 0
s macFas5.chr11              80785031 870 - 137757926  
i macFas5.chr11             I 292 C 0
s papAnu2.chr11              78737876 872 - 132286798  
i papAnu2.chr11             I 296 C 0
s chlSab2.chr11              74661701 855 - 128539186  
i chlSab2.chr11             I 329 C 0
e mm10.chr10                126876806 9777 + 130694993 I
e canFam3.chr10               2003864 21475 +  69331447 T
e calJac3.chr9               77470337 232 - 124281992 I
e nomLeu3.chr11              54784024 870 + 123690457 I

a score=722708.000000
s hg38.chr12_GL383550v2_alt    136678 352 +    169178 tctttgagcatctttaagacaattattttaaagtttttgtctagtaaatctgccaacaggtctttttcagggacagtttctgtttgtttgcttttttccatagaatgggccacaatttcctg------------------tttctatctcttgtgattt---ttgttgaaaactgtacattttaatctaataatctggtaagtctaaaagtcagatactc---tctctccagggtt---tgctgttttgtgtttttattttttttgt----------------aagctatccctgtgctga-ggatcagt-ctgaggtataaaattagg----gtg-ttttcagagcttgcaccttcccctgcacatgtactgtaactttctaatttctcttg----------------------------------------------------tatatgagg
s panTro4.chr12              31374745 352 + 134246214 tctttgagcatctttaagacagttattttaaagtttttgtctagtaaatctgccaacaggtctttttcagggacagtttctgtttgtttgcttttttccatagaatgggccataatttcctg------------------tttctatctcttgtgattt---ttgttgaaaactggacattttaatctaataatctggtaagtctaaaagtcagatactc---tctctccagggtt---tgctgttttgtgtttttatttttgttgt----------------aagctatccctgtgctga-gcatcagt-ctgaggtataaaattagg----gtg-ttttcagagcttgcaccttcccctgcacatgtactgtaactttctaatttctcttg----------------------------------------------------tatatgagg
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78577323 352 - 136387465 tctttgagcatctttaagacagttattttaaagtttttatctagtaaatctgccaacaggtctttttcagggacagtttctgtttgtttgcttttttccatagaatgggccataatttcctg------------------tttctatctcttgtgattt---ttgttgaaaactggacattttaatctaataatctggtaagtctaaaagtcagatactc---tctctccagggtt---tgctgttttgtgtttttatttttgttgt----------------aagctatccctgtgctga-ggatcagt-ctgaggtataaaattagg----gtg-ttttcagagcttgcaccttcccctgcacatgtgctgtaactttctaatttatcttg----------------------------------------------------tatatgagg
i ponAbe2.chr12             C 0 C 0
s rheMac3.chr11              79686641 346 - 134985053 tctttgagcatctttaagacag-tgtgttaaagtttttg---------tctgccaacaggtctttttcagggacagtttctgtttgtttgcttttttccatagaatgggccataatttcctgt--------------ttctttctatctcttgtgattt---ttgttgaaaactggacattttaatctaataatctggtaagtctaaaagtcagatactc---tctctccaggctt---tgttgttctgtgtttttatttttgttgt----------------aagctgtccctgtgctga-ggatcagt-ctgaggtataaaattagg----gta-ttttcagagcttgtaccttcccctacacatgcactgtaactttctaatttatcttg----------------------------------------------------tatatgagg
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80785901 346 - 137757926 tctttgagcatctttaagacag-tgtgttaaagtttttg---------tctgccaacaggtctttttcagggacagtttctgtttgtttgcttttttccatagaatgggccataatttcctgt--------------ttctttctatctcttgtgattt---ttgttgaaaactggacattttaatctaataatctggtaagtctaaaagtcagatactc---tctctccaggctt---tgttgttctgtgtttttatttttgttgt----------------aagctgtccctgtgctga-ggatcagt-ctgaggtataaaattagg----gta-ttttcagagcttgtaccttcccctacacatgcactgtaactttctaatttatcttg----------------------------------------------------tatatgagg
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78738748 355 - 132286798 tctTTGAGCATCTTTAAGACAG-TGTGTTAAAGTTTTTGTCTAGTAAATCTGCCAACAGGTCTTTTTCAGGGacagtttctgtttgtttgcttttttccataGAATGGGCCataatttcctgt--------------ttctttctatctcttgtgattt---ttgttgaaaactggacattttaatcTAATAATCTGGTAAGTCTAAAAGTCAGATACTC---TCtctccaggctt---tgttgttctgtgtttttatttttgttgt----------------aagcTGTCCCTGTGCTGA-GGATCAGT-CTGAGGTATAAAATTAGG----GTA-TTTTCAGAGCTTGTACCTTCCCCTACACATGCACTGTAACTTTCTAATTTATCTTG----------------------------------------------------TATATGAGG
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74662556 357 - 128539186 tctttgagcatctttaagacagttatgttaaagtttttgtctagtacatctgccaacaggtctttttcagggacagtttctgtttgtttgcttttttccatagaatgggccataatttcctgt--------------ttctttctatctcttgtgattt---ttgttgaaaactggacattttaatctaataatctggtaagtctaaaagtcagatagtc---tctctccaggctt---tgttgttttgtgtttttatttttgttgt----------------aagctgtccctgtgctga-ggatcagtcctgaggtataaaagtagg----gta-ttttcagagcttgtaccttcccctgcacatgcactgtaactttctaatttctcttg----------------------------------------------------tatatgagg
i chlSab2.chr11             C 0 C 0
s canFam3.chr10              67334729 451 -  69331447 tctttgagcatctttaagacagttgttttaaactctttgtctgctaaatccaccatcaggt-ttttccagggcaagtttctgttagttta-ttttctccttggaatgggccatactttcttgtgtatatcttgtgtatcctttgtatgccttgtgatttggggggttgaaaactagacattcgaatctaataatgtggtaactctggaaatcagattcttctgcttccccagagctagctgttgttttgggttttagtttttggttttgctttcaattggtacaggctgtctctgtgtcaagggatcagc-ctgaggtgtaaactcgggtcttgtatttttctgagcctgtgcctttccccagacatgcctgatgacttcctaactccccctgttttccttttgggcggggtttgtttttgtttttaagattttatttatttatttatttgaga
i canFam3.chr10             I 10204 I 151
e mm10.chr10                126876806 9777 + 130694993 I
e calJac3.chr9               77470337 232 - 124281992 I
e nomLeu3.chr11              54784024 870 + 123690457 I

a score=263493.000000
s hg38.chr12_GL383550v2_alt    137030 132 +    169178 ttacttttgaatgtcatagtcttcagtgtctggctcccaaaggggggaaaagagaaaaatgaagagcacaggaaaa-------------acaaaaaggcaccagccttttaaataaccaggaagtcacttcagccagagggtagg
s panTro4.chr12              31375097 132 + 134246214 ttacttttgaatgtcatagtcttcagtgtctggctcccaaaggggggaaaagagaaaaatgaagggcacaggaaaa-------------acaaaaaggcaccagccttttaaataaccaggaagtcacttcagccagagggtagg
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78577675 132 - 136387465 ttacttttgaatgtcatagtattcagtgtctgcctcccaaagaggggaaaagagaaaaatgaagggcacaggaaaa-------------acaaaaaggcaccagccttttaaataaccaggaagtcacttcagccagagggcagg
i ponAbe2.chr12             C 0 C 0
s rheMac3.chr11              79686987 127 - 134985053 ttacttttgaacgtcatagtcttcagtgtctggctcctaaagtggggaaaagagaaaaatgaagggcacaaaaaaa-------------acaaaaaggcaccagccttttaaataaccgggaagtcacttcagccgggg-----g
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80786247 128 - 137757926 ttacttttgaacgtcatagtcttcagtgtctggctcctaaagtggggaaaagagaaaaatgaagggcacaaaaaaa-------------acaaaaaggcaccagccttttaaataaccgggaagtcacttcagccgggg----ag
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78739103 132 - 132286798 TTACTTTTGAACGTCATAGTCTTCAGTGTCTGGCTCCTaaagtggggaaaagagaaaaatgaagggcacaaaaaaa-------------acaaaaaggcaccaGCCTTTTAAATAACCTGGAAGTCACTTCAGCCgggggatggg
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74662913 130 - 128539186 ttacttttgaacgtcatagtcttcagtgtctggctcccaaagtggggaaaagagaaaaatgaagggcacaaaaaaa-------------acaaaaaggcaccagccttttaaataaccaggaagtcacttcagccgggg--ggag
i chlSab2.chr11             C 0 C 0
s canFam3.chr10              67335331 133 -  69331447 ttgtttttcaatggtctaattttcaatgtctgatacc-----------aaagaggaaaatgaaggac-caaaaaaacaaaaacaaaaacaaaaaaaggcaccagccctttaaagaccctgaaagtcacttcagccggatgcaaag
i canFam3.chr10             I 151 C 0
e mm10.chr10                126876806 9777 + 130694993 I
e calJac3.chr9               77470337 232 - 124281992 I
e nomLeu3.chr11              54784024 870 + 123690457 I

a score=1744268.000000
s hg38.chr12_GL383550v2_alt    137162 675 +    169178  
s panTro4.chr12              31375229 675 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78577807 675 - 136387465  
i ponAbe2.chr12             C 0 C 0
s rheMac3.chr11              79687114 672 - 134985053  
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80786375 672 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78739235 672 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74663043 684 - 128539186  
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77470569 699 - 124281992  
i calJac3.chr9              I 232 C 0
s canFam3.chr10              67335464 624 -  69331447  
i canFam3.chr10             C 0 C 0
e mm10.chr10                126876806 9777 + 130694993 I
e nomLeu3.chr11              54784024 870 + 123690457 I

a score=361576.000000
s hg38.chr12_GL383550v2_alt    137837 113 +    169178 ATGCTTTCTGGATCCAAAATTCAGATATG-GTGCCT-AAAAAAGATTTGAGAATGATTATATGAAAAATATTATAAATATATAAAAATTAAATTGGATTGTATTATGAATTTAAT
s panTro4.chr12              31375904 113 + 134246214 ATGCTTTCTGGATCCAAAATTCAGATATG-GTGCCT-AAAAAAGATTTGAGAATGattatatgaaaaatattataaatatataaaaattaaattGGATTGTATTATGAATTTAAT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78578482 113 - 136387465 ATGCTTTCTGGATCCAAAATTCAGATATG-GTGCCT-AAAAAAGATTTGAGAATGattatatgaaaaatattataaatatataaaaattaaattGGATTGTATTATGAATTTAAT
i ponAbe2.chr12             C 0 C 0
s rheMac3.chr11              79687786 113 - 134985053 ATGCTTTCTGGACCCAAAATTCAAATATG-GTGCCT-AAAAAAAATTTGAGAATGattatatgaaaaatattataaatatataaaaattaaattGGATTGTATTATGAATTTAAT
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80787047 114 - 137757926 ATGCTTTCTGGATCCAAAATTCAAATATG-GTGCCTAAAAAAAAATTTGAGAATGATTATATGAAAAATATTATAAATATATAAAAATTAAATTGGATTGTATTATGAATTTAAT
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78739907 114 - 132286798 ATGCTTTCTGGATCCAAAATTCAAATATG-GTgcctaaaaaaaaatttgagaatgattatatgaaaaatattataaatatataaaaattaaattggattgtattatgaatttaat
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74663727 114 - 128539186 ATGCTTTCTGGATCCAAAATTCAGATATG-GTGCCTAAAAAAATATTTGAGAATGATTATATGAAAAATATTATAAATATATAAAAATTAAATAGGATTGTGTTATGAATTTAAT
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77471268 111 - 124281992 ATGCTTTCTGGATCCAAAATTCAGATATA-GTGCCT---AAAAGATTTGAGAATCATCATATGaaaaatattattaatatacaaaaattaaatttGATTGTATTATGAATTTAAT
i calJac3.chr9              C 0 C 0
s mm10.chr10                126886583 111 + 130694993 ATATTTTCTAAATGTTAAACTCAGGTATATGTGGTG-ACAAAGTATTTTAAA---ATTATGTGAAAAGTCCTATAAACACATAAAAATTAAACTAGATTGCATTATAGATTGAAT
i mm10.chr10                I 9777 C 0
s canFam3.chr10              67336088 114 -  69331447 GTGTTTTCTGAATCTAAAACTCAGACACA-GGGCCTGACAAAAGATTTGAGAATGATTATACGAAAAATCTTATACATACATAAAAATTAACCTCAATTACATTATAAATCTAAT
i canFam3.chr10             C 0 C 0
e nomLeu3.chr11              54784024 870 + 123690457 I

a score=28781.000000
s hg38.chr12_GL383550v2_alt    137950 16 +    169178 GCACTGCCTT---TTTTCT
s panTro4.chr12              31376017 16 + 134246214 GCACTGCCTT---TTTTCT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78578595 16 - 136387465 GCACTGCCTT---TTTTCT
i ponAbe2.chr12             C 0 C 0
s rheMac3.chr11              79687899 19 - 134985053 GCACTGCCTTTACTTTTTT
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80787161 19 - 137757926 GCACTGCCTTTACTTTTTT
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78740021 19 - 132286798 GCACTGCCtttactttttt
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74663841 19 - 128539186 GCACTGCCTTTACTTTTTT
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77471379 15 - 124281992 GCACTGCCT----TTATTT
i calJac3.chr9              C 0 C 0
s mm10.chr10                126886694 16 + 130694993 GTAGTATCTTAGTTTT---
i mm10.chr10                C 0 I 242
e canFam3.chr10              67336202  0 -  69331447 C
e nomLeu3.chr11              54784024 870 + 123690457 I

a score=868462.000000
s hg38.chr12_GL383550v2_alt    137966 383 +    169178 GTTATGGTTTTAGTTTGCTTAAt-------------t----tttttttccataa-ttattggggtacaggtggtatttggttacatgagtaagttctttagtggtgatttgtgagattttggcac-------acccatctcccgaacagtatacactgcaccatatttttagtcttttattcctcggccctcctcctcttcttccccacaagtccccgaagtccattgaattattcttatgcctttgtgtcctcatagcttagctcccacatatcagtgagaacatatgatgtttgggtttccattcctgagttacttcacttag---aataatagtctccagtctcatccaggtcactgcacatgctgataattcattcctttttatggctgag----tagtattccatcatat----------------------
s panTro4.chr12              31376033 384 + 134246214 GCTATGGTTTTAGTTTGCTTAAt-------------t----tttttttccataagttattggggtacaggtggtatttggttacatgagtaagttctttagtggtgatttgtgagattttggtgc-------acccatctcccgaacagtatacactgcaccatatttttagtcttttattcctcggccctcctcctcttcttccccacaagtccccgaagtccactgaattattcttatgcctttgtgtcctcatagcttagctcccacatatcagtgagaacatatgatgtttgggtttccattcctgagttacttcacttag---aataatagtctccagtctcatccaggtcactgcacatgctgttaattcattcctttttatggctgag----tagtattccatcatat----------------------
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78578611 384 - 136387465 GTTATGGTTTTAGTTTGCTTAAt-------------t----tttttttccataagttattggggtacaggtggtatttggttacatgagtaagttctttagtggtgatttgtgagattttggtgc-------acccatctcccgagcagtatacactgcaccatatttttagtcttttattcctcggctctcctccacttcttccccccaagtccccaaagtccattgaattattcttatgcctttgtgtcctcatagcttagctcccacatatcagtgacaacatacaatgtttgggtttccattcctgagttacttcacttag---aataatagtctccagtctcatccaggtcactgcacatgctgttaattcattcctttttatggctcag----tagtattccatcatat----------------------
i ponAbe2.chr12             C 0 C 0
s rheMac3.chr11              79687918 398 - 134985053 GTTATGGTTTCAGTTTGCTTAATTTTA---------t----tttttttccataagttcttggggtacaggtggtatctggttacataagtgagttttttagtggtgatttgtgagattttggtgctttttgcacccatcacctgagcagtatacactgcaccatatttttagtcttttattcctcagccccactcctcttcttccccctaagtccccaaaatcaactgaatcattcttatgcctttgtgtcctcatagcttagctcccacatatcagtgagaacatatgatgtttggttttccattcccgagttactttgcttagaataataatagtctccagtctcatccaggtcactgcaaatgctgttaattcattcctttttatggctgag----aagtattccatcatat----------------------
i rheMac3.chr11             C 0 I 3498
s macFas5.chr11              80787180 390 - 137757926 GTTATGGTTTCAGTTTGCTTAATTTTA---------t----tttttttccataagttcttggggtacaggtggtatctggttacataagtgagttttttagtggtgatttgtgagattttggtgc--------accatcacctaagcagtatacactgcaccatatttttagtcttttattcctcagccccactcctcttcttccccctaagtccccaaaatcaactgaatcattcttatgcctttgtgtcctcatagcttagctcccacatatcagtgagaacatatgatgtttggttttccattcccgagttactttgcttagaataataatagtctccagtctcatccaggtcactgcaaatgctgttaattcattcctttttatggctgag----aagtattccatcatat----------------------
i macFas5.chr11             C 0 I 30
s papAnu2.chr11              78740040 389 - 132286798 gttatggtttcagtttgcttaattttat--------t----tttttttccataagttattggggtacaggtggtatctGGTTACATAAGTgagttttttagtggtgatttgtgagattttggtgc-------acccatcacctgagcagtatacactgcaccatatttttagtcttttattcctcagcCCCACTCCTCTTCTTCCCCCTAAGTCCCCAAAATCCACTgaatcattcttatgcctttgtgtcctcatagcttagctcccacatatcagtgagaacatatgatgtttggttttccattcccgagttactttgcttag---aataatagtctccagtctcatccaggtcactgcaaatgctgttaattcattcctttttatggctgag----aagtattccatcatat----------------------
i papAnu2.chr11             C 0 I 6
s chlSab2.chr11              74663860 395 - 128539186 GTTATGGTTTCAGTTTGCTTAATTTTA---------Ttttatttttttccataagttactggggtacaggtggtatctggttacataagtgagttttttagtggtgatttgtgagattttggtgc-------acccatcacctgagcagtatacactgcaccatatttttagtcttttattcctcagccccactcctcttcttcctcctaagtccccaaaatccactgaatcattcttatgcctttgtgtcctcatagcttagctcccacatatcagtgagaacatatgatgtttggttttccattcccgagttactttgcttagaataataatagtctccagtctcatccaggtcactgcaaatgctgttaattcattcctttttatggctgag----aagtattccatcatat----------------------
i chlSab2.chr11             C 0 I 36
s calJac3.chr9               77471394 422 - 124281992 GTTATGGTTTTAGTTTGCTTAAttttattttatttat----tttttttccataaattattggggtacaggtggtatttggttacatgtgtgagttctttagtggtgatttgtgagattttgatgc-------atccatcacccaagcagtatacattgtaccatatttgcagtcttttattcctcggcccccctccctctctttccccaaagtcaccaaattccactgaatcattcttatgcctttgtttcctcatagcttagcacccacctatcagtgagaacatatgatgcttggttttccattcctgagttacttcacataa---agtaataatatccagcctcatcca-gtcactgcaaatgctgttaattcattcctttttatggctgagccatcagtattccaccacagatacagatatcgataaagatat
i calJac3.chr9              C 0 C 0
e mm10.chr10                126886710 242 + 130694993 I
e canFam3.chr10              67336202   0 -  69331447 C
e nomLeu3.chr11              54784024 870 + 123690457 I

a score=3089358.000000
s hg38.chr12_GL383550v2_alt    138349 1788 +    169178  
s panTro4.chr12              31376417 1791 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78578995 1787 - 136387465  
i ponAbe2.chr12             C 0 I 9
s macFas5.chr11              80787600 1775 - 137757926  
i macFas5.chr11             I 30 C 0
s papAnu2.chr11              78740435 1769 - 132286798  
i papAnu2.chr11             I 6 C 0
s chlSab2.chr11              74664291 1779 - 128539186  
i chlSab2.chr11             I 36 C 0
s calJac3.chr9               77471816 1797 - 124281992  
i calJac3.chr9              C 0 C 0
e mm10.chr10                126886710  242 + 130694993 I
e canFam3.chr10              67336202    0 -  69331447 C
e rheMac3.chr11              79688316 3498 - 134985053 I
e nomLeu3.chr11              54784024  870 + 123690457 I

a score=1978.000000
s hg38.chr12_GL383550v2_alt    140137 12 +    169178 aagggacatacc
s panTro4.chr12              31378208 12 + 134246214 aagggacatacc
i panTro4.chr12             C 0 C 0
s macFas5.chr11              80789375  9 - 137757926 -attgaagta--
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78742204  9 - 132286798 -attgaagtA--
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74666070  9 - 128539186 -attgaagta--
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77473613  9 - 124281992 -attgaggca--
i calJac3.chr9              C 0 C 0
e mm10.chr10                126886710 242 + 130694993 I
e canFam3.chr10              67336202  0 -  69331447 C
e rheMac3.chr11              79688316 3498 - 134985053 I
e nomLeu3.chr11              54784024 870 + 123690457 I
e ponAbe2.chr12              78580782  9 - 136387465 I

a score=2798182.000000
s hg38.chr12_GL383550v2_alt    140149 1612 +    169178  
s panTro4.chr12              31378220 1612 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78580791 1618 - 136387465  
i ponAbe2.chr12             I 9 C 0
s macFas5.chr11              80789384 1601 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78742213 1596 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74666079 1601 - 128539186  
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77473622 1600 - 124281992  
i calJac3.chr9              C 0 I 327
e mm10.chr10                126886710  242 + 130694993 I
e canFam3.chr10              67336202    0 -  69331447 C
e rheMac3.chr11              79688316 3498 - 134985053 I
e nomLeu3.chr11              54784024  870 + 123690457 I

a score=1198469.000000
s hg38.chr12_GL383550v2_alt    141761 717 +    169178  
s panTro4.chr12              31379832 716 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78582409 702 - 136387465  
i ponAbe2.chr12             C 0 C 0
s macFas5.chr11              80790985 711 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78743809 717 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74667680 717 - 128539186  
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77475549 716 - 124281992  
i calJac3.chr9              I 327 C 0
e mm10.chr10                126886710 242 + 130694993 I
e canFam3.chr10              67336202   0 -  69331447 C
e rheMac3.chr11              79688316 3498 - 134985053 I
e nomLeu3.chr11              54784024 870 + 123690457 I

a score=2486880.000000
s hg38.chr12_GL383550v2_alt    142478 1084 +    169178  
s panTro4.chr12              31380548 1084 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78583111 1083 - 136387465  
i ponAbe2.chr12             C 0 C 0
s rheMac3.chr11              79691814 1084 - 134985053  
i rheMac3.chr11             I 3498 C 0
s macFas5.chr11              80791696 1074 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78744526 1080 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74668397 1081 - 128539186  
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77476265 1084 - 124281992  
i calJac3.chr9              C 0 C 0
e mm10.chr10                126886710  242 + 130694993 I
e canFam3.chr10              67336202    0 -  69331447 C
e nomLeu3.chr11              54784024  870 + 123690457 I

a score=1352593.000000
s hg38.chr12_GL383550v2_alt    143562 445 +    169178 agt-ggggccctagaactcccaagattgtatgccctttttgttcagataccagggtgggtagggaaggaacatcaggtcggggcagggatagacatgtctgagctcagactctccttgggcaggtcttgctgtgactgttgtgggagatgagggtgagattcccaggtcactggagttgtgtccctaggaggattatgactgcctctggggagtcatgcaggttgtcagggaagtaggggaaagccggcagtcacaggcctcacccagctcccacacaagccgaagggccagtctcactcccaccatg----ccccccaccacag-ccccaagtctgcttccaggtggtgggtgagacaggcttgaaaacttgccccaggctacccacctcccagctgtgaaagaaaagagcttggttcttcccc-tctgtggattctgcacatgggatttg
s panTro4.chr12              31381632 446 + 134246214 agtgggggccctagaactcccaagattgtatgccctttttgttcagataccagggtgggtagggaaggaacatcaggtcggggcagggataggcatgtctgagctcagactctccttgggcaggtcttgctgtgactgttgtgggagatgagggtgagattcccaggtcactggagttgtgtccctaggaagattatggctgcctctggggagtcatgcaggttgtcagggaagtgggggaaagccagcagtcacaggcctcacccagctcccacacaaaccgaagggccagtctcactcccaccatg----ccccccaccacag-ccccaagtctgcttccaggtggtgggtgagacaggcttgaaaacttgccccaggctacccacctcccagctgtgaaagaaaagagcttggttcttcccc-tctgtggattctgcacatgggatttg
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78584194 445 - 136387465 agc-ggggccctagaactcccaagattgtatgccctttttgttcagatactagggtgggtagggaaggaacatcaggtcggggcagggataggcatgtctgagctcagactttccttgggcaggtcttgctatgactgttgtgggagatgagggtgagatttccaggtcactggagttgtgtccctaggaggattatggctgcctctggcgaatcatgcaggttgtcagggaagtgggggaaagccggcagtcacaggcctcacccagctcccacacaaaccgaagggccagtctcactcccaccatg----ccccccaccacag-ccccaagtctgtttccaggtggtgggtgagacaggcttgaaaacttgccccaggctacccacctcccagctgtgaaagaaaagagcttggttcttcccc-tctgtggattctgcacatgggatttg
i ponAbe2.chr12             C 0 I 496
s nomLeu3.chr11              54784894 444 + 123690457 Agc-agggccctagaactcccaagattgtatgccctttttgttcagataccagggtgggtagggaaggaacatcaggtcggggcagggataggcatgtctgagctcagactctccttaggcaggtcttgctgtgactgttgtgggagatgagggtgagattcccaggtcactggagttgtgtacctaggaggattatggctgcctctggggagtcatgcaggttgtcagggaagtgggggaaagccagcagtcacaggcctcacccagctcccatacaaaccgaagggccagtctcactcccaccatg----ccccccaccacag-ccacaagtctgtttccaggtggtgggtgagacaggcttgaaaacttg-cccaggctacccgcctcccagctgtgaaagaaaagagcttgtttcttcccc-tctgtggattctgcacacaggatttg
i nomLeu3.chr11             I 870 C 0
s rheMac3.chr11              79692898 445 - 134985053 agc-ggggccctagaactcccaagattatatcccctttttgttcagataccagggtgggtagggaaggaacatcaggtcggggcagggacagatatgtctgagctcagactcttcttgggcaggtcttgctgtgactgtcgtgggggatgagagtgagattcccaggtcactggagttatgtacctaggaggattatggctgcctctgctgagtcatgcaggttgtcagggaagtgagggaaagctggcagtcacaagtatcacccagctcccacacaaaccgaagggccagtctcactcccaccatg----ccccccaccacag-ccccaagtctctttccaggtggtgggtgagacaggcttgaaaacttgccccaggctacctgcttcccagctgtgaaagaaacgagcttggttcttaccc-tctgtggattctgcacacgggatttg
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80792770 445 - 137757926 agc-ggggccctagaactcccaagattatatcccctttttgttcagataccagggtgggtagggaaggaacatcaggtcggggcagggacagatatgtctgagctcagactcttcttgggcaggtcttgctgtgactgtcgtgggggatgagagtgagattcccaggtcactggagttatgtacctaggaggattatggctgcctctgctgagtcatgcaggttgtcagggaagtgagggaaagctggcagtcacaagtatcacccagctcccacacaaaccgaagggccagtctcactcccaccatg----ccccccaccacag-ccccaagtctgtttccaggtggtgggtgagacaggcttgaaaacttgccccaggctacctgcttcccagctgtgaaagaaacgagcttggttcttaccc-tctgtggattctgcacacgggatttg
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78745606 446 - 132286798 Agc-ggggccctagaactcccaagattatatccCCTTTTTGTTCAgataccagggtgggtagggaaggaacATCAGGTCGGGGCAGGGACAgatgtgtctgagctcagactcttcttgggcaggtcttgctgtgACTGTCATGGGGGATGagggtgagattcccaggtcactggagttatgtacctaggaggattatggctgcctctgctgagtcatgcaggttgtcagggaagtgagggaaagctggcagtcacaagtatcacccagctcccacacaaactgaagggccagtctcactcccaccatg----ccccccaccacagcccccaagtctgtttccaggtggTGGGTGAGACAggcttgaaaacttgccccaggctacctgcTTCCCAGCTGTGAAAGAAACGAGCTTGGTTCTTACCC-TCTGTGGATTCTGCACACGGGATTTG
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74669478 445 - 128539186 agg-ggggccctagaactcccaagattatatcccgtttttgttcagataccagggtgggtagggaaggaacatcaggtcggggcagggacagatatgtctgagctcagactcttcttgggcaggtcttgctgtgactgtcgtgggggatgggagtgagattcccaggtcactggagttgtgtacctaggaggattatggctgcctctgctgagtcatgcaggttgtcagggaagtgagggaaagctggcagtcacaagtatcacccagctcccacacaaaccgaagggccagtctcactcccaccatg----ccccccaccacag-ccccaagtctatttccaggtggtgggtgagacaggcttgaaaacttgtcccaagctacctgcttcccagctgtgaaagaaacgagcttggttcttaccc-tctgtggattctgcacacgggatgtg
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77477349 450 - 124281992 ggc-agggctctagaactcccaagattacatgtcctttgtgttcagataccagggtgggtaaggaagaaacatcaggttggggcagggctaggtgtgtctcagctcagactctccttgggcgggtcctgctgtgactgctgtgggggctgggggtaagatgcccaagtcactagagttgtgtatctaggaggattatggccgtctctgctgagtcatgcaggttgtcagggaaatggggcaaagctggcagtcacaggtctcactaagttcccatgcaaaccgaagggccagtctcactcccgccatgccacccacccaccccag-ccccaagtcagtttgcagggggtgggcgaatcaggcttgaaaatttgccccaggctacctgccacccaattgtgaaagaaaagggtttggttcttccccacctgtggattctgcacaccgaatttg
i calJac3.chr9              C 0 C 0
e mm10.chr10                126886710 242 + 130694993 I
e canFam3.chr10              67336202   0 -  69331447 C

a score=1883.000000
s hg38.chr12_GL383550v2_alt    144007 1 +    169178 t
s panTro4.chr12              31382078 1 + 134246214 c
i panTro4.chr12             C 0 C 0
s nomLeu3.chr11              54785338 1 + 123690457 c
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79693343 1 - 134985053 c
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80793215 1 - 137757926 c
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78746052 1 - 132286798 C
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74669923 1 - 128539186 c
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77477799 1 - 124281992 c
i calJac3.chr9              C 0 C 0
e mm10.chr10                126886710 242 + 130694993 I
e canFam3.chr10              67336202 0 -  69331447 C
e ponAbe2.chr12              78584639 496 - 136387465 I

a score=1352215.000000
s hg38.chr12_GL383550v2_alt    144008 462 +    169178 gccctctcccaagttctggccgggaggcttcttgccccattgaaatagttacaaagttcagctagagatgtccttctccctgtggagttttacccgctgctcttctggctgcccttgcaatggatctctgtggtgacaggcaggaatgggctgcttggggacccagcgagctccctgggccttcctgctgcttgctcta-cccctgtatttcgctcggctctctaaattaactcagctccaggtaaggtcggaaacttctcccacaaacagaccttcagtttctccagtggggg----ggtgtgtgt-gggagaggagggtc--tccctttcccac-ttctgcagtt-gggcactcacagtatttggggtgtctcctgggcactgtaggagcagtcgcttccttcagagggtctgtgggtcctctcagtattgctggtttgttcttgcagtcgatctggagctaaaattcGA
s panTro4.chr12              31382079 462 + 134246214 gccctctcccaagttctggctgggaggcttcttgccccattgaaatagttacaaagttcagctagagatgtccttctccctgtggagttttacccgctgctcctctggctgcccttgcaatggatccccgtggtgacaggcaggaatgggctgcttggggacccagcgagctccctgggccttcctgctgcttgctcta-cccctgtatttcgctcggctctctaaattaactcagctccaggtaaggttggaaacttctcccacaaacagaccttcagtttctccagtggggg----ggtgtgtgt-gggagaggagggtc--tccctttcccac-ttctgcagtt-gggcactcacagtatttggggtgtctcctgggcactgtaggagccgtcgcttccttcagagggtctgtgggtcctctcagtattgctggtttgttcttgcagtcaatctggagctaaaattcGA
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78585135 462 - 136387465 gccctctcccaagttctggccggtaggcttcctgccccattgaaatagttacaaagttcagctagagatgtccttctccctgtggagttttacccgctgctcctctggctgcccttgcaatggatccctgtggtgacaggcaggaatgggctgcttggggacccagcgagctccctgggccttcctgctgcttgctcta-cccttgtatttcactcggctctctaaattaactcagctccaggtaaggtcggaaacttctcccacaaacagaccttcagtttctccagtggggg----tgtgtgtgt-gggagaggagggtc--tccctttcccac-ttctgcagtt-gggcactcacagtatttggggtgtctcctgggtactgcaggagcagtcgcttccttcagagggtctgtgggtcctctcggtattgctggtttgttcttacagtcgatctggagctaaaattcGA
i ponAbe2.chr12             I 496 C 0
s nomLeu3.chr11              54785339 455 + 123690457 accctctcccaagttctggccaggaggcttcatgccccattgaaattgttacaaagttcagctagagatgtccttctccctgtggagttttacccgctgctcctctggctgccctcgcaatggatccctgtggtga----caggaatgggctgcttggggacccagcgagctccctgggcctttctgctgcttcctcta-cccctgtatttcgctcggctctctaaattaactcagctccaggtaagattggaaactt---ccacaaacagaccttcagtttctccagtggggg----ggtgagttt-gggagaggagggtc--tccctttcccac-ttctgcagtt-gggcactcacagtatttggggtgtctcctgggtactgtaggagtagtcacttccttcagagggtctgtgggtcctctcggtattgctggtttgtccctgcagtccatctggagctaaaattcGA
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79693344 465 - 134985053 gccctctcccaagttctggccaggaggcttctcgccccattgaaattgttacaaagtccagctagagatttccttctgtgtgtggagttttaccctctgcttctctggctgcccccacaatggattcctgtggtgacaggcaggaatgggctgcttggggacccagcgagctccctgggcctttctgctgcttactctaccccctgtatttcgctcggctctctaaattaactcagctccaggtaaggttggaaacttctcccacaaacagaccttcagtttctccactgggggg---ggtgtgctt-gggagaggagggtc--tccctttcccac-ttctgcaattggggcattcacagtattttaggtgtctcctgggtactgcaggagctgttgcttccttcagagggtctgtgggtcctcttggtattgctggtttgttcttgcagtcgatctggagctaaaattTGA
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80793216 465 - 137757926 gccctctcccaagttctggccaggaggcttctcgccccattgaaattgttacaaagtccagctagagatttccttctgtgtgtggagttttaccctctgcttctctggctgcccccacaatggattcctgtggtgacaggcaggaatgggctgcttggggacccagcgagctccctgggcctttctgctgcttcctctaccccctgtatttcgctcggctctctaaattaactcagctccaggtaaggttggaaacttctcccacaaacagaccttcagtttctccactgggggg---ggtgtgctt-gggagaggagggtc--tccctttcccac-ttctgcaattggggcattcacagtatttgaggtgtctcctgggtactgcaggagccgttacttccttcagagggtctgtgggtcctcttggtattgctggtttgttcttgcagtcgatctggagctaaaattTGA
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78746053 471 - 132286798 GCCCTCtcccaagttctggccaggaggcttctcgcCCCATTGAAATTGTTACAAAGTCCAGCTAGAGATTTCCTTCTCTGTGTGGAGTTTTACCCTCTGCTTCTCTGGCTGCCCCCACAATGGATTCCTGTGGTGacaggcaggaatgggctgcttggggacccagcgAGCTCCCTGGGCCTTTCTGCTACTTCCTCTACCCCCTGTATTTTGCTCGGCTCTCTAAATtaactcagctccaggtaaggttggaaacttctcccacaaacagaccttcagttTCTCCACTggggggggCGGTGTGCTTGGGGAGAGGAGGGTCCTCCCCTTTCCCACTTTCTGCAATTGGGGCATTCACAGTA-TTGAGGTGTCTCCTGGGTACTGCAGGAGCCgttgcttccttcagagggtctgtgggtcctcttggtattgctggtttgttcttacagtcgatctggagctaaaatttgA
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74669924 465 - 128539186 gccctctcccaagttctggccaggaggcttctcgccccattgaaattgttacaaagtccagctagagatttccttctctgtgtggagttttaccctctgctcctctggctgcccccacaatggattcctgtggtgacaggcaggaatgggctgcttggggaaccagcgagctccctgggcccttctgctgcttcctctaccccctgtatttcactcggctctctaaattaactcagctccaggtaaggttggaaacttctcccacaaacagaccttcagtttctccactgggggg---ggtgtgctt-gggagaggagggtc--tccctttcccac-ttctgcagttggggcactcacagtatttgaggtgtctcctgggtactgcaggagctgttgcttccttcagagggtctgtgggtcctcttggtattgctggtttgttcttgcagtcgatctggagctaaaattTGA
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77477800 458 - 124281992 -acctcccctgagttctggccaggaggcttctcattccattcaaattgttaaaaagttcagctagagatttcctcctccctgtggagttttaccc-ctgctcctctggctgccctcacaatggatctctgtggtgccaagcagaaat-ggctgcttggggacccagcaagcgcccagggcctttctgctgcttcctcta-cccctgtatttcactcagctctctaaagtgactcagctccagataaggtcagaaatttatctcacaaacaaaacttcagtttttccagtggggg----tgtgtattc-aggaaaggagggtc--tccctctcccac-ttctgcagtg-gggcactcacagtattcggggtg-ctcctgggtaccgcaggagcagtctactccttcagagggtctgtgagttgtctcagtattgctggtttgttcttgcagtcaatctggagctaaaattcGA
i calJac3.chr9              C 0 C 0
e mm10.chr10                126886710 242 + 130694993 I
e canFam3.chr10              67336202   0 -  69331447 C

a score=44271.000000
s hg38.chr12_GL383550v2_alt    144470 14 +    169178 GCACTGCCTTTATT
s panTro4.chr12              31382541 14 + 134246214 GCACTGCCTTTATT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78585597 14 - 136387465 GCACTGCGTTTATT
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54785794 14 + 123690457 GCACTGCCTTTATT
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79693809 14 - 134985053 CCACTGCCTTTATT
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80793681 14 - 137757926 CCACTGCCTTTATT
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78746524 14 - 132286798 CCACTgcctttatt
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74670389 14 - 128539186 CCACTGCCTTTATT
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77478258 14 - 124281992 GCACCACCTTTATT
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67336202 13 -  69331447 GCACTGCCTTTAC-
i canFam3.chr10             C 0 C 0
e mm10.chr10                126886710 242 + 130694993 I

a score=3166165.000000
s hg38.chr12_GL383550v2_alt    144484 831 +    169178  
s panTro4.chr12              31382555 830 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78585611 831 - 136387465  
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54785808 826 + 123690457  
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79693823 827 - 134985053  
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80793695 830 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78746538 823 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74670403 827 - 128539186  
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77478272 816 - 124281992  
i calJac3.chr9              C 0 C 0
s mm10.chr10                126886952 995 + 130694993  
i mm10.chr10                I 242 C 0
s canFam3.chr10              67336215 897 -  69331447  
i canFam3.chr10             C 0 I 918

a score=850550.000000
s hg38.chr12_GL383550v2_alt    145315 281 +    169178 AAAATTAA----------------TTTC--CT--CATATTA--TTTTACTAATTTCTGTCATTCCAAAGAAGAAAACAAAATGAACAAAGATC----CATAACACTTAA-----GGAGTATTTTTAGCTCAACCTAAAATTATTTAGGCATAAGTAAGACCTTCTCCATTTTCTCATCTTTCCCACTGATATAAGCAGATGTCATTCTCAGAAATTCTTGGCAGTGTCTGCCAAACAATATCTCCCAATTTGCAAACTCGCCAAAAAAAAAAAAAAAG-------------------------------------------------------------------TCT----ATAAAGTCCTGATTGACTTT--TTGATAAAATT
s panTro4.chr12              31383385 279 + 134246214 aaaattaa----------------tttC--CT--CATATTA--TTTTACTAATTTCTGTCATTCCAAAGAAGAAAACAAAATGAACAAAGATC----CATAACACTTAA-----GGAGTATTTTTAGCTCAACCTAAAATTATTTAGGCATAAGTAAGACCTTCTCCATTTTCTCATCTTTCCCACTGATATAAGCAGATGTCATTCTCAGAAATTCTTGGCAGTGTCTGCCAAACAATATCTCCCAATTTGCAAACTCGCC--AAAGAAAAAAAAAG-------------------------------------------------------------------TCT----ATAAAGTCCTGATTGACTTT--TTGataaaatt
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78586442 281 - 136387465 AAAATTAA----------------TTTC--CT--CATATTA--TTTTACTAATTTCTGTCATTCCAAAGAAGAAAACAAAATGAACAAAGATC----CATAACACTTAA-----GGAGTATTTTTAGCTCAACCTAAAATTATTTAGGCATAAGTAAGACCTTCTCTATTTTCTCATCTTTCCCACTGATATAAGCAGATGTCATCCTCAGAAATTCTTGGCAGTGTCTGCCAAACAATATCTCCCAATTTGCAAAATTGCCAAAAAAAAAAAAAAAG-------------------------------------------------------------------TCT----ATAAGGTCCTGATTGACTTT--TTGataaaatt
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54786634 279 + 123690457 AAAATTAA----------------TTTC--CT--TATATTA--TTTTACTAATTTCTGTCATTCCAAAGAAGAAAACAAAATGAACAAAGATC----CATAACACTTAA-----GGAGTATTTTTAGCTCAACCTAAAATTATTTAGGCATAAGTAAGACCTTCTCTGTTTTCTCATCTTTCCCACTGATATAAGCAGATGTCATTCTCAGAAATTCTTGGCAGTGTCTGCCAAACAATATCTCCCAATTTGCAAAATCGCC--AAAAAAAAAAAAAG-------------------------------------------------------------------TCT----ATAAGGTCCTGATTGACTTT--TTGGTAAAATT
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79694650 274 - 134985053 AAAATTAA----------------TTTC--CT--CATATTA--TTTTACTAATTTCTATCATTCCAAAGAAGAAAACAAAATGAACAAAGATA----CCTAACACTTAA-----GGAGTATTTTTAGCTCAACCTAAAATTATTTAGGCTTAAGTAAGAC---CTCTATTTTCTCATCTTTCCCACTAATATAAGCAGATGTCATTCTCAGAAATTCTATGCAGTGTCTACCACACAGTATCTGCCAA-------------------------------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----------------------------------------
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80794525 284 - 137757926 AAAATTAA----------------TTTC--CT--CATATTA--TTTTACTAATTTCTATCATTCCAAAGAAGAAAACAAAATGAACAAAGATA----CCTAACACTTAA-----GGAGTATTTTTAGCTCAACCTAAAATTATTTAGGCATAAGTAAGAC---CTCTATTTTCTCATCTTTCCCACTAATATAAGCAGATGTCATTCTCAGAAATTCTATGCAGTGTCTACCAAACAGTATCTCCCAATTTGCAAAATCGCC-aaaaaaaaaaaaaaaaaaaaaG------------------------------------------------------------TCT----ATAAGGTCCTGAGTGACTTT--TTTATAAAATT
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78747361 275 - 132286798 aaaattaa----------------tttc--ct--catatta--ttttactaatttctatcattccaaagaagaaaacaaaatgaacaaagata----CATAACACTTAA-----GGAGTATTTTTAGCTCAACCTAAAATTATTTAGGCATAAGTAAGac---ctctattttctcatctttcccACTAATATAAGCAGATGTCATTCTCAGAAATTCTACGCAGTGTCTACCAAACAGTATCTCCCAATTTGCAAaatcgcc-aaaaaaaaaaaag---------------------------------------------------------------------tct----ataaggTCCTGATTgacttt--tttataaaatt
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74671230 277 - 128539186 AAAATTAA----------------TTTC--CT--CATATTA--TTTTACTAATTTCTATCATTCCAAAGAAGAAAATGAAATGAACAAATATA----CATAACACTTAA-----GGAGTATTTTTAGCTCAACCTAAAATTATTTAGGCATAAGTAAGAC---CTCTATTTCCTCATCTTTCCCACTAATATAAGCAGATGTCATTCTCAGAAATTCTACGCGGTGTCTACCAAACAGTATCTACCAATTTGCAAAATCGCC-AAAAAAAAAAAAAAG-------------------------------------------------------------------TCT----ATAAGGTCTTGATTGACTTT--TTTATAAAATT
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77479088 261 - 124281992 AAAATTAA----------------TTTCCTCT--CATACTA--TTTTACTGATTTCTGTCATTCCAAAGAAGAAAAC----------AAGATA----CATAACTCTTAA-----GGAGAATTTTTAGCTCAATCTAAAATTATTTAGGCATAAGTAAGACCCTCTCTATTTTCTCATCTTTCCCACTAATATAAGCAGATGTCATTCTCAGAAATTTGAGGTAGTGTCTGCCTAACAGTATCTCCCAG-TTGCAAAATCGCC-----AAAAGTAAAGG-------------------------------------------------------------------TCT----ATAAGGTTCTGACG---TTT--TTCATAAA---
i calJac3.chr9              C 0 C 0
s mm10.chr10                126887947 287 + 130694993 AAAAATAAGTCATAGAGATTCACTTTTC--CT--CCTGTTCTTTTTTATTACTTTCTGCCATTCtaaaaattaaaataaaattaacaaatataattCTCTAAC---CAT-----GGAACA-TGTCAGTTTGCTCTAAAACTATTTGGGCATAAATAAGAC-----CCCACTTCTTAT-TTTCTCAGGAATAT-AGCCAATGTCATCCTTTGATGCACCAGGCAGTGTCTGCCAAATATGAATTCCCACTTTGCAAAATCACA-----------AAAAG-------------------------------------------------------------------TCCGTAGACAAGGTCCTGAATGATCTTGGTTAATTAAATT
i mm10.chr10                C 0 I 207
s canFam3.chr10              67338030 261 -  69331447 AGAATTAA----------------TTCC--CTTCCATATTA--TTTTATTAATTTCTGTCATTCTAAGTAGAAGTAGAAA-----------------CATAACTCTTAAATTATAGAATATTTTTAGCTCAATCTAAAATTATTTAGGTATAAGTAAGAC---CTCCATTTTTTCATCTTCTCCA------------GATGTCATTCTCTGAAGTTGTAGGCA--GTCCAACAAACAGTAACTCCCAATTTGCAAAAATCAA-ACAAACACACAAAAC-------------------------------------------------------------------TCTACAAATAAGGTTCTGGTTGGattt--ttaataaaatt
i canFam3.chr10             I 918 C 0

a score=26720.000000
s hg38.chr12_GL383550v2_alt    145596 12 +    169178 TAATTAAATT----------------------TA
s panTro4.chr12              31383664 12 + 134246214 taattaaatt----------------------ta
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78586723 12 - 136387465 taattaaatt----------------------ta
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54786913 12 + 123690457 TAATTAAATT----------------------TA
i nomLeu3.chr11             C 0 C 0
s macFas5.chr11              80794809 12 - 137757926 TAATTAACTT----------------------TA
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78747636 12 - 132286798 taattaaatt----------------------ta
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74671507 12 - 128539186 TAATTAAATT----------------------TA
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77479349  8 - 124281992 ----TAAATT----------------------TA
i calJac3.chr9              C 0 C 0
s mm10.chr10                126888441 34 + 130694993 TAACCAAAATAAAACCTATCtttttaaaaaaata
i mm10.chr10                I 207 C 0
s canFam3.chr10              67338291 12 -  69331447 taaatagatt----------------------ta
i canFam3.chr10             C 0 I 207
e rheMac3.chr11              79694924  0 - 134985053 C

a score=649146.000000
s hg38.chr12_GL383550v2_alt    145608 204 +    169178 AAATA---------------------------------------------------TACTTCACTTCTGTACCTCTCTTT-------C-----TTTTCAGTTGACCAATGCTAGA-TAACTTTTCCTTTGAGAAGGGTAAGTCCTCTCTGGAGGCAACAGGAAACCATACACATATCCACCCGAACTTGGAATGTACCTTAATTTTTTAGGGGGTGTGGAAATTAAACAAC-TTTTTTTTCCTGATTGTTCTTTACACAGATATTAAAG
s panTro4.chr12              31383676 200 + 134246214 aaata---------------------------------------------------taCTTCACTTCTGTACCTCTCTTT-------C-----TTTTCAGTTGACCAATGCTAGA-TAACTTTTCCTTTGAGAAGGGTAAGTCCTCTCTGGAGGCAACAGGAAACCATACACATATCCACCCGAACTTGGAAAGTACCTTAATTTTTTAGGGGGGGTGGAAATT----AAC-TTTTTTTTCCTGATTGTTCTTTACACAGATATTAAAG
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78586735 204 - 136387465 aaata---------------------------------------------------taCTTCACTTCTGTACCTCTCTTT-------C-----TTTTCAGTTGACCAATGCTAGA-TAACTTTTCCTTTGAGAAGGGTAAGTCCTCTCTGGAGGCAACAGGAAACCATACACATATCCACCCAAACTTGGAAAGTACCTTAATTTTTTAGGGGGGGTGGAAATTAAACAAC-TTTTTTTTCCTGATTGTTCTTTACACAGATATTAAAG
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54786925 203 + 123690457 AAATA---------------------------------------------------TACTTCACTTCTGTACCTCTCTTT-------C-----TTTTCAGTTGACCAATGCTGGA-TAACTTTTCCTTTGAGAAGGGTAAGTCCTCTCTGGAGGCAACAGGAAACCATACACATATCCACCCAAACTTGGAAAGTACCTTAATTTTTTAGGGGG-GTGGAAATTAAATAAC-TTTTTTTTCCTGATTGTTCTTTATACAGATATTAAAG
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79694924 219 - 134985053 -----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------------------------------------------AGATGACCAATGCTACA-TAACTTTTCCTTTGAGAAGGGTAAGTCCTCTCTGGAGGCAACAGAAAACCATACACATATCCACCCAAACTTGGAAAGTACCGTAATTTTTTAAGGGGGGTGGAAATTAAACAAC--TTTTTTTCCTGATTGTTCTTTACACAGATATTAAAC
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80794821 203 - 137757926 AAATA---------------------------------------------------CACTTCACTTCTGTACCTCTCTTT-------C-----TTTTCAGTTGACCAATGCTACA-TAACTTTTCCTTTGAGAAGGGTAAGTCCTCTCTGGAGGCAACAGAAAACCATACACATATCCACCCAAACTTGGAAAGTACCTTAATTTTTTAAGGGGGGTGGAAATTAAACAAC--TTTTTTTCCTGATTGTTCTTTACACAGATATTAAAC
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78747648 203 - 132286798 aaata---------------------------------------------------cacttcACTTCTGtacctctcttt-------c-----ttttcagttGACCAATGCTACA-TAACTTTTCCTTTGAGAAGGGTAAGTCCTCTCTGGAGGCAACAGAAAACCATACACATATCCACCCAAACTTGGAAAGTACCTTAATTTTTTAAGGGgggtggaaattaaacaac--tttttttccTGATTGTTCTTTACACAGATATTAAAG
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74671519 203 - 128539186 AAATA---------------------------------------------------CACTTTACTTCTGTACCTCTCTTT-------C-----TTTTCAGTTGACCAATGCTAGA-TAACTTTTCCTTTGAGAAGGGTAAGTCCTCCCTGGAGGCAACAGAAAACCATACACATATCCACCCAAACTTGGACAGTACCTTAATTTTTTAAGGGGGGTGGAAATTAAACAAC--TTTTTTTCCTGATTGTTCTTTACACAGCTATTAAAG
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77479357 199 - 124281992 AAATA---------------------------------------------------TACTTCACTTCTGTACC-CTCTTT-------C-----TTTTCAGTTGACCAATGCTAGA-TAACTTTTCCTTTGAGAAGGGC-AGTCTTCTCTAGAGGCAACAGGAAACCATACACATATCCAACCAAACCTGGAAAGTATCTTTATGTTTTGGGCGGGGAG--AATTAAACAAC--TTTTTTTCCTGACTGTTCTTTACACAGATATTAAAG
i calJac3.chr9              C 0 I 155
s mm10.chr10                126888475 179 + 130694993 aaata---------------------------------------------------taCTTCACTTCCACACCTCTCCTT-------CATAATTTTTCAGCTGACTGGTGATAGATTAACTTTTTGCT-------------ACTTATCCTGAGGCAACAGGAAACTATTCACAGA--CACTCAGACTTAAAAGGTGCCTCTGGTTTTAGGCAGAAAGAAAAATTAAACA-----------------TAATCTTTTCATAGGTCTCAGTT
i mm10.chr10                C 0 I 1
s canFam3.chr10              67338510 200 -  69331447 aaata---------------------------------------------------taCTTTACTTCTATGCCTTTTTCTTCCTTTAC-----TTTCCAGCTGACTAATACTAGA-TAACCTATCCT---------GCATGTCCCA--TGGAGGCATTAGGAAGCTACACATACATATACACAAAATCTGAGGGTGTTTTGATTTTTCAGGAGA-AAAAAAATCAAACAACTTTTTTTTTCCTGAGTGTTCTTTGCATAGGTATTAAAT
i canFam3.chr10             I 207 C 0

a score=622242.000000
s hg38.chr12_GL383550v2_alt    145812 161 +    169178 -----TTCTAAGATAATAATTTACCTAACATTTCATAGTAATAGGCTAGAATTTCTCAATACTCTAATTTAAATA-T-TTAAGAAATATAAGG-CCCTGCCATTCCAATTCTTGGAGAGCTTTTAATCCATTTATTTCTCCCCAGGACCAATCTAAAACTCAAAAGAAT
s panTro4.chr12              31383876 161 + 134246214 -----TTCTAAGATAATAATTTACCTAACATTTCATAGTAATAGGCTAGAATTTCTCAATACTCTAATTTAAATA-T-TTAAGAAATATAAGG-CCCTGCCATTCCAATTCTTGGAGAGCTTTTAATCCATTTATTTCTCCCCAGGACCAATCTAAAACTCAAAAGAAT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78586939 161 - 136387465 -----TTCTAAGATAATAATTTACCTAATGTTTCATAGTAATAGGCTAGAATTTCTCAATACTCTAATTTAAATA-T-TTAAGACATATAAGG-CCCTGACATTCCAATTCTTGGAGAGCTTTTAATCCATTTATTTCTCCCGAGGCCCAATCTAAAACTCAAAAGAAT
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54787128 161 + 123690457 -----TTCTAAGATAATAATTTACGTAATGTTTCATAGTAATAGGCTAGAATTTCTCAATACTCTAATTTAAATA-T-TTAAGAAATATAAGG-TCCTGCCATTCCAATTCTTGGAGAGCTTTTAATCGATTTATTTCTCCCCAGGCCCAATCTAAAACTCAAAAGAAT
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79695143 161 - 134985053 -----TTCTAAGATAATAATTTGCCTAATGTTTCATAGTAATAGGCTAGAATTTCTCAATACTCTAATTTAAATA-T-TTAAGAAATATAAGG-CCCTGCCATTCCAATTCTTGGAGAGCTTTTAATCCATTTATTTCTCCCCAGGCCCAAATTAAAACTCAAAAGAAT
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80795024 161 - 137757926 -----TTCTAAGATAATAATTTACCTAATGTTTCATAGTAATAGGCTAGAATTTCTCAATACTCTAATTTAAATA-T-TTAAGAAATATAAGG-CCCTGCCATTCCAATTCTTGGAGAGCTTTTAATCCATTTATTTCTCCCCAGGCCCAAATTAAAACTCAAAAGAAT
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78747851 161 - 132286798 -----TTCTAAGATACTAATTTACCTAATGTTTCATAGTAATAGGCTAGAATTTCTCAATactctaatttaaata-t-ttaagaaatataaga-CCCTGCCATTCCAATTCTTGGAGAGCttttaatccatttatttctCCCCAGGCCCAAATTAAAACTCAAAAGAAT
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74671722 161 - 128539186 -----TTCTAAGATAATAATTTACCTAATGTTTCATAGTAATAGGCTAGAATTTCTCAATACTCTAATTTAAATA-T-TTAAGAAATATAAGG-CCCTGCCACTCCAATTCTTGGAGAGCTTTTAATCCATTTATTTCTCCCCAAGCCCAAATTAAAACTCAAAAGAAT
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77479711 161 - 124281992 -----TTCTAAAATAATAATTTATCTAATGTTTCATAGTAATAGACTAGAATTTCTCAATACTCtaatttaaata-t-ttaataaatataaGG-CCCTGCCATTCCAATTCTTGGAGAGCTTTTAATCCATTTATTTCTCCCCAGGCCCAAACTAAAACTAAGAAGAAT
i calJac3.chr9              I 155 C 0
s mm10.chr10                126888655 148 + 130694993 -----TGCTATGAGAATAACTTGTCTAATATCTTA--------------AATCTGTTGATCTTAAAACTTCCATGTT-TTAAGAAACGTAAGGACCCCGCCATTTCAATGCCTAGAGGGCTTTTAAAATCCTTATTTCTCTCTTTTCCTAA-CTAAAACTCAAAAGAAT
i mm10.chr10                I 1 I 2466
s canFam3.chr10              67338710 160 -  69331447 TGTCTACCTAAGAAAATAAATTATCTA--GTTACATAGTAATTGGTTAGAATCTCTCAGTATTCTAA-----ATA-TGTTAAGAAACAGAAGG-TCTTATCATTTCAATTCTTAGAGAGCTTTAAATCCACTTATTTCTTCACAACCCCAAACTAAAGTTAAAAAGAAG
i canFam3.chr10             C 0 C 0

a score=1842077.000000
s hg38.chr12_GL383550v2_alt    145973 555 +    169178  
s panTro4.chr12              31384037 555 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78587100 555 - 136387465  
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54787289 555 + 123690457  
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79695304 549 - 134985053  
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80795185 549 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78748012 541 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74671883 548 - 128539186  
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77479872 555 - 124281992  
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67338870 536 -  69331447  
i canFam3.chr10             C 0 I 211
e mm10.chr10                126888803 2466 + 130694993 I

a score=119733.000000
s hg38.chr12_GL383550v2_alt    146528 32 +    169178 CTGCTGCTGCTACCCAATGGTAAAAAGAGGAA
s panTro4.chr12              31384592 32 + 134246214 CTGCTGCTGCTACCCAATGGTAAAAAGAGGAA
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78587655 32 - 136387465 CTGCTGCTGCTACCCAATGGTAAAAAGAGGAA
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54787844 32 + 123690457 ctGCTGCTGCTACCCAATGGTAAAAAGAGGAA
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79695853 32 - 134985053 CTGCTGCTGCTACCCAGTGGTAAAAAGAGGAA
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80795734 32 - 137757926 CTGCTGCTGCTACCCAGTGGTAAAAAGAGGAA
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78748553 32 - 132286798 CTGCTGCTGCTACCCAGTGGTAAAAAGAGGAA
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74672431 32 - 128539186 ctGCTGCTGCTACTCAGTGGTAAAAAGAGGAA
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77480427 32 - 124281992 CTGCTGCTGCTACCCAGCAGTAAAAAGGAAAA
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67339617 31 -  69331447 CTGCTGCTGCTACCCAA-GGGAAAAAGAGGAG
i canFam3.chr10             I 211 C 0
e mm10.chr10                126888803 2466 + 130694993 I

a score=471506.000000
s hg38.chr12_GL383550v2_alt    146560 189 +    169178 AACTTCCTCTTTCAAAGATTGTGTGCATCACAAACCTATCACAAAGATAGAAGGTGAATTAAAAAAAAAAAAAA-CATGCTCTATTTCTTTAGTATATCAACTGATTTTTTTTTAATTGGAAAAGAATATA-AAATTAGCATATTTTTCTAAAAACAGAGTATATGTAATAG-TTTTTTTTTTTAAGGAATT
s panTro4.chr12              31384624 187 + 134246214 AACTTCCTCTTTCAAAGATTGTGTGCATCACAAACCTATCACAAAGATAGAAGGTGAATT--AAAAAAAAAAAA-CATGCTCTATTTCTTTAGTATATCAACTGA-TTTTTTTTAATTGGAAAATAATATA-AAATTAGCATATTTTTCTAAAAACAGAGTATATGCAATAGTTTTTTTTTTTTAAGGAATT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78587687 189 - 136387465 AACTTCCTCTTTCAAAGATTGTGTGCATCACAAACCTATCACAAAGATAGAAGGTGAATTAAAAAAAAAAAAAATCATGCTCTATTTCTTTAGTATATCAACTGA-TTTTTTTTAATTGGAAAAGAATATA-AAATTAGCATATTTTTCTAAAAACAGAGTATATGTAACAG-TTTTTTTTTTTAAGGAATT
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54787876 183 + 123690457 AACTT-CTCTTTCAAAGACTGTGTGCACCACAAACCTACCACAAAGATAGAAGGTGAATT---TAAAAAAAAAT-CATGCTCTACTTCTTTACTATATCAACTGA-TTTTTTTTAATTGGAAAAGAATATA-AAATTAGCATATTTTTCTAAAAACAAAGTATATGTAACAG--TTTTTTTTTTAAGGAATT
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79695885 185 - 134985053 AACTT-CTCTTTCAAAGACTGAGTGCATCACAAACTTATCACAAAGATACAAGGTGAATA-AAAAAAAAAAAAT-CACGCTCTACTCCTTTATTATATCAACTTA--TTTTTTTAATTGGAAAAGAATATAAAAATTAGCATATTTTTCTAAAAACAGAGTATATGTAACAG--TTTTTTTTTTAAGGAATT
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80795766 185 - 137757926 AACTT-CTCTTTCAAAGACTGAGTGCATCACAAACTTATCACAAAGATACAAGGTGAATA-AAAAAAAAAAAAT-CACGCTCTACTCCTTTATTATATCAACTTA--TTTTTTTAATTGGAAAAGAATATACAAATTAGCATATTTTTCTAAAAACAGAGTATATGTAACAG--TTTTTTTTTTAAGGAATT
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78748585 184 - 132286798 AACTT-CTCTTTCAAAGACTGAGTGCATCACAAACTTATCACAAAGATACAaggtgaata-aaaaaaaaaaaat-cacgctCTACTCCTTTATTATAtcaacttg--tttttttaattggaaaagaatata-aaattagcatatttttctaaaaacagaGTATatgtaacag--ttttttttttaaggaatt
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74672463 180 - 128539186 AACTT-CTCTTTCAAAGACTGCGTGCATCACAAACTTATGACAAAGATAGAAGGTGAAT----TAAAAAAAAAT-CACGCTCTATTCCTTTATTATATCAACTTA--TTTTTTTAATTGGAAAAGAATATA-AAATTAGCATATTTTTCTAAAAACAGAGTATATGTAACAG---TTTTTTTTTAAGGAATT
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77480459 179 - 124281992 AGCTT-CTCTTTTAAAGACTGTGTGTATCTCAAACCCATCACAAAGACAGA---TGAATG----AAAAAAAATT-CATGCTCTATTTCCTTATTATATCAACTAACATTTTTTAAATTGGGAAATAATGTA-AAATTAGCATATTTTTCTGAAAATAGAGTATACAT-ACAA--CTTTTTTTTAAAGGAATT
i calJac3.chr9              C 0 I 299
e mm10.chr10                126888803 2466 + 130694993 I
e canFam3.chr10              67339648   0 -  69331447 C

a score=77106.000000
s hg38.chr12_GL383550v2_alt    146749 25 +    169178 TTTCAAACTCTATTGACAAGAGCAG
s panTro4.chr12              31384811 25 + 134246214 TTTCAAACTCTATTGACAAGAGCAG
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78587876 25 - 136387465 TTTCAAACTCTATTGTCAAGAGCAG
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54788059 24 + 123690457 TTTCAAACTCTA-TGACAAGAGCAG
i nomLeu3.chr11             C 0 I 105
s rheMac3.chr11              79696070 25 - 134985053 TTTCAAACTCTATTGACAAGAGCAG
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80795951 25 - 137757926 TTTCAAACTCTATTGACAAGAGCAG
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78748769 25 - 132286798 tttcAAACTCTATTGACAAGAGCAG
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74672643 25 - 128539186 TTTCAAACTCCATTGACAAGAGCAG
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77480937 25 - 124281992 TTTCAAACTCTACTGACAAGAGCAG
i calJac3.chr9              I 299 C 0
e mm10.chr10                126888803 2466 + 130694993 I
e canFam3.chr10              67339648  0 -  69331447 C

a score=30065.000000
s hg38.chr12_GL383550v2_alt    146774 12 +    169178 ATATCCATAAGC
s panTro4.chr12              31384836 12 + 134246214 ATACCCATGAGC
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78587901 12 - 136387465 ATATCCATGAGC
i ponAbe2.chr12             C 0 C 0
s rheMac3.chr11              79696095 12 - 134985053 ATATCCATGAGC
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80795976 12 - 137757926 ATATCCATGAGC
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78748794 12 - 132286798 ATATCCATGAGC
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74672668 12 - 128539186 ATATCCATGAGC
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77480962 12 - 124281992 ATATCCATGAGC
i calJac3.chr9              C 0 C 0
e mm10.chr10                126888803 2466 + 130694993 I
e canFam3.chr10              67339648  0 -  69331447 C
e nomLeu3.chr11              54788083 105 + 123690457 I

a score=1945055.000000
s hg38.chr12_GL383550v2_alt    146786 646 +    169178  
s panTro4.chr12              31384848 645 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78587913 645 - 136387465  
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54788188 647 + 123690457  
i nomLeu3.chr11             I 105 C 0
s rheMac3.chr11              79696107 659 - 134985053  
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80795988 659 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78748806 660 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74672680 655 - 128539186  
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77480974 643 - 124281992  
i calJac3.chr9              C 0 C 0
e mm10.chr10                126888803 2466 + 130694993 I
e canFam3.chr10              67339648   0 -  69331447 C

a score=623218.000000
s hg38.chr12_GL383550v2_alt    147432 176 +    169178 AAGCTCATCATACTCAAGTCTGTGCTAAGCCAAAGGTTTTCTATCACATTATATAGCCTTTACAGGTACACTGACACATAGCCATAACTTGTGCAGCAACACACTCTCTGTTCTGAAAGGGATTACATCTTTTGTCTCCAGAATGCTATGGTAGATTCAAAATAGAAGTCAAGAAT
s panTro4.chr12              31385493 176 + 134246214 AAGCTCATCATACTCAAGTCTGTGCTAAGCCAAAGGTTTTCTATCACATTAGATAGCCTTTACAGGTACACTGACACATAGCCATAACTTGTGCAGCAACACACTCTCTGTTCTGAAAGGGATTACATCTTTTGTCTCCAGAATGCTATGGTAGATTCAAAATAGAAGTCAAGAAT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78588558 176 - 136387465 AAGCTCATCATACTCAAGTCTGTGCTAAGCCAAAGGTTTTTTATCACATTATATAGCCTTTACAGATACACCAACACATAGCCATAACTTGTGCAGCAACACACTCTCTGTTCTGGAAGGGATTACATCTTTTGTCTCCAGAATGCTATGGTAGATTCAAAATAGAAGTCAAGAAT
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54788835 176 + 123690457 AAGCTCATCATACTCAAGTCTGTGCTAAGCCAAAGGTTTTCTATCACATTATATAGCCTTTACAGGTATACTGAGACATAGCCATAACTTGTGCAGCAACACACTCTCTGTTCTGAAAGGGATTACATTTTTTGTCTCCAGAATGCTATGGCAGATTCAAAATAGAAGTCAAGAAT
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79696766 176 - 134985053 AAGCTCATCATACTCAAGTCTGTGCTAAGCCAAAGGTTTTCTATAACATTATACAGCCTTTACAGGTACACTGAGACATAGCCATAACTTGTGGAGCAACGCACTCTCTGTTCTGAAAGGGATTACATTTTTTGTTTCCAGAATGCTATGGTAGATTCAAAACAGAAGTCAAGAAT
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80796647 176 - 137757926 AAGCTCATCATACTCAAGTCTGTGCTAAGCCAAAGGTTTTCTATCACATTATACAGCCTTTACAGGTACACTGAGACATAGCCATAACTTGTGGAGCAACGCACTCTCTGTTCTGAAAGGGATTACATTTTTTGTTTCCAGAATGCTATGGTAGATTCAAAACAGAAGTCAAGAAT
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78749466 176 - 132286798 AAGCTCATCATACTCAAGTCTGTGCTAAGCCAAAGGTTTTCTATCACATTATACAGCCTTTACAGGTACACTGAGACATAGCCATAACTTGTGGAGCAACACACTCTCTGTTCTGAAAGGGattacattttttgtttccaGAATGCTATGGTAGATTCaaaacagaagtcaagaat
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74673335 176 - 128539186 AAGCTCATCATACTCAAGTCCGTGCTAAGCCAAAGGTTTTCTATCACATTATACAGCCTTTACAGGTACACTGAGACATAGCCATAACTTGTGGAGCAACACACTCTCTGTTCTGAAAGGGATTACATTTTTTGTTTCCAGAATGCTATGGTAGATTCAAAACAGAAATCAGGAAT
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77481617 172 - 124281992 AAGCTCATCATAGTCAAGTCTGCACCAAGCCAAAGGTTTTCTGTCACATTATATAGCCTTTACAGGTGCACTGAGACATAGCCATAACCTGTGCAACAACACACTCTCTGTTCTGAAAGGGATAACACTTTTTGTCTCCAGAATGCTATGGTAG----AAAACAGAAGTCAAGAGT
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67339648 175 -  69331447 AGACTTATCATAGTCAAGTCTGTGCTAATTCAAAGCTTTGCTATTATGTCGTACAGCCTTTAAAGGCACATTAGTATGCAGCCATAACCTGTGCTGCAGGGTAGTCTCTGTTCTGAAAAGTACTAC-TTTTTTGTCTCGGGAATACTGTGGGAGTCGCAGAATAGAAGTCCAGGAC
i canFam3.chr10             C 0 C 0
e mm10.chr10                126888803 2466 + 130694993 I

a score=290818.000000
s hg38.chr12_GL383550v2_alt    147608 74 +    169178 TGTTAGAATAACAGTAAGACATGCTGTGATTTCACTTCCATTCCTTATCCACCCCCATCGAAAAGTATCCCAGA
s panTro4.chr12              31385669 74 + 134246214 TGTTAGAATAACAGTAAGACATGCTGTGATTTCACTTCCATTCCTTATCCACCCCCATCGAAAAGTATCCCAGA
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78588734 74 - 136387465 TGTTAGAATAACAGTAAGACATGCTGTGATTTCATTTCCATTCCTTATCCACCCCCATCGAAAAGTATCCCAGA
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54789011 74 + 123690457 TGTTAGAATAACAGTAAGACATGCTGTGATTTCACTTCCATTCCTTATCCACCCCCATCGAAAAGTATCCCAGG
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79696942 74 - 134985053 TGTTAGAATAACAGTAAGACATGCTGTGATTTCACTTCCATTCCTTATCCACCCTCATCGAAAAGTATCCCAGG
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80796823 74 - 137757926 TGTTAGAATAACAGTAAGACATGCTGTGATTTCACTTCCATTCCTTATCCACCCTCATCGAAAAGTATCCCAGG
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78749642 74 - 132286798 tgttAGAATAACAGTAAGACATGCTGTGATTTCACTTCCATTCCTTATCCACCCTCATCGAAAAGTATCCCAGG
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74673511 74 - 128539186 TGTTAGAATAACAGTAAGACATGCTGTGATTTCACTTCTATTCCTTATCCACCCCCATCGAAAAGTATCCCAGG
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77481789 74 - 124281992 TGCTAGCATTACAGTAAGACAGGCTGTGATTTCAATTCCATTCCTTATCCACCCCCATCAAAAAGTATCCCAGG
i calJac3.chr9              C 0 C 0
s mm10.chr10                126891269 74 + 130694993 TATTATGACATAAGGAAGACAGGCTATGATGTCACTTGGATTCTCTATCTATCCCCATTTCACCGTATCCCAGA
i mm10.chr10                I 2466 I 211
s canFam3.chr10              67339823 70 -  69331447 TGCGGGGATCAAAGTTAG----GCTGTGATTTTGTGTCCATTCTTCATCCACCTGCTTTCAAAAGGATCCCAAG
i canFam3.chr10             C 0 C 0

a score=44803.000000
s hg38.chr12_GL383550v2_alt    147682 12 +    169178 TGCAAGATCTTA
s panTro4.chr12              31385743 12 + 134246214 TGCAAGATCTTA
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78588808 12 - 136387465 TGCAAGATCTTA
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54789085 12 + 123690457 TGCAAGATCTTA
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79697016 12 - 134985053 TGCAAGATCTTA
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80796897 12 - 137757926 TGCAAGATCTTA
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78749716 12 - 132286798 TGCAAGATCTta
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74673585 12 - 128539186 TGCAAGATCTTA
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77481863 12 - 124281992 TACAAGATCTTA
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67339893 12 -  69331447 AACAAGATCATA
i canFam3.chr10             C 0 I 4
e mm10.chr10                126891343 211 + 130694993 I

a score=9700.000000
s hg38.chr12_GL383550v2_alt    147694 5 +    169178 GCTCC
s panTro4.chr12              31385755 5 + 134246214 GTTCC
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78588820 5 - 136387465 GCTAC
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54789097 4 + 123690457 GCTC-
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79697028 5 - 134985053 GCTCC
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80796909 5 - 137757926 GCTCC
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78749728 5 - 132286798 gctcc
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74673597 5 - 128539186 GCTCC
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77481875 5 - 124281992 GCCCC
i calJac3.chr9              C 0 C 0
e mm10.chr10                126891343 211 + 130694993 I
e canFam3.chr10              67339905 4 -  69331447 I

a score=27549.000000
s hg38.chr12_GL383550v2_alt    147699 26 +    169178 tttttt-ttttttttttttt---------ttgagat
s panTro4.chr12              31385760 27 + 134246214 ttttttcttttttttttttt---------ttgagat
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78588825 23 - 136387465 ttt----ttttttttttttt---------ttgagat
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54789101 20 + 123690457 -------Ctttctttttttt---------ttgagat
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79697033 32 - 134985053 ttt----ctttctttttttttttttttttttgagac
i rheMac3.chr11             C 0 I 299
s macFas5.chr11              80796914 32 - 137757926 ttt----ctttctttttttttttttttttttgagac
i macFas5.chr11             C 0 I 299
s papAnu2.chr11              78749733 20 - 132286798 ttt----ctttctttttttc------------agaa
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74673602 20 - 128539186 ttt----ctttctttttttc------------agaa
i chlSab2.chr11             C 0 C 0
e mm10.chr10                126891343 211 + 130694993 I
e canFam3.chr10              67339905  4 -  69331447 I
e calJac3.chr9               77481880  0 - 124281992 C

a score=650632.000000
s hg38.chr12_GL383550v2_alt    147725 272 +    169178 ggagtctcactctgtggcccagactggagtgcagtggcatgatctcggctcactgcaacctccatctcccagattcaagtgattctcctgcctcagcctccatagtagttgggactacaggtgtgctccactacgcccagctaatttttttgtatttttagtagacacggggtttcaccatgttggccacgctggtctcgatctcctgacctcgtgatccgcccgcctcggcctcccaaactgctgggaggcataagccaccgcaccaggcc
s panTro4.chr12              31385787 272 + 134246214 ggagtctcactctgtggcccagactggagtgcagtggcatgatctcggctcactgcaacctccatctcccagattcaagtgattctcctgcctcagcctccatagtagttgggactacaggtgtgctccactacgcccagctaatttttttgtatttttagtagacacggggtttcaccatgttggccacgctggtctcgatctcctgacctcgtgatccgcccgcctcggcctcccaaactgctgggaggcataagccactgcgccaggcc
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78588848 272 - 136387465 ggagtctcactctgtggcccaggctggagtgcagtggcatgatctcagctcactgcaacctccatctcccagattcaagcgattctcctgcctcagcctccagagtagttgggactacaggtgtgcaccaccacgcccagctaatttttttgtatttttagtagacacggggtttcaccatgttggccacgctggtctcgatctcctgacctcgtgatccgtccacctcggcctcccaaactgctgggaggcatgagccaccgcgccaggcc
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54789121 272 + 123690457 ggagtctcgctctgcggcccaagctagagtgcagtgacatgatctcggctcactgcaacctccatctcccaggttcaagcaattctcctgcctcagcctcctgagtagttgggactacacgtgtgcgccaccatgcccagctaatttttttgtatttttagtaaacacagggtttcaccatgttgaccacgctggtctctatctcctgacctcgtgatccacccgcctcagcctcccaaactgctaggagacacgagccaccgcgccaggcc
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79697364 272 - 134985053 ggagtctcactctgtggcccaggctggagtgcagtggcacgacctcggctcactgcaacttccatctcccaggtacaagcgattctcctgcctcagcctccagagtagctgggactataggcatgcgccaccacgcccagctaaattttttgtatgtttggtagacacagggtttcaccatgttggccactctggtctcgatctcctgaccttgtgatccgcccgcctcagcctcccaaagtgctgggaggcacaagccactgtgccaggcc
i rheMac3.chr11             I 299 C 0
s macFas5.chr11              80797245 272 - 137757926 ggagtctcactctgtggcccaggctggagtgcagtggcacgacctcggctcactgcaacttccatctcccaggttcaagcgattctcctgcctcagcctccagagtagctgggactataggcatgcgccaccacgcccagctaatttttttgtatgtttagtagacacagggtttcaccatgttggccactctggtctagatctcctgaccttgtgatccgcccgcctcagcctcccaaagtgctgggaggcacaagccactgtgccaggcc
i macFas5.chr11             I 299 C 0
s papAnu2.chr11              78749753 272 - 132286798 ggagtctcactttgtggcccaggctggagtgcagtggcacgacctcggctcactgcaacttccatctcccaggttccagcgattctcctgcctcagcctccagagtagctgggactataggcatgcgccaccacgcccagctaatttttttgtatgtttagtagacacagggtttcaccatgttggccactctggtcttgatctcctgaccttgtgatccgcccgcctcagcctcccaaagtgctgggaggcacaagccactgtgccaggcc
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74673622 271 - 128539186 ggagtctcactctgtggcccaggctggagtgcagtggcacgacctcggctcactgcaacttccatctcccaggttcaagcgattctcctgcctcagcctccagagtagctgggactataggcatgcgccaccacgcccagctaatttttttgtatgtttagtagacacagggtttcaccatattggccactctggtctcgatctcctgacc-tgtgatccgcccgcctcagcctcccaaagtgctgggaggcacaagccactgtgccaggcc
i chlSab2.chr11             C 0 C 0
e mm10.chr10                126891343 211 + 130694993 I
e canFam3.chr10              67339905   4 -  69331447 I
e calJac3.chr9               77481880   0 - 124281992 C

a score=6754.000000
s hg38.chr12_GL383550v2_alt    147997 3 +    169178 TCT
s panTro4.chr12              31386059 3 + 134246214 TCT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78589120 3 - 136387465 TTT
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54789393 3 + 123690457 TCC
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79697636 3 - 134985053 TCC
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80797517 3 - 137757926 TCC
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78750025 3 - 132286798 tcc
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74673893 3 - 128539186 TCC
i chlSab2.chr11             C 0 C 0
s canFam3.chr10              67339909 3 -  69331447 TCT
i canFam3.chr10             I 4 C 0
e mm10.chr10                126891343 211 + 130694993 I
e calJac3.chr9               77481880 0 - 124281992 C

a score=82047.000000
s hg38.chr12_GL383550v2_alt    148000 25 +    169178 TTTCATTATTAGACTATCTCACACA
s panTro4.chr12              31386062 25 + 134246214 TTTCATTATTAGACTATCTCACACA
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78589123 25 - 136387465 TTTCATTATTAAACTATCTCACACA
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54789396 25 + 123690457 TTTGATTATTAAAATATCTCACACA
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79697639 25 - 134985053 TTTCATTATTAAAATATCTCACACA
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80797520 25 - 137757926 TTTCATTATTAAAATATGTCACACA
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78750028 25 - 132286798 tttcattattaaaatatctcaCACA
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74673896 25 - 128539186 TTTCATTATTAAAATATCTCACACA
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77481880 25 - 124281992 TTTCATTATTAAAATCTCTCACACA
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67339912 22 -  69331447 TTTCACTATTAAAGTCTCTCAC---
i canFam3.chr10             C 0 C 0
e mm10.chr10                126891343 211 + 130694993 I

a score=281774.000000
s hg38.chr12_GL383550v2_alt    148025 69 +    169178 CTCATTGAGTCACATAGCTTGCCCATAATTACAAAGTAGAACTAAATTCCATC-TACTTTGTTTAAATGG
s panTro4.chr12              31386087 69 + 134246214 CTCATTGAGTCACATAGCTTGCCCATAATTACAAAGTAGAACTAAATTCCATC-TACTTTGTTTAAATGG
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78589148 69 - 136387465 GTCATTGAGTCACATAGCTTGCCCATAATTATAAAGTAGAACTAAATTCCATC-TACTTTGTTTAAATGG
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54789421 69 + 123690457 CTCATTGAGTCACATAGCTTGCCCATAATTATAAAGTAGAACTAAATGCCATC-TCCTTTGTTTAAATGG
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79697664 69 - 134985053 CTCATTGAGTCACATAGCTTGCCCATAATTATAAAGTAGAACTAAATTCCATC-TACTTTGTTTAAATGG
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80797545 69 - 137757926 CTCATTGAGTCACATAGCTTGCCCATAATTATAGAGTAGAACTAAATTCCATC-TACTTTGTTTAAATGG
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78750053 69 - 132286798 CTCATTGAGTCACATAGCTTGCCCATAATTATAAAGTAGAACTAAATTCCATC-TACTTTGTTTAAATGG
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74673921 69 - 128539186 CTCATTGAGTCTCATAGCTTGCCCATAATTATAAAGTAGAACTAAATTCCATC-TACTTTGTTTAAATGG
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77481905 69 - 124281992 CTCATTGACTCACATAGCTTGCCCATAATTTTAAAGTAGAACTAAATTCCATC-TACTTTGTTTAAATGG
i calJac3.chr9              C 0 C 0
s mm10.chr10                126891554 69 + 130694993 CTCAGGCAGTCACATGGC-TGACCATGACTATGAAGCAGAACTAATCTCCATCATACTCTCTTCACACGG
i mm10.chr10                I 211 I 11
s canFam3.chr10              67339934 64 -  69331447 -----TGAGTCACACAGCTTGCCTGTAATTAAAAAGTAGAACTAAATTCCACC-TGTTTGGCATAAACAG
i canFam3.chr10             C 0 C 0

a score=448052.000000
s hg38.chr12_GL383550v2_alt    148094 126 +    169178 TACATACTTTGTATTCTTTTCACATACGAAGTTCTTTCAAATTTCAAATACTGAATGTACTTTTCATTTCTTTATTCATTATTTCCACTCGTAACACTCTGGAGGGGAAGTGATTTC--ATATTAGTT
s panTro4.chr12              31386156 126 + 134246214 TACATACTTTGTATTCTTTTCACATACGAAGTTCTTTCAAATTTCAAATACTGAATGTACTTTTCATTTCTTTATTCATTATTTCCACTCGTAACACTCTGGAGGGGAGGTGATTTC--ATGTTAGTT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78589217 126 - 136387465 TACATACTTTGTATTCTTTTCACATGGGAAGTTCTTTCAAATTTCAAATACTGAATGTACTTTTCATTTCTTTATTCATTATTTTCATTCGTAACACTCTGGAGGGGAGGTGATTTC--AAGTTAGTT
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54789490 126 + 123690457 TACATACTTTGTATTCTTTTCACACAGGAAGTTCTTTCAAATTTCAAATACTGAATGTACTTTTCATTTCTTTATTCATTATTTCCACTCGTAACACTCTGGAGGGGAGGTGATTTC--ATGTTAGTT
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79697733 126 - 134985053 CACATACTTTGTATTCTTTTCACATAGGAAGTTCTTTCAAATTTCAAATACTGAATGTACTTTTCATTTCTTTATTCATTATTTCCACTCATAACACTCTGGAGGGGAAGTGATTGC--ATGTTAGCT
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80797614 126 - 137757926 CACATACTTTGTATTCTTTTCACATAGGAAGTTCTTTCAAATTTCAAATACTGAATGTACTTTTCATTTCTTTATTCATTATTTCCACTCATAACACTCTGGAGGGGAAGTGATTGC--ATGTTAGCT
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78750122 126 - 132286798 TACATACTTTGTATTCTTTTCACATAGGAAGttctttcaaatttcaaatactgaatgtacttttcatttctttattcattatttccACTCATAACACTCTGGAGGGGAAGTGATTGC--ATGTTAGCT
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74673990 126 - 128539186 TACATACTTTGTATTCTTTTCACATAGGAAGTTCTTTCAAATTTCAAATACTGAATGTACTTTTCATTTCTTTATTCATTATTTCCACTCATAACACTCTGGAGGGGAAGTGACTGC--ATGTTAGCT
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77481974 126 - 124281992 TACATACTTTGTATTCTTTTCATATAGGAAGTTCTTTCAAATTTCAAATACTAAATGTACTTCTCCTTTCTTTTTTCATTATTTCCACTCGTAACACTCTGGAGAGTAGGTGATTTC--ATGTTAGTT
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67339998 119 -  69331447 TATATATTCTGAATTGTTTCCACA---GTAGTTCTTTCACATTTCAAATACCAAATGTACTTC-----TCTTTATGCATTATTTCCACTCACAGCACTCTGGAGGGTAAGTGATTTCATATGTTAGT-
i canFam3.chr10             C 0 C 0
e mm10.chr10                126891623  11 + 130694993 I

a score=880838.000000
s hg38.chr12_GL383550v2_alt    148220 224 +    169178 TTTACCTGGTGGTGTTGTTTTAATCCAAAATGTAACCTGAATATTTCATTGACAAGTGAGCAGTCTCCACTAAGGTTAGCAGCTCGAACCTATC----ACACAGA-----AGACAAATAAAAAG-AAATAAACGCTCATGCTCTATATATCTTTATGATATCAACCAATTTTTAAAAATTAGAAAAGAATATAAAATTAGCATCTTTGTCTGAGAAAAGAGTATTTGTGACACT
s panTro4.chr12              31386282 224 + 134246214 TTTACCTGGTGGTGTTGTTTTAATCCAAAATGTAACCTGAATATTTCATTGACAAGTGAGCAGTCTCCACTAAGGTTAGCAGCTCGAACCTATC----ACACAGA-----AGACAAATAAAAAG-AAATAAATGCTCATGCTCTATATATCTTTATGATATCAACCAATTTTTAAAAATTAGAAAAGAATATAAAATTAGCATCTTTGTCTGAGAAAAGAGTATTTGTAACACT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78589343 224 - 136387465 TTTACCTGATGGTGTTGTTTTAATCCAAAATGTAACCTGAATATTTCATTGACAAGTGAGCAGTCTCCACTAAGGTTAGCAGCTCGAACCTATC----ACACAGA-----AGACAAATAAAAAG-AAATAAATGCTCATGCTCTATATATCTTTATGATATCAACCAATTTTTAAAAATTAGAAAAGAATATAAAATTAGCATCTTTGTCTGAGAAAAGAGTATTTGTAAGACT
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54789616 224 + 123690457 TTTACCTGGTGGTGTTGTTTTAATCCAAAATGTAACCTGAACATTTCATTAATAAGTGAGCAGTCTCCACTAAGGTTAGCAGCTCGAACCTATC----ACACAGA-----AGACAAATAAAAAG-AAATAAATGCTCATGCTCTATATATCTTTATGATATCAACCAATTTTTAAAAATTAGAAAAGAATATAAAATTAGCATCTTTGTCTGAGAAAAGAGTATTTGTAAGACT
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79697859 225 - 134985053 TTTACCTGGTGGTGTTGTTTCAATCCAAAATGTAACCTGAATATTTCATTGACAAGTGAGCAGTCTCCACTAAGGTTAGCAGCTCGAACCTATC----ACACAGA-----AGACAGACAAAAAGAAAATAAACACTCATGCTCTATATATCTTTATGATATCAACCAATTTTTTAAAATTAGAAAAGAATATAAAATTAGCATCTTTGTCTGAGAAAAGAGTATTTGTACTACT
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80797740 225 - 137757926 TTTACCTGGTGGTGTTGTTTCAATCCAAAATGTAACCTGAATATTTCATTGACAAGTGAGCAGTCTCCACTAAGGTTAGCAGCTCGAACCTATC----ACACAGA-----AGACAGACAAAAAGAAAATAAACGCTCATGCTCTATATATCTTTATGATATCAACCAATTTTTTAAAATTAGAAAAGAATATAAAATTAGCATCTTTGTCTGAGAAAAGAGTATTTGTACTACT
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78750248 225 - 132286798 TTTACCTGGTGGTGTTGTTTCAATCCAAAATGTAACCTGAATATTTCATTGACAAGTGAGCAGTCTCCACTAAGGTTAGCAGCTCGAACCTATC----ACACAga-----agacagacaaaaagaaaataaacgcTCATGCTCTGTATATCTTTATGATAtcaaccaattttttaaaattagaaaagaacataaaattagCATCTTTGTCTGAGAAAAGAGTATTTGTACTACT
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74674116 225 - 128539186 TTTACCTGGTGGTGTTGTTTCAATCCAAAATGTAACCTGAATATTTCATTGAAAAGTGAGCAGTCTCCACTAAGGTTAGCAGCTCGAACCTATC----ACACAGA-----AGACAGACAAAAAGAAAATGAACGCTCATGCTCTATATATCTTTATGATATCAACCAATTTTTTAAAATTAGAAAAGAATATAAAATTAGCATCTTTGTCTGAGAAAAGAGTATTTGTACTACT
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77482100 225 - 124281992 TTTACCTGGTGGTGTTGTTTTAATCCAAAATGGAACCTGAATATTTCATTTACAAGTGAGCAGTCTCCACTAAGGTTAGCAGCTCGAACCTATC----AAACAGA-----AGACAAAGAAAAAGAAAATAAACGCTCGTGTTCTATATATCTTTATGATATCAACCTATGTTTTAAAATTAGAAAAGAATATAAAATTTGCATCTTTGTCTGAGAAAAGAGTATTTGTAAGACC
i calJac3.chr9              C 0 C 0
s mm10.chr10                126891634 217 + 130694993 TTTACCTGATGATGTTGCTTTAATCCAAAACGCAGCCTGAAGAGTTCGTTCACAAGGGAGCAGTCCCCGCTGAGGCTTGCGGCTCGAATCTGTCACAAACACAGA-----GGGCAAGTGAGAAGCAAAGAAG-----ATG-TCTGTCTCTCC-----ACACCAGCCAACCTTT-AAAACTGGAAAAGAAGAGAAAACCACCATGTATTTCTGAGACTCCAGTGTATCTGACACT
i mm10.chr10                I 11 C 0
s canFam3.chr10              67340117 203 -  69331447 TTTACCTGATGATGTCGTTTCAATCCAAAATGCAACCTGAAAATTTCATTTACAAGTGAGCAGTCTCCACTAAGGTTAGCAGCTCGAACCTATC----ACAAAGACAGAGAGGCAAACAGAAAGAAATTAAGTGCTTGTGCTCTAAA---------------------------AACTCTGTAAAAGAATTTAAAATTAACATGCCTTTCTGAGAATAGAGTATCCACAGGACT
i canFam3.chr10             C 0 I 404

a score=1061526.000000
s hg38.chr12_GL383550v2_alt    148444 311 +    169178 TCTTCTTAAAGGACTTTTTAAACTCT-------------ATTGACAACGAGAGCAAATATCTATGAGCTATGCT---------AGACAATGCCAAATACACTGGAGAGATGGGGAAAAGTTCAATCGCCTACCAAAGGAAATTTTCTAAACTTTATGC-GTAGCTTTACTGACAGAACTAATTTC-TTTTGGAACCAAAAGTCAGAGAGCTAGACCTCAGAGTTAAA----CTACACACTCTACAA-----GATACAAATACTTGTAGAAATTGCC-AAAAGTACTTCAAGAAAGCATTCTT-GAA-------ATAAACTGAGTTTCAATGTGACCTTAAAACTGAATGCATT
s panTro4.chr12              31386506 310 + 134246214 TCTTCTTAAAGGACTTTTTAAACTCT-------------ATTGACAACGAGAGCAAATATCTATGAGCTATGCT---------AGACAATGCCAAATACACTGGAGAGAT-GGGAAAAGTTCAATCACCTACCAAAGGAAATTTTCTAAACTTTATGC-GTAGCTTTACTGACAGAACTAATTTC-TTTTGGAACCAAAAGTCAGAGAGCTACACCTCAGAGTTAAA----CTACACACTCTACAA-----GATACAAATACTTGTAGAAATTGCC-AAAAGTACTTCAAGAAAGCATTCTT-GAA-------ATAAACTGAGTTTCAATGTGAGCTTAAAACTGAATGCATT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78589567 312 - 136387465 TCTTCTTAAAGGACTTTTTAAACTCT-------------ATTGACAACAAGAACAAATATCTATGAGCTATGCT---------AGACAATGCCAAATACACTGGAGAGATGGGGAAAAGTTCAATTGCCTACCAAAGGAAATTTTCTAAACTTTATGCTGTAGCTTTACTGACAGAACTAATTTC-TTTTGGAACCAAAAGTAAGAGAGCTAGACCTCAGAGTTAAA----CTACACACTCTACAA-----AACACAAATACTTGTAGAAATTGCC-AAAAGTACTTCAAGAAAGCATTCTT-GAA-------ATAAACTGAGTTTCAATGTGAGCTTAAAATTGAATGCATT
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54789840 308 + 123690457 TCTTCTTAAAGGACTTTATAAACTCT-------------ATTG---ACGAGAGCAAATATCTGTGAGCTATGCT---------AGACAATGCCAAATACACTGGAGAGATGGGGAAAACTTCAATCACCTACCAAAGTAAATTTTCTAAAC-TTATGCTATAGCTTTACTGACAGAACTAATTTC-TTTTGGAACCAAAAGTCAGAGAGCTAGACCTCAGAGTTAAA----CTACACACTCTACAA-----GATACAAATACTTGTAGAAATTGCC-AAAAGTACTTCAAGAAAGCATTCTT-GAA-------ATAAACTGAGTTTCAATGTGAGCTTAAAACTGAATGCATT
i nomLeu3.chr11             C 0 I 1589
s rheMac3.chr11              79698084 314 - 134985053 TCTTCTTAAAGGACTTTTTAAACTCT-------------ATTGACGACAAAAGCAAGTATCTATGAGCTATGCT---------AGACAATGCCAAATACACTGGAGAGATGGGGAAAAGTTCAGTCGCCTACCAAAGGAAATTTTCTAAACTTTATGCTGTAGCTTTACTGACAGAACTAATTTCTTTTTGGAACCAAAGGTCAGAGAGCTAGACCTCAGAGTTAAA----TTACACACTCTATAA-----GATACAAATACTTGTAGAAATTACTAAAAAGTACTTCAAGAAAGCATTCTT-GAA-------ATAAACTGAGTTTCAAAGTGAGCTTAAAACGGAATGCATT
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80797965 314 - 137757926 TCTTCTTAAAGGACTTTTTAAACTCT-------------ATTGACGACAAAAGCAAGTATCTATGAGCTATGCT---------AGACAATGCCAAATACACTGGAGAGATGGGGAAAAGTTCAGCCGCCTACCAAAGGAAATTTTCTAAACTTTATGCTGTAGCTTTACTGACAGAACTAATTTCTTTTTGGAACCAAAGGTCAGAGAGCTAGACCTCAGAGTTAAA----TTACACACTCTATAA-----GATACAAATACTTGTAGAAATTACTAAAAAGTACTTCAAGAAAGCATTCTT-GAA-------ATAAACTGAGTTTCAAAGTGAGCTTAAAACGGAATGCATT
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78750473 314 - 132286798 TCTTCTTAAAGGACTTTTAAAACTCT-------------ATTGACGACAAAAGCAAGTATCTATGAGCTATGCT---------AGACAATGCCAAATACACTGGAGAGATGGGGAAAAGTTCAGTCGCCTACCAAAggaaattttctaaactttatgCTGTAGCTTTACTGACAGAACTAATTTCTTTTTGGAACCAAAGGTCAGAGAGCTAGACCTCAGAGTTAAA----TTACACACTCTACAA-----GATACAAATACTTGTAGAAATTACTAAAAAGTACTTCAAGAAAGCATTCTT-GAA-------ATAAATTGAGTTTCAAAGTGAGCTTAAAACGGAATGCATT
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74674341 314 - 128539186 TCTTCTTAAAGGACTTTTTAAACTCT-------------ATTGACGACAAAAGCAAATATCTATGAGCTATGCT---------AGACAATGCCAAATACACTGGAGAGATGGGGAAAAGTTCAGTCGCCTACCAAAGGAAATTTTCTAAACTTTATGCTGTAGCTTTACTGACAGAAATAATTTCTTTTTGGAACCAAAAGTCAGAGAGCTAGACCTCAGAGTTAAA----TTACACACTCTACAA-----GATACAAATACTTGTAGAAATTACTAAAAAGTACTTCAAGAAAGCATTCTT-GAA-------ATAAACTGAGTTTCAAAGTGAGCTTAAAACGGAATGCATT
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77482325 307 - 124281992 TTTTCTTAAAGAACTTT-TAAACTCT-------------ATTG---ACAAGAACAGATATCTATGAGCTACGCT---------AGACAATGCCAAATATGTGGTAGAGATGGGGAAAAGTTGAATCGCCTACCAAAGGAAATTTTCTCAATTTCATGCTGTAGCTTTCCTGACAGAACTAATTTC-TTCTGGGACCAAAAGTCAGAGAGCTAGACCTCAGAGTTAAAA--TATACACACTCAACAA-----GATAGAAATACTTGTAGAAATTAAC-AAAAGTACTTCAAGAATGCA-TCTT-TAA-------ATAAAC--AGGTTCAGCATGAGCTTCAAATTGAATGCATT
i calJac3.chr9              C 0 C 0
s mm10.chr10                126891851 257 + 130694993 TTCTTCTAGAAAATTTCTT----------------------------------TAAGCATCTGTTAGAAAGGCCTCAATCCCAAGAGCGTGTTATACAAATCAGGGCACTGGGG------------------CAGGGGGGATTTTCTAAACTTTACCC-GGAGCCTCATGGGCAGCAATAATTTC-TTCTGGAACAAAGGGCC--AGAGTTGGACCTGCCGGTTAAA----GTTCATGATCTCTAAAGGATAATACAGACACTTCTAGAAATTACC--AAAGGACTTCAAGAAAGCATCCTTCCAA-------AAAAACTAC---------------------------CATT
i mm10.chr10                C 0 C 0
s canFam3.chr10              67340724 329 -  69331447 TTTTTTTAAAGGATGTTTTAAACTCTGACATAAGACTACATTAAGAAAAAGAGCTGATATCCATGGGCT--------------AGACAATGCAAAATAAACTGTGG--GTCGGGAGAGGGTCAACCATTTATCAAAGGGAATCTTCAAAACTTTACACTGTAACCTTATTGAAAGAACTAATTTC-TTTTGAAACCAAAAATCAGAAAGTTGGACCTCAGAGTGGAAAAGTCCATGTTCTCTATGA-----GATACAAACATTTCTAGAAATTACC-AAAAGGACTGCAAGAAAGCATTCTT-CCAAAGATCTACAAACTGAATTTCAACGTAAGCTTAAAATTAAACACATT
i canFam3.chr10             I 404 C 0

a score=1902480.000000
s hg38.chr12_GL383550v2_alt    148755 520 +    169178  
s panTro4.chr12              31386816 520 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78589879 521 - 136387465  
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54791737 519 + 123690457  
i nomLeu3.chr11             I 1589 C 0
s rheMac3.chr11              79698398 518 - 134985053  
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80798279 518 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78750787 518 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74674655 518 - 128539186  
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77482632 522 - 124281992  
i calJac3.chr9              C 0 I 308
s mm10.chr10                126892108 436 + 130694993  
i mm10.chr10                C 0 C 0
s canFam3.chr10              67341053 552 -  69331447  
i canFam3.chr10             C 0 I 1

a score=832032.000000
s hg38.chr12_GL383550v2_alt    149275 234 +    169178 TAATCGAAGTTATATAGTATAGGCTTGAGATTTA--------------GATTATTTT------------------------AATTAACTCTTCAATTAATGACATCCAAG---TAT---ATGCATATGCAGAATA--CGCTCTCTCTAGGAGCATA------------TTCCAAGAGCAATCCAACGTGCTTAGTAATAAATAT-CTTTTTATGTTGTATTTTTGAAAAGAGCATGTTTTACTCTAGGGCAAGCAAGGAGCT----CTA-TGGAAGGCAGCTGGGCAAGCTAGTTAAA-----------------------------------------
s panTro4.chr12              31387336 236 + 134246214 TAATCTAAGTTATATAGTATAGGCTTGAGATTTA--------------GATTATTTT------------------------AATTAACTCTTCAATTAATGACATCCAAG---TAT---ATGCATATGCAGAATACGCGCTCTCTCTAGGAGCATA------------TTCCAAGAGCAATCCAACGTGCTTAGTAATAAATAT-CTTTTTATGTTGTATTTTTGAAAAGAGCATGTTTTACTCTAGGGCAAGCAAGGAGCT----CTA-TGGAAGGCAGCTGGGCAAGCTAGTTAAA-----------------------------------------
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78590400 234 - 136387465 TAATCTAAGTTATAAAGTATAGGCTTGAGATTTA--------------GATTATTTT------------------------AATTAACTCTTCAATTAATGACATCCAAG---TAT---ATGCATATGCAGAATA--TGCTCTCTCTAGGAGCATA------------TTCCAAGAGCAATCCAACATGCTTAGTAATAAATAT-GTTTTTATGTTGTATTTTTGAAAAGAGCATGTTTTACTCTAGGGCaagcaaggagct----cta-tggaaggcagccaggcaagctagttaaa-----------------------------------------
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54792256 234 + 123690457 TAATCTAAGTTATAAAGTATAGGCTTGAGATTGA--------------GATTATTTT------------------------AATCAACTCTTCAAACAATGACATCCAAG---TAT---ATGCATATGCAGAATA--TGCTCTCTCTAGGAGCATA------------TTCCAAGAGCGATCCAACGTGCTTCGTAATAAATAT-CTTTTTACGTTGTATTTTTGAAACAAGCATGTTTTACTCTAGGGCAAGCAAGGAGCT----CTA-TGGAAGGCAGCCGGGCAAGCTAGTTAGA-----------------------------------------
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79698916 232 - 134985053 TAATCTAAGTTATGAAGTATAGGCTTGAGATTTA--------------GATTATTTT------------------------AATCAACTCTTCAATTAATGACACCCAAG---TAT---ATGCATATGCAGAATA--CGCTCTCTCTAGGAGCATA------------TTCC--GAGCAATCCAACGTGCTTAGTAATAAATAT-CTTTTCATGTTGTATTTTTGAAACGAGCATGTTTTACTCTAGGGCAAGCAAGGAACT----CTA-TGGAAGGCAGCTGGGCAAGCTAGTTAAA-----------------------------------------
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80798797 232 - 137757926 TAATCTAAGTTATGAAGTATAGGCTTGAGATTTA--------------GATTATTTT------------------------AATCAACTCTTCAATTAATGACACCCAAG---TAT---ATGCATATGCAGAATA--CGCTCTCTCTAGGAGCATA------------TTCC--GAGCAATCCAACGTGCTTAGTAATAAATAT-CTTTTCATGTTGTATTTTTGAAACGAGCATGTTTTACTCTAGGGCAAGCAAGGAACT----CTA-TGGAAGGCAGCTGGGCAAGCTAGTTAAA-----------------------------------------
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78751305 232 - 132286798 taatcTAAGTTATGAAGTATAGGCTTGAGCttta--------------gattatttt------------------------aattaactCTTCAATTAATGACATCCAAG---TAT---ATGCATATGCAGAATA--TGCTCTCTCTAGGAGCATA------------TTCC--GAGCAATCCAATGTGCTTAgtaataaatat-cttttcatgttgTATTTTTGAAACGAGCATGTTTTACTCTAGGGCAAGCAAGGAACT----CTA-TGGAAGGCAGCTGGGCAAGCTAGTTAAA-----------------------------------------
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74675173 232 - 128539186 TAATCTAAGTTATGAAGTATAGGCTTGAGATTTA--------------GATTATTTT------------------------AATTAACTCTTCAATTAATGACATCCAAG---TAC---ATGCATATGCAGAATA--CGCTCTCTCTAGGAGCATA------------TTCC--GAGCAATCCAACGTGCTTAGTAATAAATAT-CTTTTCATGTTGTATTTTTGAAACGAGCATGTTTTACTCTAGGGCAAGCAAGGAACT----CTA-TGGAAGGCAGCTGGGCAAGCTAGTTAAA-----------------------------------------
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77483462 234 - 124281992 TAATCTAAGTTATAAAGTATAGGCTTGAGATTTA--------------GATTATTTT------------------------AATGAATTCTTCAATTAATGACAAGCAAG---TAT---ATGTATATGCAGAATA--TGCTCTCTCTAGGACCATA------------TTCCAAGAGCAATCCAACGTGCTTAGTAATAAATAC-CTTTTTATGCTGTATTTTGGAGATGAGCATGTTTTACTCTAGGGCAAGCAAGGAGCT----CTA-TGGAAGGCAACCAGGCAAGCCAGTTAAA-----------------------------------------
i calJac3.chr9              I 308 C 0
s mm10.chr10                126892544 243 + 130694993 CAGTCTACATTATAAACTACATGCCTGAGATTTGCTAATTCCTCAATCACTCATAAT------------------------AATGTGCTCCTCAAATAATGAAATTCAAGAACTAA---ATACATATG------------TCCCGCCAGGAGTATA-------CGGACTTCTGAGAGCAACCCAAAATCATTAATGATAAATACGTTTTTTATATTGTGCTGCTGAGGCTAA-ATGTTTTACTCTGGGGCAAACAATGACTT----TCAGTATGAAGCAA----GCAACCTAGTTAAG-----------------------------------------
i mm10.chr10                C 0 C 0
s canFam3.chr10              67341606 302 -  69331447 TAACCCAAGTTATAAAGTATAAGCtt-aaattta--------------tattagtttttttttttttttaCTTCTCAGCACACTGCACTCTTCAACTAATGAAATGCAAG---TATTAAATACATATG------------TCTCTCTAAGAGCATAAATATACTGCACTTCTGAGAGCAATCCAAAGTGCTTAACAATAAAAAA-CTTTTTA---TATGTTTTTGAGACTAA-ATGTTTTACTCTAGAGCAAGCAAGGAGCTTTGCCTA-CAGAAGGcagaca-gcaggctggttaagaaccctggttgtgggacacctgggtggctcagtcagttaaa
i canFam3.chr10             I 1 I 177

a score=513176.000000
s hg38.chr12_GL383550v2_alt    149509 139 +    169178 AACACTAgttgtaatcctgcctctacc----acttactaactttggaatctaaacaactgtctcactttccacatatgtaaaacagggacaataatagtataatatctatctcagtaggttattgtgaagattaaataagaat
s panTro4.chr12              31387572 139 + 134246214 AACACTAgttgtaatcctgcctctgcc----acttactaactttggaatctaaacaactgtctcactttccacatacgtaaaacagggacaataatagtataatatctatctcagtaggttattgtgaagattaaataagaat
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78590634 139 - 136387465 aacactggttgtaatcctgcctctgcc----acttactaactttggaatctaaacaactgtctcactttccacatacgtaaaacagggacaataatagtataatatctatctcagtaggttattgtgaagattaaataagaat
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54792490 143 + 123690457 AACACTggttgtaatcctgcctctgccacttacttactaactttggaatctaaacaactgtctcactttccacatacgtaaaacagggactataatagtataatatctatctcagtgggttattgtgaagattaaataagaat
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79699148 136 - 134985053 AATACTggttgtaatcctgcctctgcc----acttactaactttggaatctaaacaactgtctcactttccacatacataaaacagggacaataatagt---atatctacctcagtgggttattgtgaagattaaataagaat
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80799029 136 - 137757926 AATACTggttgtaatcctgcctctgcc----acttactaactttggaatctaaacaactgtctcactttccacatacataaaacagggacaataatagt---atatctacctcagtgggttattgtgaagattaaataagaat
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78751537 136 - 132286798 AATACTGGTTgtaatcctgcctctgcc----acttactaacttTGGAATCTAAACAACTGTCTCACTTTCCACATACATAAAACAGGGACAATAATAGT---ATATCTACCTCAgtgggttattgtgaagattaaataagaat
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74675405 139 - 128539186 AATACTggttgtaatcctgcctctgcc----acttactaactttggaatctgaacaactgtctcactttccacatacataaaacagggacaataatagtataatatctacctcagtgggttattgtgaagattaaataagaat
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77483696 139 - 124281992 AACACTggttgtaatcctgcctctgct----acttatgaactttggaatctaaacaactgtctcactttccacatacataaaacagggacaataatagtataatacctatctaagtgcgttattgtgaagattaaataagaac
i calJac3.chr9              C 0 C 0
s mm10.chr10                126892787 125 + 130694993 AAGCCGGGCC---AGcccagctctgcc--------agtaactgtagaatccaaactagtgtttcactttgcacatacggaagacaagaataacaa-------ctatcgtcctcaatggactgttgtagagagtgaaggagaat
i mm10.chr10                C 0 I 1235
s canFam3.chr10              67342085 129 -  69331447 aaccctggttgtaatcctgcctctgcc----acttattaaccatgg-acctcaataaatgtctccctttcaacatgtagaacatgag----atcatagc-----atctacctggatggactgttgagaagactcagtaagaat
i canFam3.chr10             I 177 C 0

a score=178336.000000
s hg38.chr12_GL383550v2_alt    149648 78 +    169178 ctgtgcaaacagaacagtgtttggaacacagccctcagtaaattttaat---tatttttTTATTTTTATTTTTATTATTAA--------------
s panTro4.chr12              31387711 78 + 134246214 ctgtgcaaacagaacagtgtttggaacacagccctcagtaaattttaat---tatttttttatttttatttttattattaa--------------
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78590773 60 - 136387465 ctgtgcaaacagaacagtgtttggaacacagccctcagtaaattttaat---tattattTTTT--------------------------------
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54792633 61 + 123690457 ctgtgcaaacagaacagtgtttggaacataaccctcagtaaatgttaat---tattattTTTTT-------------------------------
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79699284 60 - 134985053 ctgtgcaaacagaacagtgtttggaatatagccctcagtaaatgttaat---tattattTTTT--------------------------------
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80799165 60 - 137757926 ctgtgcaaacagaacagtgtttggaatatagccctcagtaaatgttaat---tattattTTTT--------------------------------
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78751673 60 - 132286798 cTGTGCAAACAGAACAGTGTTTGGAATATAgccctcagtaaatgttaat---tattatttttt--------------------------------
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74675544 60 - 128539186 ctgtgcaaacagaacagtgtttggaatatagccctcagtaaatgttagt---tattattTTTT--------------------------------
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77483835 60 - 124281992 ctatgcaaacagaacactatttggagcacagccctcagtaaatgttaat---tattattTTTT--------------------------------
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67342214 75 -  69331447 --ccacaaaaggaacagtgtttggcatacagtCCCCAGCCAGTGTTAACCAGCATTAGTTTTT------------------ACATTTATAGTTTA
i canFam3.chr10             C 0 I 223
e mm10.chr10                126892912 1235 + 130694993 I

a score=552877.000000
s hg38.chr12_GL383550v2_alt    149726 209 +    169178 TGTCTCCTATGGAATACATTATAAAATATATTCCATAGGAAAAAATTAATAGCTTATTAAAGTCAGTCATCACTATTACTAGGACTTACAGGATATAGTTAAGAGAATTCTAAAAATACACTTTAAATTTCTCTAACTGTATATCAAAAATGGTATTCAATGTTAGTTATAAACCGAAATTCAAGACTAAGGTAGAACTATGACAGTAA
s panTro4.chr12              31387789 208 + 134246214 tGTCTCCTATGGAATACATTATAAAATATATTCCATAGGAAAAAATTAATAGCTTATTAAAGTCAGTCATCACTATTACTAGGACTTACAGGATATAGTTAAGAGAATTCTAAAAATACACTTTAAATTTCTCTAACTGTATATCAAAAATGGTATTCAATGTTAGTTAAAAACCGAAATCCAA-ACTAAGGTAGAACTATGACAGTAA
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78590833 195 - 136387465 --------------CACATTATAAAATGTATTCCATAGGAAAAAATTAATAGCTTATTAAAGTCAGTCATCACTATTACTAGGACTTACAGGATATAGTTAAGAGAATTCTAAAAATACACTTTAAATTTATCTAGCTGTATATCAAAAATGGTATTCAATGTTAGTTAAAAACAGAAATTCAAGACTAAGGTAGAACTATGACAGTAG
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54792694 195 + 123690457 --------------CACATTATAAAACGTATTCCATAGGAAAAAATTAATAGCTTATTAAAGTCAGTCATCACTATTATTAGGACTTACAGGATATAGTTAAGAGAATTCTAAAAATACACTTTAAATTTCTCTAGCTGTATATCAAAAATGGTATTCAATGTTAGTTAAAAACAGAAATTCAAGACTAAGGTAGAACTATGACAGTAG
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79699344 195 - 134985053 --------------CACATTATAAAATGTATCCCACAGGAAAAAACTAATAGCTTATTAAAGTCAGTCATCACTATTATTAGGACTTACAGGATATAGTTAACAGACTTCTAAAAATATAGTTTAAATTTCTCTAGCTGTATATCAAAAATGGTATTCAATGTTAGTTAAAAACAGAAATTCAAGACTAAGGTAGAGCTATGACAGTAG
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80799225 195 - 137757926 --------------CACATTATAAAATGTATCCCACAGGAAAAAACTAATAGCTTATTAAAGTCAGTCATCACTATTATTAGGACTTACAGGATATAGTTAACAGACTTCTAAAAATATAGTTTAAATTTCTCTAGCTGTATATCAAAAATGGTATTCAATGTTAGTTAAAAACAGAAATTCAAGACTAAGGTAGAGCTATGACAGTAG
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78751733 195 - 132286798 --------------cacattataAAATGTATCCCATAGGAAAAAACTAATAGCTTATTAAAGTCAGTCATCACTATTATTAGGACTTACAGGATATAGTTAACAGACttctaaaaatatactttaaatttctCTAGCTGTATATCAAAAATGGTATTCAATGTTagttaaaaacagaaattcaagACTAAGGTAGAGCTATGACAGTAG
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74675604 193 - 128539186 --------------CACATTATAAAATGTATCCCACAGGAAAAAATTAATAGCTTATTAAAGTCAGTCATCACTATTATTAGGACTTACAGGATGTAGTTAAGAGACTTCTAAAAATATAGTTTAAATTTCTCTAGCTGTATATCAAAAATGGCATTCAATGTTAGTTAAAAAC--AAATTCAAGACTAAGGTAGAGCTATGACAGTAG
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77483895 169 - 124281992 --------------CATATTATAAAACATATTCAATAGGAAAAAATTAATAGCTTATTAAAGTCAGTCATCACTATTATTAGGACTTAAATAATATAGTTAAGAGAATTCTAAAAATACACTTTAAATTCCTCTAGCTGTTT------------ATTCAATGATAATTAAAAACAGAAATTCAAGACTAAGGTAG--------------
i calJac3.chr9              C 0 C 0
e mm10.chr10                126892912 1235 + 130694993 I
e canFam3.chr10              67342289 223 -  69331447 I

a score=1864244.000000
s hg38.chr12_GL383550v2_alt    149935 507 +    169178  
s panTro4.chr12              31387997 508 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78591028 508 - 136387465  
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54792889 508 + 123690457  
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79699539 506 - 134985053  
i rheMac3.chr11             C 0 I 1
s macFas5.chr11              80799420 506 - 137757926  
i macFas5.chr11             C 0 I 1
s papAnu2.chr11              78751928 506 - 132286798  
i papAnu2.chr11             C 0 I 1537
s chlSab2.chr11              74675797 506 - 128539186  
i chlSab2.chr11             C 0 I 1
s calJac3.chr9               77484064 521 - 124281992  
i calJac3.chr9              C 0 C 0
s mm10.chr10                126894147 425 + 130694993  
i mm10.chr10                I 1235 C 0
s canFam3.chr10              67342512 455 -  69331447  
i canFam3.chr10             I 223 C 0

a score=71068.000000
s hg38.chr12_GL383550v2_alt    150442 59 +    169178 CTGATCGTACTAGTCTGTCTC-GGACTCCacagcattatggttaagagagtgggctttgg
s panTro4.chr12              31388505 59 + 134246214 CTGATCGTACTAGTCTGTCTC-GGACTCCacagcattatggttaagagagtgggctttgg
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78591536 59 - 136387465 TTGATCATACTAGTCTGTCTC-GGACTCCacagcattatggctaagagagtgggctttgg
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54793397 59 + 123690457 CTGATCGTACTAGTCTGTCTC-GGACTCCacagcattatgcttaagagagtgggctttgg
i nomLeu3.chr11             C 0 C 0
s calJac3.chr9               77484585 59 - 124281992 CTGATGACACTAGTCTATCTC-AGACTCCacagcattacagttaagagattgggctttgg
i calJac3.chr9              C 0 C 0
s mm10.chr10                126894572 60 + 130694993 CTGACCACACCAGTTTACCTCGGGATGCCGCAGCACTGTGGTTTTAAGAAtgggctttgg
i mm10.chr10                C 0 I 564
s canFam3.chr10              67342967 40 -  69331447 CTGCT-----------------GGACTCCacagcatcatatt---aggagtgggctttgg
i canFam3.chr10             C 0 C 0
e chlSab2.chr11              74676303  1 - 128539186 I
e papAnu2.chr11              78752434 1537 - 132286798 I
e macFas5.chr11              80799926  1 - 137757926 I
e rheMac3.chr11              79700045  1 - 134985053 I

a score=48088.000000
s hg38.chr12_GL383550v2_alt    150501 43 +    169178 aatgaagcacacagattcaaattccagctccaccccttactaa
s panTro4.chr12              31388564 43 + 134246214 aatgaagcacacagattcaaattccagatccaccccttactaa
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78591595 43 - 136387465 aatgaagcacacagattcaaattccagctccaccccttactaa
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54793456 43 + 123690457 aatgaagcatacagattcaaattccagctccagcccttactaa
i nomLeu3.chr11             C 0 C 0
s calJac3.chr9               77484644 43 - 124281992 aatgaagccgacaaattcaaattccagctccagcccttactaa
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67343007 39 -  69331447 aatgaag----cagatgcaaactccagccccactccttactaa
i canFam3.chr10             C 0 C 0
e mm10.chr10                126894632 564 + 130694993 I
e chlSab2.chr11              74676303  1 - 128539186 I
e papAnu2.chr11              78752434 1537 - 132286798 I
e macFas5.chr11              80799926  1 - 137757926 I
e rheMac3.chr11              79700045  1 - 134985053 I

a score=641330.000000
s hg38.chr12_GL383550v2_alt    150544 512 +    169178  
s panTro4.chr12              31388607 512 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78591638 511 - 136387465  
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54793499 517 + 123690457  
i nomLeu3.chr11             C 0 C 0
s calJac3.chr9               77484687 561 - 124281992  
i calJac3.chr9              C 0 C 0
s mm10.chr10                126895196 455 + 130694993  
i mm10.chr10                I 564 I 3130
s canFam3.chr10              67343046 554 -  69331447  
i canFam3.chr10             C 0 C 0
e chlSab2.chr11              74676303   1 - 128539186 I
e papAnu2.chr11              78752434 1537 - 132286798 I
e macFas5.chr11              80799926   1 - 137757926 I
e rheMac3.chr11              79700045   1 - 134985053 I

a score=34975.000000
s hg38.chr12_GL383550v2_alt    151056 32 +    169178 aacccaggttgtcatgagcatatacaatgagg
s panTro4.chr12              31389119 32 + 134246214 aacccaggttgtcatgagcatatacaatgagg
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78592149 32 - 136387465 AATCCAGATTATCATGAGCATATACAATGAgg
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54794016 32 + 123690457 aacccaggttgtcatgagcatatacaatgagg
i nomLeu3.chr11             C 0 C 0
s calJac3.chr9               77485248 32 - 124281992 AGCCCAGGTTGTCATAAGCATATATAATGTAA
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67343600 32 -  69331447 AACCCAGGATGTCATCAGTGCATACAATgaga
i canFam3.chr10             C 0 I 26
e mm10.chr10                126895651 3130 + 130694993 I
e chlSab2.chr11              74676303  1 - 128539186 I
e papAnu2.chr11              78752434 1537 - 132286798 I
e macFas5.chr11              80799926  1 - 137757926 I
e rheMac3.chr11              79700045  1 - 134985053 I

a score=210016.000000
s hg38.chr12_GL383550v2_alt    151088 265 +    169178 ttgggtgcagtggctcatgcctataatcccagtactttgagaggctgaggcaggcagattccttgagcccaggagttcgggaccagcctgggcaacagagcaaaaccccatctctataaaaaaat-------aaaataaaaattagccaggcatggtggcacatgcctatagtcccagctacttggaaggctgaggtaggaggatcacttgagcccaggaggttggtgctgcagtgagccaggaacacgccactg--aactccagcctgggcaa
s panTro4.chr12              31389151 265 + 134246214 ttgggtgcagtggctcatgcctgtaatcccagtactttgagaggctgaggcaggcagattgcttgagcccaggagttcgggaccagcctgggcaacagaggaaaaccccatctctataaaaaaat-------aaaataaaaattagccaggcatggtggcacatgcctatagtcccagctacttggaaggctgaggtaggaggatcacttgagcccaggaggttggtgctgcagtgagccaggaacacgccactg--aactccagcctgggcaa
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78592181 266 - 136387465 ttgggtgcagtggctcatgcctgtaatcccagtactttgagaggctgaggcaggcagattgcttgagcccaggagttcgggatcagcctgggcaacagagcaaaaccccatctctataaaaaaat------aaaaataaaaattagccaggcatggtggcacatgcctatagtcccagctacttgggaggctgaggtaggaggatcacttgagcccaggaggttggtgctgcagtgagccaggaacatgccactg--aactccagcctgggcaa
i ponAbe2.chr12             C 0 I 2614
s nomLeu3.chr11              54794048 266 + 123690457 ttgggtgcagtggctcatgcctgtaatcccagtactttcagaggctgaggcaggcagattgcttgagcctaggagtttgggaccagcctgggcaatagagcaaaaccgcatctctacaaaaaaat------aaaaataaaaatcagccaggcatggtggcacatgcctatagtcccagctacttgcgaggctgaggtaggaggatcacttgagcccagaaggttggtgttgcagtgagccaggaacacgccactg--aactccagcctgggcaa
i nomLeu3.chr11             C 0 C 0
s calJac3.chr9               77485280 258 - 124281992 TAGG----------------ctgtaatcgcaacactttgagaggctgaggcaggcagactgatggagcccaggagttcaagaccagcctgggcaatatagcaaaatcccatctctatcaaaaactaaaattaaaaataaaaattagccagatgtggtgtcacatgcctatagtcccagctactggggagaccgaggtaggagaatcacttgagcccaggaggttggcactgcagtgagccaggaacatgacactgcacactctggcctgggcaa
i calJac3.chr9              C 0 C 0
e mm10.chr10                126895651 3130 + 130694993 I
e canFam3.chr10              67343632  26 -  69331447 I
e chlSab2.chr11              74676303   1 - 128539186 I
e papAnu2.chr11              78752434 1537 - 132286798 I
e macFas5.chr11              80799926   1 - 137757926 I
e rheMac3.chr11              79700045   1 - 134985053 I

a score=28843.000000
s hg38.chr12_GL383550v2_alt    151353 70 +    169178 gaaagggagaccctgtgtcaaaaaaaaa-------------aaaaagaaaaagaaagaatgcctgacctactctggaggtggg
s panTro4.chr12              31389416 73 + 134246214 gaaagggagaccctgtgtcaaaaaaaaa----------aagaaaaagaaaaagaaagaatgcctgacctactctggaggtggg
i panTro4.chr12             C 0 C 0
s nomLeu3.chr11              54794314 83 + 123690457 gaaagggagaccctgtctcaaaaaaaaaaaagaaaagaaaagaaaagaaaaagaaagaatacctgacctagtctggaagtggg
i nomLeu3.chr11             C 0 C 0
s calJac3.chr9               77485538 68 - 124281992 caaagggagaccctgtctcaaaaaaaaa---------------agaaagaaagaaagaaTCcctgacctggtctggaggtaaa
i calJac3.chr9              C 0 C 0
e mm10.chr10                126895651 3130 + 130694993 I
e canFam3.chr10              67343632 26 -  69331447 I
e chlSab2.chr11              74676303  1 - 128539186 I
e papAnu2.chr11              78752434 1537 - 132286798 I
e macFas5.chr11              80799926  1 - 137757926 I
e rheMac3.chr11              79700045  1 - 134985053 I
e ponAbe2.chr12              78592447 2614 - 136387465 I

a score=289461.000000
s hg38.chr12_GL383550v2_alt    151423 459 +    169178 ggaaggtttctctgtggaaggaatggttaaactggtatctaatggaggaatagaagtgaaatttgaggtgtggaggggaagggagtattctaggcagagagaaaaacctatgcaaagcgtagagggagggttgacggaagaaaatgcttgagaagctaaaaggagagccctagagttgaagcacagcggtgg-gggtggtaggcaacagatacggctggtgaggtcgg--ggggccaaatccctgaagaccttgtctttaccctaagagcaatgggaagctctcaggataaagggaatgttgaaacagaagactgcttttgttttattttgcttttatccttttaactatagttggaagaataggcaggagatggccaaaactggatgc--agagaaattagctgaaggcta-----atattctaggcaagagagaacagcacttcagctagaatggtggtggaagcca-
s panTro4.chr12              31389489 456 + 134246214 ggaaggtttctctgtggaaggaatggttaaactggtatctaatggaggaatagaagtgaaatttgaggtgcggaggggaagggagtattctagccagagagaaaaacctatgcaaagcgtagagggagggttgacggaagaaaatgcttgagaagctgaaaggagagccctagagttgaagcacagcggtgg-gggtggtaggcaacagatacggctggtgaggtcgg--ggggccaaatccctgaagaccttgtctttaccctaagagcaatgggaagctctcaggagaaagggaatgttgaaacagaagactgcttttgttttattttgcttttatccttttaactatggttggaagaataggcaggagatggccaaaactggatgc--agagaagttagctgaaggcta-----atattctaggcaagagagaacagcacttcagctagaa---tggtggaagccg-
i panTro4.chr12             C 0 C 0
s nomLeu3.chr11              54794397 455 + 123690457 gaaaggtttctctgtggaaggaatggttaaactggtatctaatggatgaatgaaagtgaaattttaggtgcgtcggggaagggagtattctaggcagagagaaaaacctatgcaaagcatagagggagggttgacggaataaaatgcttgagaagctaaaaggagagccctagagttgaagcacagcagt-g-gggtggtaggcaacagatacggctggtgaggtcgg--ggggccaaatccctgaagaccttgcctttaccctaagagcaatgggaagatctcaggataaagggaatgttgaaacagaaaactgcttttgttttattttgcttttatccttttaattatagttggaagaataggcaggagatggccaaaactggatgc--agagaaattagctgaaggcta-----atattctaggcaagagagaacagcacttcagctagaa---tggtggaagctg-
i nomLeu3.chr11             C 0 C 0
s calJac3.chr9               77485606 456 - 124281992 gaaaggcttctctgtggaaggaatagttgaactggtatctaatgaatgaacagaaatgaaatttgaggtgcagagaagaagggagtattctaggtggaaagaaaaacctatgcaaagggtagagggagggttgaaggaagaaaattcttgagaagctaaaaggagagccctagagttgaagcacagcagtggcggggggtaggcaacagatacagctggtgaggtcgg--ggggccaactccctgaagacctcgtctttaccctaagagcactgggaagttctcaggataaaggaaatgctgaaacagaagactgcttttgttttattttgcttttatccttttaactatagttggaagaacaggcaggagatggccaaaactggatgc--agagaaattagctgaaggcta-----atattctaggcaat-gagaacagtacttcagctagac---tggtggaagctg-
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67343658 432 -  69331447 aaaaggcatctctgcagaaggaatgtttaaaatgggatctcatcgatgagaacgagttaaatttgaga---ggtggggaaggtagcatttcagaccaag----caacctgtgcaaaggcaaggggca----tgaaggaatagaatgtctgagacgctgaaaacaggcctgcactgctgtagcacagaactgt-aagtgacaggcatgaaataaggctggtgaggttggctagagcccaatca-------------ccttatcctgagaatagtgggtag-tcactg---aaagggaagagtggaacaggggaatccttttg------tttgtttttacccttttgactatagttggaaaaataagcagaagatgaccaaaactggatgtagagagagactagctcaagactaaggagatgttctaggcaagagataatggtatctgagcaggga---tagtaggatacct
i canFam3.chr10             I 26 C 0
e mm10.chr10                126895651 3130 + 130694993 I
e chlSab2.chr11              74676303   1 - 128539186 I
e papAnu2.chr11              78752434 1537 - 132286798 I
e macFas5.chr11              80799926   1 - 137757926 I
e rheMac3.chr11              79700045   1 - 134985053 I
e ponAbe2.chr12              78592447 2614 - 136387465 I

a score=199031.000000
s hg38.chr12_GL383550v2_alt    151882 180 +    169178 aaagagttatttaggaggtaaattaga-caaaatatgttg------atagaatacggggaaggaatcaggggtatcaaagatgatccataaatttctggcttggctaatagggtcgatggtagcaccatccactgagatatgcaaaactaaaagactgggttgagtggggagatgggggatggtaaa
s panTro4.chr12              31389945 178 + 134246214 aaagagttatttaggaggtaaattaga-caaaatatgttg------atagaatatggggaaggaatcaggggtaccaaagatgatccataaatttctggcttggctaataggatcgatggtagcaccatccactgagatatgcaaaactaaaagactgggttgggtggg--gatgggggatggtaaa
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78595061 179 - 136387465 aaagagttatttaggaggtaaattaggccaaaatatgttg------atagaatatggggaaggaatcaggggtatcaaagatgatccataaatttctggcttggctaataggatcaatggtagcaccatccactgagatatgcaaaactaaaagactgggttgggtggg--gatgggggatggtaac
i ponAbe2.chr12             I 2614 C 0
s nomLeu3.chr11              54794852 178 + 123690457 aaagagtcatttaggaggtaaattaga-taaaatttggtg------atagaatatggggaaggaatcaggggtatcaaagatgatccataaatttctggcttggctaataggatcgatggtagcaccatccactgagatatgcaaaactaaaagactgggttgggtggg--gatgggggatggtaaa
i nomLeu3.chr11             C 0 C 0
s calJac3.chr9               77486062 178 - 124281992 aaagagatacttaggaggtaaatcaga-taaaatatagtg------atagaatatggggaaggaatcagggatatcaacgatgatccataaatttctggcttggctaataggattgacggtagcaccatccactgagatatgcaaaactagaagactgggttgggtggg--gataggggatggtaaa
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67344090 183 -  69331447 caaaaaatatttaggtagtaagttgga-taaaagttggtgatggatatggaatatgggaagggaatcagaggtg-caaggatgatctctacatttctgctttgggtaataggatagatagtggtaccattcactgagatatgcaaaactacaacaccaggttgggtggg--gacaagggatgatata
i canFam3.chr10             C 0 C 0
e mm10.chr10                126895651 3130 + 130694993 I
e chlSab2.chr11              74676303   1 - 128539186 I
e papAnu2.chr11              78752434 1537 - 132286798 I
e macFas5.chr11              80799926   1 - 137757926 I
e rheMac3.chr11              79700045   1 - 134985053 I

a score=285502.000000
s hg38.chr12_GL383550v2_alt    152062 127 +    169178 aatcatgaatttggactt-acaca----tttcaagtctgaagtgtccttaagacccttaagtaggtggggagcagtggctctcacttgtaatcccagcactttgggaggctgaaatggaaggatcatttgag
s panTro4.chr12              31390123 127 + 134246214 aatcatgaatttggactt-acaca----tttcaagtctgaagtgtccttaagacacttaagtaggtggggagcagtggctctcacttgtaatcccagcactttgggaggctgaggtggaaggatcatttgag
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78595240 127 - 136387465 aatcacgaatttggactt-acaca----tttcaagtctgaagtgtctttaagacacttaagtaggcggggagcagtggctctcacttgtaatcccagcactttgggaggctgaggtggaaggatcatttgag
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54795030 128 + 123690457 aatcacgaatttggacttaacaca----tttcaagtctaaagtgtctttaagacacctaagtaggcggggagcagtggctctcgtttataatcccaacactttgggaggctgaggtggaagaatcacttgag
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79700046 127 - 134985053 AATCATGAATTTGGACTC-ACACA----TTTCAAGTCTAAAGTGTCTTCAAGACACTTAAGTAggcggggaaccgtggctctcacttgtaatcccagcactttgggaggctaaggcagaaggatcatttgag
i rheMac3.chr11             I 1 C 0
s macFas5.chr11              80799927 127 - 137757926 aatcatgaatttggactc-acaca----tttcaagtctaaagtgtcttcaagacacttaagtaggcggggaaccgtggctctcgcttgtaatcccagcactttgggaggctaaggcagaaggatcatttgag
i macFas5.chr11             I 1 C 0
s chlSab2.chr11              74676304 127 - 128539186 aatcatgaatttggactt-acaca----tttcaagtctaaagtgtcttcaagacacttaagtaggcggggaaccatggctctcacttgtaatcccagcattttgggaggctgaggtggaaggatcatttgag
i chlSab2.chr11             I 1 C 0
s calJac3.chr9               77486240 116 - 124281992 aatcatgaatttggactt-agaca----tttcaaatctaaagtgtctttaagacgcttaag-----------cagtggctctcacttgtaatcctagcactttgggaggctgaggtagaaggatcgtttgag
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67344273  86 -  69331447 aaccatcagtttgaactt-ggacaaatttgtgaggcctcaggggcctc----acaattaggta-------------------------------------ttaggtaggt----attaagtgagcatttgaa
i canFam3.chr10             C 0 I 28
e mm10.chr10                126895651 3130 + 130694993 I
e papAnu2.chr11              78752434 1537 - 132286798 I

a score=434046.000000
s hg38.chr12_GL383550v2_alt    152189 180 +    169178 gccaggagtttaagaccagcctgggcaacatagtgagacctcatctctacaaaaaattttaaaagttagctgggtccagtgatgcactcctgtagtcccaactactcaggaggctgagatgggaggattgcttgagcccaggagttcaaggctgtagtgagccatgattgcgccactgca
s panTro4.chr12              31390250 180 + 134246214 gccaggagtttaagaccagcctgggcaacatagtgagacctcatctctacaaaaaattttaaaagttagccgggtccagtgatgcactcctgtagtcccaactactcagcaggctgagatgggaggatcgcttgagcccaggagttcaaggctgtagtgagccatgattgcgccactgta
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78595367 180 - 136387465 gccaggagtttaagaccagcctgggcaacatagtgagacctcatctctacaaaaaattttaaaagttagccgggtccagtgatgcactcctgtagtcccaactactcaggaggctgagatgggaggatcgcttgagcctaggaattcaaggctgtagtgagccaagattgtgccactgca
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54795158 179 + 123690457 gccaggagtttaagagcagcctgggcaacatagtgagacctcatctctacaaaaaattttaaaagttagccgggtccagtgatgcactcctgtagtcccaactactcaggaggctgagatggg-ggatcacttgagcccaagagttcaaggctgtagtgagccatgattgcgccactgca
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79700173 180 - 134985053 gccaggagtttaagaccagcctgggcaacataatgaggcctcatctctacaaaaaattttaaaagttagctggatccagtgatgcatacctgtagtcccaactactcaggaggctgagatgggaggatcgcttgagcccaggagttcaaggctgtagtaagccatgactgcgccactgca
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80800054 180 - 137757926 gccaggagtttaagaccagcctgggcaacataatgaggcctcatctctacaaaaaattttaaaagttagctggatccagtgatgcatacctgtagtcccaactactcaggaggctgagatgggaggatcgcttgagcccaggagttcaaggctgtagtaagccatgattgcgccactgca
i macFas5.chr11             C 0 C 0
s chlSab2.chr11              74676431 180 - 128539186 gccaggagtttaagaccagcctgggcaacataatgaggcctcatctctacaaaaaactttaaaagttagctggatccagtgatgcacacctgtagtcccaactactcaggaggctgagatgggaggatcgcttgagcccaggagttcaaggctgtagtaagccatgattgcaccactgca
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77486356 180 - 124281992 gccaggagttcaagaccagcctgggcaacacagtgagacctcatctctacaaaaaatttaaaaagttagccacatgcagtgattcacgtccgcagtcccaactactcagaaggctgagatgggaggatcacttgagcccaagagttcaaggctgcagtgagccatgattgcaccactgca
i calJac3.chr9              C 0 C 0
e mm10.chr10                126895651 3130 + 130694993 I
e canFam3.chr10              67344359  28 -  69331447 I
e papAnu2.chr11              78752434 1537 - 132286798 I

a score=2360516.000000
s hg38.chr12_GL383550v2_alt    152369 921 +    169178  
s panTro4.chr12              31390430 928 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78595547 922 - 136387465  
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54795337 909 + 123690457  
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79700353 929 - 134985053  
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80800234 932 - 137757926  
i macFas5.chr11             C 0 C 0
s chlSab2.chr11              74676611 924 - 128539186  
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77486536 930 - 124281992  
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67344387 775 -  69331447  
i canFam3.chr10             I 28 C 0
e mm10.chr10                126895651 3130 + 130694993 I
e papAnu2.chr11              78752434 1537 - 132286798 I

a score=413487.000000
s hg38.chr12_GL383550v2_alt    153290 154 +    169178 gaatgagatact-tcataataaaaaTTTTCATTtaaaa-aaataggccaggcacagtggctcacgcctgtaatcctagcagtttgggaggccaagatgggtggatcacctgaggtcaggggttcaagaccagcct--ggccaatatggtgaaaccctg
s panTro4.chr12              31391358 154 + 134246214 gaatgagatact-tcataataaaaaTTTTCATTTAAAA-AAATAggccaggcacagtggctcacgcctgtaatcctagcagtttgggaggccaagatgggtggatcacctgaggtcaggggttcgagaccagcct--ggccaatatggtgaaaccctg
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78596469 154 - 136387465 gaatgagatact-tcataaCaaaaattttcatttaaaa-aaataggccaggcacgatggctcatgcctgtaatcctagcagtttgggaggccaagatgggtggatcacctgaggtcaggggttcgagaccagcct--ggccaatatggcgaaaccctg
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54796246 154 + 123690457 gaatgagatact-tcataataaaaaTTTCCATTtaaaa-aaataggccaggcatggtggctcacatctgtaatcctagcagtttgggaggccaaggtgggtggatcacctgaggtcaggggttcaagaccagcct--ggccaatatggagaaaccctg
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79701282 154 - 134985053 gaatgagatact-tcataataaaaaTTTTCACTTAAAA-AAAAAggccaggcatggtggctcacacctataatcctagcagtttgggaggccaaggtgggggaatcacctgaggttaggggttcaagaccaggct--ggccaatatggcgaaaccctg
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80801166 154 - 137757926 gaatgagatact-tcataataaaaaTTTTCACTTAAAA-AAAAAggccaggcatggtggctcacacctataatcctagcagtttgggaggccaaggtgggggaatcacctgaggttaggggttcaagaccaggct--ggccaatatggcgaaaccctg
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78753971 154 - 132286798 gagtgagactctgtctcaaaaataataataattaaaaataatagggccgggcgcggtggctcaagcctgtaatcccagcactttgggaggccgagacgggcggatca--tgaggtcaggagatcgagactatcct--ggctaacacggtgaaacccca
i papAnu2.chr11             I 1537 C 0
s chlSab2.chr11              74677535 153 - 128539186 gaatgagatact-tcataataa-aaTTTTCACTTAAAA-AAATAggccaggcatggtggctcacacctataatcctagcagtttgggaggccaaggtggggggatcacctgacgttaggggttcaagaccagcct--ggccaatatggtaaaaccctg
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77487466 152 - 124281992 gagtgagatact-tcacaatgaaaaTCTTCATTTAAA--AAATAggcgaggtgcagtggctcacacctgtaatcctaacagtttgggaggctgaggcgggtggatcacctgaggtcagcagtttgagaccagcct--ggccaacatggc-aaacccta
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67345162 109 -  69331447 gaatgagacacc-tcataatacaaata-taaCTTAAGA-AAATAAA------------------------------AAGAGATgggcagccctgggtgg--------------ctcagcggtttagcacctgccttcagcc--cagggcgggatcctg
i canFam3.chr10             C 0 I 96
e mm10.chr10                126895651 3130 + 130694993 I

a score=134138.000000
s hg38.chr12_GL383550v2_alt    153444 51 +    169178 actctact-aaaaatac-aaaaattagctgggcatggtggcacatgcctgcaa
s panTro4.chr12              31391512 51 + 134246214 actctact-aaaaatac-aaaaattagctgggcatggtggcacatgcctgcaa
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78596623 51 - 136387465 tctctcct-aaaaatac-aaaaattagctgggcatcgtggcacatgcctgcaa
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54796400 51 + 123690457 tctctact-acaaatac-aaaaattagctaggcatggtggcacatgcctgcaa
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79701436 51 - 134985053 tctctacc-aaaaataa-aaaaattagctgggcgtggtggcacatgcctgcaa
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80801320 51 - 137757926 tctctacc-aaaaatac-aaaaattagctgggcgtggtggcacatgcctgcaa
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78754125 53 - 132286798 tctctactaaaaaatacaaaaaactagccgggcgaagtggcgggcgcctgtgg
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74677688 51 - 128539186 tctctact-aaaaatac-aaaaattagctgggcgtggtggcacatgcctgcaa
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77487618 51 - 124281992 tctctact-aaaaatac-aaaaattggccgggcacggtggctcacgcctgtaa
i calJac3.chr9              C 0 I 592
e mm10.chr10                126895651 3130 + 130694993 I
e canFam3.chr10              67345271 96 -  69331447 I

a score=247013.000000
s hg38.chr12_GL383550v2_alt    153495 93 +    169178 tcccagctactcaggaggctgaggcaggagaatcacttgaacccaggaggcagaggttgcagtgagcccatattgcaccactgcattccagcc
s panTro4.chr12              31391563 93 + 134246214 tcccagctactcaggaggctgaggcaggagaatcacttgaacccaggaggcagaggttgcagtgagcccatattgcaccactacattccagcc
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78596674 93 - 136387465 tccgagctactcaggaggctgaggcaggagaatcacttgaactcaggaggcagaggttgcagtgagcccatattgcaccactgcattccagcc
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54796451 93 + 123690457 tcccagctattcaggaggctgaggcaggagaatcacttgaacccaggaggcagaggttgcagtgagcccatattgcaccactgcattccagcc
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79701487 87 - 134985053 tcccagctactcaggaggctgaggcaggagaatcacttgaacccaggaggcg------gcagtgagccatggtagggccactgcactccagcc
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80801371 93 - 137757926 tcccagctactcaggaggctgaggcaggagaatcacttgaacccaggaggcggaggttgcagtgagcccatattgcgtcactgcattccagcc
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78754178 93 - 132286798 tcccagcatctcgggaggctgaggcaggagaatggcgtaaacccgggaggcggagcttgcagtgagctgagatccggccactgcactccagcc
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74677739 93 - 128539186 tcccagctactcaggaggctgaggcaggagaatcacttgaacccaggaggcagaggttgcagtgagcccatattgcgccgctgcattccagcc
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77488261 92 - 124281992 tcccagctacttggtaggttgaggcaggggaatcgctcgaact-gggaggtagacgttgcagtgagccaagatcacgccactgaacgccagcc
i calJac3.chr9              I 592 C 0
e mm10.chr10                126895651 3130 + 130694993 I
e canFam3.chr10              67345271 96 -  69331447 I

a score=3744645.000000
s hg38.chr12_GL383550v2_alt    153588 1142 +    169178  
s panTro4.chr12              31391656 1142 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78596767 1142 - 136387465  
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54796544 1139 + 123690457  
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79701574 1140 - 134985053  
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80801464 1141 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78754271 1145 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74677832 1132 - 128539186  
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77488353 1125 - 124281992  
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67345367 1122 -  69331447  
i canFam3.chr10             I 96 C 0
e mm10.chr10                126895651 3130 + 130694993 I

a score=1458482.000000
s hg38.chr12_GL383550v2_alt    154730 403 +    169178 AGTCCTACATAAAGTCTACCAAACAGAATGCCGAGCATGTGGAAGATGCTCAAAAAATATAAAGAGAGAGGATTAAAGGGAAGGAAACAATTTGGCAATAATGCCTACCTGAGATGTTGAAGCATCAAAACCTCCACTGACATTTCCATTACAGTCTTCGCAAGAAAAGTGTCTATCTTTGTTAACAGCACTAAAAGGCAAGAA------AAGGAGACAATGTCCAgaaacagtgtgtatgtggc-------aaacagccctgggccagggctcaggagaccctccaccatatagt--aaatcccctctactactaacacataggaaatcttgggaaagaaac--aacatcttcaggact--gttatctcacctgtaaaataa--ggaggttgtac--a--caaaatccattctagttcaaattctat
s panTro4.chr12              31392798 403 + 134246214 AGTCCTACATAAAGTCTACCAAACAGAATGCCGAGCATGTGGAAGATGCTCAAAAAATATAAAGAGAGAGGATTAAAGGGAAGGAAACAATTTGGCAATAATGCCTACCTGAGATGTTGAAGCATCAAAACCTCCACTGACATTTCCATTACAGTCTTCGCAAGAAAAGTGTCTATCTTTGTTAACAGCACTAAAAGGCAAGAA------AAGGAGACAATGTCCAGAAACAGTGTGTATGTGGC-------AAACAGCCCTGGGCCAGGGCTCAGGAGACCCTCCACCATATAGT--Aaatcccctctactactaacacataggaaaccttgggaaagaaac--aacatcttcaggact--gttatctcacctgtaaaataa--ggaggttgtac--g--caaaatccattctagttcaaattctat
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78597909 403 - 136387465 AGTCCTACATAAAGTCTACCAAACAGAATGCCGAGCATGTGGAAGATGCTCAAAAAAAATAAAGAGAGAGGATTAAAGGGAAGGAAACAATTTGGCAATAATGCCTACCTGAGATGTTGAAGCATCAAAACCTCCACTGACATTTCCATTACAGTCTTCGCAAGAAAAGTGTCTATCTTTGTTAACAGCACTAAAAGGCAGGAA------AAAGAGACAATGTCCAgaaacagtgtgtatgtggc-------aaacagccctgggccaggactcaggagaccctccaccatatagt--aaatcccctctactactaacacataggaaaccttgggaaagaaac--aacatcttcaggact--gttatctcacctgtaaaataa--ggaggttgtac--a--caaaatccattctagttcaaattctac
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54797683 408 + 123690457 AGTCTTACATAAAGTCTACCAAACAGAATGCCGAGCATGTGGAAGATGCCCAAAAAATATACAGAGAGAGGATTAAAAGGAAGGGAACAATTTGGCAATAATGCCTACCTGAGATGTTGAAGCATCAAAACCTCCACTGACATTTCCATTACAGTCTTCGCAAGAAAAGTGTCTATCTTTGTTAACAGCACTAAAAGGCAAGAATAGATTAAAGAGACAACGTTCAgaaacagtgtgtatgtggc--------aacagccctgggccaggactcaggagaccctccaccatatagt--aaatcccctctaccactaacacataggaaaccttgggaaagaaac--aacatcttcaggact--cttatctcacctgtaaaataa--ggaggttgtat--g--caaaatccattctagttcaaattctat
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79702714 413 - 134985053 AGTCCTACACAAAGTCTACCAAACAGAATGCCAAGCATGTGGAAGATGCTCAAAAAATATCAAGAGAGAGGATTAAAGGGAAGGAAACAATTTGGCAATAATGCCTACCTGAGATGTTGAAGCATCAAAACCTCCACTGACATTTCCATTACAGTCTTCGCAAGAAAAGTGTCTATCTTTGTTAACAGCACTAAAAGGCAAGAACAGATTAAAGAGACAATGTCCAgaaacagtgtgtatgtggc-------aaacagctctgggccaggactcaggagaccctccaccatacagt--aaatcccctctactactaacacataggaaaccttgggaaagaaacttaacatcttcaagactcagttatctcacctgtaaaataa--ggaGGTTGTAC--G--CAAAATGCATCCTAGTTCAAATTCTAT
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80802605 413 - 137757926 AGTCCTACACAAAGTCTACCAAACAGAATGCCAAGCATGTGGAAGATGCTCAAAAAATATCAAGAGAGAGGATTAAAGGGAAGGAAACAATTTGGCAATAATGCCTACCTGAGATGTTGAAGCATCAAAACCTCCACTGACATTTCCATTACAGTCTTCGCAAGAAAAGTGTCTATCTTTGTTAACAGCACTAAAAGGCAAGAACAGATTAAAGAGACAATGTCCAgaaacagtgagtatgtggc-------aaacagctctgggccaggactcaggagaccctccaccatacagt--aaatcccctctactactaacacataggaaaccttgggaaagaaacttaacatcttcaagactcagttatctcacctgtaaaataa--ggaggttgtac--G--CAAAATGCATCCTAGTTCAAATTCTAT
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78755416 413 - 132286798 AGTCCTACACAAAGTCTATCAAACAGAATGCCAAGCATGTGGAAGATGCTCAAAAAATATCAAGAGAGAGGATTAAAGGGAAGGAAACAATTTGGCAATAATGCCTACCTGAGATGTTGAAGCATCAAAACCTCCACTGACATTTCCATTACAGTCTTCGCAAGAAAAGTGTCTATCTTTGTTAACAGCACTAAAAGGCAAGAATAGATTAAAGAGACAATGTCCAGAAACAGTGTGTATATGGC-------AAACAGCTCTGGGCCAGGACTCAGGAGACCCTCCACCATACAGT--AAATACCCTCTACTACTAACACATAGGAAACCTTGGGAAAGAAACTTAACATCTTCAGGACTCAGTtatctcacctgtaaaataa--ggaGGTTGTAC--G--CAAAATGCATCCTAGTTCAAATTCTAT
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74678964 413 - 128539186 AGTCCTACACAAAGTCTACCAAACAGAATGCCAAGCATGTGGAAGATGCTCAAAAAATATCAAGAGAGAGGATTAAAGGGAAGGAAACAATTTGGCAACAATGCCTACCTGAGATGTTGAAGCATCAAAACCTCCACTGACATTTCCATTACAGTCTTCGCAAGAAAAGTGTCTATCTTTGTTAACAGCACTAAAAGGCAAGAATAGATTAAAGAGACAATGTCCAgaaacagtgtgtatgtggc-------aaacagctctgggccaggactcaggagaccctccaccatacagt--aaatcccctctactactaacacataggaaaccttgggaaagaaacttaacatcttcaggactcagttatctcacctgtaaaataa--ggaggttgtac--G--CAAAATGCATCCTAGTTCAAATTCTAT
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77489478 365 - 124281992 AGTCCTACACAAAATCTACCAAACAGAATGCTGAGCATGTGGACGATGCTCAAAAAATACCAGGAGAGAGGGTTAAAAGGAAGGAAACAATTTGGCAATAATGCCTACCTGAGACGTTGAAGCATCAAAACCTCCACTGACATTCCCATTACAGTCTTCGCAAGAAAAGTGTCTATCTTTGTTAACAGCACTAGAAGGCAAGAACAGATTAAAGAGACAATGTCAAGAAgcagtgtgtaggtggc-------aaacagtcctgggccaggactcaggagaccctccacc-----------------------actaacacatagagaaccttgggaaagaaacttaacaccttcaggactcagttatctcatctgtaaaataa--gaagattgtag--g-----------------------------
i calJac3.chr9              C 0 C 0
s mm10.chr10                126898781 346 + 130694993 AGTACTACACAAAGGCTGCCAGACAGGACTAGTGGCGTGTGAAAAGTGTCCGGCGTGTATCGGAAGGGAGA---AAGGGGGAGAGAGCAACTCAGCAAAGAAACACACCTGAGACGTAGACGCATCAAAGCCTCCGCTGACGTTTCCATCGCAGACTTCGCAGGAAAAGTGTCTTCCCCTGTTCACAGCACTGGAAAGCAC---------AGAGAGAT-------------------------GT-------GAGCAGCCC----CCA----CCAGGACACCCAAGACCGCACGGC--ACAGCCCTCTCACC--------------------------GACATTTAACACGGTCAAGGCTCAGCTGTCTCGTCTCCAGACTAAAGGGAGACTGTCT--CTTCAGAGTCCATACCATCTCAGACTCCAT
i mm10.chr10                I 3130 I 10
s canFam3.chr10              67346489 373 -  69331447 ----------------ggccGAAAAGAATGGCCAACATGC-CAAGGTGTT-AGCAATTATCGGGAAAGAG---------------AACAACTTGGCAAAAATGCCTACCTGAGATGTCGAAGCATCAAAACCTCCACTGACATTGCCATTACAGTCTTCACAAGAAAAGTGTCTTTCTTTGTTAACAGCACTAAAAGGCAAGAATGGATTAAAGAAACAGCATCCA-AATCAGTGTgcatgtggttcagggggaaaagccctgggcgaggaatcaggag------ctccacataatcaacaccccctccaccactaacacataagaaaccttgggaa-----------atcttcacgactaagttttctcatctgtgaaataa--ggaaatcatccctg--cAAAATCTGTCCTCGATCAACTTCCAT
i canFam3.chr10             C 0 C 0

a score=54714.000000
s hg38.chr12_GL383550v2_alt    155133 19 +    169178 agatatgattcCATAAAAC
s panTro4.chr12              31393201 19 + 134246214 agatatgattcCATAAAAC
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78598312 19 - 136387465 agatatgattcCATAAAAC
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54798091 19 + 123690457 agatatgattcCATAAAAC
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79703127 19 - 134985053 AGATATAATTCCACAAAAC
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80803018 19 - 137757926 AGATATAATTCCACAAAAC
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78755829 19 - 132286798 AGATATGATTCCATAAAAC
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74679377 19 - 128539186 AGATATGATTCCATAAAAC
i chlSab2.chr11             C 0 C 0
s canFam3.chr10              67346862 18 -  69331447 -GACATGATCCCATAATGC
i canFam3.chr10             C 0 C 0
e mm10.chr10                126899127 10 + 130694993 I
e calJac3.chr9               77489843  0 - 124281992 C

a score=86861.000000
s hg38.chr12_GL383550v2_alt    155152 136 +    169178 ATTTGTCCCccaggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcaggtggatcacctgaggtcgggagttcaagaccagcctgaccaacatggagaaccccccatctctactaaaaatac
s panTro4.chr12              31393220 135 + 134246214 ATTTGTCCAccaggcgcggtggctcacgcctgtaatcccagcactttgggaggctgaggcaggtggatcacctgaggtcgggagttcaagaccagcctgaccaacatggagaa-cccccatctctactaaaaatac
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78598331 135 - 136387465 ATTTGTCCgccaggcacagtggctcacgcctctaatcccaacactttgggaggccgaggcaggtggatcacctgaggtcgggagttcaagaccagcctgaccaacatggagaa-cacctatctctactaaaaatac
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54798110 135 + 123690457 ATTTGTTCgccaagtgcggtggctcacacctataatcccagcactttgggaggccaaggcgggtggatcacctgaggtcaggagttcaagaccagcctgaccaacatggagaa-cccctgtctctactaaaaatac
i nomLeu3.chr11             C 0 C 0
s calJac3.chr9               77489843 122 - 124281992 ---------ccagtcgcggtgcctcacgcctgtaatcccagcactttgggaggccaaggcaggtggatcac--aaggtcaagagatcgagaccatcctggcca--atggtgaa-actccgtctctactaaaaatac
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67346880  35 -  69331447 ATTT-----------------------------------------------------------------------GGTCCACTGATTAAGACCG--------------------C----------ATTAGAAATAC
i canFam3.chr10             C 0 C 0
e mm10.chr10                126899127  10 + 130694993 I
e chlSab2.chr11              74679396   0 - 128539186 C
e papAnu2.chr11              78755848   0 - 132286798 C
e macFas5.chr11              80803037   0 - 137757926 C
e rheMac3.chr11              79703146   0 - 134985053 C

a score=109029.000000
s hg38.chr12_GL383550v2_alt    155288 179 +    169178 ----aaaattagcc-gg-gtggtggtgggcgcctataatcccagctactcaggaggctgaggcaggagaatctcttgaacccgggaggcggaggttgcggtgagccgagatcgtgccactgcattccagcctgggc---aaaaaa---aaagagcaaaactacgtctc-aaaaaaaaaaaaaaaaaaaaaaa----------------------------------------------------------
s panTro4.chr12              31393355 180 + 134246214 ----aaaattagccggg-gtggtggtgggcgcctataatcccagctactcaggaggctgaggcaggaaaatctcttgaacccgggaggcggaggttgcggtgagccaagatcgtgccactgcattccagcctgggc----aaaaa---aaagagcaaaactccgtctcaaaaaaaaaaaaaaaaaaaaaaaa----------------------------------------------------------
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78598466 168 - 136387465 ----aaaattagccggg-gtggtggtggacgcctataatcccagctactcaggaggctgaggcaggagaattgcttgaacccgggaggcggaggttgcagtaagccgagatcgcgccactgcattccagcctgggc----aaaaa---aaagagcaaaactccgtctc------------aaaaaaaaaaaa----------------------------------------------------------
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54798245 179 + 123690457 ----aaaattagccggg-gtggtggtgggcgcctgtactcccagctactcaggaggctgaagcaggagaatcgcttgaacccaggaggcggagattgcagtgagccgagatcgcgccattgcactccagcctgggcaaaaaaaaa---aaagagcaaaactctgtctc-----aaaaaaaaaaaaaaaaaaa----------------------------------------------------------
i nomLeu3.chr11             C 0 C 0
s calJac3.chr9               77489965 238 - 124281992 aaagaaaattagctgggcatggtggcgtgcacctgtagtcccagctactcgagaggctgaggcag---aattgcttgaacccgggaggcagaggttgccgtgagccaagatcgtaccactgcactgcactctagcc----tagcacctggggacagagactctgactc-----aaaaaaaaaaaaaaaataaggagattgtatgtaaaatccatcctagttcaaattctatagatatgattcCACAAAGT
i calJac3.chr9              C 0 C 0
e mm10.chr10                126899127  10 + 130694993 I
e canFam3.chr10              67346915   0 -  69331447 C
e chlSab2.chr11              74679396   0 - 128539186 C
e papAnu2.chr11              78755848   0 - 132286798 C
e macFas5.chr11              80803037   0 - 137757926 C
e rheMac3.chr11              79703146   0 - 134985053 C

a score=9828.000000
s hg38.chr12_GL383550v2_alt    155467 3 +    169178 aTT
s panTro4.chr12              31393535 3 + 134246214 aTT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78598634 3 - 136387465 aTT
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54798424 3 + 123690457 aTT
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79703146 3 - 134985053 ATT
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80803037 3 - 137757926 ATT
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78755848 3 - 132286798 ATT
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74679396 3 - 128539186 ATT
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77490203 3 - 124281992 ATT
i calJac3.chr9              C 0 C 0
e mm10.chr10                126899127 10 + 130694993 I
e canFam3.chr10              67346915 0 -  69331447 C

a score=119260.000000
s hg38.chr12_GL383550v2_alt    155470 32 +    169178 TGTTCAACTGATTATGGCCATATTGCAAGTAT
s panTro4.chr12              31393538 32 + 134246214 TGTTCAACTGATTATGGCCATATTGCAAGTAT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78598637 32 - 136387465 TGTTCAACTGATTATGGCCATATTGCAAGTAT
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54798427 32 + 123690457 TGTTCAACTGATTATGGCCATATTGCAAGTAT
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79703149 32 - 134985053 TGTTCAACTGATTATGGCCATATTGCAAGTAT
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80803040 32 - 137757926 TGTTCAACTGATTATGGCCATATTGCAAGTAT
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78755851 32 - 132286798 TGTTCAACTGATTATGGCCATATTGCAAGTAT
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74679399 32 - 128539186 TGTTCAACTGATTATGGCCATATTGCAAGTAT
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77490206 32 - 124281992 TGTTCAACTGATTATGACCATATTGCAAGTAC
i calJac3.chr9              C 0 C 0
s mm10.chr10                126899137 32 + 130694993 TGGTCACCTGACTAGGACCACGCTGAAAATAT
i mm10.chr10                I 10 C 0
e canFam3.chr10              67346915  0 -  69331447 C

a score=897743.000000
s hg38.chr12_GL383550v2_alt    155502 231 +    169178 GCTGGAGTTCCTGCCCTTGGGCCAGAATGTTAAGAAGTGGATGTCAGAAGTCACTTCCTTTAAACCCCTCAAAGTTATACAACATCTGCAAGGTTCCTACATAA------CAAGCTGAGATTTCTTTTCCATTAAAAACAGTGCTC-AGGCT-GGTGTAGCAGAAAGGCCAGGCTTGGTAATTACTTACAAGA-AAATTTTGAGTACTGTCTTTATTAATCACCCAAGGTGAATGGTAAG
s panTro4.chr12              31393570 231 + 134246214 GCTGGAGTTCCTGCCCTTGGGCCAGAATGTTAAGAAGTGGATGTCAAACGTCACTTCCTTTAAACCCCTCAAAGTTATACAACATCTGCAAGGTTCCTACATAA------CAAGCTGAGATTTCTTTTCCATTAAAAACAGTGCTC-AGGCT-GGTGTAGCAGAAAGGCCAGGCTTGGTAATTACTTACAAGA-AAATTTTGAGTACTGTCTTTATTCGTCACCCAAGGTGAATGGTAAG
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78598669 231 - 136387465 GCTGGAGTTCCTGCCCTTGGGCCAGAATGTTAAGAACTGGATGCCAGAAGTCACTTCCTTTAAACCCCTCAAAGTTATACAACATCTGCAAGGTTCCTACATAA------CAAGCTGAGATTTCTTTTCCATTAAAAACAGTGCTC-AGGCT-GGTGTCACAGAAAGGCCAGGCTTGGTAATTACTTACAAGA-AAATTTTGAGTACTGTCTTTATTAATCACCCAAGGTGAATGGTAAG
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54798459 231 + 123690457 GCTGGAGTTCCTGCCCTTGGGCCAGAATGTTAAGAACTGGATGTCAGAAGTCACTTCCTTTAAACCCCTCAAAGTTATACAACATCTGCAAGGTTCCTACATAA------CAAGCCGAGATTTCTTTTCCATTAAAAACAGTGCTC-AGGCT-GGTGTAGCAGAAAGGCCAGGCTTGGTAATTACTTACAAGA-AAATTTTGAGTACTGTGTTTACTAATCACCCAAGGTGAATGGTAAG
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79703181 231 - 134985053 GCTGGAGTTCCTGCCCTTGGGCCAGAATGTTAAGAACTAGATGTCAGAAGTCACTTCCTTTAAACCCCTCAAAGTTATACAACATCTGCAAGGTTCCTAGATAA------CAAGCTGAGAGTTCTTTTCCATTAAAAACAATGCTC-AGGCT-GGTGTAGCAGAAAGGCCAGGATTGGTAATTACTTACAAGA-AAAATTTGAGTACTGTCTTTACTAATCACCCAAGGTGAATGGTAAG
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80803072 231 - 137757926 GCTGGAGTTCCTGCCCTTGGGCCAGAATGTTAAGAACTAGATGTCAGAAGTCACTTCCTTTAAACCCCTCAAAGTTATACAACATCTGCAAGGTTCCTAGATAA------CAAGCTGAGAGTTCTTTTCCATTAAAAACAATGCTC-AGGCT-GGTGTAGCAGAAAGGCCAGGATTGGTAATTACTTACAAGA-AAAATTTGAGTACTGTCTTTACTAATCACCCAAGGTGAATGGTAAG
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78755883 231 - 132286798 GCTGGAGTTCCTGCTCTTGGGCCAGAATGTTAAGAACTAGATGTCAGAAGTCACTTCCTTTAAACCCCTCAAAGTTATACAACATCTGCAAGGTTCCTACATAA------CAAGCTGAGAGTTCTTTTCCATTAAAAACAATGCTC-AGGCT-GGTGTAGCAGAAAGGCCAGGATTGGTAATTACTTACAAGA-AAAATTTGAGTACTGTCTTTACTAATCACCCAAGGTGAATGGTAAG
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74679431 231 - 128539186 GTTGGAGTTCCTGCCCTTGGGCCAGAATGTTAAGAACTATATGTCAGAAGTCACTTCCTTTAAACCCCTCAAAGTTATACAACATCTGCAAGGTTCCTACATAA------CAAGCTGAGAGTTCTTTTCCATTAAAAACAATGCTC-AGGCT-GGTGTAGCAGAAAGGCCAGGATTGGTAATTACTTACAAGA-AAAATTTGAGTACTGTCTTTACTAATCACCCAAGGTGAATGGTAAG
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77490238 226 - 124281992 GCTGGAGTTCCTGCCCTTGGGCCCGAATGTTAAGAACTGGATGTCAAAAGTGACTTCCTTTAAGCCCCTCAAAGTTATACAATGTCTGCAAGGTTCCCACATAA------CAAGCTGAGATGTTTTCTCCATTAAAAACAATGCTC-AGGCT-GCTATAGCAGAAAGGTCAGGATTGGTAATTACTTACAAGA-AAATTTTGAGTACTGTCTTTACTAAT-----AGGGTGAATGGTAAA
i calJac3.chr9              C 0 C 0
s mm10.chr10                126899169 226 + 130694993 GACAGAG-TCCCACCCTTGGGCCAGAGTGGTAAGAAGTAGATATCAGGAGTTATTTCCTCTAATCGTCTCTGGGTT----AACATCTGGAAGCCTCCTAC-TAATTAGTCCAAGCTATGGTTTCTTCACC-------ACAATGCCCTAGGCTGGGGGGAACGGAGAGGCCAAATTTGGTAATTACTGACAAGATAGACTGTGAATATTGCCTTTACTCAT-ATTCAAAATGAACAGCAGG
i mm10.chr10                C 0 C 0
s canFam3.chr10              67346915 225 -  69331447 GCTAGAGTTGCTACCTTCAGGCCAGGAGGTTAAGAAGTGGACCTCAGACGTCACCTCCTCTAATCATCTCAAAGTTAAACAACACCTGGAAGGCTCCTACCTAA------CAAGCTGAGATTTCTTCTCCATGAAGGACAATGCTG-AGGCT-GGAAGAACGGGAAAGCCAGGTTCGGTAATTATTTATAAGA----CTTTACATGTGGTCTTTACTAAACACTGGAGGT-AATGGTA--
i canFam3.chr10             C 0 C 0

a score=424132.000000
s hg38.chr12_GL383550v2_alt    155733 153 +    169178 AACTAGAAAATGAGCTGGGCTggcgcagtggctcacacctgtaatcccagcactttgggaggccgagg-tgggtggatcacttgaggacaggagttcgagaccagtctggtcaacatgctaagacccc-atttctactaaaaatacaaaaattag
s panTro4.chr12              31393801 153 + 134246214 AACTAGAAAATGAGCTGGGCTggcgcagtggctcacacctgtaatcccagcactttgggaggccgagc-tgggtggatcacttgaggacaggagttcgagaccagtctggtcaacatggtaagacccc-atttctactaaaaatacaaaaattag
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78598900 154 - 136387465 AGCTAGAAAATGAGCTgggctggcacagtggctcacacctataatcccagcactttgggaggccgagg-tgggtggatcacttgagaacaggagttcaagaccagtctggtcaaaatggtgagacccctatttctactaaaaatacaaaaattag
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54798690 153 + 123690457 AGCTAGAAAATGAGCTGGGCTggcacagtggctcacacctgtaatcccagcactttgggaggccgagg-tgggtgcatcacttgaggacaggagtttgagaccagtctggtcaacatggtgagacccc-atttctactaaaaatataaaaattag
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79703412 153 - 134985053 AGCTAGAAAATGAGCTGggctggagcagtggctcacgcctgtaatcccagcactttgggaggccaagg-ttggtggatcacttgcggacaggagcttgagaccagtctggtcaatgtggtgagacccc-atttctactaaaaatacaaaaattag
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80803303 153 - 137757926 AGCTAGAAAATGAGCTGggctggagcagtggctcacgcctgtaatcccagcactttgggaggccaagg-ttggtggatcacttgcggacaggagcttgagaccagtctggtcaatgtggtgagactcc-atttctactaaaaatacaaaaattag
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78756114 153 - 132286798 AGCTAGAAAATGAGCTgggctggagcagtggctcacgcttgtaatcccagcactttgggaggccaagg-tgggtggatcacttgcggacaggagcttgagaccagtctggtcaatgtggtgagacccc-atttctactaaaaatacaaaaattag
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74679662 153 - 128539186 AGCTAGAAAACGAGCTGggctggagcagtggctcacgcctgtaatcccagcagtttgggaagccaagg-tgggtggatcacttgcggacaggagttcgagaccagtctggtcaatgtggtgagacccc-acttctactaaaaatacaaaaattag
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77490464 154 - 124281992 AGCTAGAAAATGAGTTGGGCTggcacagtggctcacacctgtaatcccagcactttgggagactaaggccaggtggatcacatgaggacaggagttcaaggccagtctggtcaacacggtgagacccc-atctctactaaaaatacaaaaattag
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67347140  22 -  69331447 -------------------------------------------------------------------------------------------GAGCCAGAG-----------------------------ACTT-------------AAGAGTTAG
i canFam3.chr10             C 0 C 0
e mm10.chr10                126899395   0 + 130694993 C

a score=224740.000000
s hg38.chr12_GL383550v2_alt    155886 74 +    169178 ccgggcatggtggcgtgcgcctgtaaacccagctacttgggagactgagggagaagaattgcttgaacctggga
s panTro4.chr12              31393954 74 + 134246214 ccgggcatggtgacgtgcgcctgtaaacccagctacttgggagactgagggagaagaattgcttgaacctggga
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78599054 74 - 136387465 ccgggcatggtggcgtgcgcctgtaaacccagctacttgggagactgagggagaagaattgcttgaacctggga
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54798843 74 + 123690457 ccgggcatggtggcatgtgcctgtaaacccagctacttgtgagactgaggcagaagaattgcttgaacctggga
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79703565 74 - 134985053 ctgggcatggtgatgtgcgcctgtaaacacagctactcgggaggctgaggcagaagaattgcttgaacctggga
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80803456 74 - 137757926 ccgggcatggtgatgtgcgcctgtaaacccagctactcgggaggctgaggcagaagaattgcttgaacctggga
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78756267 74 - 132286798 ccgggcatggtgatgtgcgcctgtaaacccagctactcgggaggctgaggcagaagaattgcttgaacctggga
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74679815 74 - 128539186 ccgggcatagtgatgtgcgcctgtaaacccagctactcgggaggctgaggcagaagaattgcttgaacctggga
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77490618 74 - 124281992 ctgggtatggtggtgtatgcctgtaaacccagctactcagaaggctgaggcaagagaactgcttgaacctgaga
i calJac3.chr9              C 0 C 0
e mm10.chr10                126899395  0 + 130694993 C
e canFam3.chr10              67347162  0 -  69331447 C

a score=206108.000000
s hg38.chr12_GL383550v2_alt    155960  98 +    169178 gacggaggttgcactgagccgagacagcaccaacg--cactcccacctggacaacaagagcgagactctat---cccc----aaaaaaaaaaaaaaaCATGAGTTAG
s panTro4.chr12              31394028 101 + 134246214 gacggaggttgcactgagccgagacagcgccaacg--cactcccgcctggacaacaagagcgagactctatccccccc----ccaaaaaaaaaaaaaCATGAGTTAG
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78599128  97 - 136387465 gacggaggttgcagtgagccgagacagcgccaatg--cactcccgcctggacaacaaaagcgagactctat----ctc----aaaaaaaaaaaaaaaCATGAGTTAG
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54798917  88 + 123690457 gacggaggttgcagtgagccgagacagcgccactg--tactcccgcct---caacaagagcgagactgtct--------------aaaaaaaaaaaCCATGAGTTAG
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79703639 101 - 134985053 gagggaggttgcagtgagccaagacagtgccactgcccactcccgcctggacaacaagagcgagactctgt----ctc--aaaaaaaaaaaaaagaaCATTAGTTAG
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80803530 101 - 137757926 gagggaggttgcagtgagccaagacagcgccactgcccactcccgcctggacaacaagagcgagactctgt----ctc--aaaaaaaaaaaaaagaaCATTAGTTAG
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78756341 103 - 132286798 gagggaggttgcagtgagccaagacagcgccaCTGCCCACTCccgcctggacaacaagagcgagactctgt----ctcaaaaaaaaaaaaaaaagaactttagtTAG
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74679889 100 - 128539186 gaggaaggttgcactgagccaagacagcgccactgcccactcccgcctggacaataagagcgagactctgt----ctc---aaaaaaaaaaaaagaaCATTAGTTAG
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77490692  94 - 124281992 ggcagaggttgcactgagtcgagacagcactactg--cactcctgcctgggcaacaacagcgagactctgt----ctc-------aaaaaaagagaaGATGAGTTAG
i calJac3.chr9              C 0 C 0
s mm10.chr10                126899395  17 + 130694993 ------------------------------------------------------------------------------------------GACAGAGACTGAGCTGG
i mm10.chr10                C 0 C 0
e canFam3.chr10              67347162   0 -  69331447 C

a score=408230.000000
s hg38.chr12_GL383550v2_alt    156058 114 +    169178 GGCAGAAAATGTCCAAAGAGAACAAGGCCAGCCCGGAGACAATGCAGCCAATTACCTCTATTTACCCTATGGAAAAGACTTTGTGACCTCA---GAGAAATCTTAAG-----CAGTTCTCTT
s panTro4.chr12              31394129 114 + 134246214 GGCAGAAATTGTCCAAAGAGAACAAGGCCTGCCTGAAGACAATGCAGCCAATTACCTCTATTTACCCTATGGAAAAGACTTTGTGACCTCA---GAGAAATCTTAAG-----CAGTTCTCTT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78599225 114 - 136387465 GGCAGAAGATGTCCAAAGAGAACAAGGCCTGTCTGGAGACAATGCAGCCAATTACCTCTATTTACCCTATGGAAAAGACTTCGTGACCTCA---GAGAAATCCTAAG-----CAGTTCTCTT
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54799005 114 + 123690457 GGCAGAAGATGTCCAAAGAGAACAAGGCCTGCCTGGAGACAATGCAGCCAATTACCTCTATTTACCCTACAGAAAAGACTTCGTGACCTCA---GAGAAATCCTAAG-----CAGTTCTCTT
i nomLeu3.chr11             C 0 I 292
s rheMac3.chr11              79703740 114 - 134985053 GGCAGAAGATGTCCAAAGAGAACAAGGCCTACCTGGAAACAATGCAGCCAATTACCTCTATTTACCCTATGGAAAAGACTTCGTGACCTCA---GAGAAATCCTAAG-----CAGCTCTCTT
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80803631 114 - 137757926 GGCAGAAGATGTCCAAAGAGAACAAGGCCTGCCTGGAAACAATGCAGCCAATTACCTCTATTTACCCTATGGAAAAGACTTCGTGACCTCA---GAGAAATCCTAAG-----CAGCTCTCTT
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78756444 114 - 132286798 GGCAGAAGATGTCCAAAGAGAACAAGGCCTGCCTGGAAACAATGCAGCCAATTACCTCTATTTACCCTATGGAAAAGACTTCGTGACCTCA---GAGAAATCCTAAG-----CAGTTCTCTT
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74679989 114 - 128539186 GGCAGAAGATGTCCAAAGAGAACAAGGCCTGCCTAGAAACAATGCAGCCAATTACCTCTATTTACCCTATGGAAAAGACTTCGTGACCTCA---GAGAAATCCTAAC-----CAGTTCTCTT
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77490786 114 - 124281992 GGCAGAAGACGTCCAAAGAGAACAAGACTTGCCTGGAGACAATGCAGCCAATTACCTCCATTTACCCTATGGAAAAGACTTCATGACCTCA---GAGAAATTTTAAG-----TAGTTCTCTT
i calJac3.chr9              C 0 I 295
s mm10.chr10                126899412 100 + 130694993 GACAGA------------AGAACAAGGCCAG-CGGGAGAGCACATAGCC---CGCCACTGTTGAC------AGAGAAATCTTGTGGTCCCAAGTGAGAAATCCCAAGTGTAACAGCTCTGCT
i mm10.chr10                C 0 C 0
s canFam3.chr10              67347162 109 -  69331447 GGCAGAAGATGTAGGAAGAGAACACCACCTGCCTGGAAAGAAT--AGCCCATCACC---ACCTACCATATGGAAAAGGCTTTGTGGCCTAAAGTGAAAAACTGCAAG-----TAGCTCC---
i canFam3.chr10             C 0 C 0

a score=933792.000000
s hg38.chr12_GL383550v2_alt    156172 243 +    169178 AAGAAGAGAACTTGG----TTTTTGTTTTCAGCAGCCAGACCTCAGA-------GCAGCACTTC---AAAAAGAGTTACTTACCAACCTGAGTGTTTCATAGCATCAAGCAGAAGTTTGACATATGGATCT-AAAAAAGATATTGATTTAATTAAG-----TAATTGGAAAA-GTAGCACCAATTAAACTACCCAAATAGCAGTGTAAGATATTATCAAAAAGTAACTCACAggccagatgcagtggctcatgcctgtaatccc
s panTro4.chr12              31394243 243 + 134246214 AAGAAGAGAACTTGG----TTTTTGTTTTCAGCAGCCAGACCTCAGA-------GCAGCACTTC---AAAAAGAGTTACTTACCAACCTGAGTGTTTCATAGCATCAAGCAGAAGTTTGACATATGGATCT-AAAAAAGATATTGATTTAATTAAG-----TAATTGGAAAA-GTAGCACCAATTAAACTACCCAAATAGCAGTGTAAGATATTATCAAAAAGTAACTCACAggccagatgcagtggctcatgcctgtaatccc
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78599339 248 - 136387465 AAGAAGAGAACTTGG----TTTTTGTTTTCAACAGCCAGACCTCAGA-------GCAGCACTTC---AAAAAGAGTTACTTACCAACCTGAGTGTTTCATAGCATCAAGCAGAAGTTTGACATATGGATCT-AGAAAAGATATTGATTTAATTAAGTAAGTTAATTGGAAAA-GTAGCACCAATTAAACTACCCAAATAGCAGTGTAAGATATTATCAAAAAGTAACTCACAggccagatgcagtggctcatgcctgtaatccc
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54799411 249 + 123690457 aagaagagaaCTTGG----TTTTTGTTTTCAGCAGCCAGACCTCAGA-------GCAGCACTTC---AAAAAGAGTTACTTACCAACCTGAGTGTTTCATAGCATCAAGCAGAAGTTTGACATACGGATCTAAAAAAAGATATTGATTTAATTAAGTAAGCTAATTGGAAAA-GTAGCATCAATTAAACTACCCAAATAGCAGTGTAAGATATTATCAAAAAGTAACTCACAggccagatgcagtggctcatgcctataatccc
i nomLeu3.chr11             I 292 C 0
s rheMac3.chr11              79703854 248 - 134985053 AAGAAGAGAACTTGG----TTTTTGTTTTCAGCAGCCAGATCTCAGA-------GCAGCAGTTC---AAAAAGAGTTACTTACCAACCTGAGTGTTTCATAGCATCAAGCAGAAGTTTGACATACGGATCT-AAAAAAGATATTGATTTAATTAAGTAAGCTAATTGGAAAA-GTAGCACCAATTAAACTACCCAAATAGCAGTGTAAGATATTATCAAAAAGTAACTCACAggccagatgcagtggctcatgcctgtaatccc
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80803745 248 - 137757926 AAGAAGAGAACTTGG----TTTTTGTTTTCAGCAGCCAGATCTCAGA-------GCAGCAGTTC---AAAAAGAGTTACTTACCAACCTGAGTGTTTCATAGCATCAAGCAGAAGTTTGACATACGGATCT-AAAAAAGATATTGATTTAATTAAGTAAGCTAATTGGAAAA-GTAGCACCAATTAAACTACCCAAATAGCAGTGTAAGATATTATCAAAAAGTAACTCACAggccagatgcagtggctcatgcctgtaatccc
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78756558 248 - 132286798 AAGAAGAgaacttgg----tttttgttttcagcaGCCAGATCTCAGA-------GCAGCAGTTC---AAAAAGAGTTACTTACCAACCTGAGTGTTTCATAGCATCAAGCAGAAGTTTGACATACGGATCT-AAAAAAGATATTGATTTAATTAAGTAAGCTAATTGGAAAA-GTAGCACCAATTAAACTACCCAAATAGCAGTGTAAGATATTATCAAAAAGTAACTcacaggccagatgcagtggctcatgcctgtaatccc
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74680103 248 - 128539186 AAGAAGAGAACTTGG----TTTTTGTTTTCAGCGGCCAGATCTCAGA-------GCAGCACTTC---AAAAAGAGTTACTTACCAACCTGAGTGTTTCATAGCATCAAGCAGAAGTTTGACATACGGATCT-AAAAAAGATATTGATTTAATTAAGTAAGCTAATTGGGAAA-GTACCACCAATTAAACTACCCAAATAGCAGTGTAAGATATTATCAAAAAGTAACTCACAggccagatgcagtggctcatgcctgtaatccc
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77491195 243 - 124281992 aaaaagagaaaTTGG----TTTTTGTTTTCAGCAGCCAGACTGCAGA-------GCAGCACTTG---AAAAAGAGTCACTTACCAACCTGAGTGTTTCATAGCATCAAGCAGAAGTTTGACATATGGATCT-AAAAAAGATATTAAGTCAATTAAGTAAGTTAATTGGAAAA-GTAGCACCAATTAAACTACCCAAATAGCAGT-----ATATTATCAAAAAGTAACTCACAggccagatacagtggctcatgcctgtaatccc
i calJac3.chr9              I 295 C 0
s mm10.chr10                126899512 200 + 130694993 ------ATTAGTTGG----GGGTTG-----AGGGGGGGGACTCCAGAATATACGGTGACTTTTTAAAAAAAAGATTTACTTACCAACCTGAGTGTTTCATAGCATCAAGTAGAAGTTTGACATATGGATCT-ACAAAGA----------CATTAAGTATGCTCATTAGAAGATGTAGCAGCAATTAGTGCACCCAAGCAACAGG---------CACCACAAAACAACTCACAAAC-----------------------------
i mm10.chr10                C 0 C 0
s canFam3.chr10              67347271 212 -  69331447 --------AGTTTGGGGTTTTCATGTTTTTAGCAACCAGAACAGAGA-------CGAGCAGTAT---AAAAATGATTACTTACCAACCTGAGTGCTTCATGGCATCAAGCAGAAGTTTGACATAAGGATCT--AAAAAGATATTGATTCAATTAAATATGCTAGTTAGAAAA-ATAGCACCAATTAAATTACCCAAAAAGCAGT-----ATATTATCAAAAAGTAACGCACA--------------------------AATCTT
i canFam3.chr10             C 0 C 0

a score=313638.000000
s hg38.chr12_GL383550v2_alt    156415 105 +    169178 agcactttaggaggttgaggcgggtggatcatttgaggccaggag-ttcaagcccagcctgaccaacatggc-aaaccccgtctctactaaaaatacaaaaattagc
s panTro4.chr12              31394486 105 + 134246214 agcactttaggaggttgaggcgggtggatcatttgaggccaggag-ttcaagcccagcctgaccaacatggc-aaaccccgtctctactaaaaatacaaaaattagc
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78599587 105 - 136387465 agcactttaggaggttgaggcgggtggatcatttgaggccaggag-ttcaagcccagcctgaccaacgtggc-aaaccccgtctctactaaaaatacaaaaattagc
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54799660 105 + 123690457 agccctttaggaggttgaggcaggtggatcatttgaggccaggag-ttcaagcctagcctgaccaacatagt-aaaccccgtctctactaaaaatacaaaacttagc
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79704102 106 - 134985053 agcactttaggaggttgaggcaggtggatcatttgaggccaggag-ttcaagcccagcctgaccaacatggcaaaaccccatctctactaaaaatacaaaaattagc
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80803993 106 - 137757926 agcactttaggaggttgaggcaggtggatcatttgaggccaggag-ttcaagcccagcctgaccaacatggcaaaaccccatctctactaaaaatacaaaaattagc
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78756806 106 - 132286798 agcactttaggaggttgaggcaggtggatcatttgaggccaggag-ttcaagcccagcttgaccaacatggcaaaaccccatctctactaaaaatacaaaaattagc
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74680351 106 - 128539186 agcactttaggaggttgaggcgggtggatcatctgaggccaggag-ttcaagcccagcctgaccaacatggcaaaaccccatctctactaaaaatacaaaaattagc
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77491438 107 - 124281992 aacactttaggaggttgaggtgggtagatcacttgaggccgggagtttcgagcccagcctgaccaaaatggcaaaaccgtgtctctactaaaaacacaaaaattagc
i calJac3.chr9              C 0 C 0
s mm10.chr10                126899712  48 + 130694993 ---------------------------ACTATCTTAAACCA-GAG-T---------------CTAAAATGG--GAAT-------------AAAACGTGTAAATTAGC
i mm10.chr10                C 0 C 0
e canFam3.chr10              67347483   0 -  69331447 C

a score=364537.000000
s hg38.chr12_GL383550v2_alt    156520 145 +    169178 tgggcatggtggcacacgcctgtagtcccagctacttgggaagctgaggcatgagaatcacttgaacccaggagacagacattacagtgagctgagatcacaccactgcactccagcctggacgatagagtga--ctctgtctcaaa
s panTro4.chr12              31394591 143 + 134246214 tgggcatggtggcacacgcctgtagtcccagctacttgggaagctgaggcatgagaatcacttgaacccaggagacagacattacagtgagctgagatcacaccactgcactccagcctggacgatagagtga--ctctgtctc--a
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78599692 144 - 136387465 tgggcatggtggcacatgcctgtagtcccagctacttgggaagctgaggcatgagaatcacttgaacccagaagacagatgttacagtgagctgagatcacaccactgcactccagcctggacgatagagtga--ctctgttta-aa
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54799765 116 + 123690457 tgggcgtggtggcacacgcctgtagtcccag-----------------------------cttgaacccaggagacagacgttacagtgagctgagatcacaccactgcactccagcctggatgatagagtga--ctctgtctcaaa
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79704208 142 - 134985053 tgggcatggtggcacatgcctgtagtctcagctacttgggaagctgaggcatgagaatcgcttgaaccagggagacagacgttacagtgagctgagatcacaccactgcactccagcctggaagacagagtga----ctgtctc-aa
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80804099 142 - 137757926 tgggcatggtggcacatgcctgtagtctcagctacttgggaagctgaggcatgagaatcgcttgaaccagggagacagacgttacagtgagctgagatcacaccactgcactccagcctggaagacagagtga----ctgtctc-aa
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78756912 143 - 132286798 tgggcatggtggcacatgcctgtagtctcagctacttgggaagctgaggcatgagaatcgcttgaaccagggagacagacgttacagtgagctgagatcacaccactgcactccagcctggaagatagagtga----ctgtctcaaa
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74680457 144 - 128539186 tgggcatggtggcacatgcctgtagtcccagctacttgggaagctgaggcatgagaatcgcttgaaccagggaaacagacgttacagtgagctgagatcacaccactgcactccagcctggaagacagagtga--ctctgtctc-aa
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77491545 114 - 124281992 t--------------------------------actagggaagctgaggcatgagaattacttgaacctgggagacagacattacag-gagctgaaatcacaccactgcacttcagcctggatgatagaatgagactctgtctcaaa
i calJac3.chr9              C 0 C 0
e mm10.chr10                126899760   0 + 130694993 C
e canFam3.chr10              67347483   0 -  69331447 C

a score=163428.000000
s hg38.chr12_GL383550v2_alt    156665 45 +    169178 aaaaaaGTAATGTTATCTTAAAATTGGTAAAAATTGACATGAGAG
s panTro4.chr12              31394734 45 + 134246214 aaaaaaGTAATGTTATCTTAAAATTGGTAAAAATTGACATGAGAG
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78599836 45 - 136387465 aaaaaaGTAATGTTATCTTAAAATTGGTAAAAATTGACATGAGAG
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54799881 45 + 123690457 aaaaaaGTAATGTTATCTTAAAATTGGTAAAAATTGACATGAGAG
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79704350 45 - 134985053 aaaaaaGTAATCTTATCTTAAAATTGGTAAAAATTGACATGAGAG
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80804241 45 - 137757926 aaaaaaGTAATCTTATCTTAAAATTGGTAAAAATTGACATGAGAG
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78757055 45 - 132286798 aaaaaagtaatcttatCTTAAAATTGGTAAAAATTGACATGAGAG
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74680601 45 - 128539186 aaaaaaGTAATGTTATCTTAAAATTGGTAAAAACTGACATGAGAG
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77491659 45 - 124281992 aaaaaaGTAATCTTATCTTAAAGTTAGTAAAAATTGAAACAAGAG
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67347483 45 -  69331447 AATGAAGTAATACTATCTTAAAATTGTTAAAAATGGATATGAAAA
i canFam3.chr10             C 0 C 0
e mm10.chr10                126899760  0 + 130694993 C

a score=676573.000000
s hg38.chr12_GL383550v2_alt    156710 191 +    169178 GCCAAGCTTAAATCAACATCAAAGCAAGTTTGTACTG-AAATAAAACACTAATACAAATACCAAGAT-GGTACTACTAAGCATCTTAGACAATATCAACTATG-CTTTTAAAGTTCATTTTTAGTTAAATGATCAAACACGTTGTATTACGGTATAtaccaaaagactgagggaatctagggccacatt-cttag
s panTro4.chr12              31394779 191 + 134246214 GCCAAGCTTAAATCAACATCAAAGCAAGTTTGTACTG-AAATAAAACACTAATACAAATACGAAGAT-GGTACTACTAAGCATCTTAGACAATATCAACTATG-CTTTTAAAGTTCATTTTTAGTTAAATGATCAAACACGTTGTATTACGGTATAtaccaaaagactgagggaatctagggccacatt-cttag
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78599881 191 - 136387465 GCCAAGCTTAAATCAACATCAAAGCAAGTTTGTACTG-AAATAAAACACTAATACAAATACCAAGAT-GGTACTACTAAGCATCTTAGACAATATCAACTATG-CTTTTAAAGTTCATTTTTAGTTAAatgatcaaacaagttgtattacggtatataccaaaagactcagggaatctagggccacatt-cttag
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54799926 191 + 123690457 GCCAAGCTTAAATCAACATCAAAGCAAGTTTGTACTG-AAATAAAACACTAATCCAAATACCAAGAT-GGTACTACTAAGCATCTTAGACAATATCAACTATG-CTTTTAAAGTTCATTTTTAGTTAAATGATCAAACacattgtattatggtatatactaaaagactgagggaatctagggccacatt-cttag
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79704395 192 - 134985053 GCCAAGTTTAAATTAACATCAAAGCAAGTCTGTACTG-AAAAAAAACACTAACACAAATACAAAGAT-GGTACTACTAAGCATCTTAGACAGTATCAACTATG-CTTTTAAAGTTCATGTTTAGTTAAATGATCAAACACGTTGTATTACGATATATACCAAAAGACTGAGGGAATCTACGGCCACATTCCTTAG
i rheMac3.chr11             C 0 I 310
s macFas5.chr11              80804286 192 - 137757926 GCCAAGTTTAAATTAACATCAAAGCAAGTTTGTACTG-AAAAAAAACACTAACACAAATACAAAGAT-GGTACTACTAAGCATCTTAGACAGTATCAACTATG-CTTTTAAAGTTCATGTTTAGTTAAATGATCAAACACGTTGTATTACGATATATACCAAAAGACTGAGGGAATCTACGGCCACATTCCTTAG
i macFas5.chr11             C 0 I 309
s papAnu2.chr11              78757100 192 - 132286798 GCCAAGTTTAAATTAACATCAAAGCAAGTTTGTACTG-aaaaaaaaCACTAACACAAATACAAAGAT-GGTACTACTAAGCATCTTAGACAGTATCAACTATG-CTTTTAAAGTTCATGTTTAGTTAAATGATCAAACACGTTGTATTACGATATATACCAAAAGACTGAGGGAATCTACGGCCACATTCCTTAG
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74680646 193 - 128539186 GCCAAGTTTAAATTAACATCAAAGCAAGTTTGTACTGAAAAAAAAAAACTAACACAAATACAAAGAT-GGTACTATTAAGCATCTTAGACAATATCAACTATG-CTTTTAAAGTTCATGTTTAGTTAAATGATCAAACACGTTGTATTATGGTATACACCAAAAGACTGAGGGAATCTACGGCCACATTCCTTAG
i chlSab2.chr11             C 0 I 311
s calJac3.chr9               77491704 182 - 124281992 GACAAGCTTAAATTAACATCAAAGCAAATTTGTACTG-AAATAAAACACTAATACAAATACCAAGAT-GGTACTACTAAGCATCTTAGACAATATCAAATATG-CTTTTAAAGTTCATTTTTAGTTAAATGATCAAACACAATCTATT---------ACCaaatggctgagggaatctagggccacatt-cctag
i calJac3.chr9              C 0 C 0
s mm10.chr10                126899760 159 + 130694993 GCCAA--TTAAATCAA------------GTCATGACG-AAATAGAACATAAATACAAACACTAAAAT-GGCGCCCCCATGTATCTT-------------TATA-C--CGAAAGTTGGT-TTTGCTAAAGTGACTAAACGCTTCGCATTAGGGCCCGTGTTAGGAGAACATGGGCATCCTGGGCCACGGT---TAG
i mm10.chr10                C 0 I 2
s canFam3.chr10              67347528 193 -  69331447 GACCAGCTTAAGTTAACATAAAAACAAGTCTTTAATG-AAATAAAACACTGATACAAATATCAAGATGGGCACTATTAAACATCTTCAATAATATAAAAAATGATTTTTAAAGCCCATTTTTAGCTACATGATCGAAAACACTGTATTAAAGCATATACCGAAATAATGCGGGAATTTGGGGTCACATC-CGTAG
i canFam3.chr10             C 0 C 0

a score=34947.000000
s hg38.chr12_GL383550v2_alt    156901 8 +    169178 aagtgaac
s panTro4.chr12              31394970 8 + 134246214 aagtgaac
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78600072 8 - 136387465 aagtgaac
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54800117 8 + 123690457 aagtgaac
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79704897 8 - 134985053 aaGTGaac
i rheMac3.chr11             I 310 C 0
s macFas5.chr11              80804787 8 - 137757926 aaGTGaac
i macFas5.chr11             I 309 C 0
s papAnu2.chr11              78757292 8 - 132286798 AAGTGAAC
i papAnu2.chr11             C 0 I 310
s chlSab2.chr11              74681150 8 - 128539186 aaGTGaac
i chlSab2.chr11             I 311 C 0
s calJac3.chr9               77491886 8 - 124281992 aagcgaac
i calJac3.chr9              C 0 C 0
s mm10.chr10                126899921 8 + 130694993 AAACAAAC
i mm10.chr10                I 2 C 0
s canFam3.chr10              67347721 8 -  69331447 AAACGAAC
i canFam3.chr10             C 0 C 0

a score=671430.000000
s hg38.chr12_GL383550v2_alt    156909 187 +    169178 aacagcacagtacctagatttgaggaagcc-----agtagccacactgt--tctgtcctgatcagatcata--ccggcaataccatgtcccatgctgagtactaccaccttctaaattggacctg-cc-actgaagctcttccacaggg-gatggtgactagggtactaca-gactattt-ccagtaagaagcaagaaagg
s panTro4.chr12              31394978 187 + 134246214 aacagcacagtacctagatttgaggaagcc-----agtagccacactgt--tctgtcctgatcagatcata--ccggcaataccatgtcccatgctgagtactaccaccttctaaatgggacctg-cc-actgaaactcttccacaggg-gatggtgactagggtactaca-gactattt-ccagtaagaagcaagaaagg
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78600080 188 - 136387465 aacagcacagtacctagatttgaggaagcc-----agtagccacactgt--tctgtcctgatcagatcata--ctggcaacaccatgtcccatgctgagtactaccaccttctaaatgggacctg-cc-actgaagctcttccacacag-gatggtgactagggtactacaggactattt-ccagtaagaagcaagaaagg
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54800125 188 + 123690457 aacagcacagtacctagatttgaggaagcc-----agtagccatactgt--tctgtcccggtcagatcata--ctggcaacaccatgtcccatgctgagtactaccacattctaaacaggacctg-cc-actgaagctcctccccaggg-gatggtgactaggttactacaggactattt-ccagtaagaagcaagaaagg
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79704905 189 - 134985053 aacagcacagtacctagatttggggaagcc-----agtagccacactgt--tctgtcctggtcagaccata--ctggcaacaccatgtcccatgctgagtactaccacgttctaaacgggacctg-cc-actgaagctcttccacaggg-gatagtgactagggtactacaggactacttcccagtaagaagcaagaaagg
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80804795 189 - 137757926 aacagcacagtacctagatttggggaagcc-----agtagccacactgt--tctgtcctggtcagaccata--ctggcaacaccatgtcccatgctgagtactaccacgttctaaacgggacctg-cc-actgaagctcttccacaggg-gatagtgactagggtactacaggactacttcccagtaagaagcaagaaagg
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78757610 189 - 132286798 aacaGCACAGTACCTAGATTTGGGGAAGCC-----AGTAGCCACACTGT--TCTGTCCTGGTCAGACCATA--CTGGCAACACCATGTCCCATGCTGAGTACTACCACGTTCTAAACGGGACCTG-CC-ACTGAAGCTCTTCCACAGGG-GATAGTGACTAGGGTACTACAGGACTACTTCCCAGTAAGAAGCAAGAAAGG
i papAnu2.chr11             I 310 C 0
s chlSab2.chr11              74681158 188 - 128539186 aacagcacagtacctagatttgggcaagcc-----agtagccacactgt--tctgccctggtcagaccata--ctggcaacaccatgtcccatgctgagtactaccacgttctaaacgggacctg-cc-actgaagctcttccacaggg-gatagtgactagggtactacaggactactt-ccagtaagaagcaagaaagg
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77491894 190 - 124281992 aacagcatagtacctagatttgaggaagcc-----agtagccacactgttctctaccctggtcagaccatg--ctggcaacaccatgtcccatgctgagtactaccacgctctaaacaggacctg-cc-actgaagctcttccacaggg-gatagtgactaggataccacgggactattt-tcagtaagaagcaagaaagg
i calJac3.chr9              C 0 C 0
s mm10.chr10                126899929 168 + 130694993 --CAGCATAGAACCTAGACTGGAGGAAGGC-----AGCGCCTACACTGC--TCT---CTG--------------TGGTAGCACCATGCCTCGCTCTGAGTACCACAGCCC----AATGGGACCTGCCC-ACCAAAGTTCTTCAATGAGG-GTTAGCAAGCAGAAATGTGTGAGTCTATGG-CCAGTAAGAGAGAAGAACGG
i mm10.chr10                C 0 I 294
s canFam3.chr10              67347729 187 -  69331447 TGCagcacggtacccagattagaagaaggtagttaagtagccccactggcatctttcctggtcagaccacaagctaacagta-----gacctttctaagt---accacgctctaaacaggaactg-ccaactgaagctcttccatggggagaaggcaactagaacagtacaggccttcaa-tcagtaagaagaaagg----
i canFam3.chr10             C 0 C 0

a score=738292.000000
s hg38.chr12_GL383550v2_alt    157096 208 +    169178 atttggggggttggaaaggag-acagaagacttaactaggaccacactactttcaagta-ttgaaggggtgccatgtgggactagattcagttaatatttcttcaaagggcagaacaaggaccaaagtatggaagttacatgtggc-agatttcagctcagtatgagaaaggatttttctccaacaatt-aaagctggtgaaacaatagaca
s panTro4.chr12              31395165 208 + 134246214 atttggggggttggaaaggag-acagaagacttaactaggaccacagtactttcaagta-ttgaaggggtgccatgtgggactagattcagttaatatttcttcaaagggcagaacaaggaccaaagtatggaagttacatgtggc-agatttcagctcagtatgagaaaggatttttctccaacaatt-aaagctggtgaaacaatagaca
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78600268 208 - 136387465 atttggggggttggaaaggag-acagaagacttaactaggacgacagtactttcaagta-ttgaaggggtgccatgtgggactagaatcagttaatatttcctcaaagggcagaacaaggaccaaagtatggaagttacatgtggc-agatttcagctcagtatgagaaaggatttttctccaacaatt-aaagctggtgaaacaatagaca
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54800313 208 + 123690457 atttggagggttggaaaggag-acagaagacttaactaggaccatagtaccttcaagta-ttgaaggggtgccatgtgggactagattcagttaatatttcttcaaagggcagaacaagaaccaaagtatggaagttacatgtggc-agatttcagctcagtatgagaaaggatttttctccaacaatt-aaagctgatgaaacaatagaca
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79705094 208 - 134985053 atttagggggttggaaaggag-acagaagacttaactaggaccacagtagcttcaagta-ttgaaggggtgccatgtgggactagattcagttaatatttcttcaaagggcagaacaaggaccaaagtatggaagttacacgcagc-agatttcagctcagtaagagaaaggatttttctccaacaatt-aaagctggtgaaacaatagaca
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80804984 208 - 137757926 atttagggggttggaaaggag-acagaagacttaactaggaccacagtagcttcaagta-ttgaaggggtgccatgtgggactagattcagttaatatttcttcaaagggcagaacaaggaccaaagtatggaagttacacgcagc-agatttcagctcagtaagagaaaggatttttctccaacaatt-aaagctggtgaaacaatagaca
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78757799 208 - 132286798 ATTTAGGGGGTTGGAAAGGAG-ACAGAAGACTTAACTAGGACCACAGTAGCTTCAAGTA-TTGAAGGGGTGCCATGTGGGACTAGATTCAGTTAATATTTCTTCAAAGGGCAGAACAAGGACCAAAGTATGGAAGTTACACGCAGC-AGATTTCAGCTCAGTAAGAGAAAGGATTTTTCTCCAACAATT-AAAGCTGGTGAAACAATAGACA
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74681346 209 - 128539186 atttagggggttggaaaggag-acagaagacttaactaggaccacagtagcttcaagta-ttgaaggggtgccatgtgggactagattcagttaatatttcttcaaagggcagaacaaggaccaaagtatggaagttacatgcagcaagatttcagctcattaagagaaaggatttttcttcaacaatt-aaagctggtgaaacaatagaca
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77492084 207 - 124281992 atttgggagggtggaaaggag-acagaagacttaa-taggaccacagtagcttcaagta-ttgaaggggtgggatgtgggactagattcagttaatatttcttcaaaggacagaacaaggaccaaagtgtggaagttacatgtggc-agatttcagctcaacacgagaaaggatttttctccaacagtt-aaagctggtgaaacaacagaca
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67347916 190 -  69331447 agctgtggatttggaaaggagaataaaaaacttaactaggaccacaatggcttcaagtatttgaaggagtgccatgtgggaataaatcccatcaatatttttttaaaaggcagaacgaggaccaaagaatagaagttac--------aga------------acaagaaaggatttttc--caacaattaaaaggtgttaataaaatagaCA
i canFam3.chr10             C 0 I 1428
e mm10.chr10                126900097 294 + 130694993 I

a score=738941.000000
s hg38.chr12_GL383550v2_alt    157304 239 +    169178 gtagattgaaagagcctcaaggaacaggtaactgtattccaggagaggtctgtagagtatctggccagcaatagcacagaggtttccctgtaagggg------acggggaggcctagacgattcctgagggcccttccacatctaagactctatgGGCCCGTGACTACTACAGGAAAGTACAAGGAGCCCAAATGCCTCTGATATTAACTTTTCACATAGGCATCTTGTCTGAGAATATAAATGC
s panTro4.chr12              31395373 239 + 134246214 gtagattgaaagagcctcaaggaacaggtaactgtattccaggagaggtctgtagagtatctggccagcaatagcacagaggtttccctgtaagggg------acggggaggcctagacgattcctgagggcccttccacatctaagactctatgGGCCCGTGACTACTACAGGAAAGTACAAGGAGCCCAAATGCCTCTGATATTAACTTTTCACATAGGCATCTTGTCTGAGAATATAAATGC
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78600476 239 - 136387465 gtagattgaaagagcctcaaggaacaggtaactgtattccaggagaggtctgtagagtatctggccagcaacagcacagaggtttccctgtaagggg------acagggaggtctagacgattcctgagggcccttccacatctaagactctatgGGCCCATGACTACTACATGAAAGTACAAGGAACCCAAATGCCTCTGATATTAACTCTTCACATAGGCGTCTTCTCTGAGAATATAAATGC
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54800521 239 + 123690457 gtagattgaaaaagcctcaaggaacaggtaactgtgttccaggagacgtctgtagagtatctggccagaaatagcacagaggtttccctgtaagggg------acagggaggcctagacgattcctgagggcccttccacatctaagactctatgGGCCCGTGACTACTACAGGAAAGTACAAGGAACGCAAATGCCTCTGATACTAACTTTTCACATAGGTGTCTTGTCTGAGAATATAAATGC
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79705302 239 - 134985053 gtagattgaaagagcctcagggaacaggtaactgtgttccagtagaggtctgtggagtatctggccagcaatggcacagaggtttccttgtaagggg------acagggaggcctagacgattcctcagggcccttccacatctaagactctatgGGCCCGTGACTACTACAGGAAAGTACAAGGAACCCAAATGCCTCTGATATTAACTTTTCCCATAAGCATCTTGTCTGAGAGTATAAATGC
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80805192 239 - 137757926 gtagattgaaagagcctcagggaacaggtaactgtgttccagtagaggtctgtggagtatctggccagcaatggtacagaggtttccttgtaagggg------acagggaggcctagacgattcctcagggcccttccacatctaagactctatgGGCCCGTGACTACTACAGGAAAGTACAAGGAACCCAAATGCCTCTGATATTAACTTTTCCCATAGGCATCTTGTCTGAGAGTATAAATGC
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78758007 245 - 132286798 GTAGATTGAAAGAGCCTCAGGGAACAGGTAACTGTGTTCCAGTAGAGGTCTGTGGAGTATCTGGCCAGCAATGGCACAGAGGTTTCCTTGTAAGGGGACAATTACAAGGAGGCCTAGACGATTCCTCAGGGCCCTTCCACATCTAAGACTCTATGGGCTCGTGACTACTACAGGAAAGTACAAGGAACCCAAATGCCTCTGATATTAACTTTTCCCATAGGCATCTTGTCTGAGAGTATAAATGC
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74681555 239 - 128539186 gtagattgaaagagcctcagggaacaggtaactgtgttccactagaggtctgtggagtatctggccagcaatggcacagaggtttccttgtaagggg------acagggaggcctagacgattcctcagggcccttccacatctaagactctatgGGCCCATGACTACTACAGAAAAGTACAAGGAACCCAAATGCCTCTGATATTAACTTTTCCCATAGGCATCTTGTCTGAGAGTATAAATGC
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77492291 238 - 124281992 atagattgaaagggcttcaaggaacaagtaactatgttccaggagagatctgtggagtatctggccagcaatggcacagaggttttcctgtaagggg------acagggaggctt-gatgattcctgagggcccttccacatctaagactctatgGGCCTGTGACTACTACAGGAAAGTATAAGGAACCTAAATGTCTCTAATATTAACTTTTCACACAGGCATCTTGTCTGAGAGTATAAATGC
i calJac3.chr9              C 0 C 0
e mm10.chr10                126900097 294 + 130694993 I
e canFam3.chr10              67348106 1428 -  69331447 I

a score=233319.000000
s hg38.chr12_GL383550v2_alt    157543 83 +    169178 ACAGCCAATTATATGATGTAACCC-AAAA-----AAAGTGAAAAAGAAACTAAG------GTTTAAAAAAAATGTTGAAGGC-AAAAATAGGTGAG
s panTro4.chr12              31395612 83 + 134246214 ACAGCCAATTATATGATGTAACCC-AAAA-----AAAGTGAAAAAGAAACTAAG------GTTTAAAAAAAATGTTGAAGGC-AAAAATAGGTGAG
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78600715 78 - 136387465 ACAGCCAATTATA-----TAACCC-AAAA-----AAAGTGAAAAAGAGACTAAG------GTTTAAAAAAAATGTTGAAGGC-AAAAATAGGTAAG
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54800760 83 + 123690457 ACAGCCAATTATATGATGTAACCC-AAAA-----AAAGTGAAAAAGAAACTAAG------ATTTAAAAAAATTGTTGAAGGA-AAAAATAGGTGAG
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79705541 81 - 134985053 ACAGCCAATTATATGACGTAACCC-AAAA-----AAAGTGAAAAAGAAACTAAT------GTTTAAAAAAAAGGTTGAAGAC-AAAAATAGGCG--
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80805431 81 - 137757926 ACAGCCAATTATATGACGTAACCC-AAAA-----AAAGTGAAAAAGAAACTAAT------GTTTAAAAAAAAGGTTGAAGAC-AAAAATAGGTG--
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78758252 82 - 132286798 ACAGCCAATTATATGACGTAAcccaaaaa-----aaagtgaaaaagaaactaat------gtttaaaaaaaaggttgaagac-aaaaataggcg--
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74681794 82 - 128539186 ACAGCCAATTATATGACGTAACCCAAAAA-----AAAGTGAAAAAGAAACTAAG------GTTTAAAAAAAAGGTTGAAGAC-AAAAATAGGCG--
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77492529 83 - 124281992 ACAGCAAATAATATGGCGTAACCC-CAAA-----AAACAGAAAAAGAAACTAAG------GTTTAAAAAAAATATTGAAGGC-AAAAACAGGCAAG
i calJac3.chr9              C 0 I 315
s canFam3.chr10               1982389 95 +  69331447 ACATTTGGCTATATGATATAAACC-AAAACATAGAAAAAGAAAAGGAATCAAAGTTGGGTGTTTTTTTTAAGTGTTGAAAGCAAAAAACAGGTGAG
i canFam3.chr10             T 21475 I 12
e mm10.chr10                126900097 294 + 130694993 I

a score=523719.000000
s hg38.chr12_GL383550v2_alt    157626 153 +    169178 AAAAAGAAATGTGAGATGAGAAAGTCAGGTATAGGTTACTGCTTTACCAACCTGCCCCTTGC-AAGAGTGTTCACAGTAGAATAATTATTGTTAACAATACGTAtt----attgagtgaataccaggtagcaggcaccatattaagcacattattatt
s panTro4.chr12              31395695 157 + 134246214 AAAAAGAAATGTGAGATGAGAAAGTCAGGTATAGGTTACTGCTTTACCAACCTGCCCCTTGC-AAGAGTGTTCACAGTAGAATAATTATTGTTAACAATAAGTATTATTAATTGAGTGAATACCAGGTAGCAGGCACCATATTAAGCACATTATTATT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78600793 157 - 136387465 AAAAAGAAATGTGAGTTGAGAAAGTCAGGTATAGGTTACTGCTTTACCAACCTGCCCCTTGC-AAGAGTGTTCACAGTGGAATAATTATTGTTAACAATAAGTATTATTAATTGAGTGAATACCAGGGAGCAAGCACCATATTAAGGACATTATTATT
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54800843 157 + 123690457 AAAAAGAAATGTGAGATGAGAAAGTCAGGTATAGGTTACTGCTTTACCAACCTGCCCCTTGC-AAAAGTGTTCACAGTAGAATAATTATTGTTAACAATAAGTATTATTAATTGAGTGAATACCAGGTAGCAGGCACCATATTAGGCACATTATTATG
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79705622 155 - 134985053 --AAAGAAATGTGAGATGAGGAAGTCAGGTATAGGTTACTGCTTTACCAACCTGCCCCTTGC-AAGAGTGTTCACAGTAGAATAATTATTGTTAACAATAAGTATTATTAATTGAGTGAATACCAGGTAGCAGGTACCATATTAAGCACATTATTATT
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80805512 155 - 137757926 --AAAGAAATGTGAGATGAGGAAGTCAGGTATAGGTTACTGCTTTACCAACCTGCCCCTTGC-AAGAGTGTTCACAGTAGAATAATTATTGTTAACAATAAGTATTATTAATTGAGTGAATACCAGGTAGCAGGTACCATATTAAGCACATTATTATT
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78758334 155 - 132286798 --aaagaaaTGTGAGATGAGAAAGTCAGGTATAGGTTACTGCTTTACCAACCTGCCCCTTGC-AAGAGTGTTCACAGTAGAATAATTATTGTTAACAATAAGTATTATTAATTCAGTGAATACCAGGTAGCAGGTACCATATTAAGCACATTATTATT
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74681876 155 - 128539186 --AAAGAAATGTGAGATGAGAAAGTCAGGTATAGGTTACTGCTTTACCAACCTGCCCCTTGC-AAGAGTGTTCACAGTAGAATAATTATTGTTaacaataagtattattaattgagtgaataccaggtagcaggtaccgtattaagcacattaTTATT
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77492927 144 - 124281992 aaaaaaaaaTGTGAGATGAGAAAGGCAGGTATAGGTTATTGCTTTACTAACCTGCCCCTTGC-AAGAGTGTTCACAGCAGAATACTTATTGTTAACA-------------AGTGAGTGAATACTAGGTAGCAGGCACCATATTAAGCGCATTATTATT
i calJac3.chr9              I 315 C 0
s canFam3.chr10               1982496 150 +  69331447 AAAAAGTAGTGGGAGATGAGAAGGATAGGTATAGGTTACTGCTTTATTATCCTGCCCCCTCCTAAGAGTGTTAACAGTAAAATAATTA---TTAGTACTGAGTatttt---tttaatgtatatcaggtgtcaggatatatgctca-cacttta-catt
i canFam3.chr10             I 12 C 0
e mm10.chr10                126900097 294 + 130694993 I

a score=1139726.000000
s hg38.chr12_GL383550v2_alt    157779 390 +    169178 catgcaACTAGGAGAATTTTACAAAATTAAAACAGTTTCAAAAGTCTGTAGTCCTTGTACTT----------------AAAAAAAAAAAA--------------AACCATGGTTTAGTACTTCAAAAAGGACCTGCAGCAATATTTAG-AATAAAATTGCTTTGGTG---aaaaaaaaaaaaaaaaaaGAGACTCCCATGAGGTCTGGTTTCCACCACCACGCCCCACCCAGGGATAGCATTTTAAAGCTGCAGGTTGACACTTTAATACCACCAAAAGACCCTCCCAGCCACCCTGCCCTTGGAAGATCAAGGTCCATTGATTCCTACTGGGGCTCATGTTCAGCACCCCACCTTCCTCACATCCTATCTATTTCCACTCTTCCTCCACTGTGTGGCCCTTCCACTGTAAAAACagctaccat
s panTro4.chr12              31395852 389 + 134246214 CATGCAACTAGGAGAATTTTACAAAATTAAA--AGTTTCAAAAGTCTGTAGTCCTTGTACTT----------------AAAAAAAAAAAA-------------CAACCATGGTTTAGTACTTCAAAAAGGACCTGCAGCAATATTTAG-AATAAAATTGCTTTGGTG---AAAAAAAAAAAAAAAAAAGAGTCTCCCATGAGGCCTGGTTTCCACCACCACGCCCCACCCAGGGATAGCATTTTAAAGCTGCAGGTTGACACTTTAATACCACCAACAGGCCCTCCCAGCCACCCTGCCCTTGGAAGATCAAGGTCCATTGATTCCTACTGGGGCTCATGTTCAGCACCCCACCTTCCTCACATCCTATCTATTTCCACTCTTCCTCCACTGTGTGGCCCTTCCACTGTAAAAACagctaccat
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78600950 394 - 136387465 CATGCAACTAGGAGAATTTTACAAAATTAAAACAGTTTCAAAAGTCTGTAGTCCTTGTACTT----------------AAAAAAAAAAAA-------------GTACCATGGTTTAGTACTTCAAAAAGGACCTGCAGCAATATTGAG-AATAAAATTGCTTTGGTGGGAAAAAAAAAAAAAAAAAAAGAGTCTCCCATGAGGCCTGGTTTCCACCACCACGCCCCACCCAGGGATAGGATTTTAAAGCTGCAGGTTGACACTTTAATACCACCAACAGGCCCTCCCAGCCACCCTGCCCTTGGAAGATCAAGGTCCATTGATTCCTACTGGGGCTCATGTTCAGCACCCCACCTTCCTCACATCCTATCTATTTCCACTCTTCCTCCACTGTGTGGCCCTTCCACTGTAAAAACagctaccat
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54801000 398 + 123690457 CATGCAACTAGGAGAATTTTACAGAGTTAAAACAGTTTCAAAAGTCTGTAGTCCTTGTACTT----------------AAAAAAAAAAAA-----TGCAGGCAGCACCATGGTTTAGTACTTCAAAAAGGACCTGCAGCAATATTTAGAAAAAAAATTGCTTTGGTG-----AAAAAAAAAAAAAAAAGAGTCACCCATGAGGCCTGGTTTCCACCACCACGCCCCACCCAGGGATAGGATTTTAAAGCTTCAGGTTGACACTTTAATATCACCAACAGGCCCTCCCAGCCACCCTGCCCTTGGAAGATCAAGGTCCATTGATTCCTACTGGGGCTCATGTTCAGCACCCTGCCTTCCTCACATCCTATCTGTTTCCAGTCTTCCACCACTGTGTGGCCTTTCCACTGTAAAAACAGCTACCAT
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79705777 399 - 134985053 CATGCAACTAGGAGAATTTTACAAAGTTAAAACAGTTTCAAAAGTCTGTAGTCCTCATACTT---------------AAAAAAAAAAAAAACAAATGCAGGCAGCACCTTGGTTTAGTACTTCAAAAAGGACCTGCAGCAATATTTAG-AATAAAATTGTTTTGGTG---------AAAAAAAAAAAAAAGTCTCCCATGAGGACTGGTTTCCGCCACCATGCCCCACGCAGGGACAGGATTTTAAAGCTGCAGGTTGACACTTTAATACCACCAACAGGCCCTCCCAGCCACCCTGCCCTTGGAAGATTGAAGTCCATTGATTCCTACTGGGGCTCATGTTCAGCACCCCACCTTCCTCACATCCTATCTATTTCTACTCTTCCTCCACTGTGTGGCCCTTCCACTATAAAAACagctaccat
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80805667 397 - 137757926 CATGCAACTAGGAGAATTTTACAAAGTTAAAACAGTTTCAAAAGTCTGTAGTCCTCATACTT----------------AAAAAAAAAAAAACAAATGCAGGCAGCACCTTGGTTTAGTACTTCAAAAAGGACCTGCAGCAATATTTAG-AATAAAATTGTTTTGGTG----------AAAAAAAAAAAAAGTCTCCCATGAGGACTGGTTTCCGCCACCATGCCCCACGCAGGGACAGGATTTTAAAGCTGCAGGTTGACACTTTAATACCACCAACAGGCCCTCCCAGCCACCCTGCCCTTGGAAGATTGAAGTCCATTGATTCCTACTGGGGCTCATGTTCAGCACCCCACCTTCCTCACATCCTATCTATTTCTACTCTTCCTCCACTGTGTGGCCCTTCCACTATAAAAACagctaccat
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78758489 403 - 132286798 CATGCAACTAGGAGAATTTTACAAAGTTAAAACAGTTTCAAAAGTCTGTAGTcctcatactt--------------aaaaaaaaaaaaaaacaaatgcaggCAGCACCTTGGTTTAGTACTTCAAAAAGGACCTGCAgcaatatttag-aataaaattgttttggtg------aaaaaaaaaaaaaaaaagtctcccatGAGGACTGGtttccgccaccacgccccacacAGGGACAGGATTTTAAAGCTGCAGGTTGACACTTTAATACCACCAACAGGCCCTCCCAGCCACCCTGCCCTTGGAAGATTGAGGTCCATTGATTCCTACTGGGGCTCATGTTCAGCACCCCACCTTCCTCACATCCTATCTATTTCTACTCTTCCTCCACTGTGTGGCCCTTCCACTATAaaaacagctaccat
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74682031 412 - 128539186 CATGCAACTAGCAGAATTTTACAAAGTTAAAACAGTTTCAAAAGTCTGTAGTCCTCATACTTaaaaaaaaaaaaaaaaaaaaaaaaaaaaaCAAATGCAGGCAGCACCTTGGTTTAGTACTTCAAAAAGGACCTGCAGCAATATTTAG-AATAAAATTGCTTTGGTG-----------GAAAAAAAAAAAGTCTCCCATGAGGCCTGGTTTCCGCCACCATGCCCCACGCAGGGATAGGATTTTAAAGCTGCAGGTTGACACTTTAATACCACCAACAGGCCCTCCCAGCCACCCTGCCCTTGGAAGATTGAGGTCCATTGATTCCTACTGGGGCTCATGTTCAGCACCCCACCTTCCTCACATCCTATCTATTTCTACTCTTCCTCCACTGTGTGGCCCTTCCACTGTAAAAACagctgccat
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77493071 380 - 124281992 CACGCAAATAAAAGAATTTTACAAAGTTAAAATGGTTTCAAAAGTCTGTAGTCCTTGTACTT----------------AAAAA------------TGCTGTAAACACTGTGGTTTAGTACTT-AAAAAGGACCTGCAGCAACATTTAG-AATAAATCTGCTTTGGTG-------------GAAAAAAAAAGTACCCCATGAGGCCTAGTTTCTGCCACCATGCCCCACCCAGGGATAGGATTTTAAAGCTGCAGGTTGACACTTTAATACCAGCAACAGGCCCTCTTAGCCACCCTTCCCTTGGAAGATCAAGGCCCACTGATTCCTATTGAGGTTCA-GTTCAGCACCCCACCTTCCTCACATCCTGTCTATTTCTACTCTTCCTCTACTGTGTGGCCCTTCCACTGTAAAAACAGCTACCAT
i calJac3.chr9              C 0 I 519
e mm10.chr10                126900097 294 + 130694993 I
e canFam3.chr10               1982646   0 +  69331447 C

a score=189280.000000
s hg38.chr12_GL383550v2_alt    158169 82 +    169178 ttattcagctcagctcctgatatgctggtactttacattcataaaatcagtactttttttttttttagacagggtctcgctc
s panTro4.chr12              31396241 82 + 134246214 ttattcagctcagctcctgatatgctggtactttacattcataaaatcaatactttttttttttttagacagggtctcgctc
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78601344 82 - 136387465 ttactcagctcagctcctgatatgctagtactttacattcataaaatcaatactttttttttttttagacagggtctcgctc
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54801398 78 + 123690457 TTATTCAGCTCAGCTCCTGATATGCTGGCACTTTACATTCATAAAATCAATAC---TTTTTTTTTTAGACA-GGTCTCGCTC
i nomLeu3.chr11             C 0 M 100
s rheMac3.chr11              79706176 79 - 134985053 ttattcagctcagctcctgatatgctggtactttacattcataaaagcaatac---ttttttttttagacagggtcttgctc
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80806064 80 - 137757926 ttattcagctcagctcctgatatgctggtactttacattcataaaatcaatac--tttttttttttagacagggtcttgctc
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78758892 80 - 132286798 ttattcaGCTCAGCTCCTGATATGCTGGTACTTTACATTCATaaaatcaatac--tttttttttttagacagggtcttgctc
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74682443 79 - 128539186 ttattcagctcagctcctgatatgctggtactttacattcataaaatcaatac---ttttttttttagacagggtcttgctc
i chlSab2.chr11             C 0 C 0
e mm10.chr10                126900097 294 + 130694993 I
e canFam3.chr10               1982646  0 +  69331447 C
e calJac3.chr9               77493451 519 - 124281992 I

a score=316567.000000
s hg38.chr12_GL383550v2_alt    158251 133 +    169178 tgttgcccaggctggagtgcagtgatgcaataacagctcactgcagcctcagcctcctgggttcaagcaaatctcctgcctcagcctcctaaatagttgggactgcaggcatgagccaccacatccagctaat-
s panTro4.chr12              31396323 133 + 134246214 tgttgcccaggctggagtgcagtgatgcaataacagctcactgcagcctcagcctcctgggttcaagcaaatctcctgcctcagcctcctaaatagttgggactgcaggcatgagccaccacatccagctaat-
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78601426 132 - 136387465 tgttgcccaggctggagtgcagtgatgcaatcatagctcactgcagcctcagcctcctgggttcaagcaaatctcctgcctcagcctcctaaatagctgggactgcaggcatgagccaccacatccagctag--
i ponAbe2.chr12             C 0 C 0
s rheMac3.chr11              79706255 131 - 134985053 tgttgcccaggttggagtgcagtgatgcaatcatagctcactgcagcctcagcctcctgggttcaagcaaatctcctgcctcagcctcctaaatagctgggactacaggcacgagccaccacat-cagctaa--
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80806144 131 - 137757926 tgttgcccaggttggagtgcagtgatgcaatcatagctcactgcagcctcagcctcctgggttcaagcaaatctcctgcctcagcctcctaaatagctgggactacaggcacgagccaccacat-cagctaa--
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78758972 131 - 132286798 tgttgcccaggttggagtgcagtgatgcaatcatagctcactgcagcctcagcctcctgggttcaagcaaatctcctgcctcagcctcctaaatagttgggactacaggcacgagccaccacat-cagctaa--
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74682522 131 - 128539186 tgttgcccaggctggagtgcagtgatgcaatcatagctcactgcagcctcagcctcctgggttcaagcaaatctcctgcctcagcctcctaaatagctgggactacgggcacgagccaccacat-cagctaa--
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77493970 133 - 124281992 tgttgcccaggctggagtgcagtgatgcaatcatagctcactacagcctcagcctcctgggctcaagcagatctcctgcctcagcctcccaaatagctgggaatacaggcatgagacaccacacccagctaa-t
i calJac3.chr9              I 519 C 0
e mm10.chr10                126900097 294 + 130694993 I
e canFam3.chr10               1982646   0 +  69331447 C
e nomLeu3.chr11              54801476 100 + 123690457 M

a score=417298.000000
s hg38.chr12_GL383550v2_alt    158384 134 +    169178 tttttttattttttgtagagacagggtctccctatattacccaggctggtcttaaacatctgagctcaagcaatccccctgccttggctccccaaagtgctgagattacaggcatgagccaccgtacccagccc
s panTro4.chr12              31396456 134 + 134246214 tttttttattttttgtagagacagggtctccctatattacccaggctggtcttaaacatctgagctcaagcaatccccctgccttggctccccaaagtgctgagattacaggcatgagccaccatacccagccc
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78601558 134 - 136387465 tttttttattttttatagagacagggtctccctatattacccaggctggtcttaaacatctgatctcaagcaatccccctgccttggctccccaaagtgctgagattgcaggcatgagccaccgtacccagccc
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54801579 132 + 123690457 tttttttattttttgtagagacagggtct-cctatattacccaggctggtctcaaacatctggggtcaagcgat-cccctgccttggctcccgaaagtgctgagattacaggcatgagccactgtacccagccC
i nomLeu3.chr11             M 100 C 0
s rheMac3.chr11              79706386 134 - 134985053 tttttttatttgttgtagagacagggtctccctatattgcccaggctggtcttaaacatctgagttcaagcgatccccctgccttggctccccaaagtgctgagattacaggcatgagccaccgtacccagccc
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80806275 134 - 137757926 tttttttatttgttgtagagacagggtctccctatattggccaggctggtcttaaacatctgagttcaagcgatccccctgccttggctccccaaagtgctgagattacaggcatgagccaccgtacccagccc
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78759103 134 - 132286798 tttttttatttgttgtagagacagggtctccctatattgcccaggctggtcttaaacatctgagttcaagcgatccccctgccttggctccccaaagtgctgagattacaggcatgagccaccgtacccagccc
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74682653 134 - 128539186 tttttttatttgttgtagagacagggtctccctatattgcccaggctggtcttaaacatctgagttcaagcgatccccctgccttggctccccaaagtactgagattacaggcatgagccaccgtacccagccc
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77494103 133 - 124281992 -ttttttattttttgtagagacaggctctccctatattgtccaggctggtcttaaacatctgagctcaagcaatcctcctgccttggcttcccaaagtgctgggattataggcatgagccaccgtacccagACC
i calJac3.chr9              C 0 C 0
e mm10.chr10                126900097 294 + 130694993 I
e canFam3.chr10               1982646   0 +  69331447 C

a score=1150577.000000
s hg38.chr12_GL383550v2_alt    158518 349 +    169178 cataaaatctattcttcacaacaaccctaaaaaaggta-tttt--------ccccttctctttttttac-----aataaggatagtgaggatcagagaagttaagtcac-cttccacacctg---aggaaagggatccgcatttgaacccacatctaactctgcaacc-catactctttccactctattccactttgaagcaccttcaaggcagggtgcta------actcatctttctactt-cc-cccaccagaacctgggaggcactcaatacatatttgtacagtaaatACAATATCATCATTCTCTCCCCTTTTACCCTCAACTCCCCTTCCTCCTCCTACCTCCCTGAGTCTCTA-CAAGCAGGTAATCCC
s panTro4.chr12              31396590 349 + 134246214 cataaaatctattcttcacaacaaccctaaaaaaggta-tttt--------ccccttctctttttttac-----aataaggatagtgaggatcagagaagttaagtcac-cttccacacctg---aggaaagggatccgcatttgaacccacatctaactctgcaacc-catactctttccactctattccactttgaagcaccttcaaggcagggtgcta------actcatctttctactt-cc-cccaccagaacctgggaggcactcaatacatacttgtacagtaaatACAATATCATCATTCTCTCCCCTTTTACCCTCAACTCCCCTTCCTCCTCCTACCTCCCTGAGTCTCTA-CAAGCAGGTAATCCC
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78601692 349 - 136387465 cataaaatctattcttcacaacaaccctaaaagaggcattttt--------ccccttctctttttctat-----aataaggatagtgaggatcagagaagttaagtcactcttccacaactg---aggaaagggatccgcatttgaacccacatctaa--ctgcaacc-catactctttccactctattccactttgaagcaccttcaaggcagggtgcta------actcatctttctactt-cc-cccaccagaacctgggaggcactcaatacatatttgtACAGTAAGTACAATATCATCATTCTCTCCCCTTATACCCTCGACTCCCCTTCCTCCTCCTACCTCCCTGAGTCTCTA-CAAGCAGGTAATCCC
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54801711 351 + 123690457 CATAAAatctattcttcacaacaaccctaaaagaggtattttt--------ccccttctctttttttat-----aataaggatagtgaggatcagagaagttaagtcac-tcttcacacctg---aggaaagggatccgcatttgaacccacatctaactctgcagcctcatactctttccactctattccactttgaagcaccttcaaggcagggtgcta------actcatctttctactt-cc-cccaccagaacctgggaggcactcaatacatatttgtacagtaaatACAATATCATCATTCTCTCCCCTTTTACCCTTGACTCCCCTTCCTCCTCCTACCTCCCTGAGTCTCTA-CGAGCAGGTAATCCC
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79706520 346 - 134985053 cataaaatctatttttcacaacaaccctaaaagaggtattttt--------ccccttctctttttttac-----aataagaataatgaggatcagagaagttaagtcactcttccacatctg---aggaaagggatccgcatttgaacccacatctaactctgcaacc-cacactccttccactctattccactttgAAGCACCTTCCAGGCAAGGTGCT-----------ATCTTTCTACTT-CC-CCCACCAAAACCTGGGAGGCACTCAATACATATTTGTATAGTAAATACAATATCATCATTCTCTCCCCTTTTACCCTGGCCTCCCCTTCCCCCTCCTACCTCCCTGAGTCTCTA-CAAGCAGGTAATCCC
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80806409 346 - 137757926 cataaaatctatttttcacaacaaccctaaaagaggtattttt--------ccccttctctttttttac-----aataagaataatgaggatcagagaagttaagtcactcttccacatctg---aggaaagggatccgcatttgaacccacatctaactctgcaacc-cacactccttccactctattccactTTGAAGCACCTTCCAGGCAAGGTGCT-----------ATCTTTCTACTT-CC-CCCACCAAAACCTGGGAGGCACTCAATACATATTTGTATAGTAAATACAATATCATCATTCTCTCCCCTTTTACCCTGGCCTCCCCTTCCCCCTCCTACCTCCCTGAGTCTCTA-CAAGCAGGTAATCCC
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78759237 346 - 132286798 cataaaatctatttttcacaacaaccctaaaAGAGgtattttt--------ccccttctctttttttac-----AATAAGAATAGTGAGGatcagagaagttaagtcactCTTCCACACCTG---AGGAAAGGGATCCGCATTTGAACCCACATCTAACTCTGCAACC-CACACTCTTTCCACTCTATTCCACTTTAAAGCACCTTCCAGGCAGGGTGCT-----------ATCTTTCTACTT-CC-CCCACCAAAACCTGGGaggcactcaatacatatttgtatagTAAATACAATATCATCATTCTCTCCCCTTTTACCCTcgcctccccttccccctcctacTTCCCTGAGTCTCTA-CAAGCAGGTAATCCC
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74682787 346 - 128539186 cataaaatctatttttcacaacaaccctaaaagaggtattttt--------ccccttctctttttttat-----aataagaatagtgaggatcagagaagttaagtcactcttccacacctg---aggaaagggatccgcatttgaacccacatctaactctgcaacc-cacactctttccactctattccactttgaagcaccttccaggcagggtgct-----------atctttctactt-cc-cccaccaaaacctgggaggcactcaatacatatttgtatagtaaatACAATATCATCATTCTCTCCCCTTTTACCCTCGCCTCCCCTTCCCCCTCCTACCTCCCTGAGTCTCTA-CAAGCAGGTAATCCC
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77494236 349 - 124281992 CATAAAatttattcacaacaacaaccccaaaagaggcattttt--------ccacttctctttttttac-----aattaggatagtgaggatcagagaagttaagtcactcttccacacctg---cagaaagggatcggcatttgaacccacatcgaactctgcaacg-catactctttccact-tcttccacatcgaagcaccttcaaagcggggtgcta------actca--tttgtacttccc-cccaccagaacctgggaggcactcaatacatatttgtGCAGTAAACACAGTATCATCATTCTCTCCCCTCTTACCCTCTATTCCCCTTCCTCCTCCTACCTCCCTGAGTCTCTA-TAAGCAGGTAATCCC
i calJac3.chr9              C 0 C 0
s canFam3.chr10               1982646 354 +  69331447 cataaaacctacttctc---acaaccctaagagagaaatttttatcccccaacccttccctctttgtgtgtgcagatagggatggaggggatcag-gaagttaagccagtcttccacacccgataagggaagggatacgaatttgaacccatgtctaa--ctgcagcc-catgctctttccactgAGTTCCacttcaaa-cctctaaaaggcacagtcctggtccttactcatctttgaattt-ccgcacaccagaacctaggaggcgttccatacacatttCCACAG-GGATACAATCTCATCATT-------------CCCATAACCCCGCTCCTCCTTCCCACTCCCTTGATTCCCCAGTATGCAGGTAACCTC
i canFam3.chr10             C 0 C 0
e mm10.chr10                126900097 294 + 130694993 I

a score=517778.000000
s hg38.chr12_GL383550v2_alt    158867 154 +    169178 AAGAAGGTTGGAAAATCTTTCGGTGGTTGACTTTTGAACTGTGACTGACT--------AGCTATGAAATAGTAACCTTGCTTTGGGACAAGTATGTTTAAGACTAA-TTTTCTGAATGTATCTGAAAGTAAACTTAAGAAGTCTATGTCAATGTAAAGGAATT
s panTro4.chr12              31396939 154 + 134246214 AAGAAGGTTGGAAAATCTTTCGGTGGTTGACTTTTGAACTGTGACTGACT--------AGCTATGAAATAGTAACCTTGCTTTGGGACAAGTATGTTTAAGACTAA-TTTTCTAAATGTATCTGAAAGTAAACTTAAGAAGTCTATGTCAATGTAAAGGAATT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78602041 154 - 136387465 AAGAAGGTTGGAAAATCTTTCGGTGGTTGACTTTTGAACTGTGACTGACC--------AGCTATGAAATAGTAACCTTGCTTTGGGACAAGTACGTTTAAGACTAA-TTTTCTAAATGTATCTGAAAGTAAACTTAAGAAGTCTATGTCAATGTAAAGGAATT
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54802062 162 + 123690457 AAGAAGGTTGGAAAATCTTTCGGTGGTTGACTTTTGAACTATGACTGACTGACTGACCAGCTGTGAAATAGTGACCTTGCTTTGGGACAAGTACGTTTAAGACTAA-TTTTCTAAATGTATCTGAAAGTAAACTTAAGAAGTCTATGTCAATGTAAAGGAATT
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79706866 150 - 134985053 AAGAAGGTTGGAAAATCTTTCCGTGGTTGACTTTTGAACTGTGACTGACC--------AACTATAAAATAGTAACCTTGCTTTGGGACAAGTACGTTTAAGACTAA-TTTTCCAAATGTATCTGAAAGTACACT----AAGTCTATGTCAATGTAAAGGAATT
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80806755 150 - 137757926 AAGAAGGTTGGAAAATCTTTCCGTGGTTGACTTTTGAACTGTGACTGACC--------AACTATAAAATAGTAACCTTGCTTTGGGACAAGTACGTTTAAGACTAA-TTTTCCAAATGTATCTGAAAGTACACT----AAGTCTATGTCAGTGTAAAGGAATT
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78759583 150 - 132286798 AAGAAGGTTGGAAAATCTTTCCGTGGTTGACTTTTGAACTGTGACTGACC--------AACTATAAAATAGTAACCTTGCTTTGGGACAAGTACGTTTAAGACTAA-TTTTCCAAATGTATCTGAATGTACACT----AAGTCTATGTCAATGTAAAGGAATT
i papAnu2.chr11             C 0 I 322
s chlSab2.chr11              74683133 150 - 128539186 AAGAAGGTTGGAAAATCTTTCCGTGGTTGACTTTTGAACTGTGACTGACC--------AACTATAAAACAGTAACCTTGCTTTGGGACAAGTACGTTTAAGACTAA-TTTTCCAAATGTATCTGAAAGTACACT----AAGTCTATGTCAATGTAAAGGAATT
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77494585 154 - 124281992 AAGAAGGCTGTAAAATGTTTGGGTGGTTGATTTTTTAACTGTGACTGGCC--------AGCTATAAAATAGTAACCTTGCTTTGGGACACGTACATTTAAGTCTGA-TTTTCTAAATGTATCTGAAAGTAAACTTAGGAAGTCTACGTCAATGTGAAGGAATT
i calJac3.chr9              C 0 C 0
s mm10.chr10                126900391 149 + 130694993 aagaagacagtaaAATCTTTGATCAGTTGATGATTGAATTATGACCAATT-------CTGCTATAAAATAGTAACTATTTGGAGGGTCGAATACATTTAAATCTTACTTTCCTAAATAAATCTGAG-GTAGACA--GGCAATCT--GCAGATGCAGAGGAG--
i mm10.chr10                I 294 C 0
s canFam3.chr10               1983000 103 +  69331447 AAGAAGATTGGAAAATCTTTGGGTGCTTAACTTTTGAACTGTGATTGGC---------AGCTATGA---AGTAACCTTGCTTTAGGACAAGTAGGTTTAAGACTCT-T-----------------------------------------------AAGGAGTT
i canFam3.chr10             C 0 C 0

a score=212741.000000
s hg38.chr12_GL383550v2_alt    159021 62 +    169178 AAGAAATCTTCTCTAGTGCAATGTCTCTGGGACGGGAGAGAAATTTGTCAATGGGCAGTTGT
s panTro4.chr12              31397093 62 + 134246214 AAGAAATCTTCTCTACTGCAATGTCTCTGGGACGGGAGAGAAATTTGTCAATGGGCAGTTGT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78602195 62 - 136387465 AAGAAATCTTCTCTAGTGCAATGTCTCTGGGACGGGAGAGAAATTTGTCAATGGGCAGTTGT
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54802224 62 + 123690457 AAGAAATCTTCTCTAGTGCAATGTCTCTGGGACGGGAGAGAAATTTGTCAATGGGCAGTTGC
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79707016 62 - 134985053 AAGAAATCTTCTCTAGTGCAATGTCTCTGCTACTGGAGAGAAATTTGTCAATGGGCAGTTGT
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80806905 62 - 137757926 AAGAAATCTTCTCTAGTGCAATGTCTCTGCTACTGGAGAGAAATTTGTCAATGGGCAGTTGT
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78760055 62 - 132286798 aagaaatcttctcTAGTGCAATGTCTCTGCTACTGGAGAGAAATTTGTCAATGGGCAGTTGT
i papAnu2.chr11             I 322 C 0
s chlSab2.chr11              74683283 62 - 128539186 AAGAAATCTTCTCTAGTGCAATGTCTCTGCTACTGGAGAGAAATTTGTCAGTGGGCAGTTGT
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77494739 62 - 124281992 AAGAAATCTTCTCCAGTGCAATGTCCATAGGACTGGAGAGTAATCTGTCAATGGGTAGGTGT
i calJac3.chr9              C 0 C 0
s mm10.chr10                126900540 48 + 130694993 -------------CAAGGCAGTGTCCC-GGGACTGGAGATAAATTGCTCAGTGGGAGCCAGT
i mm10.chr10                C 0 C 0
s canFam3.chr10               1983103 57 +  69331447 AACAAA---ACTCTAGTGCAATGTCCCTGAGACT--AGAGAAGTTGTGCACCAGGTAGTTGt
i canFam3.chr10             C 0 n 0

a score=324805.000000
s hg38.chr12_GL383550v2_alt    159083 110 +    169178 GTCCCTGTTTAACCCAcagcagttcttaacctttgtggggtcgttggcctctttgagaatatgatgaagctattaactctctcccccga--ccaaaaaaaaatacacTTTGg
s panTro4.chr12              31397155 110 + 134246214 GTCCCTGTTTAACCCAcagcagttcttaacctttgtggggtcgttggcctctttgagaatatgatgaagctattaactctctcccccga--ccaaaaaaaaatacacttagg
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78602257 110 - 136387465 GTCCCTGTTTAACCCAcagcagttcttaacctttgtggggtcgttggcctctttgagaatatgatgaagctattaactctctcccccga--ccaaaaaaaaatactcttagg
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54802286 110 + 123690457 GTCCCTGTTTAACCCAcagcagttcttaacctttgtggggtcgtgggcctctttgagaatatgatgaagctatttactctctcccccca--ccaaaaaaatatgcacttagg
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79707078 111 - 134985053 GTTCCCGTTTAACCCAcagcagttcttaacctttgtgtggtcgttggcctctatgagattataatgaagctataaactctctctcccac-caaaaaaaaaaatgtacttagg
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80806967 112 - 137757926 GTTCCCGTTTAACCCAcagcagttcttaacctttgtgtggtcgttggcctctttgagaatataatgaagctataaactctctctcccacaaaaaaaaaaaaatgtacttagg
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78760117 110 - 132286798 GTTCCTGTTTAACCCACAGCAGTTCTTAACCTTTGTGGGGTCGTTGGCCTCTTTGAGAATATAATGAAGCTATTAACTCTctctcccac--aaaaaaaaaaatgtacttagg
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74683345 108 - 128539186 GTTCCTGTTTAACCCAcagcagttcttaacctttgtggcgtcgttggcctctttgagaatataatgaagctattaactctctctcccac----aaaaaaaaatgtacttagg
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77494801 109 - 124281992 GTACCTGTTTAACCCAT-GCAgtctttaaagtttttggggtaattggcctcttggagaatatgatgaagccattaactctctccttccc--ccccaaaaaaatgcacttagg
i calJac3.chr9              C 0 C 0
s mm10.chr10                126900588 101 + 130694993 GTGCCTGGGTGACCCGCGGCAATAATAaacctcttagatgtcacaggcttcttagagactatgatgaagctaggaactctccct-----------agaaaaatgcacttagg
i mm10.chr10                C 0 I 164
e canFam3.chr10               1983160   0 +  69331447 I

a score=707123.000000
s hg38.chr12_GL383550v2_alt    159193 314 +    169178 gccgggc------gcagtgactcacgcctgtaatcccagcactttgggaggccgaggcaggcagatcacgaggtcaggagatcaagaccatcctggctaacacggtgaaaacccgtctctactaaaaatacaaaaaattagcagggtgtggtggcgagcgcctgtagtcccagctactcgggaggctgaggcaggagaacggcgtgaacccagtaggcggagcttgcagtgagcaaagatcgcgccactgcaccccagcctgggcgacagagcgagactccgtc-tc----------aaaaaaaaaaaaaaaaTGCACTTAGGGG----------------------------CACACA
s panTro4.chr12              31397265 316 + 134246214 gccgggc------gcagtgactcacgcctgtaatcccagcactttgggaggccgaggcgggcagatcacgaggtcaggagatcaagaccatcctggctaacacggtgaaaacccgtctctactaaaaatacaaaaaattagcagggtgtggtggcgagcgcctgtagtcccagctactcgggaggctgaggcaggagaacggcgtgaacccagtaggcggagcttgcattgagcaaagatcccgccactgcaccccagcctgggcgacagagcgagactccgtc-tc----------aaaaaaaaaaaaaaaatgcacttagggg--------------------------cacacaca
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78602367 329 - 136387465 gccgggc------gcggtgactcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcacaaggtcaggagatcaagaccatcctggctaacacggtgaaaacccgtctctactaaaaatacaaaaaattagcagggcgtggtggcgagcgcctgtagtcccagctactcgggaggctgaggcaggagaacggcgtgaacccagtaggcggagcttgcagtgagccgagatcgcgccactgcaccccagcctgggcgacagagcgagactccgtcaga----------aaaaaaaaaaaaaaaatgcatttaggggcac--------------acacacacacacacaca
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54802396 307 + 123690457 gccgggc------gcggtgactcacgcctgtaatcccagcactttgggaggccgaggcgggcagatcacgaggtcaggagatcaagaccatcctggctaacacggtgaaaacccgtttctactaaaaatacaaaaaattagcagggcgtggtggcgagcacctgtagtcccagctactcgggaggctgaggcaggagaacagcgtgaacccagtaggcggagcttgcagtgagcagagatcgcgccactgcaccccagcctgggcgacagagcgagactccgtc-tc-----------aaaaaaaaaaaaaaatgcacttagggg----------------------------------
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79707189 355 - 134985053 gctggtcgcagtggcagtgactcacgcctgtaatccc-gcactttgggaggccaaggcggatggatcacgaggtcaggagatcgagatcatcttggctaacacggtgaaaccccggctctactaaaaatacaaaaaattagcagggcgtggtggcgagctcctgtagtcccagctactcaggaggctgaggcaggagaatggtgtgaacctgggaggcggagcttgcagtgagccgagatcgcgccactgcactccagcctgggcgacagagcaagactccgtc-tcgaaaaaaaaaaagaaagaaaaagaaaTACACTTAGGcacat--acacacacacacacacacacacacacaca
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80807079 329 - 137757926 gctggtc------gcagtgactcacgcctgtaatccc-gcactttgggaggccaaggcggatggatcacgaggtcaggagatcgagatcatcttggctaacacggtgaaaccccggctctactaaaaatacaaaaaattagcagggtgtggtggcgagctcctgtagtcccagctactcaggaggctgaggcaggagaatggcgtgaacctgggaggcggagcttgcagtgagccgagatcgcgccactgcactccagcctgggcgacagagcaagactccgtc-tcgaaaaaaaaaaagaaagaaaaagaaatgcacttaggcacat----------------------acacacaca
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78760227 325 - 132286798 gccgggc------gcagtgactcacgcctgtaatccc-gcactttgggaggccaaggcggatggatcacgaggtcaggagatcgagatcatcttggctaacacggtgaaaccccggctctactaaaaatacaaaaaattagcagggcgtggtggcgagctcctgtagtcccagctactcaggaggctgaggcaggagaatggcgtgaacctgggaggcggagcttgcagtgagccgagatcgcgccactgcactccagcctgggcgacagagcaagactccgtc-tcaaaaaaaaaaaaaaaagaaaaagaaatgcacttaggcacat--------------------------acaca
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74683453 343 - 128539186 gccgggc------gcagtgactcacgcctataatccc-gcactttggaaggccaaggcggatggatcacaaggtcagaagatcgagatcatcttgactaacacggtgaaaccccggctctactaaaaatacaaaaaattagcagggcgtggtggcgagctcctgtagtcccacctactcaggaggctgaggcaggagaatggcgtgaacctgggaggcggagcttgccttgagccgagatcgcgccactgcactccagcctgggcgacagagcaagcctccgtc-tc--------aaaaaaaagaaaaagaaaTGCACTTAGGcacatacacacacacacacacacacacacacacaca
i chlSab2.chr11             C 0 C 0
e mm10.chr10                126900689 164 + 130694993 I
e canFam3.chr10               1983160   0 +  69331447 I
e calJac3.chr9               77494910   0 - 124281992 C

a score=532579.000000
s hg38.chr12_GL383550v2_alt    159507 203 +    169178 CACAcacatacacacgatttcacagaccatttcagggatttctacgctctgaagcccatt-catgCAT---------GAACCACTTCCAAGGAACGGTAGGTTTGCAAAAC-TGCTTTTATATTTTTACAGCCTTGGTATGCCTTAATT-ACATTTTTACATTTTTACAGCCTTTGTGTGCCTTAATTAACCTGGCTGGCACTTTAAAACTTGGC
s panTro4.chr12              31397581 204 + 134246214 cacacacatacacacgatttcacagaccatttcagggatttctacgctctgaagcccatt-catgCAT---------GAACCGCTTCCAAGGAACGGTAGGTTTGCAAAAC-TGCTTTTATATTTTTACAGCCTTTGTATGCCTTAATTAACATTTTTACATTTTTACAGCCTTTGTGTGCCTTAATTAACCTGGCTGGCACTTTAAAACTTGGC
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78602696 212 - 136387465 cacacacacacacacgatttcacaggccatttcagggatttctacgatctgaagcccatt-catgcacgaaggctaagaaccgctTCCAAGGAAGGGTAGGTTTGCAAAAC-TGTTTTTACATTTTTACAGCCTTTGTATGCCTTAATT-ACATTTTTACATTTTTACAGCCTTTGTGTGCCTTAATTAACCTAGCTGGCGCTTTAAAACTCGGC
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54802703 212 + 123690457 cacatacacacacacgatttcacagaccatttcagggatttctacgctctgaagcccatt-catgcatgaaggctaagaaccgctTCCAAGGAAGGGTAGGTTTGCAAAAC-TGTTTTTACATTTTTACAGCCTTTGTATGCCTTAATT-ACATTTTTACATTTTTACAGCCTTTGTGTGCCTTAATTAACCTGGCTGGCACTTTAAATCTCGGC
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79707544 204 - 134985053 cacacacacacgcacgatttcacagaccatttcagggatttctacgctctgaagcccatt-catgcatgaaggctaagaacccctTCCAAGGAAGAATAGGTTTGCAAAAC-TATTTTTACATTTTTACAGCCTTTGTATGTTTTAATT---------ACATTTTTACAGACTTTGTATGCCTTAATTAACCTCGATGGCTCTTTAAAACTCGGC
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80807408 204 - 137757926 cacacacacgcgcacgatttcacagaccatttcagggatttctacgctctgaagcccatt-catgcatgaaggctaagaacccctTCCAAGGAAGGATAGGTTTGCAAAAC-TATTTTTACATTTTTACAGCCTTTGTATGTTTTAATT---------ACATTTTTACAGACTTTGTATGCCTTAATTAACCTCGATGGCTCTTTAAAACTCGGC
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78760552 204 - 132286798 cacacacacacgcacgatTTCACAGACCATTTCAGGGATTTCTACGCTCTGAAGCCCATT-CATGCATGAAGGCTAAGAACCCCTTCCAAGGAAGGACAGGTTTGCAaaac-tgtttttacatttttacagtcTCTGTAtgctttaatt---------acatttttacagACTTTGTATACCTTAATTAACCTCGCTGGCTCTTTAAAACTCGGC
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74683796 205 - 128539186 cacacacacacgcacgatttcacagaccatttcagggatttctacgctctgaagcccattacatgcatgaaggctaagaacccctTCCAAGGAAGGACAGGTTTGCAAAAC-TGTTTTTACATTTTTACAGCCTCTGTATGCTTTAATT---------ACATTTTTACAGACTTTGTATGCCTTAATTAACCTCGCTGGCTCTTTAAAACTCGGC
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77494910 169 - 124281992 catacacacacacacaaattcacagaccatttcagggatttctatgctctg-agcccatt-catgcatgaaggctaagaacccttTCCAAGGAAAGGTAGGTTTGCAAAACTTGTTTTTGCACTGC--CAGCC---GTAGGTATTTATT---------------------------------------AACCTGGCTGGCTCTTTAAAACTCTGC
i calJac3.chr9              C 0 C 0
e mm10.chr10                126900689 164 + 130694993 I
e canFam3.chr10               1983160   0 +  69331447 I

a score=796609.000000
s hg38.chr12_GL383550v2_alt    159710 255 +    169178 CTCACCCTTACCCTGAAGTCACAGTGTGGCTGCATAACTTATGTAAGAAATCGGAGGATCTGTCACAACAGTGAGTGACAAAAAAGGGCAGACAAATTCATTCCACAAGCCAAAAACAGCGACGAAAAGGGTCTCAGCGCCACCTCTAGTGGGGAAACTGAGCCTCAGGCTCCCAACCCAGCCCCCATGATGCCCAGTCTGTCTAGACTCTGTGCTGAACCTGA---------------------------AGCCCCTGGCCAGGTGTTGC----CCAGGCCCTTC
s panTro4.chr12              31397785 255 + 134246214 CTCACCCTTACCCTGAAGTCACAGTGTGGCTGCATAACTTATGTAAGAAATCGGAGGATCTGTCACAACAGTGAGTGACAGAAAAGGGCAGACAAATTCATTCCACAAGCCAAAAACAGCGACGAAAAGGGTCTCAGCGCCACCTCTAGTGGGGAAACTGAGCCTCAGGCTCCCAACCCAGCCCCCATGATGCCTAGTCTGTCTAGACTCTGTGCTGAACCTGA---------------------------AGCCCCTGGCCAGGTGTTGC----CCAGGCCCTTC
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78602908 282 - 136387465 CTCACCCTTACCCTGAAGTCACAATGTGGCTGCATAACTTATGTAAGAAATCGGAGGATCTGTCACAACAGTGAGTGACAAAAAAGGGCAGACAAATTCATTCCACAAGCCAAAAACAGCGACGAAAAGGGTCTCAGCGCCACCTCTAGTGGAGAAACTGAGCCCCAAGCTCCCAACCCAGCCTCCATGATGCCCAGTTTGCCTAGACTTTGTGCTGAACCTGGTTCATTCAGCCCTGAGGCTGAACCTGCAGCCCCCGGCCAGGTGTTGC----CCAGGCCCTTC
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54802915 275 + 123690457 CTCACCCTTACCCTGAAGT--CAGTGTGGCTGCATAACTTATGTAAGAAATCGGAGGATCTGTCACAACAGTGAGTGACAAAAAAGGGCAGACAAATTCATTCCACAAGCCAAAAACAGCGACGAAAGGGGTCTCAGCGCCACCTCTAGTGGGGAAACTGAGCCCCAGGCTCCCAACCCAGCCCCGATGATGCCCAGTATGCCTAGACTCTGTGCTGAACCTGGTTCATTCAGCCCTGAGGCTGAACCTGCAGCCCCTGGCCAGGTGTTGC----CCAGTC-----
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79707748 282 - 134985053 CTCACCCTTACCCTGAAGTCACAATGTGGCTGCATAACTTATGTAAGAAATCGGAGGATGTGTCACAACAGTGAGTGACAAAAAAGGGCAGACAAACTCATTCCCCAAGCCAAAAACAGCGACGAAAAGGGTCTCAGCGCCTCCTCTGGTGGGAAAACTGAGCCCCAGGCGCCCAACCCAGCCCCCATGATGCCCTGTCTGCCTACACTCTGTGCTGAACCTGGTTCACTCAGCCTCGAGGCTGAAACTGCAGCCGCTGGCCAGGTGTTAC----CCAGGCCCTTC
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80807612 282 - 137757926 CTCACCCTTACCCTGAAGTCACAATGTGGCTGCATAACTTATGTAAGAAATCGGAGGATGTGTCACAACAGTGAGTGACAAAAAAGGGCAGACAAACTCATTCCCCAAGCCAAAAACAGCGACGAAAAGGGTCTCAGCGCCTCCTCTGGTGGGAAAACTGAGCCCCAGGCGCCCAACCCAGCCCCCATGATGCCCTGTCTGCCTACACTCTGTGCTGAACCTGGTTCACTCAGCCCCGAGGCTGAAACTGCAGCCGCTGGCCAGGTGTTGC----CCAGGCCCTTC
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78760756 282 - 132286798 CTCACCCTTACCCTGAAGTCACAATGTGGCTGCATAACTTATGTAAGAAATCGGAGGATGTGTCACAACAGTGAATGACAAAAAAGGGCAGACAAACTCATTCCCCAAGCCAAAAACAGCGACGAAAAGGGTCTCAGCGCCTCCTCTGGTGGGAAAACTGAGCCCCAGGCGCCCAACCAAGCCCCCATGATGCCCTATCTGCCTACACTCTGTGCTGAACCTGGTTCACTCAGCCCCGAGGCTGAAACTGCAGCCGCTGGCCAGGTGTTGC----CCAGGCCCTTC
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74684001 282 - 128539186 CTCACCCTTACCCTGAAGTCACAATGTGGCTGCATAACTTATGTAAGAAATCGGAAGATGTGTCACAACAGTGAGTGACAAAAAAGGGCAGACAAACTCATTCCCCAAGCCAAAAACAGCGACGAAAAGGGTCTCAGCGCCTCCTCTGTTGGGAAAACTGAGCCCCAGGCGCCCAACCCAGCCCCCATGATGCCCTATCTGCCTAGACTCTGTGCTGAAACTGGTTCACTCAGCCCCGAGGCTGAAACTGCAGCTGCCGGCCAGGTGTTGC----CCAGGCCCTTC
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77495079 270 - 124281992 CTCACCCTTACTCTGAAATCACAGTGTAGCTGCATAACTTATGTAAGAAATCGGATGATCCGTCAGAACAGTGGGTGACAGAAAAGAGCAGACAAACTCTTTCCACAAGCCAAAAACAGCGATGAAAAGAATCTCAGCGCCTCCTCTAGTGGGGAAACTGAGGCCCAGGCTCCC------------ATGATGCCCAGTCTGCCTAGAGTCTGTGCTGAACCCGGCTCATTCAGCCCTGAGGCTGAAGCTGCAGCCTCTGGCCAAGTGTCGC----CCAGGCCTCTC
i calJac3.chr9              C 0 C 0
s mm10.chr10                126900853 192 + 130694993 CTCACCTGCACCCTAGAGC--CCGTGCCGCTGCAAAACTTACATAAGAAACTGGTGAGT---------------GTGACCCAGGAGGGCAGAC----TCCCAGCCCAGGCCTTCAGAAGCG------------------------CGAGTGGGG---CGGAGGCCCACGCCCCC--TCCCGCCC-------------------------------------------ACGCAGCCCTAGGGCTGCAG-TGCAGTCCGGGATCAGTGGGGGCACGTCCGGGCCCTTC
i mm10.chr10                I 164 C 0
e canFam3.chr10               1983160   0 +  69331447 I

a score=1087539.000000
s hg38.chr12_GL383550v2_alt    159965 273 +    169178 CTCGCCCACCCGGTCTCAGACCCATTCTGTGGAACCACAGCCTCCAGGTCATGGCTCCTACTTGTCTCCAGCGTCTTCAGGAGCCTAAGCTGGCACTTCTGGTTGCTGGTGAAGAAGCTGGAGAAGAACCCTTGCTGGGGATTCCCCTGGGCCAGACGCTCGGGGAAGACCTGGCAAGAGACGTGTTGCTGCTGCAGCTGCTCCCCTGCCGCGGGGCCCCGCCGGCGCTCGTCCGGAGCTCCCGCCATGCCTCCCGCAGACCTCGCCGCTGCT
s panTro4.chr12              31398040 273 + 134246214 CTCGCCCACCCGGTCTCAGACCCATTCTGCCGAACCCCAGCCTCCAGGTCATGGCTCCTACTTGTCTCCAGCGTCTTCAGGAGCCTAAGCTGGCACTTCTGGCTGCTGGTGAAGAAGCTGGAGAAGAACCCTTGCTGGAGATTCCCCTGGGCCAGACGCTCGGGGAAGACCTGGCAAGAGACGTGTTGCTGCTGCAGCTGCTCCCCTgccgcggggccccgcccgcgcTCGTCCGGAGCTCCCGCCATGCCTCCCGCAGACCTCGCCGCTGCT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78603190 271 - 136387465 CTCGCCCACCCGGTCTCAGACCCATTCTGCCGAACCCCAGCCTCCAGGTCATGGCTCCTACTTGTCTCCAGCGTCTTCAGGAGCCTAAGCTGGCACTTCTGGTTGCTGGTGAAGAAGCTGGAGAAGAACCCTTGCTGGGGATTCCCCTGGGCCAGACGCTCGGGGAAGACCTGGC-AGAGACGTGTTGCTGCTGCAGCTGCTCCCCTGCCGCGGGG-CCCGCCCGCGCTCGTCCTGAGCTCCCGCCATGCCGCCCGCAGACCTCGCCGCTGCT
i ponAbe2.chr12             C 0 M 378
s nomLeu3.chr11              54803190 269 + 123690457 ----CCCACCCGGTCTCAGACCCATTCTGCCGAACCCCAGCCTCCAGGTCATAGCTCCTACTTGTCTCCAGCGTCTTCAGGAGCCTAAGCTGGCACTTCTGGTTGCTGGTGAAGAAGCTGAAGAAGAACCCTTGCTGGGGATTCCCCTGGGCCAGACGCTCGGGGAAGACCTGGCAAGAGACGTGTTGCTGCTGCAGCTGCTCCCCTGCCGCGGGGCCCCGCCCGCGCTCGTCCGGAGCTCCCGCCATACCGCCCGCAGACCTCGCCGCTGCT
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79708030 273 - 134985053 CTCGCCCACCCGGTCTCAGACCCATTCGGCCGAACCCCAGCCTCCAGGTCATGGCTCCTACTTGTCTCCAGCGTCTTCAGGAGCCTAAGCTGGCACTTCTGGTTGCTGGTGAAGAAGCTGGAGAAGAACCCTTGCTGGGGATTCCCCTGGGCCACACGCTCGGGGAAGACCTGGCAAGAGACGTGTTGCTGCTGCAGCTGCTCCCCTGCCGCGGGGCCCCTCCCGCGCTCGTACGGAGCTCCCGCCATGCTGCCCGCAGACCTCGCCGCTGCT
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80807894 273 - 137757926 CTCGCCCACCCGGTCTCAGACCCATTCGGCCGAACCCCAGCCTCCAGGTCATGGCTCCTACTTGTCTCCAGCGTCTTCAGGAGCCTAAGCTGGCACTTCTGGTTGCTGGTGAAGAAGCTGGAGAAGAACCCTTGCTGGGGATTCCCCTGGGCCACACGCTCGGGGAAGACCTGGCAAGAGACGTGTTGCTGCTGCAGCTGCTCCCCTGCCGCGGGGCCCCTCCCGCGCTCGTACGGAGCTCCCGCCATGCTGCCCGCAGACCTCGCCGCTGCT
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78761038 273 - 132286798 CTCGCCCACCCGGTCTCAAACCCATTCGGCCGAACCCCAGCCTCCAGGTCATGGCTCCTACTTGTCTCCAGCGTCTTCAGGAGCCTAAGCTGGCACTTCTGGTTGCTGGTGAAGAAGCTGGAGAAGAACCCTTGCTGGGGATTCCCCTGGGCCACACGCTCGGGGAAGACCTGGCAAGAGACGTGttgctgctgcagctgctcccCTGCCGCGGGGCCCCTCCCGCGCTCGTACGGAGCTCCCGCCATGCTGCCCGCAGACCTCGCCGCTGCT
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74684283 273 - 128539186 CTCGCCCACCCGGTCTCAGACCCATTCGGCCGAACCCCAGCCTCCAGGTCATGGCTCCTACTTGTCTCCAGCGTCTTCAGGAGCCTAAGCTGGCACTTCTGGTTGCTGGTGAAGAAGCTGGAGAAGAACCCTTGCTGGGGATTCCCCTGGGCCACACGCTCGGGGAAGACCTGGCAAGAGACGTGTTGCTGCTGCAGCTGCTCCCCTGCCGCGGGGCCCCTCCCGCGCTCGTACGGAGCTCCCGCCATGCTGCCCGCAGACCTCGCCGCTGCT
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77495349 273 - 124281992 CTCGCCCACCCGGTCTCATACCCACTCTGCCGAACACCACTCTCTAGGTCATGGCTCATACTTGTTTCCAGCGTCCTCAGGAGCCTAAGCTGGCACTTCTCGTTGCTGGTGAAGAAGCTGGAAAGGAACCCTTGCTGGGGATTCCCCTGGGCCAGACGCGTAGGGAAGACCTGGCAAGAGACGTGTTGCTGCTGCAGCTGCTCCCCTGCCGCGGAGCCTGGCCGGCGCACATCCGGAGCTCCCGCCATGCCGCCAGCAGACCGCGCTGCTGCT
i calJac3.chr9              C 0 C 0
s mm10.chr10                126901045 260 + 130694993 CTCACCCCCCGGGTCCTGTGCCACCCCG-----ACCCCAGCCTCCAGGTCGCGGCTCTTACTGGTATCCAGCGTCTTCTGGAGCATGAGCGGACAACTCTGGTCCCGGGTGAAGAGGCTGGAGAGGAAGCCCTGCTGGGGCTTCCCGTGGGCCGGCGGCTCAGGCGAGCCCTGGCCAGAGTCGGGTCGCTGCAGCAGTGGCTCGCCAGCCGCAGGGCCGAGCTCGCCGCCGCCCGGAGCTCCTGCCATGAGGCCCGCAAGCCTCC--------
i mm10.chr10                C 0 C 0
s canFam3.chr10              67349534 252 -  69331447 cccgcccgcccgccctccggcccgacccg-gggcccaccgccgccg---ccccgcTCCTACTTGTCTCCAGCGTCTTCAGGAGCAGCCGCTGGCACCCCTGGTCGTTGGAGAAGACGCTGGAGAGGAGCCCTTGCCCGGACCCCCCCTGGGCCCGCCGCTCGGGGAACACCTGGCACGCGACGCgctgctgctgctgctgct--gctgctgctgggcccccgccgcg-------------cccgccatgccgcccg--ggcctggccgctctg
i canFam3.chr10             I 1428 C 0

a score=242712.000000
s hg38.chr12_GL383550v2_alt    160238 114 +    169178 TCCTCCTGGCTCAGGCGGCCAGAGCGAGACT-GGGAAAGGTAACCTCCCTCCCGCCAACGCGACCGCCC----AGGCCCTCCCTCCGCAGGGAAGAAGGGCAGCCTGGCTGGGCTGAAG
s panTro4.chr12              31398313  90 + 134246214 TCCTCCTGGCTCGGGCGGCCAGAGCGAGACT-GGGAAAGGTAACCTCCCTCCCGCCAACGCGACCGCCC----AGGCCCTCCCTCCGTAGG------------------------GAAG
i panTro4.chr12             C 0 C 0
s nomLeu3.chr11              54803459 114 + 123690457 TCCTCCTGGCTTGGGCGGCCGGAGCGAGACC-GGGAAAGGTAACCTCCCTCCCGCCAACCCGACCGCCC----AGGCCCTCCCTCCACAGGGAAGAAGGGCAGCCTGGCTGGGCTGAAG
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79708303 114 - 134985053 TCTCTCCGGCTCGGGCGGCCGGAGCGAGACC-GGGAAAGGTAACCTCCCTCCCGCCAACCCGACCGCCC----AGGCCCTCCCTCCGCAGGGAAGAAGGGCAGCCAGGCTGGGCTGAAG
i rheMac3.chr11             C 0 M 264
s macFas5.chr11              80808167 114 - 137757926 TCTCTCCGGCTCGGGCAGCCGGAGCGAGACC-GGGAAAGGTAACCTCCCTCCCGCCAACCCGACCGCCC----AGGCCCTCCCTCCGCAGGGAAGAAGGGCAGCCAGGCTGGGCTGAAG
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78761311 114 - 132286798 TCTCTCCGGCTCGGGCGGCCGGAGCGAGACC-GGGAAAGGTAACCTCCCTCCCGCCAACCCGACCGCCC----AGGCCCTCCCTCCGCAGGGAAGAAGGGCAGCCAGGCTGGGCTGAAG
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74684556 114 - 128539186 TCTCTCCGGCTCGGGCGGCCGGAGCGAGACC-GGGAAAGGTAACCTCCCTCCCGCCAACCCGACCGCCC----AGGCCCTCCCTCCGCAGGGAAGAAGGGCAGCCAGGCTGGGCTGAAC
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77495622 115 - 124281992 TCCTCCAAGCTCGGGCGGCCAGA--GAGACA-GGGAAAGGTAACCTCCCTCCCGCCCCCCCGACCGCCCAGGAAGGCCCTCCTTCCGCAGGGAAGAAGGGCAG-CAGGCTGGGCGGTAA
i calJac3.chr9              C 0 C 0
s mm10.chr10                126901305  58 + 130694993 TCCTGCCCGCTCG--------------ACCT-AGGACAG------CCGCTTCCGCCG-----------C----CGGCGCACGCTCCGCGGGCCA-------------------------
i mm10.chr10                C 0 C 0
s canFam3.chr10              67349786 111 -  69331447 --gcccccgccgcggcggcccgcACCAGCCCTGGGACCGCCAAGCGCCCTCCCGCC--CCCAGCCGCTC----AGGTCCTcccccgcccggcgggccccgccgcAGAGCGCCGCTGAGG
i canFam3.chr10             C 0 C 0
e ponAbe2.chr12              78603461 378 - 136387465 M

a score=62062.000000
s hg38.chr12_GL383550v2_alt    160352 38 +    169178 ACGTTAGGCGGGAGGGGGC-TTTGAACCTgacggggagc
s panTro4.chr12              31398403 38 + 134246214 ACGTTAGGCTGGAGGGGGC-TTTGAACCTGACGGGGAGC
i panTro4.chr12             C 0 C 0
s nomLeu3.chr11              54803573 38 + 123690457 ACGTTAGGCGGGAGTGGGC-TTTGAACCTgacggggaga
i nomLeu3.chr11             C 0 C 0
s macFas5.chr11              80808281 38 - 137757926 ACGTTAGGCGGGAGGGAGC-TTTGAACCAGACCGGGAGC
i macFas5.chr11             C 0 M 491
s papAnu2.chr11              78761425 38 - 132286798 ACGTTAGGCGGGAAGGAGC-TTTGAACCAGACcgggagc
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74684670 38 - 128539186 ACGTTAGGCGGGAGGGAGC-TTTGAACCAGACCGGGAGC
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77495737 39 - 124281992 ACGTTAGGCGGGAGGGGACTTTTGAACCTGACGGGGAAC
i calJac3.chr9              C 0 C 0
s mm10.chr10                126901363 25 + 130694993 -------GCACGAAGGAGA-------CGCGGCGTGCAGC
i mm10.chr10                C 0 C 0
s canFam3.chr10              67349897 38 -  69331447 ACGTTGGGGCCGCGGGGCC-TCGGAGCCCAGCAGCACTc
i canFam3.chr10             C 0 C 0
e rheMac3.chr11              79708417 264 - 134985053 M
e ponAbe2.chr12              78603461 378 - 136387465 M

a score=63479.000000
s hg38.chr12_GL383550v2_alt    160390 59 +    169178 -gcgggaggcggggc--gaga-ggcgaggggcggggcgagaggcga---ggggcggggcgagggat
s panTro4.chr12              31398441 60 + 134246214 -GCGGGAggcggggc--gaga-ggagaggggcggggcgagaggcgag--ggggcggggcgagggat
i panTro4.chr12             C 0 C 0
s nomLeu3.chr11              54803611 59 + 123690457 -gcgggaggcggggc--gaga-ggcgaggggcggggcgagaggcga---ggggcggggcgagaggc
i nomLeu3.chr11             C 0 C 0
s papAnu2.chr11              78761463 59 - 132286798 -acggggcacagggc--gagt-ggcgaggggcggggagaggggcga---ggggcggggagagggga
i papAnu2.chr11             C 0 I 15
s chlSab2.chr11              74684708 59 - 128539186 -ACggggcacagggc--gagg-ggcgaggggcggggagaggggcga---gaggcggggagaggggc
i chlSab2.chr11             C 0 I 14
s calJac3.chr9               77495776 59 - 124281992 -ACGGGGGCAGGAGG--GACT-GGCGAggggcggggcgagggtcgc---agggcggggcagggggc
i calJac3.chr9              C 0 C 0
s mm10.chr10                126901388 41 + 130694993 --TCGTGGGCGGGGCTTGGTA-GGCGTG-------------GTCGG---TGGGCGGGGCT------
i mm10.chr10                C 0 C 0
s canFam3.chr10              67349935 64 -  69331447 ggggaggggcggggc--ggggcggtgcggggaggggcgagcggcggggcggggcggcgcgagacgt
i canFam3.chr10             C 0 C 0
e macFas5.chr11              80808319 491 - 137757926 M
e rheMac3.chr11              79708417 264 - 134985053 M
e ponAbe2.chr12              78603461 378 - 136387465 M

a score=15797.000000
s hg38.chr12_GL383550v2_alt    160449 12 +    169178 gaggggcggggc----
s panTro4.chr12              31398501 12 + 134246214 gaggggcggggc----
i panTro4.chr12             C 0 C 0
s nomLeu3.chr11              54803670 12 + 123690457 gaggggcggggt----
i nomLeu3.chr11             C 0 C 0
s papAnu2.chr11              78761537 12 - 132286798 gaggggcgggga----
i papAnu2.chr11             I 15 C 0
s chlSab2.chr11              74684781 12 - 128539186 gaggagagggga----
i chlSab2.chr11             I 14 C 0
s calJac3.chr9               77495835 12 - 124281992 gcggggcgggga----
i calJac3.chr9              C 0 C 0
s mm10.chr10                126901429 12 + 130694993 GATGGGCGGTGC----
i mm10.chr10                C 0 I 259
s canFam3.chr10              67349999 12 -  69331447 ----ggcggggacggt
i canFam3.chr10             C 0 C 0
e macFas5.chr11              80808319 491 - 137757926 M
e rheMac3.chr11              79708417 264 - 134985053 M
e ponAbe2.chr12              78603461 378 - 136387465 M

a score=30432.000000
s hg38.chr12_GL383550v2_alt    160461 32 +    169178 ga---gggcat------------gg----------ggcggggcgcgggG----CCCGATGC
s panTro4.chr12              31398513 32 + 134246214 ga---gggcat------------gg----------ggcggggcgCGGGG----CCCGATGC
i panTro4.chr12             C 0 C 0
s nomLeu3.chr11              54803682 44 + 123690457 ga---gggcatggggcggggcgagg----------ggcggggcgcgggg----cCCGATGC
i nomLeu3.chr11             C 0 C 0
s macFas5.chr11              80808811 33 - 137757926 GAG--GGGCGG------------GG----------AGAGGGGCGCGGGG----ACAGATGC
i macFas5.chr11             M 491 C 0
s papAnu2.chr11              78761549 33 - 132286798 gag--gggtgg------------gg----------agaggggcgcaggg----cCAGATGC
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74684793 33 - 128539186 gag--gggcgg------------gg----------agaggggcgcgggA----CCAGATGC
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77495847 45 - 124281992 gagaagggcgg------------ggcgATAAACGCGGGGCGGTGCTGGG----CCAGAAGC
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67350011 36 -  69331447 ---cggggcgt------------gg----------cTAGCGGCGGGGGGAGGCCCCGCTAG
i canFam3.chr10             C 0 C 0
e mm10.chr10                126901441 259 + 130694993 I
e rheMac3.chr11              79708417 264 - 134985053 M
e ponAbe2.chr12              78603461 378 - 136387465 M

a score=448805.000000
s hg38.chr12_GL383550v2_alt    160493 197 +    169178 ----TGTTGGGCGGA-GCTGGGTCTTGCGACTTCCCTCAAAGGCTGTAACAACCCGGCTGCCGCGGATTTCGCTGCTGCCCTCCCAGTGTGGGTGACATGTCTTTATAAGCGTTGTTCTG------CAGCTTCCTGCTGCCTGCTGAGCT--CTAAGGGTGTCCCGCCTCCT------------CGCAGACACTCCTTCCTCACCTCGGGGCGAATATTGGC
s panTro4.chr12              31398545 194 + 134246214 ----TGTTGGGCGTA-GCTGGGTCTTGCGACTTCCCTCAAAGGC---AACAACCCGGCTGCCGCGGACTTCGCTGCTGCCCTCCCAGTGTGGGTGACATGTCTTTATAAGCGTTGTTCTG------CAGCTTCCTGCTGCCTGCTGAGCT--CTAAGGGTGTCCCGCCTCCT------------CGCAGACACTCCTTCCTCACCTCGGGGCGAATATTGGC
i panTro4.chr12             C 0 C 0
s nomLeu3.chr11              54803726 195 + 123690457 ----TGTTGGGCGGA-GCTGGGTCTTGCGACTTCCCTCAAAGGC---AACACCACCGCTGCCGCGGGCTTCGCTGCTGCCCTCCCAGTGTGGGTGACATGTCTTTATAAGCGTTGTTCTG------CAGCTTCCTGCTGCCTGCTGAGCTG-CTAAGGGTGTCCCGCCTCCT------------CGCAGACACTCCTTCCTCACCTCGGGGCGAATATTGGC
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79708681 195 - 134985053 ----TGTTGGGCGGA-GCTGCGTCTTGCGACTTCCCTCAAAGGC---AACACCCGGGCTGCCGAGGACTTCGCTGCTGCCCACCCAGTGTGGGTGACAGGCCTTTACAAGCGTTGTTCTG------CCGCTTCCTGCTGCCTGCTGAGCTG-CTAAGGGTGTCCCGCCTCCT------------CGCAGACACTCCTTCCTCACCTCGGGGCAAATATTGGC
i rheMac3.chr11             M 264 C 0
s macFas5.chr11              80808844 195 - 137757926 ----TGTTGGGCGGA-GCTGCGTCTTGCGACTTCCCTCAAAGGC---AACACCCGGGCTGCCGAGGACTTCGCTGCTGCCCACCCAGTGTGGGTGACAGGCCTTTACAAGCGTTGTTCTG------CCGCTTCCTGCTGCCTGCTGAGCTG-CTAAGGGTGTCCCGCCTCCT------------CGCAGACACTCCTTCCTCACCTCGGGGCAAATATTGGC
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78761582 195 - 132286798 ----TGTTGGGCGGA-GCTGGGTCTTGCGACTTCCCTCAAAGGC---AACACCCGGGCTGCCGAGGACTTCGCCGCTGCCTACCCAGTGTGGGTGACAGGCCTTTACAAGCGTTGTTCTG------CCGCTTCCTGCTGCCTGCTGAGCTG-CTAAGGGTGTCCCGCCTCCT------------CGCAGACACTCCTTCCTCACCTCGGGGCAAATATTGGC
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74684826 195 - 128539186 ----TGTTGGGCGGA-GCTGGGTCTTGCGACTTCCCTCAAAGGC---AACACCCAGGCTGCCGAGGACTTCGCTGCTGCCCACCCAGTGTGGGTGACAGGCCTTTACAAGCGTTGTTCTG------CCGCTTCCTGCTGCCTGCTGAGCTG-CTAAGGGTGTCCCGCCTCCT------------CGCAGACACTCCTTCCTCACCTCGGGGCAAATATTGGC
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77495892 183 - 124281992 ----CGGCGCTCGGA-GCTGGGTCCTGCGACTTCCCTTAAAGGC---AACACCCGGGCTGCAGCGGTCTTCGCTACTGCCCACCCAGTGTGGGTGACAG------------GTTGTTCTG------CAGCCTCCCGCTGCCTGTTGAGCTG-CTAAGGGTGTCCTGACTCCT------------CGCAGACACTCCTTCCTCACTTCGGGGCGAATACTGGC
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67350047 210 -  69331447 AACAGGTCGCGTGTCTGCTGA--TCTGCGG--Tccgtcgctgtt---gccgccgctgttgccgccgctgtagccgccgccC-CTCAGCGTGGCGGTCCGGACCTCGCAAG-GTGGCTCGGGCTCGTCACGGGCCCTCCGCCCTCAGTACTGTCCAGGAGCCCCTCGCGCCCTGACGATCTCGGGCGCCCCCACCCCTTTTCCACCTGCAGGCCGA---TGGC
i canFam3.chr10             C 0 C 0
e mm10.chr10                126901441 259 + 130694993 I
e ponAbe2.chr12              78603461 378 - 136387465 M

a score=8595.000000
s hg38.chr12_GL383550v2_alt    160690 2 +    169178 CA
s panTro4.chr12              31398739 2 + 134246214 CA
i panTro4.chr12             C 0 C 0
s nomLeu3.chr11              54803921 2 + 123690457 CA
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79708876 2 - 134985053 CA
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80809039 2 - 137757926 CA
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78761777 2 - 132286798 CA
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74685021 2 - 128539186 CA
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77496075 2 - 124281992 CA
i calJac3.chr9              C 0 C 0
s mm10.chr10                126901700 2 + 130694993 ca
i mm10.chr10                I 259 C 0
s canFam3.chr10              67350257 2 -  69331447 CA
i canFam3.chr10             C 0 I 254
e ponAbe2.chr12              78603461 378 - 136387465 M

a score=74547.000000
s hg38.chr12_GL383550v2_alt    160692 31 +    169178 CTAACTGCTCTTGTGCCGCCGAAGGTCTCGG
s panTro4.chr12              31398741 31 + 134246214 CTAACTGCTCTTGTGCCGCCGAAGGTCTCGG
i panTro4.chr12             C 0 C 0
s nomLeu3.chr11              54803923 31 + 123690457 CTAAGTGCTCTTGTGCCGCCGAAGGTCTCGG
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79708878 31 - 134985053 CTAAGTGCTCTTGTGCCGCCGAAGGTCTCGG
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80809041 31 - 137757926 CTAAGTGCTCTTGTGCCGCCGAAGGTCTCGG
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78761779 31 - 132286798 CTAAGTGCTCTTGTGCCGCGGAAGGTCTCGG
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74685023 31 - 128539186 CTAAGTGCTCTTGTGCCGCCGAAGATCTTGG
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77496077 31 - 124281992 CTAAGTGTTCTTCAGCTGCTGAAGGCATCGG
i calJac3.chr9              C 0 C 0
s mm10.chr10                126901702 25 + 130694993 ctgactgctcgt------ccaaaggtcatga
i mm10.chr10                C 0 I 300
e canFam3.chr10              67350259 254 -  69331447 I
e ponAbe2.chr12              78603461 378 - 136387465 M

a score=277018.000000
s hg38.chr12_GL383550v2_alt    160723 121 +    169178 CCATCCTCCCACTCCCTGCCTTCTTCCGGGGCAAGCCAGTTGTCATTTCTGGCCCGCCACTTTCCCGACCCCTGCCATCCCTCAGATCCACTCTGCCCAAAGATGCCTCTGGCCATATTGA
s panTro4.chr12              31398772 121 + 134246214 CCGTCCTCCCACTCCCTGCCTTCTTCCGGGGCAAGCCAGTTGTCATTTCTGGCCCGCCACTTTCCCGACCCCTGCCATCCCTCAGATCCACTCTGCCCAAAGATGCCTCTGGCCATATTGA
i panTro4.chr12             C 0 C 0
s nomLeu3.chr11              54803954 121 + 123690457 CCATCCTCCCACTCCCTGCCTTCTTCCGGGGCAAACCAGTTGTCATCTCTAGCCCGCCACTTTCCCGACCCCTGCCACCCCTCAGATCCACTCTGCCCAAAGATGCCTCTGGCCTTATTAA
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79708909 121 - 134985053 CCATCCTGCCACTCACGGCCTTCTTCAGGGACAGGCTAGTTGTCATCGCTGGCCCGCCACTTTCCCGACCCCTGCCATCCCTCAGATCCACTCAGCCCAAGGATGTCTCAGGCCATATTGA
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80809072 121 - 137757926 CCATCCTGCCACTCCCGGCCTTCTTCAGGGACAGGCTAGTTGTCATCGCTGGCCCGCCACTTTCCCGACCCCTGCCATCCCTCAGATCCACTCAGCCCAAGGATGTCTCAGGCCATATTGA
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78761810 121 - 132286798 CCATCCTGCCACTCCCGGCTTTCTTCAGGGACAGGCTAGTTGTCATCGCTGGCCCGCCACTTTCCTGACCCCTGCCATCCCTCAGATCCACTCAGCCCAAGGATGCCTCAGGCCATATTGA
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74685054 121 - 128539186 CCATCCTGCCACTCCCGGCCTTCTTCAGGGACAGGCTAGTTGTCATCGCTGGCCCGCCACTTTCCCGACCCCTACCATCCCTCAGATCCACTCAGCCCAAGGATGCCTCAGGCCATATTGA
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77496108 120 - 124281992 CCATCCTCCCACTCCCTGCCTTCTTCACGGGCAGGCCAGTTGTCATCTCTGGCCC-CCACTTTCCGGACCCCTGCCATCCCTCAGATTCACTTTGCCCAAGGATGCCTCAGGCCATATTGA
i calJac3.chr9              C 0 I 284
e mm10.chr10                126901727 300 + 130694993 I
e canFam3.chr10              67350259 254 -  69331447 I
e ponAbe2.chr12              78603461 378 - 136387465 M

a score=6398.000000
s hg38.chr12_GL383550v2_alt    160844 3 +    169178 AAG
s panTro4.chr12              31398893 3 + 134246214 AAG
i panTro4.chr12             C 0 C 0
s nomLeu3.chr11              54804075 3 + 123690457 ATG
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79709030 3 - 134985053 AAG
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80809193 3 - 137757926 AAG
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78761931 3 - 132286798 AAG
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74685175 3 - 128539186 AAG
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77496512 3 - 124281992 AAG
i calJac3.chr9              I 284 C 0
e mm10.chr10                126901727 300 + 130694993 I
e canFam3.chr10              67350259 254 -  69331447 I
e ponAbe2.chr12              78603461 378 - 136387465 M

a score=1757.000000
s hg38.chr12_GL383550v2_alt    160847 1 +    169178 C
s panTro4.chr12              31398896 1 + 134246214 C
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78603839 1 - 136387465 C
i ponAbe2.chr12             M 378 C 0
s nomLeu3.chr11              54804078 1 + 123690457 T
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79709033 1 - 134985053 C
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80809196 1 - 137757926 C
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78761934 1 - 132286798 C
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74685178 1 - 128539186 C
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77496515 1 - 124281992 T
i calJac3.chr9              C 0 C 0
e mm10.chr10                126901727 300 + 130694993 I
e canFam3.chr10              67350259 254 -  69331447 I

a score=617110.000000
s hg38.chr12_GL383550v2_alt    160848 214 +    169178 AGTGTTTTTCAGAAAC-GTTTTAAAACTATAAAGAATGACTAGTCACATCAAAATCCTCAAAATGTAGGAACCAACTACATTTTTTCTTCCCA-CCTGTACCCATTCGTTTACCCTACTCTTCTGCCCCACCCCC----CACCAATAACTCCCTGATAACAAAGCGCACCCTGTTTACTTCTACCTCTCAGCCTTAACT----------------------------------------------------------------------------------------------------CATACTGTCATTTCCATCTTT
s panTro4.chr12              31398897 214 + 134246214 AGTGTTTTTCAGAAAC-GTTTTAAAACTATAAAGAATGACTAGTCACATAAAAATCCTCAAAATGTAGGAACCAACTACATTTTTTCTTCCCA-TCTGTACCCATTCGCTTACCCTACTCTTCTGCCCCACCCCC----CACCAATAACTCCCTGATAACAAAGCGCACCCTGTTTACTTCTACCTCTCAGCCTTAACT----------------------------------------------------------------------------------------------------CATACTGTCATTTCCATCTTT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78603840 214 - 136387465 AGTGGTTTTCAGAAAC-GTTTTAAAACTATAAAGAATGACCAGTCACATCAAAATCCTCAAAATGTAGGAACCAACTACATTTTTTCTTTTCA-TCGGTACCCATTCGCTTACCCTACTCTTCTGCCCCACCCCC----CACCAATAACTCCCCGATAACAAAGCGCACCCTGTTTACGTCTACCTCTCAGCCTTAACT----------------------------------------------------------------------------------------------------CATACTGTCATTTCCATCTTT
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54804079 217 + 123690457 AGTGTTTTTCAGAAAC-GTTTTTAAACTATAAAGAATGACTAGTCACATCAAAATCCTCAAAATATAGG-ACCAACTACATTTTTTCTTCCCA-TCTGTACCCATTCGTTTACCCTACTTTTCTGCCCCCTCCCCCCCACACCAATAACTCCCTGATAACAAAGCGCACCCGGTTTACTTCTACCTCTCAGCCTTAACT----------------------------------------------------------------------------------------------------CATACTGTTATTTCCATCTTT
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79709034 213 - 134985053 AGTATTTTTCAGAAAC-ATTTTAAAACTATAAAGAGTGACGAGTCACATCAAAATCCTCAAAATGTAGG-ATCAACGACATTTTTTCTTCCCA-TCTGTACCCATTCACTTACCCTACTCTTCTGCACTCCCCCC----GACCAATAACTCCCTGATAACAAAGCGCACCGTGTTTACTTCTACCTCTCAGCCTTAACT----------------------------------------------------------------------------------------------------CACATTGTTATTTCCATCTTT
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80809197 213 - 137757926 AGTATTTTTCAGAAAC-ATTTTAAAACTATAAAGAGTGACGAGTCACATCAAAATCCTCAAAATGTAGG-ATCAATGACATTTTTTCTTCCCA-TCTGTACCCATTCACTTACCCTACTCTTCTGCACTCCCCCC----GACCAATAACTCCCTGATAACAAAGCGCACCGTGTTTACTTCTACCTCTCAGCCTTAACT----------------------------------------------------------------------------------------------------CACATTGTTATTTCCATCTTT
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78761935 212 - 132286798 AGtatttttcagaaac-atttttaaactataaagagTAACGAGTCACATCAAAATCCTCAAAATGTAGG-ATCAACGACA-TTTTTCTTCCCA-TCTGTACCCATTCACTTACCCTACTCTTCTGCACTCCCGCC----GACCAATAACTCCCTGATAACAAAGCGCACCGTGTTTACGTCTACCTCTCAGCCTTAACT----------------------------------------------------------------------------------------------------CACAttgttatttccatcttt
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74685179 213 - 128539186 AGTATTTTTCAGAAAC-ATTTTTAAACTATAAAGAGTGACGAGTCACATCAAAATCCTCAAAATGTAGG-ATCAACGACATTTTTTCTTCCCT-TCTGTACCCATTCACTTACCCTACTCTTCTGCACTCCTCCC----GACCAATAACTCCCTGATAACAAAGCGCACCGTGTTTACTTCTACCTCTCAGCCTTAACT----------------------------------------------------------------------------------------------------CACATTGTTATTTCCATCTTT
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77496516 307 - 124281992 AGTGTTTTTCAGAAAC-GTTTGAAAACTGTAAAGAATGACAAGTCACATCAAAATCCTCAAAATGTAGG-ACCAATTGTATTTTTTCTGCCCA-TCTGTACCCATTCACTTACCCTACTCTTCTGC----CACCC----CA--AATAACTCACTAATAACAAAGTGCACCCTGTTTGTTTCCACATCTCAGCTTTAACTGTTATTTgttagagaccagcctgagcaatatagcaaaacctccatctctaaaaaaattaaaaagttaaccacacatgatgatgcatgccagtagtATAACCATACTGTTATTTCCATCTTT
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67350513 194 -  69331447 tgtgactatcataaataaatttaaaaatttaaaaaaaaaaaA--------AAAAAACTCCAAATGTGAGACCCAACTACTTTTTTCCTGCCTGCCCTGGGCCCGCTGGCCCATCCTACTCTCTTGC----CACCC----CA--AGTAACTTTCTGCTAACAAAGTACAACCAGTTTACTTCTAACTCCAACCCTTAACT----------------------------------------------------------------------------------------------------CGC--------TACCATCTTT
i canFam3.chr10             I 254 C 0
e mm10.chr10                126901727 300 + 130694993 I

a score=169986.000000
s hg38.chr12_GL383550v2_alt    161062 46 +    169178 AAGCTCCTTGCCTCAGCCCCTATGATTGGGGCCCAGGTCAAATCTG
s panTro4.chr12              31399111 46 + 134246214 AAGCTCCTTGCCTCAGCCCCTATGATTGGGGCCCAGGTCAAATCTG
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78604054 46 - 136387465 AAGCTCCCTGCCTCAGCCCCTATGATTGGGGCCCAAGTCAAATCTG
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54804296 46 + 123690457 AAGCTCCTTGCCTCAGCCCCTATGATTGGAGCCCAGGTCAAATCTG
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79709247 46 - 134985053 AAGCTCCTTGCCTCAGCCCCTATTACTGGGGCCCAGGTCAAATCTG
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80809410 46 - 137757926 AAGCTCCTTGCCTCAGCCCCTATTATTGGGGCCCAGGTCAAATCTG
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78762147 46 - 132286798 aaGCTCCTTGCCTCAGCCCCTATTATTGGGGCCCAGGTCAAATCTG
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74685392 46 - 128539186 AAGCTCCTTGCCTCAGCCCCTATTATTGGGGCCCAGGTCAAATCTA
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77496823 46 - 124281992 AAACCCCTTTCCTCAGCCTCTATGTCGGGGGCCCAGGTCAAATCTG
i calJac3.chr9              C 0 I 1174
s mm10.chr10                126902027 35 + 130694993 aAGGCTTTTTCCTCAGTTCCCATAATCAGAGTCCA-----------
i mm10.chr10                I 300 C 0
s canFam3.chr10              67350707 46 -  69331447 AAGCCCCTTTCCTCAGTCCTTATGATCCAGGTCCTGATCAAGTCTA
i canFam3.chr10             C 0 C 0

a score=157414.000000
s hg38.chr12_GL383550v2_alt    161108  44 +    169178 CCTACTCCACAGGGCATTCCCAGATACCTTAATCAAAATTA---------------------------------------------------------ATG
s panTro4.chr12              31399157  44 + 134246214 CCTACTCCACAGGGCATTCCCAGATACCTTAATCAAAATTA---------------------------------------------------------ATG
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78604100  44 - 136387465 CCTACTCCACAGGGCATTCCCAGATACCTTAATCAAAATTA---------------------------------------------------------ATG
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54804342  44 + 123690457 CCTACTCCACAGGGCATTCCCAGATACCTTAATCAAAATTA---------------------------------------------------------ATG
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79709293  44 - 134985053 CCTACTCCACAGGGCATTCCCAGATACCTTAATCAAAATTA---------------------------------------------------------ATG
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80809456  44 - 137757926 CCTACTCCACAGGGCATTCCCAGATACCTTAATCAAAATTA---------------------------------------------------------ATG
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78762193  44 - 132286798 CCTACTCCACAGGGCATTCCCAGATACCTTAATCAAAATCA---------------------------------------------------------ATG
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74685438  44 - 128539186 CCTACTCCACAGGGCATTCCCAGATACCTTAATCAAAATTA---------------------------------------------------------ATG
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77498043  44 - 124281992 CCTACTCCACAGGGCATTCCCAAATATCTTCATCACAATTA---------------------------------------------------------ATG
i calJac3.chr9              I 1174 C 0
s mm10.chr10                126902062  25 + 130694993 -------------------CCAGCACACTTACTCAAAATTA---------------------------------------------------------ATG
i mm10.chr10                C 0 C 0
s canFam3.chr10              67350753 101 -  69331447 CCTACCCCAAAGGGCATTGGCAGACACCTTAATCAAAATTATTCTCTCCTgggacgcctgggtcagcggtcgaccgtctgacgcctttggctcagggcatg
i canFam3.chr10             C 0 I 121

a score=394269.000000
s hg38.chr12_GL383550v2_alt    161152 102 +    169178 TCTCCTGATCTCCCAATGTACAAAGCACTTTGTACCTGTTAATCATTTTCATCGTAGCCTGCCAGGTTTTATCCAATT------------TGTGTGTTTCTCTTTTCCTACTAA
s panTro4.chr12              31399201 102 + 134246214 TCTCCTGATCTCCCAATGTACAAAGCACTTTGTACCTGTTAATCATTTTCATCGTAGCCTGCCAGGTTTTATCCAATT------------TGTGTGTTTCTCTTTTCCTACTAA
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78604144 102 - 136387465 TCTCCTGATCTCCCAATGTACAAAGTACTTTGTACCTGTTAATCATTTTCATCGTAGCCTGCCAGGTTTTATCCAATT------------TGTGTGTTTCTCTTTTCCTACTAA
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54804386 102 + 123690457 TCTCCTGATCTCCCAATGTACAGAGTACTTAGTACCTGTTAATCATTTTCATCGTAGCCTGCCAGGTTTTATCCAATT------------TGTGTGTTTCTCTTTTCCTACTAA
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79709337 100 - 134985053 TCTCCTGATCTCCCAATGTACAAAGTACTTTATACCTGTTAATCATTTTCATCGTGGCCTGCCAGGTTTTATCCAATT--------------TGTGTTTCTCTTTTCCTACTAA
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80809500 100 - 137757926 TCTCCTGATCTCCCAATGTACAAAGTACTTTATACCTGTTAATCATTTTCATCGTGGCCTGCCAGGTTTTATCCAATT--------------TGTGTTTCTCTTTTCCTACTAA
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78762237 100 - 132286798 TCTCCTGATCTCCCAATGTACAAAGTACTTTATACCTGTTAATCATTTTCATCGTGGCCTGCCAGGTTTTATccaatt--------------tgtgtttctcttttcctaCTAA
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74685482 100 - 128539186 TCTCCTGATCTCCCAATGTACAAAGTACTTTATACCTGTTAATCATTTTCATCGTGGCCTGCCAGGTTTTATCCAATT--------------TGTGTTTCTCTTTTCCTACTAA
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77498087 102 - 124281992 TCTCCTGATCTCCCAGTGTACAAAGTACTTTGTACCTGTTAATCGTTTTCATCATAGCCTGCCAGGTTTTATCCAATA------------TGTGTGTTTCTCTTTTCCTACGAA
i calJac3.chr9              C 0 C 0
s mm10.chr10                126902087 110 + 130694993 TTGCCAGATCTGCA---GTTTAAGGCACTTTGTCCGTGTTAGT-GCTCTCATGACAGACTTCCAGCTTTTACGTAgtgtgtgtgtgtgtgtgtgtgtgtTTCTTTCCTCACTAA
i mm10.chr10                C 0 C 0
s canFam3.chr10              67350975  99 -  69331447 TCTCCTGATCTCCAAATGTACAAAGCATTTTACATCTGTTA-TCATTCTCATCACAGCCACCCAGGTTTTAACTAATT--------------TGTGTTTCTCTTTTGCCACtaa
i canFam3.chr10             I 121 I 162

a score=232376.000000
s hg38.chr12_GL383550v2_alt    161254 60 +    169178 Attattccactcagctcacacatttattcagcacctactatgatgggccaggcaaggtgt
s panTro4.chr12              31399303 60 + 134246214 ATTATTCCACTCAGCTCACACATTTATTCAGCACCTACTATGATGGGCCAGGCAAGGTGT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78604246 60 - 136387465 ATTATTCcactcagttcacacatttattcagcacctactatgatgggccaggcaaggtgt
i ponAbe2.chr12             C 0 I 1164
s nomLeu3.chr11              54804488 60 + 123690457 ATTATTCCACTCAGCTcacacatttattcagcacctactatgatgggccaggcaaggtgt
i nomLeu3.chr11             C 0 I 1
s rheMac3.chr11              79709437 58 - 134985053 ATTATTCCACTCAGCTcacacatttattcagcacctacta--atgggtcaggcaaggtgt
i rheMac3.chr11             C 0 I 1
s macFas5.chr11              80809600 58 - 137757926 Attattccactcagctcacacatttattcagcacctacta--atgggtcaggcaaggtgt
i macFas5.chr11             C 0 I 1
s papAnu2.chr11              78762337 58 - 132286798 ATTATTCCACTCAGCTCACacatttattcagcacctacTA--ATGGGTCAGGCAAAGTGT
i papAnu2.chr11             C 0 I 1
s chlSab2.chr11              74685582 58 - 128539186 Attattccactcagctcacacatttattcagcacctacta--atgggtcaggcaaggtgt
i chlSab2.chr11             C 0 I 1
s calJac3.chr9               77498189 60 - 124281992 ATTATTCTGCTAAGCTcacacatttattcagcacctactatgatgggccaagcaatgtgt
i calJac3.chr9              C 0 I 1
s mm10.chr10                126902197 57 + 130694993 ATTATTCAGCTCAGCTCACAC---TGCTAAACACCTGCTCCCACGGGCCAGGCAGGATGG
i mm10.chr10                C 0 C 0
s canFam3.chr10              67351236 60 -  69331447 ACTACTCAGTTTAGCTCACACGTTTATTCAGCACCTACTCTGAGGGACCAAGCATAATGG
i canFam3.chr10             I 162 C 0

a score=536852.000000
s hg38.chr12_GL383550v2_alt    161314 161 +    169178 aagagactgaggaaacaCATGACTAAGAAAATTGCTAAAGATGAAGAGCAGCATGTGGTTTATGTAAGAAACATATCTGAAAAATATAGGCTCAGCAGGCCTTTAGGGTTATGAACAGTGCTTTATGTGTCATAGATGCTC----AATATCTAAATTGAGTG--------GGA
s panTro4.chr12              31399363 161 + 134246214 AAGAGACTGAAGAAACACATGACTAAGAAAATTGCTAAAGATGAAGAGCAGCATGTGGTTTATGTAAGAAACATATCTGAAAAATATAGGCTCACCAGGCCTTTAGGGTTATGAACAGTGCTTTATGTGTCATAGATGCTC----AATATCTAAATTGAGTG--------GGA
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78605470 161 - 136387465 AAGAGACTGAGGAAACACATGACTAAGAAAATTGCTAAAGATGAAGAGCAGCATATGGTTTATGTAAGAAACATATCTGAATAATATAGGCTCACCAGGCCTTTAGGGTTATGAACAGTGCTTTATGTGTCATAGATGCTC----AATATCTAAATTAAGTG--------GGA
i ponAbe2.chr12             I 1164 C 0
s nomLeu3.chr11              54804549 161 + 123690457 aagagactgaggaaacacatgattaaaaAAATTGGTAAAGATGAAGAGCAGCATGTGGTTTATGTAAGAAACATATCTGAGTAATATAGGCTCACCAGGCCTTTAGGGTTATGAACAATGCTTTATGTGTCATTGATGCTC----AATATCTAAATTGAGTG--------GGA
i nomLeu3.chr11             I 1 C 0
s rheMac3.chr11              79709496 165 - 134985053 aagagactgaggaaacagatgactaagaAAATTGCTAAAGATGAAAAGCAGCATGTGGTTTATGTAAGAAACATATCTGAATAATATAGGCTCACCAGGCCTTTACAGTTATGAACAGTGCTTTATGTGTCATATATGCTCAGTAAATATCTAAACTGGGTG--------GGA
i rheMac3.chr11             I 1 C 0
s macFas5.chr11              80809659 165 - 137757926 aagagactgaggaaacagatgactaagaAAATTGCTAAAGATGAAAAGCAGCATGTGGTTTATGTAAGAAACATATCTGAATAATATAGGCTCACCAGGCCTTTACAGTTATGAACAGTGCTTTATGTGTCATATATGCTCAGTAAATATCTAAACTGGGTG--------GGA
i macFas5.chr11             I 1 C 0
s papAnu2.chr11              78762396 158 - 132286798 AAGAGACTGAGGAAACAGATGACTAAGAAAATTGCTAAAGATGAAAAGCAGCATGTGGTTTATGTAAGAAACATATCTGAATAATATAGGCTCACCAGGCCTTTACGGTTA-------TGCTTTATGTGTcatatatgctcaataaatatctaaaCTGGGTG--------GGA
i papAnu2.chr11             I 1 C 0
s chlSab2.chr11              74685641 165 - 128539186 aagagactgaggaaacagatgactaagaAAATTGCTAAAGATGAAAAGCAGCATGCGGTTTCTGTAAGAAACATATCTGAATAATATAGGCTCACCAGGCCTTTACGGTTATGAACAGTGGTTTATGTGTCATATATGCTCAATAAATATCTAAACTGGGTG--------GGA
i chlSab2.chr11             I 1 C 0
s calJac3.chr9               77498250 173 - 124281992 aagagactgaggaaacagatgactaagaAAATTGCTAAAGTTGAAGAGCAGCATGTGGTTTATGTAAGAAACCTACCTGAATAATATAGACTCACCAGGCCTTTGGGGTTATAAACAGTGCTTTATGTGTCATAGATGCTCAATAAATATCTAAATTGAGTGTGGACATTTGA
i calJac3.chr9              I 1 C 0
s mm10.chr10                126902254 106 + 130694993 TAGAGTTGGAGAAAACG------------------------------------------------AGGACAAATGTCCAAGAAAAATAGGCATGCAATGCC-------TTGTGAACAGCAC-TTAGGGGTCAC-GGTGCTCCGTAAACA--AGAGTTGAATG--------GGA
i mm10.chr10                C 0 C 0
s canFam3.chr10              67351296 158 -  69331447 CAGAGACTGAGGAAGCAA-----TAAGAGAACTGATGAGGTTAAGGAGTAACAAATGATTCATGTGAGAAACATATAAAAATAATTTAGGCTCAAGAGACCTTGAAGATTATCAACAGTGCTTTA--TGTCATGGGTGCTTAATAAATATCTAGATTGaatg--------gaa
i canFam3.chr10             C 0 I 83

a score=621691.000000
s hg38.chr12_GL383550v2_alt    161475 194 +    169178 TGCTAGGATAGTCATTCATCTGGAATATTATAAAAATACAAACAACTCCTATGTACATAGACTATTAAAGCCAGAAGTC--AAAAAAAAAGTAACTACTTTTTAATTAAATTcaccttggatacattatttccaatcctcactacaaccctgcaaagtaagtattatctctaatttgcagat----aaagtgggctcagc
s panTro4.chr12              31399524 195 + 134246214 TGCTAGGATAGTCATTCATTTGGAATATTATAAAAATACAAACAACTCCTATGTACATAGACTATTAAAGCCAGAAGTC-AAAAAAAAAAGTAACTACTTTTTAATTAAATTcaccttggatacattatttccaatcctcactacaaccctgcaaagtaagtattatctctaatttgcagat----aaagtgggctcagc
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78605631 192 - 136387465 TGCTAGGATAGTCATTCATTTGGAATATTATACAAATACAAACAACTCCTATGTACATAGACTACTAAAGCCAGAAGTAAAAAAAAAAAAGTAACTACTTTTTAATTAAACTcaccttggatacattatttctaatcctcactacaaccctgca----aagtattatctctaatttgcagat----aaagtgggctcagc
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54804710 194 + 123690457 TGCTAGGATAGTCATTCATTTGGAATATTATAAAAATACAAACAACTCCTATGTACATAGACTATTAAAGCCAGAAGTC--AAAAAAAAAGTAACTACTTTTTAATTAAACTcaccttggatgcattatttctaatcctcactacaaccctgcaaagtaagtattatctctaatttgcagat----aaagtgggctcagc
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79709661 194 - 134985053 TGCTAGTATAGTCATTCATTTGGAATATTATAAAAATACAAACACCTCCTATGTACATAAACTGCTAAAGCCAGAAGTC--AAAAACAAAGTAACTACTTTTTAATTAAACTcaccttggatacattatttctaatcctcactacaaccctgca----aagtattatctctaatttgcagataaagaaagtgggctcagc
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80809824 194 - 137757926 TGCTAGTATAGTCATTCATTTGGAATATTATAAAAATACAAACACCTCCTATGTACATAGACTGCTAAAGCCAGAAGTC--AAAAACAAAGTAACTACTTTTTAATTAAACTcaccttggatacattatttctaatcctcactacaaccctgca----aagtattatctctaatttgcagataaagaaagtgggctcagc
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78762554 194 - 132286798 TGCTAGTATAGTCATTCATTtggaatattataaaaatacaaacacctcCTGTGTACATAGACTGCTAAAGCCAGAAGTC--AAAAACAAAGTAACTACGTTTTAATTAAACTCACCTTGGATACATTATTTCTAATCCTCACTACAACCCTGCA----AAGTATTATCTCTAATTTGCAGATAAAGAAAGTGGGCTCAGC
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74685806 194 - 128539186 TGCTAGTATAGTCATTCATTTGGAATATTATAAAAATACAAACACCTCCTATGTACATAGACTGCTAAAGCCAGAAGTG--AAAAACAAAGTAACTACTTTTTAATTAAACTcaccttggatacattatttctaatcctcactacaaccctgca----aagtattatctctaatttgcagataaagaaagtgggctcagc
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77498423 189 - 124281992 TGCTAGAATATTCATTCATTTGGAATATTATAAAAATGCAAACACCTCCTATGTGCATAGACTGCTAAAGCCAAAAGTC--AAAAAA-----AACTACTTTTTAATTAAACTcaccttggacatattatttctaatcctcactacaaccctgcg----aagtattatctctaatttgcagataaagaaagtgggctcaga
i calJac3.chr9              C 0 C 0
s mm10.chr10                126902360 185 + 130694993 AGCAGAAGGCATCACTCGCTTGGAATATTATACAAATATGAGCG---CCTGCACTTACAGACTAATAAAGCCATAAGCC--AAAGAT----TAGATTCTTTTT-ATCAAGGTCCACATATGTACATTATTACCAGTCCTCATGACAACCTTGCAAAA-TAGTATCAACCCTAATTTGCAGAT----AGAACTTGCCCAGC
i mm10.chr10                C 0 I 1348
e canFam3.chr10              67351454  83 -  69331447 I

a score=186508.000000
s hg38.chr12_GL383550v2_alt    161669 59 +    169178 aaaattcaataatttatctaggaccacacaactagCTTTCAATCCAGTTATTGAACTAA
s panTro4.chr12              31399719 59 + 134246214 aaaattcaataatttatctaggaccacacaactagCTTTCAATCCAGTTATTGAACTAA
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78605823 59 - 136387465 aaaattcaataatttatctaggaccacacaactagCTTTCAATCCAGTTATAGAACTAA
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54804904 59 + 123690457 aaaattcagtaatttatctaggaccacacaactagCTTTCAATCCAGTTATAGAACTAA
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79709855 59 - 134985053 aaaattcaataatttatctaggaccacacaactagCTTTCAATCCAGTTATAGAACTAA
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80810018 59 - 137757926 aaaattcaataatttatctaggaccacacaactagCTTTCAATACAGTTATAGAACTAA
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78762748 59 - 132286798 AAAATTCAATAATTTATCTAGGACCACACAACTAGCTTTCAATCCAGTTATAGAACTAA
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74686000 59 - 128539186 aaaattcaataatttatctagcaccacacaactagCTTTCAATCCAGTTATAGAACTAA
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77498612 59 - 124281992 aaaattcaataatttgtctacgaccacacaattagCTTTCAATCCAGTTACAGAACTAA
i calJac3.chr9              C 0 C 0
e mm10.chr10                126902545 1348 + 130694993 I
e canFam3.chr10              67351454 83 -  69331447 I

a score=37508.000000
s hg38.chr12_GL383550v2_alt    161728 13 +    169178 AAC--ACACATATGG
s panTro4.chr12              31399778 13 + 134246214 AAC--ACACATATGG
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78605882 13 - 136387465 AAC--ACACATATGG
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54804963 13 + 123690457 AAC--ACACATATGG
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79709914 15 - 134985053 AACATACACATATGG
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80810077 15 - 137757926 AACATACACATATGG
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78762807 15 - 132286798 AACATATACGTATGG
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74686059 15 - 128539186 AACATACACATATGG
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77498671 15 - 124281992 AACATACACATATGG
i calJac3.chr9              C 0 C 0
s mm10.chr10                126903893 13 + 130694993 AAC--GAACTTGTGG
i mm10.chr10                I 1348 C 0
e canFam3.chr10              67351454 83 -  69331447 I

a score=303180.000000
s hg38.chr12_GL383550v2_alt    161741 84 +    169178 AAA-------ACTAAGCCATTACAATTCAGTGTGATTAGTTTGGAATACTGAAGGCAGGCTAGATATGCCTAGAAATG-----GACCATAGCCTAT
s panTro4.chr12              31399791 84 + 134246214 AAA-------ACTAAGCCATCACAATTCAGTGTGATTAGTTTGGAATACTGAAGGCAGGCTAGATATGCCTAGAAATG-----GACCATAGCCTAT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78605895 84 - 136387465 AAA-------ACTAAGCCATTACAATTCAGTGTGATTAGCTTGGAATACTGAAGGCAGGCTAGATATGCCTAGAAATG-----GACCATAGCCTAT
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54804976 84 + 123690457 AAA-------ACTAAGCCATTACAATTCAGTGTGATTAGTTTGGAATACTGAAGGCAGGCTAGATATGCCTAGAAATG-----GACCATAGCCTAT
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79709929 84 - 134985053 AAA-------ACTAAGCCATTACAATTCAGTGTGATTAGTGTGGAATACTGAAGGAAGGCTAGATATGCCTAGAAATG-----GACCATAGCCTAC
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80810092 84 - 137757926 AAA-------ACTAAGCCATTACAATTCAGTGTGATTAGTGTGGAATACTGAAGGAAGGCTAGATATGCCTAGAAATG-----GACCATAGCCTAC
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78762822 84 - 132286798 AAA-------ACTAAGCCATTACAATTCAGTGTGATTAGTGTGGAATACTGAAGGAAGGCTAGATATGCCTAGAAAAG-----GACCATAGCCTAC
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74686074 84 - 128539186 AAA-------ACTAAGCCATTACAATTCAGTGTGATTAGTGTGGAATACTGAAGGAAGGCTAGATATGCCTAGAAATG-----GACCATAGCCTAC
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77498686 84 - 124281992 AAA-------ACTCAGCCATTACAATACAGTGTGATTAGTTTGGAATACTGAAGGAAGGCTAGCTATGCCTAGAAATG-----GCCCAGAGCCTAT
i calJac3.chr9              C 0 C 0
s mm10.chr10                126903906 89 + 130694993 AAACTGAGTCATTCAAATATTCAAATTCAGCGTGGTTAGTTTGGAATGCTAGAGAAAAGTCAG-------TAGACATGGTACAGACCATAACCTGT
i mm10.chr10                C 0 I 532
s canFam3.chr10              67351537 76 -  69331447 AAA-------ACGATACTATTACAAGTTACTGAAATGAGTCTGCAATACTCAGGAAAGGCTAGATAGA---GAAGATG-----G-----GGCCTGT
i canFam3.chr10             I 83 C 0

a score=104400.000000
s hg38.chr12_GL383550v2_alt    161825 32 +    169178 ATACATTTGAAATACTATTTGGA-TTTTTTTCA
s panTro4.chr12              31399875 33 + 134246214 ATACATTTGAAATACTATTTGGATTTTTTTTCA
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78605979 33 - 136387465 ACACATTTGAAATACTATTTGGATTTTTTTTCA
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54805060 32 + 123690457 ACACATTTGAAATACTATTTGGA-TTTTTTTTA
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79710013 33 - 134985053 ACACATTTGAAATACTATTTGGATTTTTTTTCA
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80810176 33 - 137757926 ACACATTTGAAATACTATTTGGATTTTTTTTCA
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78762906 33 - 132286798 ACACATTTGAAAtactatttggattttttttca
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74686158 33 - 128539186 ACACATTTGAAATACTATTTAGATTTTTTTTCA
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77498770 33 - 124281992 AAACATTTGAAATACTATTTGGATTTTTTTTCT
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67351613 32 -  69331447 AAGCACATGAAATACTACTGAAA-TATTATTCA
i canFam3.chr10             C 0 I 620
e mm10.chr10                126903995 532 + 130694993 I

a score=4692259.000000
s hg38.chr12_GL383550v2_alt    161857 1582 +    169178  
s panTro4.chr12              31399908 1579 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78606012 1583 - 136387465  
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54805092 1580 + 123690457  
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79710046 1579 - 134985053  
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80810209 1579 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78762939 1581 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74686191 1579 - 128539186  
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77498803 1534 - 124281992  
i calJac3.chr9              C 0 C 0
e mm10.chr10                126903995  532 + 130694993 I
e canFam3.chr10              67351645  620 -  69331447 I

a score=518322.000000
s hg38.chr12_GL383550v2_alt    163439 167 +    169178 tctggatactATTTGCAATACCCTTCAGCTACAGGAATAAGTAAAAACGTACAAACCAAAAGCTGCAAC---ATTTCCTTACTAAATTAGCTAAAACTGTTTCAATACTCATTGTTGAAGAAACAGAT-GGAAAAAAATT-----CATACCACAGTATCAATGGTTGTCTAGGTAT
s panTro4.chr12              31401487 167 + 134246214 tctggatactATTTGCAATACCCTTCAGCTACAGGAATAAGTAAAAAAGTACAAACCAAAAGCTGCAAC---ATTTCCTTACTAAATTAGCTAAAACTGTTTCAATACTCATTGTTGAAGaaacagat-ggaaaaaaatt-----cataccgcagtatcagtggttgtctaggtat
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78607595 167 - 136387465 tctggatactATTTGCAATACCCTTCAGCTACAGGAATAAGTAAAAAAGTACAAACCAAAAGCCGCAAC---ATTTCCTTACTAAATTAGCTAAAACTCTTTCAATACTCATTGTTGAAGAAACAGAC-AGAAAAAAATT-----CATACCACAGTATCAATGGTTGTCTAGGTAT
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54806672 167 + 123690457 tctggatactATTTGCAATACCCTTCAGCTACAGGAATAAGTAAAAAAGTACAAACCAAAAGCTGCAAC---ATTTCCTTACTAAATTAGCTAAAACTCTTTCAATACTCATTGTTGAAGAAACAGAC-GGAAAAAAATT-----CATACCACAGTATCAGTGGTTGTCTAGGTAT
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79711625 167 - 134985053 tctggatactATTTGCAACACCCTTCAGCTACAGGAATAAGTAAAAAAGTACAAACCAAAAGCTGCAAC---ATTTCCTTACTAAATCAGCTAACACTCTTTCAATACTGATTGTTGAAGAAACAGAG-GGGAAAAAAAT-----CATATCACAGTATCAATGGCGGTCTAGGTAT
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80811788 166 - 137757926 tctggatactATTTGCAACACCCTTCAGCTACAGGAATAAGTAAAAAAGTACAAACCAAAAGCTGCAAC---ATTTCCTTACTAAATCAGCTAACACTCCTTCAATACTGATTGTTGAAGAAACAGA--GGGAAAAAAAT-----CATATCACAGTATCAATGGCGGTCTAGGTAT
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78764520 166 - 132286798 tctggatacTATTTGCAACACCCTTCAGCTACAGGAATAAGTAAAAAAGTACAAACCAAAAGCTGCAAC---ATTTCCTTACTAAATCAGCTAACACTCTTTCAATACTGATTGTTGAAGAAACAGA--GGGAAAGAAAT-----CATATCACAGTATCAATGGCGGTCTAGGTAT
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74687770 165 - 128539186 tctggatactATTTGCAACACCCTTCAGCTACAGGAATAAGTAAAAAAGTACAAACCAAAAGCTGCAAC---ATTTCCTTACTAAATCAGCTAACACTCTTTCAATACTGATTGTTGAAGAAACAGA--GGGAAA-AAAT-----CATATCACAGTATCAATGGCGGTCTAGGTAT
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77500337 164 - 124281992 cctgTAGAATATTTGCAATACCCTTCAGCTACAA----AAGCAAAAAAGTACAAACCAAAAGCTGCAAT---ATATCCTTACTAAACTAGTTAAAACTCTTTCAATTCTCATTGTTGAAGGAACAGAGAGAAAAAAAAAT-----CATACCACAATGTCAATGGTTGTGTAGATAT
i calJac3.chr9              C 0 C 0
s mm10.chr10                126904527 171 + 130694993 TCGAGATTCTGCTTGAAATATTACTCAACTACACGGATAAGCAAAAA--TGCAAACTAAGAGATAAAACTAAAATGCAATATTATTCCAGAAAACATT-TTTCAATACTCATTACTAAAGGAACAGG--AAGAAAAAAATAGAAGTATATCAAAATATCAGTGGGGgtatgcgtgt
i mm10.chr10                I 532 I 1071
e canFam3.chr10              67351645 620 -  69331447 I

a score=432757.000000
s hg38.chr12_GL383550v2_alt    163606 148 +    169178 TGGAAtttttttgttacattctcctgaaattttctaatgttcctcaataagcatgtattacctttataatcagaaaaataaaCTTTAAAAAATCAAGTGGGCTTTGGATGCCATGTGTAACTTCATCTGTATACAGTATAAAGACATA
s panTro4.chr12              31401654 148 + 134246214 tggaatttttttgttacattctcctgaaattttctaatgttcctcaataagcacgtattacctttataatcagaaaaataaaCTTTAAAAAATCAAGTGGGCTTTGGATGCCATGTGTAACTTCATCTGTATACAGTATAAAGACATA
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78607762 148 - 136387465 TGGAAtttttttgttacattctcctgaaattttctaatgttcctcaataagcatgtattacctttataatcagaaaaataaaCTTTAAAAAATCAAGTGGGCTTTGGATGCCATGTGTAACTTCATCTGTATACAGTATAAAGACATA
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54806839 148 + 123690457 TGGAAtttttttgttacattctcctgaaattttctaatgttcctcaataagcatgtattacctttataatcagaaaaataaaCTTTAAAAAATCAAGTGGGCTTTGGATGCCATGTGTAACTTCATCTGTATACAGTATAAAGACATA
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79711792 142 - 134985053 TGGAAttttctcgttacattcttctgaaattttctaatgttcctcaataagcatatattacctttataatcagaaaaaTCAACTTTAAAAAATAAAGTGGGCTTTGGATGTCATGTGTAACTTCATCTGTATACAGTATAAA------
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80811954 142 - 137757926 TGGAAttttctcgttacattcttctgaaattttctaatgttcctcaataagcatatattacctttataatcagaaaaaTCAACTTTAAAAAATAAAGTGGGCTTTGGATGTCATGTGTAACTTCATCTGTATACAGTATAAA------
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78764686 142 - 132286798 TGGAATTTTCTTGTTACATTCTTCTGAAATTTTCTAATGTTCCTCAATAAGCATATATTacctttataatcagaaaaatcaactttaaaaaataaagtgggcTTTGGATGTCATGTGTAACTTCATCTGTATACAGTATAAA------
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74687935 135 - 128539186 TGGAAttttcttgttacattcttctgaaattttctaatgttcctcaataagcatatattacctttataatcaaaaaaaTCAACTTTAAAAAATAAAGTGGGCTTTGGATGTCATGTGTAACTTCATCTGTATAC-------A------
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77500501 148 - 124281992 TGGAAtttttttgttacattcttctgaaattttctaatgttcctcaataagcatgtattgcctttataatcagaaaaataaaCTTTAAATAATTGAGTGGGCTTTGGATGCCATGTGTACCTTCATCTGCATACAGTATAAAGACATA
i calJac3.chr9              C 0 C 0
e mm10.chr10                126904698 1071 + 130694993 I
e canFam3.chr10              67351645 620 -  69331447 I

a score=687789.000000
s hg38.chr12_GL383550v2_alt    163754 279 +    169178 GGTATGGAATAAAAACACATTAAGGAAGAGATAATGAACAGCAAATACAAATGAGTTTTAAAAAGAAAAAGAATTACCACAAAGAAATTAGAGCAAGGGCAAAGATTTAGCTATAAGGATTTTCATTTCTCCATTGCAGCACTAATTGAGAGCAAAAATggccaggccagtggcatgtaatcatagctatttgggaggctaaggcaggaggactgcctgagcccagaagttcaagaccagcctgtgtgatacagcaagacacctcctcctc------------------aaaaaaAA
s panTro4.chr12              31401802 276 + 134246214 GGTATGGAATAAAAACACATTAAGGAAGAGATAATGAACAGCAAATACAAATGAGTTTTAAAAAGAAAAAGAATTACCACAAAGAAATTAGAGCAAGGGCAAAGATTTAGCTATAAGGATTTCCATTTCTCCATTGCAGCACTAATTGGGAGCAAAAATGgccaggccagtggcatgtaatcatagctatttgggaggctaaggcaggaggactgcctgagccc---agttcaagaccagcctgtgtgatacagcaacacacctcctcctc------------------aaaaaaaa
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78607910 279 - 136387465 GGTATGGAATAAAAACACATTAAGGAAGAGATAATGAAGTGCAAATACAAGTGAGTTTTAAAAAGAAAAAGAATTACCACAAAGAAATTAGAGCAAGGGCAAAGATTTAGCTATAAGGATTTTCATTTCCCCACTGCAGCACTAATTGTGAGCAAAAACGGCCAGGCCAGTGACAGgtaatcatagctatttgggaggctgaggtaggaggactgcctgagcccagaagttcaagaccagcctgtgtgatacagcaagacacctcctcctc------------------aaaaaaaa
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54806987 279 + 123690457 GGTATGGAATAAAAACACATTAAAGAAGAGATAATGAAGTGCAAATACAAATGAGTTTTAAAAAGGAAAAGAATTACCACAAAGAAATTAGAGCAAGGGCAAAGATTTAGCTATAAGGATTTTCATTTCTCCATTGCAGCACTAATTGAGAGCAAAAACggccaggccagtggcatgtaatcatagctacttgggaggctgaggcaggagacctgcctgagcccagaagttcaagaccagcctgtgtgatacagcaagacacctcctcctc------------------aaaaaaaa
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79711934 280 - 134985053 -GTATGGAATAAAAAGGCATTAAGGAAGAGATAATGAAGTGCAAATACAAATGAGTTTTAAAAAGAAAAAGAATTACCACAAAGAAATTAGAGCAAGGGCAAAGATTTAGCTATAAGGATTTTCATTTCTCCATTGTAGCACTAATTGAGAGCAAAAATggccaggccagtggcatgtaatcatagctatttgggaggctgaggcaggaggactgcctgagcccagaagttcaagaccagcctgtgtgatacagcaagacacctcctcctcct----------------aaaaaaaa
i rheMac3.chr11             C 0 I 14
s macFas5.chr11              80812096 278 - 137757926 -GTATGGAATAAAAAGGCATTAAGGAAGAGATAATGAAGTGCAAATACAAATGAGTTTTAAAAAGAAAAAGAATTACCACAAAGAAATTAGAGCAACGGCAAAGATTTAGCTATAAGGATTTTCATTTCTCCATTGTAGCACTAATTGAGAGCAAAAATGgccaggccagtggcatgtaatcatagctatttgggaggctgaggcaggaggactgcctgagcccagaagttcaagaccagcctgtgtgatacagcaagacacctcctcCTC------------------aaaaaaaa
i macFas5.chr11             C 0 I 14
s papAnu2.chr11              78764828 278 - 132286798 -GTATGGAATAAAAAGGCATTAAGGAAGAGATAATGAAGTGCAAAtacaaatgagttttaaaaagaaaaagaattaccaCAAAGAAATTAGAGCAAGGGCAAAGATTTAGCTATAAGGATTTTCATTTCTCCATTGTAGCACTAATTGAGAGCAAAAATGGCCAGGCCAGTGGCATGTAATcatagctatttgggaggctgaggcaggaggactgcctgagcccagaagttcaagaccagcctgtgtgATACAGCAAGACacctcctcctc------------------aaaaaaaa
i papAnu2.chr11             C 0 M 354
s chlSab2.chr11              74688070 296 - 128539186 -GTATGGAATAAAAAGGCATTAAGGAAGAGATAATGAAGTGCAAATACAAATGAGTTTTAAAAAGAAAAAGAATTACCACAAAGAAATTAGAGCAAGGGCAAAGATTTAGCTATAAGAATTTTCATTTCTCCATTGTAGCACTAATTGAGAGCAAAAATGgccaggccagtggcatgtaatcatagctatttgggaggctgaggcaggaggactgcctgagcccagaagttcaagaccagcctgtgtgatacagcaagacacctcctcCTCCTCaaaaaaaaaaaaaaaaaaaaaaa
i chlSab2.chr11             C 0 C 0
e mm10.chr10                126904698 1071 + 130694993 I
e canFam3.chr10              67351645 620 -  69331447 I
e calJac3.chr9               77500649   0 - 124281992 C

a score=199696.000000
s hg38.chr12_GL383550v2_alt    164033 123 +    169178 GGGGCGGCAGGGGAAGACATCAATTGTTTAAATATCCAACAAGAGGTATAATGGAATATAT------ACAACCATGTTAAGTGTCTTTTTTAAACAAAATATGTTCATTAAAAGTTTTTGGGTGTTTTG
s panTro4.chr12              31402078 123 + 134246214 GGGGCGGTGGGGGAAGACATCAATTGTTTAAATATCCAACAAGAGGTATAATGGAATATAT------ACAACCATGTTAAGTGTCTTTTTTAAACAAAATATGTTCATTAAAAGGTTTTGGGTGTTTTG
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78608189 123 - 136387465 GGGGCAGCGGGGGAAGACATCAATTGTTTAAATATCCAACAAGAGGTATAATGGAATATAT------ACAACCATGTTAAGTGTCTTTTTTAAACAAAATATGTTCATTAAAATTTTTGGGGAGttttg
i ponAbe2.chr12             C 0 I 3749
s nomLeu3.chr11              54807266 123 + 123690457 aGGGTGGCGGGAAAAGACATCAATTGTTTAAATATCCAACAAGAGATATAATGGAATATAT------ACAACCATGTTAAGTGTCTGTTTTAAACAAAATATGTTCATTAAAAGTTTTTGAGTGTTTTG
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79712228 123 - 134985053 aaaGGAGTGGGGAAAGACATCAATTGTTTAAATATCCAACAAGAGGTAAAATGGAACATAT------ATGACCACGTTAAGTGTCTCTTTTAAACAAAATATGTTCATTAAAAttttttgggttttttg
i rheMac3.chr11             I 14 I 374
s macFas5.chr11              80812388 117 - 137757926 aaaGGAGTGGGGGAAGACATCAATTGTTTAAATATCCAACAAGAGGTATAATGGAACATAT------ATGACCACGTTAAGTGTCTCTTTTAAACAAAATATGTTCATTAAAAttttttgggt------
i macFas5.chr11             I 14 C 0
s chlSab2.chr11              74688366 129 - 128539186 aaaGGAGTGGGGGAAGACATCAATTGTTTAAATATCCAACAAGAGGTATAATGGAACATATATAACCATAACCATGTTAAGTGTCTCTTTTAAACAAAATATGTTCATTAAAAttttttgggttttttg
i chlSab2.chr11             C 0 C 0
e mm10.chr10                126904698 1071 + 130694993 I
e canFam3.chr10              67351645 620 -  69331447 I
e calJac3.chr9               77500649   0 - 124281992 C
e papAnu2.chr11              78765106 354 - 132286798 M

a score=392.000000
s hg38.chr12_GL383550v2_alt    164156 7 +    169178 ttttgtt
s panTro4.chr12              31402201 7 + 134246214 ttttgtt
i panTro4.chr12             C 0 C 0
s nomLeu3.chr11              54807389 4 + 123690457 ---GGGt
i nomLeu3.chr11             C 0 C 0
e mm10.chr10                126904698 1071 + 130694993 I
e canFam3.chr10              67351645 620 -  69331447 I
e calJac3.chr9               77500649 0 - 124281992 C
e chlSab2.chr11              74688495 0 - 128539186 C
e papAnu2.chr11              78765106 354 - 132286798 M
e macFas5.chr11              80812505 0 - 137757926 C
e rheMac3.chr11              79712351 374 - 134985053 I
e ponAbe2.chr12              78608312 3749 - 136387465 I

a score=47582.000000
s hg38.chr12_GL383550v2_alt    164163 56 +    169178 tttttgtttttttg---ttttttgagccagagtcttgctctgtcgcccaggctggagtg
s panTro4.chr12              31402208 59 + 134246214 tttttgtttttttgtttttttttgagccagagtcttgctctgtcgcccaggctggagtg
i panTro4.chr12             C 0 I 10
s ponAbe2.chr12              78612061 56 - 136387465 tttttttttttttt---ttttttgagccagagtcttgctctgtcacccaggctggagtg
i ponAbe2.chr12             I 3749 C 0
s nomLeu3.chr11              54807393 42 + 123690457 -----------------ttttttgagccagagtcttactctgttgcccaggctggagtg
i nomLeu3.chr11             C 0 C 0
s macFas5.chr11              80812505 42 - 137757926 -----------------tttttggaaccggagtcttgctctgttgcctaggctggagtg
i macFas5.chr11             C 0 C 0
s chlSab2.chr11              74688495 36 - 128539186 -----------------------gagccggagtcttgctctgttgcccaggctggagtg
i chlSab2.chr11             C 0 C 0
e mm10.chr10                126904698 1071 + 130694993 I
e canFam3.chr10              67351645 620 -  69331447 I
e calJac3.chr9               77500649  0 - 124281992 C
e papAnu2.chr11              78765106 354 - 132286798 M
e rheMac3.chr11              79712351 374 - 134985053 I

a score=3562.000000
s hg38.chr12_GL383550v2_alt    164219 5 +    169178 cagtg
s ponAbe2.chr12              78612117 5 - 136387465 cattg
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54807435 5 + 123690457 caatg
i nomLeu3.chr11             C 0 M 100
s macFas5.chr11              80812547 5 - 137757926 cagtg
i macFas5.chr11             C 0 C 0
s chlSab2.chr11              74688531 5 - 128539186 cagtg
i chlSab2.chr11             C 0 C 0
e mm10.chr10                126904698 1071 + 130694993 I
e canFam3.chr10              67351645 620 -  69331447 I
e calJac3.chr9               77500649 0 - 124281992 C
e papAnu2.chr11              78765106 354 - 132286798 M
e rheMac3.chr11              79712351 374 - 134985053 I
e panTro4.chr12              31402267 10 + 134246214 I

a score=2394.000000
s hg38.chr12_GL383550v2_alt    164224 6 +    169178 gcgcca
s ponAbe2.chr12              78612122 6 - 136387465 acaccg
i ponAbe2.chr12             C 0 C 0
s macFas5.chr11              80812552 6 - 137757926 gcgcca
i macFas5.chr11             C 0 C 0
s chlSab2.chr11              74688536 6 - 128539186 gcgcca
i chlSab2.chr11             C 0 C 0
e mm10.chr10                126904698 1071 + 130694993 I
e canFam3.chr10              67351645 620 -  69331447 I
e calJac3.chr9               77500649 0 - 124281992 C
e papAnu2.chr11              78765106 354 - 132286798 M
e rheMac3.chr11              79712351 374 - 134985053 I
e nomLeu3.chr11              54807440 100 + 123690457 M
e panTro4.chr12              31402267 10 + 134246214 I

a score=42508.000000
s hg38.chr12_GL383550v2_alt    164230 57 +    169178 tcccggctcactgcaacctctgcctcctgggttcaagcaattctcct-gcctcagtga
s ponAbe2.chr12              78612128 57 - 136387465 tcacgactgactgcaaccactgcctcctgagtacaagccattatcct-gcctcagTGA
i ponAbe2.chr12             C 0 I 175
s nomLeu3.chr11              54807540 58 + 123690457 tcccggctcactgcaacctctgcctcccgggttcaagtgattctcctcgcctcagtga
i nomLeu3.chr11             M 100 C 0
s macFas5.chr11              80812558 57 - 137757926 tcccggctcactgcaacctccgcctcccaggttcaagtgattctcct-gcctcagtga
i macFas5.chr11             C 0 C 0
s chlSab2.chr11              74688542 57 - 128539186 tcccggctcactgcaacctccgccttccaggttcaagtgattctcct-gcctcagcga
i chlSab2.chr11             C 0 C 0
e mm10.chr10                126904698 1071 + 130694993 I
e canFam3.chr10              67351645 620 -  69331447 I
e calJac3.chr9               77500649  0 - 124281992 C
e papAnu2.chr11              78765106 354 - 132286798 M
e rheMac3.chr11              79712351 374 - 134985053 I
e panTro4.chr12              31402267 10 + 134246214 I

a score=15202.000000
s hg38.chr12_GL383550v2_alt    164287 29 +    169178 gctgggatcgcgccactgcactcCAGCCT
s nomLeu3.chr11              54807598 29 + 123690457 gccaggattgcgccactgcactccagcct
i nomLeu3.chr11             C 0 C 0
s macFas5.chr11              80812615 29 - 137757926 gctgggattgtgccactgcactccagcct
i macFas5.chr11             C 0 C 0
s chlSab2.chr11              74688599 29 - 128539186 gctgggattgtgccactgcactccagcct
i chlSab2.chr11             C 0 C 0
e mm10.chr10                126904698 1071 + 130694993 I
e canFam3.chr10              67351645 620 -  69331447 I
e calJac3.chr9               77500649  0 - 124281992 C
e papAnu2.chr11              78765106 354 - 132286798 M
e rheMac3.chr11              79712351 374 - 134985053 I
e ponAbe2.chr12              78612185 175 - 136387465 I
e panTro4.chr12              31402267 10 + 134246214 I

a score=9682.000000
s hg38.chr12_GL383550v2_alt    164316 11 +    169178 GGGCGACAGAG
s nomLeu3.chr11              54807627 11 + 123690457 ggacaacagag
i nomLeu3.chr11             C 0 C 0
s macFas5.chr11              80812644 11 - 137757926 gggcgacagag
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78765464 11 - 132286798 gggcgacagag
i papAnu2.chr11             M 354 C 0
s chlSab2.chr11              74688628 11 - 128539186 gggcgacagag
i chlSab2.chr11             C 0 C 0
e mm10.chr10                126904698 1071 + 130694993 I
e canFam3.chr10              67351645 620 -  69331447 I
e calJac3.chr9               77500649  0 - 124281992 C
e rheMac3.chr11              79712351 374 - 134985053 I
e ponAbe2.chr12              78612185 175 - 136387465 I
e panTro4.chr12              31402267 10 + 134246214 I

a score=43786.000000
s hg38.chr12_GL383550v2_alt    164327 43 +    169178 CAAGACAACAGCTC---------AAAAAAAAAAAAAATTCAggctgggcgcg
s ponAbe2.chr12              78612360 43 - 136387465 CAAGACAACAGCTC---------AAAAAAAAAAAAATTTCAggctgggtgcg
i ponAbe2.chr12             I 175 C 0
s nomLeu3.chr11              54807638 44 + 123690457 cgagacaacagctcg--------aaaaaaaaaaaaaaTTCAggccaggcaca
i nomLeu3.chr11             C 0 C 0
s macFas5.chr11              80812655 48 - 137757926 cgagacagcagctcggg----aaaaaaaaaaaaaaaTTTCAggccgggcaca
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78765475 49 - 132286798 cgagacagcagctcggg---aaaaaaaaaaaaaaaatttcaggccgggcaca
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74688639 52 - 128539186 cgagacagcagctcgggggaaaaaaaaaaaaaaaaCTTTCAggccgggcaca
i chlSab2.chr11             C 0 C 0
e mm10.chr10                126904698 1071 + 130694993 I
e canFam3.chr10              67351645 620 -  69331447 I
e calJac3.chr9               77500649  0 - 124281992 C
e rheMac3.chr11              79712351 374 - 134985053 I
e panTro4.chr12              31402267 10 + 134246214 I

a score=296265.000000
s hg38.chr12_GL383550v2_alt    164370 172 +    169178 ggtggctcatgcctgtaatcccagcactttgggagaccgaggaaggcagatcacttgggatgaggagttcgagaccagcctgaccaacatggtgaaacctcatctctactaaaaatacaaaaattagctgggtgtggtggcgccgcctataatcccaagctactcaggagac
s panTro4.chr12              31402277 172 + 134246214 ggtggctcatgcctgtaatcccagcactttgggagaccgaggaaggcagatcacttgggatgaggagttcgagaccagcctgaccaacatggtgaaacctcatctctactaaaaatacaaaaattagctgggtgtggtggcgccgcctataatcccaagctactcaggagac
i panTro4.chr12             I 10 C 0
s ponAbe2.chr12              78612403 172 - 136387465 ggtggctcaagcctgtaatcccagcactttgggagaccgaggaaggcagatcacttgggatcaggagttcgagaccagcctgaccaacatggtgaaacctcatctctactaaaaatgcaaaaattagctggctgtggtggcgccacctataatcccaagctactcaggagac
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54807682 156 + 123690457 ggtggctcatgcctataatcccagcactttgggagaccgaggagggcagatccct----------------agaccagcctgaccaacatggtgaaacctcatctctactaaaaatacaaaaattatctgggtatggtggcaccgcctataatcccaagctactcaggagac
i nomLeu3.chr11             C 0 C 0
s macFas5.chr11              80812703 171 - 137757926 ggtggctcatgcctgtaatcccagcactttgggagactgaggcgggcagatcacttgggatcaggagtttgagactagcctgaccaacatggtgaaacctcatctctactaaaaatagaaaaattagctgagtgtggtggcaccgcctataatccc-agctactcaggagag
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78765524 171 - 132286798 ggtggctcatgcctgtaatcccagcactttgggagactgaggcgggcagatcacttgggatcaggagtttgagactagcctgaccaacatggtgaaacctcatctctactaaaaatagaaaaattagctgagtgtggtggcaccgcctataatccc-agctactcaggagag
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74688691 171 - 128539186 ggtggctcatgcttgtaatcccagcactttgggagactgaggcgggcagatcacttgggatcaggagtttgagactagcctgaccaacatggtgaaacctcatctctactaaaaatagaaaaattagctgagtgtggtggcaccgcctataatctc-agctactcaggagac
i chlSab2.chr11             C 0 C 0
e mm10.chr10                126904698 1071 + 130694993 I
e canFam3.chr10              67351645 620 -  69331447 I
e calJac3.chr9               77500649   0 - 124281992 C
e rheMac3.chr11              79712351 374 - 134985053 I

a score=1350528.000000
s hg38.chr12_GL383550v2_alt    164542 563 +    169178  
s panTro4.chr12              31402449 571 + 134246214  
i panTro4.chr12             C 0 I 423
s ponAbe2.chr12              78612575 563 - 136387465  
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54807838 576 + 123690457  
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79712725 565 - 134985053  
i rheMac3.chr11             I 374 C 0
s macFas5.chr11              80812874 564 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78765695 565 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74688862 568 - 128539186  
i chlSab2.chr11             C 0 C 0
e mm10.chr10                126904698 1071 + 130694993 I
e canFam3.chr10              67351645 620 -  69331447 I
e calJac3.chr9               77500649   0 - 124281992 C

a score=211470.000000
s hg38.chr12_GL383550v2_alt    165105 89 +    169178 aaggctactaagacagtctgctacaattctaagactaattttacccaccaccgtcactcagcaatc--agtttgccaaccccaccaaaaca
s panTro4.chr12              31403443 89 + 134246214 AAGgctactaagacagtctgctacaattctaagactaattttacccaccactgtcactcagcaatc--agtttgccaaccccaccaaaaca
i panTro4.chr12             I 423 C 0
s ponAbe2.chr12              78613138 89 - 136387465 aaggctactaagacagcctgctacaattctaagactaattttacccaccactgtcactcagtaatc--agtttgccaaccccaccaaaaca
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54808414 85 + 123690457 aaggctactaagacagcctgctacaattctaagaataattttacccaccactgtcactcag----c--agtttgccaaccccaccaaaaca
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79713290 91 - 134985053 aaggctactaagacagcctgctacaattctaagatgaattttacccaccactgtcactcagcaatcaaaatttgccaaccccaccaaaaca
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80813438 91 - 137757926 aaggctactaagacagcctgctacaattctaagatgaattttacccaccactgtcactcagcaatcaaaatttgccaaccccaccaaaacA
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78766260 91 - 132286798 AAGGCTACTAAGACAGCCTGCTACAATTCTAAGATGAATTTTACCCACCACTGTCACTCAGCAATCAAAATTTGCCAACCCcaccaaaaca
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74689430 91 - 128539186 aaggctactaagacagcctgctacagttctaagatgaattttacccaccactgtcactcagcaatcaaaatttgccaaccccaccaaaacA
i chlSab2.chr11             C 0 C 0
e mm10.chr10                126904698 1071 + 130694993 I
e canFam3.chr10              67351645 620 -  69331447 I
e calJac3.chr9               77500649  0 - 124281992 C

a score=1365.000000
s hg38.chr12_GL383550v2_alt    165194 1 +    169178 t
s panTro4.chr12              31403532 1 + 134246214 t
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78613227 1 - 136387465 t
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54808499 1 + 123690457 t
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79713381 1 - 134985053 t
i rheMac3.chr11             C 0 C 0
s chlSab2.chr11              74689521 1 - 128539186 T
i chlSab2.chr11             C 0 C 0
e mm10.chr10                126904698 1071 + 130694993 I
e canFam3.chr10              67351645 620 -  69331447 I
e calJac3.chr9               77500649 0 - 124281992 C
e papAnu2.chr11              78766351 0 - 132286798 C
e macFas5.chr11              80813529 0 - 137757926 C

a score=32140.000000
s hg38.chr12_GL383550v2_alt    165195 61 +    169178 taatagtgccaataaactctcttggagaccaatacgtaacatttctccttcttataaagtc
s panTro4.chr12              31403533 61 + 134246214 taatagtgccaataaactctcttggagaccaatacgtaacatttctccttcttataaagtc
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78613228 61 - 136387465 taatagtgccagtaaactctcttggagaccaatacgtaacatttctccttcttataaaatc
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54808500 61 + 123690457 taatagtgccaataagctctcttgaagaccaataagtaacatttctccttcttataaaatc
i nomLeu3.chr11             C 0 C 0
e mm10.chr10                126904698 1071 + 130694993 I
e canFam3.chr10              67351645 620 -  69331447 I
e calJac3.chr9               77500649  0 - 124281992 C
e chlSab2.chr11              74689522  0 - 128539186 C
e papAnu2.chr11              78766351  0 - 132286798 C
e macFas5.chr11              80813529  0 - 137757926 C
e rheMac3.chr11              79713382  0 - 134985053 C

a score=185631.000000
s hg38.chr12_GL383550v2_alt    165256 235 +    169178 tctaacctcttcactcttcagacatcccgaagaccaccccagtctacatatatgccccaaattactattttcttcccaaataaagcattctaatttcaaagattcatctctatattctgacttAACAGCTTTTAACACTTAATGCTGttttttagttgaca-aataaaaattatatttatagtataaaac---atgttttgaaatatatatacattgtggaatggttaaataaagctaa
s panTro4.chr12              31403594 235 + 134246214 tctaacctcttcactcttcagacatcccaaagaccaccccagtctacatatatgccccaaattactattttcttcccaaataaagcattctgatttcaaagattcatctctacattctgacttcACAGCTTTTAACACTTAATGCTGttttttagttgaca-aataaaaattatatttatagtataaaac---atgttttgaaatatatatacattgtggaatggttaaataaagctaa
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78613289 235 - 136387465 tctaaccacttcactcttcagacatcccgaagaccaccccagtctacatatatgccccaaattactattttcttcccaaataaagcattctaatttcaaagattcatctctatattctgacttcACAGCTTTTAACACTTAATGCCGttttttagttgaca-aataaaaattatatttatagtatacaac---atgttttgaaatatatatacattgtggaatggttaaataaagctaa
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54808561 232 + 123690457 tctaacctctccactcttcagacatcccgaagacccccccactctacatatttgccccaaattactattttcttcccaaatgaagcattctaatttcaaagattcatctctatattctgacttcACAGCTTTTAACACTTAATGCTGttttttagttgaca-aataaaaattata-ttatagtatacaac-----gttttgaaatatatatacactgtggaatggttaaataaagctaa
i nomLeu3.chr11             C 0 C 0
s calJac3.chr9               77500649 239 - 124281992 CCTAACctcttcactcttcagacatgacgaaaaccaccgcagtctatacatatgccccaaattactattttcttcccaaataaaatattctaatttcaaaaattcatctctacattCTGACTCCACAAATTTTAGTACTTAATAATGTTTTTGTTTTTAGATGataaaaattatatttatagtatacaacatgatgttttgaaatatgtatacactgtggaatggttagagaaagctaa
i calJac3.chr9              C 0 C 0
e mm10.chr10                126904698 1071 + 130694993 I
e canFam3.chr10              67351645 620 -  69331447 I
e chlSab2.chr11              74689522   0 - 128539186 C
e papAnu2.chr11              78766351   0 - 132286798 C
e macFas5.chr11              80813529   0 - 137757926 C
e rheMac3.chr11              79713382   0 - 134985053 C

a score=14671.000000
s hg38.chr12_GL383550v2_alt    165491 16 +    169178 C--ATGTACCCTTCGGCT
s panTro4.chr12              31403829 16 + 134246214 C--ATGTACCCTTCGGCT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78613524 18 - 136387465 catatgtaCCCTTCGGCT
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54808793 18 + 123690457 cgtatgcaCCCTTCGGCT
i nomLeu3.chr11             C 0 C 0
s calJac3.chr9               77500888 18 - 124281992 catatgcaCCCTTCTGCT
i calJac3.chr9              C 0 C 0
s mm10.chr10                126905769 16 + 130694993 --CACGCGCCCTGCGGTA
i mm10.chr10                I 1071 I 1
s canFam3.chr10              67352265 16 -  69331447 --CGCGCGTCTTTCCGCT
i canFam3.chr10             I 620 C 0
e chlSab2.chr11              74689522  0 - 128539186 C
e papAnu2.chr11              78766351  0 - 132286798 C
e macFas5.chr11              80813529  0 - 137757926 C
e rheMac3.chr11              79713382  0 - 134985053 C

a score=1694.000000
s hg38.chr12_GL383550v2_alt    165507 1 +    169178 T
s panTro4.chr12              31403845 1 + 134246214 T
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78613542 1 - 136387465 T
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54808811 1 + 123690457 T
i nomLeu3.chr11             C 0 C 0
s macFas5.chr11              80813529 1 - 137757926 T
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78766351 1 - 132286798 t
i papAnu2.chr11             C 0 C 0
s calJac3.chr9               77500906 1 - 124281992 C
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67352281 1 -  69331447 T
i canFam3.chr10             C 0 C 0
e mm10.chr10                126905785 1 + 130694993 I
e chlSab2.chr11              74689522 0 - 128539186 C
e rheMac3.chr11              79713382 0 - 134985053 C

a score=96808.000000
s hg38.chr12_GL383550v2_alt    165508 25 +    169178 TTTAAAAACTAACGTCCAATTCATC
s panTro4.chr12              31403846 25 + 134246214 TTTAAAAACTAACGTCCAATTCATC
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78613543 25 - 136387465 TTTAAAAACTAACGTCCAATTCATC
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54808812 25 + 123690457 TTTAAAAACTAACGTCCAATTCATC
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79713382 25 - 134985053 tTTAAAAACTAACGTCCAATTCATC
i rheMac3.chr11             C 0 I 18
s macFas5.chr11              80813530 25 - 137757926 TTTAAAAACTAACGTCCAATTCATC
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78766352 25 - 132286798 tttaaaaactaacgTCCAATTCATC
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74689522 25 - 128539186 TTTAAAAACTAACGTCCAATTCATC
i chlSab2.chr11             C 0 I 18
s calJac3.chr9               77500907 25 - 124281992 TTTAAAAACTATCGTCCAATTCATC
i calJac3.chr9              C 0 C 0
s mm10.chr10                126905786 25 + 130694993 TTTTGCAACCAGCATCTGATCCACT
i mm10.chr10                I 1 I 16
s canFam3.chr10              67352282 19 -  69331447 ------TAATAATGTCTAATCCATC
i canFam3.chr10             C 0 C 0

a score=1215.000000
s hg38.chr12_GL383550v2_alt    165533 1 +    169178 C
s panTro4.chr12              31403871 1 + 134246214 C
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78613568 1 - 136387465 C
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54808837 1 + 123690457 C
i nomLeu3.chr11             C 0 C 0
s macFas5.chr11              80813555 1 - 137757926 T
i macFas5.chr11             C 0 I 17
s papAnu2.chr11              78766377 1 - 132286798 T
i papAnu2.chr11             C 0 I 17
s calJac3.chr9               77500932 1 - 124281992 T
i calJac3.chr9              C 0 I 16
s mm10.chr10                126905827 1 + 130694993 C
i mm10.chr10                I 16 C 0
s canFam3.chr10              67352301 1 -  69331447 C
i canFam3.chr10             C 0 C 0
e chlSab2.chr11              74689547 18 - 128539186 I
e rheMac3.chr11              79713407 18 - 134985053 I

a score=856703.000000
s hg38.chr12_GL383550v2_alt    165534 274 +    169178 ---------------AATTCCGTGAGAGTAAAGCCTTTGCTTAGCTTTCCAGTCCTGTTAAACGGGGGGGAAACAACAAAAGGGTCCTCAGGGCCCTGCCCAACAATA-CGCCACATTCTGTCTAGTAAAGCCACACAGCCAGAAAACGCCAGGTGACTGGCAGGCAGA----TACTTCCGGAAGAAGTCGGCCCTCCGAACCCGGAAGTGAAGCGATAAGACGCACGGTGTTCTGGGAGGAGTTACGCAGG----------CAGGGTTGTGGTTGCTGGCTGTTACCAGGACAACCGGAGGCG
s panTro4.chr12              31403872 273 + 134246214 ---------------AATTCCGTGAGAGTAAAGCCTTTGCTTAGCTTTCCAGTCCTGCTAAACGGGGGG-AGACAACAAAAGGGTCCTCAGGGACCTGCCCAACAATA-CGCCACATTCTGTCTAGCAAAGCCACACAGCCAGAAAACGCCAGGTGACTGGCAGGCAGA----TACTTCCGGAAGAAGTCGGCCCTCCGAACCCGGAAGTGAAGCGATAAGACGCACGGTGTTCTGGGAGGAGTTACGGAGG----------CAGGGTTGTGGTTGCTGGCTGTTACCAGGACAACCGGAGGCG
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78613569 273 - 136387465 ---------------AATTCCGTGAGAGTAAAGCCTTTGCTTAGCTTTCCAGTCCTGTTAAACGGGGGG-AAACAACAAAAGGGTCCTCAGGACTCTGCCCAACAATA-CGCCACACTCTGTCTAGCAAAGCCACACAGCCAGAAAACGCCAGGTGACGGGCAGGCAGA----TACTTCCGCAAGAAGTCAGCCCTCGGAACCCGGAAGTGAAGCGTTAAGACGCACAGTGTTCCGGGAGGAGTTACGGAGG----------CGGGATTGTGGTTGTTGGCTGTTACCAGGACAACCGGAGGCG
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54808838 273 + 123690457 ---------------AATTCCGTGAGAGTAAAGCCTTTGCTTAGCTTTCCAGTCCTGTTAAACGGGGGG-AAACAACAAAAGGGTCCCCAGGACCCTGCCCAACAATA-CGCCACACTCTGTCTAGCAAAGCCACACAGCCAGAAAACGCCAGGTGACTGGCAGGCAGA----TACTTCCGGAAGAAGTCGGCCCTCCGAGCCCGGAAGTGAAGCCATAAGACGCACAGGGTTCTGGGAGGAGTTACGGAGG----------CGGGATTGTGGTTGCTGGCTGTTACCAGGGCAACCGGAGGCG
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79713425 271 - 134985053 ---------------AATTCCCTGAGAGTAAAGCCTTTGCTTAGCTTTCCAGTCCCGTTAAACGGCGA--AAAGAACAAAAGGGTCCCCAGGACCCTGCCCAACGATA-CGCCACACTCTGTCTACCAAAGCCACCCAGCCAGAACACGCCAGGTGACTGGCAGGCAGA----TACTTCCGGAAGAAGTCGGTCCTCCGAACCTGGAAGTGAAGC-AGAAGACGCACAGTATTCTGGGAGGAGTTAGGAAGG----------CGGGATTGTTGTTGCTGGCTGTTACCAGGACAACCGGAGGCG
i rheMac3.chr11             I 18 C 0
s macFas5.chr11              80813573 271 - 137757926 ---------------AATTCCCTGAGAGTAAAGCCTTTGCTTAGCTTTCCAGTCCCGTTAAACGGCGA--AAAGAACAAAAGGGTCCCCAGGACCCTGCCCAACGATA-CGCCACACTCTGTCTACCAAAGCCACCCAGCCAGAACACGCCAGGTGACTGGCAGGCAGA----TACTTCCGGAAGAAGTCGGTCCTCCGAACCTGGAAGTGAAGC-AGAAGACGCACAGTATTCTGGGAGGAGTTAGGAAGG----------CGGGATTGTCGTTGCTGGCTGTTACCAGGACAACCGGAGGCG
i macFas5.chr11             I 17 C 0
s papAnu2.chr11              78766395 271 - 132286798 ---------------AATTCCCTGAGAGTAAAGCCTTTGCTTAGCTTTCCAGTCCCGTTAAACGGCGA--AAAGAACAAAAGGGTCCCCAGGACCCTGCCCAACGATA-CGCCACACTCTGTCTACCAAAGCCACCCAGCCAGAACACGCCAGGTGACTGGCAGGCAGA----TACTTCCGGAAGAAGTCGGTCCTCCGAACCTGGAAGTGAAGC-AGAAGACGCACAGTATTCTGGGAGGAGTTAGGGAGG----------CGGGATTGTTGTTGCTGGCTGTTACCAGGACAACCGGAGGCG
i papAnu2.chr11             I 17 C 0
s chlSab2.chr11              74689565 271 - 128539186 ---------------AATTCCCTGAGAGTAAAGCCTTTGCTTAGCTTTCCAGTCCCGTTAAACGGGGA--AAAGAACAAAAGGGTCCCCAGGACCCTGCCCAACAATA-CGCCACACTCTGTATACCAAAGCCACCCAGCCAGAACACGCCAGGTGACTGGCAGGCAGA----TACTTCCGGAAGAAGTCGGTCCTCCGAACCTGGAAGTAAAGC-AGAAGACGCACAGTATTCTGGGAGGAGTTAGGGAGG----------CGGGATTGTCGTTGCTGGCTGTTACCAGGACAACCGGAGGCG
i chlSab2.chr11             I 18 C 0
s calJac3.chr9               77500949 250 - 124281992 ---------------AATTCCGTGAGAGTAAAGCCTTTGCTTAGCTTTCCAGTCCTGTTAAACGGTGAG-A---AACAAAAGGGTCCCCATGAGCCTGCCCAACAAGA-CGCCACG--------------------AAGCCAGAAAACGCCAGGTGACCTCCAGGCAGA----CACTTCCGGAAGAAATCGGCTCACGGAACCTGGAAGTGAAGACAGAAAACGCACAGCATTCTGGGAAGAGTTACGGAGG----------CGGAATTGTGTTTGCTGGCTGTTACCAGGACAACCGGAGGCG
i calJac3.chr9              I 16 C 0
s mm10.chr10                126905828 225 + 130694993 ---------------AATTCGGGGAAAACATAGCATTTCCTTATTTCGCTAATAACTGCGAAGGTTCGG-AGCGAATCCAATCGCCC----GAAGCTGCGCAGGAAAAGTGCCACACGCTGTC------------------------CACCAAGCGGCCTGCCAATACT----CGCTTCCGGAAGGAGCC------CTAGTACCGGAAGT-AGGC----AGGCGCGCGGAATTTTGGGAAGAGTTGACCTGG----------CG----------CTTTAGCTGTTACCAAGGCAACCGGAGGCG
i mm10.chr10                C 0 I 29
s canFam3.chr10              67352302 268 -  69331447 ACCGAGGCCAACAAGAATTCGGTGAGTTTACAGCCTTTCCGCAGCTTTCCCGCCATTTTGAACGCGGGG-AAACAACAAACCAGCCGCCGTCACCCTCCGCGCTCAGA-GGCC----------------------------------CCTCCGGCCGCCGTCAGACAGGACTCTACTTCCGGAAGGAGCCTGCCCTCCCCACCGGAAGCGGAAGAGAGACGGCGCGCGGCATTCTGGGAAGACCTACGGAAGCCGGGCGGCTCGGGGCGGGGGTTGCTGGCTGTTACCGGGGCAACTAGAAGCG
i canFam3.chr10             C 0 C 0

a score=705268.000000
s hg38.chr12_GL383550v2_alt    165808 216 +    169178 ATTGACCGTTATCTGCGGTTTGGAGCCGTTA-GCGGGAGAGGCAGAGATATTCAGAGGTCTTTTAGGATGCGCTAAAGGGTCGTGAGGGCTCTCT----TAAAATTTTCTTCACAAGCGGTTATCCAGTCGTGCCCCGCGGCCCTGCTGCTGGCCCCGGGGATCTGAGTCGTACCCTC-TTGTTTTTCTCTGAGTCAGTCTTAAGGTGAAATGAAGTGTGGC
s panTro4.chr12              31404145 216 + 134246214 ATTGACCGTTATCTGCGGTTTGGAGCCGTTA-GCGGGAGAGGCAGAGATATTCAGAGGTCTTTTAGGATGCGCTAAAGGGTCGTGAGGGCTCTCT----TAAAATTTTCTTCACAAGCGGTTATCCAGTCGTGCCCCGCGGCCCTGCCGCTGGCCCCGGGGATCTGAGTCGTACCCTC-TTGTTTTTCTCTGAGTCAGTCTTAAGGTGAAATGAAGTGTGGC
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78613842 216 - 136387465 ATTGACCGTTATCTGCGATTTGGAGCCGTTA-GCGGGAGAGGCAGAGACGTTCAGAGGTCTTTTAGGATGCGCTAAAGGGTCGTGAGGGCTCTCT----TAAGATTTTCTTCACAAGAGGTTATCCAGTCGTGCCCCGCGGCCCAGCCGCTGGCCCCGGGGATCTGAGTCGTACCCTC-TTGTTTTTCTCTGAGTCAGTCTTAAGGTGAAATGAAGTGTGGC
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54809111 216 + 123690457 ATTGACCGTTATCTGCGGTTTGGAGCCGTTA-GCGGGAGAGGCAGAAATGTTCAGAGGTCTTTTAGCATGTGCTAAAGGGTCGTGAGGGCTCTCT----TAAGATTTTCTTCACAAAAGGTTATCCAGTTGTGCCCCGCGGCCCAGCCGCTGGCCCCGGGGATCTGAGTCGTACCCTA-TTGTTTTTCTCTGAGTCAGTCTTAAGGTGAAATGAAGTGTGGC
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79713696 217 - 134985053 ATTGACCGTTATCTGCGGTTTGCAGCCGTTA-GCGGGAGAGGCAGAGAAGTTCAGAGGTCTTTTAGGATGTGCTAAAGGGTCGTGAGGGCTCTCT----CAAGATTTTCCTCACAATAGGTTATCCAGTCGTGCCCCTTGGCCCAGCCGCTGGCCCCGGGGATCTGAGTCGCACCCTCTTTGTTTTTCTCTGAGTCTGTCTTAAGGTGAAATGAAGTGTGGC
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80813844 217 - 137757926 ATTGACCGTTATCTGCGGTTTGCAGCCGTTA-GCGGGAGAGGCAGAGAAGTTCAGAGGTCTTTTAGGATGTGCTAAAGGGTCGTGAGGGCTCTCT----CAAGATTTTCCTCACAATAGGTTATCCAGTCGTGCCCCTTGGCCCAGCCGCTGGCCCCGGGGATCTGAGTCGCACCCTCTTTGTTTTTCTCTGAGTCTGTCTTAAGGTGAAATGAAGTGTGGC
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78766666 216 - 132286798 ATTGACCGTTATCTGCGGTTTGCAGCCGTTA-GCGGGAGAGGCAGAGAAGTTCAGAGGTCTTTTAGGATGTGCTAAAGGGTCGTGAGGGCTCTCT----TAAGATTTTCCTTACAATAGGTTATCCAGTCGTGCCCCTTGGCCCAGCTGCTGGCCCCGGGGATCTGAGTCGCACCCTC-TTGTTTTTCTCTGAGTCTGTCTTAAGGTGAAATGAAGTGTGGC
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74689836 216 - 128539186 ATTGACCGTTATCTGCGGTTTGCAGCCGTTA-GCGGGAGAGGCAGAGAAGTTCAGAGGTCTTTTAGGATGTGCTAAAGGGTCGTGAGGGCTCTCT----TAAGATTTTCCTCACAATCGGTTATCCAGTCGTGCCCCTTGGCCCAGCCGCTGGCCCCGGGGATCTGAGTCGCACCCTC-TTGTTTTTCTCTGAGTCTGTCTTAAGGTGAAATGAAGTGTGGC
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77501199 212 - 124281992 ATTGACCGTTATCTGCGGTTTGGAGCCGTTA---GGGAGAGGCGGAGATGTTCAAAGGTCTTTTAGGATGAGCTAAAGGGTCGTGAGGGCTCTCT----TAAGATTATCTTAACAAGAGGTTATCCAGTCGTGACCCGTGCCCCAGCCGCTGGACCAGGGGATCTGAGTCGCCCTCTC-TTGTTTT--CCTGAGTCAGTCTTAAGGTGAAATGAAGTGTGGC
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67352570 201 -  69331447 ATTGGCGGTTTTCCGCAGTTTGAAGCGGTTAAGCGGCAGAGGCTGAGATGCTCGGAGGTC-TTTGGGGTGAGCGAAAAGGGCCTGAGGGC---CTAAGAGAAGACTGTCCTATCAGGAGGTTATCCGGTCGTGCCC---------GCGGCGGGAACACCTGTCCTGGGTCGCGCCCAC-CCGGCTCTTGC-------GCGTTGCCCTGGAAGTAAGTGTGGC
i canFam3.chr10             C 0 C 0
e mm10.chr10                126906053  29 + 130694993 I

a score=1008466.000000
s hg38.chr12_GL383550v2_alt    166024 311 +    169178 CCAGTGGCTCCTCACTGTCGCTTCTCTAGTTTTCTGCCTCCTTTTAGAAAATGTAAGTTGAGAA----TTTCTAATTTACATCGGGATGTGTTCT------AATGCG----CTTGTTTTTAAAACTGTGGAAAA-TTTTTAAAAGAAAATAAATCTCACCAGTCAT-CCAGCTACCCAGAAGT-------AACATTTTCATGCATTACCTAT--TAATTTTTTTCTCTGC----------------ATATTTTTTCATAGTTGAGATAATTTAGGGAAAACCATTTTGTGTCCTT-------------------CATATATGGA--TGAATAC---------------------AATATAATTTTGGTATTAATATCATAGCAACAAAGAAGGC
s panTro4.chr12              31404361 311 + 134246214 CCAGTGGCTCCTCACTGTCGCTTCCCTAGTTTTCTGCCTCCTTTTAGAAAATGTAAGTTGAGAA----TTTCTAATTTACATCGGGATGTGTTCT------AATGCG----CTTGTTTTTAAAATTGTGGGAAA-TTTTTaaaagaaaataaatctcaccagtcat-ccagctacccagaagt-------aacattttcatgcattacctat--taatttttttctctgc----------------atatTTTTTCATAGTTGAGATAATTTAGGGAAAACCATTTTGTGTCCTT-------------------CATATATGGA--TGAATAC---------------------AATATAATTTTGGTATTAATATCATAGCAACAAAGAAGGC
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78614058 314 - 136387465 CCAGTGGCTCCTCACTGTCGCTTCTCTAGTTTTCTGCCTCGTTTTAGAAAATGTAAGTTGAGAA----TTTCTAATTTACATCGGGATGTGTTCT------AATGCG----CTTGTTTTTAAAATTGTGGAAAA-TTTTTAAAATTTtaaaaatctcaccagtcat-ccagctacccagaagt--aac--aacattttcatgcattacctat--taatttttttctctgc----------------atatTTTTTCATGGTTGAGATAATTTAGGGAAAACCATTTTGTGTCCTG-------------------CATATATGGA--TGAATAC---------------------AATATAATTTTGGTATTAATATCATAGCAACAAAGAAGGC
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54809327 310 + 123690457 CTAGTGGCTCCTCACTGTCACTTCTCTAGTTTTCTGCCTCCTTTTAGAAAATTTAAGTTGAGAA----TTTCTAATATACATCGGGATGTGTTCT------AATGCG----CTTGTTTTTAAAATTGTGgaaaa-tttttaaaaga----aaatctcaccagtcat-ccagctacccagaagt--aac--aacgttttcatgcattacctat--taattgttttctctgc----------------atattttttcatggttgggataatttagggaaaaccattttgtgtcctg-------------------cATATATGGA--TGAATAC---------------------AATATAATTTTGGTATTAATGTCATAGCAACAAAGAAGGC
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79713913 303 - 134985053 CCAGTGGCTCCTCATTGTCGCTTCTCTAGTTTTCTGCCTCCTTTTAGAAAATGTAAGTTGAGAA----TTTCTAATTTACATCGAGATGTGTTCT------AATGCG----CTTGTTTTTAAAATTGTGTAAAACTTTTTAAAAGAAAATAAATCTCACCAGTCAT----------CAGAAGT--AAC--AAAATTTTCATGCATTACCTAT--TAATTTTTT--TCTGC----------------ATATTTTTTCATAGTTGAGATAATTTAGGG-AAACCATTTTGTGTCCTG-------------------CATATATGAG--CGAATAC---------------------AATATAATTTTGGTATCAATATCATAGCAACAAAGAAGGC
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80814061 303 - 137757926 CCAGTGGCTCCTCATTGTCGCTTCTCTAGTTTTCTGCCTCCTTTTAAAAAATGTAAGTTGAGAA----TTTCTAATTTACATCGAGATGTGTTCT------AATGCG----CTTGTTTTTAAAATTGTGGAAAACTTTTTAAAAGAAAATAAATCTCACCAGTCAT----------CAGAAGT--AAC--AAAATTTTCATGCATTACCTAT--TAATTTTTT--TCTGC----------------ATATTTTTTCATAGTTGAGATAATTTAGGG-AAACCATTTTGTGTCCTG-------------------CATATATGAG--CGAATAC---------------------AATATAATTTTGGTATCAATATCATAGCAACAAAGAAGGC
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78766882 303 - 132286798 CCAGTGGCTCCTCATTGTCGCTTCTCTAGTTTTCTGCCTCCTTTTAGAAAATGTAAGTTGAGAA----TTTCTAATTTACATCGAGATGTGTTCT------AATGcg----cttgtttttaaaattgtggaaaactttttaaaagaaaataaatctcacCAGTCAT----------CAGAAGT--AAC--AAAATTTTCATGCATtacctat--taatttttt--tctgc----------------atattttttcATAGTTGAGATAATTTAGGG-AAACCATTTTGTGTCCTG-------------------CATATATGAG--CGAATAC---------------------AATATAATTTTGGTATCAATATCATAGCAACAAAGAAGGC
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74690052 303 - 128539186 CCAGTGGCTCCTCATTGTCGCTTCTCTAGTTTTCTGCCTCCTTTTAGAAAATGTAAGTTGAGAA----TTTCTAATTTACATCGGGATATGTTCT------AATGCG----CTTGTTTTTAAAATTGTGGAAAACTTTTTAAAAGAAAATAAATCTCATCAGTCAT----------CAGAAGT--AAC--AAAATTTTCATGCATTACCTAT--TAATTTTTT--TCTGC----------------ATATTTTTTCATAGTTGAGATAATTTAGGG-AAACCATTTTGTGTCCTG-------------------CATATATGGG--CGAATAC---------------------AATATAATTTTGGTATCAATATCATAGCAACAAAGAAGGC
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77501411 304 - 124281992 CCCGTGACT--TCACTGTCGCTTTTCTAGTTTTCTGTCTTCTTTTAGAAAATGTAAGTTGAGAA----TTTCTAATTTACATCGGGATGTGTTCT------AATGCG----CTTGTTTTTAAAATTGTGGAAAA-TTTAAAAAAGAAAATAAATCTCACCAGTCAT-CCAGCTACCCAGAA------C--AAAATTTTCATATATTACCTAT--TAATTTTTTTCTCTGC------------------ATTATTTTATAGTTGAGATGATTTAGGGAAAACCATTTTGTGTTCTG-------------------CATATACGTA--TGAATAC---------------------GATATAATTTTGGGATTCATATC--AGCAACAAAGAAGGC
i calJac3.chr9              C 0 C 0
s mm10.chr10                126906082 315 + 130694993 CTGGTAGCTTCTCGCTGTC-------------TCTGCCTCCTTTTTAAAAATATAAATTGAGGATTTTTTTTTAAGTTACAGACCACTGTGTTCT------AATGTAAAGTATTCTTTTTTCAACTGTGCAAGT-----TAAAAAAAAAA-----TCGTTAGCTAT-CCAGTTACCCAGAGGCAGAGT--AAA----------ATTACCTATCATGGTTTTTTTCCCCCCCCCCCCGTCTATAGTAACATTTTTGCATTGTCTAGCTGATTTCAGGAAACTAATCTTGCTCCTTT-------------------CATATATGTATGTGAATGT-------TGTA----------ACTATAACTCTGATATTAAAATCTCCGAGACAAA-AAGAT
i mm10.chr10                I 29 C 0
s canFam3.chr10              67352771 364 -  69331447 CCAGGGGCTCC----TGCCGCTTCTCTGATCTTCTTCCGCCTTTTAGAAAACCTAAGTTGGCAA----TTGCAATATTACATTGCAGTGTGTTCTGACAGCAAAGTA----CATTTTTTTACAGTTGAGGAAAATTACAAAAGAAAAAAGAAAACTCACCAGTCATCCCAACTACCTAGCAGG--GACTTAAATTTTTCATGTATAATCTAT--CACTTTTTTCCCCAGC----------ACAAATATATTTTTTTACAGTTGAGTTTATTTGGGAACGATCATTTTATATCCTGCTTTGTATCATATATATCACAtatgtgta--tgtgtatgtatgtatgtatCATATATAGGATATAA--TTGCTGTTAAAATCTTAGCAACAAGGAAGGC
i canFam3.chr10             C 0 I 3932

a score=545724.000000
s hg38.chr12_GL383550v2_alt    166335 154 +    169178 ATTGAAGGC----TTTaaatctgtttacagtgaattgaaaagacaggatgaagtggacacagcatgtgaagacaattcttt-caagaagtttggctgtcaaggaaaacagagaatgtgagtagccaaagcagaatgaca-gtgaaagaaagaaattGGGA
s panTro4.chr12              31404672 154 + 134246214 ATTGAAGGC----TTTaaatctgtttacagtgaattgaaaagacaggatgaagtggacacagcatgtgaagacaattcttt-caagaagtttggctgtcaaggaaaatagagaatgtgagtagccaaagCAGAATGACA-GTGAAAGAAAGAAATTGGGA
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78614372 155 - 136387465 ATTGAAGAC----TTTaaatctgtttacagtgaattgaaaagacaggatgaagtggacacagcagatgaagacaattcttt-caagaagtttggctgtcaaggaaaatagagaatgtgagtagccaaagcagaatgacaggtgaaagaaAGAAATTGGGA
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54809637 155 + 123690457 ATTGAAGAC----TTTaaatctgtttacagtgaattgaaaagacaggataaagtggacacagcatgtgaagacaattcttt-caagaagtttggctgtcaaggaaaatagagaaTGTGAGTGGCCAAAGCAGAATGACAGGTGAAAGAAAGAAATTGGGA
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79714216 155 - 134985053 ATTGAAGAC----TTTaaatctgtttacagtgaattgagaagacaggatgaagtggacacagcatgtgaagacaattcttt-caagaagtttggctgtcaaggaaaatagagaatgtgagtagccgaaggagaaTGACAGGCGAAAGAAAGAAATTGGGA
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80814364 155 - 137757926 ATTGAAGAC----TTTaaatctgtttacagtgaattgagaagacaggatgaagtggacacagcatgtgaagacaattcttt-caagaagtttggctgtcaaggaaaatagagaatgtgagtagccgaaggagaaTGACAGGCGAAAGAAAGAAATTGGGA
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78767185 155 - 132286798 ATTGAAGAC----TTTAAATCTGTTTACAGTGAATTGAGAAGACAGGATGAAGTGGACACAGCATGTGAAGACAATTCTTT-CAAGAAGTTTGGCTGTCAAGGAAAATAGAGAATGTGAGTAGCCGAAGGAGAATGACAGGcgaaagaaagaaattggga
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74690355 155 - 128539186 ATTGAAGAC----TTTAAATCTgtttacagcgaattgagaagacaggatgaagtggacacagcatgtgaagacaattcttt-caagaagtttggctgtcaaggaaaatagagaatgtgagtagccgaaggagaaTGACAGGCGAAAGAAAGAAATTGGGA
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77501715 155 - 124281992 ATTGAAGAC----TTTGaatctgtttacagtgaattgaaaagacaggataaagtggacacagcatgtgaagacaattcttt-caagaagtttggctgtcaaggaaaatagagaatgtgagtagccagaggagaatgacaggtgaaagaaagaaattGGGA
i calJac3.chr9              C 0 C 0
s mm10.chr10                126906397 140 + 130694993 ATTGAGGCCCCAGTGTAAATCTGATTGTCCCGAGTT-----------------TGAATGCAGCACATGAAGACATTTCTTTCCAAGAGGTTTGACCGTAAAGGAAAAAAG---ATGTCAGTAGCCTGAGAAGAGTAACAAGCAAAAGAAAGAAATTGGAA
i mm10.chr10                C 0 I 1344
e canFam3.chr10              67353135 3932 -  69331447 I

a score=1756188.000000
s hg38.chr12_GL383550v2_alt    166489 591 +    169178  
s panTro4.chr12              31404826 594 + 134246214  
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78614527 597 - 136387465  
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54809792 590 + 123690457  
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79714371 596 - 134985053  
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80814519 596 - 137757926  
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78767340 596 - 132286798  
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74690510 597 - 128539186  
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77501870 591 - 124281992  
i calJac3.chr9              C 0 C 0
e mm10.chr10                126906537 1344 + 130694993 I
e canFam3.chr10              67353135 3932 -  69331447 I

a score=1030606.000000
s hg38.chr12_GL383550v2_alt    167080 292 +    169178 agctgtcccatctaaaactccagccaattcttg------caaaaataaggactcagtgttgc--------ctgatttttcaggagaaacaggaaaatcatatttttgataatattataca----aaacaaaacacctctactagctagatacaatttgtgggtcactaattttcaacctctgCTATAGGTGAAAGGACCTCAACAAGAGGGATAATTGCTTGAATT-AAAGAATTAAATATGAA-AAAGAGGAAGAAGTCAAAAAGAATACCAAGATTTCCCCTTGGTAATAAGAAGGAGTTAGTAACATTG
s panTro4.chr12              31405420 292 + 134246214 agctgtcccatctaaaactccagccaattcttg------caaaaataaggactcagtgttgc--------ctgatttttcaggagaaacaggaaaatcatatttttgataatattataca----aaacaaaacacctctactagctagatacaattcgtgggtcgctaattttcaacctctgCTATAGGTGAAAGGACCTCAACAAGAGGGATAATTGCTTGAATT-AAAGAATTAAATATGAA-AAAGAGGAAGAAGTCAAAAAGAATACCAAGATTTCCCCTTGGTAATAAGAAGGAGTTAGTAACATTG
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78615124 301 - 136387465 agctgtcccatctaaaactccagccaattcttg------caaaaataaggactcagtgttgccagatgttctgatttttcaggagaaacaggaaaatcatatttttgataatattacacaaaacaaacaaaacacctctactagctagatacaattcatgggtcactaattttcaacctctgCTGTAGGTGAAAGGACCTCAACAAAAGGGATAATTTCTTGAATT-AAAGAATTAAATATGAAGAAAGAGGAAGAAGTC----AGAATACCAAGATTTCCCCTTGGTAATAAGAAGGAGTTAGTAACATTG
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54810382 305 + 123690457 agctgtcccatctaaaactccagccaattctca------caaaaataaggactcagtgttgctagatgttctgatttttcaggagaaacaggaaaatcgtatttttgataatattatacaaaacaaacaaaacacctctactagctagatacaattcatgggtcactaattttcaacctctgCTATAGGTGAAAGGACCTCAACAAGAGGGATAATTGCTTGAATT-AAAGAATTAAATATGAAGAAAGAGGAAGAAGTCAAAAAGAATACCAAGATTTCCCCTTGGTAATAAGAAGGAGTTAGTAACATTG
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79714967 301 - 134985053 agctgtcccatctaaaactccagccagttcttg------caagaataaggattcagtgttgccagatattctgatttttcaggagaaacagaaaaatcatatttgcgataatattataca----aaacaaaacacctctactggctagatacaattcatgagtcactaattttcaacctctgCTATAGGTGAAAGGACCTCAACAAGAGGGATAATTGTTTGAATT-AAAGAATTAAGTATGAAAAAAGAGGAAGAAGTCAAAAAGAATACCAAGATTTCCCCTTGGTAATAAGGAGGAGGTAGTAACATTG
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80815115 301 - 137757926 agctgtcccatctaaaactccagccagttcttg------caagaataaggattcagtgttgccagatattctgatttttcaggagaaacagaaaaatcatatttgcgataatattataca----aaacaaaacacctctactggctagatacaattcatgagtcactaattttcaacctctgCTATAGGTGAAAGGACCTCAACAAGAGGGATAATTGTTTGAATT-AAAGAATTAAGTATGAAAAAAGAGGAAGAAGTCAAAAAGAATACCAAGATTTCCCCTTGGTAATAAGGAGGAGGTAGTAACATTG
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78767936 301 - 132286798 AGCTGTCCCATCTAAAACTCCAGCCAGTTCTTG------CAAGAATAAGGATTCAGTGTTGccagatattctgatttttcaggagaaacagaaaaatcatattTGCGATAAtattataca----aaacaaaacacctctaCTGGCTAGATACAATTCATGAGTCACTAATTTTCAACCTCTGCTATAGGTGAAAGGACCTCAACAAGAGGGATAATTGTTTGAATT-AAAGAATTAAGtatgaaaaaagaggaagaagtcaaAAAGAATACCAAGATTTCCCCTTGGTAATAAGGAGGAGGTAGTAACATTG
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74691107 301 - 128539186 agctgtcccatctaaaactccagccagttcttg------caagaataaggattcagtgttgccagatattctgatttttcaggagaaacagaaaAATCATATTTGCAATAATATTATACA----AAACAAAACACCTCTACTGACTAGATACAATTCATGAGTCACTAATTTTCAACCTCTGCTATAGGTGAAAGGACCTCAACAAGAGGGATAATTGTTTGAATT-AAAGAATTAAGTATGAAGAAAGAGGAAGAAGTCAAAAAGAATACCAAGATTTCCCCTTGGTAATAAGGAGGAGGTAGTAACATTG
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77502461 308 - 124281992 agctgtcctatctaaaactccagacaattcttgtaattataaggataaggacccagtgttgccagatgttctcagttttcaggagaaacagggaaatcatatttttGATAATATTATACAAAACAAATAAAACATCTCTACTGGCTAGATACAATTCATTGGTCACTAATTTTCAACCTCTGCTATAGGTGAAAGGACATCAACAAGAGGGATAATTGTTTGAATT-AAAGAATTAAATATGAAGAAAAAAGAAGAAATCAAAAAGAATACCAAGATTTCCCCTTGGTAAT---GAGGAGATAGTAACATTG
i calJac3.chr9              C 0 C 0
s canFam3.chr10              67357067 275 -  69331447 agatgtcctatctaaaactccagccaatccttg------catgagtgaggacccaatgttgtcatgttttctgaattttcataagaaacaagaataccatatttttaggaatattatataaaagaaacaaaacacctctgctggctggatacagttcatggatcactaattttcaacctctgCTATAGATAAAAGGGCCTAAACAAAAATAATAAGTGTTTAAATGAAAAGAACTAAATATT-------------------------------AGATTTCCCCTAGGCAATGAGGGGGAGGCAGTAACATTA
i canFam3.chr10             I 3932 C 0
e mm10.chr10                126906537 1344 + 130694993 I

a score=730981.000000
s hg38.chr12_GL383550v2_alt    167372 192 +    169178 ------ATACTAAAATCAGCAGAAGGTTTGGGGAGAGAAGGTGCTTTATTGTGAGTTTCTTGAACATGGGGCAAACTT---ATTTATGTGTATCCATAGCACATGAATCCAATTCAGCTGCTGGATTTGAGAAATCTGTGGGATTTATCAGGG-GAAA-GGGCGCAGG-AATGTAGGTCAGGAGTTTGGGGAAAGAAGATGAAA
s panTro4.chr12              31405712 190 + 134246214 ------ATACTAAAATCAGCAGAAGGTTTGGGGAGAGAAGGTGCTTTATTGTGAGTTTCTTGAACATGGGGCAAACTT---ATTTATGTGTATCCATAGCACATGAATCCAATTCAGCTGCTGGATTTGAGAAATC--TGGGATTTATCAGGG-GAAA-GGGTGCAGG-AATGTAGGTCAGGAGTTTGGGGAAAGAAGATGAAA
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12              78615425 192 - 136387465 ------ATACTAAAATCAGCAGAAGGTTTGGGGAGAGAAGGTGCTTTATTGTGAGTTTCTTGAACATGGGGCAAACTT---ATTTATGTGTATCCATAGCACATGAATCCAATTCAGCTGCTGGATTTGAGAAATCTGTGGGATTTATCAGGG-GAAA-GGGTGCAGG-AATGTAGGTCAGGAGTTTGGGGAAAGAAGATGAAA
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11              54810687 192 + 123690457 ------ATACCAAAATCAGCAGAAGGTTTGGGGAGAGAAGGTGCTTTATTGTGAGTTTCTTGAACATGGGGCAAACTT---ATTCATGTGTATCCATAGCACATGAATCCAATTCAGCTGCTGGATATGAGAAATCTGCGGGATTTATCAGGG-GAAA-GGGTGCAGG-AATGTAGGTCAGGAGTTTGGGGAAAGAAGATGAAA
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11              79715268 193 - 134985053 ------GTACTAAAATCAGCAGAAGGTTTGGGGAGAGAAGGTGCTTGATTGTGAGTTTCTTGAACATGGGGCAAACTT---ATTCATATGTATCCATAGCACATGAATCCAGTTCAGCTGTTGGGTTTGAGAAATCTGTGGGATTTATCAGGG-AAAAGGGGTGCGGG-AATGTAGGTCAGGAGTTTGGGGAAAGAAGATGAAA
i rheMac3.chr11             C 0 C 0
s macFas5.chr11              80815416 192 - 137757926 ------ATACTAAAATCAGCAGAAGGTTTGGGGAGAGAAGGTGCTTGATTGTGAGTTTCTTGAACATGGGGCAAACTT---ATTCATATGTATCCATAGCACATGAATCCAGTTCAGCTGTTGGGTTTGAGAAATCTGTGGGATTTATCAGGG-AAAA-GGGTGCAGG-AATGTAGGTCAGGAGTTTGGGGAAAGAAGATGAAA
i macFas5.chr11             C 0 C 0
s papAnu2.chr11              78768237 192 - 132286798 ------ATACTAAAATCAGCAGAAGGTTTGGGGAGAGAAGGTGCTTGATTGTGAGTTTCTTGAACATGGGGCAAACTT---ATTCATATGTATCCATAGCACATGAATCCAGTTCAGCTGTTGGGTTTGAGAAATCTATGGGATTTATCAGGG-AAAA-GGGTGCAGG-AAtgtaggtcaggagtttggggaaagaagatgaaa
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11              74691408 188 - 128539186 ------ATACTAAAATCAGCAGAAGGTTTGGGGAGAGAAGG----TGATTGCGAGTTTCTTGAACATGGGGCAAACTT---ATTCATATGTATCCATAGCACATGAATCCAGTTCAGCTGTTGGGTTTGAGAAATCTGTGGGATTTATCAGGG-AAAA-GGGTGCAGG-AATGTAGGTCAGGAGTTTGGGGAAAGAAGATGAAA
i chlSab2.chr11             C 0 C 0
s calJac3.chr9               77502769 176 - 124281992 ------ATACTAAAATTAGCAGAAGGTTTGGGGAGAGAAGGTTCTTGATTGTGAGTTTCTTCAACATGGGGCAAACT-------------------TAGAACATGAATCCAGTTTAGCTGTTGGGTTTGAGAAATCTGTGGGATTTATCAGGG-GAAA-GTGTACAGG-AATGTAGGTCAGGAGTTTGGGGAGAGAAGATGAAA
i calJac3.chr9              C 0 C 0
s mm10.chr10                126907881 165 + 130694993 ------ATACTAAAATCACCAGAATATTTTGGGAAAGAG-----------GTGAGTTTTGTGGGCCAAGGGAAAATTT---ATTCTTGTGT---------------AGCCTGTTCAGCTGTTAAATTTCAAAATTCTCTAGGATTTAGT-GAG-GAAA-GGGTATGGG-CATAAAGGACCAGAATTTAGGGAAATAAGAGAAGA
i mm10.chr10                I 1344 N 0
s canFam3.chr10              67357342 201 -  69331447 AGATAAATACTAAAATCAGTAGAAGGTTT--GGAGGGAAGGTACTTGGCTGTGAGTTTTTTGAATACAGGACAAACTTCTCAGTCATAGATGTCCACAGCACATGAATCAAATTAAGCTGTTGAGTTTGAGAAATCTATGAGATTTATCAGGGCAAAA-AGGTGCAGGAAATAGAAGACAGGAGTTTGGGGAGAGAGGATAAAA
i canFam3.chr10             C 0 C 0

a score=779353.000000
s hg38.chr12_GL383550v2_alt   167564 232 +    169178 AAGGAGTTTAAGATGTAAGATTCATTCTTTCAATAAAGTTTTATtgattatatatcacaatatgtat------tttcacgagactctaaactgtctgagggcagaaagcacggggttttttttaaccacttacccagctcctagcacaatacatagtcagtgctt-atgtatgttgaaaaaacaaatGAAAAAATACAAAACACTGTGCTTTACAGTATAGGAGATGCAGAGTTGAATT
s panTro4.chr12             31405902 232 + 134246214 AAGGAGTTTAAGATGTAAGATTCATTCTTTCAATAAAGTTTTATTGATTATATATCACAATATGTAT------TTTcacgagactctaaactgtctgagggcagaaagcacggggttttttttaaccacttacccagctcctagcacaatacatagtcagcgctt-atgtatgttgaataaacaaatGAAAAAATACAAAACACTGTGCTTTACAGTATAGGAGATGCAGAGTTGAATT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12             78615617 231 - 136387465 AAGGAGTTTAAGATGTAAGATTCATTCTTTCAATAAAGTTTTATTGATTATATATCACAATATGTAT------TTTcacgagactctcaactgtgtgagggcagaaagcac-ggtttttttttaaccacttacccagctcctagcacaatacatagtcagtactt-atgtatgttgaataaacaaatGAAAAAATACAAAATGCTGTGCTTTACAGTATAGGAGATGCACCGTTGAATT
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11             54810879 231 + 123690457 AAGGAGTTTAAGATGTAAGATTCATTCTTTCAGTAAAGTTTTATTGATTATATATCACAATATGTAT------TTTcacaagactctcaactgtctgagggcagaaagcac-ggtttttttttaaccacttacccagctcctagcacaatacatagtctatgctt-aagtatgttgaataaacaaatGAAAAAATACAAAACATTGTGCTTTACATTATAGGAGATGCAGAGTTGAATT
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11             79715461 230 - 134985053 AAGGAGTTTAAGATGTAAGATTCATTCTTTCAATAAAGTTTTATTGATTATATATCACAATATGTAT------TTTcacgagactctaaactgtctgagggcagaaaccac--ggttttttttaaccacttacccagctcctagcacaatacagagtcagtgctt-atgtatgctgaataaacaagtGAAAAAATACAAAACACAATGCTTTACAGTATAGAAGATGCAGAGTTGAATT
i rheMac3.chr11             C 0 C 0
s macFas5.chr11             80815608 230 - 137757926 AAGGAGTTTAAGATGTAAGATTCATTCTTTCAATAAAGTTTTATTAATTATATATCACAATATGTAT------TTTCATGAgactctaaactgtctgagggcagaaaccac--ggttttttttaaccacttacccagctcctagcacaatacagagtcagtgctt-atgtatgttgaataaacaaatGAAAAAATACAAAACACAATGCTTTACAGTATAGAAGATGCAGAGTTGAATT
i macFas5.chr11             C 0 C 0
s papAnu2.chr11             78768429 230 - 132286798 aaggagTTTAAGATGTAAgattcattctttcaataaagttttattaattatatatcaCAATATGTAT------TTTCATGAGACTCTAAACTGTCTGAGGGCAGAAACCAC--GGtttttttttACCACTTACCCAGCTCCTAGCACAATACAGAGTCAGTGCTT-ATGtatgttgaataaacaaatgaaaaaatacaaaacacagtgCTTTACAGTATAGGAGATGCAGAGTTGAATT
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11             74691596 230 - 128539186 AAGGAGTTTAAGATGTAAGATTCATTCTTTCAATAAAGTTTTATTAATTATATATCACAATATGTAT------TTTcatgagactctaaactgtctgagggcagaaaccac--ggttttttttaaccacttacccagctcctagcacaatacagagtcagtgctt-atgtatgttgaataaacaaatGAAAAAATACAAAACACAGTGCTTTACAGTATAGGAGATGCAGAGTTGAATT
i chlSab2.chr11             C 0 C 0
s calJac3.chr9              77502945 222 - 124281992 AAGGAGTTAAAGATGTAAGATTCATTCTT----TAAAGTTTTATTGATTATATAACACAATATGTAT------Tttcacaagactctcaactgtctgaaggcagaaaccac-----tttttttcacca-ttacccagctcctagcacaatacatagtcagtgctt-atgtatgttgaataactaaatGAAAAAATACAAAACACTGTGTATTACAGTATGCAAGATGCAGAGTTGAATT
i calJac3.chr9              C 0 C 0
s canFam3.chr10             67357543 228 -  69331447 CAGGAGTTAAAGATGTAAGATTCATTCTCTC---AAAGTTtcattaaacatatatcacaatatgtatttgttatttcttaagactataaattctatgagggcagaaaccaggtatgtgtttttcaccacttagccagcacctagcataacgcatggtaggtgcttaatgtatgttgaataaatACT---AAATATACCA-----TGTGCTTCACAGTATACAAGGTACAGGGTTGAATT
i canFam3.chr10             C 0 C 0

a score=520048.000000
s hg38.chr12_GL383550v2_alt   167796 176 +    169178 AGAAAATCTTaagggaacaagaaacactggggtctgcttgagggtggagggtgggagcatgcagaggagcagaaaaaa-taactattgggtactaggcttaatacgtgggtgatgaaataatctttacaacaaaccttcatgtgtacccccaaacctaaaataaaagtttaaaaaGA
s panTro4.chr12             31406134 176 + 134246214 AGAAAATCTTaagggaacaagaaacactggggtctacttgagggtggagggtgggagcatgcagaggagcagaaaaaa-taactattgggtactaggcttaatacgtgggtgatgaaataatctttacaacaaaccttcatgtgtacccccaaacctaaaataaaagtttaaaaaga
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12             78615848 176 - 136387465 AGAAAATCTTaagggaacaagaaacactggggtctacttgagggtggaggatgggagcatggagaggagcagaaaaaa-taactattgagtactaggcttaatacatgggtgatgaaataatctttgcaacaaaccttcatgtgtacccccaaacctaaaataaaagtttaaaaaga
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11             54811110 168 + 123690457 AGAAAATCTTaagggaacaagaaacactggggtctacttgaggg-------taggagcatggagaggagcagaaaaaa-taactattg-gtactaggcttaatacgtgggtgatgaaataatctttacaacaaaccttcacgtgtacccccaaacctaaaataaaagtttaaaaaga
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11             79715691 172 - 134985053 AGAAAATCTTaagggaacaagaaacactggggtctacttgagggtggagggtgggagcatggagaggagcagaaaaaa-----tatggggtactaggcttaatacgtgggtgatgaaataatctttacaacaaaccttcatgtgtaccccgaaaactaaaataaaagttttaaaaga
i rheMac3.chr11             C 0 C 0
s macFas5.chr11             80815838 172 - 137757926 AGAAAATCTTaagggaacaagaaacactggggtctacttgagggtggagggtgggagcatggagaggagcagaaaaaa-----tatggggtactaggcttaatacgtgggtgatgaaataatctttacaacaaaccttcatgcgtacccccaaacctaaaataaaagttttaaaaga
i macFas5.chr11             C 0 C 0
s papAnu2.chr11             78768659 172 - 132286798 AGAAAATCTTAAGGGAACAAGaaacactggggtctacttgagggtggagggtgggagcatggagaggagcagaaaaaa-----tatggggtactaggcttaatacgtgggtgatgaaataatctttacaacaaaccTTCATgcgtacccccaaacctaaaataaaagttttaaaaga
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11             74691826 172 - 128539186 AGAAAATCTTaagggaacaagaaacactggggtctacttgagggtggagggtgggagcatggagaggagcagaaaaaa-----tatggggtactaggcttaatacgtgggtgatgaaataatctttacaacaaaccttcatgcgtacccccaaacctaaaataaaagtttaaaaaga
i chlSab2.chr11             C 0 C 0
s calJac3.chr9              77503167 175 - 124281992 AGAAAATCTTaagggaacaagaaactctggggtctacttgagggtgaagggtgggagcatggagaggaggagaaaaaaataactattgggtactaggcttaatacgtgggggatgaaataatctttacaacaaacattcacatatacccc-aaacct-aaataaaagtttaaaaaga
i calJac3.chr9              C 0 C 0
e canFam3.chr10             67357771   0 -  69331447 C

a score=143073.000000
s hg38.chr12_GL383550v2_alt   167972 65 +    169178 AGAAAATCTTCTTAAAGAAGTTTATAGAGCAGGGGCCCCATCTCCTT-aaaaaaaaaaaaaa-----agaa
s panTro4.chr12             31406310 63 + 134246214 aGAAAATCTTCTTAAAGAAGTTTATAGAGCAGGGGCCCCATCTCCTT---AAAAAAAAAAAA-----AGAA
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12             78616024 65 - 136387465 aGAAAATCTTCTTAAAGAAG-TTATAGAGCAGGGGCCCCATCTCCTTaaaaaaaaaaaaaaa-----agaa
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11             54811278 58 + 123690457 agaaaATCTTCTTAAAGAAGTTTATAGAGCAGGGGCCCCATCTCCTT--------AAAAAAA-----AAAA
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11             79715863 56 - 134985053 aGAAAATCTTCTTAAAGAAGTTTATAGAGCAGGGGCCCCATCTCCTT-------AAAAA--------AAAA
i rheMac3.chr11             C 0 C 0
s macFas5.chr11             80816010 64 - 137757926 aGAAAATCTTCTTAAAGAAGTTTATAGAGCAGGGGCCCCATCTCCTT-------Aaaaaaaagaaagaaag
i macFas5.chr11             C 0 C 0
s papAnu2.chr11             78768831 55 - 132286798 agaaaatcttcttAAAGAAGTTTATAGAGCAGGGGCCccatctcctt-------aaaa---------aaaa
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11             74691998 59 - 128539186 agaaaATCTTCTTAAAGAAGTTTATAGAGCAGGGGTCCCACCTCCTT-------aaaaaaaa-----aaaa
i chlSab2.chr11             C 0 C 0
s calJac3.chr9              77503342 65 - 124281992 agaaaATCTTCTTAAAGAAGTTTATAGGGCAAGGGCCCCATATCCga-aagaaagaaaggaa-----agaa
i calJac3.chr9              C 0 I 129
s canFam3.chr10             67357771 20 -  69331447 AGAAAATGTTCTCAAAGAAG---------------------------------------------------
i canFam3.chr10             C 0 C 0

a score=721255.000000
s hg38.chr12_GL383550v2_alt   168037 243 +    169178 aaaggaaaaGCGACTTTATAGGCCAGAAAGTAAGACAAGTCTTAACACATAAGGAGCTAATGCAAGTTTTAAAGTAGTGCCATT------AAAAAAAAAAAAGTACCATGGGATTCAGAAGGGAAAGATCTTTTTAGAAGAAGTTAAGAAGTTAAGCTCTGTCTTTCTAGATAGTGGACAGTTAGGATTAGATCACACAGGTGTTGGGAGAGGAACTGATCAGAAGCAGTTAAATAGAAGATGTAggct
s panTro4.chr12             31406373 247 + 134246214 AAAGGAAAAGCGACTTTATAGGCCAGAAAGTAAGACAAGTCTTAACACATAAGGAGCTAATGCAAGTTTTAAAGTAGTGCCATT--AAAAAAAAAAAAAAAAGTACCATGGGATTCAGAAGGGAAAGATCTTTTTAGAAGAAGTTAAGAAGTTAAGCTCTGTCTTTCTAGATAGTGGACAGTTAGGATTAGATCACACAGGTGTTGGGAGAGGAACTGATCAGAAGCAGTTAAATAGAAGATGTAggct
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12             78616089 233 - 136387465 aaaggaaaaGCGACTTTATAGGCCAGAAAGT-----AAGCTCTTACACATAAGGAGCTAATGCAAGTTTTAAAGTAGTGCCATT---TAAAAAAAAAAAAAAGTACCATGGGATTCAGAAGGGAAAGATCTTTTTA--------TAAGAAGTTAAGCTCTGTCTTTCTAGATAGTGGATAGTTAGGATTAGATCACACAGGTGTTGGGAGAGGAACTGATCAGAAGCAGTTAAATAGAAGATGTAggct
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11             54811336 243 + 123690457 AAAGGAAAAGCGACTTTATAGGCCAAAAAGTAGGACAAGTCTT-ACACATAAGGAGCTAACGCAAGTTTTAAAGTAGTGCCATT-----AAAAAAAAAAAAAGTACCATAGGATTCAGAAGAGAAAGATCTTTTTAGAAGAAGTTAAGAAGTTAAGCTCTGTCTTTCTAGATAGTGGACAGTTAAGATTAGATCACACAGGTGTTGGGAGAGGAACTGATCAGAAGCAGTTATATAGAAGATGTAggct
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11             79715919 243 - 134985053 AAAGAAAAAGCGAGTTTATAGGTCAGAAAGTAAGACAAGTCTT-ACACATAAGCAGCTAATGCAAGTTTTAAAGTAGTGCCATT-----TAAAAACAAAAAAGTACCATGGGATTCAGAAGGGAAAGATCTTTTTAGAGGAAGTTAAGAAGTTAAGCTCCATCTTTCTAGATAGTGGCAAGTTAAGATTAGATCACACAGGTGTTAGGAGAGGAACTGGTCAGAAGCAGTTAAATAGAAGATGTAggcc
i rheMac3.chr11             C 0 C 0
s macFas5.chr11             80816074 243 - 137757926 aaagaaaAAGCGAGTTTATAGGTCAGAAAGTAAGACAAGTCTT-ACACATAAGCAGCTAATGCAAGTTTTAAAGTAGTGCCATT-----TAAAAACAAAAAAGTACCATGGGATTCAGAAGGGAAAGATCTTTTTAGAGGAAGTTAAGAAGTTAAGCTCCATCTTTCTAGATAGTGGCAAGTTAAGATTAGATCACACAGGTGTTAGGAGAGGAACTGGTCAGAAGCAGTTAAATAGAAGATGTAggcc
i macFas5.chr11             C 0 C 0
s papAnu2.chr11             78768886 243 - 132286798 aaagaaaaagcgaGTTTATAGGTCAGAAAGTAAGACAAGTCTT-ACACATAAGCAGCTAATGCAAGTTTTAAAGTAGtgccatt-----taaaaacaaaaaagtaccaTGGGATTCAGAAGGGAAAGATCCTTTTAGAGGAAGTTAAGAAGTTAAGCTCCATCTTTCTAGATAGTGGCAAGTTAAGATTAGATCACACAGGTGTTAGGAGAGGAACTGGTCAGAAGCAGTTAAATAGAAgatgtaggcc
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11             74692057 243 - 128539186 aaagaaaaaGCAAGTTTATAGGTCAGAAAGTAAGACAAGTCTT-ACACGTAAGCAGCTAATGCAAGTTTTAAAGTAGTGCTATT-----TAAAAACAAAAAAGTACCATGGGATTCAGAAGAGAAAGATCTTTTTAGAGGAAGTTAAGAAGTTAAGCTCCATCTTTCTAGATAGTGGGCAGTTAGGATTAGATCACACAGGTGTTAGGAGAGGAACTGATCAGAAGCAGTTAAATAGAAGATGTAggct
i chlSab2.chr11             C 0 C 0
s calJac3.chr9              77503536 229 - 124281992 aaagaaggaGC-AGCTTATAGGCCAGAAACTAAG----------ACACATAAGTAACTAATGCAAGTTTTAAAGTAGTGCCATT----TTTAAAAAAAACAACTACCATGGGATTCAGAAGGAAAAGATTGTTTTAGAAG-----AAGAAGTTAAGCTGTGTCTTTCTTGATaatagacagttaggattcaatcacatgggttttaggagaggaactgatcagaagcagttaaatagaggatgtaagcc
i calJac3.chr9              I 129 C 0
s canFam3.chr10             67357791 197 -  69331447 --------------CTGATAGGCTAGAAAATGA-------CTT-ATATATAA---------TTAAGTTTGAAAGTACTTCCATTTTTTTT--------AAAGGCACCATGCGATTCAGAAGAGAAAAAGTATTTTAAA-------AAGAAGTTACACTGGGGCTTT---GATAATGGATAGTTAAGA-TGGATCATGCAGATGTTGG--GAGGAACTGATCAGAAGCATGTACATTAAAGGTGCATACT
i canFam3.chr10             C 0 C 0

a score=344085.000000
s hg38.chr12_GL383550v2_alt   168280 108 +    169178 gggtgtggtggctcacacctgtaatcccagcactttgggaggctgaggtacgtggatcacttgaggtcaggagtttgagaccagcctggccaacatgacaaaaccccg
s panTro4.chr12             31406620 108 + 134246214 gggtgcggtggctcacacctgtaatcccagcactttgggaggctgaggtacgtggatcacttgaggtcaggagtttgagaccagcctggccaacatgacaaaaccccg
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12             78616322 108 - 136387465 gggtgcggtggctcacgcctgtaatcccagcactttgggaggctgaggtacatggatcacttgagatcaggagtttgagaccagcctggccaacatgacaaaaccccg
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11             54811579 108 + 123690457 gggtgcggtagctcacgcctgtaatcccagcactttgggaggctgaggtacgtggatcacttgaggtcaggagtttgagaccagcctggccaacatgacaaaacccca
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11             79716162 108 - 134985053 gggtgcggtggctcacacctgtaatcccagcactttgggaggctgaggtatatggatcacttgaggtcaggaattcgagaccagcctggccaacatgacaaaactccg
i rheMac3.chr11             C 0 C 0
s macFas5.chr11             80816317 108 - 137757926 gggtgcggtggctcacacctgtaatcccagcactttgggaggctgaggtacatggatcacttgaggtcaggaattcgagaccagcctggccaacatgacaaaactccg
i macFas5.chr11             C 0 C 0
s papAnu2.chr11             78769129 108 - 132286798 aggtgcggtggctcacacctgtaatcccagcactttgggaggctgaggtacatggatcacttgaggtcaggaattcgagaccagcctggccaacatgacaaaactccg
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11             74692300 108 - 128539186 gggtgcggtggctcacacctgtaatcccagcactttgagaggctgaggtacatggatcgcttgaggtcgggaattcgagaccagcctggccaacatgacaaaaccctg
i chlSab2.chr11             C 0 C 0
s calJac3.chr9              77503765 108 - 124281992 gggtgcagtggctcacatctgtaatcccagcactttgggagactgaggtgggtggatcacttgaggtcagaagtttgagaccagcctggccaacatgacaaaaccctg
i calJac3.chr9              C 0 C 0
e canFam3.chr10             67357988   0 -  69331447 C

a score=55842.000000
s hg38.chr12_GL383550v2_alt   168388 17 +    169178 tctctaccaaaaataca
s panTro4.chr12             31406728 17 + 134246214 tctctaccaaaaataca
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12             78616430 17 - 136387465 tctctaccaaaaataca
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11             54811687 17 + 123690457 tctctaccaaaaataca
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11             79716270 17 - 134985053 tctgtgccaaaaataca
i rheMac3.chr11             C 0 C 0
s macFas5.chr11             80816425 17 - 137757926 tctgtaccaaaaataca
i macFas5.chr11             C 0 C 0
s papAnu2.chr11             78769237 17 - 132286798 tctgtaccaaaaataca
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11             74692408 17 - 128539186 tctgtaccaaaaataca
i chlSab2.chr11             C 0 C 0
s calJac3.chr9              77503873 17 - 124281992 tctctactaaaaataca
i calJac3.chr9              C 0 C 0
s canFam3.chr10             67357988 17 -  69331447 TTTCTTCTAGAAGTAGA
i canFam3.chr10             C 0 C 0

a score=480247.000000
s hg38.chr12_GL383550v2_alt   168405 170 +    169178 aaaattagccgggtgtggtggcgcacacctgtaatcccagctacatgggaggctgaagcaagagaatcacttgagcaggggaggcagccactgccctccagcccgggcagcagagtgagactcttgtctc-----aaaaaaa--aaaaaaaaaaaaaaaGTGTATACCCTTCTTTTG
s panTro4.chr12             31406745 166 + 134246214 aaaattagccgggtgtggtggcgcacacctgtaatcccagctacatgggaggctgaagcaagagaatcacttgagcgggggaggcagccacggccctccagcccgggcagcagagtgagactcttgtctc---------aaa--aaaaaaaaaaaaaaaGTGTATACCCTTCTTTTG
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12             78616447 173 - 136387465 aaaattagccgggtgtggtggcgcacacctgtaatccaagctacatgggaggctgaggcaagagaatcacttgagcaggggaggcagccactgccctccagcccaggcagcagagtgagactcttgtctc--aaaaaaaaaa--aaaaaaaaaaaaaaaGTGTATACCCTTCTTTTG
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11             54811704 163 + 123690457 aaaattagctgggtgtggtggcacacacctgtaatcccagctacatgggaggctgaggcaagagaatcacttgagcaggggaggcagccactgccctccagcccaggcagcaaagtgagactc-tgtctc-----------a--aaaaaaaaaaaaaaaGTGTATACCCTTCTTTTG
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11             79716287 174 - 134985053 aaaattagccgggtgtggtggtgcacacctgtaatcccagctacatgggaggctgaggcaagagaatcacttgagcaggggaagcagccactgccctccagcctggggggcagagtaagactc-catctaaaaaaaaaaaaa--aagaagaagaagaaGATGTATACCCTTCTTTTG
i rheMac3.chr11             C 0 C 0
s macFas5.chr11             80816442 174 - 137757926 aaaattagccgggtgtggtgatgcacacctgtaatcccagctacatgggaggctgaggcaagagaatcacttgagcaggggaagcagccactgccctccagcctggggggcagagtaagactc-catctaaaaaaaaaaaaa--aagaagaagaagaaGATGTATACCCTTCTTTTG
i macFas5.chr11             C 0 C 0
s papAnu2.chr11             78769254 176 - 132286798 aaaattagccgggtgtggtggtgcacacctgtaatcccagctatatgggaggctgaggcaagagaatcacttgagcaggGGAagcagccactgccctccagcctggggggcagagtaagactc-catctaaaaaaaaaaaaaagaagaagaagaagaagatgtaTACCCTTCTTTTG
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11             74692425 174 - 128539186 aaaattagccgggtgtggtggtgcatacctgtaatcccagctacatgggaggctgaggcaagagaatcacttgagcaggggaagcagccactgccctccagcctggggggcagagtaagactc-tatctaaaaaaaaaaaaa--aagaagaagaagaaGATGTATACCCTTCTTTTG
i chlSab2.chr11             C 0 C 0
s calJac3.chr9              77503890 166 - 124281992 aaaattagctgggtgtggtggtgcacacctgtaatcccagctacatgggaggctgaggcaagagaatcgcttgaacatgggaggcagccactgccctccagtctgggtggcagagtgagactc-tgtctc-----aaaaaaa--aaaaaaaaatagaagatgtatacc---cttttg
i calJac3.chr9              C 0 C 0
e canFam3.chr10             67358005   0 -  69331447 C

a score=1450210.000000
s hg38.chr12_GL383550v2_alt   168575 439 +    169178 A----AAGTATTTGAAACTGCC---AAAAAAAAAAAAAAAAGAGTgaatagtgaaacagtttgaagccagaaccttgagaatcacccacatataaagaaggtgaagaagaaaaaccaacaaagtaaacagagaaaaagtcatcagaaagctaagagaaacatcaggagagtgggtttcataggaactaagattccgggtttcaagaaggaaagttctgtcaatattgtcaaatactacagagacagcaagccatcaaggagggtccaagttcattggatttgatgattaaggaaatcactgatgactttaaAC----------------AATTGGCCAATGAATATAAGAAGAGGAGGTATAAAAAGCAGTAGAATTGAAAGGCTTGTTGATTTGTTTAGGGAGGTGGGGAATGGGGTTCCTTAGGAGCAGGGGAAAAAAATAAAAGACAA---GATTAAGCTGC
s panTro4.chr12             31406911 436 + 134246214 A----AAGTATTtgaaactgcc-----aaaaaaaaaaaagagagtgaatagtgaaacagtttgaagccagaaccttgagaatcacccgcatataaagaaggtgaagaagaaaaaccaacaaagtaaacagagaaaaagtcatcagaaagctaagagaaacatcaggagagtgggtttcgtaggaactaagattccgggtttcaagaaggaaagttcagtcaatattgtcaaatactacagagacagcaagccatcaaggagggtccaagttcattggatttgatgattaaggaaatcactgatgactttaaac----------------aattgggcaatGAATATAAGAAGAGGAGGTATAAAAAGCAGTAGAATTGAGAAGCTTGTTGATTTGTTTAGGGAGGTGGGGAATGGGGTTCCTTAGGAGCAGGGG-AAAAAATAAAAGACAA---GATTAAGCTGC
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12             78616620 442 - 136387465 A----AAGTATTTGAAACTGCCAAAAAAAAAAAAAAAAAAAGAGTGAATAGTGAAACAGTTTGAAGCCACaaccttgagaatcacccacatataaagaaggtgaagaagaaaaaccaacaaagtaaacagagaaaaagtcatcagaaagctaagagaaacatcaggagagtgggtttcataggaactaagattccaggtttcaagaaggaaagttcagtcaatattgtcaaatactacagagacagcaagccatcaaggagggtccaggttcattggatttgatgattaaggaaatcactgatgactttaaAC----------------AATTGGCCAATGAATATAAGAAGAGGAGCTGTAAAAAGCAGTAGAATTGAGAGGCTTGTTGATTTGTTTAGGGAGGTGGGGAATGGGGTTCCTTAGGAGCAGGGGAAAAAAATAGAAGACAA---AATTAAGCTGC
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11             54811867 435 + 123690457 A----AAGTATTTGAAACTGCC--aaaaaaaaaaaaaaaaaaaGTGAATagtgaaacagtttgaagccagaaccttgagaatcacccacatataaagaaggtgaagaagaaaaaccaacaaagtaagcagagaaaaagtcatcagaaagctaagagaaacatcaggagagtgggtttcataggaactaagattccaggtttcaagaaggaaagttcagtcagtactgtcaaatactacagagacagcaagccatcaaggagggtccaagttcattggatttgatgattaaggaaatcattgatgactttaaAC----------------AACTGGCCAATGAATATAAGAAGACGAGCTGTAAAAAGCAGTAGAATTGAGAGGCTTGTTGATTTGTTTAGGGAGGTGGGGAATGGGGTTCCTTAGGAGCAGGGGAAAAAAATAGAAG--------ATTAAGCTGC
i nomLeu3.chr11             C 0 I 315
s rheMac3.chr11             79716461 429 - 134985053 AAAGTAAGTATTTGAAACTGCC--------AAAAAAAAAAAGAGTGAATagtgaaacagtttgaagccagaaccttgagaatcacccacatataaagaaggtgaggaagaaaaaccaacaaagtaaac--agaaaaagtcatcagaaagctaagagaaacatcaggagagtgggtttcacaggaactaagattccaggtttcaagaaggaacgttcagtcaatattgtcaaatactacagagacagcaagccatcaaggagggt-aaaggccattggatttgatgattaaggaaatcactgatgactttaaAC----------------AACTGGCCAATGAGTAT---AAGAGGAGCTTTAAAAAGCAGTAGAATTGAGAGGCTTGTTGATTTGTTTAGGGAGGTAGGGAATTGGGTTCCTTAGGAGCAGGGGGAAAAAAT---AGGCAA---GATTAAGCTGC
i rheMac3.chr11             C 0 C 0
s macFas5.chr11             80816616 433 - 137757926 AAAGTAAGTATTtgaaactgcc---------aaaaaaaaaagagtgaatagtgaaacagtttgaagccagaaccttgagaatcacccacatataaagaaggtgaggaagaaaaaccaacaaagtaaacagagaaaaagtcatcagaaagctaagagaaacatcaggagagtgggtttcacaggaactaagattccaggtttcaagaaggaacgttcagtcaatattgtcaaatactacagagacagcaagccatcaaggagggt-aaaggccattggatttgatgattaaggaaatcactgatgactttaaAC----------------AACTGGCCAATGAGTATAAGAAGAGGAGCTTTAAAAAGCAGTAGAATTGAGAGGCTTGTTGATTTGTTTAGGGAGGTAGGGAATTGGGTTCCTTAGGAGCAGGGGGAAAAAAT---AGGCAA---GATTAAGCTGC
i macFas5.chr11             C 0 C 0
s papAnu2.chr11             78769430 439 - 132286798 AAAGTAAGTATTTgaaactgcc------aaaaaaaaaaaaagagtgaatagTGAAACAGTTTGAAGCCAGAACCTTGAGAATCACCCACATATAAAGCAGGTGAGGAAGAAAAACcaacaaagtaaacagagaaAAAGTCATCAGAAAGCTAAGAGAAACATCAGGAGAGTGGGTTTCACAGGAACTAAGATTCCAGGTTTCAAGAAGGAAAGTTCAGTCAATATTGTCAAATCCTACAGAGACAGCAAGCCATCAAGGAGGGT-AAAGGCCATTGGATTTGATGATTAAGGAAATCATTGATGACTTTAAAC----------------AACTGGCCAATGAATATAAGAAGAGGAGCTTTAAAAAGCAGTAGAATTGAGaggcttgttgatttgtttaggGAGGTAGGGAATGGGGTTCCTTAGGAGCAGGGGGAAAAAATAGAAGGCAA---GATTAAGCTGC
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11             74692599 435 - 128539186 AAAGTAAGTATTtgaaactgcc----------aaaaaaaaagagtgaatagtgaaacagtttgaagccagaaccttgagaatcacccacatacaaagaaggtgaggaagaaaaaccaacaaagtaaacagagaaaaagtcatcagaaagctaagagaaacatcaggagagtgggtttcacaggaactaagattccaggtttcaagaaggaaagttcagtcaatattgtcaaatcctacagagacagcaagccatcaaggagggt-aaaggccattggatttgatgattaaggaaatcattgatgactttaaAC----------------AACTGGCCAATGAATATAAGAAGAGGAGCTTTAAAAAGCAGTAGAATTGAGAGGCTTGTTGATTTGTTTAGGGAGGTATGGAATGGGGTTCCTTAGGAGCAGGGGAAAAAAATAGAAGGCAA---GATTAAGCTGC
i chlSab2.chr11             C 0 C 0
s calJac3.chr9              77504056 424 - 124281992 aaagtcaatatttgaaactgcc--------------aaaaaaagtgaatagtgaaacaatttgaagccagaatttt--gaatcacccacatataaagaagatgaggaagagaaaccaacaaagtaaac------aaagtcatcagaaagctaagagaaacatctggagaatgcgtttcatagcaactaaggttccaggtttcaaaaaggaaagggcagccagtattgtcaaatactagagagacaggaagccatcaaggagaatccaaggcccttggatttgatgattaaggaaatcatttatgactttaaac----------------aaTTGGCTGATGACTATAAGAAGAGGAGCTTAAAAAAGCAGTAGAATTGAGAGGCTTATTGATTTGTTTAGGGAGGTAGGGAATGGGGTTCCATAGGTGCAGAGGAAGAAAATAGAAGGTGA---GATTAAGCTGC
i calJac3.chr9              C 0 C 0
s canFam3.chr10             67358005 434 -  69331447 ----GAAGTGTTTGCGACTGCC----------------aaatagggaatggagaaatagtttgaagccagaaccttgagaatcactcaaatgtaaagaaggtaaggaaggagaaccagcaaagtaaac--agaagaggttatcagaaagccaagcaaaacatcaggagagtgagttacatagaacttaaaatccc-tgtttcaagagaaagccgtcaatcggtattgtcaaatactatagagacagcaggccatcaaga------aagagccgttggatttagtga-caacgaaatcattgatgactttcaactaaacaacttcTTTATAGTTGACCAGTTACTAAAAGGAGAGGAGCGTAAAAGACTATTAGAATTAAGATACTT-TTGATTTGCTGAGGGAGGAAGGGAATGGAGTTACTTAGGAGCAGGGGGAAAACCTAGAAGAGGAGAGGATTAGGTTGC
i canFam3.chr10             C 0 I 3

a score=392709.000000
s hg38.chr12_GL383550v2_alt   169014 114 +    169178 AAAACAGGACAAATTTATGAAGCAAGATTTTGGAGAATCTAAGCAGTGATGAGATCAAGAAATGGAGGAAGAGTAACATCAAGAATAAGCATTATAATTCTAACAAATATTGTT
s panTro4.chr12             31407347 114 + 134246214 AAAACAGGACAAATTTATGAAGCAAGATTTTGGAGAATCTAAGCAGTGATGAGATCAAGAAATGGAGGAAGAGTAACATCAAGAATAAGCATTATAATTCTAACAAATATTGTT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12             78617062 114 - 136387465 AAAACAGGACAAATTTATGAAGCAAGATTTTGGAGAATCTAAGCAGTGATGAGATCAAGAAATGAAGGAAGAGTAACATCAAGAATAAGCATTATAATTCTAACAAATAGTGTT
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11             54812617 111 + 123690457 aaaaCAGGACAAATTTATGAAGCAAGATTTTGGAGAATCTAAGCAGTGATAAGATCAAGAAATGAAGGAAGAGTAACATCAAGAATAAGC---ATAATTCTAACAAATATTGTT
i nomLeu3.chr11             I 315 C 0
s rheMac3.chr11             79716890 114 - 134985053 AAAACAGGACAAATTTATGAAGCAAGGTTTTGGAGAATCTAAGTAGTAATGAGATCAAGAAATGAAGGAAGAGTAACATCAAGAATAAGCATTATAATTCTAACAAATATTGTT
i rheMac3.chr11             C 0 C 0
s macFas5.chr11             80817049 114 - 137757926 AAAACAGGACAAATTTATGAAGCAAGGTTTTGGAGAATCTAAGTAGTAATGAGATCAAGAAATGAAGGAAGAGTAACATCAAGAATAAGCATTATAATTCTAACAAATATTGTT
i macFas5.chr11             C 0 C 0
s papAnu2.chr11             78769869 114 - 132286798 AAAACAGGACAAATTTATGAAGCAAGGTTTTGGAGAATCTAAGTAGTAATGAGAtcaagaaatgaaggaagagtaACATCAAGAATAAGCATTATAATTCTAACAAATATTGTT
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11             74693034 114 - 128539186 AAAACAGGACAAATTTATGAAGCAAGGTTTTGGAGAATCTAAGTAGTaatgagatcaagaaatgaaggaagagtaacattaagaataagcattataatTCTAACAAATATTGTT
i chlSab2.chr11             C 0 C 0
s calJac3.chr9              77504480 106 - 124281992 AAAACAGGATAAATTTGTGAAGCAAGATTTTGG--------AGCAGTAATGAGATCAAGAAATGAGGGAAGAGTAACATCAAGAATCAGCATTATAATTCTAACAAATTATGTT
i calJac3.chr9              C 0 N 0
s canFam3.chr10             67358442 104 -  69331447 AAAAAAGGATAAATTCACAAAGCAAGATTTTAGAGGATCTAAACAGTAGTAAGTACAAGAAAAGAGAGAAGAGTCAT----------GGCATTTTAATTCTAACAAAGATTACT
i canFam3.chr10             I 3 C 0

a score=12452.000000
s hg38.chr12_GL383550v2_alt   169128 4 +    169178 CAAT
s panTro4.chr12             31407461 4 + 134246214 CAAT
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12             78617176 4 - 136387465 CAAT
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11             54812728 4 + 123690457 CAAT
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11             79717004 4 - 134985053 CAAT
i rheMac3.chr11             C 0 C 0
s macFas5.chr11             80817163 4 - 137757926 CAAT
i macFas5.chr11             C 0 C 0
s papAnu2.chr11             78769983 4 - 132286798 CAAT
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11             74693148 4 - 128539186 CAAT
i chlSab2.chr11             C 0 C 0
s canFam3.chr10             67358546 4 -  69331447 CAGT
i canFam3.chr10             C 0 N 0

a score=108052.000000
s hg38.chr12_GL383550v2_alt   169132 43 +    169178 TACAAGTAACTTTTTAATGTCTATCATCATGTTTTCTTGCCCA
s panTro4.chr12             31407465 43 + 134246214 TACAAGTAACTTTTTACTGTCTATCATCATGTTTTCCTGCCCA
i panTro4.chr12             C 0 C 0
s ponAbe2.chr12             78617180 43 - 136387465 TACAAGTAACTTTTTAATATCTATCATCATGTTTTCCTGCCCA
i ponAbe2.chr12             C 0 C 0
s nomLeu3.chr11             54812732 43 + 123690457 TACAAGTAACTTTTCAATGTCTATCATCATGTTTTCCTACCCA
i nomLeu3.chr11             C 0 C 0
s rheMac3.chr11             79717008 43 - 134985053 TACAAGTAACTTTTTAATGTCTATCATCATGTTTTCCTGCCCA
i rheMac3.chr11             C 0 N 0
s macFas5.chr11             80817167 43 - 137757926 TACAAGTAACTTTTTAATGTCTATCATCATGTTTTCCTGCCCA
i macFas5.chr11             C 0 C 0
s papAnu2.chr11             78769987 43 - 132286798 TACAAGTAACTTTTTAATGTCTATCATCATGTTTTCCTGCCCA
i papAnu2.chr11             C 0 C 0
s chlSab2.chr11             74693152 43 - 128539186 TACAAGTAACTTTTTAATGTCTATCATCATGTTTTCCTGCCCA
i chlSab2.chr11             C 0 N 0

a score=3263.000000
s hg38.chr12_GL383550v2_alt   169175 3 +    169178 ATG
s panTro4.chr12             31407508 3 + 134246214 ATG
i panTro4.chr12             C 0 N 0
s ponAbe2.chr12             78617223 3 - 136387465 ATG
i ponAbe2.chr12             C 0 N 0
s nomLeu3.chr11             54812775 3 + 123690457 ATG
i nomLeu3.chr11             C 0 N 0
s macFas5.chr11             80817210 3 - 137757926 GTG
i macFas5.chr11             C 0 N 0
s papAnu2.chr11             78770030 3 - 132286798 GTG
i papAnu2.chr11             C 0 N 0

